Citrus Sinensis ID: 041325
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 450 | 2.2.26 [Sep-21-2011] | |||||||
| P90648 | 732 | Myosin heavy chain kinase | yes | no | 0.382 | 0.234 | 0.3 | 6e-17 | |
| Q09715 | 614 | Transcriptional repressor | yes | no | 0.46 | 0.337 | 0.300 | 6e-17 | |
| Q09990 | 665 | F-box/WD repeat-containin | yes | no | 0.473 | 0.320 | 0.263 | 9e-16 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | no | no | 0.64 | 0.188 | 0.227 | 1e-14 | |
| Q8MY12 | 780 | Myosin heavy chain kinase | no | no | 0.44 | 0.253 | 0.269 | 1e-14 | |
| Q91854 | 518 | Beta-TrCP OS=Xenopus laev | N/A | no | 0.444 | 0.386 | 0.279 | 5e-14 | |
| Q5SRY7 | 542 | F-box/WD repeat-containin | yes | no | 0.426 | 0.354 | 0.280 | 8e-14 | |
| Q9UKB1 | 542 | F-box/WD repeat-containin | no | no | 0.426 | 0.354 | 0.280 | 8e-14 | |
| Q9Y297 | 605 | F-box/WD repeat-containin | no | no | 0.424 | 0.315 | 0.277 | 1e-13 | |
| Q3ULA2 | 605 | F-box/WD repeat-containin | no | no | 0.424 | 0.315 | 0.277 | 1e-13 |
| >sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 58/230 (25%)
Query: 225 LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW--K 282
L+S S D + K+W RC+ +++ HD ++ +++ ND ++++GS+D IKVW K
Sbjct: 515 LFSGSSDHSIKVWDLKKLRCIFTLE-GHDKPVHTVLL---NDKYLFSGSSDKTIKVWDLK 570
Query: 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD--QGNYIV 340
L TLE H AV L +S G L+SG+ D++I VW+ + NY
Sbjct: 571 TLECKY----------TLESHARAVKTLCIS--GQYLFSGSNDKTIKVWDLKTFRCNY-- 616
Query: 341 DGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCL 400
L+GHTK + + ++ L+SGS D TIR+W + K C
Sbjct: 617 -------------TLKGHTKWVTTICILGTNLYSGSYDKTIRVW--------NLKSLECS 655
Query: 401 AVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
A L GH R V+ + + D L+++ S D IKIW +
Sbjct: 656 ATLRGHDRWVEHM-VICDK--------------LLFTASDDNTIKIWDLE 690
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Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 7 |
| >sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tup11 PE=1 SV=1 | Back alignment and function description |
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Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 109/243 (44%), Gaps = 36/243 (14%)
Query: 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H + +L S +G + S S DRT ++W +C+ +K ++ + AI +S ND F
Sbjct: 401 HEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCI--LKLEIENGVTAIAISP-NDQF 457
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSI 328
+ GS D I+VW + +LV+ LE HK +V ++A S D ++L SG+ D++I
Sbjct: 458 IAVGSLDQIIRVW---------SVSGTLVERLEGHKESVYSIAFSPDSSILLSGSLDKTI 508
Query: 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386
VWE Q V + K GHT +L +AV S SGS D +++ W
Sbjct: 509 KVWEL-QATRSVGLSAIKPEGICKATYTGHTDFVLSVAVSPDSRWGLSGSKDRSMQFW-- 565
Query: 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446
D Q G S L +GH+ V + D SGS D +I
Sbjct: 566 -----DLQTGQSYL-TCQGHKNSVISVCFSPDGRQ-------------FASGSGDLRARI 606
Query: 447 WQI 449
W I
Sbjct: 607 WSI 609
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Transcriptional repressor. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans GN=lin-23 PE=1 SV=2 | Back alignment and function description |
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Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 116/262 (44%), Gaps = 49/262 (18%)
Query: 191 LANNYVQV--RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248
L +N +++ R+ C+ + T S L L D ++ S S D T ++W C++++
Sbjct: 239 LRDNTIKIWDRKDYSCSRILSGHTGSVLCLQYDNRVIISGSSDATVRVWDVETGECIKTL 298
Query: 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308
+ A++ + +G + T S D I VW + + ++ + L H++AV
Sbjct: 299 IHH----CEAVLHLRFANGIMVTCSKDRSIAVWDMVSP-----RDITIRRVLVGHRAAVN 349
Query: 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368
+ D + S + DR+I VW D ++ L GH + I CL
Sbjct: 350 VVDF--DDRYIVSASGDRTIKVWSMDTLEFV-------------RTLAGHRRGIACLQYR 394
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
L+ SGSSDNTIR+W S V CL VLEGH V+C+ + +
Sbjct: 395 GRLVVSGSSDNTIRLWDIHSGV--------CLRVLEGHEELVRCIR------FDEKR--- 437
Query: 429 SSTSFLVYSGSLDCEIKIWQIR 450
+ SG+ D +IK+W ++
Sbjct: 438 ------IVSGAYDGKIKVWDLQ 453
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Functions cell autonomously to negatively regulate cell cycle progression. Required to restrain cell proliferation in response to developmental cues. Probably recognizes and binds to some proteins and promotes their ubiquitination and degradation. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/395 (22%), Positives = 162/395 (41%), Gaps = 107/395 (27%)
Query: 61 SEHQCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDH 118
S +C TL+ G+++++ ++A + G L GS + +R W+ + + I
Sbjct: 1146 SSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQ------ 1197
Query: 119 ANVVATGNGDAVKSLVV--LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERI 176
G+ V S+V G L S D +R+W+I++
Sbjct: 1198 ------GHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINS-------------------- 1231
Query: 177 ATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKI 236
+KC CT+ H V+++ + DGS+L S S D+T ++
Sbjct: 1232 ----------SKCL-------------CTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRL 1268
Query: 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296
W S +CL + + H + +N++ + + + +GS D +++W +++ L
Sbjct: 1269 WDISSSKCLHTFQ-GHTNWVNSVAFNP-DGSMLASGSGDQTVRLW-------EISSSKCL 1319
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356
T + H S V+++ S DGT+L SG+ D+++ +W G +
Sbjct: 1320 -HTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLY-------------TFL 1365
Query: 357 GHTKAI--LCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT 414
GHT + + + +L SGS D T+R+W SS CL L+GH V +
Sbjct: 1366 GHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSG--------KCLYTLQGHNNWVGSIV 1417
Query: 415 AVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
S L+ SGS D +++W I
Sbjct: 1418 -------------FSPDGTLLASGSDDQTVRLWNI 1439
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q8MY12|MHCKC_DICDI Myosin heavy chain kinase C OS=Dictyostelium discoideum GN=mhkC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 114/249 (45%), Gaps = 51/249 (20%)
Query: 205 TWVHHVDTVSAL---ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVV 261
T + ++DTV L ++ D LYS S D +W + + + ++K AH +I A++
Sbjct: 501 TSIKNIDTVRGLQSECITGDSLRLYSGSNDGQIGVWDAVELKHVTNIK-AHGKSIRAVIK 559
Query: 262 SKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321
D + T AD+ +K W +N + QT+++ K + + +LY+
Sbjct: 560 RPGFDQNILTAGADSLVKEW-------DINTQ----QTIKEIKESNEVNTIFIQDNLLYT 608
Query: 322 GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTI 381
G D+++ VW D + +K L GHT+AI + + NLLFSGS+D I
Sbjct: 609 GCNDKTVKVW------------DMRSYECVK-TLSGHTRAIKSVCAMGNLLFSGSNDQQI 655
Query: 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441
+W ++ + L +GH VK L Y++ N ++YSGS D
Sbjct: 656 YVWNLATG--------TILTNFQGHEGWVKTL-------YAHNN--------MLYSGSHD 692
Query: 442 CEIKIWQIR 450
I+IW ++
Sbjct: 693 ETIRIWDLK 701
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Phosphorylates threonine at 'Thr-1823', 'Thr-1833' and 'Thr-2029' in the C-terminal tail region of myosin II heavy chain (mhcA) (By similarity). This phosphorylation is critical in actin-activated ATPase activity of the myosin and regulating the assembly and disassembly of myosin II filament. In vitro, catalytic domain phosphorylates mhcA, myelin basic protein, myosin regulatory light chain, casein and caldesmon. Drives the disassembly of myosin II filaments for efficient cytokinesis and recycling of myosin II that occurs during late cytokinesis. Can be activated in vitro by autophosphorylation. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
| >sp|Q91854|TRCB_XENLA Beta-TrCP OS=Xenopus laevis GN=fbxw1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 110/247 (44%), Gaps = 47/247 (19%)
Query: 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262
+C V T S L L D ++ + S D T ++W + L ++ + A++
Sbjct: 263 ECKRVLMGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH----CEAVLHL 318
Query: 263 KSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322
+ N+G + T S D I VW + +A + + LV H++AV + D + S
Sbjct: 319 RFNNGMMVTCSKDRSIAVWD-MASATDITLRRVLV----GHRAAVNVVDF--DDKYIVSA 371
Query: 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIR 382
+ DR+I VW ++ L GH + I CL L+ SGSSDNTIR
Sbjct: 372 SGDRTIKVWNTSTCEFV-------------RTLNGHKRGIACLQYRDRLVVSGSSDNTIR 418
Query: 383 IWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442
+W D + G +CL VLEGH V+C+ + N+ + SG+ D
Sbjct: 419 LW-------DIECG-ACLRVLEGHEELVRCIR------FDNKR---------IVSGAYDG 455
Query: 443 EIKIWQI 449
+IK+W +
Sbjct: 456 KIKVWDL 462
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Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. May participate in Wnt signaling. Xenopus laevis (taxid: 8355) |
| >sp|Q5SRY7|FBW1B_MOUSE F-box/WD repeat-containing protein 11 OS=Mus musculus GN=Fbxw11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 47/239 (19%)
Query: 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT 271
T S L L D ++ + S D T ++W + L ++ + H++A+ + + ++G + T
Sbjct: 280 TGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIH-HNEAVLHL---RFSNGLMVT 335
Query: 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
S D I VW + +A + + LV H++AV + D + S + DR+I VW
Sbjct: 336 CSKDRSIAVWD-MASATDITLRRVLV----GHRAAVNVVDF--DDKYIVSASGDRTIKVW 388
Query: 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT 391
++ L GH + I CL L+ SGSSDNTIR+W
Sbjct: 389 STSTCEFV-------------RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW------- 428
Query: 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
D + G +CL VLEGH V+C+ + N+ + SG+ D +IK+W ++
Sbjct: 429 DIECG-ACLRVLEGHEELVRCIR------FDNKR---------IVSGAYDGKIKVWDLQ 471
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Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. SCF(FBXW11) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. Mediates also the ubiquitination of IFNAR1 and targets phosphorylation-dependent degradation of beta-catenin. Involved in the oxidative stress-induced ubiquitin-mediated decrease of RCAN1. Promotes the degradation of CDC25A induced by ionizing radiation in cells progressing through S phase and thus may function in the intra-S-phase checkpoint (By similarity). Involved in the ubiquitination of phosphorylated NFKBIA, which degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Has an essential role in the control of the clock-dependent transcription via degradation of PER1 and phosphorylated PER2. Mus musculus (taxid: 10090) |
| >sp|Q9UKB1|FBW1B_HUMAN F-box/WD repeat-containing protein 11 OS=Homo sapiens GN=FBXW11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 47/239 (19%)
Query: 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT 271
T S L L D ++ + S D T ++W + L ++ + H++A+ + + ++G + T
Sbjct: 280 TGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIH-HNEAVLHL---RFSNGLMVT 335
Query: 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
S D I VW + +A + + LV H++AV + D + S + DR+I VW
Sbjct: 336 CSKDRSIAVWD-MASATDITLRRVLV----GHRAAVNVVDF--DDKYIVSASGDRTIKVW 388
Query: 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT 391
++ L GH + I CL L+ SGSSDNTIR+W
Sbjct: 389 STSTCEFV-------------RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW------- 428
Query: 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
D + G +CL VLEGH V+C+ + N+ + SG+ D +IK+W ++
Sbjct: 429 DIECG-ACLRVLEGHEELVRCIR------FDNKR---------IVSGAYDGKIKVWDLQ 471
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Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. SCF(FBXW11) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(FBXW11) mediates the ubiquitination of phosphorylated NFKBIA, which degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. SCF(FBXW11) mediates the ubiquitination of IFNAR1. Targets phosphorylation-dependent degradation of beta-catenin. Involved in the oxidative stress-induced a ubiquitin-mediated decrease in RCAN1. Mediates the degradation of CDC25A induced by ionizing radiation in cells progressing through S phase and thus may function in the intra-S-phase checkpoint. Has an essential role in the control of the clock-dependent transcription via degradation of PER1 and phosphorylated PER2. Is target of human immunodeficiency virus type 1 (HIV-1) protein VPU to polyubiquitinate and deplete BST2 from cells and antagonize its antiviral action. Homo sapiens (taxid: 9606) |
| >sp|Q9Y297|FBW1A_HUMAN F-box/WD repeat-containing protein 1A OS=Homo sapiens GN=BTRC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 47/238 (19%)
Query: 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT 271
T S L L D ++ + S D T ++W + L ++ + A++ + N+G + T
Sbjct: 343 TGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHH----CEAVLHLRFNNGMMVT 398
Query: 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
S D I VW + +L + L H++AV + D + S + DR+I VW
Sbjct: 399 CSKDRSIAVWD-----MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 451
Query: 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT 391
++ L GH + I CL L+ SGSSDNTIR+W
Sbjct: 452 NTSTCEFV-------------RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW------- 491
Query: 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
D + G +CL VLEGH V+C+ + N+ + SG+ D +IK+W +
Sbjct: 492 DIECG-ACLRVLEGHEELVRCIR------FDNKR---------IVSGAYDGKIKVWDL 533
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Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds to phosphorylated target proteins. SCF(BTRC) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) mediates the ubiquitination of NFKBIA, NFKBIB and NFKBIE; the degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Ubiquitination of NFKBIA occurs at 'Lys-21' and 'Lys-22'. SCF(BTRC) mediates the ubiquitination of phosphorylated NFKB1/nuclear factor NF-kappa-B p105 subunit, ATF4, SMAD3, SMAD4, CDC25A, DLG1, FBXO5 and probably NFKB2. SCF(BTRC) mediates the ubiquitination of phosphorylated SNAI1. May be involved in ubiquitination and subsequent proteasomal degradation through a DBB1-CUL4 E3 ubiquitin-protein ligase. Required for activation of NFKB-mediated transcription by IL1B, MAP3K14, MAP3K1, IKBKB and TNF. Required for proteolytic processing of GLI3. Homo sapiens (taxid: 9606) |
| >sp|Q3ULA2|FBW1A_MOUSE F-box/WD repeat-containing protein 1A OS=Mus musculus GN=Btrc PE=1 SV=2 | Back alignment and function description |
|---|
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 47/238 (19%)
Query: 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT 271
T S L L D ++ + S D T ++W + L ++ + A++ + N+G + T
Sbjct: 343 TGSVLCLQYDERVIITGSSDSTVRVWDVNAGEMLNTLIHH----CEAVLHLRFNNGMMVT 398
Query: 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
S D I VW + +L + L H++AV + D + S + DR+I VW
Sbjct: 399 CSKDRSIAVWD-----MASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVW 451
Query: 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT 391
++ L GH + I CL L+ SGSSDNTIR+W
Sbjct: 452 NTSTCEFV-------------RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW------- 491
Query: 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
D + G +CL VLEGH V+C+ + N+ + SG+ D +IK+W +
Sbjct: 492 DIECG-ACLRVLEGHEELVRCIR------FDNKR---------IVSGAYDGKIKVWDL 533
|
Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Recognizes and binds to phosphorylated target proteins. SCF(BTRC) mediates the ubiquitination of CTNNB1 and participates in Wnt signaling. SCF(BTRC) mediates the ubiquitination of NFKBIA, NFKBIB and NFKBIE; the degradation frees the associated NFKB1 to translocate into the nucleus and to activate transcription. Ubiquitination of NFKBIA occurs at 'Lys-21' and 'Lys-22'. SCF(BTRC) mediates the ubiquitination of phosphorylated NFKB1/nuclear factor NF-kappa-B p105 subunit, ATF4, SMAD3, SMAD4, CDC25A, DLG1, FBXO5 and probably NFKB2. SCF(BTRC) mediates the ubiquitination of phosphorylated SNAI1. May be involved in ubiquitination and subsequent proteasomal degradation through a DBB1-CUL4 E3 ubiquitin-protein ligase. Required for activation of NFKB-mediated transcription by IL1B, MAP3K14, MAP3K1, IKBKB and TNF. Required for proteolytic processing of GLI3. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 450 | ||||||
| 359473323 | 427 | PREDICTED: uncharacterized WD repeat-con | 0.906 | 0.955 | 0.602 | 1e-141 | |
| 147773984 | 507 | hypothetical protein VITISV_004097 [Viti | 0.906 | 0.804 | 0.606 | 1e-140 | |
| 356497798 | 433 | PREDICTED: uncharacterized WD repeat-con | 0.851 | 0.884 | 0.604 | 1e-128 | |
| 255558370 | 431 | F-box and wd40 domain protein, putative | 0.917 | 0.958 | 0.569 | 1e-126 | |
| 15221675 | 415 | WD40 domain-containing protein [Arabidop | 0.911 | 0.987 | 0.572 | 1e-123 | |
| 356501979 | 439 | PREDICTED: uncharacterized WD repeat-con | 0.851 | 0.872 | 0.583 | 1e-122 | |
| 255540791 | 401 | F-box and wd40 domain protein, putative | 0.835 | 0.937 | 0.584 | 1e-121 | |
| 356513569 | 394 | PREDICTED: uncharacterized WD repeat-con | 0.848 | 0.969 | 0.565 | 1e-119 | |
| 356516706 | 421 | PREDICTED: F-box/WD repeat-containing pr | 0.868 | 0.928 | 0.584 | 1e-118 | |
| 225457146 | 409 | PREDICTED: uncharacterized WD repeat-con | 0.744 | 0.819 | 0.603 | 1e-118 |
| >gi|359473323|ref|XP_003631291.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 280/465 (60%), Positives = 331/465 (71%), Gaps = 57/465 (12%)
Query: 1 MGLLLPFPMPCRRNKEPK---------------FQPSSNHLQSELSNASLSSQPSLPSVP 45
MG L P+ C + KE + S+ L SE SN SL+SQPSLPSVP
Sbjct: 1 MGFL-RCPLSCHKEKESQSRAQAQAQAQAQAHHLHSDSSCLHSESSN-SLASQPSLPSVP 58
Query: 46 SLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPN 105
SL S S R + + H C +TLK G+SSY+ SLA+AGK LY GSS+ EIR W+RDP+
Sbjct: 59 SLT-SQSRRHEQAITTHHHCISTLK--GHSSYVFSLALAGKFLYSGSSDKEIRIWSRDPS 115
Query: 106 NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTS 165
TS D G VA GNG AVKSLVVLGDKLFSAHQD KIRVWK+DN++
Sbjct: 116 RLE--TSNDNG-----VALGNG-AVKSLVVLGDKLFSAHQDQKIRVWKVDNDS------- 160
Query: 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL 225
++ Y+ +ATLPTL+DR K F A+NYVQVRRHKKCTWVHHVDT+SALALS DGSLL
Sbjct: 161 ---PHQKYKCMATLPTLSDRALKLFSASNYVQVRRHKKCTWVHHVDTISALALSEDGSLL 217
Query: 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285
YS SWDRTFKIW+T+DFRCLES + AHDDAINA+V+ S DG VYTGSAD KIKVWKK
Sbjct: 218 YSASWDRTFKIWKTTDFRCLESAEKAHDDAINALVL--STDGIVYTGSADRKIKVWKKHE 275
Query: 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345
KKH LV TLEKHKSAV ALALS DG+VLYSGACDRSI+VWE+D +
Sbjct: 276 G----EKKHRLVATLEKHKSAVNALALSPDGSVLYSGACDRSIIVWEKDTSS-------S 324
Query: 346 SGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405
GHMV+ GALRGHTKAILCLA+VS+L+FSGS+D T+RIW++ Q+ YSCLAV EG
Sbjct: 325 GGHMVVAGALRGHTKAILCLAIVSDLVFSGSADKTVRIWKKGL-----QRSYSCLAVFEG 379
Query: 406 HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
HR PVKCLTA VD +Y+ R++ ++L+YSGSLDCEIK+WQ+R
Sbjct: 380 HRGPVKCLTAAVD-NYNGRSNSDDDAAYLIYSGSLDCEIKVWQLR 423
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147773984|emb|CAN76269.1| hypothetical protein VITISV_004097 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 281/463 (60%), Positives = 328/463 (70%), Gaps = 55/463 (11%)
Query: 1 MGLLLPFPMPCRRNKEPK-------------FQPSSNHLQSELSNASLSSQPSLPSVPSL 47
MG L P+ C R KE + S+ L SE SN SL+SQPSLPSVPSL
Sbjct: 83 MGFL-RCPLSCHREKESQSRAQAQAQAQAHHLHSDSSCLHSESSN-SLASQPSLPSVPSL 140
Query: 48 APSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNY 107
S S R + + H C +TLK G+SSY+ SLA+AGK LY GSS+ EIR W RDP+
Sbjct: 141 T-SQSRRHEQXITTHHHCISTLK--GHSSYVFSLALAGKFLYSGSSDKEIRIWXRDPSRL 197
Query: 108 VNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGK 167
S D G VA GNG AVKSLVVLGDKLFSAHQD KIRVWK+DN+
Sbjct: 198 E--XSNDNG-----VALGNG-AVKSLVVLGDKLFSAHQDQKIRVWKVDNDXP-------- 241
Query: 168 LKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227
++ Y+ +ATLPTL+DR K F A+NYVQVRRHKKCTWVHHVDT+SALALS DGSLLYS
Sbjct: 242 --HQKYKCMATLPTLSDRALKLFSASNYVQVRRHKKCTWVHHVDTISALALSEDGSLLYS 299
Query: 228 TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287
SWDRTFKIW+T+DFRCLES + AHDDAINA+V+ S DG VYTGSAD KIKVWKK
Sbjct: 300 ASWDRTFKIWKTTDFRCLESAEKAHDDAINALVL--STDGIVYTGSADRKIKVWKKHEG- 356
Query: 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347
KKH LV TLEKHKSAV ALALS DG+VLYSGACDRSI+VWE+D + G
Sbjct: 357 ---EKKHRLVATLEKHKSAVNALALSPDGSVLYSGACDRSIIVWEKDTSS-------SGG 406
Query: 348 HMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
HMV+ GALRGHTKAILCLAVVS+L+FSGS+D T+RIW++ Q+ YSCLAV EGHR
Sbjct: 407 HMVVAGALRGHTKAILCLAVVSDLVFSGSADKTVRIWKKGL-----QRSYSCLAVFEGHR 461
Query: 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
PVKCLTA VD +Y+ R++ ++L+YSGSLDCEIK+WQ+R
Sbjct: 462 GPVKCLTAAVD-NYNGRSNSDDDAAYLIYSGSLDCEIKVWQLR 503
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356497798|ref|XP_003517744.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/412 (60%), Positives = 303/412 (73%), Gaps = 29/412 (7%)
Query: 44 VPSLAPSSS-FRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNR 102
VPSL P F ++ P + H+ VKG++S I SLA+ GK LY SS GEIRA NR
Sbjct: 40 VPSLTPQKPHFLEEQPQTTHHR--LITAVKGHTSPIFSLALHGKSLYSASSGGEIRACNR 97
Query: 103 DPNNYVNITSTDVGDHAN---VVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTS 159
+P + +I + + N VVAT N +KSL+V DKLF+AHQDHKIRVWK T+
Sbjct: 98 NPTSANDIITLKYISNVNTNTVVATSNA-PIKSLIVSHDKLFTAHQDHKIRVWK---TTT 153
Query: 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219
+ YY+ +ATLPTL+DR +K F + NYV++RRHKK TWVHHVDTVSALALS
Sbjct: 154 DQPGNNNNNNPNYYKCVATLPTLHDRISKLFSSKNYVEIRRHKKRTWVHHVDTVSALALS 213
Query: 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279
DGSLLYS SWDRTFKIWRTSDF+CLESVKNAH+DAIN++V+ SN+GFVYTGSADT+IK
Sbjct: 214 RDGSLLYSASWDRTFKIWRTSDFKCLESVKNAHEDAINSLVL--SNNGFVYTGSADTRIK 271
Query: 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339
+WKKL KKHSL+ TLEKHKSAV ALAL++DG+VLYSGACDRSILVWE DQ
Sbjct: 272 MWKKLEG----EKKHSLIGTLEKHKSAVNALALNSDGSVLYSGACDRSILVWESDQ---- 323
Query: 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
++++ MVL GALRGHTKAILCL VV++L+ SGS+DN++R+WRR + +K YSC
Sbjct: 324 ---NENNNTMVLVGALRGHTKAILCLVVVADLVCSGSADNSVRVWRRGA-----EKSYSC 375
Query: 400 LAVLEGHRRPVKCLTAVVDSDYSN-RNSDHSSTSFLVYSGSLDCEIKIWQIR 450
LAV EGHRRPVKCL VDS+ R DH+S+S+LVYS LDCEIK+WQIR
Sbjct: 376 LAVFEGHRRPVKCLAMAVDSNSGGPREDDHNSSSYLVYSAGLDCEIKVWQIR 427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558370|ref|XP_002520212.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223540704|gb|EEF42267.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 263/462 (56%), Positives = 316/462 (68%), Gaps = 49/462 (10%)
Query: 1 MGLLLPFPMPCRRNKEP-------KFQPSSNHLQSELSNASLSSQPSLPS-VPSLAPSSS 52
MGLL P P+ ++KE + QP SN L S+ S +S S VPSL P S
Sbjct: 1 MGLL-PCPLFRSKDKEQPQSLFRSQSQPHSNFLHSQSSTSSSLSSQPSLPSVPSLTPPCS 59
Query: 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITS 112
+ + + H+C A LK SYI SL + G +LY GSSN +IR+W++DP+ N T+
Sbjct: 60 QQHEQTSVVHHRCLAILK---GHSYIFSLILDGNILYSGSSNSDIRSWSKDPSADENPTA 116
Query: 113 TDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKY 172
N++AT NG AVKS+VV+GD+LFSAHQD KIRVWKI +N + K
Sbjct: 117 L------NIIATSNG-AVKSIVVIGDELFSAHQDCKIRVWKIGSNDNN--------KQHK 161
Query: 173 YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232
Y IATLPT+NDRF + F + NYVQVRRHKKCTWVHHVDTVSALA+S DGS L+S SWDR
Sbjct: 162 YNCIATLPTMNDRFLRFFSSKNYVQVRRHKKCTWVHHVDTVSALAVSKDGSFLFSASWDR 221
Query: 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292
TFKIWRTSDFRCLESV NAHDDAIN +V+ SNDGFVYTGSAD KIKVWKK K
Sbjct: 222 TFKIWRTSDFRCLESVANAHDDAINTLVL--SNDGFVYTGSADKKIKVWKKQAG----EK 275
Query: 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352
KHSL+ T+EKHKSAV ALALS DG+VLYSGACDRSILVWE+D + G MV+
Sbjct: 276 KHSLLATMEKHKSAVNALALSADGSVLYSGACDRSILVWEKDA--------NVGGEMVVA 327
Query: 353 GALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412
GALRGH KAILCLAV ++L+ SGS+D+TIRIWRRS + YSCLAV EGHR+ +KC
Sbjct: 328 GALRGHNKAILCLAVAADLICSGSADSTIRIWRRSGV---EKTNYSCLAVFEGHRKAIKC 384
Query: 413 LTAV-VD----SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
LT +D S S+ + TS+LVYSGSLDC+I++W I
Sbjct: 385 LTITGMDGKSISSGKGDGSNSAGTSYLVYSGSLDCDIRVWHI 426
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221675|ref|NP_173823.1| WD40 domain-containing protein [Arabidopsis thaliana] gi|2829890|gb|AAC00598.1| Hypothetical protein [Arabidopsis thaliana] gi|332192360|gb|AEE30481.1| WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 258/451 (57%), Positives = 317/451 (70%), Gaps = 41/451 (9%)
Query: 1 MGLL-LPFPMPCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPA 59
MGLL P+PC + S++H +++SL SQPSLP VPSL SF+ Q+ +
Sbjct: 1 MGLLPCSCPLPCNETRSECETKSTHHQSESSTSSSLLSQPSLPLVPSL----SFQHQSSS 56
Query: 60 ASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA 119
+H C ATLK K SSY+ SLA++ KLLY GSSN EIR W R+P ++ GD
Sbjct: 57 V-DHHCLATLKDK--SSYVSSLAVSDKLLYTGSSNSEIRVWPREPPFSPEYST---GDDR 110
Query: 120 NVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATL 179
NVVA GNG VKSLV+LGDKL SAHQDHKIRVWKI + ++ + + Y+ +ATL
Sbjct: 111 NVVANGNG-GVKSLVILGDKLISAHQDHKIRVWKIIDESNR--------RGQKYKCVATL 161
Query: 180 PTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239
PT+NDRF F + +YV+VRRHKKCTWVHHVD VS+LALS DGSLLYS SWDR+FKIWRT
Sbjct: 162 PTMNDRFKTLFSSKSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDRSFKIWRT 221
Query: 240 SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299
SDF+CL+S++ AHDDAINAIVVSK DGFVYTGSAD KIKVW K +KKHSLV T
Sbjct: 222 SDFKCLDSIEKAHDDAINAIVVSK--DGFVYTGSADKKIKVWNK------KDKKHSLVAT 273
Query: 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359
L KH SAV ALA+S DG VLYSGACDRSILVWER +++GDD+ HM + GALRGH
Sbjct: 274 LTKHLSAVNALAISEDGKVLYSGACDRSILVWER-----LINGDDEELHMSVVGALRGHR 328
Query: 360 KAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS 419
KAI+CLAV S+L+ SGS+D ++R+WRR ++GYSCLAVLEGH +PVK L
Sbjct: 329 KAIMCLAVASDLVLSGSADKSLRVWRRG---LMEKEGYSCLAVLEGHTKPVKSLAVS--- 382
Query: 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
+ + +S S +VYSGSLD +K+W +R
Sbjct: 383 --VSDSDSNSDYSCMVYSGSLDLSLKVWNLR 411
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501979|ref|XP_003519800.1| PREDICTED: uncharacterized WD repeat-containing protein alr2800-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 242/415 (58%), Positives = 298/415 (71%), Gaps = 32/415 (7%)
Query: 44 VPSLAPSSSFR-KQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNR 102
+PSL P ++ P + H+ T VKG++S I SLA+ GK LY SSNGEIRA +R
Sbjct: 46 IPSLTPQKLHHPEEQPQTTHHKLVTT--VKGHTSTIFSLALHGKSLYSASSNGEIRACSR 103
Query: 103 DPNN--YVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160
DP + I+ + +V N +KSL+V DKLF+AHQDHKIRVWK +
Sbjct: 104 DPTSTELKYISGEQPLPNTTIVVNSNA-PIKSLIVSHDKLFTAHQDHKIRVWKTTDQPGN 162
Query: 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220
+ YY+ +A+LPTL+DRF+K F + NYV++RRHKK TWVHHVDTVSALALS
Sbjct: 163 NNNNP-----NYYKCVASLPTLHDRFSKLFSSENYVEIRRHKKRTWVHHVDTVSALALSQ 217
Query: 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280
DGSLLYS SWDRTFKIWRTSDF+CLESVKNAH+DAIN++++ SN+G VYTGSADTKIK+
Sbjct: 218 DGSLLYSASWDRTFKIWRTSDFKCLESVKNAHEDAINSLIL--SNNGIVYTGSADTKIKM 275
Query: 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340
WKKL +KKHSL+ TLEKHKSAV ALAL++DG+VLYSGACDRSILVWE D+
Sbjct: 276 WKKLEG----DKKHSLIGTLEKHKSAVNALALNSDGSVLYSGACDRSILVWEGDE----- 326
Query: 341 DGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKG-YSC 399
D++ +MV+ GALRGHTKAILCL V S+L+ SGS+DN++RIWRR SV + +K YSC
Sbjct: 327 ---DNNNNMVVVGALRGHTKAILCLVVESDLVCSGSADNSVRIWRR--SVENEKKSYYSC 381
Query: 400 LAVLEGHRRPVKCLTAVVDSD----YSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
LAVLE HRRPVKCL VDS+ + D S S+LVYS LDC+IK+WQIR
Sbjct: 382 LAVLESHRRPVKCLAMAVDSNSGGGGGGPHEDDDSRSYLVYSAGLDCDIKVWQIR 436
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540791|ref|XP_002511460.1| F-box and wd40 domain protein, putative [Ricinus communis] gi|223550575|gb|EEF52062.1| F-box and wd40 domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/419 (58%), Positives = 295/419 (70%), Gaps = 43/419 (10%)
Query: 34 SLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSS 93
S SSQPSL S+PSL + + + +H C ATLK G+++YI SL +AGK LY GSS
Sbjct: 17 SFSSQPSLQSLPSLTSDRQYF-LSTTSRQHHCLATLK--GHTTYISSLTLAGKFLYSGSS 73
Query: 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153
+ EIR+WNR+P + I ++ + +VVA G G AVKSLVVL DKLFSAHQDHKIRVW+
Sbjct: 74 DKEIRSWNRNPLDSEVIDQENLCN--SVVAAGKG-AVKSLVVLADKLFSAHQDHKIRVWR 130
Query: 154 IDNNTSAYYSTSGKLKNKY---YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210
I +S +L N++ Y +ATLPTL DR K L N VQ+RRHK CTWVHHV
Sbjct: 131 I---------SSQELDNQHQQKYTHLATLPTLGDRAFKILLPKNQVQIRRHKTCTWVHHV 181
Query: 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVY 270
DTVSA++LS D SLLYS SWDRT KIWRTSDF+CLES+ NAHDDAINA+ V S+DG VY
Sbjct: 182 DTVSAISLSRDESLLYSVSWDRTLKIWRTSDFKCLESIANAHDDAINAVAV--SDDGDVY 239
Query: 271 TGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILV 330
TGSAD KIKVW+K KKHSLV TLEKH S + ALALSTDG +LYSGA DRSI+V
Sbjct: 240 TGSADKKIKVWRKSTGE---KKKHSLVGTLEKHNSGINALALSTDGYLLYSGASDRSIVV 296
Query: 331 WERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSV 390
WE+D DD G MV+ GALRGH ++ILCL VVS+L+ SGS D TIR+WR
Sbjct: 297 WEKD--------DDGGGDMVVLGALRGHKQSILCLVVVSDLVCSGSGDKTIRVWRCV--- 345
Query: 391 TDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
+ Y CLAV EGH+ PVKCLTA +D + NS S TS+L+YSGSLDC+IK+WQ+
Sbjct: 346 ---DRNYCCLAVFEGHKGPVKCLTATID----HHNS--SETSYLIYSGSLDCDIKVWQL 395
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513569|ref|XP_003525485.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 239/423 (56%), Positives = 289/423 (68%), Gaps = 41/423 (9%)
Query: 28 SELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSS-YIPSLAIAGK 86
+ +N SLSSQ SL SVPSL S P+ + H C TLK +SS YI L +AG
Sbjct: 5 ASFNNNSLSSQRSLASVPSLNSHSHLF--IPSTTSHSCLTTLKPHTSSSVYISCLTLAGN 62
Query: 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD 146
LLY GSS+ EIR+WN + + + NVV G G AVKS+VV DKLF+AHQD
Sbjct: 63 LLYTGSSDREIRSWN-----HTHFIQKPTTTNNNVVIAGKG-AVKSIVVHSDKLFTAHQD 116
Query: 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206
+KIRVW++ N +N+ Y R+ATLPTL DR TK L N V++RRHKKCTW
Sbjct: 117 NKIRVWRVTNLEHD--------QNQKYTRVATLPTLGDRLTKLLLPKNQVRIRRHKKCTW 168
Query: 207 VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND 266
VHHVDTVS+LALS DG+ LYS SWDRT K+WRT DF CLESV++AHDDAINA+ VS D
Sbjct: 169 VHHVDTVSSLALSKDGTFLYSVSWDRTIKVWRTKDFACLESVRDAHDDAINAVAVSY--D 226
Query: 267 GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR 326
G+VYTGSAD +I+VWKKL KKHSLV TLEKH S + ALALS DG+VLYSGACDR
Sbjct: 227 GYVYTGSADKRIRVWKKLEG----EKKHSLVDTLEKHNSGINALALSADGSVLYSGACDR 282
Query: 327 SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRR 386
SILV E+ + +G +++ GALRGHT++ILCLAVVS+L+ SGS D T+RIWR
Sbjct: 283 SILVSEKGK----------NGKLLVVGALRGHTRSILCLAVVSDLVCSGSEDKTVRIWRG 332
Query: 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446
QK YSCLAVLEGHR P+K LTA VD + NS+ SFLVYS SLDC++K+
Sbjct: 333 V------QKEYSCLAVLEGHRSPIKSLTAAVDRSEQDPNSEEP--SFLVYSASLDCDVKV 384
Query: 447 WQI 449
WQ+
Sbjct: 385 WQV 387
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516706|ref|XP_003527034.1| PREDICTED: F-box/WD repeat-containing protein sel-10-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 249/426 (58%), Positives = 294/426 (69%), Gaps = 35/426 (8%)
Query: 27 QSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAAS-EHQCSATLKVKGNSSYIPSLAIAG 85
Q + SLSSQ SL SVPSL + P ++ H C TLK SSYI SL ++G
Sbjct: 23 QGSTTPKSLSSQRSLVSVPSL--NHHHHLHTPNSTVYHHCLTTLK-GHTSSYISSLTLSG 79
Query: 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQ 145
K LY GSS+ EIR+WNR P N N + +N V TGNG AVKSLV+ +KLFSAHQ
Sbjct: 80 KFLYTGSSDREIRSWNRIPENSSNNNNN-----SNTVLTGNG-AVKSLVIQSNKLFSAHQ 133
Query: 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205
DHKIRVWKI N + K Y +ATLPTL DR +K + N VQ+RRHKKCT
Sbjct: 134 DHKIRVWKISTNNNNDNDHDQK-----YTHVATLPTLGDRASKILIPKNQVQIRRHKKCT 188
Query: 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN 265
WVHHVDTVSALALS DG+LLYS SWDRT KIW+T DF CLES+ NAHDDAINA+ V S
Sbjct: 189 WVHHVDTVSALALSRDGTLLYSVSWDRTLKIWKTKDFTCLESLANAHDDAINAVAV--SY 246
Query: 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325
DG VYTGSAD KIKVWKK KKH+L++TLEKH S V ALALS+D V+YSGACD
Sbjct: 247 DGRVYTGSADKKIKVWKKFAG----EKKHTLIETLEKHNSGVNALALSSDENVVYSGACD 302
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWR 385
R+ILVWE+ +G D G M + GALRGHTK+ILCL+VV++L+ SGS+D TIRIWR
Sbjct: 303 RAILVWEKKEG--------DDGKMGVVGALRGHTKSILCLSVVADLVCSGSADTTIRIWR 354
Query: 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSST--SFLVYSGSLDCE 443
V H+ YSCLAVLEGHR +KC++AVVD + +N N+ S SFLVYSG LDC+
Sbjct: 355 --GCVDSHE--YSCLAVLEGHRASIKCISAVVDCNNNNNNTSQSEALLSFLVYSGGLDCD 410
Query: 444 IKIWQI 449
IK+WQI
Sbjct: 411 IKVWQI 416
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457146|ref|XP_002280390.1| PREDICTED: uncharacterized WD repeat-containing protein alr3466-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/381 (60%), Positives = 278/381 (72%), Gaps = 46/381 (12%)
Query: 72 KGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPN---NYVNITSTDVGDHANVVATGNGD 128
KG++SY+ SLA+AG L+ GSS+ EIR W ++ N ++ NI++ NVVA G G
Sbjct: 67 KGHTSYVSSLALAGNFLFSGSSDKEIRLWEQNLNSELDHENISN-------NVVAVGKG- 118
Query: 129 AVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTK 188
AVKS+VVLGDKLFSAHQDHKIRVWKI++ + + R+ATLPTL DR K
Sbjct: 119 AVKSMVVLGDKLFSAHQDHKIRVWKINDQDPHHQKCT---------RLATLPTLGDRAIK 169
Query: 189 CFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248
NN+VQ+RRHKKCTWVHHVDTVS LALS D SLLYS SWDR+ KIWRT+DF+CLESV
Sbjct: 170 LLTPNNHVQIRRHKKCTWVHHVDTVSVLALSEDNSLLYSVSWDRSLKIWRTTDFKCLESV 229
Query: 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308
NAHDDAINA+ + S+DG++YTGSAD IKVW+K +KKHS V TLEKH S +
Sbjct: 230 GNAHDDAINALAL--SHDGYIYTGSADKTIKVWRKAPE----DKKHSQVATLEKHNSGIN 283
Query: 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368
ALALSTDG+VLYSGA DRSI+VWE+D SG+MV+ GALRGH+K+ILCLAVV
Sbjct: 284 ALALSTDGSVLYSGASDRSIVVWEKDY----------SGNMVVVGALRGHSKSILCLAVV 333
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
S+++FSGS+DNTIRIWR K YSCLA+LEGH PVKCLTA D N +
Sbjct: 334 SDVVFSGSADNTIRIWRGI------HKSYSCLAILEGHTGPVKCLTAATDC----YNPSN 383
Query: 429 SSTSFLVYSGSLDCEIKIWQI 449
+STS+LVYSGSLDC+IK+WQI
Sbjct: 384 TSTSYLVYSGSLDCDIKVWQI 404
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 450 | ||||||
| TAIR|locus:2032452 | 415 | AT1G24130 "AT1G24130" [Arabido | 0.753 | 0.816 | 0.591 | 4.1e-104 | |
| TAIR|locus:2170061 | 388 | AT5G50120 "AT5G50120" [Arabido | 0.748 | 0.868 | 0.513 | 2.9e-87 | |
| TAIR|locus:2024031 | 418 | AT1G24530 "AT1G24530" [Arabido | 0.5 | 0.538 | 0.548 | 1.1e-62 | |
| TAIR|locus:2074825 | 469 | AT3G50390 "AT3G50390" [Arabido | 0.531 | 0.509 | 0.340 | 4.6e-34 | |
| TAIR|locus:2066276 | 465 | AT2G26490 "AT2G26490" [Arabido | 0.437 | 0.423 | 0.406 | 8.7e-40 | |
| TAIR|locus:2083710 | 415 | AT3G51930 "AT3G51930" [Arabido | 0.608 | 0.660 | 0.359 | 2.8e-43 | |
| TAIR|locus:2085929 | 473 | AT3G18950 "AT3G18950" [Arabido | 0.653 | 0.621 | 0.336 | 2.4e-37 | |
| TAIR|locus:2010157 | 471 | AT1G49450 "AT1G49450" [Arabido | 0.646 | 0.617 | 0.337 | 3e-37 | |
| TAIR|locus:2015423 | 351 | AT1G47610 "AT1G47610" [Arabido | 0.491 | 0.629 | 0.364 | 3.6e-34 | |
| TAIR|locus:2116194 | 495 | AT4G34380 "AT4G34380" [Arabido | 0.646 | 0.587 | 0.309 | 6.5e-35 |
| TAIR|locus:2032452 AT1G24130 "AT1G24130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
Identities = 220/372 (59%), Positives = 264/372 (70%)
Query: 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITS 112
F+ Q+ + +H C ATLK K SSY+ SLA++ KLLY GSSN EIR W R+P + S
Sbjct: 50 FQHQSSSV-DHHCLATLKDK--SSYVSSLAVSDKLLYTGSSNSEIRVWPREPP-FSPEYS 105
Query: 113 TDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKY 172
T GD NVVA GNG VKSLV+LGDKL SAHQDHKIRVWKI + ++ + +
Sbjct: 106 T--GDDRNVVANGNG-GVKSLVILGDKLISAHQDHKIRVWKIIDESNR--------RGQK 154
Query: 173 YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDR 232
Y+ +ATLPT+NDRF F + +YV+VRRHKKCTWVHHVD V SWDR
Sbjct: 155 YKCVATLPTMNDRFKTLFSSKSYVEVRRHKKCTWVHHVDAVSSLALSQDGSLLYSASWDR 214
Query: 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292
+FKIWRTSDF+CL+S++ AHDDAINAIVVSK DGFVYTGSAD KIKVW K +K
Sbjct: 215 SFKIWRTSDFKCLDSIEKAHDDAINAIVVSK--DGFVYTGSADKKIKVWNKK------DK 266
Query: 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352
KHSLV TL KH SAV ALA+S DG VLYSGACDRSILVWER +++GDD+ HM +
Sbjct: 267 KHSLVATLTKHLSAVNALAISEDGKVLYSGACDRSILVWER-----LINGDDEELHMSVV 321
Query: 353 GALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412
GALRGH KAI+CLAV S+L+ SGS+D ++R+WRR ++GYSCLAVLEGH +PVK
Sbjct: 322 GALRGHRKAIMCLAVASDLVLSGSADKSLRVWRRGLM---EKEGYSCLAVLEGHTKPVKS 378
Query: 413 LT-AVVDSDYSN 423
L +V DSD SN
Sbjct: 379 LAVSVSDSD-SN 389
|
|
| TAIR|locus:2170061 AT5G50120 "AT5G50120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
Identities = 191/372 (51%), Positives = 242/372 (65%)
Query: 63 HQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVV 122
HQC ATL V +SYI SL +AGK LY GS++G +R WN N + T + + +V+
Sbjct: 27 HQCIATL-VCHTASYISSLTLAGKRLYTGSNDGVVRLWNA---NTLE-TLAEASSNGDVI 81
Query: 123 A--TGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLP 180
G G AVKSLV+L DKLF+AHQDHKIRVWKI N GK KY +AT+P
Sbjct: 82 TGERGGGGAVKSLVILADKLFTAHQDHKIRVWKI--NDVVEEDVGGK---KYMH-LATMP 135
Query: 181 TLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTS 240
T++DRF KC + N V++RRHKK +WVHHVD V SWDRT KIWRT+
Sbjct: 136 TISDRFAKCLMPKNQVEIRRHKKASWVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTT 195
Query: 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK--HSLVQ 298
DF+CLES NAHDDAINA+ +S++ D +YTGS+D +IKVW+K V KK HSLV
Sbjct: 196 DFKCLESFTNAHDDAINAVALSENGD--IYTGSSDQRIKVWRKNINEENVKKKRKHSLVA 253
Query: 299 TLEKHKSAVTALALS-TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357
L +H S + ALALS T+G++L+SG D SILVWERD G G +V+ G LRG
Sbjct: 254 ILSEHNSGINALALSGTNGSLLHSGGSDGSILVWERDDG----------GDIVVVGMLRG 303
Query: 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT-AV 416
HT+++LCLAVVS++L SGS+D T+R+W+ S+ K YSCLA+LEGH PVKCLT A
Sbjct: 304 HTESVLCLAVVSDILCSGSADKTVRLWKCSA------KDYSCLAMLEGHLGPVKCLTGAF 357
Query: 417 VDSDYSNRNSDH 428
DS ++ S H
Sbjct: 358 RDSRKADEASYH 369
|
|
| TAIR|locus:2024031 AT1G24530 "AT1G24530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 136/248 (54%), Positives = 163/248 (65%)
Query: 173 YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDR 232
Y+++ TLPTLNDR + L NYVQVRRHKK W+ H D V SWD+
Sbjct: 158 YKQLTTLPTLNDRLRRFALPKNYVQVRRHKKRLWIEHADAVTALAVSDGFIYS--VSWDK 215
Query: 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292
T KIWR SD RC ES+K AHDDA+NAI VS +G VYTGSAD +I+VW K K
Sbjct: 216 TLKIWRASDLRCKESIK-AHDDAVNAIAVS--TNGTVYTGSADRRIRVWAKPTG----EK 268
Query: 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352
+H+LV TLEKHKSAV ALAL+ DG+VL+SG+CDRSILVWER+ D S +M ++
Sbjct: 269 RHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVWERE---------DTSNYMAVR 319
Query: 353 GALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412
GALRGH KAIL L VS+LL SGS+D T+RIWRR YSCL VL GH +PVK
Sbjct: 320 GALRGHDKAILSLFNVSDLLLSGSADRTVRIWRRGPD-----SSYSCLEVLSGHTKPVKS 374
Query: 413 LTAVVDSD 420
L AV + +
Sbjct: 375 LAAVREKE 382
|
|
| TAIR|locus:2074825 AT3G50390 "AT3G50390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 90/264 (34%), Positives = 140/264 (53%)
Query: 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDH 147
+Y +++G++ D N + + V + ++ + N VK++V+ GDK+F+ HQD
Sbjct: 101 IYSLATSGDLLYTGSDSKN-IRVWKNHV-EFSSFKS--NSGLVKAIVLAGDKIFTGHQDG 156
Query: 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ-VRRHKKCTW 206
KIRVWK + K N + R+ T+P L D + ++Y RR++
Sbjct: 157 KIRVWK----------AASKESN-VHRRVGTMPNLLDYIRNSIVPSSYFNFTRRNRSSAA 205
Query: 207 V--HHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS 264
+ H+D + SWD+TFK+WR SD RC+ESV NAH+DA+NA+V
Sbjct: 206 LGFRHLDAISCLALSEDKRLLYSGSWDKTFKVWRVSDLRCVESV-NAHEDAVNAVV--SG 262
Query: 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324
DG V+TGSAD +KVW++ A KH +TL K AVTA+A+ T++Y G+
Sbjct: 263 FDGLVFTGSADGTVKVWRREDQAKDT--KHFFSETLLKQDCAVTAIAVDQSATLVYCGSS 320
Query: 325 DRSILVWERDQGNYIVDGDDDSGH 348
D ++ WER+ N + +G GH
Sbjct: 321 DGTVNFWERE--NNMKNGGVLKGH 342
|
|
| TAIR|locus:2066276 AT2G26490 "AT2G26490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 87/214 (40%), Positives = 124/214 (57%)
Query: 126 NGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDR 185
N VK++V+ G+K+F+ HQD KIRVWK+ + + SG TLPTL D
Sbjct: 133 NSGLVKAIVISGEKIFTGHQDGKIRVWKVSPKNQSLHKRSG-----------TLPTLKDI 181
Query: 186 FTKCFLANNYVQVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCL 245
F NYV+V++H+ W+ H D V SWDRT K+WR +D +CL
Sbjct: 182 FKASLKPRNYVEVKKHRTALWIKHADAVSCLSLNDEQGLLYSASWDRTIKVWRIADSKCL 241
Query: 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305
ES+ AHDDA+N++V + + V++GSAD +K WK+ + KH+L+QTL K +S
Sbjct: 242 ESIP-AHDDAVNSVV--STTEAIVFSGSADGTVKAWKRDQQGKYT--KHTLMQTLTKQES 296
Query: 306 AVTALALSTDGTVLYSGACDRSILVWERD-QGNY 338
AVTALA+S +G +Y G+ D + WER+ Q NY
Sbjct: 297 AVTALAVSKNGAAVYFGSSDGLVNFWEREKQLNY 330
|
|
| TAIR|locus:2083710 AT3G51930 "AT3G51930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 114/317 (35%), Positives = 169/317 (53%)
Query: 78 IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD-AVKSLVVL 136
+ SLA+ G+ L S +I W + P D+ A G GD +VK+LV +
Sbjct: 64 VSSLALCGEFLLSASQGKDIIVWQQ-P---------DLKIFAKF---GQGDGSVKALVSV 110
Query: 137 GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196
G K+F+AHQD +IRVWK+ S +N + + TLPT D K +NYV
Sbjct: 111 GSKVFTAHQDSRIRVWKVSRRNS---------ENAF-RLVDTLPTTKDYLGKFMKQSNYV 160
Query: 197 QVRRHKKCTWVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAI 256
Q RR+ K W+ H D++ SWD+T K+WR SD +CLES+K AHDDAI
Sbjct: 161 QTRRNHKRLWIEHADSISCLAVHAGIIYSG--SWDKTLKVWRLSDLKCLESIK-AHDDAI 217
Query: 257 NAIVVSKSNDGFVYTGSADTKIKVW-KKLRAALQVNKK-----HSLVQTLE-KHKSAVTA 309
N +V + DG VY+ SAD K+K+W K+ R ++ H L TLE + + +V +
Sbjct: 218 NGLV---AGDGRVYSASADGKVKIWGKEKRKQIESTSSSSSSLHVLKATLEGRAEVSVNS 274
Query: 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369
+ +S DG +Y G D ++ WE+ + +GD + + + RGH A+LC+ VV
Sbjct: 275 VVVSGDGNWVYGGGSDGFVIGWEKKEK----EGDFEEWRLGFE--TRGHNMAVLCMCVVG 328
Query: 370 NLLFSGSSDNTIRIWRR 386
++ SGS+D +I +WRR
Sbjct: 329 EMVCSGSADKSIGLWRR 345
|
|
| TAIR|locus:2085929 AT3G18950 "AT3G18950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 110/327 (33%), Positives = 161/327 (49%)
Query: 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-KLFSAHQD 146
+Y +++G++ D N + + D+ DH +T VK++V+ GD ++F+ HQD
Sbjct: 141 VYSLAASGDLLFTGSDSKN-IRVWK-DLKDHTGFKSTSG--LVKAIVITGDNRIFTGHQD 196
Query: 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206
KIRVW+ K + Y RI +LPTL + TK NYV+VRR K
Sbjct: 197 GKIRVWR-----------GSKRRTGGYSRIGSLPTLKEFLTKSVNPKNYVEVRRRKNVLK 245
Query: 207 VHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND 266
+ H D V SWD+T K+WR SD +CLES++ AHDDAIN V+ D
Sbjct: 246 IRHYDAVSCLSLNEELGLLYSGSWDKTLKVWRLSDSKCLESIQ-AHDDAINT--VAAGFD 302
Query: 267 GFVYTGSADTKIKVWKKLRAALQ-VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325
++TGSAD +KVWK+ LQ KH LV L K ++AVTALA++ V+Y G+ D
Sbjct: 303 DLLFTGSADGTLKVWKR---ELQGKGTKHFLVNVLMKQENAVTALAVNITAAVVYCGSSD 359
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL-LFSGSSDNTIRIW 384
++ WE + Y+ G GH + L +L N+ ++ + D +
Sbjct: 360 GTVNFWEGQK--YLSHGGTLRGHRLAVLCLAAAGSLVLSGGADKNICVWRRNGDGSHSCL 417
Query: 385 RRSSSVTDHQKGYSCLAVLE----GHR 407
S + DH CL +E GHR
Sbjct: 418 ---SVLMDHVGPVKCLTAVEDDGEGHR 441
|
|
| TAIR|locus:2010157 AT1G49450 "AT1G49450" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 108/320 (33%), Positives = 160/320 (50%)
Query: 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-KLFSAHQD 146
+Y +++G++ D N + + D+ D + +T VK++VV D ++F+ HQD
Sbjct: 137 VYSLAASGDLLFTGSDSKN-IRVWK-DLKDFSGFKSTSG--FVKAIVVTRDNRVFTGHQD 192
Query: 147 HKIRVWKIDNNTSAYYSTSGKLKN-KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205
KIRVW+ G KN + Y R+ +LPTL + TK NYV+VRR K
Sbjct: 193 GKIRVWR------------GSKKNPEKYSRVGSLPTLKEFLTKSVNPRNYVEVRRRKNVL 240
Query: 206 WVHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN 265
+ H D V SWD+T K+WR SD +CLES++ AHDDA+N +V
Sbjct: 241 KIRHFDAVSCLSLNEDLGLLYSGSWDKTLKVWRLSDSKCLESIE-AHDDAVNTVV--SGF 297
Query: 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325
D V+TGSAD +KVWK R KH LVQ L K ++AVTALA++ V+Y G+ D
Sbjct: 298 DDLVFTGSADGTLKVWK--REVQGKEMKHVLVQVLMKQENAVTALAVNLTDAVVYCGSSD 355
Query: 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL-LFSGSSDNTIRIW 384
++ WER + Y+ GH + L +L N+ ++ + D +
Sbjct: 356 GTVNFWERQK--YLTHKGTIHGHRMAVLCLATAGSLLLSGGADKNICVWKRNGDGSHTCL 413
Query: 385 RRSSSVTDHQKGYSCLAVLE 404
S + DH+ CLA +E
Sbjct: 414 ---SVLMDHEGPVKCLAAVE 430
|
|
| TAIR|locus:2015423 AT1G47610 "AT1G47610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 90/247 (36%), Positives = 132/247 (53%)
Query: 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-KLFSAHQD 146
+Y ++ ++ D NNY+ + ++ + + + N VK++V+ + K+F+ HQD
Sbjct: 27 IYSLAATNDLLYTGSD-NNYIRVWK-NLNEFSGFKS--NSGLVKAIVISREAKVFTGHQD 82
Query: 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206
KIRVWK TS K + Y R +LP L D +NYV+VRR + W
Sbjct: 83 GKIRVWK----------TSSK-NPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALW 131
Query: 207 VHHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND 266
+ H D V SWDRT K+WR D +C+ES+K AHDDA+N++ ++S
Sbjct: 132 IKHSDAVSCLSLAEDQGLLYSASWDRTVKVWRIHDLKCIESIK-AHDDAVNSVTTAES-- 188
Query: 267 GFVYTGSADTKIKVWKK-LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325
V+TGSAD +KVWK+ +R HSL QTL K +SAVTAL T +YSG+ D
Sbjct: 189 -LVFTGSADGTVKVWKREIRGK---RTAHSLFQTLLKQESAVTALV--TSHMAVYSGSSD 242
Query: 326 RSILVWE 332
++ WE
Sbjct: 243 GAVNFWE 249
|
|
| TAIR|locus:2116194 AT4G34380 "AT4G34380" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 99/320 (30%), Positives = 164/320 (51%)
Query: 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDH 147
+Y +++G++ D N + + ++ +HA ++ +K++V+ GD++F+ HQD
Sbjct: 128 IYSLAASGDLLYTGSDSKN-IRVWK-NLKEHAGFKSSSG--LIKAIVIFGDRIFTGHQDG 183
Query: 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207
KIR+WK+ GK ++R+ TLPT ++++VRR++
Sbjct: 184 KIRIWKVSKRKP------GK-----HKRVGTLPTFKSMVKSSVNPKHFMEVRRNRNSVKT 232
Query: 208 HHVDTVXXXXXXXXXXXXXXTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG 267
H D V +SWD T K+WR +D +CLES+ +AHDDAIN+++ D
Sbjct: 233 KHNDAVSSLSLDVELGLLYSSSWDTTIKVWRIADSKCLESI-HAHDDAINSVM--SGFDD 289
Query: 268 FVYTGSADTKIKVWKKLRAALQ-VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR 326
V+TGSAD +KVWK+ LQ KH+L Q L K ++AVTALA+ + +++Y G+ D
Sbjct: 290 LVFTGSADGTVKVWKR---ELQGKGTKHTLAQVLLKQENAVTALAVKSQSSIVYCGSSDG 346
Query: 327 SILVWERDQGNYIVDGDDDSGHM--VLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIW 384
+ WER + ++ G GH VL + G+ +L + N+ D + +
Sbjct: 347 LVNYWERSKRSFT--GGILKGHKSAVLCLGIAGNL--LLSGSADKNICV-WRRDPSDKSH 401
Query: 385 RRSSSVTDHQKGYSCLAVLE 404
+ S +T H CLAV E
Sbjct: 402 QCLSVLTGHMGPVKCLAVEE 421
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00028914001 | SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (420 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00034540001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (346 aa) | • | 0.489 | |||||||
 | GSVIVG00020679001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (338 aa) | • | 0.487 | |||||||
 | GSVIVG00018072001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (326 aa) | • | 0.486 | |||||||
 | GSVIVG00003267001 | SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (283 aa) | • | 0.460 | |||||||
 | GSVIVG00034167001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (405 aa) | • | 0.458 | |||||||
 | GSVIVG00038827001 | SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (332 aa) | • | 0.453 | |||||||
 | GSVIVG00027473001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (339 aa) | • | 0.453 | |||||||
 | GSVIVG00001457001 | SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (337 aa) | • | 0.402 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 450 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-43 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-32 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-29 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-24 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-11 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.002 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 7e-43
Identities = 98/382 (25%), Positives = 138/382 (36%), Gaps = 101/382 (26%)
Query: 71 VKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128
+KG++ + +A + GKLL GS +G I+ W+ T TG
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD---------LETGELLRTLKGHTGPVR 55
Query: 129 AVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTK 188
V + G L S D IR+W ++
Sbjct: 56 DVAASAD-GTYLASGSSDKTIRLWDLETGECVR--------------------------- 87
Query: 189 CFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248
T H VS++A S DG +L S+S D+T K+W +CL +
Sbjct: 88 ----------------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-TT 130
Query: 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308
H D +N++ S FV + S D IK+W + V TL H V
Sbjct: 131 LRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWD--------LRTGKCVATLTGHTGEVN 181
Query: 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV- 367
++A S DG L S + D +I +W+ G G LRGH + +A
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLWDLSTGK-------------CLGTLRGHENGVNSVAFS 228
Query: 368 -VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNS 426
LL SGS D TIR+W D + G C+ L GH V L
Sbjct: 229 PDGYLLASGSEDGTIRVW-------DLRTG-ECVQTLSGHTNSVTSL------------- 267
Query: 427 DHSSTSFLVYSGSLDCEIKIWQ 448
S + SGS D I+IW
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 8e-32
Identities = 65/250 (26%), Positives = 104/250 (41%), Gaps = 46/250 (18%)
Query: 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262
+ T H V+ +A S DG LL + S D T K+W L ++K H + + S
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAAS 60
Query: 263 KSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322
++ ++ +GS+D I++W + V+TL H S V+++A S DG +L S
Sbjct: 61 -ADGTYLASGSSDKTIRLWDL--------ETGECVRTLTGHTSYVSSVAFSPDGRILSSS 111
Query: 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGSSDNT 380
+ D++I VW+ + G LRGHT + +A + S S D T
Sbjct: 112 SRDKTIKVWDVETGK-------------CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158
Query: 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440
I++W + C+A L GH V + S + S S
Sbjct: 159 IKLWDLRTG--------KCVATLTGHTGEVNSVAF-------------SPDGEKLLSSSS 197
Query: 441 DCEIKIWQIR 450
D IK+W +
Sbjct: 198 DGTIKLWDLS 207
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 6e-29
Identities = 66/244 (27%), Positives = 100/244 (40%), Gaps = 46/244 (18%)
Query: 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H V +A S+DG+ L S S D+T ++W C+ ++ H ++++ S
Sbjct: 50 HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGR-I 107
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSI 328
+ + S D IKVW ++ K + TL H V ++A S DGT + S + D +I
Sbjct: 108 LSSSSRDKTIKVWD-----VETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159
Query: 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386
+W D L GHT + +A L S SSD TI++W
Sbjct: 160 KLW-------------DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW-- 204
Query: 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446
D G CL L GH V + S +L+ SGS D I++
Sbjct: 205 -----DLSTG-KCLGTLRGHENGVNSV-------------AFSPDGYLLASGSEDGTIRV 245
Query: 447 WQIR 450
W +R
Sbjct: 246 WDLR 249
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-24
Identities = 70/273 (25%), Positives = 115/273 (42%), Gaps = 71/273 (26%)
Query: 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANV 121
+C TL G++SY+ S+A G++L S + I+ W+ + +
Sbjct: 84 ECVRTLT--GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL------------T 129
Query: 122 VATGNGDAVKSLVVLGDKLF--SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATL 179
G+ D V S+ D F S+ QD I++W + + +ATL
Sbjct: 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG----------------KCVATL 173
Query: 180 PTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239
H V+++A S DG L S+S D T K+W
Sbjct: 174 T---------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206
Query: 240 SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299
S +CL +++ H++ +N++ S + +GS D I+VW + VQT
Sbjct: 207 STGKCLGTLR-GHENGVNSVAFSPDGY-LLASGSEDGTIRVWDL--------RTGECVQT 256
Query: 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
L H ++VT+LA S DG L SG+ D +I +W+
Sbjct: 257 LSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.9 bits (211), Expect = 4e-18
Identities = 83/322 (25%), Positives = 135/322 (41%), Gaps = 47/322 (14%)
Query: 137 GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196
G+ L S D I++W +DN S G + + + P N + V
Sbjct: 77 GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136
Query: 197 QVRRHKKC-----TWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSDFRCLESVKN 250
++ T H ++V++LA S DG LL S S D T K+W + L ++
Sbjct: 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310
H D ++++ S + +GS+D I++W ++ L TL H +V +
Sbjct: 197 -HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD-------LSTGKLLRSTLSGHSDSVVS- 247
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--V 368
+ S DG++L SG+ D +I +W+ + ++ L GH+ ++L +A
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR------------TLSGHSSSVLSVAFSPD 295
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
LL SGSSD T+R+W + L+GH PV L S
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLT------LKGHEGPVSSL------------SFS 337
Query: 429 SSTSFLVYSGSLDCEIKIWQIR 450
S LV GS D I++W +R
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLR 359
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 36/157 (22%)
Query: 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355
L +TL+ H VT +A S DG +L +G+ D +I VW D L L
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW-------------DLETGELLRTL 47
Query: 356 RGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCL 413
+GHT + +A L SGSSD TIR+W + C+ L GH V +
Sbjct: 48 KGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--------ECVRTLTGHTSYVSSV 99
Query: 414 TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
S ++ S S D IK+W +
Sbjct: 100 AF-------------SPDGRILSSSSRDKTIKVWDVE 123
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.2 bits (191), Expect = 2e-15
Identities = 98/444 (22%), Positives = 179/444 (40%), Gaps = 43/444 (9%)
Query: 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVK 72
N + S L+ SL+S L S + + + ++L ++
Sbjct: 3 DNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLR 62
Query: 73 GNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNGDA 129
G+ I S+A + G+LL GSS+G I+ W+ D + + +A + D
Sbjct: 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122
Query: 130 VKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKC 189
L+ D +++W + + G ++ +A P +
Sbjct: 123 NSILLASSSL------DGTVKLWDLSTPGKLIRTLEGH--SESVTSLAFSPDGKLLASGS 174
Query: 190 FLANNYVQVRRHKKCTWVH----HVDTVSALALSSDGSLLYST-SWDRTFKIWRTSDFRC 244
L +++ + + H D VS+LA S DG LL ++ S D T ++W S +
Sbjct: 175 SLDGT-IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233
Query: 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304
L S + H D + + + + +GS+D I++W + SL++TL H
Sbjct: 234 LRSTLSGHSD--SVVSSFSPDGSLLASGSSDGTIRLWD-------LRSSSSLLRTLSGHS 284
Query: 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364
S+V ++A S DG +L SG+ D ++ +W D ++G ++ L+GH +
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLW-----------DLETGKLLSSLTLKGHEGPVSS 333
Query: 365 LAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQ-KGYSCLAVLEGHRRPVKCLTAVVDSD 420
L+ + L+ GS D TIR+W + +G+S VL P + + +D
Sbjct: 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS--NVLSVSFSPDGRVVSSGSTD 391
Query: 421 YSNRNSDHSSTSFLVYSGSLDCEI 444
+ R D S+ S L +
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRV 415
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.7 bits (156), Expect = 3e-11
Identities = 73/332 (21%), Positives = 132/332 (39%), Gaps = 47/332 (14%)
Query: 70 KVKGNSSYIPSLAIAGK---LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGN 126
++G+S + SLA + L G S +G I+ W+ ++ + +++ + +
Sbjct: 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPD 209
Query: 127 GDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRF 186
G + + S D IR+W + + SG + + + +
Sbjct: 210 GGLL---------IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV-----SSFSPDGSL 255
Query: 187 TKCFLANNYVQV---RRHKKCTWVH--HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD 241
++ +++ R H +V ++A S DG LL S S D T ++W
Sbjct: 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315
Query: 242 FRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300
+ L S+ H+ ++++ S V GS D I++W + L
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW-------DLRTGKPLKTL- 367
Query: 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360
+ S V +++ S DG V+ SG+ D ++ +W D L L GHT
Sbjct: 368 -EGHSNVLSVSFSPDGRVVSSGSTDGTVRLW-------------DLSTGSLLRNLDGHTS 413
Query: 361 AILCLAVVSN--LLFSGSSDNTIRIWRRSSSV 390
+ L + L SGSSDNTIR+W +S+
Sbjct: 414 RVTSLDFSPDGKSLASGSSDNTIRLWDLKTSL 445
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-05
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
L++TL+ H VT++A S DG L SG+ D +I +W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 7e-05
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
L++TL+ H VT++A S DG +L SG+ D ++ VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 2e-04
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 355 LRGHTKAILCLAVV--SNLLFSGSSDNTIRIW 384
L+GHT + +A L SGS D TI++W
Sbjct: 8 LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 355 LRGHTKAILCLAVV--SNLLFSGSSDNTIRIW 384
L+GHT + +A NLL SGS D T+R+W
Sbjct: 7 LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 2e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIW 237
T H V+++A S DG+LL S S D T ++W
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 3e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIW 237
T H V+++A S DG L S S D T K+W
Sbjct: 7 TLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 56/222 (25%)
Query: 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHD-----------DAINAIVV 261
V A+ DG + ++ KI F C +K+ D ++ I
Sbjct: 486 VCAIGFDRDGEFFATAGVNKKIKI-----FECESIIKDGRDIHYPVVELASRSKLSGICW 540
Query: 262 SKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLY 320
+ V + + + ++VW R+ LV +++H+ V ++ S+ D T+L
Sbjct: 541 NSYIKSQVASSNFEGVVQVWDVARS--------QLVTEMKEHEKRVWSIDYSSADPTLLA 592
Query: 321 SGACDRSILVWERDQGNYI-----------VDGDDDSG---------HMVLKGALR---- 356
SG+ D S+ +W +QG I V +SG H V LR
Sbjct: 593 SGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL 652
Query: 357 ------GHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVT 391
GH+K + + V S+ L S S+DNT+++W S S++
Sbjct: 653 PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS 694
|
Length = 793 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.003
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 19/100 (19%)
Query: 355 LRGHTKAILCLA---VVSNLLFSGSSDNTIRIW--RRSSSVTDHQKGYSCLAVLEGHRRP 409
L+GHT +IL L S +L SGS D TIR+W + K C +L+GH++
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC--ILKGHKKK 127
Query: 410 VKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
+ + D++ N +++ S D + IW I
Sbjct: 128 ISII------DWNPMN------YYIMCSSGFDSFVNIWDI 155
|
Length = 568 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 450 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.98 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.97 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.97 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.97 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.97 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.97 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.96 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.94 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.94 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.93 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.93 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.92 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.89 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.88 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.88 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.88 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.86 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.85 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.85 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.85 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.84 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.82 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.81 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.79 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.79 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.78 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.78 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.77 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.76 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.74 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.71 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.71 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.7 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.66 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.65 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.65 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.62 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.62 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.61 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.57 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.56 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.55 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.53 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.51 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.49 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.47 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.46 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.44 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.43 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.43 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.42 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.42 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.41 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.41 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.41 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.4 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.39 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.38 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.38 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.37 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.35 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.35 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.32 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.32 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.32 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.27 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.27 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.26 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.26 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.24 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.21 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.14 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.14 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.14 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.11 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.1 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.08 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.08 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.07 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.06 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.06 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.06 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.04 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.02 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.01 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.0 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.0 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.98 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.97 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.97 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.96 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.96 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.94 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.92 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.92 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.91 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.9 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.88 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.87 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.86 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.86 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.86 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.83 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.82 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.8 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.8 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.79 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.76 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.72 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.68 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.68 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.65 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.61 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.59 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.56 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.54 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.54 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.52 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.48 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.48 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.46 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.44 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.44 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.44 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.39 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.37 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.36 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.35 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.23 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.21 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.11 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.09 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.02 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.02 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.01 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.0 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.99 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.9 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.9 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.89 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.84 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.81 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.81 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.79 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.77 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.73 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.68 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.66 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.66 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.63 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.53 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.51 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.5 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.47 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.46 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.44 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.42 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.41 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.4 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.31 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.29 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.29 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.24 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.23 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.22 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.19 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.17 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.16 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.16 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.04 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.02 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.97 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.93 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.84 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.82 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.81 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.8 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.75 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.7 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.67 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.66 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.56 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.52 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.52 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.5 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.42 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.29 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.25 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.22 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.2 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.2 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.14 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.91 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.55 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.5 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 95.48 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 95.45 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.39 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.37 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.37 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.35 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.27 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.25 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.11 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.03 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.93 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.93 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.84 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.51 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.48 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.45 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.4 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.38 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.3 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.13 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 94.12 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.05 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.88 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.73 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.66 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.24 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.06 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.6 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 92.39 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.32 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.14 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.12 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.09 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.95 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.88 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 91.19 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 91.03 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.77 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 90.62 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 90.6 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 90.28 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.16 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 90.1 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 89.93 | |
| PRK10115 | 686 | protease 2; Provisional | 89.85 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 89.59 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 89.58 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 88.96 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.6 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 88.43 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 88.43 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 88.42 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 88.35 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 88.19 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 88.12 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.09 | |
| PF12341 | 27 | DUF3639: Protein of unknown function (DUF3639) ; I | 87.68 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.43 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 87.21 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 87.19 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 86.05 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 85.46 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 85.16 | |
| PLN02153 | 341 | epithiospecifier protein | 84.93 | |
| PLN02153 | 341 | epithiospecifier protein | 84.68 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 84.33 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 84.0 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 83.84 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 83.49 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 83.45 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 83.28 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 82.88 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 82.83 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 82.12 | |
| KOG2006 | 1023 | consensus WD40 repeat protein [General function pr | 81.66 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 81.49 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 81.15 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 81.03 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 80.84 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 80.2 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=341.43 Aligned_cols=316 Identities=25% Similarity=0.457 Sum_probs=274.7
Q ss_pred cCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEe
Q 041325 14 NKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGG 91 (450)
Q Consensus 14 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tg 91 (450)
+-+..|+|++..+.+++.++++++ +...+..+..+.+ ||..+|.|++| ||+.||+|
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~--------------------WD~~TeTp~~t~K--gH~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRL--------------------WDLDTETPLFTCK--GHKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEe--------------------eccCCCCcceeec--CCccEEEEEEECCCcchhhcc
Confidence 345567777777777777776665 4444556777788 99999999999 99999999
Q ss_pred eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-------EEEEeCCCeEEEEEcCCCceeEEec
Q 041325 92 SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-------LFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 92 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-------l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
+.||+|++||..+++..-. .+.+|...|++|+|.|-. |++++.||.|+|||+..+
T Consensus 176 ~~dg~I~lwdpktg~~~g~-----------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------- 237 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGR-----------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------- 237 (480)
T ss_pred ccCCeEEEecCCCCCcccc-----------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-------
Confidence 9999999999999886544 477999999999997533 999999999999999988
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 244 (450)
.++. .+.+|+.+|+|+.|..+| ++++|+.|++|++|+...|++
T Consensus 238 ---------~~~~---------------------------~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 238 ---------TCVR---------------------------TLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred ---------eEEE---------------------------EeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH
Confidence 3333 344899999999998765 899999999999999999999
Q ss_pred EEEeecccccceEEEEEe-----------ecC------------------------CcEEEEEcCCCcEEEEeCcchhhh
Q 041325 245 LESVKNAHDDAINAIVVS-----------KSN------------------------DGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 245 ~~~~~~~~~~~v~~~~~~-----------~~~------------------------~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
.+.++ +|...|+.++.+ |.+ ...+++|+.|.++.+|+....+
T Consensus 281 ~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-- 357 (480)
T KOG0271|consen 281 CRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-- 357 (480)
T ss_pred HHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc--
Confidence 99999 999999999887 111 1259999999999999975432
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
+++..+.+|..-|..+.|+||++++++++-|..|++||.++|+.+ ..+.+|-..|..++|+.
T Consensus 358 -----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-------------asfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 358 -----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-------------ASFRGHVAAVYQVAWSA 419 (480)
T ss_pred -----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh-------------hhhhhccceeEEEEecc
Confidence 478888999999999999999999999999999999999999866 78999999999999996
Q ss_pred C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 370 N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 370 ~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+ +|++|+.|.++++|++++. +....+.+|...|.++.|+|||. .+++|+.|..+++|
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tk--------Kl~~DLpGh~DEVf~vDwspDG~-------------rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTK--------KLKQDLPGHADEVFAVDWSPDGQ-------------RVASGGKDKVLRLW 478 (480)
T ss_pred CccEEEEcCCCceEEEEEeeee--------eecccCCCCCceEEEEEecCCCc-------------eeecCCCceEEEee
Confidence 6 9999999999999999984 78888999999999999999999 99999999999999
Q ss_pred E
Q 041325 448 Q 448 (450)
Q Consensus 448 ~ 448 (450)
.
T Consensus 479 ~ 479 (480)
T KOG0271|consen 479 R 479 (480)
T ss_pred c
Confidence 5
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-51 Score=331.42 Aligned_cols=288 Identities=27% Similarity=0.470 Sum_probs=259.2
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+|...+. ||.++|.|++| +|..|+||+.|.++|+||+.+..+... ..+|...|.|++|+||+
T Consensus 105 trCssS~~--GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t------------~KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 105 TRCSSSIA--GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT------------CKGHKNWVLCVAWSPDGK 170 (480)
T ss_pred ceeccccC--CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee------------ecCCccEEEEEEECCCcc
Confidence 35667777 99999999999 899999999999999999999887766 78999999999999999
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.||+|++||..++++ ....+.+|...|++++|
T Consensus 171 ~iASG~~dg~I~lwdpktg~~------------------------------------------~g~~l~gH~K~It~Law 208 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQ------------------------------------------IGRALRGHKKWITALAW 208 (480)
T ss_pred hhhccccCCeEEEecCCCCCc------------------------------------------ccccccCcccceeEEee
Confidence 99999999999999988842 22345589999999999
Q ss_pred cc-----CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 219 SS-----DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 219 ~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.| ..++|++++.||.|+|||+..++++..+. +|..+|+|+.|- +++++++|+.|++|++|+...+.
T Consensus 209 ep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~------ 279 (480)
T KOG0271|consen 209 EPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGK------ 279 (480)
T ss_pred cccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEc--CCceEEecCCCceEEEEEccchh------
Confidence 76 56799999999999999999999999998 999999999998 78899999999999999997777
Q ss_pred chhhhhHhhcccceEEEEEc-----------CCC-------------------------CEEEEeeCCCcEEEEEcCCCc
Q 041325 294 HSLVQTLEKHKSAVTALALS-----------TDG-------------------------TVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~-----------~~~-------------------------~~l~~g~~dg~i~vwd~~~~~ 337 (450)
+...+.+|...|+.++.+ |.+ ..|++|+.|.++.+|+....+
T Consensus 280 --~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 280 --LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred --HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 899999999999999887 223 359999999999999976543
Q ss_pred eeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 338 YIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
.+...+.+|..-|+.+.|+|+ ++|+++.|..|++||-++| +.+..+.+|-.+|..++|
T Consensus 358 ------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG--------k~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 358 ------------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG--------KFLASFRGHVAAVYQVAW 417 (480)
T ss_pred ------------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc--------chhhhhhhccceeEEEEe
Confidence 234688999999999999976 9999999999999999986 789999999999999999
Q ss_pred EecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 416 VVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.|.+ +|++||.|.++++|++|
T Consensus 418 saDsR-------------LlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 418 SADSR-------------LLVSGSKDSTLKVWDVR 439 (480)
T ss_pred ccCcc-------------EEEEcCCCceEEEEEee
Confidence 99999 99999999999999986
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=328.98 Aligned_cols=277 Identities=24% Similarity=0.412 Sum_probs=253.7
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC----eEEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD----KLFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~~~d 146 (450)
|.+.+|..+.| |++.|+|||.+|.++||+......+.. +.+|...|.++.|+|. .++||+.|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~------------l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQT------------LRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEE------------EeccccceeeEEEccCCCccceeeeccC
Confidence 77889999999 899999999999999999988865555 8899999999999987 29999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
|++++|++++. . +...+.+|...|..++|+|+|++|+
T Consensus 241 gtvklw~~~~e----------------~---------------------------~l~~l~gH~~RVs~VafHPsG~~L~ 277 (459)
T KOG0272|consen 241 GTVKLWKLSQE----------------T---------------------------PLQDLEGHLARVSRVAFHPSGKFLG 277 (459)
T ss_pred CceeeeccCCC----------------c---------------------------chhhhhcchhhheeeeecCCCceee
Confidence 99999999987 2 2334458999999999999999999
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+++.|.+-++||++++..+.... +|...|.+++|++++. ++++|+.|..-+|||++++. .+..+.+|..+
T Consensus 278 TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr--------~im~L~gH~k~ 347 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGR--------CIMFLAGHIKE 347 (459)
T ss_pred ecccccchhhcccccchhhHhhc-ccccccceeEecCCCc-eeeccCccchhheeecccCc--------EEEEecccccc
Confidence 99999999999999988777666 9999999999999555 99999999999999999988 78889999999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEEE
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRI 383 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~i 383 (450)
|.+++|+|+|..|++|+.|++++|||++..+.+ ..+.+|..-|+.+.|.+ .+|+|++.|++++|
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l-------------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL-------------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccc-------------eecccccchhhheEecccCCeEEEEcccCcceee
Confidence 999999999999999999999999999987644 68899999999999984 49999999999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
|...+ +.++..+.||.+.|.++..+++++ +++|++.|.+|++|.
T Consensus 415 Ws~~~--------~~~~ksLaGHe~kV~s~Dis~d~~-------------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 415 WSTRT--------WSPLKSLAGHEGKVISLDISPDSQ-------------AIATSSFDRTIKLWR 458 (459)
T ss_pred ecCCC--------cccchhhcCCccceEEEEeccCCc-------------eEEEeccCceeeecc
Confidence 99776 689999999999999999999999 999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=282.56 Aligned_cols=292 Identities=20% Similarity=0.317 Sum_probs=253.8
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+..++|+ ||.+.|.++.| |.++|++++.||.+.|||.-+...+.. +.-....|..++|+|.+
T Consensus 46 ~~rr~Lk--GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha------------ipl~s~WVMtCA~sPSg~~ 111 (343)
T KOG0286|consen 46 RTRRTLK--GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA------------IPLPSSWVMTCAYSPSGNF 111 (343)
T ss_pred eeEEEec--ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE------------EecCceeEEEEEECCCCCe
Confidence 3447777 99999999999 899999999999999999888775555 44566799999999877
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++|+.|+...||++...... . .......+.+|.+.+.|+.|-
T Consensus 112 VAcGGLdN~Csiy~ls~~d~~----------------g---------------------~~~v~r~l~gHtgylScC~f~ 154 (343)
T KOG0286|consen 112 VACGGLDNKCSIYPLSTRDAE----------------G---------------------NVRVSRELAGHTGYLSCCRFL 154 (343)
T ss_pred EEecCcCceeEEEeccccccc----------------c---------------------cceeeeeecCccceeEEEEEc
Confidence 899999999999999865210 0 002233566899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+|+ .|++++.|.+..+||+++++.+..+. +|.+.|.++.+.|...+.+++|+-|+..++||++.+. ..+.
T Consensus 155 dD~-~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--------c~qt 224 (343)
T KOG0286|consen 155 DDN-HILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--------CVQT 224 (343)
T ss_pred CCC-ceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--------eeEe
Confidence 865 58899999999999999999999999 9999999999999777799999999999999998877 8999
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 377 (450)
|.+|++.|++++|.|+|.-+++|+.|++.++||++..+.+.. .....-..+|++++|+ |++|++|..
T Consensus 225 F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-----------ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 225 FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-----------YSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-----------eccCcccCCceeEEEcccccEEEeeec
Confidence 999999999999999999999999999999999998776532 2233344678999997 889999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
|..+.+||.-.+ +.+..+.+|...|+++..+|||. .++|||.|.++|||.
T Consensus 294 d~~c~vWDtlk~--------e~vg~L~GHeNRvScl~~s~DG~-------------av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 294 DFTCNVWDTLKG--------ERVGVLAGHENRVSCLGVSPDGM-------------AVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEeecccc--------ceEEEeeccCCeeEEEEECCCCc-------------EEEecchhHheeecC
Confidence 999999998764 77888999999999999999999 999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-43 Score=274.10 Aligned_cols=300 Identities=22% Similarity=0.376 Sum_probs=242.5
Q ss_pred eeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+.-+|+ +|.+.|+.++. +.+.+++++.|..+.+|++...... -......+.||...|..+..++++
T Consensus 6 ~l~~tl~--gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-------~G~~~r~~~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 6 VLRGTLE--GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-------YGVPVRRLTGHSHFVSDVVLSSDGN 76 (315)
T ss_pred eeeeeec--CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-------cCceeeeeeccceEecceEEccCCc
Confidence 4555677 99999999999 5889999999999999998765211 111223488999999999999777
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
.++++.|+++++||+.+++ ....+.+|...|.+++|
T Consensus 77 ~alS~swD~~lrlWDl~~g~-------------------------------------------~t~~f~GH~~dVlsva~ 113 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGE-------------------------------------------STRRFVGHTKDVLSVAF 113 (315)
T ss_pred eEEeccccceEEEEEecCCc-------------------------------------------EEEEEEecCCceEEEEe
Confidence 8999999999999999983 34456689999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC-CcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN-DGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
++|.+.+++|+.|.+|++||+............+.+-|.|+.|+|.. +.+|++++.|+.|++||+++.+ ..
T Consensus 114 s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--------l~ 185 (315)
T KOG0279|consen 114 STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--------LR 185 (315)
T ss_pred cCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc--------hh
Confidence 99999999999999999999975444443332337899999999975 4579999999999999997766 78
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEe
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGS 376 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~ 376 (450)
..+.+|.+.++.++++|||.++++|+.||.+.+||++.++.+ ....|...|.+++|+|+ +.++..
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l--------------ysl~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL--------------YSLEAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee--------------EeccCCCeEeeEEecCCceeEeec
Confidence 889999999999999999999999999999999999998865 23457789999999988 555666
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.+..|+|||+.++........+.... .+...-...+++|+++|. .|++|-.|+.|++|.+.
T Consensus 252 t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~-------------tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 252 TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ-------------TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc-------------EEEeeecCCcEEEEEee
Confidence 67779999999863322211111111 122233467889999999 99999999999999974
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=262.79 Aligned_cols=276 Identities=21% Similarity=0.393 Sum_probs=235.8
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.-+|++++.|.+||+|...+|.+... +....+.|+.|...|++ .++++....||+||+++...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT------------iqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np---- 73 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT------------IQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP---- 73 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE------------EecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCC----
Confidence 45799999999999999999998887 44556789999999988 44444457899999998832
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
.+...+.+|.+.|+++.|..+|+++++|++||+++|||++...
T Consensus 74 -------------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~ 116 (311)
T KOG0315|consen 74 -------------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS 116 (311)
T ss_pred -------------------------------------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc
Confidence 3556677899999999999999999999999999999999988
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
+.+.++ +..+|+++..+| +...|++|..+|.|++||+....+. ...+......|.++...|||.+++.+.
T Consensus 117 ~qR~~~--~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~-------~~liPe~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 117 CQRNYQ--HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCT-------HELIPEDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred cchhcc--CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccc-------cccCCCCCcceeeEEEcCCCcEEEEec
Confidence 888886 779999999999 5568999999999999999776421 111223447899999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEE
Q 041325 324 CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA 401 (450)
Q Consensus 324 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 401 (450)
..|..++|++-.... ...+.+...++.|.+-++.+.++++ +|+++|.|.+++||+.+.- ++...
T Consensus 187 nkG~cyvW~l~~~~~-------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-------~kle~ 252 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQT-------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-------FKLEL 252 (311)
T ss_pred CCccEEEEEccCCCc-------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-------eeeEE
Confidence 999999999986432 3445677889999999999999865 9999999999999998862 46777
Q ss_pred EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 402 VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 402 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.+++|...+...+|+.|+. ||+||+.|+.+++|+++
T Consensus 253 ~l~gh~rWvWdc~FS~dg~-------------YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGE-------------YLVTASSDHTARLWDLS 288 (311)
T ss_pred EeecCCceEEeeeeccCcc-------------EEEecCCCCceeecccc
Confidence 8899999999999999999 99999999999999974
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=280.85 Aligned_cols=294 Identities=22% Similarity=0.397 Sum_probs=256.1
Q ss_pred CCCCCccceeeeEEeecCCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 56 QAPAASEHQCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
.+-+..++++.+.++ ||.++|.|+++| ..+|+||+.|++|+|||+.++++... +.||...|..+
T Consensus 134 rPeWHapwKl~rVi~--gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt------------ltGhi~~vr~v 199 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVIS--GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT------------LTGHIETVRGV 199 (460)
T ss_pred CccccCcceehhhhh--hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe------------ecchhheeeee
Confidence 345667788999999 999999999995 78999999999999999999998776 88999999999
Q ss_pred EEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 134 VVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 134 ~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
++++.. +++++.|+.|+.||++..+ ....+.+|-.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nk-------------------------------------------vIR~YhGHlS 236 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNK-------------------------------------------VIRHYHGHLS 236 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhh-------------------------------------------hHHHhccccc
Confidence 999766 9999999999999999872 3334558999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.|.|++.+|.-+.|++|+.|.++++||+++...+..+. +|..+|.++.+.|.+. .+++|+.|++|++||++.++
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agk---- 310 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGK---- 310 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCc----
Confidence 99999999999999999999999999999999999998 9999999999998544 89999999999999998887
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
....+..|+..+.+++.+|....+++++.|. |+-|++..+..+ ..+.+|...|++++.+.+
T Consensus 311 ----t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~-------------~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 311 ----TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL-------------QNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred ----eeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchh-------------hccccccceeeeeeeccCc
Confidence 6677778999999999999999999998775 999999988755 668999999999999854
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-----CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-----HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++++|+.+|.+.+||.+++.. ++......+ ....|.+.+|...+. .|+||..|.+|+
T Consensus 373 v~~~G~dng~~~fwdwksg~n-----yQ~~~t~vqpGSl~sEagI~as~fDktg~-------------rlit~eadKtIk 434 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHN-----YQRGQTIVQPGSLESEAGIFASCFDKTGS-------------RLITGEADKTIK 434 (460)
T ss_pred eEEEcCCceEEEEEecCcCcc-----cccccccccCCccccccceeEEeecccCc-------------eEEeccCCcceE
Confidence 999999999999999998632 222221111 234688888888888 899999999999
Q ss_pred EEE
Q 041325 446 IWQ 448 (450)
Q Consensus 446 iw~ 448 (450)
+|+
T Consensus 435 ~~k 437 (460)
T KOG0285|consen 435 MYK 437 (460)
T ss_pred EEe
Confidence 996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=289.34 Aligned_cols=253 Identities=22% Similarity=0.355 Sum_probs=227.9
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
...+.++.+..+.+++|. ||...|.++.| ++.-||||+.||++++|++++..++.. +.+|..
T Consensus 197 G~~kvW~~~~~~~~~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~------------l~gH~~ 262 (459)
T KOG0272|consen 197 GLVKVWSVPQCNLLQTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD------------LEGHLA 262 (459)
T ss_pred CceeEeecCCcceeEEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh------------hhcchh
Confidence 445667777778899999 99999999999 367999999999999999998765555 789999
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
.|..++|+|++ |+|++.|.+-++||++++. .....
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-------------------------------------------ElL~Q 299 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-------------------------------------------ELLLQ 299 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccch-------------------------------------------hhHhh
Confidence 99999999888 9999999999999999883 22233
Q ss_pred ecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 207 VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+|...|.+++|.+||.++++|+.|..-+|||+++++++..+. +|..+|.+|+|+| ++..+++|+.|++++|||++..
T Consensus 300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred cccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECC-CceEEeecCCCCcEEEeeeccc
Confidence 4799999999999999999999999999999999999999998 8999999999998 5558999999999999999877
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
. .+..+.+|.+-|+.+.|+| .|.+|++++.|++++||..++..++ ..+.+|.+.|.++
T Consensus 378 ~--------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~-------------ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 378 S--------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL-------------KSLAGHEGKVISL 436 (459)
T ss_pred c--------cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc-------------hhhcCCccceEEE
Confidence 6 6888999999999999999 7899999999999999999987755 8999999999999
Q ss_pred EEeCC--eEEEEeCCCeEEEee
Q 041325 366 AVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 366 ~~~~~--~l~s~~~dg~v~iwd 385 (450)
..+++ .+++++.|+++++|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 98854 899999999999995
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=260.14 Aligned_cols=297 Identities=24% Similarity=0.408 Sum_probs=242.7
Q ss_pred eeeeEEeecCCCcceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
..+++++ +|.+.|..++|+ |..||||+.|..||+|+...+.-..... +.-.+|+..|.+++|+|.+
T Consensus 5 ~~~~~~~--gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~--------vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 5 ILEQKLS--GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT--------VLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred eeEEeec--CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE--------eccccchheeeeeeecCCCc
Confidence 3456666 999999999994 5599999999999999988533222211 1234899999999998766
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.|.++.||.-..++- +++.++ .+|...|.|++|
T Consensus 75 ~La~aSFD~t~~Iw~k~~~ef--------------ecv~~l---------------------------EGHEnEVK~Vaw 113 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEF--------------ECVATL---------------------------EGHENEVKCVAW 113 (312)
T ss_pred EEEEeeccceEEEeecCCCce--------------eEEeee---------------------------eccccceeEEEE
Confidence 99999999999998776532 444443 489999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
+++|++||+++.|..|-||.+.. .++...++ .|...|..+.|+|..+ +|++++.|++|++|+-.. . ..+.
T Consensus 114 s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~-d----ddW~ 186 (312)
T KOG0645|consen 114 SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDED-D----DDWE 186 (312)
T ss_pred cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCCcc-eeEEeccCCeEEEEeecC-C----CCee
Confidence 99999999999999999999874 45677777 8999999999999555 999999999999998753 2 4667
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSG 375 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 375 (450)
+.+++.+|...|.+++|++.|..|++++.|++++||-..+. ....|...+..++|....|+++
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----------------~~~~~sr~~Y~v~W~~~~IaS~ 249 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----------------LSGMHSRALYDVPWDNGVIASG 249 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----------------cchhcccceEeeeecccceEec
Confidence 89999999999999999999999999999999999986632 2345788999999997799999
Q ss_pred eCCCeEEEeeCCCCccccCCCceeEE-EecCCCcceEEEEEEec-CCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 376 SSDNTIRIWRRSSSVTDHQKGYSCLA-VLEGHRRPVKCLTAVVD-SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~-~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.|+.|++|.-.... ....++.+. .-..|...|++++|.|. .. +|++|++||.|++|.++
T Consensus 250 ggD~~i~lf~~s~~~--d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~-------------~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSP--DEPSWNLLAKKEGAHEVDVNSVQWNPKVSN-------------RLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCC--CCchHHHHHhhhcccccccceEEEcCCCCC-------------ceeecCCCceEEEEEec
Confidence 999999999876421 122233333 34679999999999995 34 89999999999999974
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=274.24 Aligned_cols=309 Identities=23% Similarity=0.397 Sum_probs=270.4
Q ss_pred CCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcc
Q 041325 42 PSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA 119 (450)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~ 119 (450)
+..-...|+.+.+.+.-+.+.+.+.+.+. ||..+|+.+-| +-..+++++.|++|++||..++++...
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~--g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~--------- 145 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLA--GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS--------- 145 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhh--ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh---------
Confidence 44445666666666666666667778888 99999999999 677888899999999999999998665
Q ss_pred eeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
+.||...|.+|+|...+ +++++.|=.+++||.++.. +++.
T Consensus 146 ---LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~---------------~c~k-------------------- 187 (406)
T KOG0295|consen 146 ---LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF---------------RCIK-------------------- 187 (406)
T ss_pred ---hhccccceeEEEEecCccEEEecCCccchhheeHHHHH---------------HHHH--------------------
Confidence 88999999999998555 9999999999999998641 2222
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
.+.+|...|.+++|-|.|+++++++.|.+|+.|++.++-++.++. +|...|..++.+.+ ..++++++.|.+
T Consensus 188 -------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~D-Gti~As~s~dqt 258 (406)
T KOG0295|consen 188 -------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQD-GTIIASCSNDQT 258 (406)
T ss_pred -------HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCC-eeEEEecCCCce
Confidence 233788899999999999999999999999999999999999999 89999999999853 337899999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC---------------CCEEEEeeCCCcEEEEEcCCCceeeeC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD---------------GTVLYSGACDRSILVWERDQGNYIVDG 342 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---------------~~~l~~g~~dg~i~vwd~~~~~~~~~~ 342 (450)
|++|-+.+++ +...+..|+.+|.+++|-|. ++++.+++.|++|++||+.++.++
T Consensus 259 l~vW~~~t~~--------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL--- 327 (406)
T KOG0295|consen 259 LRVWVVATKQ--------CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL--- 327 (406)
T ss_pred EEEEEeccch--------hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---
Confidence 9999997776 77888999999999999763 369999999999999999999877
Q ss_pred CCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 343 DDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.++.+|...|..++|+ |+||+++.+|+++++||+++. +|...+..|..-|+++.|+.+..
T Consensus 328 ----------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--------~cmk~~~ah~hfvt~lDfh~~~p 389 (406)
T KOG0295|consen 328 ----------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--------QCMKTLEAHEHFVTSLDFHKTAP 389 (406)
T ss_pred ----------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--------eeeeccCCCcceeEEEecCCCCc
Confidence 6899999999999999 779999999999999999974 89999999999999999999998
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++||+-|.++++|+=|
T Consensus 390 -------------~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 390 -------------YVVTGSVDQTVKVWECR 406 (406)
T ss_pred -------------eEEeccccceeeeeecC
Confidence 99999999999999743
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=281.33 Aligned_cols=286 Identities=24% Similarity=0.452 Sum_probs=246.6
Q ss_pred eeeEEeecC-CCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEE
Q 041325 65 CSATLKVKG-NSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSA 143 (450)
Q Consensus 65 ~~~~l~~~~-h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~ 143 (450)
.++++.... ....|.|+.+|+..+++|..|++|+|||.++..+... +.||++.|.|+.|...-+++|
T Consensus 186 ~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~------------L~GHtGSVLCLqyd~rviisG 253 (499)
T KOG0281|consen 186 LLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI------------LTGHTGSVLCLQYDERVIVSG 253 (499)
T ss_pred eeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccHHHHHh------------hhcCCCcEEeeeccceEEEec
Confidence 344454322 3468999999999999999999999999999887776 889999999999998889999
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
+.|.+|++||++++ + +...+.+|...|..+.|+ ..
T Consensus 254 SSDsTvrvWDv~tg----------------e---------------------------~l~tlihHceaVLhlrf~--ng 288 (499)
T KOG0281|consen 254 SSDSTVRVWDVNTG----------------E---------------------------PLNTLIHHCEAVLHLRFS--NG 288 (499)
T ss_pred CCCceEEEEeccCC----------------c---------------------------hhhHHhhhcceeEEEEEe--CC
Confidence 99999999999999 2 333445799999999997 56
Q ss_pred EEEEEeCCCcEEEEecCCCeEE---EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCL---ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
++++++.|..|.+||+.....+ +.+. +|...|+.+.|. +.++++++.|.+|++|++.+.+ .++.+
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~e--------fvRtl 356 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCE--------FVRTL 356 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc---cceEEEecCCceEEEEecccee--------eehhh
Confidence 8999999999999999875422 2233 899999999996 4499999999999999998777 89999
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCe
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNT 380 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 380 (450)
.+|+..|.|+.+ .++++++|+.|.+|++||+..|+++ ..+.+|+.-|.|+.|+...+++|+.||+
T Consensus 357 ~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL-------------RvLeGHEeLvRciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 357 NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL-------------RVLEGHEELVRCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred hcccccceehhc--cCeEEEecCCCceEEEEeccccHHH-------------HHHhchHHhhhheeecCceeeeccccce
Confidence 999999999998 6899999999999999999999866 8899999999999999999999999999
Q ss_pred EEEeeCCCCccccC-CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQ-KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|++||+..+..... ...-|+..+..|++.|..+.|..- .+++++.|.+|.|||+
T Consensus 422 ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f---------------qIvsssHddtILiWdF 476 (499)
T KOG0281|consen 422 IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF---------------QIISSSHDDTILIWDF 476 (499)
T ss_pred EEEEecccccCCcccccchHHHhhhhccceeEEEeecce---------------EEEeccCCCeEEEEEc
Confidence 99999998643321 223467778889999999998543 7999999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=281.24 Aligned_cols=277 Identities=23% Similarity=0.371 Sum_probs=239.8
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKI 149 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 149 (450)
-.-.|..+.| +|+.|++|+..|.+.+|+...-....+ +..|..+|.++.|+.+. +++|+.+|.|
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti------------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI------------LQAHDSPVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH------------hhhhcccceeEEEccCCCEEEEcCCCceE
Confidence 3457888888 899999999999999999755443333 67999999999999766 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
++|+..-... ......|...|++++|+|+...|++++
T Consensus 163 KyWqpnmnnV-------------------------------------------k~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 163 KYWQPNMNNV-------------------------------------------KIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred Eecccchhhh-------------------------------------------HHhhHhhhhhhheeccCCCCceeEEec
Confidence 9999875411 111124558999999999988999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.||+|+|||....+....+. +|.-.|.+++|+| ..+++++++.|..|++||.+++. ++.++..|+..|..
T Consensus 200 dDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~--------cl~tlh~HKntVl~ 269 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGS--------CLATLHGHKNTVLA 269 (464)
T ss_pred CCCeEEEEeccCCchhheec-cCCCCcceeccCC-ccceeEEccCCceeEeecCCCcc--------hhhhhhhccceEEE
Confidence 99999999999888877786 9999999999999 56699999999999999998887 89999999999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCeEEEEeCCCeEEEeeC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~ 386 (450)
+.|+|++++|++++.|..++++|+++.+.+ ..+.+|...|+++.|+ ++++.+|+.||.|..|.+
T Consensus 270 ~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-------------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-------------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred EEEcCCCCeeEEccCCceEEEEehhHhHHH-------------HHhhcchhhheeeccccccccceeeccCCCceEEEec
Confidence 999999999999999999999999976644 7889999999999998 469999999999999998
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
... ......-.+|...|++++|+|-|. +|++|+.|.++++|.
T Consensus 337 ~~~-------~p~~~i~~AHd~~iwsl~~hPlGh-------------il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 337 GLE-------EPLGEIPPAHDGEIWSLAYHPLGH-------------ILATGSNDRTVRFWT 378 (464)
T ss_pred ccc-------ccccCCCcccccceeeeeccccce-------------eEeecCCCcceeeec
Confidence 732 122233467999999999999999 999999999999995
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=287.97 Aligned_cols=349 Identities=23% Similarity=0.414 Sum_probs=267.2
Q ss_pred cccCCCCCccceeeeEEeecC-CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc
Q 041325 53 FRKQAPAASEHQCSATLKVKG-NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~-h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
-....+..+++++++.++ + |.++|.-++| .+.+|++|+.||.|+|||+..+.+... +.||++.
T Consensus 84 ~llrv~~L~tgk~irswK--a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~------------fkG~gGv 149 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWK--AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS------------FKGHGGV 149 (775)
T ss_pred ceEEEEEcccchHhHhHh--hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEE------------ecCCCce
Confidence 334567888888889888 7 9999999999 489999999999999999999998877 8899999
Q ss_pred eEEEEEeCCe----EEEEeCCCeEEEEEcCCCce--------------eEEeccCc-------c------cccceeeeee
Q 041325 130 VKSLVVLGDK----LFSAHQDHKIRVWKIDNNTS--------------AYYSTSGK-------L------KNKYYERIAT 178 (450)
Q Consensus 130 v~~l~~~~~~----l~s~~~dg~i~iw~~~~~~~--------------~~~~~~~~-------~------~~~~~~~~~~ 178 (450)
|.++.|+|+. |++|+.|+++++||++.... ..+..... . .-..++...+
T Consensus 150 Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~ 229 (775)
T KOG0319|consen 150 VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKT 229 (775)
T ss_pred EEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhe
Confidence 9999999876 89999999999999985533 00000000 0 0001111111
Q ss_pred ccCCCcc---------------eeEeeecCc-------------------------------------------eEEEe-
Q 041325 179 LPTLNDR---------------FTKCFLANN-------------------------------------------YVQVR- 199 (450)
Q Consensus 179 ~~~~~~~---------------~~~~~~~~~-------------------------------------------~~~~~- 199 (450)
+|..+.. +.......+ .+.+.
T Consensus 230 lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d 309 (775)
T KOG0319|consen 230 LPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYD 309 (775)
T ss_pred echhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEE
Confidence 1111110 000000000 00000
Q ss_pred ------------------------------------------e---cceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 200 ------------------------------------------R---HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 200 ------------------------------------------~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
. ..-..+.+|.+.|.+++...+|.+|++|+.|.++
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceE
Confidence 0 0001256899999999977788999999999999
Q ss_pred EEEecCCCe----EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc-cccchhhhhHhhcccceEE
Q 041325 235 KIWRTSDFR----CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV-NKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 235 ~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 309 (450)
++|.++++. ++.... +|...|.+++++.....+|++++.|+++++|++...+... ............|...|++
T Consensus 390 ilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 999885433 333344 8999999999987677789999999999999997733111 1112233456679999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
++++|+.++|++|+.|.+.+||+++... ....+.+|...|.|+.|++. .++|+|.|++|+||.+.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~-------------l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLR-------------LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred eEecCCCceEEecccccceeeecccCce-------------EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 9999999999999999999999999655 44899999999999999965 99999999999999999
Q ss_pred CCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+ +.|+.++.||...|..+.|..++. .|+|++.||-|+||+++
T Consensus 536 ~--------fSClkT~eGH~~aVlra~F~~~~~-------------qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 536 T--------FSCLKTFEGHTSAVLRASFIRNGK-------------QLISAGADGLIKLWNIK 577 (775)
T ss_pred c--------ceeeeeecCccceeEeeeeeeCCc-------------EEEeccCCCcEEEEecc
Confidence 7 599999999999999999999999 99999999999999985
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=268.82 Aligned_cols=351 Identities=17% Similarity=0.254 Sum_probs=270.0
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
.......+.-++++...+++ .|..-|.|+.| ||.++||.+.||.|.+||=.+++.+...... .+|.+
T Consensus 168 dDn~v~ffeGPPFKFk~s~r--~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~---------~aHkG 236 (603)
T KOG0318|consen 168 DDNTVAFFEGPPFKFKSSFR--EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS---------DAHKG 236 (603)
T ss_pred CCCeEEEeeCCCeeeeeccc--ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCC---------CCccc
Confidence 34555667777888888998 99999999999 8999999999999999999999988774432 28999
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCc-ccccceeeeeeccCCCcceeEeeecCceEEEe----ec
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGK-LKNKYYERIATLPTLNDRFTKCFLANNYVQVR----RH 201 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 201 (450)
.|.+|+|+||. +++++.|.+++|||+.+.........+. ...+.+-++.. ++.+. ....++.+.+. ..
T Consensus 237 sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq----kd~lI-tVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ----KDHLI-TVSLSGTINYLNPSDPS 311 (603)
T ss_pred cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe----CCeEE-EEEcCcEEEEecccCCC
Confidence 99999999988 9999999999999999986654433322 22222222222 22222 22222333221 12
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
....+.+|...|+++..++++++|++|+.||.|.-||..++..-+.....|...|.+++.+ ..+.+++.+.|.++++.
T Consensus 312 ~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVI 389 (603)
T ss_pred hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec--CCCcEEEEecCCeEEEE
Confidence 4556789999999999999999999999999999999999988777656899999999988 55689999999999999
Q ss_pred eCcchhhhcc------ccchh-----------------hhhHh--------hcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 041325 282 KKLRAALQVN------KKHSL-----------------VQTLE--------KHKSAVTALALSTDGTVLYSGACDRSILV 330 (450)
Q Consensus 282 d~~~~~~~~~------~~~~~-----------------~~~~~--------~~~~~i~~l~~~~~~~~l~~g~~dg~i~v 330 (450)
++..+..... .++.. +..++ ...-...+++++|+++.+++|+.||.|+|
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv 469 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV 469 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence 8754332110 00000 00001 01234578999999999999999999999
Q ss_pred EEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc
Q 041325 331 WERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR 408 (450)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 408 (450)
|.+...... ....+..|.++|++++|+++ +|++|...+.+.+||+.+.. .....+.-|+.
T Consensus 470 ysl~g~~l~-----------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~-------~~~~~w~FHta 531 (603)
T KOG0318|consen 470 YSLSGDELK-----------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE-------VKTNRWAFHTA 531 (603)
T ss_pred EEecCCccc-----------ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc-------eecceeeeeee
Confidence 999865432 33466789999999999976 99999999999999999741 23344555999
Q ss_pred ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 409 PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 409 ~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.|++++|+|+.. ++||||.|-.|.||+++
T Consensus 532 kI~~~aWsP~n~-------------~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 532 KINCVAWSPNNK-------------LVATGSLDTNVIIYSVK 560 (603)
T ss_pred eEEEEEeCCCce-------------EEEeccccceEEEEEcc
Confidence 999999999999 99999999999999984
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=274.30 Aligned_cols=289 Identities=25% Similarity=0.319 Sum_probs=241.4
Q ss_pred CCCcceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCC--CcceeEEecCCCceEEEEEeCCe--EEEEeC
Q 041325 73 GNSSYIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVG--DHANVVATGNGDAVKSLVVLGDK--LFSAHQ 145 (450)
Q Consensus 73 ~h~~~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 145 (450)
.|..+|.+.+|+ ...+++|+.|-..++|++....-......... ......-......|++|+|+.++ |++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 699999999993 56899999999999999875111100000000 00000011234689999999555 999999
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEE
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL 225 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 225 (450)
||.+++|+..... ...+..|.++|.++.|+.+|++|
T Consensus 256 ~G~~riw~~~G~l--------------------------------------------~~tl~~HkgPI~slKWnk~G~yi 291 (524)
T KOG0273|consen 256 DGEARIWNKDGNL--------------------------------------------ISTLGQHKGPIFSLKWNKKGTYI 291 (524)
T ss_pred CcEEEEEecCchh--------------------------------------------hhhhhccCCceEEEEEcCCCCEE
Confidence 9999999998762 22344699999999999999999
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
++++.|+++.+||..+++....+. .|..+...+.|. ++..+++++.|+.|+++.+.... ++.++.+|.+
T Consensus 292 lS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~--------P~~t~~GH~g 360 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR--------PVKTFIGHHG 360 (524)
T ss_pred EeccCCccEEEEeccCceEEEeee-eccCCccceEEe--cCceEeecCCCceEEEEEecCCC--------cceeeecccC
Confidence 999999999999999999988887 677776888998 56689999999999999986655 8889999999
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-----------eEEE
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-----------LLFS 374 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~l~s 374 (450)
+|.++.|+|.|.+|++++.|++++||........ ..+.+|...|..+.|+|. .+++
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~-------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV-------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCcch-------------hhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence 9999999999999999999999999998876544 678899999999999742 8999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
++.|++|++||+..+ .++..+..|..+|.+|+|+|++. ++|+|+.||.|++|+.+
T Consensus 428 as~dstV~lwdv~~g--------v~i~~f~kH~~pVysvafS~~g~-------------ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESG--------VPIHTLMKHQEPVYSVAFSPNGR-------------YLASGSLDGCVHIWSTK 482 (524)
T ss_pred eecCCeEEEEEccCC--------ceeEeeccCCCceEEEEecCCCc-------------EEEecCCCCeeEecccc
Confidence 999999999999985 88999999999999999999999 99999999999999875
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=289.39 Aligned_cols=291 Identities=24% Similarity=0.414 Sum_probs=243.4
Q ss_pred cceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeee-------------------ecCCCCcce
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNIT-------------------STDVGDHAN 120 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~-------------------~~~~~~~~~ 120 (450)
+-.|..++. .-...++|..| |+.+||.|-.|..|++|.+...++.... .........
T Consensus 367 pSic~YT~~--nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 367 PSICMYTFH--NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred CcEEEEEEE--EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 346777777 66778999999 6889999999999999999853321110 011122233
Q ss_pred eEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 121 VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
..+.||.++|....|+|+. |+++++|+++|+|.+++.. ++
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s----------------~~---------------------- 486 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS----------------CL---------------------- 486 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccce----------------eE----------------------
Confidence 4588999999999999988 9999999999999999883 22
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
..+.+|..+|.++.|+|.|-+||+++.|++.++|......+++.+. +|...|.|+.|+| +..++++|+.|.+|
T Consensus 487 -----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~cv~FHP-Ns~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 487 -----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVDCVSFHP-NSNYVATGSSDRTV 559 (707)
T ss_pred -----EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-ccccccceEEECC-cccccccCCCCceE
Confidence 2344799999999999999999999999999999999999999888 9999999999999 56699999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+||+.++. .++.|.+|.++|.+++|+|+|++|++|+.||.|.+||+.+++.+ ..+.+|
T Consensus 560 RlWDv~~G~--------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-------------~~l~~H 618 (707)
T KOG0263|consen 560 RLWDVSTGN--------SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV-------------KQLKGH 618 (707)
T ss_pred EEEEcCCCc--------EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch-------------hhhhcc
Confidence 999998877 78889999999999999999999999999999999999998855 788999
Q ss_pred ccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccc----------------cCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 359 TKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTD----------------HQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~----------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.+.|.++.|+ +..|++|+.|..|++||+...... ......++..+.....+|.+|.|....-
T Consensus 619 t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl 698 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL 698 (707)
T ss_pred cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce
Confidence 9999999998 669999999999999998754222 1122235666666777899999887665
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=243.12 Aligned_cols=281 Identities=20% Similarity=0.350 Sum_probs=239.3
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
+..+...++.|.++++ ...+.|..+.. |++.||+|+. -.||+||++++.... ...+.+|...|++
T Consensus 22 IRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~P----------v~t~e~h~kNVta 88 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQ--HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNP----------VATFEGHTKNVTA 88 (311)
T ss_pred eeeeehhcCeEEEEEe--cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCc----------eeEEeccCCceEE
Confidence 3456777899999998 67789999999 8889998876 689999999877432 2458899999999
Q ss_pred EEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 133 LVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 133 l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
+.|..++ +++|++||+++|||++.... ... ..|.
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~----------------qR~----------------------------~~~~ 124 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSC----------------QRN----------------------------YQHN 124 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCccc----------------chh----------------------------ccCC
Confidence 9998666 99999999999999998622 111 1477
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+|+++..+|+...|++|..+|.|++||+.+..+...+.......|.++...|++. +++.+...|..++|++.... .
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~--~ 201 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQ--T 201 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCC--c
Confidence 89999999999999999999999999999998888888767778999999999555 89999999999999997743 2
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-- 368 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 368 (450)
.....++..++.|++-+..+.+|||+++|++++.|.+++||+.++. +.....+.+|...+...+|+
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~------------~kle~~l~gh~rWvWdc~FS~d 269 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF------------FKLELVLTGHQRWVWDCAFSAD 269 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc------------eeeEEEeecCCceEEeeeeccC
Confidence 2455677889999999999999999999999999999999999865 12456788999999999998
Q ss_pred CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 369 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
+.||+||+.|+.+++|++..+ +.+....+|.....|++.
T Consensus 270 g~YlvTassd~~~rlW~~~~~--------k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 270 GEYLVTASSDHTARLWDLSAG--------KEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ccEEEecCCCCceeecccccC--------ceeeecCCcccccEEEEe
Confidence 459999999999999999985 678889999988887765
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=252.17 Aligned_cols=283 Identities=25% Similarity=0.354 Sum_probs=236.0
Q ss_pred cCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC
Q 041325 72 KGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH 147 (450)
Q Consensus 72 ~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 147 (450)
.||.+.|..+.| +|..||||+.|..|.+|++....... ..+.+|.++|..+.|..+. +++++.|+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-----------~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-----------WVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-----------eeeccccceeEeeeeccCCCEEEEecCCc
Confidence 399999999999 89999999999999999965433211 2367999999999999777 99999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLY 226 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 226 (450)
+|+.||+++++. ...+.+|.+-|+++.-+.-| .++.
T Consensus 113 ~v~~wD~~tG~~-------------------------------------------~rk~k~h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 113 TVRGWDAETGKR-------------------------------------------IRKHKGHTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred eEEEEeccccee-------------------------------------------eehhccccceeeecCccccCCeEEE
Confidence 999999999932 23344788889988855544 4667
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+++.|+++++||+++...++.+. .+..++++.|....+ .+.+|+-|+.|++||++.++ ....+.+|...
T Consensus 150 SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~-qv~sggIdn~ikvWd~r~~d--------~~~~lsGh~Dt 218 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSD-QVISGGIDNDIKVWDLRKND--------GLYTLSGHADT 218 (338)
T ss_pred ecCCCceEEEEeecccchhhccc--cceeEEEEEeccccc-ceeeccccCceeeeccccCc--------ceEEeecccCc
Confidence 78899999999999999888885 678899999987444 78999999999999998877 78899999999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc----cceEEEEEeCC--eEEEEeCCCe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT----KAILCLAVVSN--LLFSGSSDNT 380 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~--~l~s~~~dg~ 380 (450)
|+.+..+|+|.++.+-+.|.++++||++....- ......+.+|. ......+|+++ .+.+|+.|+.
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~---------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~ 289 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS---------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF 289 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCC---------CceEEEeecchhhhhhhcceeeccCCCCccccccccce
Confidence 999999999999999999999999999843211 11123333332 33466778755 8999999999
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++||..+ ...+..+.||.+.|++++|+|... +|.+++.|.+|++=++
T Consensus 290 vyvwd~~~--------r~~lyklpGh~gsvn~~~Fhp~e~-------------iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 290 VYVWDTTS--------RRILYKLPGHYGSVNEVDFHPTEP-------------IILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEeeccc--------ccEEEEcCCcceeEEEeeecCCCc-------------EEEEeccCceeEeecc
Confidence 99999886 478999999999999999999999 9999999999988554
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=270.99 Aligned_cols=370 Identities=22% Similarity=0.337 Sum_probs=269.0
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
+++..+.|+|++...+....+--.-. -.+...+. ...++.+.+++. ||-..|+++.| |.++|+
T Consensus 97 ~~v~~i~fSPng~~fav~~gn~lqiw----------~~P~~~~~---~~~pFvl~r~~~--g~fddi~si~Ws~DSr~l~ 161 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGNLLQIW----------HAPGEIKN---EFNPFVLHRTYL--GHFDDITSIDWSDDSRLLV 161 (893)
T ss_pred CccceEEECCCCcEEEEEecceeEEE----------ecCcchhc---ccCcceEeeeec--CCccceeEEEeccCCceEE
Confidence 45667888888888777654432211 00001111 233456777888 99999999999 799999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEe----
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYS---- 163 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~---- 163 (450)
+|+.|-.+++|+++..+-... ..+.+|.+.|.+.-|..+. +++.+.||.+.+|...........
T Consensus 162 ~gsrD~s~rl~~v~~~k~~~~----------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd 231 (893)
T KOG0291|consen 162 TGSRDLSARLFGVDGNKNLFT----------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD 231 (893)
T ss_pred eccccceEEEEEeccccccce----------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccc
Confidence 999999999999987664222 2478999999999998665 999999999999998722110000
Q ss_pred ------------ccCcccccce--------------------------------------------eeeeeccCCCccee
Q 041325 164 ------------TSGKLKNKYY--------------------------------------------ERIATLPTLNDRFT 187 (450)
Q Consensus 164 ------------~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~ 187 (450)
.+.......+ ..+..+...+..+.
T Consensus 232 ~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~ 311 (893)
T KOG0291|consen 232 EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKIL 311 (893)
T ss_pred ccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceee
Confidence 0000000000 00000111100110
Q ss_pred Eeeec--Cc----------eEEEeec----ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 188 KCFLA--NN----------YVQVRRH----KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 188 ~~~~~--~~----------~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
.+... +. .+.++.. -.....+|...+++++++|||+++++|+.||.|+|||...+-|..++. .
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-e 390 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-E 390 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-c
Confidence 00000 11 1111111 122346899999999999999999999999999999999999999999 8
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeCCC-cEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGACDR-SIL 329 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg-~i~ 329 (450)
|...|+.+.|+. .++.+++.+-||+|+.||+.... ..+++.. ..-...|++..|.|.++.+|+.|. .|.
T Consensus 391 Hts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYr--------NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 391 HTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYR--------NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred CCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccc--------eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 999999999998 44589999999999999996544 4444443 234567899999999999999887 599
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~ 407 (450)
+|++.+|+.+ ..+.+|.++|.+++|+ ++.|+++|+|.+||+||+-.. ...+..+. +.
T Consensus 462 vWS~qTGqll-------------DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s-------~~~vEtl~-i~ 520 (893)
T KOG0291|consen 462 VWSVQTGQLL-------------DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS-------SGTVETLE-IR 520 (893)
T ss_pred EEEeecCeee-------------ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc-------CceeeeEe-ec
Confidence 9999999865 7899999999998877 669999999999999998753 22344444 67
Q ss_pred cceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 408 ~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..+..++|.|+|+ -|+.+..||.|.+||++
T Consensus 521 sdvl~vsfrPdG~-------------elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 521 SDVLAVSFRPDGK-------------ELAVATLDGQITFFDIK 550 (893)
T ss_pred cceeEEEEcCCCC-------------eEEEEEecceEEEEEhh
Confidence 7899999999999 89999999999999974
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=262.04 Aligned_cols=307 Identities=23% Similarity=0.350 Sum_probs=247.2
Q ss_pred CCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcc
Q 041325 42 PSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA 119 (450)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~ 119 (450)
.+...+....+.+.++|+ +..++|. .|.+.|.-+.| +|++|||++.|.+..+|.+.........
T Consensus 197 dsvsll~Dh~c~~~qip~----qt~qil~--~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-------- 262 (519)
T KOG0293|consen 197 DSVSLLSDHFCGRLQIPS----QTWQILQ--DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK-------- 262 (519)
T ss_pred chhhhhhhcccCcccCCc----hhhhhHh--hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee--------
Confidence 334445555667777777 7778888 99999999999 8999999999999999987665543321
Q ss_pred eeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
..+.+|..+|..+.|+||. |++|+.|..+.+||+.++.. ...++.
T Consensus 263 -~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~----------------~~~y~~---------------- 309 (519)
T KOG0293|consen 263 -KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL----------------RHLYPS---------------- 309 (519)
T ss_pred -eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh----------------hhhccc----------------
Confidence 2377999999999999887 99999999999999999832 222221
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
++...+.+++|.|||..+++|+.|+.+..||+. |..+...+......|.+++..+++. .+++.+.|..
T Consensus 310 ----------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk-~vl~v~~d~~ 377 (519)
T KOG0293|consen 310 ----------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK-YVLLVTVDKK 377 (519)
T ss_pred ----------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc-EEEEEecccc
Confidence 245689999999999999999999999999997 4555555534456799999998555 6777779999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
|++|+.++.. ... +.....+|++++.+.|++++++.-.+..+++||+...+.+ ..+.+
T Consensus 378 i~l~~~e~~~--------dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv-------------~kY~G 435 (519)
T KOG0293|consen 378 IRLYNREARV--------DRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV-------------RKYFG 435 (519)
T ss_pred eeeechhhhh--------hhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH-------------HHhhc
Confidence 9999986543 121 3335678999999999999999999999999999976543 66777
Q ss_pred Cccc--eEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 358 HTKA--ILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 358 ~~~~--v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
|... +..-+|. ..++++||.|+.|+||+..++ +++..+.||...|++++|+|...+
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--------kll~~LsGHs~~vNcVswNP~~p~----------- 496 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--------KLLAVLSGHSKTVNCVSWNPADPE----------- 496 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--------ceeEeecCCcceeeEEecCCCCHH-----------
Confidence 7654 2333343 249999999999999999885 899999999999999999999886
Q ss_pred EEEEEcccCCcEEEEEe
Q 041325 433 FLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l 449 (450)
++|+||+||+||||..
T Consensus 497 -m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 497 -MFASASDDGTIRIWGP 512 (519)
T ss_pred -HhhccCCCCeEEEecC
Confidence 8999999999999975
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=244.07 Aligned_cols=257 Identities=21% Similarity=0.381 Sum_probs=212.9
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL 136 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 136 (450)
....+.+++.|+ ||...|..+.. ||++.++++.||++|+||+.+++.... +.+|...|.+++|+
T Consensus 49 d~~~G~~~r~~~--GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~------------f~GH~~dVlsva~s 114 (315)
T KOG0279|consen 49 DIKYGVPVRRLT--GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR------------FVGHTKDVLSVAFS 114 (315)
T ss_pred ccccCceeeeee--ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE------------EEecCCceEEEEec
Confidence 566678899999 99999999988 899999999999999999999976665 88999999999999
Q ss_pred CCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 137 GDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 137 ~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+|. +++|+.|++|++|+...... .++.. ..+.+.|.
T Consensus 115 ~dn~qivSGSrDkTiklwnt~g~ck-----------------~t~~~-------------------------~~~~~WVs 152 (315)
T KOG0279|consen 115 TDNRQIVSGSRDKTIKLWNTLGVCK-----------------YTIHE-------------------------DSHREWVS 152 (315)
T ss_pred CCCceeecCCCcceeeeeeecccEE-----------------EEEec-------------------------CCCcCcEE
Confidence 877 99999999999999987621 11100 02377999
Q ss_pred EEEEccC--CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 215 ALALSSD--GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 215 ~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
|+.|+|+ ..+|++++.|++|++||+++.+....+. +|.+.++.++++|++. ++++|+.||.+.+||++.++
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k----- 225 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK----- 225 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc-----
Confidence 9999997 7899999999999999999988888887 8999999999999555 89999999999999998877
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CC
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SN 370 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 370 (450)
.+..+ .+...|.+++|+|+...|+.+. +..|+|||+.++..+.++..+.... ..+.......+++|+ |.
T Consensus 226 ---~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~----s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 226 ---NLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP----SSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred ---eeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc----ccccCCcEEEEEEEcCCCc
Confidence 55555 4789999999999876666554 5569999999998886555443221 222233445778888 67
Q ss_pred eEEEEeCCCeEEEeeCC
Q 041325 371 LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~ 387 (450)
.|++|..|+.|++|.+.
T Consensus 297 tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeeecCCcEEEEEee
Confidence 99999999999999875
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=236.74 Aligned_cols=265 Identities=18% Similarity=0.356 Sum_probs=228.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.+++|. +|.++|.++.| ||+|.+|++.|.+|++||...+.+++. +.+|...|..++.+.|.
T Consensus 8 kr~~~l~--~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt------------YsghG~EVlD~~~s~Dnsk 73 (307)
T KOG0316|consen 8 KRLSILD--CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT------------YSGHGHEVLDAALSSDNSK 73 (307)
T ss_pred hhceeec--ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee------------ecCCCceeeeccccccccc
Confidence 4567777 99999999999 899999999999999999999998887 78999999999988665
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++|+.|+.|.+||+++++ ....+.+|...|+.+.|+
T Consensus 74 f~s~GgDk~v~vwDV~TGk-------------------------------------------v~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGK-------------------------------------------VDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred cccCCCCceEEEEEcccCe-------------------------------------------eeeecccccceeeEEEec
Confidence 9999999999999999993 344566899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
.+...+++|+.|..+++||.++. ++++.+. .....|.++... +..+++|+.||+++.||++.+. ..
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~--------l~ 178 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGT--------LS 178 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEec---ccEEEeeccCCcEEEEEeecce--------ee
Confidence 99999999999999999999864 5677776 677889999986 4589999999999999998876 33
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE--Ee--CCeEE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA--VV--SNLLF 373 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~--~~~l~ 373 (450)
... ...+|++++|++|++..++++.|++|++.|-.+|+.+ ...++|...-..+. +. ...++
T Consensus 179 sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL-------------~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 179 SDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL-------------KSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred hhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHH-------------HHhcccccceeeeeeeecccceeEE
Confidence 333 4578999999999999999999999999999999865 67888876654333 22 34999
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc-eEEEEEEecCC
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP-VKCLTAVVDSD 420 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~ 420 (450)
+|++||.|++||+... ..+..+..|... |.++.++|...
T Consensus 244 sgSEDG~Vy~wdLvd~--------~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDE--------TQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred eccCCceEEEEEeccc--------eeeeeeccCCceeEEeeecccCcc
Confidence 9999999999999874 667778878777 89999999987
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=281.85 Aligned_cols=269 Identities=22% Similarity=0.384 Sum_probs=222.5
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
-...++|..|+++. ||.|-.|..|++|.+...+............. .+...+.. .+..........
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~-----d~~sad~~-------~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI-----DTESADVD-------VDMLDDDSSGTS 444 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccc-----cccccchh-------hhhccccCCcee
Confidence 34589999999888 88888999999999986532211111111000 00000000 000000011233
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
..+.+|.++|....|+|+.++|++++.|+++|+|.+.+..++..++ +|..+|+.+.|+| .+.++++++.|++.++|..
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAP-RGYYFATASHDQTARLWST 522 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecC-CceEEEecCCCceeeeeec
Confidence 4477999999999999999999999999999999999999999999 9999999999998 5668999999999999998
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
...+ +.+.+.+|.+.|.|+.|+|+..|+++|+.|.++++||..+|..+ +.+.+|.++|+
T Consensus 523 d~~~--------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-------------RiF~GH~~~V~ 581 (707)
T KOG0263|consen 523 DHNK--------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-------------RIFTGHKGPVT 581 (707)
T ss_pred ccCC--------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-------------EEecCCCCceE
Confidence 7665 89999999999999999999999999999999999999999765 78899999999
Q ss_pred EEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 364 CLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 364 ~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+++|+ |.+|++|+.||.|++||+.++ ..+..+.+|++.|.++.|+.++. .||+||.|
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~--------~~v~~l~~Ht~ti~SlsFS~dg~-------------vLasgg~D 640 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANG--------SLVKQLKGHTGTIYSLSFSRDGN-------------VLASGGAD 640 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCC--------cchhhhhcccCceeEEEEecCCC-------------EEEecCCC
Confidence 99998 559999999999999999985 78889999999999999999999 99999999
Q ss_pred CcEEEEEeC
Q 041325 442 CEIKIWQIR 450 (450)
Q Consensus 442 g~i~iw~l~ 450 (450)
.+|++||+.
T Consensus 641 nsV~lWD~~ 649 (707)
T KOG0263|consen 641 NSVRLWDLT 649 (707)
T ss_pred CeEEEEEch
Confidence 999999974
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=270.32 Aligned_cols=302 Identities=21% Similarity=0.363 Sum_probs=250.9
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEEe--CCEEEEeeCC-CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAIA--GKLLYGGSSN-GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~d--~~~l~tgs~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
.+..+...+++.+. -...+|..++|+ |.+||.|+.. |.+-||+..+...+.. ..+|...++++
T Consensus 291 LyelP~f~lih~LS--is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------QQgH~~~i~~l 356 (893)
T KOG0291|consen 291 LYELPDFNLIHSLS--ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------QQGHSDRITSL 356 (893)
T ss_pred EEecCCceEEEEee--cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee------------ccccccceeeE
Confidence 56667778999999 667789999995 9999998875 8999999998876655 56999999999
Q ss_pred EEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 134 VVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 134 ~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+++||+ +++|+.||.|++||..++ -|+.++. .|+.
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~Sg----------------fC~vTFt---------------------------eHts 393 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSG----------------FCFVTFT---------------------------EHTS 393 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCc----------------eEEEEec---------------------------cCCC
Confidence 999996 999999999999999998 5555554 7999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-cEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-KIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~ 290 (450)
.|+.+.|+..|+.+++.+.||+|+.||+...+..+++..+......|++..|.+. ++++|+.|. .|.+|++.+++
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq--- 469 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ--- 469 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe---
Confidence 9999999999999999999999999999999999999877777788888887554 677777665 69999999888
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-- 368 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 368 (450)
++..+.+|+++|.+++|+|++..|++|+.|.+|++||+-..... .....+...+++++|.
T Consensus 470 -----llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-------------vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 470 -----LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-------------VETLEIRSDVLAVSFRPD 531 (893)
T ss_pred -----eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-------------eeeEeeccceeEEEEcCC
Confidence 89999999999999999999999999999999999998754321 2233456778899998
Q ss_pred CCeEEEEeCCCeEEEeeCCCCcccc--------CCCce----eEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 369 SNLLFSGSSDNTIRIWRRSSSVTDH--------QKGYS----CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 369 ~~~l~s~~~dg~v~iwd~~~~~~~~--------~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
|+.|+++.-||.|.+||.+.+.... ..+.. ....-.......+.+++++||. +++
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-------------~Il 598 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-------------CIL 598 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC-------------EEE
Confidence 5699999999999999988653210 00011 1111122346899999999999 999
Q ss_pred EcccCCcEEEEEeC
Q 041325 437 SGSLDCEIKIWQIR 450 (450)
Q Consensus 437 s~~~Dg~i~iw~l~ 450 (450)
+||....|+||+++
T Consensus 599 AgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 599 AGGESNSICIYDVP 612 (893)
T ss_pred ecCCcccEEEEECc
Confidence 99999999999974
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=264.88 Aligned_cols=282 Identities=34% Similarity=0.607 Sum_probs=239.6
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF 141 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~ 141 (450)
+++++ +|..+|++++| ++++|++++.||.|++|++.+++.... +..|...+..+.|.++. ++
T Consensus 2 ~~~~~--~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 2 RRTLK--GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred chHhc--ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE------------EecCCcceeEEEECCCCCEEE
Confidence 34566 99999999999 679999999999999999988764443 56888899999999775 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.||.|++|++...+ ....+..|...+.++.|+++
T Consensus 68 ~~~~~~~i~i~~~~~~~-------------------------------------------~~~~~~~~~~~i~~~~~~~~ 104 (289)
T cd00200 68 SGSSDKTIRLWDLETGE-------------------------------------------CVRTLTGHTSYVSSVAFSPD 104 (289)
T ss_pred EEcCCCeEEEEEcCccc-------------------------------------------ceEEEeccCCcEEEEEEcCC
Confidence 99999999999998752 11223357778999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
++++++++.|+.|.+||+.+++....+. .|...+.++.++|. ..++++++.||.|++||++.++ ....+.
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~ 174 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGK--------CVATLT 174 (289)
T ss_pred CCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccc--------cceeEe
Confidence 8888888889999999999888888887 78889999999985 5577777779999999997655 555666
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
.|...+.+++|+|+++.+++++.|+.|++||++.++.+ ..+..|...+.++.|++ .++++++.||
T Consensus 175 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL-------------GTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred cCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee-------------cchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 78889999999999999999999999999999976644 45557888999999986 4777777799
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.|++||+.++ .....+..|...|.+++|++++. +|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~-------------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTG--------ECVQTLSGHTNSVTSLAWSPDGK-------------RLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCc--------eeEEEccccCCcEEEEEECCCCC-------------EEEEecCCCeEEecC
Confidence 9999999863 56677778999999999999988 899999999999996
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=254.37 Aligned_cols=287 Identities=25% Similarity=0.438 Sum_probs=238.1
Q ss_pred eeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~-- 139 (450)
++++-+ -|.++|.++...+++|+||+.||.+++||..... ... ..||.++|.+++|. +..
T Consensus 97 ~pl~~~---~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~-~~~------------~~Ght~~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 97 KPLQCF---LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKS-IKT------------IVGHTGPIKSVAWVIKNSSSC 160 (423)
T ss_pred Cccccc---cchhhhhhhcccCceEEEeecCCeeEEEecCCce-EEE------------EecCCcceeeeEEEecCCccc
Confidence 444444 5999999999999999999999999999976543 333 67999999999986 222
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++++.|.++++|.++.+.... .......+|...|.++..
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~---------------------------------------~~~~~~~GHk~~V~sVsv 201 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKV---------------------------------------KALKVCRGHKRSVDSVSV 201 (423)
T ss_pred eEEEecCCceEEEEEecCchhhh---------------------------------------hHHhHhcccccceeEEEe
Confidence 9999999999999998874311 011122379999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC-------------------------CeEEEEeecccccceEEEEEeecCCcEEEEEc
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSD-------------------------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
.++|..+++|+.|..|.||+... +.++..+. +|..+|.++.|++ ...+++++
T Consensus 202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~d--~~v~yS~S 278 (423)
T KOG0313|consen 202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVWSD--ATVIYSVS 278 (423)
T ss_pred cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEEcC--CCceEeec
Confidence 99999999999999999999321 22344455 8999999999995 66899999
Q ss_pred CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
.|.+|+.||+.++. ....+. .+..+.++.++|..++|++|+.|..|++||.+++.- ....+
T Consensus 279 wDHTIk~WDletg~--------~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g----------s~v~~ 339 (423)
T KOG0313|consen 279 WDHTIKVWDLETGG--------LKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG----------SVVSQ 339 (423)
T ss_pred ccceEEEEEeeccc--------ceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCC----------ceeEE
Confidence 99999999998877 444443 457789999999999999999999999999997632 23567
Q ss_pred cccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCC
Q 041325 354 ALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
.+.+|.+.|.++.|++. +|++|+.|+++++||+++. ..++..+.+|...|.++.|...+
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-------k~plydI~~h~DKvl~vdW~~~~----------- 401 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-------KAPLYDIAGHNDKVLSVDWNEGG----------- 401 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-------CCcceeeccCCceEEEEeccCCc-----------
Confidence 89999999999999954 9999999999999999984 35889999999999999997665
Q ss_pred ceEEEEEcccCCcEEEEE
Q 041325 431 TSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~iw~ 448 (450)
++++||.|.+|+|+.
T Consensus 402 ---~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 ---LIVSGGADNKLRIFK 416 (423)
T ss_pred ---eEEeccCcceEEEec
Confidence 699999999999985
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=278.64 Aligned_cols=298 Identities=24% Similarity=0.377 Sum_probs=254.5
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
....+...+.++.+.+- |-.+.|..|.| +.++||.++..+.+|+++..+..+. ++.||...|
T Consensus 304 nl~l~d~~~l~i~k~iv--G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-------------ii~GH~e~v 368 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQIV--GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-------------IIPGHTEAV 368 (775)
T ss_pred eEEEEEccccEEehhhc--CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-------------EEeCchhhe
Confidence 34455677888888888 99999999999 5799999999999999988776654 367999999
Q ss_pred EEEE-Ee-CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLV-VL-GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~-~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
.++. |+ ++.|+||+.|+++++|.++.+.... .......+
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~---------------------------------------~~~a~~~g 409 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS---------------------------------------LCVAQANG 409 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchh---------------------------------------hhhhhhcc
Confidence 9999 43 4459999999999999996553210 01112337
Q ss_pred CCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEE---EE-----eecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 209 HVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCL---ES-----VKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 209 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~---~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
|+..|.+++++.. ...|++++.|+++++|++...+.. .. ....|...|++++++| ++.++++|+.|++.+
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAK 488 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEeccccccee
Confidence 9999999999774 468999999999999999762211 11 1237899999999999 566999999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+|+++... ....+.+|...|+++.|+|..+.+++++.|++|+||.+.+..++ .++.+|.
T Consensus 489 iW~le~~~--------l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-------------kT~eGH~ 547 (775)
T KOG0319|consen 489 IWDLEQLR--------LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-------------KTFEGHT 547 (775)
T ss_pred eecccCce--------EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee-------------eeecCcc
Confidence 99997555 88899999999999999999999999999999999999998766 7999999
Q ss_pred cceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
..|....|- +..|++++.||.+++|+++++ .|+..+.+|...|++++.++... +++|
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~--------eC~~tlD~H~DrvWaL~~~~~~~-------------~~~t 606 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTN--------ECEMTLDAHNDRVWALSVSPLLD-------------MFVT 606 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccch--------hhhhhhhhccceeEEEeecCccc-------------eeEe
Confidence 999999996 569999999999999999985 89999999999999999999999 9999
Q ss_pred cccCCcEEEEE
Q 041325 438 GSLDCEIKIWQ 448 (450)
Q Consensus 438 ~~~Dg~i~iw~ 448 (450)
|+.||.|.+|.
T Consensus 607 gg~Dg~i~~wk 617 (775)
T KOG0319|consen 607 GGGDGRIIFWK 617 (775)
T ss_pred cCCCeEEEEee
Confidence 99999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=257.51 Aligned_cols=265 Identities=23% Similarity=0.381 Sum_probs=230.7
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
......++.....++++.|. ||++.|.|+.||.+.|++|+.|.+|+|||+++++++.. +.+|...|
T Consensus 215 rDnTikiWD~n~~~c~~~L~--GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~t------------lihHceaV 280 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILT--GHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNT------------LIHHCEAV 280 (499)
T ss_pred ccCceEEeccccHHHHHhhh--cCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhH------------Hhhhccee
Confidence 33445677888889999999 99999999999999999999999999999999998877 78999999
Q ss_pred EEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 131 KSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 131 ~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
..+.|+++.+++++.|.++.+||+..... ......+.+|.
T Consensus 281 Lhlrf~ng~mvtcSkDrsiaVWdm~sps~----------------------------------------it~rrVLvGHr 320 (499)
T KOG0281|consen 281 LHLRFSNGYMVTCSKDRSIAVWDMASPTD----------------------------------------ITLRRVLVGHR 320 (499)
T ss_pred EEEEEeCCEEEEecCCceeEEEeccCchH----------------------------------------HHHHHHHhhhh
Confidence 99999999999999999999999987621 01122455899
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
..|+.+.|+ .+++++++.|.+|++|++.++++++.+. +|...|.|+.+. +.++++|+.|.+|++||+..+.
T Consensus 321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~--- 391 (499)
T KOG0281|consen 321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA--- 391 (499)
T ss_pred hheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cccccceehhcc---CeEEEecCCCceEEEEeccccH---
Confidence 999999997 4599999999999999999999999998 999999999885 6699999999999999998887
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+++.+++|+.-|.++.| |.+.|++|..||+|+|||+..+...- ..........+..|++.|..+.|+..
T Consensus 392 -----cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr----a~~~~~Cl~~lv~hsgRVFrLQFD~f 460 (499)
T KOG0281|consen 392 -----CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR----APASTLCLRTLVEHSGRVFRLQFDEF 460 (499)
T ss_pred -----HHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCc----ccccchHHHhhhhccceeEEEeecce
Confidence 89999999999999999 57899999999999999998764210 01112244567789999999999999
Q ss_pred eEEEEeCCCeEEEeeCCCC
Q 041325 371 LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~ 389 (450)
.+++++.|.+|.|||+..+
T Consensus 461 qIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEEeccCCCeEEEEEcCCC
Confidence 9999999999999999875
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=253.69 Aligned_cols=274 Identities=21% Similarity=0.335 Sum_probs=236.0
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEE
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIR 150 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 150 (450)
...|++++| +|.+||+|+.||.++||+........ +..|.++|.+|.|+.++ |++++.||++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~t-------------l~~HkgPI~slKWnk~G~yilS~~vD~tti 301 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIST-------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTI 301 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhh-------------hhccCCceEEEEEcCCCCEEEeccCCccEE
Confidence 358999999 69999999999999999987655322 56899999999999655 99999999999
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+||..+++. .. .+..|..+...+.|-.+ ..+++++.
T Consensus 302 lwd~~~g~~----------------~q---------------------------~f~~~s~~~lDVdW~~~-~~F~ts~t 337 (524)
T KOG0273|consen 302 LWDAHTGTV----------------KQ---------------------------QFEFHSAPALDVDWQSN-DEFATSST 337 (524)
T ss_pred EEeccCceE----------------EE---------------------------eeeeccCCccceEEecC-ceEeecCC
Confidence 999988832 11 22246666677888754 45899999
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
|+.|+++.+...+++.++. +|.+.|.++.|+|.+ .+|++++.|++++||+..... ....+.+|...|..+
T Consensus 338 d~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~--------~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 338 DGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSN--------SVHDLQAHSKEIYTI 407 (524)
T ss_pred CceEEEEEecCCCcceeee-cccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCc--------chhhhhhhccceeeE
Confidence 9999999999999999999 799999999999854 499999999999999986555 788899999999999
Q ss_pred EEcCCC---------CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCC
Q 041325 311 ALSTDG---------TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDN 379 (450)
Q Consensus 311 ~~~~~~---------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 379 (450)
.|+|.| ..+++++.|++|++||+..+.++ ..+..|..+|.+++|+ +.++|+|+.||
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i-------------~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI-------------HTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee-------------EeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 999954 47999999999999999999876 6788999999999999 55999999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.|.+|+.+++ +.++.+.+ .+.|..|+|+.++. +|..+-.||.+++-|+|
T Consensus 475 ~V~iws~~~~--------~l~~s~~~-~~~Ifel~Wn~~G~-------------kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 475 CVHIWSTKTG--------KLVKSYQG-TGGIFELCWNAAGD-------------KLGACASDGSVCVLDLR 523 (524)
T ss_pred eeEeccccch--------heeEeecC-CCeEEEEEEcCCCC-------------EEEEEecCCCceEEEec
Confidence 9999999985 66666664 56699999999999 88888899999999986
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=265.66 Aligned_cols=292 Identities=17% Similarity=0.301 Sum_probs=243.0
Q ss_pred CCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecCCCceEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGNGDAVKSLV 134 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 134 (450)
+.-+.+.++++. ||+..|+++.| .+.+|++|+.|+.|+||++.. +.++.. +.+|..+|.+++
T Consensus 200 c~~Pkk~~~~~~--gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt------------f~gH~k~Vrd~~ 265 (503)
T KOG0282|consen 200 CYLPKKLSHNLS--GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT------------FKGHRKPVRDAS 265 (503)
T ss_pred eeccHhheeecc--CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh------------hhcchhhhhhhh
Confidence 334556777777 99999999999 699999999999999999877 666665 889999999999
Q ss_pred EeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 135 VLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 135 ~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
|+.++ +++++.|+.|++||++++++ +..+. -...
T Consensus 266 ~s~~g~~fLS~sfD~~lKlwDtETG~~----------------~~~f~----------------------------~~~~ 301 (503)
T KOG0282|consen 266 FNNCGTSFLSASFDRFLKLWDTETGQV----------------LSRFH----------------------------LDKV 301 (503)
T ss_pred ccccCCeeeeeecceeeeeeccccceE----------------EEEEe----------------------------cCCC
Confidence 99776 99999999999999999943 33332 2336
Q ss_pred eEEEEEccCC-CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 213 VSALALSSDG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 213 v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|..+.|.+. +..+++.+.|+.+++|+.+.+-
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v---- 375 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPV---- 375 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCc----
Confidence 8999999987 899999999999999999999999888 89999999999984 4489999999999999986654
Q ss_pred ccchhhh-hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc--eEEEEEe
Q 041325 292 KKHSLVQ-TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA--ILCLAVV 368 (450)
Q Consensus 292 ~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~ 368 (450)
.++ ....+.....++..+|+++++++-+.|+.|.++.+...- .+.....+.+|..+ -..+.|+
T Consensus 376 ----~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~----------r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 376 ----PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF----------RLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred ----cchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc----------ccCHhhhhcceeccCceeeEEEc
Confidence 222 222344567789999999999999999999999976422 12234567777644 3455666
Q ss_pred --CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 369 --SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 369 --~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
+.+|++|+.||.+.+||.++ .+.+..+++|.+++..+.|+|.... .+||+|.||.|++
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt--------~kl~~~lkah~~~ci~v~wHP~e~S------------kvat~~w~G~Iki 501 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKT--------TKLVSKLKAHDQPCIGVDWHPVEPS------------KVATCGWDGLIKI 501 (503)
T ss_pred CCCCeEEeecCCccEEEeechh--------hhhhhccccCCcceEEEEecCCCcc------------eeEecccCceeEe
Confidence 45999999999999999997 4788899999999999999998775 8999999999999
Q ss_pred EE
Q 041325 447 WQ 448 (450)
Q Consensus 447 w~ 448 (450)
|+
T Consensus 502 wd 503 (503)
T KOG0282|consen 502 WD 503 (503)
T ss_pred cC
Confidence 96
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=244.23 Aligned_cols=330 Identities=13% Similarity=0.170 Sum_probs=256.9
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.-+.+|. .|...|.+++. +.++++||+.|..-.+|+..++..... +.+|+..|+++.|+-++
T Consensus 55 dS~~tF~--~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e------------ltgHKDSVt~~~Fshdgtl 120 (399)
T KOG0296|consen 55 DSLVTFD--KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE------------LTGHKDSVTCCSFSHDGTL 120 (399)
T ss_pred cceeehh--hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE------------ecCCCCceEEEEEccCceE
Confidence 4566777 99999999999 689999999999999999999985555 78999999999999666
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCC-CcceeEeeecCceEEEeecc----eeeeecCCCceE
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTL-NDRFTKCFLANNYVQVRRHK----KCTWVHHVDTVS 214 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~ 214 (450)
|+||+.+|.|++|+..++.......... .-+..+.-. ...+..+...++.+=+++.+ ...+.+|..+++
T Consensus 121 LATGdmsG~v~v~~~stg~~~~~~~~e~------~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 121 LATGDMSGKVLVFKVSTGGEQWKLDQEV------EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT 194 (399)
T ss_pred EEecCCCccEEEEEcccCceEEEeeccc------CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc
Confidence 9999999999999999986543332110 111111111 23344444455555554433 356789999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+=.|.|+|+.++++..||+|++||+.+++++..+.........++.++. ....++.|..++.+++-+..+++.......
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCC
Confidence 9999999999999999999999999999999988755566677888775 334788899999998888777663221111
Q ss_pred hhhhhHhhcccc---eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-C
Q 041325 295 SLVQTLEKHKSA---VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-N 370 (450)
Q Consensus 295 ~~~~~~~~~~~~---i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 370 (450)
........+... |.++.++..-.+.|+|+.||+|.|||+...+. +..-.|...|+.+.|.+ .
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--------------R~~c~he~~V~~l~w~~t~ 339 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--------------RHICEHEDGVTKLKWLNTD 339 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--------------heeccCCCceEEEEEcCcc
Confidence 111111123333 44455555667899999999999999986542 34456888899999998 6
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|++++.+|.|+.||.++| +++..+.+|...|.+++++|+.+ +++|+|.|++.+||++
T Consensus 340 ~l~t~c~~g~v~~wDaRtG--------~l~~~y~GH~~~Il~f~ls~~~~-------------~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTG--------QLKFTYTGHQMGILDFALSPQKR-------------LVVTVSDDNTALVFEV 397 (399)
T ss_pred hheeeccCceEEeeecccc--------ceEEEEecCchheeEEEEcCCCc-------------EEEEecCCCeEEEEec
Confidence 9999999999999999986 88999999999999999999999 9999999999999986
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=272.68 Aligned_cols=291 Identities=28% Similarity=0.521 Sum_probs=240.6
Q ss_pred ccceeeeEEeecCC-CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCC--ceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 61 SEHQCSATLKVKGN-SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN--YVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 61 ~~~~~~~~l~~~~h-~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
..+...+.+. +| ...|+++.| ||+++++++.|+.+++|+..... .... +.+|...|.+++|
T Consensus 146 ~~~~~~~~~~--~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~------------l~~h~~~v~~~~f 211 (456)
T KOG0266|consen 146 RVFSLEQTLA--GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE------------LSGHTRGVSDVAF 211 (456)
T ss_pred ccceeeeeec--ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc------------ccccccceeeeEE
Confidence 3344455554 55 789999999 89999999999999999996665 2222 4689999999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+++. +++++.|++|++||+.... .....+.+|...|
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~~------------------------------------------~~~~~l~gH~~~v 249 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDDG------------------------------------------RNLKTLKGHSTYV 249 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCCC------------------------------------------eEEEEecCCCCce
Confidence 9887 9999999999999994331 1233455899999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
++++|+|+++++++|+.|++|+|||+++++++..+. .|.+.|.+++|.++ ..+|++++.|+.|++||+.++...
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~---- 323 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKL---- 323 (456)
T ss_pred EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCcee----
Confidence 999999999999999999999999999999999999 89999999999984 458999999999999999876511
Q ss_pred chhhhhHhhccc--ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE---EEe
Q 041325 294 HSLVQTLEKHKS--AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL---AVV 368 (450)
Q Consensus 294 ~~~~~~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~ 368 (450)
+...+..+.. .+++++|+|++.+|++++.|+.+++||+..++.. ....+|...+.|+ ...
T Consensus 324 --~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 324 --CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-------------GTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred --eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-------------eeecccCCcceeEeccccc
Confidence 2344444444 5999999999999999999999999999988755 4556666544333 212
Q ss_pred --CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEEEEcc--cCCc
Q 041325 369 --SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS--LDCE 443 (450)
Q Consensus 369 --~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~--~Dg~ 443 (450)
+.++++|+.|+.|++||+.++ ..+..+.+| ...+..+.+++... ++++++ .|+.
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~--------~~~~~l~~h~~~~~~~~~~~~~~~-------------~~~s~s~~~d~~ 447 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG--------GILQRLEGHSKAAVSDLSSHPTEN-------------LIASSSFEGDGL 447 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc--------chhhhhcCCCCCceeccccCCCcC-------------eeeecCcCCCce
Confidence 569999999999999999974 677888899 89999999999999 899998 7999
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
|++|..
T Consensus 448 ~~~w~~ 453 (456)
T KOG0266|consen 448 IRLWKY 453 (456)
T ss_pred EEEecC
Confidence 999974
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=239.33 Aligned_cols=280 Identities=21% Similarity=0.372 Sum_probs=233.9
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
.++-...|+|++.++.+++.+-.+ .++..-+....+.+. --..+|..++| +|+++|
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGkl--------------------IvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKL--------------------IVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVA 113 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeE--------------------EEEEcccccceeEEe--cCceeEEEEEECCCCCeEE
Confidence 367778888999888887665544 334444445666666 56789999999 899999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
.|+.|+...||++.+...... ....-.+.+|++.+.|+.|.+|. |++++.|.+..+||+++++
T Consensus 114 cGGLdN~Csiy~ls~~d~~g~------~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~---------- 177 (343)
T KOG0286|consen 114 CGGLDNKCSIYPLSTRDAEGN------VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ---------- 177 (343)
T ss_pred ecCcCceeEEEeccccccccc------ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce----------
Confidence 999999999999985521111 01112378999999999999887 9999999999999999983
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEE
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLES 247 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 247 (450)
....+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.+.
T Consensus 178 ---------------------------------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt 224 (343)
T KOG0286|consen 178 ---------------------------------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT 224 (343)
T ss_pred ---------------------------------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence 3345568999999999999 999999999999999999999999999
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
|. +|...|+++.|.|++. -+++|+.|+..++||++..+ .+..+ .....+|++++|+..|++|++|..|
T Consensus 225 F~-ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--------~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 225 FE-GHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--------ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred ec-ccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--------EEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 99 9999999999999544 79999999999999998865 22222 2345689999999999999999999
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEee
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd 385 (450)
..+.+||.-.++.+ ..+.+|...|.|+...++ -+++|+.|..+|||.
T Consensus 295 ~~c~vWDtlk~e~v-------------g~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 295 FTCNVWDTLKGERV-------------GVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEeeccccceE-------------EEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999888755 678899999999999866 899999999999994
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=288.45 Aligned_cols=299 Identities=15% Similarity=0.192 Sum_probs=228.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEeCCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg 147 (450)
+|...|++++| ++++||+|+.||.|+||+......... ........+ .+...|.+++|++. .|++++.||
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----ccccceEEe-cccCceeeEEeccCCCCEEEEEeCCC
Confidence 69999999999 799999999999999999764211000 000011122 33468999999853 499999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLY 226 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 226 (450)
+|++||+.+++ . ...+.+|.+.|++++|+| ++.+|+
T Consensus 556 ~v~lWd~~~~~----------------~---------------------------~~~~~~H~~~V~~l~~~p~~~~~L~ 592 (793)
T PLN00181 556 VVQVWDVARSQ----------------L---------------------------VTEMKEHEKRVWSIDYSSADPTLLA 592 (793)
T ss_pred eEEEEECCCCe----------------E---------------------------EEEecCCCCCEEEEEEcCCCCCEEE
Confidence 99999998762 1 123346999999999997 789999
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+|+.||.|++||+.++..+..+. +...+.++.|.+....++++|+.||.|++||++... .....+.+|...
T Consensus 593 Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-------~~~~~~~~h~~~ 663 (793)
T PLN00181 593 SGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-------LPLCTMIGHSKT 663 (793)
T ss_pred EEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------ccceEecCCCCC
Confidence 99999999999999998888886 346899999976566789999999999999997643 134455689999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIW 384 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw 384 (450)
|.++.|. ++.+|++++.|+.|++||++.+... ........+.+|...+.+++|+ +.+|++|+.|+.|++|
T Consensus 664 V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~-------~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG-------INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred EEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc-------cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEE
Confidence 9999997 7889999999999999999753200 0011335677899989888887 4599999999999999
Q ss_pred eCCCCccccC---CCceeE--EEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 385 RRSSSVTDHQ---KGYSCL--AVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 385 d~~~~~~~~~---~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+......... .....+ .....|...|.+++|++++. .|++|+.||.|+||+|
T Consensus 736 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~-------------~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 736 HKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS-------------TLVAANSTGNIKILEM 792 (793)
T ss_pred ECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC-------------eEEEecCCCcEEEEec
Confidence 9764311000 000000 11234667899999999999 9999999999999997
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=248.77 Aligned_cols=257 Identities=23% Similarity=0.429 Sum_probs=228.6
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCC-CceeeeecCCCCcceeEEecCC
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN-NYVNITSTDVGDHANVVATGNG 127 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~h~ 127 (450)
.......+...++++.+.|+ ||.+.|..++| .|++||+++.|=.+.+||.++. ++.+. +.+|.
T Consensus 128 ~d~tikv~D~~tg~~e~~Lr--GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks------------~~gh~ 193 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLR--GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS------------LIGHE 193 (406)
T ss_pred CCceEEEEEccchhhhhhhh--ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH------------hcCcc
Confidence 45667778888999999999 99999999999 5999999999999999998763 33332 56899
Q ss_pred CceEEEEEeCC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
..|.+++|-|. .+++++.|.+|+.|++.++ .++.+++
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----------------~cv~t~~------------------------- 232 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----------------YCVKTFP------------------------- 232 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccc----------------eeEEecc-------------------------
Confidence 99999999854 4999999999999999999 5555555
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC--------------CcEEEE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN--------------DGFVYT 271 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~l~~ 271 (450)
+|...|..+..+.||.++++++.|.+|++|-+.++++...++ .|+.+|.+++|.|.. ..++.+
T Consensus 233 --~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 233 --GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred --CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 688899999999999999999999999999999998888888 899999999998732 137999
Q ss_pred EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceee
Q 041325 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVL 351 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 351 (450)
++.|++|++||+.++. ++.++.+|.+.|..++|+|.|+||+++.+|+++++||++++++.
T Consensus 310 ~SrDktIk~wdv~tg~--------cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm------------ 369 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGM--------CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM------------ 369 (406)
T ss_pred ecccceEEEEeccCCe--------EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee------------
Confidence 9999999999998887 88999999999999999999999999999999999999998866
Q ss_pred eccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeC
Q 041325 352 KGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~ 386 (450)
..+..|..-++++.|..+ ++++|+-|..+++|.-
T Consensus 370 -k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 370 -KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -eccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 677789999999999854 9999999999999963
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=259.07 Aligned_cols=280 Identities=23% Similarity=0.386 Sum_probs=242.8
Q ss_pred eEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEE
Q 041325 67 ATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFS 142 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s 142 (450)
+++. .|...|.++.+ ...+++++-.+|.|.|||.++...+.. +.-..-+|.+..|-+.. +++
T Consensus 7 rk~~--~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks------------feV~~~PvRa~kfiaRknWiv~ 72 (794)
T KOG0276|consen 7 RKFQ--SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS------------FEVSEVPVRAAKFIARKNWIVT 72 (794)
T ss_pred hHhh--ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee------------eeecccchhhheeeeccceEEE
Confidence 3445 78999999999 689999999999999999999988877 44556789999998655 999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
|+.|..|++|+.++. + +...+..|.+.|++++.+|..
T Consensus 73 GsDD~~IrVfnynt~----------------e---------------------------kV~~FeAH~DyIR~iavHPt~ 109 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTG----------------E---------------------------KVKTFEAHSDYIRSIAVHPTL 109 (794)
T ss_pred ecCCceEEEEecccc----------------e---------------------------eeEEeeccccceeeeeecCCC
Confidence 999999999999998 2 333455799999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 223 SLLYSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
.+++++++|-+|++||.+.. .+.+.+. +|...|++++|+|.+.+.+++++-|++|++|.+.... +..+++
T Consensus 110 P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--------~nfTl~ 180 (794)
T KOG0276|consen 110 PYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--------PNFTLE 180 (794)
T ss_pred CeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--------Cceeee
Confidence 99999999999999999875 4556666 9999999999999999999999999999999996655 788899
Q ss_pred hcccceEEEEEcCCC--CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeC
Q 041325 302 KHKSAVTALALSTDG--TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSS 377 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~ 377 (450)
+|...|+++.|-+.| .+|++|+.|..|+|||..+..|+ +++.+|...|.++.|++. .+++|+.
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV-------------~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV-------------QTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH-------------HHhhcccccceEEEecCCCcEEEEecC
Confidence 999999999998744 69999999999999999998866 899999999999999987 8999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
||++|||+..+ ++....+.-.-..|++++-.+.+. .++.|.++|.|.+
T Consensus 248 DGTvriWhs~T--------y~lE~tLn~gleRvW~I~~~k~~~-------------~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 248 DGTVRIWNSKT--------YKLEKTLNYGLERVWCIAAHKGDG-------------KIAVGFDEGSVTV 295 (794)
T ss_pred CccEEEecCcc--------eehhhhhhcCCceEEEEeecCCCC-------------eEEEeccCCcEEE
Confidence 99999999776 455555655667899999888877 7888887777653
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=253.27 Aligned_cols=239 Identities=23% Similarity=0.404 Sum_probs=209.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
+|..+|+++.| +|.++++|+.+|.|++|+..-...... ...|...|++++|+|+. +++++.||+
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~------------~ahh~eaIRdlafSpnDskF~t~SdDg~ 203 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII------------QAHHAEAIRDLAFSPNDSKFLTCSDDGT 203 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh------------hHhhhhhhheeccCCCCceeEEecCCCe
Confidence 99999999999 899999999999999998765443322 23555899999999766 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|+|||....+ +...+.+|.-.|.+++|+|...++++|
T Consensus 204 ikiWdf~~~k-------------------------------------------ee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 204 IKIWDFRMPK-------------------------------------------EERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred EEEEeccCCc-------------------------------------------hhheeccCCCCcceeccCCccceeEEc
Confidence 9999998762 333456899999999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
++|..|++||.+++.++.++. .|+..|..+.|++.. ++|++++.|..++++|+++.+ .+..+++|+..++
T Consensus 241 skDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk--------El~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK--------ELFTYRGHKKDVT 310 (464)
T ss_pred cCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH--------HHHHhhcchhhhe
Confidence 999999999999999999998 899999999999965 799999999999999998655 7889999999999
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEee
Q 041325 309 ALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 309 ~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 385 (450)
+++|+| ...+|.+|+.||.|..|.+...+++ ...-.+|...|++++|+ |.+|++|+.|.++++|.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~------------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL------------GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccc------------cCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999 6678999999999999999844433 23456799999999999 67999999999999997
Q ss_pred CCC
Q 041325 386 RSS 388 (450)
Q Consensus 386 ~~~ 388 (450)
...
T Consensus 379 r~r 381 (464)
T KOG0284|consen 379 RNR 381 (464)
T ss_pred cCC
Confidence 553
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=244.98 Aligned_cols=242 Identities=24% Similarity=0.429 Sum_probs=216.9
Q ss_pred eeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
..++.+|.+.|.|+++.|.. +++|+.|++|+|||+.+++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--------------------------------------- 184 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--------------------------------------- 184 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe---------------------------------------
Confidence 34578999999999999766 9999999999999999983
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
....+.+|...|..+++++...|+++++.|+.|+.||++..+.++.+. +|.+.|.+++.+|..+ .|++|+.|..
T Consensus 185 ----LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTld-vl~t~grDst 258 (460)
T KOG0285|consen 185 ----LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLD-VLVTGGRDST 258 (460)
T ss_pred ----EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccce-eEEecCCcce
Confidence 233455899999999999999999999999999999999999999988 9999999999999555 8999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+++||+++.. .+..+.+|..+|.++.+.|-...+++|+.|++|++||++.++.. ..+..
T Consensus 259 ~RvWDiRtr~--------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-------------~tlt~ 317 (460)
T KOG0285|consen 259 IRVWDIRTRA--------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-------------ITLTH 317 (460)
T ss_pred EEEeeecccc--------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-------------Eeeec
Confidence 9999998877 78899999999999999997888999999999999999998754 57788
Q ss_pred CccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 358 HTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 358 ~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
|...|.+++.+++ .+++++.|. |+-|++..+ ..+..+.+|...|++++...|+ ++
T Consensus 318 hkksvral~lhP~e~~fASas~dn-ik~w~~p~g--------~f~~nlsgh~~iintl~~nsD~--------------v~ 374 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPDN-IKQWKLPEG--------EFLQNLSGHNAIINTLSVNSDG--------------VL 374 (460)
T ss_pred ccceeeEEecCCchhhhhccCCcc-ceeccCCcc--------chhhccccccceeeeeeeccCc--------------eE
Confidence 9999999999976 777777775 999999875 6677799999999999998887 69
Q ss_pred EEcccCCcEEEEEeC
Q 041325 436 YSGSLDCEIKIWQIR 450 (450)
Q Consensus 436 ~s~~~Dg~i~iw~l~ 450 (450)
++|++.|.+.+||-|
T Consensus 375 ~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWK 389 (460)
T ss_pred EEcCCceEEEEEecC
Confidence 999999999999964
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=264.79 Aligned_cols=287 Identities=19% Similarity=0.358 Sum_probs=245.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
..+..|..++| ...+++++-..|.|++||.+-+.++.. +..|.++|..++|+|.. +++||.|-.
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r------------FdeHdGpVRgv~FH~~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR------------FDEHDGPVRGVDFHPTQPLFVSGGDDYK 74 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh------------hhccCCccceeeecCCCCeEEecCCccE
Confidence 56778999999 688999999999999999998887766 77999999999999888 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++|+..+. .++.+ +.+|-+.|+.+.|++.-.+++++
T Consensus 75 IkVWnYk~r----------------rclft---------------------------L~GHlDYVRt~~FHheyPWIlSA 111 (1202)
T KOG0292|consen 75 IKVWNYKTR----------------RCLFT---------------------------LLGHLDYVRTVFFHHEYPWILSA 111 (1202)
T ss_pred EEEEecccc----------------eehhh---------------------------hccccceeEEeeccCCCceEEEc
Confidence 999999988 34433 44899999999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc-----------------
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN----------------- 291 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------- 291 (450)
++|.+|+||+..+++++..+. +|...|+|..|+|..+ ++++++-|.+||+||+..-+....
T Consensus 112 SDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d 189 (1202)
T KOG0292|consen 112 SDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD 189 (1202)
T ss_pred cCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence 999999999999999999999 9999999999999655 999999999999999854221100
Q ss_pred ----ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 292 ----KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 292 ----~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
........+++|...|+-++|+|.-.+|++|+.|..|++|.+...+.- ......+|.+.|.++-|
T Consensus 190 Lfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-----------EvDtcrgH~nnVssvlf 258 (1202)
T KOG0292|consen 190 LFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-----------EVDTCRGHYNNVSSVLF 258 (1202)
T ss_pred hcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-----------eehhhhcccCCcceEEe
Confidence 011223456789999999999999999999999999999999865422 44678899999999999
Q ss_pred eC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 368 VS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 368 ~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++ +++++.|.|++|+|||+.. ...+..+....+.-+.++.+|..+ |+.++.|+-+.
T Consensus 259 hp~q~lIlSnsEDksirVwDm~k--------Rt~v~tfrrendRFW~laahP~lN--------------LfAAgHDsGm~ 316 (1202)
T KOG0292|consen 259 HPHQDLILSNSEDKSIRVWDMTK--------RTSVQTFRRENDRFWILAAHPELN--------------LFAAGHDSGMI 316 (1202)
T ss_pred cCccceeEecCCCccEEEEeccc--------ccceeeeeccCCeEEEEEecCCcc--------------eeeeecCCceE
Confidence 98 6999999999999999986 367888877788899999999998 44455666677
Q ss_pred EEEe
Q 041325 446 IWQI 449 (450)
Q Consensus 446 iw~l 449 (450)
+|.+
T Consensus 317 VFkl 320 (1202)
T KOG0292|consen 317 VFKL 320 (1202)
T ss_pred EEEE
Confidence 7776
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=232.61 Aligned_cols=278 Identities=22% Similarity=0.392 Sum_probs=231.2
Q ss_pred EeecCCCcceEEEEE-----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE
Q 041325 69 LKVKGNSSYIPSLAI-----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF 141 (450)
Q Consensus 69 l~~~~h~~~v~~~~~-----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~ 141 (450)
+..+||..+|..++| +|-+|++++.||.-.+-+-+++.-+-. +.+|.+.|++...+.+. -+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt------------feghkgavw~~~l~~na~~aa 75 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT------------FEGHKGAVWSATLNKNATRAA 75 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe------------eeccCcceeeeecCchhhhhh
Confidence 445699999999999 689999999999999988888887766 88999999999998766 78
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.|=+-++||.-++. .+..+ .|..-|.+++|+.|
T Consensus 76 saaadftakvw~a~tgd----------------elhsf----------------------------~hkhivk~~af~~d 111 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGD----------------ELHSF----------------------------EHKHIVKAVAFSQD 111 (334)
T ss_pred hhcccchhhhhhhhhhh----------------hhhhh----------------------------hhhheeeeEEeccc
Confidence 88999999999998882 22222 48889999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCe-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
.++|++|+.+..+|+||++..+ +...+. +|.+.|..+.|.. .++.+++.+.|+.||+||.+++. .++.+
T Consensus 112 s~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt--------~v~sL 181 (334)
T KOG0278|consen 112 SNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGT--------EVQSL 181 (334)
T ss_pred chhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEec-cCceEEeeccCCceEEEEeccCc--------EEEEE
Confidence 9999999999999999998765 344555 8999999999997 55578888999999999998887 55555
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
. .+..|+++.++++|++|.++ ..+.|..||..+-..+. .. .-...|.+.+..|+ .+++|+.|
T Consensus 182 ~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lK-------------s~-k~P~nV~SASL~P~k~~fVaGged 245 (334)
T KOG0278|consen 182 E-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLK-------------SY-KMPCNVESASLHPKKEFFVAGGED 245 (334)
T ss_pred e-cCCCCcceeeccCCCEEEEe-cCceeEEecccccccee-------------ec-cCccccccccccCCCceEEecCcc
Confidence 4 56889999999999877665 46789999999765542 11 12344566666654 89999999
Q ss_pred CeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..++.||+.++ ..+.. .++|.++|.|+.|+|+|. ..++||.||+|+||.+
T Consensus 246 ~~~~kfDy~Tg--------eEi~~~nkgh~gpVhcVrFSPdGE-------------~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 246 FKVYKFDYNTG--------EEIGSYNKGHFGPVHCVRFSPDGE-------------LYASGSEDGTIRLWQT 296 (334)
T ss_pred eEEEEEeccCC--------ceeeecccCCCCceEEEEECCCCc-------------eeeccCCCceEEEEEe
Confidence 99999999986 33444 489999999999999999 9999999999999986
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=257.95 Aligned_cols=326 Identities=20% Similarity=0.357 Sum_probs=260.2
Q ss_pred CcccCCCccCCCCCcc--ccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE-eCCE
Q 041325 11 CRRNKEPKFQPSSNHL--QSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI-AGKL 87 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~ 87 (450)
.+|++++.+-|.+... ....+++++.. +..+. + ....+....+..+.+.||...|+++++ +.+.
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~----ysl~~---s------~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~ 386 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEW----YSLEN---S------GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI 386 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEE----EEecc---C------CCCCccccccceeeeccchhheeEEEeecCce
Confidence 4589999998887665 22456666543 11111 0 011134456677888899999999999 4444
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
++..+..+.+++|+..+.+++.. -..+.+.+..|.|.. +++|...|.+.++|+.+..
T Consensus 387 ~~~Sga~~SikiWn~~t~kciRT--------------i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~------- 445 (888)
T KOG0306|consen 387 LLASGAGESIKIWNRDTLKCIRT--------------ITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS------- 445 (888)
T ss_pred eeeecCCCcEEEEEccCcceeEE--------------eccccEEEEEecCCCceEEEeccCCceEEEEeehhh-------
Confidence 44444458999999999998776 122377888887655 9999999999999998772
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC----
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD---- 241 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---- 241 (450)
.+.+ ...|.+.+.+++.+||+..+++|+.|.+|++||..-
T Consensus 446 ---------l~Et---------------------------i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 446 ---------LVET---------------------------IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred ---------hhhh---------------------------hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 2222 236999999999999999999999999999999742
Q ss_pred -CeE--EEEee----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 242 -FRC--LESVK----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 242 -~~~--~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
+.. ...+. ......|.|+.++|++ .+|+++--|.+|++|-+++-+ ..-.+.+|.-+|.||..+|
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlK--------FflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLK--------FFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEeccee--------eeeeecccccceeEEeccC
Confidence 111 11111 1346789999999954 499999999999999987665 6677889999999999999
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccc
Q 041325 315 DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTD 392 (450)
Q Consensus 315 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 392 (450)
|++++++|+.|.+|+||-+.-|.|- ..+.+|...|+++.|.|+ ++++++.|+.|+-||-..
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCH-------------KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---- 623 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCH-------------KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---- 623 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhh-------------hhhhcccCceeEEEEcccceeEEEecCcceEEeechhh----
Confidence 9999999999999999999988755 788899999999999976 899999999999999765
Q ss_pred cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 393 HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++++..+.+|...|++++.+|+|. +++++|.|.+|++|+.
T Consensus 624 ----Fe~iq~L~~H~~ev~cLav~~~G~-------------~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 624 ----FEEIQKLDGHHSEVWCLAVSPNGS-------------FVVSSSHDKSIRLWER 663 (888)
T ss_pred ----hhhheeeccchheeeeeEEcCCCC-------------eEEeccCCceeEeeec
Confidence 688999999999999999999999 9999999999999974
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=263.02 Aligned_cols=273 Identities=28% Similarity=0.504 Sum_probs=241.6
Q ss_pred CCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCeEEEEeCCCeEE
Q 041325 73 GNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLFSAHQDHKIR 150 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~ 150 (450)
.|...+.+..+.+.++++++.|++|++|+..++..+.. .+.||.+.|+++++. .+.+++|+.|.+++
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~-----------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILT-----------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTER 274 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccceEEEe-----------eccCCCCCceeEEEecCCCEEEEEecCCcEE
Confidence 36678999999999999999999999999988876554 367999999999999 77799999999999
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+||..++ .|... +.+|.+.|.++... ...+++|+.
T Consensus 275 vWd~~sg----------------~C~~~---------------------------l~gh~stv~~~~~~--~~~~~sgs~ 309 (537)
T KOG0274|consen 275 VWDCSTG----------------ECTHS---------------------------LQGHTSSVRCLTID--PFLLVSGSR 309 (537)
T ss_pred eEecCCC----------------cEEEE---------------------------ecCCCceEEEEEcc--CceEeeccC
Confidence 9999998 33333 34799999998876 456888999
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
|.+|++|++.++.++..+. +|..+|.++..+ ..++++|+.|+.|++||+.+++ ++..+.+|...|.++
T Consensus 310 D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~--------cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGK--------CLKSLSGHTGRVYSL 377 (537)
T ss_pred CceEEEEeccCcceEEEec-cccccEEEEEec---CCEEEEEecCceEEEEEhhhce--------eeeeecCCcceEEEE
Confidence 9999999999999999998 699999999997 5599999999999999998777 899999999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCC-ceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQG-NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
.+... +.+++|+.|+.|++||+++. +++ ..+.+|...+..+.+.+++|++++.|++|++||.+++
T Consensus 378 ~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~-------------~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 378 IVDSE-NRLLSGSLDTTIKVWDLRTKRKCI-------------HTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EecCc-ceEEeeeeccceEeecCCchhhhh-------------hhhcCCcccccccccccceeEeccccccEEEeecccC
Confidence 88654 89999999999999999988 654 7889999999999999999999999999999999875
Q ss_pred ccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 390 VTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 390 ~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++..+.+ |...|..+++. .. .+++++.||.+++||++
T Consensus 444 --------~~~~~~~~~~~~~v~~l~~~--~~-------------~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 444 --------ECLRTLEGRHVGGVSALALG--KE-------------EILCSSDDGSVKLWDLR 482 (537)
T ss_pred --------ceeeeeccCCcccEEEeecC--cc-------------eEEEEecCCeeEEEecc
Confidence 78888888 67889888876 33 79999999999999985
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=250.25 Aligned_cols=344 Identities=24% Similarity=0.401 Sum_probs=254.3
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
.++++.......-++. ||..+|+++.| .|..|++||.|+.|.+||+-...-... +.||.+.|+.
T Consensus 89 Vqif~~~s~~~~~tfn--gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r------------L~GHkd~iT~ 154 (888)
T KOG0306|consen 89 VQIFSLESEEILITFN--GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR------------LRGHKDSITQ 154 (888)
T ss_pred EEeeccCCCceeeeec--ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE------------eecchHHHhH
Confidence 3444444445666777 99999999999 599999999999999999876654443 7899999999
Q ss_pred EEEeC-Ce-EEEEeCCCeEEEEEcCCCceeEEeccCcc------------------cc-cce------------------
Q 041325 133 LVVLG-DK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKL------------------KN-KYY------------------ 173 (450)
Q Consensus 133 l~~~~-~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~~-~~~------------------ 173 (450)
.-|.. +. +++.+.|+.|++||+++..+........- .. ..+
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~ 234 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTK 234 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceee
Confidence 99986 44 99999999999999998755322111110 00 000
Q ss_pred -----------eeeeeccCCCcceeEeeecC-------------------------------------------------
Q 041325 174 -----------ERIATLPTLNDRFTKCFLAN------------------------------------------------- 193 (450)
Q Consensus 174 -----------~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 193 (450)
..+.......+++..+-..+
T Consensus 235 ~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~ 314 (888)
T KOG0306|consen 235 LRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRL 314 (888)
T ss_pred ccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHH
Confidence 01111111122222221111
Q ss_pred -----------------------------ceEEEeec-------------ceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 194 -----------------------------NYVQVRRH-------------KKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 194 -----------------------------~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
+.+..... ....+.+|...|.+++++.+...+++|+ .
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~ 393 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-G 393 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-C
Confidence 11111000 0133568999999999999888777776 6
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
+.|++|+..+.++++++. .+.+.+..|.| ++.++++|...|.+.+||+.... ++....+|.+.|++++
T Consensus 394 ~SikiWn~~t~kciRTi~---~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~--------l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTIT---CGYILASKFVP-GDRYIVLGTKNGELQVFDLASAS--------LVETIRAHDGAIWSIS 461 (888)
T ss_pred CcEEEEEccCcceeEEec---cccEEEEEecC-CCceEEEeccCCceEEEEeehhh--------hhhhhhccccceeeee
Confidence 799999999999999997 34888999998 67799999999999999997666 7888889999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc-eeee-ccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 312 LSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH-MVLK-GALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 312 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
.+||++.+++|+.|.+|++||+.--. ........ ..+. ...-.-...|.|++++|+ +|+.+--|++|+||-+.
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~---~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVV---SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEe---ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 99999999999999999999986211 10000000 0000 011123567899999954 99999999999999998
Q ss_pred CCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+ .+..-.+.||.-||.|+..+||++ +++|||.|..|++|-+
T Consensus 539 t--------lKFflsLYGHkLPV~smDIS~DSk-------------livTgSADKnVKiWGL 579 (888)
T KOG0306|consen 539 T--------LKFFLSLYGHKLPVLSMDISPDSK-------------LIVTGSADKNVKIWGL 579 (888)
T ss_pred c--------eeeeeeecccccceeEEeccCCcC-------------eEEeccCCCceEEecc
Confidence 7 578889999999999999999999 9999999999999976
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=235.66 Aligned_cols=348 Identities=20% Similarity=0.254 Sum_probs=249.7
Q ss_pred cccCCCCCccceeeeEEe-ecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCC-------------
Q 041325 53 FRKQAPAASEHQCSATLK-VKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVG------------- 116 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~-~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~------------- 116 (450)
...-++.-.+++.+..|. -.+|.+.|.+++| |+..++|++.|.+++|||+.+.+++........
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence 445567777888888776 4589999999999 899999999999999999998776554322111
Q ss_pred ------------------CcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeee
Q 041325 117 ------------------DHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERI 176 (450)
Q Consensus 117 ------------------~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 176 (450)
......+.||...|+++..+++. |++|+.||.|.-|+..++.......... ...+
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h-----~nqI 366 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH-----TNQI 366 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc-----cceE
Confidence 11344577999999999999877 9999999999999999885533221111 1222
Q ss_pred eeccCCCcceeEeeecCceEEEeecceeeee-----cCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 177 ATLPTLNDRFTKCFLANNYVQVRRHKKCTWV-----HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
..+...+........-+..+.........+. .-.....+++..+++.+++..+.++.+.+=|.. .+..+.
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~---~~~~~~-- 441 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT---KVSSIP-- 441 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC---cceeec--
Confidence 3333333222222222222222211111111 111223477888887777777755555444433 222222
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
-.-...+++++|+ ...+++|+.||.|++|.+..... ........|.++|++++|+||+.+|++|...+.+.+|
T Consensus 442 ~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 442 IGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDEL------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred cccccceEEEcCC-CCEEEEecccceEEEEEecCCcc------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 3456788999984 44899999999999999876541 1233455699999999999999999999999999999
Q ss_pred EcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc
Q 041325 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP 409 (450)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 409 (450)
|+.+.+.. ...+.-|...|.|++|+++ ++|||+.|-.|.||+++.+ .+.+....+|...
T Consensus 515 d~~s~~~~------------~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP-------~~~i~iknAH~~g 575 (603)
T KOG0318|consen 515 DVASREVK------------TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP-------AKHIIIKNAHLGG 575 (603)
T ss_pred EcccCcee------------cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh-------hhheEeccccccC
Confidence 99986532 2456679999999999976 9999999999999999864 3446667889999
Q ss_pred eEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 410 VKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 410 v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+.+.|..+.. +++.|.|..|++|.+.
T Consensus 576 Vn~v~wlde~t--------------vvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 576 VNSVAWLDEST--------------VVSSGQDANIKVWNVT 602 (603)
T ss_pred ceeEEEecCce--------------EEeccCcceeEEeccc
Confidence 99999987765 9999999999999873
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=223.35 Aligned_cols=263 Identities=19% Similarity=0.294 Sum_probs=220.4
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccc
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.+.|-++...+-+... ....-.+.+..++|+++. +++++.||++++||.....
T Consensus 37 ~G~L~ile~~~~~gi~e~----------~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------------ 94 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQEC----------QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS------------ 94 (311)
T ss_pred CceEEEEecCCCCCeEEE----------EeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC------------
Confidence 588999988644322221 122345689999999655 9999999999999965431
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEee
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (450)
.+...+++|..+|.++.|++ ++..+++++.|++|++|+...++.+.++.
T Consensus 95 ------------------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~ 144 (311)
T KOG0277|consen 95 ------------------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN 144 (311)
T ss_pred ------------------------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec
Confidence 24445668999999999999 67788899999999999999999999998
Q ss_pred cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcE
Q 041325 250 NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSI 328 (450)
Q Consensus 250 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i 328 (450)
+|...|....|+|...+++++++.|+.+++||++... ....+..|...|.++.|+. +.+.+++|+.|+.|
T Consensus 145 -gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--------k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 145 -GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--------KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred -CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--------ceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence 8999999999999999999999999999999997654 2333778999999999998 67789999999999
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
++||+++.+ .+...+.+|.-.|..+.|++. .|++++.|-++||||...+ ..++.+...
T Consensus 216 r~wDir~~r------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-------ds~~e~~~~ 276 (311)
T KOG0277|consen 216 RGWDIRNLR------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-------DSAIETVDH 276 (311)
T ss_pred EEEehhhcc------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc-------hhhhhhhhc
Confidence 999999764 245678999999999999965 9999999999999998853 356667778
Q ss_pred CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 406 HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 406 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
|+.-|..+.|++.... ++|+++-|+.++||+
T Consensus 277 HtEFv~g~Dws~~~~~------------~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 277 HTEFVCGLDWSLFDPG------------QVASTGWDELLYVWN 307 (311)
T ss_pred cceEEeccccccccCc------------eeeecccccceeeec
Confidence 9999999999987554 899999999999997
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=219.88 Aligned_cols=277 Identities=18% Similarity=0.272 Sum_probs=230.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC---CeEEEEeCCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG---DKLFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg 147 (450)
+|...|.+++| +|..|++|+.|+++.+|+++....... ....+|.+.|-.++|.+ +.+++++.|+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~----------~~~~gh~~svdql~w~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE----------LVYRGHTDSVDQLCWDPKHPDLFATASGDK 87 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh----------hcccCCCcchhhheeCCCCCcceEEecCCc
Confidence 99999999999 899999999999999999987753332 23569999999999984 4599999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 227 (450)
+|++||++..+ +..... ..+.-.-+.|+|+|.+++.
T Consensus 88 ~ir~wd~r~~k----------------~~~~i~----------------------------~~~eni~i~wsp~g~~~~~ 123 (313)
T KOG1407|consen 88 TIRIWDIRSGK----------------CTARIE----------------------------TKGENINITWSPDGEYIAV 123 (313)
T ss_pred eEEEEEeccCc----------------EEEEee----------------------------ccCcceEEEEcCCCCEEEE
Confidence 99999999984 333322 2223345789999999999
Q ss_pred EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 228 TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
++.|..|.+.|.++.+.....+ ....++.+.|+. .+.+++.....|.|.|.....- ++++.++.|....
T Consensus 124 ~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsL--------kpv~si~AH~snC 192 (313)
T KOG1407|consen 124 GNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSL--------KPVQSIKAHPSNC 192 (313)
T ss_pred ecCcccEEEEEecccceeehhc--ccceeeeeeecC-CCCEEEEecCCceEEEEecccc--------ccccccccCCcce
Confidence 9999999999999988887775 667889999995 4446666677799999987544 4899999999999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEee
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 385 (450)
.||.|+|+|++||+|+.|-.+.+||+...- ..+.+..+.-+|..++|+ +++||+||.|..|-|=+
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELi-------------C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELI-------------CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhh-------------hheeeccccCceEEEEeccCcceeeccCccceEEeEe
Confidence 999999999999999999999999998644 446778889999999997 67999999999999999
Q ss_pred CCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC---------CcEEEEEe
Q 041325 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD---------CEIKIWQI 449 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D---------g~i~iw~l 449 (450)
+++| ..+..++ +.++...|+|+|... +||-+++| |.|++|-+
T Consensus 260 vetG--------d~~~eI~-~~~~t~tVAWHPk~~-------------LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 260 VETG--------DRVWEIP-CEGPTFTVAWHPKRP-------------LLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred cccC--------CeEEEee-ccCCceeEEecCCCc-------------eeeEEecCCCCccccccceeEEecC
Confidence 9986 4455554 788999999999998 88877754 56777643
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=255.76 Aligned_cols=256 Identities=20% Similarity=0.346 Sum_probs=218.6
Q ss_pred ccCCcccCCcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEE
Q 041325 3 LLLPFPMPCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLA 82 (450)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~ 82 (450)
||+-|-.-.+|+|+++|.|..+-+....++.++ |.+..+.+.++..|. +|.++|+.+.
T Consensus 1 mltkfEskSsRvKglsFHP~rPwILtslHsG~I--------------------QlWDYRM~tli~rFd--eHdGpVRgv~ 58 (1202)
T KOG0292|consen 1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVI--------------------QLWDYRMGTLIDRFD--EHDGPVRGVD 58 (1202)
T ss_pred CcchhhcccccccceecCCCCCEEEEeecCcee--------------------eeehhhhhhHHhhhh--ccCCccceee
Confidence 455566667799999999999988887666555 667778889999999 9999999999
Q ss_pred E--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCc
Q 041325 83 I--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNT 158 (450)
Q Consensus 83 ~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~ 158 (450)
| .+.++++|++|-.|+||+....+++.. +.||-+-|..+.|++.+ +++++.|.+|+||++.+.
T Consensus 59 FH~~qplFVSGGDDykIkVWnYk~rrclft------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr- 125 (1202)
T KOG0292|consen 59 FHPTQPLFVSGGDDYKIKVWNYKTRRCLFT------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR- 125 (1202)
T ss_pred ecCCCCeEEecCCccEEEEEecccceehhh------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-
Confidence 9 799999999999999999999988776 88999999999999988 999999999999999998
Q ss_pred eeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 041325 159 SAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWR 238 (450)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 238 (450)
.++.. +.+|...|.|..|+|..+++++++.|.+||+||
T Consensus 126 ---------------~~iav---------------------------ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 126 ---------------KCIAV---------------------------LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred ---------------ceEEE---------------------------EecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 44444 448999999999999999999999999999999
Q ss_pred cCCC----------------------------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 239 TSDF----------------------------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 239 ~~~~----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
+... ..++.+..+|...|+-++|+|.-. ++++|+.|..|++|.+...+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetK--- 239 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETK--- 239 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEecccc---
Confidence 8531 122233358999999999998555 99999999999999986543
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDG 342 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 342 (450)
.+ .+.+..+|.+.|.++-|+|..+++++.++|+.|+|||+...+.+..+
T Consensus 240 --aW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 240 --AW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred --ce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 11 35677899999999999999999999999999999999987766433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=245.80 Aligned_cols=257 Identities=20% Similarity=0.318 Sum_probs=222.0
Q ss_pred CCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEec
Q 041325 48 APSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATG 125 (450)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (450)
+...+...+++...+..+++.+. -...+|++..| -.+++++|++|+.|||++.++++.+.. +..
T Consensus 30 a~LynG~V~IWnyetqtmVksfe--V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~------------FeA 95 (794)
T KOG0276|consen 30 AALYNGDVQIWNYETQTMVKSFE--VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT------------FEA 95 (794)
T ss_pred EeeecCeeEEEecccceeeeeee--ecccchhhheeeeccceEEEecCCceEEEEecccceeeEE------------eec
Confidence 33345566788888889999999 78899999999 689999999999999999999997776 889
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
|.+-|.+++.+|.. +++++.|-+|++||.+.+- ...
T Consensus 96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w------------------------------------------a~~ 133 (794)
T KOG0276|consen 96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW------------------------------------------ACE 133 (794)
T ss_pred cccceeeeeecCCCCeEEecCCccEEEEeeccCce------------------------------------------eee
Confidence 99999999999988 9999999999999999872 233
Q ss_pred eeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-EEEEEcCCCcEEEE
Q 041325 204 CTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVW 281 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw 281 (450)
..+.+|+..|.+++|+| |.+.+++++.|++|++|.+.+..+..++. +|...|+++.+.+.++. +|++|+.|..|++|
T Consensus 134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 45668999999999999 78899999999999999999999999999 99999999999864433 89999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|..+.. +++++.+|...|..+.|+|.-.++++|++||+++||+..+-+. ...+.-.-..
T Consensus 213 DyQtk~--------CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l-------------E~tLn~gleR 271 (794)
T KOG0276|consen 213 DYQTKS--------CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL-------------EKTLNYGLER 271 (794)
T ss_pred ecchHH--------HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh-------------hhhhhcCCce
Confidence 998777 8999999999999999999999999999999999999887543 2445555667
Q ss_pred eEEEEEe--CCeEEEEeCCCeEE
Q 041325 362 ILCLAVV--SNLLFSGSSDNTIR 382 (450)
Q Consensus 362 v~~~~~~--~~~l~s~~~dg~v~ 382 (450)
++|++.. .+.++.|..+|.|.
T Consensus 272 vW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 272 VWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEEEeecCCCCeEEEeccCCcEE
Confidence 8888865 34677777766654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=218.82 Aligned_cols=287 Identities=15% Similarity=0.245 Sum_probs=224.0
Q ss_pred ecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 71 VKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 71 ~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
+.||..+++.+.+ +|.+|++++.|.+..||-..+++.+-. +.||.+.|+++...-+. +++|+.|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt------------y~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT------------YDGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee------------ecCCCceEEEEEecCCcceeeecccc
Confidence 4499999999999 799999999999999999888886666 88999999999987544 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
.++++||+++++ .+...+ ...+|..+.|+++|++++
T Consensus 74 ~t~kLWDv~tGk----------------~la~~k----------------------------~~~~Vk~~~F~~~gn~~l 109 (327)
T KOG0643|consen 74 QTAKLWDVETGK----------------QLATWK----------------------------TNSPVKRVDFSFGGNLIL 109 (327)
T ss_pred ceeEEEEcCCCc----------------EEEEee----------------------------cCCeeEEEeeccCCcEEE
Confidence 999999999994 333333 344899999999999888
Q ss_pred EEeC-----CCcEEEEecC-------CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 227 STSW-----DRTFKIWRTS-------DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 227 ~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
.... .+.|.++|++ ..++...+. .+.+.++.+.|.|.++ +|++|..||.|..||+++++
T Consensus 110 ~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~------- 180 (327)
T KOG0643|consen 110 ASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGK------- 180 (327)
T ss_pred EEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCc-------
Confidence 7753 4679999998 345566666 5678999999999554 99999999999999998875
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l 372 (450)
..+..-..|...|+.|++++|..++++++.|.+-++||..+.+.+ ..+ ....+|++.++.| +.+
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~-------------Kty-~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL-------------KTY-TTERPVNTAAISPLLDHV 246 (327)
T ss_pred eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE-------------EEe-eecccccceecccccceE
Confidence 255666778999999999999999999999999999999986654 122 2356788888775 355
Q ss_pred EEEe-CCCe-EEEeeCCCCcccc----CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 373 FSGS-SDNT-IRIWRRSSSVTDH----QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 373 ~s~~-~dg~-v~iwd~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
+.|+ .+-. |.--+.+.++.+. .--.+.+...++|-++|++|+|+|+|+ ..++|+.||.|++
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-------------sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-------------SYSSGGEDGYVRL 313 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-------------ccccCCCCceEEE
Confidence 5444 3321 2111222111000 000144667899999999999999999 8999999999998
Q ss_pred EEe
Q 041325 447 WQI 449 (450)
Q Consensus 447 w~l 449 (450)
.-+
T Consensus 314 h~F 316 (327)
T KOG0643|consen 314 HHF 316 (327)
T ss_pred EEe
Confidence 643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=225.00 Aligned_cols=247 Identities=23% Similarity=0.405 Sum_probs=212.4
Q ss_pred eEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 121 VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
..+.+|++.|+.+.|+|++ |++|+.|..|.+|++-...
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3477999999999999988 9999999999999976552
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
+....+.+|.+.|..+.|.+|++.+++++.|.+++.||+++|+++..++ .|..-|+++.-...+..++.+++.||++
T Consensus 81 --eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 81 --ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred --cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceE
Confidence 1223344899999999999999999999999999999999999999999 8999999998665555578999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
++||+++.+ .++.+. .+.+++++.|..++..+++|+-|+.|++||++.+..+ ..+.+|
T Consensus 158 kl~D~R~k~--------~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-------------~~lsGh 215 (338)
T KOG0265|consen 158 KLWDIRKKE--------AIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-------------YTLSGH 215 (338)
T ss_pred EEEeecccc--------hhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcce-------------EEeecc
Confidence 999998766 566554 4678999999999999999999999999999987654 688999
Q ss_pred ccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc----ceEEEEEEecCCCCCCCCCCCCce
Q 041325 359 TKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR----PVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
..+|+.++.+ +.++.+-++|.++++||++.- ....+++..+.+|.. ....++|+|++.
T Consensus 216 ~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~----~p~~R~v~if~g~~hnfeknlL~cswsp~~~------------ 279 (338)
T KOG0265|consen 216 ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF----APSQRCVKIFQGHIHNFEKNLLKCSWSPNGT------------ 279 (338)
T ss_pred cCceeeEEeccCCCccccccccceEEEEEeccc----CCCCceEEEeecchhhhhhhcceeeccCCCC------------
Confidence 9999999987 569999999999999999864 333466777777643 456778999999
Q ss_pred EEEEEcccCCcEEEEEe
Q 041325 433 FLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l 449 (450)
.+..|+.|..+++||.
T Consensus 280 -~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 280 -KITAGSADRFVYVWDT 295 (338)
T ss_pred -ccccccccceEEEeec
Confidence 8999999999999985
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=210.70 Aligned_cols=241 Identities=20% Similarity=0.342 Sum_probs=204.7
Q ss_pred eeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
...+..|.++|.++.|+.++ .++++.|++|++|+...+ ..+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------~li--------------------- 52 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------ALI--------------------- 52 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----------------cee---------------------
Confidence 33567899999999999554 999999999999999888 233
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
.++.+|...|..++.+.|+..|++|+.|..+.+||+++|+.++.+. +|...|+.+.|+. ....+++|+.|..
T Consensus 53 ------ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNe-esSVv~SgsfD~s 124 (307)
T KOG0316|consen 53 ------KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNE-ESSVVASGSFDSS 124 (307)
T ss_pred ------eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc-cccceeeEEEecC-cceEEEeccccce
Confidence 3455899999999999999999999999999999999999999999 9999999999997 4448999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+++||.+... .++++.+......|.++... +..|++|+.||+++.||++.|+.. ...
T Consensus 125 ~r~wDCRS~s------~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-------------sDy-- 181 (307)
T KOG0316|consen 125 VRLWDCRSRS------FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-------------SDY-- 181 (307)
T ss_pred eEEEEcccCC------CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-------------hhh--
Confidence 9999998743 45788888888999999885 678999999999999999988743 223
Q ss_pred CccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEE--EEecCCCCCCCCCCCCceE
Q 041325 358 HTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT--AVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 358 ~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~~~~~~~~~~~~ 433 (450)
-..+|++++|+ ++..+.++.|+++++.|-.++ +.+..+++|...-..+. +.....
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG--------klL~sYkGhkn~eykldc~l~qsdt------------- 240 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG--------KLLKSYKGHKNMEYKLDCCLNQSDT------------- 240 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchh--------HHHHHhcccccceeeeeeeecccce-------------
Confidence 34578888887 568999999999999998886 78888999987655444 334444
Q ss_pred EEEEcccCCcEEEEEe
Q 041325 434 LVYSGSLDCEIKIWQI 449 (450)
Q Consensus 434 ~l~s~~~Dg~i~iw~l 449 (450)
.+++|++||.|++|||
T Consensus 241 hV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDL 256 (307)
T ss_pred eEEeccCCceEEEEEe
Confidence 8999999999999997
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=239.29 Aligned_cols=278 Identities=26% Similarity=0.513 Sum_probs=234.5
Q ss_pred cceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE-EEEeC-C
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS-LVVLG-D 138 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~-~ 138 (450)
.+++-+.+. ||...|+.+++ ++..++++|.||++++|+-..++.+.. ..+.+|.+.|.. +++.+ +
T Consensus 3 ~Y~ls~~l~--gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~----------~~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 3 QYKLSHELE--GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET----------HAFEGPKGFIANSICYAESD 70 (745)
T ss_pred cceeEEEec--cCccchheeEecCCeEEeecCCCCceeeeeccCcccccc----------eecccCcceeeccceecccc
Confidence 456777787 99999999999 788899999999999999877665543 235577777777 77764 2
Q ss_pred --eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 139 --KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 139 --~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
.+++|+.|++|.+|...+. .+...+.+|...|.++
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~-------------------------------------------~P~~~LkgH~snVC~l 107 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQA-------------------------------------------EPLYTLKGHKSNVCSL 107 (745)
T ss_pred CcceEeecccceEEEEecCCC-------------------------------------------Cchhhhhccccceeee
Confidence 2999999999999999887 2333455899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
+...++. +++|+.|.++++|-.. ++...++ +|...|+++...| ++.+++|+.|..|++|.- ...
T Consensus 108 s~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~-gH~asVWAv~~l~--e~~~vTgsaDKtIklWk~----------~~~ 171 (745)
T KOG0301|consen 108 SIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQ-GHTASVWAVASLP--ENTYVTGSADKTIKLWKG----------GTL 171 (745)
T ss_pred ecCCcCc-eEecccccceEEecch--hhhcccC-CcchheeeeeecC--CCcEEeccCcceeeeccC----------Cch
Confidence 9888887 9999999999999874 4555566 9999999999996 448999999999999974 237
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFS 374 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 374 (450)
++++.+|...|+.+++-+++ .+++++.||.|+.|++ +++++ ..+.+|..-|.+++.. .+.+++
T Consensus 172 l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l-------------~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 172 LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVL-------------LEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred hhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCcee-------------eeeeccceEEEEEEecCCCCeEEE
Confidence 89999999999999999764 5889999999999999 56655 6788999999999954 459999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++|++++||+.. .+.+.+.-....|+++.+.+++. +++|+.||.||||..
T Consensus 237 ~gEDrtlriW~~~----------e~~q~I~lPttsiWsa~~L~NgD--------------Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD----------ECVQVITLPTTSIWSAKVLLNGD--------------IVVGGSDGRVRVFTV 287 (745)
T ss_pred ecCCceEEEeecC----------ceEEEEecCccceEEEEEeeCCC--------------EEEeccCceEEEEEe
Confidence 9999999999976 57788876677999999999998 999999999999975
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=236.86 Aligned_cols=255 Identities=21% Similarity=0.323 Sum_probs=214.4
Q ss_pred CCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeec
Q 041325 116 GDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA 192 (450)
Q Consensus 116 ~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (450)
+......+.+|+..|.++.|.|.. |++++.|+.|+||++-... .
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~---------------~------------------ 249 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR---------------R------------------ 249 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc---------------c------------------
Confidence 344556688999999999999844 9999999999999987641 2
Q ss_pred CceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE
Q 041325 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
...++.+|..+|.+++|+.+|..+++++.|+.|++||+++|+++..+. ....+.++.|+|++.+.+++|
T Consensus 250 ---------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 250 ---------CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred ---------eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEe
Confidence 334556899999999999999999999999999999999999999997 667889999999887899999
Q ss_pred cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
+.|+.|+.||+++++ .++.+..|-+.|..+.|-++|+++++.+.|+.++||+.+.+..+ ...
T Consensus 319 ~sd~ki~~wDiRs~k--------vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i----------k~i 380 (503)
T KOG0282|consen 319 GSDKKIRQWDIRSGK--------VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI----------KNI 380 (503)
T ss_pred cCCCcEEEEeccchH--------HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc----------hhh
Confidence 999999999999988 89999999999999999999999999999999999999876543 122
Q ss_pred ccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC--cceEEEEEEecCCCCCCCCCCCC
Q 041325 353 GALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR--RPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
.....|+-+...+..++.++++-+.|+.|.++.+.. .........+.+|. +.-..+.|+||+.
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-----~~r~nkkK~feGh~vaGys~~v~fSpDG~---------- 445 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-----PFRLNKKKRFEGHSVAGYSCQVDFSPDGR---------- 445 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEeccc-----ccccCHhhhhcceeccCceeeEEEcCCCC----------
Confidence 333445555555555677999999999999998764 22234445667775 4466789999999
Q ss_pred ceEEEEEcccCCcEEEEEeC
Q 041325 431 TSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.||.+.+||-+
T Consensus 446 ---~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 446 ---TLCSGDSDGKVNFWDWK 462 (503)
T ss_pred ---eEEeecCCccEEEeech
Confidence 99999999999999964
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=226.41 Aligned_cols=280 Identities=23% Similarity=0.370 Sum_probs=217.8
Q ss_pred CCccceeeeEEeecCCCcceEEEEE---e--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI---A--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~---d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
+...+++..++. ||.++|.++++ | ...|++++.|.++++|..+.+....... ....||...|-++
T Consensus 130 Wd~~Gk~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~--------~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 130 WDLKGKSIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL--------KVCRGHKRSVDSV 199 (423)
T ss_pred EecCCceEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH--------hHhcccccceeEE
Confidence 446678888888 99999999998 2 3469999999999999988776433211 1134999999999
Q ss_pred EEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 134 VVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 134 ~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
...+++ +++|+.|.+|++|+.+.................... ......+.+...+.+|..
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~------------------~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR------------------EKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh------------------hhcccccCceEEeccccc
Confidence 988666 999999999999994433211110000000000000 000112345567789999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+|.++.|++ ...+++++.|.+|+.||+.++.....+. .....+++..+| ...+|++|+.|..+++||.+++.
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~---- 333 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGD---- 333 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeeccc-ccceeeecCCCCceeecCCCCCC----
Confidence 999999998 6679999999999999999999988886 677899999998 45599999999999999998875
Q ss_pred ccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-
Q 041325 292 KKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS- 369 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 369 (450)
.....+.+.+|++.|.++.|+| +...|++|+.|+++++||+++.+. +...+.+|...|.++.|..
T Consensus 334 -gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~------------plydI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 334 -GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA------------PLYDIAGHNDKVLSVDWNEG 400 (423)
T ss_pred -CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC------------cceeeccCCceEEEEeccCC
Confidence 2235667889999999999999 556789999999999999998651 2367889999999999995
Q ss_pred CeEEEEeCCCeEEEeeCC
Q 041325 370 NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~ 387 (450)
.+|++|+.|..|+|+.-.
T Consensus 401 ~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 401 GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEeccCcceEEEeccc
Confidence 599999999999999754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=216.77 Aligned_cols=299 Identities=17% Similarity=0.298 Sum_probs=225.9
Q ss_pred cCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCc------eeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE
Q 041325 72 KGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNY------VNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF 141 (450)
Q Consensus 72 ~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~ 141 (450)
..|..++++-+| ||.++|||+.|-.|+|.|++.... +..........-.-.+..|.+.|+++.|+|.. |+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 389999999999 899999999999999999873211 11111111222334577899999999999877 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+|+.|++|+++|+...... .... ......+|.++.|+|.
T Consensus 189 S~srD~tvKlFDfsK~saK-------------rA~K----------------------------~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAK-------------RAFK----------------------------VFQDTEPVRSISFHPS 227 (430)
T ss_pred eccCCCeEEEEecccHHHH-------------HHHH----------------------------HhhccceeeeEeecCC
Confidence 9999999999999765221 0011 1123458999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
|.+++.|....++++||+++.++...-. ..|.+.|+++.+++.. .+.++++.||.|++||--.++ ++.+
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--------Cv~t 298 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--------CVRT 298 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--------HHHH
Confidence 9999999999999999999988876543 3688999999999844 489999999999999976665 6666
Q ss_pred Hhh-c-ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEE
Q 041325 300 LEK-H-KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSG 375 (450)
Q Consensus 300 ~~~-~-~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 375 (450)
+.. | .+.|.+..|..+|+++++.+.|..+++|.+.+++.+......... +...--+...|+ .++++.-
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t--------grq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT--------GRQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc--------cchhhhhhhhhcCccceEEcc
Confidence 543 3 357999999999999999999999999999999887533322111 001111233344 3455544
Q ss_pred e-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 376 S-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 376 ~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
. ..+.+.-||.++.. +.-..-.+|++.+..+.-+|.+. .++|||.|-.+|+|-
T Consensus 371 DEas~slcsWdaRtad-------r~~l~slgHn~a~R~i~HSP~~p-------------~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 371 DEASNSLCSWDARTAD-------RVALLSLGHNGAVRWIVHSPVEP-------------AFMTCSDDFRARFWY 424 (430)
T ss_pred ccccCceeeccccchh-------hhhhcccCCCCCceEEEeCCCCC-------------ceeeecccceeeeee
Confidence 4 35679999998751 22223357999999999999999 899999999999995
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=230.52 Aligned_cols=282 Identities=17% Similarity=0.307 Sum_probs=229.3
Q ss_pred eeeEEeecCCCcceEEEEEeC---CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEE
Q 041325 65 CSATLKVKGNSSYIPSLAIAG---KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLF 141 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~d~---~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~ 141 (450)
.+..|. ||.+.|.|++-+. ..+|+|+.||.|+|||+....+... +..|.+.|..|++....++
T Consensus 58 Fv~~L~--gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~------------f~AH~G~V~Gi~v~~~~~~ 123 (433)
T KOG0268|consen 58 FVGSLD--GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT------------FKAHEGLVRGICVTQTSFF 123 (433)
T ss_pred chhhcc--ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe------------eecccCceeeEEecccceE
Confidence 345566 9999999999953 5689999999999999998887776 7899999999999998899
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.|++|+.|.++... +.++ .....+..+.-+..
T Consensus 124 tvgdDKtvK~wk~~~~p-----------------~~ti----------------------------lg~s~~~gIdh~~~ 158 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPP-----------------LHTI----------------------------LGKSVYLGIDHHRK 158 (433)
T ss_pred EecCCcceeeeeccCCc-----------------ceee----------------------------eccccccccccccc
Confidence 99999999999987631 0000 12335667777777
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+..+++++ ..|.|||.....++..+. -....|.++.|+|....+|++++.|+.|.+||+++.. +++...
T Consensus 159 ~~~FaTcG--e~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~--------Pl~KVi 227 (433)
T KOG0268|consen 159 NSVFATCG--EQIDIWDEQRDNPVSSMS-WGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS--------PLKKVI 227 (433)
T ss_pred cccccccC--ceeeecccccCCccceee-cCCCceeEEecCCCcchheeeeccCCceEEEecccCC--------ccceee
Confidence 88899888 469999999888998887 5567899999999888889999999999999998876 444443
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCC
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDN 379 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 379 (450)
....-+.|+|+|.+-.+++|++|..++.||++.... +.....+|.+.|+.+.|+ |+-+++||.|.
T Consensus 228 -~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~------------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 228 -LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR------------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred -eeccccceecCccccceeeccccccceehhhhhhcc------------cchhhcccceeEEEeccCCCcchhccccccc
Confidence 234457899999888899999999999999986542 346788999999999998 56999999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|+||..+.+... .+. ....-..|.++.|+.|.+ ++++||+|+.|++|.-
T Consensus 295 sIRIf~~~~~~SR------diY-htkRMq~V~~Vk~S~Dsk-------------yi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 295 SIRIFPVNHGHSR------DIY-HTKRMQHVFCVKYSMDSK-------------YIISGSDDGNVRLWKA 344 (433)
T ss_pred eEEEeecCCCcch------hhh-hHhhhheeeEEEEecccc-------------EEEecCCCcceeeeec
Confidence 9999999865211 010 011234699999999999 9999999999999974
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=248.55 Aligned_cols=286 Identities=20% Similarity=0.311 Sum_probs=209.1
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCc------------ccccceee-----eeeccCCCcc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGK------------LKNKYYER-----IATLPTLNDR 185 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~------------~~~~~~~~-----~~~~~~~~~~ 185 (450)
.|.+.|+++.|++|+ ||+||.||.|+||.+............. ..+..... -.........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 899999999999887 9999999999999987732211000000 00000000 0000000000
Q ss_pred eeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC
Q 041325 186 FTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN 265 (450)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 265 (450)
......+...-.+...+.+.+.+|.+.|.++.|+.++ +|++++.|.+|++|++...+|+..|. |.+.|+||+|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccC
Confidence 0001222233344567788899999999999999765 79999999999999999999999996 99999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
++++++|+-||.||||++...+ .+. +.....-|++++|.|||++.++|+.+|..++|+....+......-
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~--------Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I- 491 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKK--------VVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI- 491 (712)
T ss_pred CCcEeecccccceEEeecCcCe--------eEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE-
Confidence 9999999999999999997665 333 333458899999999999999999999999999998776532111
Q ss_pred CCceeeec-cccCCccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc--ceEEEEEEecC
Q 041325 346 SGHMVLKG-ALRGHTKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR--PVKCLTAVVDS 419 (450)
Q Consensus 346 ~~~~~~~~-~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~ 419 (450)
.... .-..|. .|+++.+. ++.+++.+.|..|||+|.+.. .++..++|+.. .-....|+.||
T Consensus 492 ----~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--------~lv~KfKG~~n~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 492 ----RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--------DLVHKFKGFRNTSSQISASFSSDG 558 (712)
T ss_pred ----eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch--------hhhhhhcccccCCcceeeeEccCC
Confidence 1111 112233 89999997 346888899999999999652 55666666543 23456788898
Q ss_pred CCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+ +|+++++|..|+||++
T Consensus 559 k-------------~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 559 K-------------HIVSASEDSWVYIWKN 575 (712)
T ss_pred C-------------EEEEeecCceEEEEeC
Confidence 8 9999999999999996
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=230.92 Aligned_cols=277 Identities=21% Similarity=0.349 Sum_probs=228.6
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCC
Q 041325 28 SELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN 105 (450)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~ 105 (450)
...+++++.|+|..| ..++.+++.+.++++.......+++. -....|.++.| ||++||+|...|.|+|+|..+.
T Consensus 25 e~~~vssl~fsp~~P--~d~aVt~S~rvqly~~~~~~~~k~~s--rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHP--YDFAVTSSVRVQLYSSVTRSVRKTFS--RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCC--CceEEecccEEEEEecchhhhhhhHH--hhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 355667788877765 56888999999999999999999888 78899999999 8999999999999999997665
Q ss_pred CceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCC
Q 041325 106 NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTL 182 (450)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (450)
..+.. +.+|..+|..+.|++.. +++|+.|+.+++||+.+..
T Consensus 101 ~iLR~------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~------------------------ 144 (487)
T KOG0310|consen 101 VILRQ------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY------------------------ 144 (487)
T ss_pred HHHHH------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE------------------------
Confidence 54444 77999999999999665 8999999999999999872
Q ss_pred CcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCC-eEEEEeecccccceEEEE
Q 041325 183 NDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIV 260 (450)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~ 260 (450)
....+.+|++.|.|.+|+| ++.++++|+.||.|++||++.. ..+.++. |..+|..+.
T Consensus 145 -------------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl 203 (487)
T KOG0310|consen 145 -------------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVL 203 (487)
T ss_pred -------------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEE
Confidence 1223457999999999999 5668999999999999999987 5666664 999999999
Q ss_pred EeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 261 VSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 261 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
+.|.+ ..+++++. ..|++||+.++. +.+..+..|...|+|+++..++..|++|+-|+.+++||+.+-+.+
T Consensus 204 ~lpsg-s~iasAgG-n~vkVWDl~~G~-------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv- 273 (487)
T KOG0310|consen 204 ALPSG-SLIASAGG-NSVKVWDLTTGG-------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV- 273 (487)
T ss_pred EcCCC-CEEEEcCC-CeEEEEEecCCc-------eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE-
Confidence 99843 46777665 579999997554 255556669999999999999999999999999999998766544
Q ss_pred eCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 341 DGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
..+ ...++|.+++.++ +.++.|..||.+.+=+...
T Consensus 274 ------------~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 274 ------------HSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ------------Eee-ecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 222 3468899999886 5999999999987775444
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=223.06 Aligned_cols=298 Identities=21% Similarity=0.307 Sum_probs=239.5
Q ss_pred cceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
+-++.+++++ |..+.+-|..| ||++|++|+.||.|.|||..+++..+-.+.... -.+..+..+|.|+.|+.|.
T Consensus 201 Pt~l~r~IKF-g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq----d~fMMmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 201 PTQLARSIKF-GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ----DNFMMMDDAVLCISFSRDS 275 (508)
T ss_pred hHHhhhheec-ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh----cceeecccceEEEeecccH
Confidence 3456667775 77788889999 999999999999999999999886544322211 1256788999999999877
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
+++|+.||.|++|.++++ .|+..+. ..|+..|+|+.
T Consensus 276 EMlAsGsqDGkIKvWri~tG----------------~ClRrFd--------------------------rAHtkGvt~l~ 313 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETG----------------QCLRRFD--------------------------RAHTKGVTCLS 313 (508)
T ss_pred HHhhccCcCCcEEEEEEecc----------------hHHHHhh--------------------------hhhccCeeEEE
Confidence 999999999999999999 4444433 15999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
|+.|+..+++++.|.++++.-+.+|+++..++ +|.+.|+...|.++ +..+++++.||+|++|+..+.+ ++
T Consensus 314 FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktte--------C~ 383 (508)
T KOG0275|consen 314 FSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTTE--------CL 383 (508)
T ss_pred EccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCC-CCeEEEecCCccEEEecCcchh--------hh
Confidence 99999999999999999999999999999999 99999999999984 4489999999999999998877 55
Q ss_pred hhHhh--cccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc-eEE-EEEeCCeE
Q 041325 298 QTLEK--HKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA-ILC-LAVVSNLL 372 (450)
Q Consensus 298 ~~~~~--~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~-~~~~~~~l 372 (450)
.+++. ...+|.++-.-| +...++++...++|+|.++.. +.+..+... +...+. |.| ++..|+++
T Consensus 384 ~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSG----------kREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 384 STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSG----------KREGGDFINAILSPKGEWI 452 (508)
T ss_pred hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccC----------CccCCceEEEEecCCCcEE
Confidence 55543 445778887777 556888898999999998863 322111110 011122 322 33347799
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.+.+.|+.++.|.+.++ +....+.-|...|..++-+|..+ ++++-+.||.+++|.
T Consensus 453 YcigED~vlYCF~~~sG--------~LE~tl~VhEkdvIGl~HHPHqN-------------llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSG--------KLERTLPVHEKDVIGLTHHPHQN-------------LLASYSEDGLLKLWK 507 (508)
T ss_pred EEEccCcEEEEEEeecC--------ceeeeeecccccccccccCcccc-------------hhhhhcccchhhhcC
Confidence 99999999999999986 66778888999999999999999 999999999999995
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=209.96 Aligned_cols=211 Identities=28% Similarity=0.486 Sum_probs=187.9
Q ss_pred eeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 204 CTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
..+.+|.+.+..++|+|- |..|++|+.|..|++|+... ..+...+..+|+..|.+++|+|.+. +|++++.|.++.
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~ 86 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVV 86 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEE
Confidence 355689999999999997 89999999999999999984 5666777778999999999999655 999999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
||.-..+ .++.+..+++|+..|.+++|+++|++||+++.|..|-||.+.... .......+..|.
T Consensus 87 Iw~k~~~------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd----------Efec~aVL~~Ht 150 (312)
T KOG0645|consen 87 IWKKEDG------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD----------EFECIAVLQEHT 150 (312)
T ss_pred EeecCCC------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC----------cEEEEeeecccc
Confidence 9986543 345788999999999999999999999999999999999998543 345678899999
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
..|..+.|+| ++|++++.|++|++|+-.. ...+.++..+.+|...|.+++|.+.|. .|++
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-----dddW~c~~tl~g~~~TVW~~~F~~~G~-------------rl~s 212 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-----DDDWECVQTLDGHENTVWSLAFDNIGS-------------RLVS 212 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecC-----CCCeeEEEEecCccceEEEEEecCCCc-------------eEEE
Confidence 9999999998 6999999999999998763 335899999999999999999999998 8999
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
+++|++|+||.+
T Consensus 213 ~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 213 CSDDGTVSIWRL 224 (312)
T ss_pred ecCCcceEeeee
Confidence 999999999974
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=243.64 Aligned_cols=249 Identities=27% Similarity=0.473 Sum_probs=221.2
Q ss_pred CCCCCccceeeeE-EeecCCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 56 QAPAASEHQCSAT-LKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 56 ~~~~~~~~~~~~~-l~~~~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
..+...++..+.+ +. ||.+.|.++++. +.+|++|+.|.+++|||..++++... +.+|.+.|.+
T Consensus 231 ~~~~~~~~~~i~~~l~--GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~------------l~gh~stv~~ 296 (537)
T KOG0274|consen 231 HLWDLNNGYLILTRLV--GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS------------LQGHTSSVRC 296 (537)
T ss_pred EEeecccceEEEeecc--CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE------------ecCCCceEEE
Confidence 4566666777777 88 999999999996 99999999999999999999999887 7899999999
Q ss_pred EEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 133 LVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 133 l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
+...+..+++|+.|.+|++|++++++ ++. .+.+|.++
T Consensus 297 ~~~~~~~~~sgs~D~tVkVW~v~n~~----------------~l~---------------------------l~~~h~~~ 333 (537)
T KOG0274|consen 297 LTIDPFLLVSGSRDNTVKVWDVTNGA----------------CLN---------------------------LLRGHTGP 333 (537)
T ss_pred EEccCceEeeccCCceEEEEeccCcc----------------eEE---------------------------Eecccccc
Confidence 99999999999999999999999882 222 23359999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch-hhhcc
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA-ALQVN 291 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~ 291 (450)
|+++..+ +.++++|+.|++|++||+.+++++..+. +|...|.++.+.. ...+++|+.|+.|++||+++. +
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~--~~~~~Sgs~D~~IkvWdl~~~~~---- 404 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDS--ENRLLSGSLDTTIKVWDLRTKRK---- 404 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecC--cceEEeeeeccceEeecCCchhh----
Confidence 9999998 8899999999999999999999999999 8999999998863 269999999999999999887 5
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeCC
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVSN 370 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 370 (450)
++..+.+|.+-+..+.+ .+++|++++.|+.|++||..+++++ ..+.+ |...|.++++...
T Consensus 405 ----c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~-------------~~~~~~~~~~v~~l~~~~~ 465 (537)
T KOG0274|consen 405 ----CIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL-------------RTLEGRHVGGVSALALGKE 465 (537)
T ss_pred ----hhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee-------------eeeccCCcccEEEeecCcc
Confidence 89999999998877766 5789999999999999999998866 45555 6788999988877
Q ss_pred eEEEEeCCCeEEEeeCCCC
Q 041325 371 LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~ 389 (450)
.+++++.||.+++||++++
T Consensus 466 ~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred eEEEEecCCeeEEEecccC
Confidence 9999999999999999986
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=212.28 Aligned_cols=240 Identities=19% Similarity=0.258 Sum_probs=201.3
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCC
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~d 146 (450)
.-.+.+..++| ..+.+++++.||++++||+.... .+...++.|...|.++.|++.. +++++.|
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-----------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-----------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-----------cchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 46778999999 47899999999999999954322 1233478999999999998543 8888999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
++|++|+..... ...++.+|...|...+|+| .++++
T Consensus 127 ~TiKLW~~~r~~-------------------------------------------Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 127 GTIKLWDPNRPN-------------------------------------------SVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred CceEeecCCCCc-------------------------------------------ceEeecCCccEEEEEecCCCCCCeE
Confidence 999999998772 3334568999999999999 78999
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
++++.|+.+++||++.......+. .|...+.++.|+..+.+++++|+.|+.|+.||+++-+ .++..+.+|.-
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------~pl~eL~gh~~ 235 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------TPLFELNGHGL 235 (311)
T ss_pred EEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-------ccceeecCCce
Confidence 999999999999998754444466 7889999999999888899999999999999998755 36778899999
Q ss_pred ceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCeEEEEeCCCeE
Q 041325 306 AVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLFSGSSDNTI 381 (450)
Q Consensus 306 ~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v 381 (450)
.|..++|+|. ..+|++++.|-+++|||...+.- .......|+.-+..+.|+ +.++|+++.|+.+
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds------------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDS------------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchh------------hhhhhhccceEEeccccccccCceeeecccccce
Confidence 9999999994 46899999999999999985432 335666788889999987 6699999999999
Q ss_pred EEeeC
Q 041325 382 RIWRR 386 (450)
Q Consensus 382 ~iwd~ 386 (450)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=245.39 Aligned_cols=243 Identities=29% Similarity=0.486 Sum_probs=203.7
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
.|...|.++.|++++ +++++.|+.+++|+...... ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------------------------------~~ 195 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------------------------------NL 195 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------------------------------hh
Confidence 347899999999877 99999999999999965520 01
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec-CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT-SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
...+.+|...|.+++|+|+++++++++.|++|++||+ ..+..++.+. +|...|++++|+|.+ +++++|+.|+.|++|
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIW 273 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEE
Confidence 1222479999999999999999999999999999999 5558888888 999999999999976 799999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc-
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK- 360 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 360 (450)
|+++++ +...+.+|...|++++|++++++|++++.|+.|++||+.++... ....+..+..
T Consensus 274 d~~~~~--------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-----------~~~~~~~~~~~ 334 (456)
T KOG0266|consen 274 DVRTGE--------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-----------CLKLLSGAENS 334 (456)
T ss_pred eccCCe--------EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-----------eeecccCCCCC
Confidence 998866 88899999999999999999999999999999999999988721 1134444444
Q ss_pred -ceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcce---EEEEEEecCCCCCCCCCCCCceEE
Q 041325 361 -AILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV---KCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 361 -~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
+++++.|++ .++++++.|+.+++||+..+ .+...+.+|...+ .+...++.+. +
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 393 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSG--------KSVGTYTGHSNLVRCIFSPTLSTGGK-------------L 393 (456)
T ss_pred CceeEEEECCCCcEEEEecCCCeEEEEEccCC--------cceeeecccCCcceeEecccccCCCC-------------e
Confidence 489999984 49999999999999999975 6777788887753 3334445555 9
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
+++|+.|+.|++|++.
T Consensus 394 i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEEEeCCceEEEEeCC
Confidence 9999999999999973
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=209.64 Aligned_cols=270 Identities=19% Similarity=0.309 Sum_probs=209.9
Q ss_pred ccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
..+.+...|.++.|.++|++++.++.++|+|+.|-+|+|||+........ +..|.+.|+++.|.+..
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~------------ll~HagsitaL~F~~~~S 96 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGI------------LLSHAGSITALKFYPPLS 96 (362)
T ss_pred cceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcc------------eeccccceEEEEecCCcc
Confidence 33445556666699999999999999999999999999999988775554 67899999999998655
Q ss_pred ---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 140 ---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 140 ---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
|++|+.||.|.+|+...- ..+ ..+..|.+.|+.+
T Consensus 97 ~shLlS~sdDG~i~iw~~~~W----------------~~~---------------------------~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 97 KSHLLSGSDDGHIIIWRVGSW----------------ELL---------------------------KSLKAHKGQVTDL 133 (362)
T ss_pred hhheeeecCCCcEEEEEcCCe----------------EEe---------------------------eeeccccccccee
Confidence 999999999999999865 222 2345799999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
+++|.+++.++.+.|+.+++||+-+|+.-..+...+ ....+.|+|.++ +++.+..+ .|-+|.+.+.. .
T Consensus 134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd-~F~v~~~~-~i~i~q~d~A~--------v 201 (362)
T KOG0294|consen 134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGD-HFVVSGRN-KIDIYQLDNAS--------V 201 (362)
T ss_pred EecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCC-EEEEEecc-EEEEEecccHh--------H
Confidence 999999999999999999999999998766665333 345599998665 56666664 48899986655 3
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC----eE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN----LL 372 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l 372 (450)
...+. ....+.++.|. ++..|++|..|+.|.+||..+..+. ..+.+|...|.++.+..+ +|
T Consensus 202 ~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~-------------~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 202 FREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPL-------------TEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred hhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccc-------------eeeecchhheeeeEEEecCCceEE
Confidence 44433 33557777776 6778999999999999999976544 788999999999996533 99
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
+|+|.||.|++||++.... .+...+..+.. ...++|+...
T Consensus 267 vTaSSDG~I~vWd~~~~~k---~~~~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMETK---KRPTLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred EEeccCceEEEEEcccccc---CCcceeEEeec-CCccceeeeh
Confidence 9999999999999986421 22234444432 4556666543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=245.39 Aligned_cols=256 Identities=18% Similarity=0.298 Sum_probs=194.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCce-----------------------eee----------------
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYV-----------------------NIT---------------- 111 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~-----------------------~~~---------------- 111 (450)
+|.+.|.++.| ||+|||+|+.||.|+||.+...+.. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 89999999999 9999999999999999987651000 000
Q ss_pred ---------ecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccC
Q 041325 112 ---------STDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPT 181 (450)
Q Consensus 112 ---------~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (450)
.......+...+.||.+.|.+|.|+.++ |++++.|++||+|++... .|+..+.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~- 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS- 407 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe-
Confidence 0000112334577999999999999666 999999999999999988 6666664
Q ss_pred CCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEE
Q 041325 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIV 260 (450)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 260 (450)
|.+-|+|++|+| |.++|++|+-||.||||++...+.+.-.. ...-|++++
T Consensus 408 ---------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvc 458 (712)
T KOG0283|consen 408 ---------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVC 458 (712)
T ss_pred ---------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEE
Confidence 999999999999 89999999999999999999877666554 558999999
Q ss_pred EeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCcee
Q 041325 261 VSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 261 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
+.|+ ++..++|+.+|.+++|+....+............-+.....|+.+.|.|. ...+++.+.|..|+|||.++.+.+
T Consensus 459 y~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 459 YSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred eccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence 9996 55899999999999999877663322211111111112237999999983 346888889999999999876544
Q ss_pred eeCCCCCCceeeeccccCCccc---e-EEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 340 VDGDDDSGHMVLKGALRGHTKA---I-LCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
..++++... + .++.-+|++|++++.|..|++|++..
T Consensus 538 -------------~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 538 -------------HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -------------hhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 344443222 2 23333588999999999999999743
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=259.48 Aligned_cols=276 Identities=18% Similarity=0.284 Sum_probs=214.3
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCccccc
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK 171 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 171 (450)
+|.+++|+............. .+..|.+.|.+++|++++ +++|+.|+.|++|++...... ..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~-------~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----~~---- 520 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQG-------DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----GR---- 520 (793)
T ss_pred hhhhhhhcccceEEEEeeccc-------cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----cc----
Confidence 678889988765543321111 145689999999999776 999999999999998643100 00
Q ss_pred ceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeec
Q 041325 172 YYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKN 250 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (450)
.. . .....+ .+...+.+++|++ ++.+|++++.||.|++||+.+++.+..+.
T Consensus 521 ---~~-~----------------------~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~- 572 (793)
T PLN00181 521 ---DI-H----------------------YPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK- 572 (793)
T ss_pred ---cc-c----------------------cceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-
Confidence 00 0 000011 2345789999987 57899999999999999999999888887
Q ss_pred ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc-CCCCEEEEeeCCCcEE
Q 041325 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS-TDGTVLYSGACDRSIL 329 (450)
Q Consensus 251 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~g~~dg~i~ 329 (450)
.|...|.+++|+|.++.+|++|+.||.|++||++++. .+..+.. ...+.++.|+ +++.+|++|+.||.|+
T Consensus 573 ~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--------SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--------EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 8999999999997666699999999999999997665 3333433 3578999995 5799999999999999
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR 408 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 408 (450)
+||+++.+. ....+.+|...|.++.|. +.+|++++.|+.|++||+..+.. .....++..+.+|..
T Consensus 644 iwD~~~~~~------------~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~--~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 644 YYDLRNPKL------------PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS--GINETPLHSFMGHTN 709 (793)
T ss_pred EEECCCCCc------------cceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc--ccCCcceEEEcCCCC
Confidence 999986542 123556899999999997 56999999999999999975311 112356778899999
Q ss_pred ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 409 PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 409 ~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+..++|++++. +|++|+.||.|++|+.
T Consensus 710 ~i~~v~~s~~~~-------------~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 710 VKNFVGLSVSDG-------------YIATGSETNEVFVYHK 737 (793)
T ss_pred CeeEEEEcCCCC-------------EEEEEeCCCEEEEEEC
Confidence 999999999998 9999999999999985
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=221.33 Aligned_cols=274 Identities=21% Similarity=0.362 Sum_probs=220.0
Q ss_pred CccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCC
Q 041325 17 PKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSN 94 (450)
Q Consensus 17 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~d 94 (450)
+.|+|++..++++++..+.-.- ...+. ...++.+++. ||..+|..+.| |.++|++++.|
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw----------------~v~~d-~~~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIW----------------IVVYD-VHFKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEE----------------EEecC-cceeeeeeee--cccCceEEEEECCCCCeEEecCch
Confidence 4678888888887766654220 01111 1257889999 99999999999 89999999999
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccc
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKY 172 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 172 (450)
..+++||+.++...... -.+|...+.+++|.||+ +++|+.|+++..||++......
T Consensus 291 e~~~lwDv~tgd~~~~y-----------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----------- 348 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLY-----------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN----------- 348 (519)
T ss_pred HheeeccCCcchhhhhc-----------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc-----------
Confidence 99999999999866551 22456899999999998 9999999999999998763210
Q ss_pred eeeeeeccCCCcceeEeeecCceEEEeecceeeeec-CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 173 YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH-HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
+.+ ....|.+++..+||+++++.+.|..|++++.++......+.
T Consensus 349 ---------------------------------W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-- 393 (519)
T KOG0293|consen 349 ---------------------------------WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-- 393 (519)
T ss_pred ---------------------------------ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc--
Confidence 111 12368999999999999999999999999999877665554
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE--EEcC-CCCEEEEeeCCCcE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL--ALST-DGTVLYSGACDRSI 328 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~~~-~~~~l~~g~~dg~i 328 (450)
...+|+++..+.+ +.++++.-.+..+++||++... .++.+.+|+..-.-+ +|-- +..++++|++|+.|
T Consensus 394 e~~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~--------lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 394 EEQPITSFSISKD-GKLALVNLQDQEIHLWDLEENK--------LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred ccCceeEEEEcCC-CcEEEEEcccCeeEEeecchhh--------HHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 5678999999974 3477888889999999997655 888888887653322 4433 55899999999999
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~ 388 (450)
+||+..+++++ ..+.+|...|+|++|+|. ++|+++.||+||||....
T Consensus 465 yIWhr~sgkll-------------~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 465 YIWHRISGKLL-------------AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEEccCCcee-------------EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999866 789999999999999964 999999999999998763
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=215.17 Aligned_cols=330 Identities=20% Similarity=0.278 Sum_probs=244.2
Q ss_pred ceeeeEEeecCCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.++++.|. ||.+.|..++.+ ...+.+++.|.+.+||.++++.++.. +.||.+.|+++.|++.+
T Consensus 138 ~~lvre~~--GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~------------Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 138 FRLVRELE--GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT------------YTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred Eeehhhhc--ccccceeeehhhcCCcceeecccccceeEEeeccccceee------------ecccccceeeEEeccccc
Confidence 45666677 999999999994 56888999999999999999998877 88999999999999766
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEe--ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYS--TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
+++++.|++-.||...-.-.+... ..+.......++.. ....+.-... .......+.+.+.+.+|...|.+.
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD--e~~~d~d~~~---~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD--EHNRDTDSSE---KSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc--cccccccccc---ccCCceeeeeeeeeeccccceEeh
Confidence 889999999999984221100000 00000000000000 0000000000 001112345667888999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
.|-..|+.+++++.|.+..+||+++++.+..+. +|....+.++-+| ...++++.+.|-+.++||++.. ...
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-------I~s 349 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-------IQS 349 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCC-cceEEEEeccCceeEeccchhh-------cce
Confidence 999999999999999999999999999999998 9999999999998 4558999999999999999743 235
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CC-eEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SN-LLFS 374 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~l~s 374 (450)
+..|++|...|+++.|..+ ..+++|+.|.+|+|||+++.+.. ... .....+++.++.+ +. .|+.
T Consensus 350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp------------lAT-IRtdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP------------LAT-IRTDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc------------cee-eecCCccceeEeecCCceEEe
Confidence 7789999999999999965 56899999999999999976422 111 1234566777776 33 6677
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
--.+..|++||++.. .-..-+-..-++|..-|.|++|..+...+ -|+++|.|..+.=|++
T Consensus 416 PhDNRqvRlfDlnG~----RlaRlPrtsRqgHrRMV~c~AW~eehp~c-----------nLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGN----RLARLPRTSRQGHRRMVTCCAWLEEHPAC-----------NLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccCCceEEEEecCCC----ccccCCcccccccceeeeeeeccccCccc-----------ccccccccceeeeeEe
Confidence 777788999999853 11112223457899999999999887632 5899999999999987
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=209.16 Aligned_cols=276 Identities=20% Similarity=0.325 Sum_probs=213.2
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccC
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 166 (450)
.|++|+....|.-+++.-..............+.+.+..|.++|++++.++..+++|+.|-+|+|||+....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~-------- 74 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRK-------- 74 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchh--------
Confidence 477888877777776654331000011112234456789999999999999999999999999999999872
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC--EEEEEeCCCcEEEEecCCCeE
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS--LLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 244 (450)
....+..|.+.|+++.|.+... .|++|+.||.|.+|+....++
T Consensus 75 -----------------------------------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~ 119 (362)
T KOG0294|consen 75 -----------------------------------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL 119 (362)
T ss_pred -----------------------------------hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence 2223446999999999998654 899999999999999999999
Q ss_pred EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 245 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
+..++ +|.+.|+.++++|.+. +.++.+.|+.+++||+-+++ ...... .....+.+.|+|.|.+++.+..
T Consensus 120 ~~slK-~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr--------~a~v~~-L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 120 LKSLK-AHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR--------VAFVLN-LKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred eeeec-ccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc--------cceeec-cCCcceeeEEcCCCCEEEEEec
Confidence 99999 8999999999999554 88899999999999997776 111111 2233355999999999988876
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
++ |-+|.+.+.+.. ..+. ....+.|+.|. +..|++|..|+.|++||..+. .+...+
T Consensus 189 ~~-i~i~q~d~A~v~-------------~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~--------~~~~~~ 245 (362)
T KOG0294|consen 189 NK-IDIYQLDNASVF-------------REIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSD--------TPLTEF 245 (362)
T ss_pred cE-EEEEecccHhHh-------------hhhh-ccccceeeeecCCceEEEecCCceEEEeccCCC--------ccceee
Confidence 54 889998875533 1111 22456777776 669999999999999998863 788889
Q ss_pred cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 404 EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.+|...|.++.+-.+.. +.+|+|+|.||.|++||++
T Consensus 246 ~AH~~RVK~i~~~~~~~-----------~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPE-----------HEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ecchhheeeeEEEecCC-----------ceEEEEeccCceEEEEEcc
Confidence 99999999998655432 2299999999999999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=217.14 Aligned_cols=256 Identities=20% Similarity=0.284 Sum_probs=206.4
Q ss_pred ceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceE
Q 041325 119 ANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196 (450)
Q Consensus 119 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (450)
....+..|++.|.+++.+|+. ++||+.|..-.+|++.++.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-------------------------------------- 97 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-------------------------------------- 97 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--------------------------------------
Confidence 345578999999999999866 8999999999999999983
Q ss_pred EEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 197 QVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 197 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
....+.+|.+.|+++.|+.+|.+||+|+.+|.|+||+..++.....+. .....+.=+.|+| ...+|++|+.||
T Consensus 98 -----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp-~a~illAG~~DG 170 (399)
T KOG0296|consen 98 -----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHP-RAHILLAGSTDG 170 (399)
T ss_pred -----ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecc-cccEEEeecCCC
Confidence 122344799999999999999999999999999999999998888876 5667788899999 555899999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee------
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV------ 350 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~------ 350 (450)
.+-+|.+.++. ..+.+.+|+.++++=.|.|+|+.++++..||+|++|++.+++++...........
T Consensus 171 svWmw~ip~~~--------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~ 242 (399)
T KOG0296|consen 171 SVWMWQIPSQA--------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN 242 (399)
T ss_pred cEEEEECCCcc--------eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc
Confidence 99999997644 6778889999999999999999999999999999999999988766552110000
Q ss_pred ------------------------eecc--------ccCCccceEEEEEe---CC--eEEEEeCCCeEEEeeCCCCcccc
Q 041325 351 ------------------------LKGA--------LRGHTKAILCLAVV---SN--LLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 351 ------------------------~~~~--------~~~~~~~v~~~~~~---~~--~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
.... ...+...+.|+.+. .. +.|+|+.||+|.|||+..
T Consensus 243 ~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~----- 317 (399)
T KOG0296|consen 243 LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA----- 317 (399)
T ss_pred cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-----
Confidence 0000 01222223333333 22 789999999999999986
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..++..-.|..+|+.+.|.+ .. +|++++.||.|+.||.|
T Consensus 318 ----~~~R~~c~he~~V~~l~w~~-t~-------------~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 318 ----STLRHICEHEDGVTKLKWLN-TD-------------YLLTACANGKVRQWDAR 356 (399)
T ss_pred ----chhheeccCCCceEEEEEcC-cc-------------hheeeccCceEEeeecc
Confidence 34455556899999999999 55 89999999999999976
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=227.28 Aligned_cols=286 Identities=22% Similarity=0.297 Sum_probs=231.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.....+. .|.+.|..+.| +...|++|+.|..|++|+....+.... ..+.|..++|+.+.|.+++
T Consensus 166 ~~~~~ld--~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----------~tLaGs~g~it~~d~d~~~~~ 233 (459)
T KOG0288|consen 166 RALFVLD--AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI----------STLAGSLGNITSIDFDSDNKH 233 (459)
T ss_pred hhhhhhh--ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh----------hhhhccCCCcceeeecCCCce
Confidence 4555666 99999999999 569999999999999999987762221 1266888899999998665
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.|+.+++|+++.. ....++.+|.+.|+++.|.
T Consensus 234 ~iAas~d~~~r~Wnvd~~-------------------------------------------r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSL-------------------------------------------RLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred EEeecCCCceeeeeccch-------------------------------------------hhhhhhcccccceeeehhh
Confidence 999999999999999987 2233455899999999998
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.....+++|+.|.+|++||+....|..++. ....+..|... ...+++|..|+.|++||.+... +...
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~--------~~~s 337 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSAD--------KTRS 337 (459)
T ss_pred ccccceeeccccchhhhhhhhhhheecccc--ccccccceEec---ceeeeecccccceEEEeccCCc--------eeeE
Confidence 877779999999999999999998888876 55677788775 3478999999999999998776 5555
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~ 377 (450)
...+ +.|+++..++++..|++++.|.++.+.|+++.+....+... ....+|. .+.+.|+| .|+++||.
T Consensus 338 v~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-------g~k~asD--wtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 338 VPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-------GFKCASD--WTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred eecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc-------ccccccc--cceeEECCCCceeeeccC
Confidence 5544 58999999999999999999999999999987654221111 1122233 56666764 59999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCc--ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR--PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
||.|+||++.++ ++...+..... .|++++|+|.|. .|++++.++.+.+|.
T Consensus 408 dgsv~iW~v~tg--------KlE~~l~~s~s~~aI~s~~W~~sG~-------------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 408 DGSVYIWSVFTG--------KLEKVLSLSTSNAAITSLSWNPSGS-------------GLLSADKQKAVTLWT 459 (459)
T ss_pred CCcEEEEEccCc--------eEEEEeccCCCCcceEEEEEcCCCc-------------hhhcccCCcceEecC
Confidence 999999999985 66666655544 499999999999 899999999999994
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=216.09 Aligned_cols=279 Identities=20% Similarity=0.284 Sum_probs=234.5
Q ss_pred cceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEE
Q 041325 76 SYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 151 (450)
..|+++... ...++||+.|..+.++|...++.+.+ +.||...|+.+.++++. +++++.|-.|++
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~------------~~Gh~kki~~v~~~~~~~~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILAT------------LKGHTKKITSVKFHKDLDTVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhh------------ccCcceEEEEEEeccchhheeecCCcceEEe
Confidence 467777773 48999999999999999999988777 88999999999999887 999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
|....... ......|..+|+.+..+|.|+||++++.|
T Consensus 288 ws~~~~s~-------------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d 324 (506)
T KOG0289|consen 288 WSVPLSSE-------------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASND 324 (506)
T ss_pred eccccccC-------------------------------------------ccccccccccceeeeeccCCcEEEEecCC
Confidence 99876621 11233599999999999999999999999
Q ss_pred CcEEEEecCCCeEEEEeecc-cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 232 RTFKIWRTSDFRCLESVKNA-HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
++..+.|++++..+...... ..-.+++.+|+| ++.+|.+|..||.|++||+..+. .+..|.+|.++|..+
T Consensus 325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~--------~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT--------NVAKFPGHTGPVKAI 395 (506)
T ss_pred ceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--------ccccCCCCCCceeEE
Confidence 99999999999998887632 234689999998 44489999999999999997665 788899999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCC
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 388 (450)
+|+.+|.+|++++.|+.|++||++..+... ...+ .....+.++.|+ |.+|+.++.|=.|++++-.
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~k-----------t~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~- 462 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFK-----------TIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK- 462 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccc-----------eeec-cccccceeEEEcCCCCeEEeecceeEEEEEecc-
Confidence 999999999999999999999999765331 1111 122367788887 7799999888666666644
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+.|.++..+..|.+..+++.|....+ +++++|.|..++++.+
T Consensus 463 -----~k~W~~~~~~~~~sg~st~v~Fg~~aq-------------~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 463 -----TKSWTEIKELADHSGLSTGVRFGEHAQ-------------YLASTSMDAILRLYAL 505 (506)
T ss_pred -----cccceeeehhhhcccccceeeecccce-------------EEeeccchhheEEeec
Confidence 446889999999999999999999988 9999999999999875
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-30 Score=224.97 Aligned_cols=275 Identities=30% Similarity=0.500 Sum_probs=220.6
Q ss_pred CcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE
Q 041325 11 CRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL 88 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l 88 (450)
..++..+.|+|+...+.....+..+.. +...+.+....+. +|...+.++.| ++++|
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i--------------------~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKV--------------------WDLETGELLRTLK--GHTGPVRDVAASADGTYL 66 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEE--------------------EEeeCCCcEEEEe--cCCcceeEEEECCCCCEE
Confidence 456778888888777766654444432 2222333556666 89999999999 67899
Q ss_pred EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccC
Q 041325 89 YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 89 ~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~ 166 (450)
++++.||.|++|++.+++.... +..|...|.++.|+++. +++++.||.|++||+.+...
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------- 127 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVRT------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC------- 127 (289)
T ss_pred EEEcCCCeEEEEEcCcccceEE------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-------
Confidence 9999999999999988654443 56788899999999864 66666699999999986521
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE 246 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 246 (450)
. ..+..|...+.+++|+|++.++++++.|+.|++||+++++.+.
T Consensus 128 ---------~---------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 128 ---------L---------------------------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred ---------E---------------------------EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 1 1222577789999999999999888889999999999888888
Q ss_pred EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC
Q 041325 247 SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR 326 (450)
Q Consensus 247 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg 326 (450)
.+. .+...+.++.|+|++ ..+++++.++.|++||++.++ ....+..|...+.+++|+|++.++++++.||
T Consensus 172 ~~~-~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 172 TLT-GHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK--------CLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred eEe-cCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc--------eecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 887 788899999999844 377888889999999997655 5566667888999999999988999888899
Q ss_pred cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEee
Q 041325 327 SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWR 385 (450)
Q Consensus 327 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd 385 (450)
.|++||+.+++.. ..+..|...|.++.|++ +++++++.||.|++|+
T Consensus 242 ~i~i~~~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECV-------------QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeE-------------EEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999876644 44557888999999986 5999999999999996
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=223.57 Aligned_cols=270 Identities=23% Similarity=0.305 Sum_probs=217.6
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCC
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~d 146 (450)
-|.+.|+.+.+ +...+|+++..+.|.|||..+..-..... ....+.+.+.+|...-.+|+|++.. |++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~--~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS--GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc--ccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 69999999999 78999999999999999987654332211 1345566789999888999998554 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
++|++||+...... . . ...+...+.+|.+.|..++|++ +..+|
T Consensus 200 ~~i~lwdi~~~~~~---------~------~---------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 200 HTICLWDINAESKE---------D------K---------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLF 243 (422)
T ss_pred CcEEEEeccccccC---------C------c---------------------cccceEEeecCCcceehhhccccchhhh
Confidence 99999999876210 0 0 0123345668999999999999 67889
Q ss_pred EEEeCCCcEEEEecCC--CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 226 YSTSWDRTFKIWRTSD--FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
++++.|+.+.|||+++ .++..... +|...|+|++|+|.++.+||+|+.|++|++||+|+-. ..+..+.+|
T Consensus 244 ~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------~~lh~~e~H 315 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------KPLHTFEGH 315 (422)
T ss_pred eeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------cCceeccCC
Confidence 9999999999999994 44555555 8999999999999999899999999999999998755 278889999
Q ss_pred ccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceee-eCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCC
Q 041325 304 KSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIV-DGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSD 378 (450)
Q Consensus 304 ~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~d 378 (450)
+..|..+.|+|+ ...|++++.|+.+.|||+..-.... ......+...+...-.||...|..++|+++ .|++.+.|
T Consensus 316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 999999999994 5688999999999999997422111 122334455566778899999999999976 89999999
Q ss_pred CeEEEeeCCC
Q 041325 379 NTIRIWRRSS 388 (450)
Q Consensus 379 g~v~iwd~~~ 388 (450)
+.+.||+...
T Consensus 396 N~LqIW~~s~ 405 (422)
T KOG0264|consen 396 NILQIWQMAE 405 (422)
T ss_pred ceEEEeeccc
Confidence 9999999874
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=219.75 Aligned_cols=273 Identities=22% Similarity=0.333 Sum_probs=221.7
Q ss_pred CCCcceEEEEEe---C-CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAIA---G-KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~d---~-~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
...+.|++++|+ . ++.+|+| -.|.|++..+...... +.-....|.++.|..|+ |++|+..
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~------------~srFk~~v~s~~fR~DG~LlaaGD~s 89 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKT------------FSRFKDVVYSVDFRSDGRLLAAGDES 89 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhh------------HHhhccceeEEEeecCCeEEEccCCc
Confidence 455789999994 3 4444554 4799999888776554 33445689999998666 8888889
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
|.|+++|+.+. .....+.+|+.+|..+.|+| ++..+
T Consensus 90 G~V~vfD~k~r-------------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 90 GHVKVFDMKSR-------------------------------------------VILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred CcEEEeccccH-------------------------------------------HHHHHHhhccCceeEEEecccCCeEE
Confidence 99999996553 22334557999999999999 66778
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
++|++|+.+++||+.+...+..+. +|++.|.+.+|+|..+.++++|+.||.|++||++... ..+.++ .|..
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-------~~v~el-nhg~ 197 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-------SRVVEL-NHGC 197 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-------ceeEEe-cCCC
Confidence 889999999999999988755666 9999999999999888899999999999999997652 134444 4899
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEE
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRI 383 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~i 383 (450)
+|.++.+-|.|..|++++ ...|+|||+.+|... ...+..|...|+|+.+.. ..|++|+-|+.|++
T Consensus 198 pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ql------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 198 PVESVLALPSGSLIASAG-GNSVKVWDLTTGGQL------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred ceeeEEEcCCCCEEEEcC-CCeEEEEEecCCcee------------hhhhhcccceEEEEEeecCCceEeecccccceEE
Confidence 999999999999999887 467999999976543 244555999999999985 59999999999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
||+.+ ++.+..+. ..++|.+++.+|+++ .++.|..||.+.+
T Consensus 265 fd~t~--------~Kvv~s~~-~~~pvLsiavs~dd~-------------t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 265 FDTTN--------YKVVHSWK-YPGPVLSIAVSPDDQ-------------TVVIGMSNGLVSI 305 (487)
T ss_pred EEccc--------eEEEEeee-cccceeeEEecCCCc-------------eEEEecccceeee
Confidence 99765 57777765 678999999999998 8999999998764
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-28 Score=188.29 Aligned_cols=314 Identities=19% Similarity=0.216 Sum_probs=239.0
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeee---cCCCCcceeEEecCCCceEE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITS---TDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~ 132 (450)
...+.++++.+|+ ....|++++| .|.+.+.|+...+.||.....-.-..... ...+...-..-..|.+.|.|
T Consensus 18 ~~k~~f~~i~~l~---dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 18 KEKKHFEAINILE---DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred ccccceEEEEEec---chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEE
Confidence 3445567777775 7789999999 79999999999999988654322111111 11111111223478999999
Q ss_pred EEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 133 LVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 133 l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
.+|++.+ +++|+.|++|++..++..++ ..+- ....+.-|.
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~----------------~~~g----------------------~dle~nmhd 136 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTC----------------NATG----------------------HDLEFNMHD 136 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccc----------------cccC----------------------cceeeeecC
Confidence 9999887 99999999999998887632 1111 123445699
Q ss_pred CceEEEEEcc----CCCEEEEEe-CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 211 DTVSALALSS----DGSLLYSTS-WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 211 ~~v~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
+.|..++|-. .+.+|++++ .|..|.+-|...++..+.+. +|.+.|.++--- ++-++++|+.|.+|++||++-
T Consensus 137 gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilalysw--n~~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 137 GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILALYSW--NGAMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEEEEe--cCcEEEccCCCceEEEEeeec
Confidence 9999999965 355677665 57788888999999999988 899999887533 466899999999999999976
Q ss_pred hhhhccccchhhhhHhh---cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 286 AALQVNKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
..+... +-..+.+ ..+.|.+++..|.|++|++|..|....+||++.++.+ +.+..|...|
T Consensus 214 ~~~v~~----l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i-------------q~f~phsadi 276 (350)
T KOG0641|consen 214 NSCVNT----LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI-------------QRFHPHSADI 276 (350)
T ss_pred cceeee----ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee-------------eeeCCCccce
Confidence 552110 1111111 2367999999999999999999999999999998865 7888999999
Q ss_pred EEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 363 LCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 363 ~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
.|+.|++. ++++|+.|..|++-|++.... ..-.......|...+..+.|+|..- -+++.+.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla----~el~~~vv~ehkdk~i~~rwh~~d~-------------sfisssa 339 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA----HELPIMVVAEHKDKAIQCRWHPQDF-------------SFISSSA 339 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchh----hcCceEEEEeccCceEEEEecCccc-------------eeeeccC
Confidence 99999976 999999999999999985421 1234455667999999999999988 7999999
Q ss_pred CCcEEEEEe
Q 041325 441 DCEIKIWQI 449 (450)
Q Consensus 441 Dg~i~iw~l 449 (450)
|.++.+|-+
T Consensus 340 dkt~tlwa~ 348 (350)
T KOG0641|consen 340 DKTATLWAL 348 (350)
T ss_pred cceEEEecc
Confidence 999999975
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=240.01 Aligned_cols=312 Identities=20% Similarity=0.279 Sum_probs=229.4
Q ss_pred CCCcceEEEEE--eCCEEEEee--CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGS--SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
.++..|.++.. ||..+|||+ .||.++||+.+.-..........-.........|.+.|+|+.|++|+ ||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 44567899988 899999999 89999999876422111111111233445577899999999999888 9999999
Q ss_pred CeEEEEEcCCC--ceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 147 HKIRVWKIDNN--TSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 147 g~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
+.|.+|+.... ...+-...+... .-.......+.+|...|..++|+|++.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~---------------------------vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKN---------------------------VESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred ceEEEeeecccCCcccccccccccc---------------------------cceeeEEEEEecCCCccceeccCCCccE
Confidence 99999998741 000000000000 1122344566789999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 225 LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
|++++.|++|.|||..+++.+..+. +|.+.|..+.|.|.+. +|++-+.|++|++|++.+-... ........-....
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLT 219 (942)
T ss_pred EEEecccceEEEEccccceeeeeee-cccccccceEECCccC-eeeeecCCceEEEEEcccceee--EeeccchhhCCCc
Confidence 9999999999999999999888888 9999999999999554 9999999999999996442210 0000001111233
Q ss_pred cceEEEEEcCCCCEEEEeeC----CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-------C---
Q 041325 305 SAVTALALSTDGTVLYSGAC----DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-------N--- 370 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~--- 370 (450)
.-+..+.|+|||++|++... -..+.|.+-.+-+ ....+.+|.+++.++.|++ +
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk-------------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK-------------VDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCce-------------eeeeeecCCCceEEEEeChHHhccccccCC
Confidence 45789999999999998753 2356676654433 3467889999999999973 1
Q ss_pred ---------eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe-cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 371 ---------LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL-EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 371 ---------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
.+|+|+.|++|.||..... +++... .-....|.+++|+|||. .|+.+|.
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~--------RPl~vi~~lf~~SI~DmsWspdG~-------------~LfacS~ 345 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALP--------RPLFVIHNLFNKSIVDMSWSPDGF-------------SLFACSL 345 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCC--------CchhhhhhhhcCceeeeeEcCCCC-------------eEEEEec
Confidence 5789999999999998652 333222 33467899999999999 8999999
Q ss_pred CCcEEEEEe
Q 041325 441 DCEIKIWQI 449 (450)
Q Consensus 441 Dg~i~iw~l 449 (450)
||+|.+..+
T Consensus 346 DGtV~~i~F 354 (942)
T KOG0973|consen 346 DGTVALIHF 354 (942)
T ss_pred CCeEEEEEc
Confidence 999998876
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=226.13 Aligned_cols=264 Identities=23% Similarity=0.356 Sum_probs=218.7
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
..+.||.|.. ..|++|+..++..... ...+...|+++.|++++ |++|..+|.|.|||..+..
T Consensus 187 s~n~laValg-~~vylW~~~s~~v~~l------------~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--- 250 (484)
T KOG0305|consen 187 SANVLAVALG-QSVYLWSASSGSVTEL------------CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--- 250 (484)
T ss_pred cCCeEEEEec-ceEEEEecCCCceEEe------------EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc---
Confidence 3567777764 6899999999886655 33347899999999766 9999999999999998772
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec-CCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH-HVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
....+.+ |...|-+++|. +..+.+|+.|+.|..+|++
T Consensus 251 ----------------------------------------~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 251 ----------------------------------------KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred ----------------------------------------ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 2222334 88999999998 6789999999999999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEE
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVL 319 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l 319 (450)
..+.......+|...|..+.|+++ ..++++|+.|+.+.|||....+ +...+..|...|..++|+| ...+|
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~--------p~~~~~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPE--------PKFTFTEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCcc--------ccEEEeccceeeeEeeeCCCccCce
Confidence 887666633389999999999984 4499999999999999985544 7788889999999999999 56788
Q ss_pred EEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCe--EEE--EeCCCeEEEeeCCCCcccc
Q 041325 320 YSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL--LFS--GSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 320 ~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~s--~~~dg~v~iwd~~~~~~~~ 393 (450)
|+|+ .|+.|++||..+++.+ ........|..+.|+..+ |++ |..++.|.||++.+
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~i--------------~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps----- 420 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGARI--------------DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS----- 420 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcEe--------------cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----
Confidence 8865 5999999999998765 223345789999999652 333 44577899999987
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+.+..+.+|...|..++++||+. .+++|+.|.++++|++
T Consensus 421 ---~~~~~~l~gH~~RVl~la~SPdg~-------------~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 421 ---MKLVAELLGHTSRVLYLALSPDGE-------------TIVTGAADETLRFWNL 460 (484)
T ss_pred ---cceeeeecCCcceeEEEEECCCCC-------------EEEEecccCcEEeccc
Confidence 478899999999999999999999 9999999999999986
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=198.58 Aligned_cols=284 Identities=19% Similarity=0.309 Sum_probs=214.7
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCe
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDK 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~ 139 (450)
++.+.|+ .-...|.++.| +|.+|++++.|.++++||..+++.+.. ...+.-.|..++|. +..
T Consensus 5 ~~ak~f~--~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t------------i~skkyG~~~~~Fth~~~~ 70 (311)
T KOG1446|consen 5 RPAKVFR--ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT------------INSKKYGVDLACFTHHSNT 70 (311)
T ss_pred ccccccc--cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE------------eecccccccEEEEecCCce
Confidence 4445565 56788999999 799999999999999999999998877 33444566667775 344
Q ss_pred EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
++.++. |.+||..++.+. +.+..++ +|...|++++
T Consensus 71 ~i~sStk~d~tIryLsl~dN----------------kylRYF~---------------------------GH~~~V~sL~ 107 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDN----------------KYLRYFP---------------------------GHKKRVNSLS 107 (311)
T ss_pred EEEccCCCCCceEEEEeecC----------------ceEEEcC---------------------------CCCceEEEEE
Confidence 665555 889999999988 4444444 8999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
.+|-++.+++++.|++|++||++..++...+. ...-..+++.| .+-++|++...+.|++||++.-.. ......
T Consensus 108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dk---gPF~tf 180 (311)
T KOG1446|consen 108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDK---GPFTTF 180 (311)
T ss_pred ecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCC---CCceeE
Confidence 99988999999999999999999888887775 23335567887 333677777777999999987531 111111
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce---EEEEEe--CCeE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI---LCLAVV--SNLL 372 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~--~~~l 372 (450)
..........+.|.|+|||++|+.++..+.+++.|.-+|.... .+..+...- ....|. ++++
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-------------tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-------------TFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-------------eEeeccCCCCcceeEEECCCCcEE
Confidence 1111456788999999999999999999999999999887552 222222111 344454 5699
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
++|+.||+|.+|+++++ ..+..+.+ +.+++.++.|.|... +++|++ ..+-+|
T Consensus 248 l~gs~dg~i~vw~~~tg--------~~v~~~~~~~~~~~~~~~fnP~~~-------------mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETG--------KKVAVLRGPNGGPVSCVRFNPRYA-------------MFVSAS--SNLVFW 300 (311)
T ss_pred EEecCCCcEEEEEcCCC--------cEeeEecCCCCCCccccccCCcee-------------eeeecC--ceEEEE
Confidence 99999999999999986 66777777 799999999999866 666664 456666
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=224.36 Aligned_cols=361 Identities=21% Similarity=0.262 Sum_probs=252.4
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEE-----eCCEEEEeeCCCcEEEecCCCCCcee----eee---------------
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAI-----AGKLLYGGSSNGEIRAWNRDPNNYVN----ITS--------------- 112 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~-----d~~~l~tgs~dg~v~vw~~~~~~~~~----~~~--------------- 112 (450)
.++....+..+...+.||.++|.+++| +.-+||++|.|..||||.+.-+.... ...
T Consensus 173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 333334445555555599999999999 35689999999999999875333111 000
Q ss_pred cCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEe--ccCcccccceeeeeeccCCCcceeE
Q 041325 113 TDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYS--TSGKLKNKYYERIATLPTLNDRFTK 188 (450)
Q Consensus 113 ~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (450)
......-...+.||.+.|.++.|.|.. |++++.|.++.+|.-++....... ..+.......-....+-..+....+
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence 000000112356999999999999888 999999999999998877443221 1122111111111111111222233
Q ss_pred eeecCceEEEee-------cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe----EEEEeecccccceE
Q 041325 189 CFLANNYVQVRR-------HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR----CLESVKNAHDDAIN 257 (450)
Q Consensus 189 ~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~ 257 (450)
+....+...+++ .......+|.+.|.+++|+|.|.+|++.+.|.+-|++-.-..+ .+..-+ .|...++
T Consensus 333 ~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-iHGyDl~ 411 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ-IHGYDLT 411 (764)
T ss_pred EecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc-cccccce
Confidence 333333444444 2233467899999999999999999999999999998654211 222222 5788899
Q ss_pred EEEEeecCCcEEEEEcCCCcEEEEeCcchhhh------------------------------------------------
Q 041325 258 AIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ------------------------------------------------ 289 (450)
Q Consensus 258 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------------------------------ 289 (450)
|+++.+. +..+++|...+.+|+|+....-..
T Consensus 412 c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 412 CLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 9999863 657899999999999975432110
Q ss_pred --------------------ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCC
Q 041325 290 --------------------VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDD 344 (450)
Q Consensus 290 --------------------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~ 344 (450)
...-++.++++.+|...|.+++.+|+++++++++.. ..|++|+..+-..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~------ 564 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ------ 564 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh------
Confidence 001123455667899999999999999999999864 3589999886543
Q ss_pred CCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCC
Q 041325 345 DSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 422 (450)
...+.+|.-.|+.++|+++ +|++.+.|+++.+|........ .......+.|+.-|.+..|+|++.
T Consensus 565 -------~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~----e~~fa~~k~HtRIIWdcsW~pde~-- 631 (764)
T KOG1063|consen 565 -------VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD----EFRFACLKAHTRIIWDCSWSPDEK-- 631 (764)
T ss_pred -------hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch----hhhhccccccceEEEEcccCcccc--
Confidence 3578999999999999955 9999999999999998654222 122444788999999999999999
Q ss_pred CCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 423 NRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++|+|.|.+|++|.+
T Consensus 632 -----------~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 632 -----------YFATASRDKKVKVWEE 647 (764)
T ss_pred -----------eeEEecCCceEEEEec
Confidence 8999999999999975
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-30 Score=202.82 Aligned_cols=263 Identities=20% Similarity=0.285 Sum_probs=207.4
Q ss_pred CCcceEEEEE---eCCEEEEeeCCCcEEEecCCCC-CceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC
Q 041325 74 NSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPN-NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH 147 (450)
Q Consensus 74 h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 147 (450)
-.+.|.+|+| ...++++||.||+||+|+++.. ..... ....|.++|.+++|+.++ +++|+.|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-----------a~~~~~~PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-----------AQQSHDGPVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch-----------hhhccCCCeEEEEEccCCceEEeeccCC
Confidence 3578999999 4778889999999999999873 32221 245789999999999777 99999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC--EE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS--LL 225 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l 225 (450)
.+++||+.+++. ..+..|.++|.++.|-+... .|
T Consensus 95 ~~k~wDL~S~Q~--------------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl 130 (347)
T KOG0647|consen 95 QAKLWDLASGQV--------------------------------------------SQVAAHDAPVKTCHWVPGMNYQCL 130 (347)
T ss_pred ceEEEEccCCCe--------------------------------------------eeeeecccceeEEEEecCCCccee
Confidence 999999999843 12335999999999987554 89
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
++|+.|.+|+.||.+...++..+. ..+.+.++..- ..+++++..+..|.+|+++++..+. .......+-
T Consensus 131 ~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~------k~~~SpLk~ 199 (347)
T KOG0647|consen 131 VTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEF------KRIESPLKW 199 (347)
T ss_pred EecccccceeecccCCCCeeeeee--ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchh------hhhcCcccc
Confidence 999999999999999999999886 67788888775 3488999999999999997765211 111112345
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC---------ccceEEEEEeCC--eEEE
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH---------TKAILCLAVVSN--LLFS 374 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~--~l~s 374 (450)
.++|++..+|.+..+.|+-+|.+.|..+..+... ....++.| -..|.+++|++. .|+|
T Consensus 200 Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~-----------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 200 QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK-----------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred eeeEEEEEecCCceEeeeecceEEEEecCCCCcc-----------CceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 6899999998888899999999999998875321 11122222 246788999975 8999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
++.||+..+||-.. ...+...+.|..+|++..|+.+|..
T Consensus 269 aGsDGtf~FWDkda--------r~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDA--------RTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred ecCCceEEEecchh--------hhhhhccCcCCCccceeEecCCCCE
Confidence 99999999999775 2556677789999999999999993
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=213.31 Aligned_cols=293 Identities=22% Similarity=0.322 Sum_probs=229.3
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCce-eeeecC-----CCCcceeEEecCCCceEEEEEeC
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYV-NITSTD-----VGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~-~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
.+.+. .|.-+|+||++ |+.+.++++.||+|.=|++.+++.. ...... ........-.+|...+.+++.++
T Consensus 135 ~~~~~--~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIG--KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeec--cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 44555 89999999999 7999999999999999999988744 121111 00000000138999999999998
Q ss_pred Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 138 DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 138 ~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
|+ |++|+.|..|.||+.++.+ ....+.+|.+.|.+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~e-------------------------------------------hv~~~~ghr~~V~~ 249 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLE-------------------------------------------HVKVFKGHRGAVSS 249 (479)
T ss_pred CCcEEEecCCCceEEEecCcccc-------------------------------------------hhhcccccccceee
Confidence 87 9999999999999999882 22234589999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
++|-.....+++++.|+.|++|+++....+.++. +|.+.|..|.... ....+-+|+.|.++++|++...
T Consensus 250 L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ee--------- 318 (479)
T KOG0299|consen 250 LAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEE--------- 318 (479)
T ss_pred eeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeechhc-ccceEEeccccceeEEEecccc---------
Confidence 9999988889999999999999999988888887 8999999998874 3335666669999999998433
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLF 373 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 373 (450)
....+.++.+.+-|++|- +...+++|+.||.|.+|++...++++......+..... ....++.+|++++.. .++++
T Consensus 319 sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~-~~~~~~~Witsla~i~~sdL~a 396 (479)
T KOG0299|consen 319 SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL-DPVNGNFWITSLAVIPGSDLLA 396 (479)
T ss_pred ceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCc-cccccccceeeeEecccCceEE
Confidence 234556778899999998 45789999999999999999999886554443322211 112334689999887 45999
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
+|+.+|.|++|.+..+ .....++..+. -.+-|++|+|+++++.
T Consensus 397 sGS~~G~vrLW~i~~g----~r~i~~l~~ls-~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 397 SGSWSGCVRLWKIEDG----LRAINLLYSLS-LVGFVNSLAFSNSGKR 439 (479)
T ss_pred ecCCCCceEEEEecCC----ccccceeeecc-cccEEEEEEEccCCCE
Confidence 9999999999999986 44566677766 6788999999999983
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=217.18 Aligned_cols=324 Identities=15% Similarity=0.259 Sum_probs=237.3
Q ss_pred eeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---
Q 041325 65 CSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--- 139 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--- 139 (450)
+-..++ ||.+.|+|++. .|.+|++|+.||+||||.+.++.++..... .+.|.|++|+|..
T Consensus 392 ~~lvyr--GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-------------d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 392 CALVYR--GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-------------DSEIRSVAWNPLSDLC 456 (733)
T ss_pred eeeeEe--ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-------------cceeEEEEecCCCCce
Confidence 444455 99999999999 599999999999999999999999887333 2489999999766
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcc--eeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDR--FTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
+++++....+.+-+-.-+........ .+.+...+..... ..+.+......+ .....+....|...|..+.
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t-------~ell~~~~~~~~p~~~~~~W~~~~~~e-~~~~v~~~I~~~k~i~~vt 528 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPT-------KELLASAPNESEPDAAVVTWSRASLDE-LEKGVCIVIKHPKSIRQVT 528 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcch-------hhhhhcCCCccCCcccceeechhhhhh-hccceEEEEecCCccceee
Confidence 55555555577766544421111000 0111111111110 111111110000 1112445567999999999
Q ss_pred EccCCCEEEEEeC---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 218 LSSDGSLLYSTSW---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 218 ~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
|+..|+||++..- ...|.|+++...+....|. ...+.|.++.|+|... +|++++. ..|++||+....
T Consensus 529 WHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqe------- 598 (733)
T KOG0650|consen 529 WHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQE------- 598 (733)
T ss_pred eecCCceEEEeccCCCcceEEEEecccccccCchh-hcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHH-------
Confidence 9999999999765 3568899998887777776 5678899999999665 5666655 579999997655
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 372 (450)
+++.+......|..++.+|.|..|+.|+.|+.+..||+.-+.. +...+..|...+++++|++. ++
T Consensus 599 -lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk------------Pyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 599 -LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK------------PYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred -HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc------------hhHHhhhhhhhhhhhhhcccccee
Confidence 7888887888999999999999999999999999999985432 33678889999999999977 89
Q ss_pred EEEeCCCeEEEeeCCCC-ccccCCCceeEEEecCCCcc----eEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 373 FSGSSDNTIRIWRRSSS-VTDHQKGYSCLAVLEGHRRP----VKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
++|+.||++.|+.-.-- ....+.-..++..+.+|... |..+.|+|... +|++++.||+|++|
T Consensus 666 as~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-------------WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-------------WLFSAGADGTIRLF 732 (733)
T ss_pred eeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-------------eEEecCCCceEEee
Confidence 99999999998842210 00112235678889999876 99999999999 99999999999999
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=215.62 Aligned_cols=263 Identities=15% Similarity=0.257 Sum_probs=213.7
Q ss_pred EecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
...|.+.|+.+.+.|.. +++.+..+.|.|||............ .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------------------------------~ 166 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------------------------------E 166 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------------------------------c
Confidence 45789999999998766 77788899999999987632110000 1
Q ss_pred ecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeE-------EEEeecccccceEEEEEeecCCcEEEE
Q 041325 200 RHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRC-------LESVKNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
-.+...+.+|.+.-.+++|++ ..-.|++++.|+.|++||+..... ...+. .|...|..++|++....++++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhhee
Confidence 123446678988888899999 445789999999999999975432 23334 899999999999999989999
Q ss_pred EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee
Q 041325 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 350 (450)
++.|+.+.|||+|++. .++.....+|.+.|.|++|+| ++..||+|+.|++|.+||+++.+.
T Consensus 246 v~dd~~L~iwD~R~~~------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------ 307 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNT------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------ 307 (422)
T ss_pred ecCCCeEEEEEcCCCC------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------
Confidence 9999999999998521 125667788999999999999 677899999999999999997643
Q ss_pred eeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccc------cCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 351 LKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTD------HQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
....+.+|...|.++.|+++ .|++++.|+.+.+||+..-... ...+.+++..-.||...|..+.|+|+...
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 44788999999999999975 8999999999999999754322 13455677888999999999999999986
Q ss_pred CCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 422 SNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+|.++|+.+.||++
T Consensus 388 ------------~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 388 ------------TIASVAEDNILQIWQM 403 (422)
T ss_pred ------------EEEEecCCceEEEeec
Confidence 8999999999999986
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=217.79 Aligned_cols=305 Identities=14% Similarity=0.258 Sum_probs=220.1
Q ss_pred EEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 68 TLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 68 ~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
-+++.+|+..|.++++ .|-+|++|+.|.+|++||+............ ........|.+++|++.+ |++.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~-------l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ-------LQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc-------cCcccccccceeeecCCCCeEEEE
Confidence 3444499999999999 5999999999999999999876533221000 011233489999999655 7777
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DG 222 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 222 (450)
+..-..+++|-+..+...+....+ ++ .....-.+|...++|.+|+| +.
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQ---------------------------YI----~Dm~nTKGHia~lt~g~whP~~k 281 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQ---------------------------YI----RDMYNTKGHIAELTCGCWHPDNK 281 (641)
T ss_pred ecCcceeEEccCCceeeeeeccch---------------------------hh----hhhhccCCceeeeeccccccCcc
Confidence 777889999987764332222211 10 11112347999999999999 55
Q ss_pred CEEEEEeCCCcEEEEecCCCeEE-EEee----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCL-ESVK----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
..+++++.||+++|||++..+.. ..+. .+..-+++.++|++++. .|++|+.||.|.+|+...... ....
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-----~p~~ 355 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-----RPVM 355 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCccc-----ccce
Confidence 67999999999999999875432 2232 13345789999999555 799999999999999754321 1122
Q ss_pred hhHhhccc--ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE
Q 041325 298 QTLEKHKS--AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF 373 (450)
Q Consensus 298 ~~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 373 (450)
..-.+|.. .|+||.|++||++|++-+.|+++++||++..+..+. ...-.....+-+.++|+++ +|+
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~----------~~tgL~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN----------VRTGLPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh----------hhcCCCccCCCCccccCCCceEEE
Confidence 33345666 899999999999999999999999999997653210 0111112233466777765 777
Q ss_pred EEeC------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 374 SGSS------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 374 s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+|.. .|.+.+||..+ +..+..+.-....|..+.|+|.-+ .|+.|+.||.+++|
T Consensus 426 TGtS~~~~~~~g~L~f~d~~t--------~d~v~ki~i~~aSvv~~~WhpkLN-------------Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 426 TGTSAPNGMTAGTLFFFDRMT--------LDTVYKIDISTASVVRCLWHPKLN-------------QIFAGSGDGTAHVY 484 (641)
T ss_pred ecccccCCCCCceEEEEeccc--------eeeEEEecCCCceEEEEeecchhh-------------heeeecCCCceEEE
Confidence 7763 57899999876 577787877788999999999988 89999999999986
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=224.92 Aligned_cols=288 Identities=13% Similarity=0.206 Sum_probs=197.5
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEEeCCEEEE------eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAIAGKLLYG------GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~t------gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
.+..+...+..-+++....-.-..++.+++++|. |+.+|.|++|+........ .+.+|.+.|
T Consensus 10 ~~~~~~~~~y~diri~~~~~~s~~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~------------~L~gH~~~V 77 (568)
T PTZ00420 10 LYPDPSNNLFDDLRICSRVIDSCGIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVI------------KLKGHTSSI 77 (568)
T ss_pred cCCchhhCeeccEEccccccCceeEeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEE------------EEcCCCCCE
Confidence 3333444444444432222222334445555553 5668889999876654333 377999999
Q ss_pred EEEEEeCC---eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 131 KSLVVLGD---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 131 ~~l~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
.+++|+|+ .|++|+.||+|++||+.+.... ...+ ......+.
T Consensus 78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~---------------~~~i--------------------~~p~~~L~ 122 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSEDLTIRVWEIPHNDES---------------VKEI--------------------KDPQCILK 122 (568)
T ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc---------------cccc--------------------ccceEEee
Confidence 99999975 3999999999999999864210 0000 01122345
Q ss_pred cCCCceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+|...|.+++|+|++.. +++++.|+.|++||+++++.+..+. +...|.+++|+|++. +|++++.|+.|++||++++
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC
Confidence 79999999999998875 5788999999999999998777765 567899999998544 8888999999999999877
Q ss_pred hhhccccchhhhhHhhcccceEE-----EEEcCCCCEEEEeeCCC----cEEEEEcCC-CceeeeCCCCCCceeeecccc
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTA-----LALSTDGTVLYSGACDR----SILVWERDQ-GNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~-----l~~~~~~~~l~~g~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+ .+..+.+|.+.+.. ..|++++++|++++.|+ .|++||++. .+++ ....+.
T Consensus 200 ~--------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl-----------~~~~ld 260 (568)
T PTZ00420 200 E--------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL-----------VTMSID 260 (568)
T ss_pred c--------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce-----------EEEEec
Confidence 6 55566777765433 34568889999987764 799999995 3322 111222
Q ss_pred CCccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 357 GHTKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 357 ~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
.+.+.+.. .|+ +.++++|+.|+.|++|++..+ ....+..+. +..++.+++|.|....
T Consensus 261 ~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~------~~~~l~~~~-s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 261 NASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLG------SIRKVNEYK-SCSPFRSFGFLPKQIC 320 (568)
T ss_pred CCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCC------cEEeecccc-cCCCccceEEcccccc
Confidence 33333222 233 448899999999999999764 122333333 6678889999998663
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-30 Score=223.75 Aligned_cols=251 Identities=25% Similarity=0.342 Sum_probs=212.4
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEec-CCCceEEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATG-NGDAVKSLVV 135 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~ 135 (450)
...+++...... -+...|+++.| +|.+||+|..+|.|.|||....+.... +.+ |...|-+++|
T Consensus 203 ~~~s~~v~~l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~------------~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 203 SASSGSVTELCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT------------LRGSHASRVGSLAW 268 (484)
T ss_pred ecCCCceEEeEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc------------ccCCcCceeEEEec
Confidence 444444444444 34899999999 799999999999999999988775555 445 9999999999
Q ss_pred eCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 136 LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 136 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
....+.+|+.|+.|..+|++..+.. ...+.+|...|..
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~------------------------------------------~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHV------------------------------------------VSTLQGHRQEVCG 306 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhh------------------------------------------hhhhhcccceeee
Confidence 9888999999999999999887320 0024579999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--CCCcEEEEeCcchhhhcccc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--ADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~ 293 (450)
++|++|+.++|+|+.|+.+.|||....++...+. .|...|.+++|+|...++||+|+ .|+.|++||..++.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~------ 379 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA------ 379 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc------
Confidence 9999999999999999999999998888888887 89999999999999999999875 59999999998776
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEe--eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSG--ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
.+.... ..+.|++|.|++..+-|+++ ..++.|.||+..+.+.+ ..+.+|...|..++++++
T Consensus 380 --~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-------------~~l~gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 380 --RIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-------------AELLGHTSRVLYLALSPDG 443 (484)
T ss_pred --Eecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee-------------eeecCCcceeEEEEECCCC
Confidence 555544 56899999999988777764 45778999999986644 789999999999999865
Q ss_pred -eEEEEeCCCeEEEeeCCC
Q 041325 371 -LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 371 -~l~s~~~dg~v~iwd~~~ 388 (450)
.+++|+.|.++++|++-.
T Consensus 444 ~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 444 ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CEEEEecccCcEEeccccC
Confidence 999999999999999875
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=224.16 Aligned_cols=277 Identities=16% Similarity=0.205 Sum_probs=198.0
Q ss_pred eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeec-CCCCcceeEEecCCCceEEEEEeC-Ce--EEEEeCCCeEEEEE
Q 041325 78 IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITST-DVGDHANVVATGNGDAVKSLVVLG-DK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 78 v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~dg~i~iw~ 153 (450)
+...++|+..+++++.+.....|+...+..+..... .........+.+|.+.|.+++|+| +. |++|+.|++|++||
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 445556878888888888888998766543222111 111112235789999999999997 43 99999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEEeCCC
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYSTSWDR 232 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 232 (450)
+....... . .......+.+|...|.+++|+|++ ++|++++.|+
T Consensus 105 i~~~~~~~----------------~--------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 105 IPEEGLTQ----------------N--------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred cCCCcccc----------------c--------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 97652100 0 001223455799999999999975 7999999999
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc-eEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA-VTALA 311 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~ 311 (450)
.|+|||+++++.+..+. .|...|.+++|+|+ ..+|++++.|+.|++||+++++ .+..+..|.+. ...+.
T Consensus 149 tVrIWDl~tg~~~~~l~-~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~--------~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIK-CHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGT--------IVSSVEAHASAKSQRCL 218 (493)
T ss_pred EEEEEECCCCeEEEEEc-CCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCc--------EEEEEecCCCCcceEEE
Confidence 99999999999888887 78899999999985 4589999999999999998766 45556667654 45678
Q ss_pred EcCCCCEEEEee----CCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEe--CCeEEEEe-CCCeEEE
Q 041325 312 LSTDGTVLYSGA----CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVV--SNLLFSGS-SDNTIRI 383 (450)
Q Consensus 312 ~~~~~~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~-~dg~v~i 383 (450)
|.+++..+++++ .|+.|++||+++..... ..... +...+....|+ +++|++++ .|+.|++
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~------------~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY------------STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce------------eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 888887777654 47899999998653211 11111 22334444555 45777776 5999999
Q ss_pred eeCCCCccccCCCceeEEEe-cCCCcceEEEEEEecCC
Q 041325 384 WRRSSSVTDHQKGYSCLAVL-EGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~ 420 (450)
||+.++ ...... ..+..++..++|.|...
T Consensus 287 wdl~~~--------~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 287 FELMNE--------RLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred EEeeCC--------ceEEEeeccCCCCCcceEeccccc
Confidence 999874 233322 22456788888888755
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.3e-31 Score=228.81 Aligned_cols=277 Identities=21% Similarity=0.386 Sum_probs=219.0
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
++++|+||+.||.|++|+.....-... ......+..|.+.|+.+....++ |++++.|-+|++|+......
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s------~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-- 107 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPS------TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-- 107 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcc------cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--
Confidence 578999999999999999865432111 11234477899999999987655 99999999999999987621
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE-ccCCCEEEEEeCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL-SSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
-|+ ..+..|.+.|.|+++ -++..++|+|+.|+.|.+||++
T Consensus 108 ------------~c~---------------------------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 108 ------------FCM---------------------------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred ------------hhH---------------------------hhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 111 233469999999999 7789999999999999999999
Q ss_pred CCe--EEEEe--------ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 241 DFR--CLESV--------KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 241 ~~~--~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
++. .+..+ ..++..+|++++.++.+ ..+++|+..+.+++||.++.+ .+..+.+|...|..+
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~--------kimkLrGHTdNVr~l 219 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK--------KIMKLRGHTDNVRVL 219 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc--------ceeeeeccccceEEE
Confidence 772 22222 23678899999998743 479999999999999998877 677788999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
..++||+.+++++.||+|++||+...+++ ..+..|...|+++..+++ .+.+|+.||.|..-|+++
T Consensus 220 l~~dDGt~~ls~sSDgtIrlWdLgqQrCl-------------~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 220 LVNDDGTRLLSASSDGTIRLWDLGQQRCL-------------ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EEcCCCCeEeecCCCceEEeeecccccee-------------eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999999999999999999988876 568889999999998876 899999999999999987
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
. .++.. +-....+|..+..+...+ -+-++..|+.|+-|.++
T Consensus 287 ~-------~~~tl-ick~daPv~~l~~~~~~~-------------~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 287 P-------AKSTL-ICKEDAPVLKLHLHEHDN-------------SVWVTTTDSSIKRWKLE 327 (735)
T ss_pred c-------hhheE-eecCCCchhhhhhccccC-------------CceeeeccccceecCCc
Confidence 3 12222 222445677777665554 34667778888888653
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=224.51 Aligned_cols=203 Identities=14% Similarity=0.199 Sum_probs=154.0
Q ss_pred eeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCe--------EEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 205 TWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFR--------CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
.+.+|.+.|.+++|+|+ +++|++|+.|+.|++||+.++. ++..+. +|...|.+++|+|....++++++.|
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCC
Confidence 44579999999999996 7899999999999999997642 233444 7889999999999776677899999
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
+.|++||+++++ ....+. +...|.+++|+|+|++|++++.|+.|+|||+++++.+ ..+
T Consensus 148 gtIrIWDl~tg~--------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-------------~tl 205 (568)
T PTZ00420 148 SFVNIWDIENEK--------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-------------SSF 205 (568)
T ss_pred CeEEEEECCCCc--------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-------------EEE
Confidence 999999998765 222333 4578999999999999999999999999999988754 456
Q ss_pred cCCccceEEEE-----Ee--CCeEEEEeCCC----eEEEeeCCCCccccCCCceeEE--EecCCCcceEEEEEEecCCCC
Q 041325 356 RGHTKAILCLA-----VV--SNLLFSGSSDN----TIRIWRRSSSVTDHQKGYSCLA--VLEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 356 ~~~~~~v~~~~-----~~--~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~ 422 (450)
.+|.+.+.+.. |+ +++|++++.|+ .|+|||++.. ..++. .+..+.+.+......+++.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~-------~~pl~~~~ld~~~~~L~p~~D~~tg~-- 276 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT-------TSALVTMSIDNASAPLIPHYDESTGL-- 276 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC-------CCceEEEEecCCccceEEeeeCCCCC--
Confidence 67776553322 22 45888887774 7999999852 12333 3333444443333344455
Q ss_pred CCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
++++|+.|+.|++|++.
T Consensus 277 -----------l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 277 -----------IYLIGKGDGNCRYYQHS 293 (568)
T ss_pred -----------EEEEEECCCeEEEEEcc
Confidence 89999999999999973
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=201.24 Aligned_cols=253 Identities=17% Similarity=0.319 Sum_probs=213.8
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
.....-.++.-+-+|. ||.+.|..... |....|+++.|-+-+|||.-++..+.. ..|.--|.+
T Consensus 41 pmlr~g~tgdwigtfe--ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs-------------f~hkhivk~ 105 (334)
T KOG0278|consen 41 PMLRNGDTGDWIGTFE--GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS-------------FEHKHIVKA 105 (334)
T ss_pred chhccCCCCCcEEeee--ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh-------------hhhhheeee
Confidence 3344556777888999 99999999999 567788999999999999988876554 367778999
Q ss_pred EEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 133 LVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 133 l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
++|+.|. |++|+.++.+|++|++..+ .+...+.+|+
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~------------------------------------------App~E~~ght 143 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPK------------------------------------------APPKEISGHT 143 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCC------------------------------------------CCchhhcCCC
Confidence 9999776 9999999999999998773 2334556899
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
+.|..+.|....+.+++...|++||+||.++++.++.+. .+.+|+++.+++ ++.+++....+.|.+||..+-.
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~--dG~ilTia~gssV~Fwdaksf~--- 216 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQ--DGRILTIAYGSSVKFWDAKSFG--- 216 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeecc--CCCEEEEecCceeEEecccccc---
Confidence 999999999988889999999999999999999999997 778999999995 5566777777899999986544
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+++.++ ....|.+...+|+...+++|++|..++.||..+++.+. .-.++|.++|.|+.|+|+
T Consensus 217 -----~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~------------~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 217 -----LLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG------------SYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred -----ceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceee------------ecccCCCCceEEEEECCC
Confidence 555554 45678899999999999999999999999999998662 124899999999999965
Q ss_pred --eEEEEeCCCeEEEeeCCCC
Q 041325 371 --LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~~ 389 (450)
..++||.||+|++|....+
T Consensus 279 GE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CceeeccCCCceEEEEEecCC
Confidence 8999999999999998764
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=196.16 Aligned_cols=303 Identities=20% Similarity=0.306 Sum_probs=221.3
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceee---eecCCCCcceeEEecCCCceEEEEEeCCe---EEEE
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNI---TSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~ 143 (450)
-|.+.|.++.. .|+++++|+.||.|.|||++....... .....-......-.+|.-.|..+.|.|-. +.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 79999999999 499999999999999999976441110 00000000111134788899999998643 8889
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc---
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--- 220 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 220 (450)
+.|.++++||..+.+.. ..+. ..+.|.+-+++|
T Consensus 121 SFDhtlKVWDtnTlQ~a----------------~~F~----------------------------me~~VYshamSp~a~ 156 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEA----------------VDFK----------------------------MEGKVYSHAMSPMAM 156 (397)
T ss_pred cccceEEEeecccceee----------------EEee----------------------------cCceeehhhcChhhh
Confidence 99999999999987432 1111 334566667776
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-h------hcccc
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-L------QVNKK 293 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~------~~~~~ 293 (450)
...++++|..|-.|++.|+.+|.+.+.+. +|.+.|.++.|+|..+-.|++|+.||.|++||++... + .....
T Consensus 157 sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 157 SHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred cceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc
Confidence 24578888899999999999999999999 9999999999999888789999999999999998751 1 11122
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE-EEeCCeE
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL-AVVSNLL 372 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l 372 (450)
.+.++.-..|.+.+..++|+.++.++++++.|..+++|+..+|+.......+ .......|. .+. + ..+.+.+
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~-----~~~n~~~~~-~~~-~~~~~s~vf 308 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP-----IIHNQTTSF-AVH-IQSMDSDVF 308 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccc-----ccccccccc-eEE-EeecccceE
Confidence 3334445678899999999999999999999999999999988643211000 000000010 111 1 1112333
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+---.++.+.++++-++ ..+..+..|-..|.+..+-|+-+ .+.+|+.|+.|..|-
T Consensus 309 v~~p~~~~lall~~~sg--------s~ir~l~~h~k~i~c~~~~~~fq-------------~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEG--------SFVRRLSTHLKRINCAAYRPDFE-------------QCFTGDMNGNIYMWS 363 (397)
T ss_pred EEEecCCeEEEEEccCc--------eEEEeeecccceeeEEeecCchh-------------hhhccccCCcccccc
Confidence 33445688999998875 78888999999999999999988 899999999999884
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=223.49 Aligned_cols=251 Identities=16% Similarity=0.251 Sum_probs=183.7
Q ss_pred CceEEEEEeC--CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLG--DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
..|.....++ ..+++++.+.....|+...+......... . .. ......
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~----------------G-------------~~-~~~~~~ 70 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDY----------------G-------------KL-ASNPPI 70 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeecccc----------------c-------------cC-CCCCce
Confidence 3444444443 44888888888899987665211100000 0 00 001123
Q ss_pred eecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCe-------EEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 206 WVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFR-------CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++. .+..+. +|...|.+++|+|...++|++++.|+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 568999999999999 88999999999999999997652 455565 799999999999976679999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
|++||+++++ ....+..|...|.+++|+|+|++|++++.|+.|++||+++++.+ ..+.+
T Consensus 150 VrIWDl~tg~--------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v-------------~tl~~ 208 (493)
T PTZ00421 150 VNVWDVERGK--------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV-------------SSVEA 208 (493)
T ss_pred EEEEECCCCe--------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-------------EEEec
Confidence 9999997765 55667788999999999999999999999999999999988755 34556
Q ss_pred Cccce-EEEEEeC--CeEEEEe----CCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCC
Q 041325 358 HTKAI-LCLAVVS--NLLFSGS----SDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 358 ~~~~v-~~~~~~~--~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
|...+ ..+.|.+ +.+++++ .|+.|++||+++.. .++.....+ ...+....|++++.
T Consensus 209 H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-------~p~~~~~~d~~~~~~~~~~d~d~~--------- 272 (493)
T PTZ00421 209 HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-------SPYSTVDLDQSSALFIPFFDEDTN--------- 272 (493)
T ss_pred CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-------CceeEeccCCCCceEEEEEcCCCC---------
Confidence 66543 3455653 4666544 47999999998631 233333323 34556667888888
Q ss_pred CceEEEEEcc-cCCcEEEEEeC
Q 041325 430 STSFLVYSGS-LDCEIKIWQIR 450 (450)
Q Consensus 430 ~~~~~l~s~~-~Dg~i~iw~l~ 450 (450)
+|++++ .|+.|++||++
T Consensus 273 ----~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 273 ----LLYIGSKGEGNIRCFELM 290 (493)
T ss_pred ----EEEEEEeCCCeEEEEEee
Confidence 788877 59999999984
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=196.15 Aligned_cols=268 Identities=17% Similarity=0.233 Sum_probs=209.8
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEE
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRV 151 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~i 151 (450)
...|++|.| .+..|+.++.||++++|+........ ...|..++.+++|.++. +++|+.||.|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-------------~~~~~~plL~c~F~d~~~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-------------KFKHGAPLLDCAFADESTIVTGGLDGQVRR 79 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-------------heecCCceeeeeccCCceEEEeccCceEEE
Confidence 578999999 46777778899999999998774332 24688899999999876 999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
+|+.++.. ..+..|..+|.|+.+++....+++|++|
T Consensus 80 ~Dln~~~~--------------------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD 115 (323)
T KOG1036|consen 80 YDLNTGNE--------------------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWD 115 (323)
T ss_pred EEecCCcc--------------------------------------------eeeccCCCceEEEEeeccCCeEEEcccC
Confidence 99998832 1233589999999999988889999999
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
++|++||.+.......+. ....|.++... ++.|++|+.+..|.+||+++.... ....-...+-.+.+++
T Consensus 116 ~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~------~q~reS~lkyqtR~v~ 184 (323)
T KOG1036|consen 116 KTIKFWDPRNKVVVGTFD--QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEP------FQRRESSLKYQTRCVA 184 (323)
T ss_pred ccEEEEeccccccccccc--cCceEEEEecc---CCEEEEeecCceEEEEEcccccch------hhhccccceeEEEEEE
Confidence 999999999865655554 44589998886 458999999999999999876521 1112223456789999
Q ss_pred EcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc---------cceEEEEEeCC--eEEEEeCCCe
Q 041325 312 LSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT---------KAILCLAVVSN--LLFSGSSDNT 380 (450)
Q Consensus 312 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~--~l~s~~~dg~ 380 (450)
+.|++.-.++++-||.|.+=.++..+.. ......++.|. .+|.+|+|++- .++||+.||.
T Consensus 185 ~~pn~eGy~~sSieGRVavE~~d~s~~~---------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 185 LVPNGEGYVVSSIEGRVAVEYFDDSEEA---------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI 255 (323)
T ss_pred EecCCCceEEEeecceEEEEccCCchHH---------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce
Confidence 9999888999999999988666654111 01112233332 57899999965 8999999999
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
|.+||..+. +.+..+......|.+++|+.+|. .||.|+.
T Consensus 256 V~~Wd~~~r--------Krl~q~~~~~~SI~slsfs~dG~-------------~LAia~s 294 (323)
T KOG1036|consen 256 VNIWDLFNR--------KRLKQLAKYETSISSLSFSMDGS-------------LLAIASS 294 (323)
T ss_pred EEEccCcch--------hhhhhccCCCCceEEEEeccCCC-------------eEEEEec
Confidence 999999873 55666666677899999999999 8888873
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=193.53 Aligned_cols=251 Identities=21% Similarity=0.354 Sum_probs=201.6
Q ss_pred EecCCCceEEEE--EeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLV--VLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
...|.+.|..+. |.+.+|+|++.|++|+|+.++.....
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s---------------------------------------- 46 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS---------------------------------------- 46 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc----------------------------------------
Confidence 457777777654 56888999999999999999887320
Q ss_pred cceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEE--EEeecccccceEEEEEeecCCcE-EEEEcCC
Q 041325 201 HKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCL--ESVKNAHDDAINAIVVSKSNDGF-VYTGSAD 275 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d 275 (450)
.....+.+|.++|..++|-. .|.+|++++.||.|.||.-.+++-. .... .|...|++++|.|.+-++ |++++.|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~-~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhh-hhcccceeecccccccceEEEEeeCC
Confidence 23345668999999999965 8999999999999999999887532 2333 789999999999977665 8899999
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC---C-----------CEEEEeeCCCcEEEEEcCCCceeee
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD---G-----------TVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~-----------~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
|.|.+.+.+... .+........|.-.|++++|.|. | +.|++|+.|..|+||+..+++..
T Consensus 126 G~vsvl~~~~~g-----~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-- 198 (299)
T KOG1332|consen 126 GKVSVLTYDSSG-----GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-- 198 (299)
T ss_pred CcEEEEEEcCCC-----CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh--
Confidence 999999987652 23345566779999999999985 4 57999999999999999976433
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeCC------eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVSN------LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
....+.+|...|..++|.|. +|+++++||+|.||-.... .+.+ ....++.....+..+.|
T Consensus 199 ---------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e----~e~w-k~tll~~f~~~~w~vSW 264 (299)
T KOG1332|consen 199 ---------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE----YEPW-KKTLLEEFPDVVWRVSW 264 (299)
T ss_pred ---------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc----cCcc-cccccccCCcceEEEEE
Confidence 45668999999999999864 8999999999999987732 1111 12234446788999999
Q ss_pred EecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 416 VVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+..+. +|+.++.|+.|.+|.
T Consensus 265 S~sGn-------------~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 265 SLSGN-------------ILAVSGGDNKVTLWK 284 (299)
T ss_pred ecccc-------------EEEEecCCcEEEEEE
Confidence 99999 999999999999996
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=206.80 Aligned_cols=281 Identities=18% Similarity=0.335 Sum_probs=223.7
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
.|..-|.+++. ..++++||+. |.|+|||+........ ...+-.......|.++...+|+ |++|++-.+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P-------vsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP-------VSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc-------cccccccCcccceeeeEecCCCceEEeccccce
Confidence 69999999999 5788999987 8999999875421111 1111122345678888888877 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
+.|||+...+... ...+....-...+++.+||.+..+++
T Consensus 489 lsiWDLAapTpri-----------------------------------------kaeltssapaCyALa~spDakvcFsc 527 (705)
T KOG0639|consen 489 LSIWDLAAPTPRI-----------------------------------------KAELTSSAPACYALAISPDAKVCFSC 527 (705)
T ss_pred eeeeeccCCCcch-----------------------------------------hhhcCCcchhhhhhhcCCccceeeee
Confidence 9999998774310 00111122357789999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
+.||.|.|||+.+...++.++ +|.+.+.||.++++ ...|.+|+-|++||-||++++. .+... ...+.|.
T Consensus 528 csdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~d-GtklWTGGlDntvRcWDlregr--------qlqqh-dF~SQIf 596 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGR--------QLQQH-DFSSQIF 596 (705)
T ss_pred ccCCcEEEEEcccceeeeccc-CCCCCceeEEecCC-CceeecCCCccceeehhhhhhh--------hhhhh-hhhhhhe
Confidence 999999999999999999999 99999999999974 3479999999999999998776 33332 2467899
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 386 (450)
++-++|++.+++.|-+++.+-|......+ +..+..|...|.++.|. |+++++.+.|+.+..|..
T Consensus 597 SLg~cP~~dWlavGMens~vevlh~skp~--------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSNVEVLHTSKPE--------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred ecccCCCccceeeecccCcEEEEecCCcc--------------ceeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 99999999999999999999888776432 24667789999999987 889999999999999998
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.-+ ..+...+ ..+.|.++..+.|.+ +++||+.|....+|.+
T Consensus 663 PyG--------asiFqsk-E~SsVlsCDIS~ddk-------------yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 663 PYG--------ASIFQSK-ESSSVLSCDISFDDK-------------YIVTGSGDKKATVYEV 703 (705)
T ss_pred ccc--------cceeecc-ccCcceeeeeccCce-------------EEEecCCCcceEEEEE
Confidence 765 2233333 467899999999999 9999999999999986
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=215.01 Aligned_cols=317 Identities=19% Similarity=0.230 Sum_probs=223.3
Q ss_pred EEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC------------Ce-EEEE
Q 041325 79 PSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG------------DK-LFSA 143 (450)
Q Consensus 79 ~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------------~~-l~s~ 143 (450)
-++.|| ...|...-.|..++|||+++-..+.. ...+.-|...|+.+.-.| .. ++++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk---------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC 398 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK---------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC 398 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccc---------eeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence 355665 67788888999999999987553222 123557888888887643 22 9999
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
+.|++||+|+++............+.. .+..++..++...... +....+..+......+..-.+.+++.+|+|+
T Consensus 399 SsD~TIRlW~l~~ctnn~vyrRNils~----~l~ki~y~d~~~q~~~--d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAFCTNNQVYRRNILSA----NLSKIPYEDSTQQIMH--DASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cCCCcEEEeecccccccceeecccchh----hhhcCccccCchhhhh--hccCCcccccchhhcCcccceEEEEECCCcc
Confidence 999999999998753321111111000 0000000000000000 0000001111112223445799999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC--CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN--DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+|++|..-|.+++||+.+.+....+. .|+..|.|+.++... ..+|++++.|..|++||+... ..+++++.
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-------y~l~qtld 544 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-------YDLVQTLD 544 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-------cchhhhhc
Confidence 99999999999999999988887777 999999999998422 236999999999999998543 23444444
Q ss_pred hcccce-------------------------------------------------EEEEEcCCCCEEEEeeCCCcEEEEE
Q 041325 302 KHKSAV-------------------------------------------------TALALSTDGTVLYSGACDRSILVWE 332 (450)
Q Consensus 302 ~~~~~i-------------------------------------------------~~l~~~~~~~~l~~g~~dg~i~vwd 332 (450)
+|.+.| ..|+..|..+++++++.|..|+|||
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 444444 4555556677899999999999999
Q ss_pred cCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcce
Q 041325 333 RDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410 (450)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 410 (450)
+.+++....+ ..-..|.+....+..+ +.||++...|.++.++|+.++ +++..+.||...|
T Consensus 625 i~sgKq~k~F----------Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg--------EcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 625 IESGKQVKSF----------KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG--------ECVAQMTGHSEAV 686 (1080)
T ss_pred ccccceeeee----------cccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc--------hhhhhhcCcchhe
Confidence 9998866311 2234566666666666 559999999999999999986 8999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.+.|.+|-+ .|++.+.||.|.||.|
T Consensus 687 TG~kF~nDCk-------------HlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 687 TGVKFLNDCK-------------HLISVSGDGCIFVWKL 712 (1080)
T ss_pred eeeeecccch-------------hheeecCCceEEEEEC
Confidence 9999999999 8999999999999986
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=192.16 Aligned_cols=316 Identities=18% Similarity=0.241 Sum_probs=209.7
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.-.+.+|+ ||.+.|++++| ||++|||++.|+.|++|++++-..... ..+...-.-+-.+.+.|.||-
T Consensus 76 pl~~~~LK--gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------r~~R~nve~dhpT~V~FapDc~ 145 (420)
T KOG2096|consen 76 PLNVSVLK--GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------RCIRQNVEYDHPTRVVFAPDCK 145 (420)
T ss_pred chhhhhhh--ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------hHhhccccCCCceEEEECCCcc
Confidence 34456677 99999999999 899999999999999999987432111 000011111245788899887
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
++++-...++++|.+...+. +...... .....+. --..|.-.+..+-
T Consensus 146 s~vv~~~~g~~l~vyk~~K~~d------G~~~~~~-v~~D~~~------------------------f~~kh~v~~i~iG 194 (420)
T KOG2096|consen 146 SVVVSVKRGNKLCVYKLVKKTD------GSGSHHF-VHIDNLE------------------------FERKHQVDIINIG 194 (420)
T ss_pred eEEEEEccCCEEEEEEeeeccc------CCCCccc-ccccccc------------------------cchhcccceEEEe
Confidence 55666667899998865521 0000000 0000000 0013555677777
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
...++.++++++.|..|.+|+++ |+.+..+. .....-+..+.+|++ .++++++..--|++|.+--.+-........+
T Consensus 195 iA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecC-Cceeeeec-cccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 77789999999999999999998 88888887 555666778899854 4899999999999999754432222334456
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee-ccccCCccceEEEEEe--CCeEEE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK-GALRGHTKAILCLAVV--SNLLFS 374 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s 374 (450)
..+++|.+.|..++|+++...+++.+.||++++||.+-.... ..++..+..- ..+....+.-..++.+ ++.|+.
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~---~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA---GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec---CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence 778899999999999999999999999999999998742211 1111000000 1111111222244444 455554
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+....++++..+.+.. ..+ .-..|...|.+++|+++|+ +++|+| |..+++.
T Consensus 349 -s~gs~l~~~~se~g~~-----~~~--~e~~h~~~Is~is~~~~g~-------------~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 349 -SFGSDLKVFASEDGKD-----YPE--LEDIHSTTISSISYSSDGK-------------YIATCG-DRYVRVI 399 (420)
T ss_pred -ecCCceEEEEcccCcc-----chh--HHHhhcCceeeEEecCCCc-------------EEeeec-ceeeeee
Confidence 4455799998887521 112 2245899999999999999 899887 5566664
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-27 Score=188.55 Aligned_cols=262 Identities=15% Similarity=0.311 Sum_probs=201.6
Q ss_pred EecCCCceEEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
-.+|.+-|.++.|. ++++++|+.|++|+|||.+..... .
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---------------------------------------W 49 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---------------------------------------W 49 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---------------------------------------e
Confidence 45888899999987 566999999999999998665321 1
Q ss_pred cceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCC---------CeEEEEeecccccceEEEEEeecCCcE-
Q 041325 201 HKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSD---------FRCLESVKNAHDDAINAIVVSKSNDGF- 268 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~- 268 (450)
.....++.|.+.|..+.|-+ -|+.+|+++.|+++.||.-.. -.....+. ...+.|+.+.|.|..-++
T Consensus 50 ~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 50 SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceE
Confidence 22335667999999999965 699999999999999997621 11233343 567899999999876664
Q ss_pred EEEEcCCCcEEEEeCcchhhhccccchhhhhHh-------hcccceEEEEEcC---CCCEEEEeeCC-----CcEEEEEc
Q 041325 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE-------KHKSAVTALALST---DGTVLYSGACD-----RSILVWER 333 (450)
Q Consensus 269 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~~~---~~~~l~~g~~d-----g~i~vwd~ 333 (450)
+++++.||.+|||+....- ....+.+..++. .+.....|+.|+| ...+|+.|+.+ +.++||..
T Consensus 129 lA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPM--NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred EEEeccCcEEEEEecCCcc--ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 8999999999999875532 123455666665 4667789999998 35688888876 47888887
Q ss_pred CCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC------eEEEEeCCCeEEEeeCCCCc------------cccCC
Q 041325 334 DQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN------LLFSGSSDNTIRIWRRSSSV------------TDHQK 395 (450)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~s~~~dg~v~iwd~~~~~------------~~~~~ 395 (450)
..+- ........+.+|..+|+.++|.|+ +||+++.|| |+||++.... .....
T Consensus 207 ~e~~---------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l 276 (361)
T KOG2445|consen 207 NENG---------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL 276 (361)
T ss_pred cCCc---------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc
Confidence 6532 233455678899999999999865 899999999 9999988421 01123
Q ss_pred CceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 396 GYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 396 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..+.+..+.+|.+.|..+.|.-.|. .|++.|.||+||+|+.
T Consensus 277 ~v~~vs~~~~H~~~VWrv~wNmtGt-------------iLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 277 PVEKVSELDDHNGEVWRVRWNMTGT-------------ILSSTGDDGCVRLWKA 317 (361)
T ss_pred ceEEeeeccCCCCceEEEEEeeeee-------------EEeecCCCceeeehhh
Confidence 4566778899999999999999999 9999999999999963
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-27 Score=181.03 Aligned_cols=299 Identities=18% Similarity=0.251 Sum_probs=224.6
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
-++...|.|.+..-+..+++.+++...- |.+.... .-.+.+..++-...++-+ .|.+.|.|.+| +|++|+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~y----p~l~~~r-~~hea~~~pp~v~~kr~k--hhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAY----PALIDLR-HAHEAAKQPPSVLCKRNK--HHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEcc----ccccCcc-cccccccCCCeEEeeecc--ccCccEEEEEecCccCeEEe
Confidence 4678899999999999988888876321 1111110 011112222224445555 89999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe------EEEEeC-CCeEEEEEcCCCceeEEe
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK------LFSAHQ-DHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------l~s~~~-dg~i~iw~~~~~~~~~~~ 163 (450)
|+.|.+|++--++...+... ...+.+..|.+.|..++|..+- |++++. |..|++-|-..+
T Consensus 107 gsndk~ik~l~fn~dt~~~~-------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g------ 173 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNAT-------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG------ 173 (350)
T ss_pred cCCCceEEEEeccccccccc-------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC------
Confidence 99999999987665443322 1223477899999999997332 666554 566666676666
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
.....+.+|++.|.++ ++=++-++++|+.|.+|++||++-..
T Consensus 174 -------------------------------------~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 174 -------------------------------------QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred -------------------------------------CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc
Confidence 2333455799988876 44568899999999999999999988
Q ss_pred EEEEeecc------cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 244 CLESVKNA------HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 244 ~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
++..+... ....|.++++.|.+ .+|++|..|....+||++.+. .++.+..|...|.++.|+|...
T Consensus 216 ~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r--------~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 216 CVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR--------MIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred eeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc--------eeeeeCCCccceeEEEeCCCce
Confidence 88877531 23578999999854 499999999999999998877 8899999999999999999999
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 318 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
++++++.|..|++-|+... ............|...+..+.|.+. -+++.+.|.++.+|-++
T Consensus 287 yllt~syd~~ikltdlqgd---------la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 287 YLLTCSYDMKIKLTDLQGD---------LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecccceEEEeecccc---------hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999998732 1111233455678888999999976 78899999999999764
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-28 Score=189.63 Aligned_cols=250 Identities=22% Similarity=0.305 Sum_probs=196.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe---EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~---l~s~~~d 146 (450)
.|.+.|..+.. -|++|||++.|++|+|+.......... ...+.||.++|+.++|. |.. |++++.|
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l---------l~~L~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL---------LAELTGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee---------eeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence 89999998877 499999999999999999887653211 23488999999999997 333 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc--CCCE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--DGSL 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 224 (450)
|.|.||.-+++.- ........|...|++++|.| -|-.
T Consensus 80 gkVIiWke~~g~w-----------------------------------------~k~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 80 GKVIIWKEENGRW-----------------------------------------TKAYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred ceEEEEecCCCch-----------------------------------------hhhhhhhhhcccceeecccccccceE
Confidence 9999999988721 22233446999999999998 4678
Q ss_pred EEEEeCCCcEEEEecCCC--eEEEEeecccccceEEEEEeecCC-------------cEEEEEcCCCcEEEEeCcchhhh
Q 041325 225 LYSTSWDRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSND-------------GFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-------------~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
|++++.||.|.|.+.+.. -....+...|.-.|++++|.|..- ..|++|+.|+.|+||+...+.
T Consensus 119 LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-- 196 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-- 196 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence 999999999999988753 344445558999999999998521 259999999999999987653
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCC----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDG----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
+.....+.+|...|+.++|.|.- .+|++++.||++.||..+.... .. ....+......+..+
T Consensus 197 ----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-------~w---k~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 197 ----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-------PW---KKTLLEEFPDVVWRV 262 (299)
T ss_pred ----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-------cc---cccccccCCcceEEE
Confidence 44666799999999999999953 5899999999999998773210 11 112233355678888
Q ss_pred EEe--CCeEEEEeCCCeEEEeeCCC
Q 041325 366 AVV--SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 366 ~~~--~~~l~s~~~dg~v~iwd~~~ 388 (450)
+|+ ++.|+.++.|+.|.+|.-+.
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCC
Confidence 887 88999999999999997553
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-29 Score=200.19 Aligned_cols=248 Identities=17% Similarity=0.267 Sum_probs=204.6
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
+...-+.|..|+||+ |++|+.||.|.+||..+++...... -+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-----------------------------------YQA 255 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----------------------------------YQA 255 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-----------------------------------hhh
Confidence 556678899999988 9999999999999999885321000 011
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
.-.+.-+.++|.|+.|+.|..++++|+.||.|++|.+++|.|++.+...|...|+++.|+.++. .+++++.|.++++--
T Consensus 256 qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 256 QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHG 334 (508)
T ss_pred hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEec
Confidence 1123347789999999999999999999999999999999999999989999999999997544 789999999999999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
+..++ .++.+.+|.+-|+...|.+||..+++++.||+|++|+..+.+++..+ ...+...+|
T Consensus 335 lKSGK--------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf-----------k~~~~d~~v 395 (508)
T KOG0275|consen 335 LKSGK--------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF-----------KPLGTDYPV 395 (508)
T ss_pred cccch--------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc-----------cCCCCcccc
Confidence 98877 89999999999999999999999999999999999999998877322 223345667
Q ss_pred EEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC---CCcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 363 LCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG---HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 363 ~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
..+..- +..++.|...++|+|.++.. +.+..+.. ..+...+...+|.|. ++.
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qG---------QvVrsfsSGkREgGdFi~~~lSpkGe-------------wiY 453 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQG---------QVVRSFSSGKREGGDFINAILSPKGE-------------WIY 453 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccc---------eEEeeeccCCccCCceEEEEecCCCc-------------EEE
Confidence 776664 45999999999999999884 55555532 344566777889988 999
Q ss_pred EcccCCcEEEEEe
Q 041325 437 SGSLDCEIKIWQI 449 (450)
Q Consensus 437 s~~~Dg~i~iw~l 449 (450)
+.+.|+.++.+.+
T Consensus 454 cigED~vlYCF~~ 466 (508)
T KOG0275|consen 454 CIGEDGVLYCFSV 466 (508)
T ss_pred EEccCcEEEEEEe
Confidence 9999999988864
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=187.61 Aligned_cols=281 Identities=14% Similarity=0.246 Sum_probs=204.4
Q ss_pred CCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe---EEEEeCC
Q 041325 73 GNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~---l~s~~~d 146 (450)
+|.+-|.|+.|| |+++|||+.|++|+|||.++..-... .......|.+.|..+.|. |.. +++++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~--------~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS--------CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceE--------EeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence 899999999995 99999999999999999754432222 112367899999999997 433 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc--CCCE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--DGSL 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 224 (450)
+++.||.-..... ...... ......+....+.|+++.|.| -|-.
T Consensus 83 rtv~iWEE~~~~~-------~~~~~~---------------------------Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 83 RTVSIWEEQEKSE-------EAHGRR---------------------------WVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred Cceeeeeeccccc-------ccccce---------------------------eEEEEEeecCCcceeEEEecchhcceE
Confidence 9999998642210 000001 112233445777899999999 5778
Q ss_pred EEEEeCCCcEEEEecCCCeEEEEee------------cccccceEEEEEeecCC--cEEEEEcCC-----CcEEEEeCcc
Q 041325 225 LYSTSWDRTFKIWRTSDFRCLESVK------------NAHDDAINAIVVSKSND--GFVYTGSAD-----TKIKVWKKLR 285 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~--~~l~~~~~d-----g~i~vwd~~~ 285 (450)
|++++.||.+|||+..+.-.+.... ..+..+..|+.|+|..- .+|++|+.+ +.+.||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 9999999999999876543332221 13556788999986432 257777766 5789998765
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCC----CCEEEEeeCCCcEEEEEcCCCce-------eeeCCCCCCceeeecc
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTD----GTVLYSGACDRSILVWERDQGNY-------IVDGDDDSGHMVLKGA 354 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~~~l~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~ 354 (450)
.. +.+..+.++.+|..+|+.++|.|+ -.+|++++.|| |+||.+..... ................
T Consensus 209 ~~----rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 209 NG----RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred Cc----ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 54 566677888899999999999995 35899999999 99999984221 1011111233455567
Q ss_pred ccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 355 LRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 355 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
+..|.+.|..+.|+ |..|++.+.||.||+|...- ...++|...+..
T Consensus 284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany-----~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY-----NNLWKCTSVLKA 331 (361)
T ss_pred ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh-----hhhheeeeEEec
Confidence 88999999999998 88999999999999998764 334566666654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=195.97 Aligned_cols=362 Identities=19% Similarity=0.212 Sum_probs=244.4
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCC-cceEEEEE-eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNS-SYIPSLAI-AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~-~~v~~~~~-d~~~l~t 90 (450)
-+..+.|.|..+.+........+.|- ...... -.+..-.|+ +++ ..|.|++| .+.-++|
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw---------~~~~~~--------l~k~~~~fe--k~ekk~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFW---------TLRGGS--------LVKRQGIFE--KREKKFVLCVTFLENGDVIT 262 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEE---------EccCCc--------eEEEeeccc--cccceEEEEEEEcCCCCEEe
Confidence 44566777777777777666666652 000000 012223344 333 57999999 6677899
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCccc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
|..+|.|.||+..+.+..+. ...|.+.|.+++...++ |++|+.|+.|..||-.-.+.. + ...
T Consensus 263 gDS~G~i~Iw~~~~~~~~k~------------~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r----~-~el 325 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNRISKQ------------VHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLR----E-TEL 325 (626)
T ss_pred ecCCceEEEEeCCCceEEeE------------eeecCCceEEEEEecCccEeecCccceEEeccccccccc----c-ccC
Confidence 99999999999877765554 33899999999999887 999999999999993222111 1 111
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEE--EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEE
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQ--VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLES 247 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 247 (450)
+...-.+.++......+.+....+..++ +.+.......+|.+....++.+|+.+++++++.|+.+++|+ ..+....
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 1111223333322222333333332222 22334455678999999999999999999999999999999 4444444
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
.. ...++.++.|+|.+ .++.|+..|...+.|.++.. .+..-. .++++++++|+|+|.+||.|+.|+.
T Consensus 404 ~~--~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~--------lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 404 KI--IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQD--------LVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred EE--ecCceeEeeccCcc--eEEEeeccceEEEEecccce--------eEEEEe-cCCceEEEEEcCCCCEEEEecCCCe
Confidence 43 56889999999844 99999999999999987744 333333 3789999999999999999999999
Q ss_pred EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccc-------------
Q 041325 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTD------------- 392 (450)
Q Consensus 328 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~------------- 392 (450)
|++|.+......+ ...... +..+|+.+.|+. +++.+-+.|-.|..|....-...
T Consensus 471 iyiy~Vs~~g~~y---------~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c 539 (626)
T KOG2106|consen 471 IYIYRVSANGRKY---------SRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTC 539 (626)
T ss_pred EEEEEECCCCcEE---------EEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEE
Confidence 9999987654321 111122 225666666653 36666666666666622110000
Q ss_pred ------------------------------------------cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCC
Q 041325 393 ------------------------------------------HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 393 ------------------------------------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
-.........+.+|.+-|++++|.-+..
T Consensus 540 ~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~---------- 609 (626)
T KOG2106|consen 540 TLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS---------- 609 (626)
T ss_pred EEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc----------
Confidence 0122344556788999999999999988
Q ss_pred ceEEEEEcccCCcEEEEEe
Q 041325 431 TSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~iw~l 449 (450)
.+++.+.|.+|..|++
T Consensus 610 ---~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 610 ---HLISTGKDTSIMQWRL 625 (626)
T ss_pred ---eEEecCCCceEEEEEe
Confidence 7888889999999997
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=217.13 Aligned_cols=284 Identities=14% Similarity=0.205 Sum_probs=214.6
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe---CCeEEEEeCCCeEEE
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL---GDKLFSAHQDHKIRV 151 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~i 151 (450)
...+++. +-..++.++. ..+.|+.+................... .-.+..+.|. .+.|++++..|.|.+
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~-----~~S~~DVkW~~~~~NlIAT~s~nG~i~v 114 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNK-----FYSAADVKWGQLYSNLIATCSTNGVISV 114 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccce-----eeehhhcccccchhhhheeecCCCcEEE
Confidence 3455555 5556666655 467777665433211111000111110 1244556666 334999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSW 230 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 230 (450)
||+.... +......+..|...++++.|++ ...+|++|+.
T Consensus 115 Wdlnk~~----------------------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ 154 (839)
T KOG0269|consen 115 WDLNKSI----------------------------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQ 154 (839)
T ss_pred EecCccc----------------------------------------cchhhhHhhhhccceeeeeeccCCccEEEecCC
Confidence 9998631 1122234557999999999999 6788999999
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
||+|++||++..+....+. .....|..|.|+|..++.++++...|.+++||++... .....+.+|.++|.++
T Consensus 155 Dg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-------r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 155 DGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-------RCEKKLTAHNGPVLCL 226 (839)
T ss_pred CceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCch-------hHHHHhhcccCceEEE
Confidence 9999999999988888887 6888999999999888899999999999999998654 4778888999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeC--CCeEEEee
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSS--DNTIRIWR 385 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~--dg~v~iwd 385 (450)
.|+|++.+||+|+.|+.|+|||..+++.. . ........+|.++.|-|. +|++++. |-.|+|||
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~-----------~-~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAK-----------P-KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCcc-----------c-eeEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999999999999999999865421 1 111223467899999865 7888775 67899999
Q ss_pred CCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++.. +.+...+..|...++.++|...... .+.+++.||+|.
T Consensus 295 vrRP-------YIP~~t~~eH~~~vt~i~W~~~d~~------------~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 295 VRRP-------YIPYATFLEHTDSVTGIAWDSGDRI------------NLWSCSKDGTVL 335 (839)
T ss_pred eccc-------cccceeeeccCccccceeccCCCce------------eeEeecCccHHH
Confidence 9864 6788889999999999999774332 899999999874
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=199.01 Aligned_cols=259 Identities=26% Similarity=0.402 Sum_probs=207.4
Q ss_pred eEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 121 VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
.....|.-+|.+++++++. .++++.||+|.-|++.++.............. ....+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k----~~~~~------------------ 193 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLK----SHGNP------------------ 193 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhh----hccCC------------------
Confidence 3467899999999999885 99999999999999999854321111100000 00000
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
..... ..|.+.+.+++.++||++|++|+.|..|.||+.++.+.+..+. +|.+.|.+++|-. +...+++++.|+.|
T Consensus 194 --~k~~r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~-gt~~lys~s~Drsv 268 (479)
T KOG0299|consen 194 --LKESR-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRK-GTSELYSASADRSV 268 (479)
T ss_pred --CCccc-ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeec-CccceeeeecCCce
Confidence 00001 3699999999999999999999999999999999999999988 8999999999986 45579999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
++|++.... .+.++.+|.+.|..|....-++.+-+|+.|+++++|++..... ..+.+|
T Consensus 269 kvw~~~~~s--------~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--------------lifrg~ 326 (479)
T KOG0299|consen 269 KVWSIDQLS--------YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--------------LIFRGG 326 (479)
T ss_pred EEEehhHhH--------HHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--------------eeeeCC
Confidence 999996655 8889999999999999888888888888999999999975433 356778
Q ss_pred ccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe------------cCCCcceEEEEEEecCCCCCCC
Q 041325 359 TKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL------------EGHRRPVKCLTAVVDSDYSNRN 425 (450)
Q Consensus 359 ~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------~~h~~~v~~l~~~~~~~~~~~~ 425 (450)
.+.+-|++|- .+.+++|+.||.|.+|++.... ++... ..+...|++|+..|...
T Consensus 327 ~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk--------plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd----- 393 (479)
T KOG0299|consen 327 EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK--------PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD----- 393 (479)
T ss_pred CCCeeeEEEecccceeeccCCceEEEeeecccC--------ceeEeeccccccCCccccccccceeeeEecccCc-----
Confidence 8899999997 5599999999999999988642 22211 11234789999999988
Q ss_pred CCCCCceEEEEEcccCCcEEEEEe
Q 041325 426 SDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 426 ~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++++|+.+|.|++|.+
T Consensus 394 --------L~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 394 --------LLASGSWSGCVRLWKI 409 (479)
T ss_pred --------eEEecCCCCceEEEEe
Confidence 9999999999999986
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=206.90 Aligned_cols=374 Identities=18% Similarity=0.232 Sum_probs=248.1
Q ss_pred CCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee--CCCcEEEecCCCCCceeeeecCCCC
Q 041325 42 PSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS--SNGEIRAWNRDPNNYVNITSTDVGD 117 (450)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs--~dg~v~vw~~~~~~~~~~~~~~~~~ 117 (450)
|-...++....+-+..+.......-+.+. .|..+++|++| +|+|+|||- ....++||++.....+..
T Consensus 47 p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvn--ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAE------- 117 (1080)
T KOG1408|consen 47 PCSGLCAYPAGCVVVLFNVDSCTQSHLVN--SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAE------- 117 (1080)
T ss_pred ccccceeeccCcEEEEEcccccchhheec--ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhh-------
Confidence 33345666667777777777777777777 89999999999 899999985 567899999998776555
Q ss_pred cceeEEecCCCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCce------------eEEeccC-------cccccce-
Q 041325 118 HANVVATGNGDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTS------------AYYSTSG-------KLKNKYY- 173 (450)
Q Consensus 118 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~------------~~~~~~~-------~~~~~~~- 173 (450)
+..|.-.|+|++|+|.. +++.+. |-.|.+||++.... +.+...+ ....+.+
T Consensus 118 -----fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wy 192 (1080)
T KOG1408|consen 118 -----FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWY 192 (1080)
T ss_pred -----hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEE
Confidence 77899999999999766 665544 45677887654321 0011111 0000000
Q ss_pred -----eeeeeccCC--------------------------------------------------------------Ccce
Q 041325 174 -----ERIATLPTL--------------------------------------------------------------NDRF 186 (450)
Q Consensus 174 -----~~~~~~~~~--------------------------------------------------------------~~~~ 186 (450)
.....+|.. ..++
T Consensus 193 l~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~ 272 (1080)
T KOG1408|consen 193 LQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRL 272 (1080)
T ss_pred eeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecce
Confidence 000000000 0111
Q ss_pred eEeeecCceEEEeecceeee------------------------ecC----CCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 041325 187 TKCFLANNYVQVRRHKKCTW------------------------VHH----VDTVSALALSSDGSLLYSTSWDRTFKIWR 238 (450)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~------------------------~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 238 (450)
..+...++.+++.......+ .+. --...++.|++....|.+...|..+++||
T Consensus 273 I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWD 352 (1080)
T KOG1408|consen 273 IACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWD 352 (1080)
T ss_pred EEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEe
Confidence 11222222222221111100 000 01234677888888999999999999999
Q ss_pred cCCCeEEEE---eecccccceEEEEEeec----------CCcEEEEEcCCCcEEEEeCcchhhhccc-------------
Q 041325 239 TSDFRCLES---VKNAHDDAINAIVVSKS----------NDGFVYTGSADTKIKVWKKLRAALQVNK------------- 292 (450)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~v~~~~~~~~----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------- 292 (450)
+++-+.+.. +. .|...|+.+...|. ..+.+++++.|++||+||+.........
T Consensus 353 vrD~~kvgk~~s~l-yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~ 431 (1080)
T KOG1408|consen 353 VRDVNKVGKCSSML-YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIP 431 (1080)
T ss_pred ccccccccceeeee-eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCc
Confidence 987543322 22 47788888876652 1236999999999999998763211000
Q ss_pred ----cc------------hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 293 ----KH------------SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 293 ----~~------------~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.. +.....-+....+.+++.+|+|++|++|..-|.|+||++.+.+. ...+.
T Consensus 432 y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------------~~~~e 498 (1080)
T KOG1408|consen 432 YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------------TCFME 498 (1080)
T ss_pred cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-------------hhhee
Confidence 00 00001112345689999999999999999999999999987653 36788
Q ss_pred CCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC----------
Q 041325 357 GHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY---------- 421 (450)
Q Consensus 357 ~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---------- 421 (450)
+|...|.|+.|+. .+|++++.|+.|.|||+... +.++.++.+|...|+++.|.-++--
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-------y~l~qtld~HSssITsvKFa~~gln~~MiscGADk 571 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK 571 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-------cchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence 9999999999982 39999999999999999753 6788999999999999999877621
Q ss_pred --------------------------CCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 422 --------------------------SNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 422 --------------------------~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
-.+..+..+...++++++.|..|+||+++
T Consensus 572 simFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred hhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 01112445666788999999999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-27 Score=211.37 Aligned_cols=331 Identities=19% Similarity=0.225 Sum_probs=254.0
Q ss_pred CCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCC
Q 041325 40 SLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGD 117 (450)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~ 117 (450)
+.+--..+......+.+++.-.+++.+++++ ++...|+++.- -=..+|.|..+|+|.|+|+..++.+..
T Consensus 169 ~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~--~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s------- 239 (910)
T KOG1539|consen 169 STYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ--EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS------- 239 (910)
T ss_pred hhheeeEEEeecCCcEEEEEeccCcEEEEec--ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE-------
Confidence 3333344455666788889999999999999 99999999988 467899999999999999999987766
Q ss_pred cceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc
Q 041325 118 HANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN 194 (450)
Q Consensus 118 ~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (450)
+...-+.|++++|..|+ +++|+..|.+.+||++.... +..
T Consensus 240 -----Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl----------------~~v---------------- 282 (910)
T KOG1539|consen 240 -----FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL----------------INV---------------- 282 (910)
T ss_pred -----EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee----------------eee----------------
Confidence 44445899999999666 88888899999999998732 111
Q ss_pred eEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEE
Q 041325 195 YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
....|.+.|..+.|.+....+++.+.|+.+++|=.+++. .+...+.+|..+..++.|......++.+
T Consensus 283 ----------~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 283 ----------TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred ----------eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence 122588899999999999999999999999998665443 2334455899999999999766668999
Q ss_pred EcCCCcEEEEeCcchhhhcc--------------c--------------------------------------cch----
Q 041325 272 GSADTKIKVWKKLRAALQVN--------------K--------------------------------------KHS---- 295 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~--------------~--------------------------------------~~~---- 295 (450)
++.|++++.+++........ . .+.
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 99999888887644321100 0 000
Q ss_pred -h------hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 296 -L------VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 296 -~------~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
. ...++.....+++++.++.|++.+.|...|.|-+|++.+|-... --..-..|..+|++++.+
T Consensus 433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~----------sf~~~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK----------SFGDSPAHKGEVTGLAVD 502 (910)
T ss_pred ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec----------ccccCccccCceeEEEec
Confidence 0 00011122567899999999999999999999999999875321 001235899999999998
Q ss_pred C--CeEEEEeCCCeEEEeeCCCCcccc---------------------------------CCCceeEEEecCCCcceEEE
Q 041325 369 S--NLLFSGSSDNTIRIWRRSSSVTDH---------------------------------QKGYSCLAVLEGHRRPVKCL 413 (450)
Q Consensus 369 ~--~~l~s~~~dg~v~iwd~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~v~~l 413 (450)
+ +.+++++.+|.+++||+....... ....+.++.+.+|...|+++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 4 589999999999999998754110 11223455678999999999
Q ss_pred EEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 414 TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|+||++ +|++++.|++|++||+
T Consensus 583 ~FS~Dgr-------------WlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 583 TFSPDGR-------------WLISASMDSTIRTWDL 605 (910)
T ss_pred EeCCCCc-------------EEEEeecCCcEEEEec
Confidence 9999999 9999999999999997
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=184.12 Aligned_cols=237 Identities=19% Similarity=0.328 Sum_probs=199.1
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
..+|.+.|.+++|+-++ |++|+.|+++.+|+++....
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~----------------------------------------- 54 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF----------------------------------------- 54 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----------------------------------------
Confidence 56899999999999655 99999999999999987621
Q ss_pred cceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.......+|.+.|-.++|+| +.+++++++.|.+|++||++.+++...+. ....-.-+.|+|+ +++++++..|..|.
T Consensus 55 ~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~-g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 55 RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPD-GEYIAVGNKDDRIT 131 (313)
T ss_pred hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCC-CCEEEEecCcccEE
Confidence 12233457999999999998 77899999999999999999999999887 4444456789984 55999999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
..|.++.+ .....+ ....+..++|+.++++++.....|.|.|......+++ ..+.+|.
T Consensus 132 ~id~r~~~--------~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-------------~si~AH~ 189 (313)
T KOG1407|consen 132 FIDARTYK--------IVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-------------QSIKAHP 189 (313)
T ss_pred EEEecccc--------eeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccc-------------cccccCC
Confidence 99997765 333332 4456788899988888888777899999998876644 7899999
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
....|+.|++ +++|+|+.|-.+.+||++. ..|++.+..+.-+|..|.|+.+++ +||+
T Consensus 190 snCicI~f~p~GryfA~GsADAlvSLWD~~E--------LiC~R~isRldwpVRTlSFS~dg~-------------~lAS 248 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSADALVSLWDVDE--------LICERCISRLDWPVRTLSFSHDGR-------------MLAS 248 (313)
T ss_pred cceEEEEECCCCceEeeccccceeeccChhH--------hhhheeeccccCceEEEEeccCcc-------------eeec
Confidence 9999999984 5999999999999999986 578899999999999999999999 9999
Q ss_pred cccCCcEEE
Q 041325 438 GSLDCEIKI 446 (450)
Q Consensus 438 ~~~Dg~i~i 446 (450)
||+|..|-|
T Consensus 249 aSEDh~IDI 257 (313)
T KOG1407|consen 249 ASEDHFIDI 257 (313)
T ss_pred cCccceEEe
Confidence 999998844
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=213.12 Aligned_cols=239 Identities=29% Similarity=0.481 Sum_probs=198.1
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++||.||.|++|++......... .....+..|.+.|+.++..
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~-------------------------------------~~~asme~HsDWVNDiiL~ 82 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPST-------------------------------------PYIASMEHHSDWVNDIILC 82 (735)
T ss_pred EEecCCCceEEEeccccccCCccc-------------------------------------chhhhhhhhHhHHhhHHhh
Confidence 999999999999999866321000 0122345799999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh--hccccch
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL--QVNKKHS 295 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~ 295 (450)
.+++.|++++.|-+|++|+...+ -+...+. .|.+.|.|+++......++++|+-|+.|.+||+..+.. .......
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 99999999999999999999877 4667777 89999999999544666899999999999999987632 1111111
Q ss_pred hhhhHh-hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeE
Q 041325 296 LVQTLE-KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLL 372 (450)
Q Consensus 296 ~~~~~~-~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 372 (450)
....+. ++...|.+++.++.|..|++|+..+.|++||.++++.+ ..+.+|...|.++..+ |..+
T Consensus 162 t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki-------------mkLrGHTdNVr~ll~~dDGt~~ 228 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI-------------MKLRGHTDNVRVLLVNDDGTRL 228 (735)
T ss_pred ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce-------------eeeeccccceEEEEEcCCCCeE
Confidence 222222 78899999999999999999999999999999998866 5777999999999987 5599
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++|.||+|++||+... +|+.++..|...|+++..+|+-. .+++|+.||.|..=||+
T Consensus 229 ls~sSDgtIrlWdLgqQ--------rCl~T~~vH~e~VWaL~~~~sf~-------------~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQ--------RCLATYIVHKEGVWALQSSPSFT-------------HVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eecCCCceEEeeecccc--------ceeeeEEeccCceEEEeeCCCcc-------------eEEecCCCCcEEecccC
Confidence 99999999999999863 89999999999999999999988 89999999999887764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-27 Score=195.45 Aligned_cols=259 Identities=19% Similarity=0.243 Sum_probs=208.3
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
......+..+..+.+.+|+ ||...|+.+.+ +...+++++.|-.|+||.......... ...|.++
T Consensus 240 d~~av~~d~~s~q~l~~~~--Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~------------~~~h~~~ 305 (506)
T KOG0289|consen 240 DKTAVLFDKPSNQILATLK--GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS------------SRPHEEP 305 (506)
T ss_pred CCceEEEecchhhhhhhcc--CcceEEEEEEeccchhheeecCCcceEEeeccccccCccc------------ccccccc
Confidence 3345567778889999999 99999999999 688899999999999999876653333 6689999
Q ss_pred eEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 130 VKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 130 v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
|+.+..++.+ |++++.||+..+.|++++.+ +......
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~----------------lt~vs~~------------------------- 344 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ----------------LTVVSDE------------------------- 344 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcE----------------EEEEeec-------------------------
Confidence 9999998655 99999999999999999843 2111100
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
...-.+++++|+|||.+|.+|..||.|+|||+.++..+..|. +|.++|..+.|+. ++.++++++.|+.|++||+|..+
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhc
Confidence 011258999999999999999999999999999999999998 7999999999995 44479999999999999998765
Q ss_pred hhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 288 LQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
...++.. ....+.++.|.+.|.+|+.++.|=.|++++-.+.+ +.....+..|.+..+++.
T Consensus 423 --------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~-----------W~~~~~~~~~sg~st~v~ 483 (506)
T KOG0289|consen 423 --------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS-----------WTEIKELADHSGLSTGVR 483 (506)
T ss_pred --------ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc-----------ceeeehhhhcccccceee
Confidence 3333322 22368999999999999999888777777755433 234456777888889999
Q ss_pred EeC--CeEEEEeCCCeEEEeeC
Q 041325 367 VVS--NLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 367 ~~~--~~l~s~~~dg~v~iwd~ 386 (450)
|.. .++++++.|..++++.+
T Consensus 484 Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccceEEeeccchhheEEeec
Confidence 974 49999999999988754
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=182.18 Aligned_cols=232 Identities=19% Similarity=0.264 Sum_probs=192.0
Q ss_pred eEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 121 VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
+.+.||..+++.+.|+.++ |++++.|.+..+|-..++ +.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG----------------er----------------------- 44 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----------------ER----------------------- 44 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCC----------------ce-----------------------
Confidence 4578999999999999544 999999999999998777 23
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc-----
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS----- 273 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----- 273 (450)
.-.+.+|.+.|.|++.+-+.+.+++|+.|.++++||+++|+++..++ ...+|..+.|++.+. +++...
T Consensus 45 ----lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn-~~l~~tD~~mg 117 (327)
T KOG0643|consen 45 ----LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGN-LILASTDKQMG 117 (327)
T ss_pred ----eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCc-EEEEEehhhcC
Confidence 33455899999999999999999999999999999999999999997 778999999998544 444332
Q ss_pred CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
..+.|.++|++...... ....+...+..+.+.++.+-|.|-+++|++|..||.|.+||+++++.+ ..
T Consensus 118 ~~~~v~~fdi~~~~~~~-~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~------------v~ 184 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDI-DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL------------VD 184 (327)
T ss_pred cceEEEEEEccCChhhh-cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee------------ee
Confidence 34689999998544211 122245555667799999999999999999999999999999998654 25
Q ss_pred cccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 354 ALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
....|...|+.+.++++ ++++++.|.+-++||+.+ ..++..+. -..||++.+++|...
T Consensus 185 s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t--------l~v~Kty~-te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 185 SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT--------LEVLKTYT-TERPVNTAAISPLLD 244 (327)
T ss_pred chhhhccccccccccCCcceEEecccCccceeeeccc--------eeeEEEee-ecccccceecccccc
Confidence 56678889999999866 999999999999999997 46666665 467999999999887
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-26 Score=184.26 Aligned_cols=275 Identities=15% Similarity=0.258 Sum_probs=209.9
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
.++.++.|++++.++...+.+.++ ++++...+..++++. .+.-.|..+.| ..+.++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl--------------------~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSL--------------------RLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeE--------------------EEEEcCCCceeeEee--cccccccEEEEecCCceEE
Confidence 355666666666666554444344 567777888999998 66666777777 566666
Q ss_pred EeeC--CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 90 GGSS--NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 90 tgs~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
.++. |.+||.-++.+.+.++. +.||...|++|+.+|-. +++++.|++|++||++..++
T Consensus 73 ~sStk~d~tIryLsl~dNkylRY------------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c------ 134 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLRY------------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC------ 134 (311)
T ss_pred EccCCCCCceEEEEeecCceEEE------------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC------
Confidence 6665 88999999999998887 88999999999999655 99999999999999997632
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC--e
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF--R 243 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~ 243 (450)
...+ +...-..++|+|+|-++|++...+.|++||++.. .
T Consensus 135 ----------qg~l-----------------------------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 135 ----------QGLL-----------------------------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG 175 (311)
T ss_pred ----------ceEE-----------------------------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence 1111 2223456889999999999998889999999864 2
Q ss_pred EEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc---eEEEEEcCCCCE
Q 041325 244 CLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA---VTALALSTDGTV 318 (450)
Q Consensus 244 ~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---i~~l~~~~~~~~ 318 (450)
+...+. .......+.|.|+|+++ .++.++..+.+++.|.-++. ....+..+... --..+|+||+++
T Consensus 176 PF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G~--------~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 176 PFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDGT--------VKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred CceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCCc--------EeeeEeeccCCCCcceeEEECCCCcE
Confidence 333332 24467889999999655 77777888999999987776 44444443322 256789999999
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 319 LYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 319 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
+++|+.||+|.+|++++++.+ ..+.+ +..++.++.|+|.+..-++.+..+.+|=..
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v-------------~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKV-------------AVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEe-------------eEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 999999999999999998866 34444 678899999999988778888889999655
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=198.76 Aligned_cols=244 Identities=20% Similarity=0.278 Sum_probs=192.2
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
..+.+|. |..+.|+++.| +++.+++++.|+.+++|+++..+.... +.||.+.|+++.|.-..
T Consensus 210 ~~~~tLa--Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~T------------LsGHtdkVt~ak~~~~~~~ 275 (459)
T KOG0288|consen 210 ELISTLA--GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHT------------LSGHTDKVTAAKFKLSHSR 275 (459)
T ss_pred hhhhhhh--ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhh------------hcccccceeeehhhccccc
Confidence 4677887 99999999999 699999999999999999999887776 88999999999998444
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++|+.|.+|+.||+... .|..++- ....+.+|+.+
T Consensus 276 vVsgs~DRtiK~WDl~k~----------------~C~kt~l----------------------------~~S~cnDI~~~ 311 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQKA----------------YCSKTVL----------------------------PGSQCNDIVCS 311 (459)
T ss_pred eeeccccchhhhhhhhhh----------------heecccc----------------------------ccccccceEec
Confidence 999999999999999987 3333332 12245555554
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
...+++|-.|++|++||.+...+..... ..+.|+++..+++ ...+++++.|..+.+.|+++.+.... ......
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~--~sA~g~ 384 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQT--FSAEGF 384 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEE--eecccc
Confidence 5568889999999999999999988886 4569999999984 44678889999999999988762111 111111
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 377 (450)
. .....+.+.|||++.|+++|+.||.|+||++.++++.. ..........|++++|+ |..|++++.
T Consensus 385 k--~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~-----------~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 385 K--CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK-----------VLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred c--cccccceeEECCCCceeeeccCCCcEEEEEccCceEEE-----------EeccCCCCcceEEEEEcCCCchhhcccC
Confidence 1 22347889999999999999999999999999988652 11222222369999998 569999999
Q ss_pred CCeEEEee
Q 041325 378 DNTIRIWR 385 (450)
Q Consensus 378 dg~v~iwd 385 (450)
++.+.+|.
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 99999993
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=199.03 Aligned_cols=260 Identities=18% Similarity=0.267 Sum_probs=193.6
Q ss_pred CcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc
Q 041325 117 DHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN 194 (450)
Q Consensus 117 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (450)
....+.+.+|+..|.++++.+.+ |++|+.|-+|++||+....... .....+.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------~~fr~l~-------------- 210 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------RSFRQLQ-------------- 210 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------hhhhccC--------------
Confidence 34456688999999999999777 9999999999999998763210 0000110
Q ss_pred eEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-----------cccccceEEEEEee
Q 041325 195 YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-----------NAHDDAINAIVVSK 263 (450)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~v~~~~~~~ 263 (450)
......|+++.|++.|..|++.+.....+|+|-...+.....+ .+|...+++.+|+|
T Consensus 211 ------------P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP 278 (641)
T KOG0772|consen 211 ------------PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP 278 (641)
T ss_pred ------------cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc
Confidence 1234478999999999999999989999999987554443332 37888999999999
Q ss_pred cCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh--hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 264 SNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ--TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 264 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
...+.+++++.||++|+||+.+.+.+ .+.+. ...+..-.++.++|+|||++||+|+.||.|.+|+..+...-
T Consensus 279 ~~k~~FlT~s~DgtlRiWdv~~~k~q----~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-- 352 (641)
T KOG0772|consen 279 DNKEEFLTCSYDGTLRIWDVNNTKSQ----LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-- 352 (641)
T ss_pred CcccceEEecCCCcEEEEecCCchhh----eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc--
Confidence 99999999999999999999876521 11111 11234567899999999999999999999999998543210
Q ss_pred CCCCCCceeeeccccCCcc--ceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC--CcceEEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTK--AILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH--RRPVKCLTA 415 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~ 415 (450)
.....-.+|.. .|+|+.|+ +++|++-+.|+++++||++.. .+++....+- ..+-+.++|
T Consensus 353 --------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~-------kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 353 --------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF-------KKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred --------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc-------ccchhhhcCCCccCCCCcccc
Confidence 11233456766 89999998 679999999999999999974 2344433332 235678899
Q ss_pred EecCCCCCCCCCCCCceEEEEEcc------cCCcEEEEE
Q 041325 416 VVDSDYSNRNSDHSSTSFLVYSGS------LDCEIKIWQ 448 (450)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~s~~------~Dg~i~iw~ 448 (450)
+|+.+ +|+||. ..|.+.+||
T Consensus 418 SPd~k-------------li~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 418 SPDDK-------------LILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred CCCce-------------EEEecccccCCCCCceEEEEe
Confidence 99998 899987 355677766
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=203.34 Aligned_cols=286 Identities=20% Similarity=0.272 Sum_probs=209.1
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
.+.|+.+.+||.|.++|......... .........|...|..+.|.+.. |++++.|.++++||+......
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~e------e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-- 135 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLE------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-- 135 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchh------hhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee--
Confidence 67899999999999999876553311 11112356899999999999855 999999999999999987321
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 241 (450)
....+.+|.+.|.+++|.+ +...|++|+.||.|.|||++.
T Consensus 136 ---------------------------------------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 136 ---------------------------------------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ---------------------------------------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 1113558999999999999 667899999999999999864
Q ss_pred Ce--------------------EEEEee------ccccc----ceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhc
Q 041325 242 FR--------------------CLESVK------NAHDD----AINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQV 290 (450)
Q Consensus 242 ~~--------------------~~~~~~------~~~~~----~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~ 290 (450)
.. ...... ..+.. .|+.+.|- ++..|++++. |+.|+|||++......
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeeccccccc
Confidence 22 000000 02222 34455555 5557888877 9999999999876443
Q ss_pred cccchhhhhHhhc---ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc----eE
Q 041325 291 NKKHSLVQTLEKH---KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA----IL 363 (450)
Q Consensus 291 ~~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~ 363 (450)
.........+..+ ...+.++.....|.+|++.+.|+.|+.|++.+...- +...+.++... -.
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-----------P~~~~sg~~~~sf~vks 323 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-----------PVAEFSGKLNSSFYVKS 323 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-----------chhhccCcccceeeeee
Confidence 3333333333333 456788888888999999999999999999864321 22333333221 14
Q ss_pred EEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 364 CLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
++.+++.++++|+.|...++|.+.+. ......+.+|...|++++|.|.... -++|+++|..
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~-------e~~~~~l~Ght~eVt~V~w~pS~~t------------~v~TcSdD~~ 384 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSP-------EAPPALLLGHTREVTTVRWLPSATT------------PVATCSDDFR 384 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCc-------cCChhhhhCcceEEEEEeeccccCC------------CceeeccCcc
Confidence 55666779999999999999999874 3556778899999999999987653 4888899999
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
++||++
T Consensus 385 ~kiW~l 390 (720)
T KOG0321|consen 385 VKIWRL 390 (720)
T ss_pred eEEEec
Confidence 999987
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=201.24 Aligned_cols=236 Identities=24% Similarity=0.441 Sum_probs=200.8
Q ss_pred EEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 122 VATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
.+.+|...|..+++.++. +++++.||++++|+-..++- +
T Consensus 9 ~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~----------------l------------------------ 48 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQY----------------L------------------------ 48 (745)
T ss_pred EeccCccchheeEecCCeEEeecCCCCceeeeeccCccc----------------c------------------------
Confidence 477999999999998777 99999999999999866521 1
Q ss_pred cceeeeecCCCceEE-EEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 201 HKKCTWVHHVDTVSA-LALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
....+.+|.+-|.. +++-+ ++-.+++|+.|.+|.+|...+..++..+. +|+..|.++... .+..+++|+.|.++
T Consensus 49 -~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~--~~~~~iSgSWD~Ta 124 (745)
T KOG0301|consen 49 -ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIG--EDGTLISGSWDSTA 124 (745)
T ss_pred -cceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-ccccceeeeecC--CcCceEecccccce
Confidence 11122345566655 77775 55569999999999999999999999999 999999999977 45569999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
++|.... +...+.+|...|+.++.-|++ .+++|+.|..|++|.-.+ ....+.+|
T Consensus 125 kvW~~~~----------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~---------------~l~tf~gH 178 (745)
T KOG0301|consen 125 KVWRIGE----------LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT---------------LLKTFSGH 178 (745)
T ss_pred EEecchh----------hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc---------------hhhhhccc
Confidence 9997532 566789999999999999887 899999999999998743 34789999
Q ss_pred ccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 359 TKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 359 ~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
...|..+++-++ .+++++.||.|++|++.. +++..+.+|+.-|.++....++. .++|
T Consensus 179 tD~VRgL~vl~~~~flScsNDg~Ir~w~~~g---------e~l~~~~ghtn~vYsis~~~~~~-------------~Ivs 236 (745)
T KOG0301|consen 179 TDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG---------EVLLEMHGHTNFVYSISMALSDG-------------LIVS 236 (745)
T ss_pred hhheeeeEEecCCCeEeecCCceEEEEeccC---------ceeeeeeccceEEEEEEecCCCC-------------eEEE
Confidence 999999999876 999999999999999953 78999999999999999777777 8999
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
+|+|++++||+.
T Consensus 237 ~gEDrtlriW~~ 248 (745)
T KOG0301|consen 237 TGEDRTLRIWKK 248 (745)
T ss_pred ecCCceEEEeec
Confidence 999999999985
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-24 Score=192.23 Aligned_cols=285 Identities=18% Similarity=0.253 Sum_probs=220.5
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEec-CCCceEEEEEeCCe-EEEEeCCCeE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATG-NGDAVKSLVVLGDK-LFSAHQDHKI 149 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~-l~s~~~dg~i 149 (450)
-..+|+||+| +.+.||.+-.||.|.||++...-+... .+.+ ....|.+|+|++.+ |++.+.+|.|
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~-----------vi~g~~drsIE~L~W~e~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP-----------VIHGPEDRSIESLAWAEGGRLFSSGLSGSI 92 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE-----------EEecCCCCceeeEEEccCCeEEeecCCceE
Confidence 4678999999 678899999999999999987543332 2333 45689999999554 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.-||+.+.+.. ..+....+.|.+++.+|.++.++.|+
T Consensus 93 ~EwDl~~lk~~-------------------------------------------~~~d~~gg~IWsiai~p~~~~l~Igc 129 (691)
T KOG2048|consen 93 TEWDLHTLKQK-------------------------------------------YNIDSNGGAIWSIAINPENTILAIGC 129 (691)
T ss_pred EEEecccCcee-------------------------------------------EEecCCCcceeEEEeCCccceEEeec
Confidence 99999988431 22234566899999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 230 WDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
.||.+..++...++...... ...++.+.++.|+|+ ...+++|+.||.|++||...+.............-+....-|+
T Consensus 130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred CCceEEEEecCCceEEEEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 99988888887766543322 134689999999973 3369999999999999998766221111111111112345688
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 386 (450)
++.|-.++ .|++|...|+|.+||...+..+ +....|...|.|++.. ++++++++.|+.|..|..
T Consensus 209 Sv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi-------------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 209 SVLFLRDS-TIASGDSAGTVTFWDSIFGTLI-------------QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred EEEEeecC-cEEEecCCceEEEEcccCcchh-------------hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 88888664 7999999999999999988755 7788899999999997 459999999999999988
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
... ...+........|...|.+++..++ .+++||.|..+.+
T Consensus 275 ~~~----~~~wv~~~~r~~h~hdvrs~av~~~---------------~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 275 TTN----KSEWVINSRRDLHAHDVRSMAVIEN---------------ALISGGRDFTLAI 315 (691)
T ss_pred cCC----ccceeeeccccCCcccceeeeeecc---------------eEEecceeeEEEE
Confidence 765 2235566667889999999998877 6999999988765
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=179.25 Aligned_cols=241 Identities=19% Similarity=0.237 Sum_probs=179.2
Q ss_pred cCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 125 GNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
...+.|.+|+|+|.. +++++.||+||+|+++.... .
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----------------------------------------~ 63 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----------------------------------------L 63 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc-----------------------------------------c
Confidence 456799999999833 66899999999999987411 0
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC-cEEEEEcCCCcEEE
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND-GFVYTGSADTKIKV 280 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~v 280 (450)
.......|.++|.+++|+.+|..+++|+-|+.+++||+.+++.. .+. .|..+|..+.|.+... ..|++|+.|++|+.
T Consensus 64 ~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf 141 (347)
T KOG0647|consen 64 VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-QVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF 141 (347)
T ss_pred cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee-eee-ecccceeEEEEecCCCcceeEecccccceee
Confidence 00122358999999999999999999999999999999999554 444 6999999999986333 25899999999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
||.+... ++..+. ..+.+.++.. -..+++++..+..|.+|+++++... .......-.-
T Consensus 142 WD~R~~~--------pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te-----------~k~~~SpLk~ 199 (347)
T KOG0647|consen 142 WDTRSSN--------PVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTE-----------FKRIESPLKW 199 (347)
T ss_pred cccCCCC--------eeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcch-----------hhhhcCcccc
Confidence 9997655 555544 4456666655 3468888999999999999865422 1111111223
Q ss_pred ceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC---------cceEEEEEEecCCCCCCCCCCC
Q 041325 361 AILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR---------RPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 361 ~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
.+.|++.. .+..+.|+.+|++.|..+..+.. +.-..++.|. -.|++|+|+|...
T Consensus 200 Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg--------- 264 (347)
T KOG0647|consen 200 QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG--------- 264 (347)
T ss_pred eeeEEEEEecCCceEeeeecceEEEEecCCCCc------cCceeEEEeccCCCCCCceEEecceEeecccc---------
Confidence 35566654 45669999999999999887422 2222333343 3689999999888
Q ss_pred CceEEEEEcccCCcEEEEEe
Q 041325 430 STSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+|+|.||++.+||=
T Consensus 265 ----tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 265 ----TLVTAGSDGTFSFWDK 280 (347)
T ss_pred ----eEEEecCCceEEEecc
Confidence 8999999999999983
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=184.33 Aligned_cols=291 Identities=14% Similarity=0.268 Sum_probs=208.6
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC----CeEEEEeCCCeEEEEEcCCCceeE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG----DKLFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
..+|++-..|.|++||..+++.... +.++...++.++|.. ..+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-
Confidence 6788899999999999999887776 778888888898864 44999999999999999987321
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC-CceEEEEEccCCCEEEEEe----CCCcEEE
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV-DTVSALALSSDGSLLYSTS----WDRTFKI 236 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~----~dg~i~i 236 (450)
....+..+. .+..+++.+.+++.+++|. .+-.|.+
T Consensus 108 ----------------------------------------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~l 147 (376)
T KOG1188|consen 108 ----------------------------------------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVL 147 (376)
T ss_pred ----------------------------------------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEE
Confidence 111122233 4667788777888888875 4678999
Q ss_pred EecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC
Q 041325 237 WRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD 315 (450)
Q Consensus 237 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 315 (450)
||++..+. +..+...|...|+++.|+|.+.++|++|+.||.|.+||+.... +...+...+ .+.+.|.++.|..+
T Consensus 148 wDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~----EeDaL~~vi-N~~sSI~~igw~~~ 222 (376)
T KOG1188|consen 148 WDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN----EEDALLHVI-NHGSSIHLIGWLSK 222 (376)
T ss_pred EEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc----chhhHHHhh-cccceeeeeeeecC
Confidence 99998877 7788789999999999999999999999999999999997653 333344444 57888999999987
Q ss_pred C-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeC-CCeEEEeeCCCCccc
Q 041325 316 G-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSS-DNTIRIWRRSSSVTD 392 (450)
Q Consensus 316 ~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~-dg~v~iwd~~~~~~~ 392 (450)
+ +.|.+-+..+...+|+++.+.....++.+............-..-|.+.... .+..+.++. -|...++-+.....
T Consensus 223 ~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s- 301 (376)
T KOG1188|consen 223 KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS- 301 (376)
T ss_pred CcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccc-
Confidence 6 4588889999999999998875433333221111111111222223333222 234444443 56666665542110
Q ss_pred cCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 393 HQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.........+++ |..-|.++.|...+. ++.|||.||.+.+|..
T Consensus 302 -~~~~~~~a~l~g~~~eiVR~i~~~~~~~-------------~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 302 -GSLLTEPAILQGGHEEIVRDILFDVKND-------------VLYTGGEDGLLQAWKV 345 (376)
T ss_pred -ccccCccccccCCcHHHHHHHhhhcccc-------------eeeccCCCceEEEEec
Confidence 222344555665 777888998887777 9999999999999984
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-25 Score=199.98 Aligned_cols=338 Identities=19% Similarity=0.263 Sum_probs=248.4
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE--eCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG 127 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~ 127 (450)
.+..+.+...+..+.+.+|+ ...+.|+.++| ||+ .+|+|+..|.+-+||++..+.... ....|.
T Consensus 222 ~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v-----------~~nah~ 288 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV-----------TRNAHY 288 (910)
T ss_pred cCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee-----------eecccc
Confidence 34566777888889999998 33599999999 765 566777789999999998886655 344788
Q ss_pred CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCcee--E-EeccCcccccceeeeeec--------cCCCc----------
Q 041325 128 DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSA--Y-YSTSGKLKNKYYERIATL--------PTLND---------- 184 (450)
Q Consensus 128 ~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--------~~~~~---------- 184 (450)
+.|....|.+.. +++++.|+.+++|=.+++... . ....+...+. .++... +...+
T Consensus 289 ~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp--~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 289 GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP--SCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc--hheeeeccCcEEEEecccCcchhhhhhhH
Confidence 899999999877 899999999999977744321 0 0000000000 000000 00000
Q ss_pred ----------------------------------------------ceeEeeecCceEEEeecceeee----ecC-----
Q 041325 185 ----------------------------------------------RFTKCFLANNYVQVRRHKKCTW----VHH----- 209 (450)
Q Consensus 185 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~----- 209 (450)
....+-........|+...... ..+
T Consensus 367 e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~ 446 (910)
T KOG1539|consen 367 ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK 446 (910)
T ss_pred HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc
Confidence 0000001111111122111111 122
Q ss_pred -CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe--ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 210 -VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV--KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 210 -~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
...+++++.++.|++.+.|+..|.|-+|++.+|.....+ ...|..+|..++... -+..+++++.+|.+.+||....
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCc
Confidence 257889999999999999999999999999999888888 247999999999985 3447999999999999998654
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
. ++..+. -...+..+.++.....++.+..|-.|+++|..+.+.+ +.+.+|...|++++
T Consensus 526 ~--------l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-------------R~f~gh~nritd~~ 583 (910)
T KOG1539|consen 526 V--------LKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-------------REFWGHGNRITDMT 583 (910)
T ss_pred c--------eeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-------------HHhhccccceeeeE
Confidence 4 444443 4567888999988899999999999999999987644 88999999999999
Q ss_pred EeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC-Cc
Q 041325 367 VVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD-CE 443 (450)
Q Consensus 367 ~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~ 443 (450)
|++ ++|++++.|++|++||+.++ .++..+. -..+++++.|+|+++ +|||...| .-
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~--------~lID~~~-vd~~~~sls~SPngD-------------~LAT~Hvd~~g 641 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTG--------TLIDGLL-VDSPCTSLSFSPNGD-------------FLATVHVDQNG 641 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCc--------ceeeeEe-cCCcceeeEECCCCC-------------EEEEEEecCce
Confidence 985 49999999999999999985 4555443 467899999999999 99999998 66
Q ss_pred EEEEE
Q 041325 444 IKIWQ 448 (450)
Q Consensus 444 i~iw~ 448 (450)
|++|-
T Consensus 642 IylWs 646 (910)
T KOG1539|consen 642 IYLWS 646 (910)
T ss_pred EEEEE
Confidence 99995
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=183.79 Aligned_cols=271 Identities=19% Similarity=0.339 Sum_probs=215.1
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCC------CCC---------ce-eeee--
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRD------PNN---------YV-NITS-- 112 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~------~~~---------~~-~~~~-- 112 (450)
-...+++..++.|+.++. ||.+.|+++.| .+.+++|++.|++-.||... ... .. ...+
T Consensus 170 hTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~ 247 (481)
T KOG0300|consen 170 HTARIWSLESGACLATYT--GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN 247 (481)
T ss_pred cceeEEeeccccceeeec--ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence 334578889999999999 99999999999 68999999999999999731 100 00 0000
Q ss_pred c--------C--CCCcceeEEecCCCceEEEEEeC--CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeecc
Q 041325 113 T--------D--VGDHANVVATGNGDAVKSLVVLG--DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLP 180 (450)
Q Consensus 113 ~--------~--~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (450)
. . .-..+...+.+|.+.|.+..|.. +.+++++.|.+..+||++++.
T Consensus 248 ~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---------------------- 305 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE---------------------- 305 (481)
T ss_pred cccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc----------------------
Confidence 0 0 01124566889999999999974 449999999999999999983
Q ss_pred CCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-EEEEeecccccceEEE
Q 041325 181 TLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-CLESVKNAHDDAINAI 259 (450)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~ 259 (450)
....+.+|....+.++-+|..+++++.+.|.+.++||++..- .+..|+ +|...|+++
T Consensus 306 ---------------------~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~ 363 (481)
T KOG0300|consen 306 ---------------------VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSV 363 (481)
T ss_pred ---------------------eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEE
Confidence 223445799999999999999999999999999999998543 455566 999999999
Q ss_pred EEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 260 VVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 260 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.|. .+..+++|+.|.+|++||+++.. .++.++. ..++++.++.+..+..|+.-..+..|++||+...+..
T Consensus 364 vF~--~dd~vVSgSDDrTvKvWdLrNMR-------splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 364 VFN--TDDRVVSGSDDRTVKVWDLRNMR-------SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred EEe--cCCceeecCCCceEEEeeecccc-------Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 999 45579999999999999998754 1344443 5678999999988889999999999999999854422
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEeCC----eEEEEeCCCeEEEeeCCC
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVSN----LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~s~~~dg~v~iwd~~~ 388 (450)
..+...-.+|...|+|.+|..+ -|++++.|..+.-|+++.
T Consensus 434 ---------RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 434 ---------RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ---------cCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 2234466789999999999854 788999999999999875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=186.11 Aligned_cols=305 Identities=18% Similarity=0.230 Sum_probs=215.8
Q ss_pred ceeeeEEeecCCCcceEEEEE----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 63 HQCSATLKVKGNSSYIPSLAI----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.......+ -|..+|++++| +.+++|+|..-|+|-+||+.+.+. .......+..|.++|.+|.|+|.
T Consensus 176 ~~~~~v~k--v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 176 YRILNVAK--VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred ceecceeE--ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------ccCceEEeccCCccccceEecCC
Confidence 34455555 78999999999 358999999999999999973331 12234567899999999999976
Q ss_pred e---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 139 K---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 139 ~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
. +++.+.||+|++-|++..... .+... .........
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e--------------~v~s~---------------------------~~d~~~fs~ 284 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISE--------------EVLSL---------------------------DTDNIWFSS 284 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhH--------------HHhhc---------------------------Cccceeeee
Confidence 6 999999999999999987321 11110 012235677
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+.|+.+...++.+..=|...+||.++... ...+. .|+..|.+|+++|....++++++.|++++|||++.-. ...
T Consensus 285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~----~K~ 359 (498)
T KOG4328|consen 285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR----GKA 359 (498)
T ss_pred ccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchheeecccCcceeeeehhhhc----CCC
Confidence 88888777788888778999999998766 44444 7888999999999999899999999999999998754 222
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 372 (450)
.+.-....|...|.+..|||.+-.|++.+.|..|+|||.. ++-....+... ..-....+..-......|+++ ++
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss---~~sa~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS---CISAKDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc---cccccCCccce-eeccCcccccccchhheeCCCccEE
Confidence 1233334699999999999988789999999999999984 11000000000 000111111122344567755 88
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc-ceEEE-EEEecCCCCCCCCCCCCceEEEEEc-ccCCcEEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR-PVKCL-TAVVDSDYSNRNSDHSSTSFLVYSG-SLDCEIKIWQ 448 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~-~v~~l-~~~~~~~~~~~~~~~~~~~~~l~s~-~~Dg~i~iw~ 448 (450)
++|-.-..|-|+|-+.+ +.+..+..... .|.++ .|+|-+. .+++| +.-|.|+||-
T Consensus 436 ~vg~~~r~IDv~~~~~~--------q~v~el~~P~~~tI~~vn~~HP~~~-------------~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGG--------QMVCELHDPESSTIPSVNEFHPMRD-------------TLAAGGNSSGKIYVFT 493 (498)
T ss_pred EEeccCcceeEEcCCCC--------EEeeeccCccccccccceeeccccc-------------ceeccCCccceEEEEe
Confidence 99999999999997754 55555544333 45544 7888776 45554 4678888885
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=188.08 Aligned_cols=281 Identities=20% Similarity=0.318 Sum_probs=207.7
Q ss_pred EEEeeCC-CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEe-CCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSN-GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAH-QDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~ 165 (450)
+.+++.| ..+.+||+.++........... ..+|. .-+..+.+++++. ....|.+|.+......
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~------a~~~s----l~~l~~~yllsaq~~rp~l~vw~i~k~~~~----- 74 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYL------AQAAS----LTALNNEYLLSAQLKRPLLHVWEILKKDQV----- 74 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEEecCccc------ccchh----hhhhchhheeeecccCccccccccCchhhh-----
Confidence 3344555 4599999999986655322100 11111 1112344555554 4557899998766321
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
. ...--.++|.+++-+|+|.+++.|+..|.|++|.+.+|..+
T Consensus 75 -----------~---------------------------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL 116 (476)
T KOG0646|consen 75 -----------V---------------------------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL 116 (476)
T ss_pred -----------h---------------------------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHH
Confidence 0 00113458999999999999999989999999999999999
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc-ccchhhhhHhhcccceEEEEEcCC--CCEEEEe
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN-KKHSLVQTLEKHKSAVTALALSTD--GTVLYSG 322 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~g 322 (450)
..+. .|-..|+++.|+. ++.+|++|+.||.|.+|++..--.... ....+...+..|.-+|+.+...+. ..+|+++
T Consensus 117 ~v~~-aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 117 NVLS-AHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred HHHH-hhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence 9886 9999999999996 444899999999999998754321111 245577888999999999998764 3589999
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCcccc-------
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDH------- 393 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~------- 393 (450)
+.|.++++||+..+..+. . ......+.+++.++ ..++.|+.+|.|.+.++.......
T Consensus 195 S~D~t~k~wdlS~g~LLl-------------t-i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLL-------------T-ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred cCCceEEEEEeccceeeE-------------E-EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccc
Confidence 999999999999987662 1 12345678888874 599999999999998876543111
Q ss_pred -CCCceeEEEecCCCc--ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 394 -QKGYSCLAVLEGHRR--PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 394 -~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.........+.+|.+ .|+|++.+.|+. +|++|+.||.|+|||+.
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-------------lLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGT-------------LLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCcc-------------EEEeeCCCCCEEEEecc
Confidence 122345667889988 999999999999 99999999999999973
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-27 Score=210.77 Aligned_cols=241 Identities=23% Similarity=0.420 Sum_probs=205.2
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
++....+-.+++|+... +..|...|.++..- ...+++|+.|-.+-+|.+....
T Consensus 7 ~m~~~~~t~Lr~~~~~~------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------- 61 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------- 61 (825)
T ss_pred cceeeeeeccccccchh------------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------
Confidence 34445556677887654 33677788887763 2339999999999999987651
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
....+.+|..+|.++.|++...+|++|+.+|+|++||+++.+.+
T Consensus 62 ------------------------------------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 62 ------------------------------------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred ------------------------------------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 12235589999999999999999999999999999999999999
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
+.+. +|...+.++.|+|... +.+.|+.|+.+.+||.+... +...+.+|...+..+.|+|+|++++.|++|
T Consensus 106 rtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~G--------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 106 RTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKG--------CSHTYKSHTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred hhhh-ccccCcceeeeccceE-EeccccccccceehhhhccC--------ceeeecCCcceeEEEeecCCCceeeccCCc
Confidence 9888 8999999999999544 78999999999999997655 778888899999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
..++|||+..|+.+ ..+..|...+.++.|++. ++++|+.|++|++||+++ ++.+...
T Consensus 176 ~tvki~d~~agk~~-------------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet--------fe~I~s~ 234 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLS-------------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET--------FEVISSG 234 (825)
T ss_pred ceeeeecccccccc-------------cccccccccccccccCchhhhhccCCCCceeeeeccce--------eEEeecc
Confidence 99999999988755 688899999999999865 889999999999999996 4677777
Q ss_pred cCCCcceEEEEEEecCC
Q 041325 404 EGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~~ 420 (450)
+.....|.+++|.+++.
T Consensus 235 ~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGK 251 (825)
T ss_pred CCccCCceeeeecCCce
Confidence 77788999999999998
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-26 Score=183.38 Aligned_cols=298 Identities=17% Similarity=0.290 Sum_probs=219.5
Q ss_pred cCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCc-cceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 14 NKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAAS-EHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 14 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
-+-+.|+|++...+.++.+.++....... .++-...........+ ....+++|- .|.+.|+++.| ....|++
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildver---mlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVER---MLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhh---hhhhcchhhhccCCcccCCceEeehh--hccCcccceeecchhheEEe
Confidence 35678999999999999999887532211 1111111111111111 135678888 99999999999 6899999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
|+.|++|+++|+......+..+ ......+|.++.|+|.+ |+.|..-.++++||+++-+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K----------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q---------- 249 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFK----------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ---------- 249 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHH----------HhhccceeeeEeecCCCceEEEecCCCceeEEecccee----------
Confidence 9999999999987654332211 12344689999999776 8888888999999999873
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
|....... ..|.+.|+++.+++.+++.++++.||.|++||--+++|+..+
T Consensus 250 ------cfvsanPd------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~ 299 (430)
T KOG0640|consen 250 ------CFVSANPD------------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI 299 (430)
T ss_pred ------EeeecCcc------------------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence 33222211 159999999999999999999999999999999999999999
Q ss_pred eccccc-ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc-----ccceEEEEEcCCCCEEEEe
Q 041325 249 KNAHDD-AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH-----KSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 249 ~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~i~~l~~~~~~~~l~~g 322 (450)
...|.+ .|.+..|.. +..++++.+.|..+++|.+.++. .+..+.+. ..--+...|+....+++.-
T Consensus 300 ~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R--------~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 300 GNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGR--------MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred HhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCc--------eEEEEecCCcccchhhhhhhhhcCccceEEcc
Confidence 877765 678888887 45589999999999999998876 33332221 1112334577667777665
Q ss_pred eC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 323 AC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 323 ~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
.+ .+.+.-||.++.... .....+|++.+..+.-++. -+++|+.|..+|+|--+
T Consensus 371 DEas~slcsWdaRtadr~------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRV------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccCceeeccccchhhh------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 54 577999999987543 1334689999999988865 89999999999999654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=175.55 Aligned_cols=238 Identities=19% Similarity=0.255 Sum_probs=180.7
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
....|.++.|++.. |++++.||++++||+..... .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----------------~--------------------------- 48 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----------------K--------------------------- 48 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----------------h---------------------------
Confidence 35689999999554 88888999999999987621 0
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
....|..++.+++|.++ ..+++|+.||.|+.+|+.++...... .|..++.+|...+ ..+.+++|+.|+.|++||.
T Consensus 49 -~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~ 123 (323)
T KOG1036|consen 49 -LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSY-EVGCVISGSWDKTIKFWDP 123 (323)
T ss_pred -hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec--cCCCceEEEEeec-cCCeEEEcccCccEEEEec
Confidence 11148889999999874 46899999999999999988766555 5999999999997 6669999999999999999
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+... ....+. ....|.++.. .|+.|++|+.|..+.+||+++..... ...-..-...+.
T Consensus 124 R~~~--------~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-----------q~reS~lkyqtR 181 (323)
T KOG1036|consen 124 RNKV--------VVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-----------QRRESSLKYQTR 181 (323)
T ss_pred cccc--------cccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-----------hhccccceeEEE
Confidence 7633 333333 3347888777 47899999999999999999865331 112222345567
Q ss_pred EEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC---------cceEEEEEEecCCCCCCCCCCCCce
Q 041325 364 CLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR---------RPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 364 ~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
|++..+ .-.++++-||+|.+=.++.... .......++.|. -+|++|+|+|-..
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~----~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~------------ 245 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEE----AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG------------ 245 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchH----HhhhceeEEeeecccCCceEEEEeceeEeccccc------------
Confidence 777765 4788899999998866664311 112333445553 3899999999988
Q ss_pred EEEEEcccCCcEEEEEeC
Q 041325 433 FLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l~ 450 (450)
.|+|||.||.|.+||+.
T Consensus 246 -tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 246 -TFATGGSDGIVNIWDLF 262 (323)
T ss_pred -eEEecCCCceEEEccCc
Confidence 89999999999999973
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=186.09 Aligned_cols=252 Identities=16% Similarity=0.282 Sum_probs=200.8
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
....+.++......++.+|+ +|.+.|..|+++...+++++.|.+|+.|.++.. .... + .....+
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~--AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~-p~~t------------i-lg~s~~ 150 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFK--AHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP-PLHT------------I-LGKSVY 150 (433)
T ss_pred cCceEEEEehhhhhhhheee--cccCceeeEEecccceEEecCCcceeeeeccCC-ccee------------e-eccccc
Confidence 34556678888899999999 999999999998899999999999999998763 2222 1 122355
Q ss_pred EEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
..+.-+ .+.++|+|+ .|.|||..... +...+..
T Consensus 151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-------------------------------------------Pv~smsw 185 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE--QIDIWDEQRDN-------------------------------------------PVSSMSW 185 (433)
T ss_pred cccccccccccccccCc--eeeecccccCC-------------------------------------------ccceeec
Confidence 556554 333888877 59999998762 2333334
Q ss_pred CCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 209 HVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 209 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
-.+.|.++.|+| ....|++++.|+.|.+||+++..++..+. ..-.-+.|+|+| +...+++|..|..++.||++.-+
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCc-cccceeeccccccceehhhhhhc
Confidence 566899999999 45677788899999999999999998886 566779999999 55568999999999999997654
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC---ccceEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH---TKAILC 364 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~ 364 (450)
.++....+|.+.|.++.|+|.|+-+++|+.|.+|+||..+.+.- .-..| -..|.|
T Consensus 263 -------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S---------------RdiYhtkRMq~V~~ 320 (433)
T KOG0268|consen 263 -------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS---------------RDIYHTKRMQHVFC 320 (433)
T ss_pred -------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc---------------hhhhhHhhhheeeE
Confidence 36778889999999999999999999999999999999986531 11112 245899
Q ss_pred EEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 365 LAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 365 ~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
+.|+- .++++||.|+.|++|....
T Consensus 321 Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 321 VKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEEeccccEEEecCCCcceeeeecch
Confidence 99984 4999999999999998764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=196.98 Aligned_cols=267 Identities=16% Similarity=0.260 Sum_probs=207.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCC-ceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKI 149 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i 149 (450)
+|...-+.++| +|++|++++.||.|++|+..... .... +.-++..|.+++...+.|++|+.+++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t------------i~~~g~~v~~ia~~s~~f~~~s~~~tv 78 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET------------IDISGELVSSIACYSNHFLTGSEQNTV 78 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch------------hhccCceeEEEeecccceEEeeccceE
Confidence 79999999999 79999999999999999876552 1111 122778999999999999999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+|.+.+++.. -.+...+-++++++++.+|++++.|+
T Consensus 79 ~~y~fps~~~~-------------------------------------------~iL~Rftlp~r~~~v~g~g~~iaags 115 (933)
T KOG1274|consen 79 LRYKFPSGEED-------------------------------------------TILARFTLPIRDLAVSGSGKMIAAGS 115 (933)
T ss_pred EEeeCCCCCcc-------------------------------------------ceeeeeeccceEEEEecCCcEEEeec
Confidence 99999988421 01112334799999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh-cccceE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVT 308 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~ 308 (450)
.|-.|++-++.+......++ +|..+|.++.++| .+.+|++.+.||.|++||+.++.+....... ...... ....+.
T Consensus 116 dD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v-~k~n~~~~s~i~~ 192 (933)
T KOG1274|consen 116 DDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGV-DKDNEFILSRICT 192 (933)
T ss_pred CceeEEEEeccccchheeec-ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccC-Cccccccccceee
Confidence 99999999999998888888 9999999999999 5559999999999999999877632111100 001111 145677
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 386 (450)
.++|+|+|..++..+.|+.|++|+.......+ ......+...+.++.|+ |.|||+++.||.|.|||.
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f-----------~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF-----------KLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceehe-----------eecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 89999998888888999999999998776542 22233344558888888 559999999999999999
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
++- .. ......|.+++|.|+..
T Consensus 262 ~t~--------~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 262 DTH--------ER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred ccc--------hh----ccccceeEEEecCCCCC
Confidence 851 10 22346788888888876
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-27 Score=208.07 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=185.2
Q ss_pred EEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe---CCeEEEEeCCCeEEEE
Q 041325 79 PSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL---GDKLFSAHQDHKIRVW 152 (450)
Q Consensus 79 ~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iw 152 (450)
..|.| +.++|||++..|.|.+||+...... .....+..|...++++.|+ |+.|++|+.||+|++|
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn---------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~ 161 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN---------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCW 161 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccc---------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEE
Confidence 34455 6899999999999999999862100 1112377999999999998 5559999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWD 231 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 231 (450)
|++..+. ...+.+....|+++.|+| .+..|+++.+.
T Consensus 162 DlR~~~S-------------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 162 DLRSKKS-------------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred eeecccc-------------------------------------------cccccccchhhhceeeccCCCceEEEecCC
Confidence 9998732 122334566899999999 78899999999
Q ss_pred CcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 232 RTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 232 g~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
|.+++||++.... ...+. +|.++|.++.|+| +..+|++|+.|+.|+|||+.+.+. ..+.++ ....++.++
T Consensus 199 G~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~------~~~~tI-nTiapv~rV 269 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRA------KPKHTI-NTIAPVGRV 269 (839)
T ss_pred ceEEEeeccCchhHHHHhh-cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCc------cceeEE-eecceeeee
Confidence 9999999997654 34444 9999999999999 677999999999999999976441 122222 245789999
Q ss_pred EEcCCCC-EEEEeeC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEEEe
Q 041325 311 ALSTDGT-VLYSGAC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRIW 384 (450)
Q Consensus 311 ~~~~~~~-~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iw 384 (450)
.|-|+.. .|++++. |-.|+|||++.. ..+...+..|...++.++|.. ..+.+++.||+|..-
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRP------------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccc------------cccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 9999665 4555553 788999999843 235578889999999999984 389999999998766
Q ss_pred eCCC
Q 041325 385 RRSS 388 (450)
Q Consensus 385 d~~~ 388 (450)
.+++
T Consensus 338 ~~kn 341 (839)
T KOG0269|consen 338 LFKN 341 (839)
T ss_pred hhhc
Confidence 5554
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=188.43 Aligned_cols=234 Identities=24% Similarity=0.365 Sum_probs=187.7
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
--.++|.|++- +|.+|+.|+..|.+++|.+.+|.++.. +.+|-..|+++.|++|+ |+||+.||.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV------------LSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH------------HHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 34678999988 689999998999999999999998877 67999999999999887 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSLLY 226 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 226 (450)
|.+|.+..--. ..+.. .-.+...+.+|.-+|+++...+. ..+++
T Consensus 147 V~vW~l~~lv~------------------a~~~~----------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 147 VLVWLLTDLVS------------------ADNDH----------------SVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred EEEEEEEeecc------------------cccCC----------------CccceeeeccCcceeEEEEecCCCccceEE
Confidence 99999865411 00000 11345567789999999998764 46899
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc--------cccchhhh
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV--------NKKHSLVQ 298 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--------~~~~~~~~ 298 (450)
+++.|.++++||+..+..+..+. ....+.+++..| .+..+++|+.+|.|.+.++..-.-+. ........
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EecCCceEEEEEeccceeeEEEe--cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 99999999999999999998886 788999999999 55589999999999998875533111 12223455
Q ss_pred hHhhccc--ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 299 TLEKHKS--AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 299 ~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
.+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.+++ +.+....++|+.+.+.
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i-------------Rtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI-------------RTLQTSKGPVTNLQIN 328 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH-------------HHHhhhccccceeEee
Confidence 5677877 9999999999999999999999999999988766 4444456777777774
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=188.54 Aligned_cols=252 Identities=17% Similarity=0.251 Sum_probs=184.9
Q ss_pred CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 137 GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 137 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
++++|.|+.|..|.|||+.-....... ..+- ....+.....+.......+|++.|.++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~-------------~~LG---------s~~sk~~~k~~k~~~~~~gHTdavl~L 249 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPC-------------VTLG---------SKASKKKKKKGKRSNSASGHTDAVLAL 249 (463)
T ss_pred cceEEEeccCceeEEeccccccccccc-------------eeec---------hhhhhhhhhhcccccccccchHHHHHH
Confidence 345999999999999999755221100 0000 000000011112223345799999999
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 217 ALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 217 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
+|+. ..+.|++|+.|.+|++||+.++++...+. .|...|.++.|+|....+|++|+.|++|.+.|.|...
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-------- 320 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-------- 320 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--------
Confidence 9988 46789999999999999999999999998 8999999999999888899999999999999997532
Q ss_pred hhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCe
Q 041325 296 LVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNL 371 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~ 371 (450)
.....-...+.|-.++|.|. ...++++..||.|+-+|++... .+...++.|..+|.+++++ +.+
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~------------~~vwt~~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG------------KPVWTLKAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC------------CceeEEEeccCCcceEEecCCCCcc
Confidence 11122224578999999984 4577888899999999999752 2347889999999999998 569
Q ss_pred EEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++++.|+.|++|++.... .+.+....-.-+...|.++.|+-.+ .++.||..+.++|||+
T Consensus 389 l~t~s~d~~Vklw~~~~~~------~~~v~~~~~~~~rl~c~~~~~~~a~------------~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDS------PKSVKEHSFKLGRLHCFALDPDVAF------------TLAFGGEKAVLRVWDI 448 (463)
T ss_pred eeeccccceEEEEeecCCC------CcccccccccccceeecccCCCcce------------EEEecCccceEEEeec
Confidence 9999999999999987531 1111111111223566677777664 8999999999999997
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-24 Score=180.64 Aligned_cols=288 Identities=19% Similarity=0.288 Sum_probs=214.2
Q ss_pred CCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
..+........+ .....|....| |.+++++.+. |.+..|+++++.+.+.....++ .....|.|++|
T Consensus 186 dWqk~~~~~~vk--~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek--------~ekk~Vl~v~F 254 (626)
T KOG2106|consen 186 DWQKKAKLGPVK--TSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEK--------REKKFVLCVTF 254 (626)
T ss_pred hchhhhccCcce--eccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeecccc--------ccceEEEEEEE
Confidence 333334444444 55677888888 7888888876 8999999999887666433221 22357999999
Q ss_pred eCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 136 LGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 136 ~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
.+++ +++|..+|.|.||+....... .....|.+.|.
T Consensus 255 ~engdviTgDS~G~i~Iw~~~~~~~~-------------------------------------------k~~~aH~ggv~ 291 (626)
T KOG2106|consen 255 LENGDVITGDSGGNILIWSKGTNRIS-------------------------------------------KQVHAHDGGVF 291 (626)
T ss_pred cCCCCEEeecCCceEEEEeCCCceEE-------------------------------------------eEeeecCCceE
Confidence 9888 999999999999999765211 11126999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe----------------------------------------eccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV----------------------------------------KNAHDD 254 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------------------~~~~~~ 254 (450)
+++.-.+|.+|- |+.|..|..||-. .+.++.. ..+|..
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d 369 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD 369 (626)
T ss_pred EEEEecCccEee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence 999999997555 9999999999832 1111110 025667
Q ss_pred ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 255 AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 255 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
....++.+|+ ++.+++++.|+.+++|+ ..+ +... .....++.++.|+|.| .++.|+..|...+.|.+
T Consensus 370 elwgla~hps-~~q~~T~gqdk~v~lW~--~~k--------~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 370 ELWGLATHPS-KNQLLTCGQDKHVRLWN--DHK--------LEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred ceeeEEcCCC-hhheeeccCcceEEEcc--CCc--------eeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 7888888884 45899999999999999 222 1111 2245778999999999 99999999999999999
Q ss_pred CCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEE
Q 041325 335 QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412 (450)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 412 (450)
+...+ .+.....+++++.|+ |.+||.|+.|+.|++|.+..+ +.+....-+.|.++|+.
T Consensus 437 ~~~lv--------------~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~------g~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 437 TQDLV--------------TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN------GRKYSRVGKCSGSPITH 496 (626)
T ss_pred cceeE--------------EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC------CcEEEEeeeecCceeEE
Confidence 85433 222227788999998 559999999999999998854 22333333444589999
Q ss_pred EEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 413 LTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+.|++|++ ++.+-+.|-.|..|+
T Consensus 497 LDwS~Ds~-------------~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 497 LDWSSDSQ-------------FLVSNSGDYEILYWK 519 (626)
T ss_pred eeecCCCc-------------eEEeccCceEEEEEc
Confidence 99999999 999999999999993
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=187.86 Aligned_cols=242 Identities=19% Similarity=0.316 Sum_probs=183.9
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceee---eec------CCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNI---TST------DVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVW 152 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~---~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw 152 (450)
|+++|.|+.|..|.|||++=...+.. ... ...........+|+..|.+|.|+... |++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999999999999864322111 000 00111333456899999999998555 9999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWD 231 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 231 (450)
|+.+++ +.. .+..|.+.|.+++|+| ....|++|+.|
T Consensus 272 D~~~g~----------------p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D 308 (463)
T KOG0270|consen 272 DVDTGK----------------PKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYD 308 (463)
T ss_pred EcCCCC----------------cce---------------------------ehhhcCCceeEEEecCCCceEEEecccc
Confidence 999993 222 3336899999999999 67899999999
Q ss_pred CcEEEEecCCCeEE-EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 232 RTFKIWRTSDFRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 232 g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
++|.+.|.+..... ..+ ...+.|..++|.|.....++++..||.|+-+|+|... +++.+++.|..+|.++
T Consensus 309 ~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------~~vwt~~AHd~~ISgl 379 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------KPVWTLKAHDDEISGL 379 (463)
T ss_pred ceEEeeeccCccccCceE--EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-------CceeEEEeccCCcceE
Confidence 99999999853322 223 3668899999999888889999999999999998753 4788899999999999
Q ss_pred EEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeC
Q 041325 311 ALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 311 ~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~ 386 (450)
++++. -.++++++.|+.|++|++.....- ......+ .-+...|++++++ .++.|+..+.++|||+
T Consensus 380 ~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---------~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 380 SVNIQTPGLLSTASTDKVVKLWKFDVDSPK---------SVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred EecCCCCcceeeccccceEEEEeecCCCCc---------ccccccc--cccceeecccCCCcceEEEecCccceEEEeec
Confidence 99874 457899999999999999753321 0000111 1122456666655 8899999999999998
Q ss_pred CCC
Q 041325 387 SSS 389 (450)
Q Consensus 387 ~~~ 389 (450)
.+.
T Consensus 449 ~~~ 451 (463)
T KOG0270|consen 449 FTN 451 (463)
T ss_pred ccC
Confidence 864
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6e-24 Score=187.83 Aligned_cols=359 Identities=17% Similarity=0.215 Sum_probs=245.5
Q ss_pred CCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCC---EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe
Q 041325 50 SSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGK---LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT 124 (450)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~---~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 124 (450)
.....+....+.....+.++. ||..+|+|+.+ +.+ ++++|+.||.|++|.++....... ..+.
T Consensus 31 Ga~~~Iav~dp~k~~i~t~l~--GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i----------~~~~ 98 (764)
T KOG1063|consen 31 GAGPAIAVADPEKILIVTTLD--GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI----------YTIQ 98 (764)
T ss_pred cCCceEEEeCcccceeEEecc--CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE----------Eeec
Confidence 333444445544455666777 99999999999 444 899999999999999985444333 2244
Q ss_pred cCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCc-ccccceeeeeeccCCCcceeEeeecCceEEEee---
Q 041325 125 GNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGK-LKNKYYERIATLPTLNDRFTKCFLANNYVQVRR--- 200 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (450)
+|...+.|+.-......+.+.|+++.+||.+..+......... .+....-++..++..+....++...+..+.+..
T Consensus 99 g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~ 178 (764)
T KOG1063|consen 99 GHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSA 178 (764)
T ss_pred CcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCC
Confidence 5655555444333333334789999999995554211111111 111222455555523333333333444444433
Q ss_pred ---cceeeeecCCCceEEEEEccCC---CEEEEEeCCCcEEEEecCCCe---------------------EEEE------
Q 041325 201 ---HKKCTWVHHVDTVSALALSSDG---SLLYSTSWDRTFKIWRTSDFR---------------------CLES------ 247 (450)
Q Consensus 201 ---~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~---------------------~~~~------ 247 (450)
.....+.+|.+.|.+++|...+ -+|++++.|..||||.+.-+. ....
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 3456788999999999998744 378899999999999764221 1111
Q ss_pred ---eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 248 ---VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 248 ---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
+..+|.+.|+++.|+|.. ..|++++.|.++.+|...+..-. -.....+..+.+.........|+|+++.+++-+.
T Consensus 259 ~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGi-Wv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGI-WVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred hhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccce-EEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence 113899999999999843 37999999999999987554200 0000112233344566889999999999999999
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEE
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV 402 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 402 (450)
.|..++|.... .........+.+|...|..++|+ |++|++.+.|.+-|+|-.-.. +..+..+..
T Consensus 337 ~Gg~hlWkt~d----------~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~----q~~wHEiaR 402 (764)
T KOG1063|consen 337 TGGFHLWKTKD----------KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR----QQEWHEIAR 402 (764)
T ss_pred cCcEEEEeccC----------ccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc----ccceeeecc
Confidence 99999998332 22334556788999999999999 679999999999999865521 233677777
Q ss_pred ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 403 LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 403 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+-|.-.++|++|.+... .+++|.++..+|+|+.
T Consensus 403 PQiHGyDl~c~~~vn~~~-------------~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDL-------------QFVSGADEKVLRVFEA 436 (764)
T ss_pred cccccccceeeehccCCc-------------eeeecccceeeeeecC
Confidence 888999999999999644 6999999999999874
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=182.36 Aligned_cols=269 Identities=18% Similarity=0.245 Sum_probs=196.9
Q ss_pred EEecCCCceEEEEEeCC--e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 122 VATGNGDAVKSLVVLGD--K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~--~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
...+|.+.++.+...+- . .++-+..|.|.||++...-........... .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~---------------------------~ 198 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVK---------------------------D 198 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccccc---------------------------c
Confidence 34567777777776633 2 667788999999999754211000000000 0
Q ss_pred EeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEE---EEeecccccceEEEEEeecCCcEEEEEc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCL---ESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
....+..++.+|.+.=..++|+| ....|++|.--+.|++|...++.-. ..+. +|...|..++|+|..++.|++|+
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS 277 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCS 277 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeee
Confidence 12345667778999999999999 2234788887889999999886522 2333 69999999999999999999999
Q ss_pred CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
.||.|+|||+|.+. ... .+ ..+.|.+.|+.|.|+.+..+|++|+.||+++|||+++-+.- .+..
T Consensus 278 ~DgsIrIWDiRs~~----~~~-~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~----------~pVA 341 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGP----KKA-AV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG----------QPVA 341 (440)
T ss_pred cCceEEEEEecCCC----ccc-ee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC----------Ccce
Confidence 99999999999874 111 22 23789999999999998889999999999999999965421 3456
Q ss_pred cccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc-----------CCCceeEEEecCCCcceEEEEEEecC
Q 041325 354 ALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH-----------QKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
.++.|..+|+++.|++. .|++++.|..|.+||+....... .-+.+++...+ -...+..+.|+++-
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~Qi 420 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQI 420 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCC
Confidence 78899999999999954 89999999999999987543211 01122333222 35678999999987
Q ss_pred CCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.. ++++.+.|| +.||.
T Consensus 421 PG------------~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 421 PG------------LLVSTAIDG-FNVFK 436 (440)
T ss_pred CC------------eEEEecccc-eeEEE
Confidence 75 899999999 45553
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=182.72 Aligned_cols=209 Identities=22% Similarity=0.359 Sum_probs=169.7
Q ss_pred ecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCC----------------CeEEEEeecccccceEEEEEeecCCcE
Q 041325 207 VHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSD----------------FRCLESVKNAHDDAINAIVVSKSNDGF 268 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 268 (450)
..|.+.++.+.-.+-+ .+.++=+..|.|+|||+.. .+++.++. .|+..-+.++|+|...+.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccc
Confidence 3577777777777644 4555556889999999853 34566666 788889999999988888
Q ss_pred EEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 269 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
+++|..-+.|++|...++.... -...+.+|...|-.++|+|. ...|++|+.||+|+|||++.+..-
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~-------- 293 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK-------- 293 (440)
T ss_pred cccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--------
Confidence 9999999999999988765332 23345569999999999995 468899999999999999987321
Q ss_pred ceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCC
Q 041325 348 HMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRN 425 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 425 (450)
.....+.|.+.|+.|+|+.+ +|++|+.||+++|||++. .+..+++..++.|..+|++|.|+|....
T Consensus 294 ---~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~-----~~~~~pVA~fk~Hk~pItsieW~p~e~s---- 361 (440)
T KOG0302|consen 294 ---AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ-----FKSGQPVATFKYHKAPITSIEWHPHEDS---- 361 (440)
T ss_pred ---ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhh-----ccCCCcceeEEeccCCeeEEEeccccCc----
Confidence 11233889999999999955 899999999999999997 3445789999999999999999998764
Q ss_pred CCCCCceEEEEEcccCCcEEEEEe
Q 041325 426 SDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 426 ~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+++|.|.+|.||||
T Consensus 362 --------~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 362 --------VIAASGEDNQITIWDL 377 (440)
T ss_pred --------eEEeccCCCcEEEEEe
Confidence 8999999999999998
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=202.20 Aligned_cols=303 Identities=17% Similarity=0.207 Sum_probs=218.7
Q ss_pred ccCCCccCCCCCccccccccc--cCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNA--SLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL 88 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l 88 (450)
+|.++.-+|+....+...+.. .... .+...+-........ .-...+-++. .|.+.|+|+.| ||++|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~i----W~~~~vl~~~~~~~~----~l~k~l~~m~--~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVI----WSQDPVLDEKEEKNE----NLPKHLCTMD--DHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred eEEEEEecCCceeEecCCcccccccee----eccccccchhhhhhc----ccchhheeec--cccCceeEEEECCCCCeE
Confidence 566777788888777766333 2221 000000000000001 0235666777 99999999999 99999
Q ss_pred EEeeCCCcEEEecCCCCCceeee------ecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCcee
Q 041325 89 YGGSSNGEIRAWNRDPNNYVNIT------STDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 89 ~tgs~dg~v~vw~~~~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~ 160 (450)
|+|++|+.|.||..........+ ...+.-.....+.+|...|..++|+|+. |++++.|++|.+||..+.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--- 161 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--- 161 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---
Confidence 99999999999998741111111 1112223456788999999999999877 999999999999999877
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
+ ....+.+|.+.|..+.|.|-|++|++-+.|++|++|++.
T Consensus 162 -------------~---------------------------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 162 -------------E---------------------------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred -------------e---------------------------eeeeeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence 2 233455899999999999999999999999999999988
Q ss_pred CCeEEEEeecc-----cccceEEEEEeecCCcEEEEEcC----CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 241 DFRCLESVKNA-----HDDAINAIVVSKSNDGFVYTGSA----DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 241 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
+....+.+... .......+.|+|++. +|++... -..+.|.+- ..++.-..+.+|..++.++.
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~nA~n~~~~~~~IieR--------~tWk~~~~LvGH~~p~evvr 272 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPNAVNGGKSTIAIIER--------GTWKVDKDLVGHSAPVEVVR 272 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcC-eecchhhccCCcceeEEEec--------CCceeeeeeecCCCceEEEE
Confidence 87776666522 234578899999666 6665432 235666664 34446677889999999999
Q ss_pred EcCC-----CC------------EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE
Q 041325 312 LSTD-----GT------------VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL 372 (450)
Q Consensus 312 ~~~~-----~~------------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 372 (450)
|+|. .+ .+|+|+.|++|.||.....++++ ....-....|..++|+++ .|
T Consensus 273 FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~------------vi~~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 273 FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF------------VIHNLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh------------hhhhhhcCceeeeeEcCCCCeE
Confidence 9981 11 68899999999999998766552 122233578999999955 89
Q ss_pred EEEeCCCeEEEeeCCCC
Q 041325 373 FSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~ 389 (450)
+++|.||+|.+..++..
T Consensus 341 facS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCeEEEEEcchH
Confidence 99999999999998764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-23 Score=181.17 Aligned_cols=250 Identities=20% Similarity=0.329 Sum_probs=202.4
Q ss_pred eeeEEeecCCC-cceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E
Q 041325 65 CSATLKVKGNS-SYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L 140 (450)
Q Consensus 65 ~~~~l~~~~h~-~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l 140 (450)
+...+. |+. ..|-+++| ++..|++.+.+|.|.-||+.+.+.... .....+.|++++.+|.. +
T Consensus 60 ~~~vi~--g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~------------~d~~gg~IWsiai~p~~~~l 125 (691)
T KOG2048|consen 60 LEPVIH--GPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYN------------IDSNGGAIWSIAINPENTIL 125 (691)
T ss_pred eeEEEe--cCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEE------------ecCCCcceeEEEeCCccceE
Confidence 344444 665 58999999 799999999999999999999886665 55667899999999766 8
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
+.|+.||.+...+...+...+. ..+....++|.+++|++
T Consensus 126 ~IgcddGvl~~~s~~p~~I~~~-----------------------------------------r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 126 AIGCDDGVLYDFSIGPDKITYK-----------------------------------------RSLMRQKSRVLSLSWNP 164 (691)
T ss_pred EeecCCceEEEEecCCceEEEE-----------------------------------------eecccccceEEEEEecC
Confidence 8999999777777776633111 11223467899999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEee-------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVK-------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
++..+++|+.||.|++||...+..+.... .....-|+++.+. .++.+++|..-|.|.+||...+.
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gT------ 236 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGT------ 236 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcc------
Confidence 99999999999999999999988776322 1234568888888 56799999999999999997766
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEE
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLF 373 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 373 (450)
+++....|.+.|.+++..++++++++++.|+.|.-|...+++. .+........|...|.+++..++.++
T Consensus 237 --LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~---------~wv~~~~r~~h~hdvrs~av~~~~l~ 305 (691)
T KOG2048|consen 237 --LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS---------EWVINSRRDLHAHDVRSMAVIENALI 305 (691)
T ss_pred --hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc---------ceeeeccccCCcccceeeeeecceEE
Confidence 8999999999999999999999999999999999998876542 13344566778899999999999999
Q ss_pred EEeCCCeEEEeeCCC
Q 041325 374 SGSSDNTIRIWRRSS 388 (450)
Q Consensus 374 s~~~dg~v~iwd~~~ 388 (450)
+|+.|..+.+-....
T Consensus 306 sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 306 SGGRDFTLAICSSRE 320 (691)
T ss_pred ecceeeEEEEccccc
Confidence 999999887765443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=169.89 Aligned_cols=318 Identities=13% Similarity=0.194 Sum_probs=225.6
Q ss_pred CccceeeeEEeecCCCcceEEEEEe-------CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 60 ASEHQCSATLKVKGNSSYIPSLAIA-------GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 60 ~~~~~~~~~l~~~~h~~~v~~~~~d-------~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
.+.+++...++. +|..+|..++|+ ...+||.+. ..+.+++.....-....+... -..|......
T Consensus 24 k~~yk~t~~l~e-d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~-------D~d~~Esfyt 94 (385)
T KOG1034|consen 24 KRSYKYTNHLKE-DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYA-------DEDHDESFYT 94 (385)
T ss_pred ccceEeeeehhc-cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeecc-------CCCCCcceEE
Confidence 455566666653 889999999993 456677665 578888876554333222211 1146677788
Q ss_pred EEEe---CC---eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 133 LVVL---GD---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 133 l~~~---~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
++|. .+ .+++||.-|.|++.|+.+++ ....+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~-------------------------------------------~~~~~ 131 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-------------------------------------------CSKNY 131 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhh-------------------------------------------hccce
Confidence 8886 21 18889999999999999873 22345
Q ss_pred ecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 207 VHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 207 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.+|...|+.+.++| +.+++++++.|..|++||+++..++..+. .+|.+.|.++.|+.+++ ++++++.|..+++|++
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l 210 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRL 210 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEec
Confidence 58999999999999 56899999999999999999999998885 37899999999999666 9999999999999999
Q ss_pred cchhhhcccc--------------------chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEc-CCCceeeeC
Q 041325 284 LRAALQVNKK--------------------HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWER-DQGNYIVDG 342 (450)
Q Consensus 284 ~~~~~~~~~~--------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~-~~~~~~~~~ 342 (450)
...+...... .....+-..|...|.|+.|- |+++++-+.++.|..|.. +-++.+...
T Consensus 211 ~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~v 288 (385)
T KOG1034|consen 211 NVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNV 288 (385)
T ss_pred ChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhcc
Confidence 8544211000 00011223466666677774 789999999999999987 333332222
Q ss_pred CCCCCceeeeccccCCccceEEEEEe----CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 343 DDDSGHMVLKGALRGHTKAILCLAVV----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
..+.........+.-....|+-+.|. .+.|+.|...|.|.+||++..... ......-......|...+|+.|
T Consensus 289 kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~----~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 289 KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP----KCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred CCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc----cCceEEeccccceeeeeeeccc
Confidence 23333334445555556667666665 459999999999999999974221 1111111223467999999999
Q ss_pred CCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 419 SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+. +|+..++|++|.-||-
T Consensus 365 gs-------------~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 365 GS-------------ILVLVCDDGTVWRWDR 382 (385)
T ss_pred Cc-------------EEEEEeCCCcEEEEEe
Confidence 99 9999999999999984
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=179.70 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=180.9
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~ 161 (450)
++.+++++.||.|++||+.+++.... +..+. .+.+++|++++ + ++++.++.|++||..+++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~------------~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-- 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRT------------FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-- 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEE------------EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--
Confidence 46788999999999999988876554 33343 46789999776 4 5677899999999987632
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 240 (450)
...++ .+. .+..++|+|+++.++++ +.++.|++||+.
T Consensus 66 --------------~~~~~---------------------------~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 66 --------------IGTLP---------------------------SGP-DPELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred --------------EEecc---------------------------CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 11111 121 24568899999877655 568999999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEE
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
+.+.+..+. ....+.+++++|++. +++++..++ .+.+||..+.+ ...... ....+..++|+|++++|
T Consensus 104 ~~~~~~~~~--~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~--------~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 104 TRKVLAEIP--VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYE--------IVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCeEEeEee--CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCe--------EEEEEE-cCCCccEEEECCCCCEE
Confidence 988777765 334568899998554 666666654 56778986554 111111 22345779999999988
Q ss_pred EEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeE-EEEeCCCeEEEeeCCCCccccCC
Q 041325 320 YSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLL-FSGSSDNTIRIWRRSSSVTDHQK 395 (450)
Q Consensus 320 ~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~s~~~dg~v~iwd~~~~~~~~~~ 395 (450)
+++ ..++.|++||+.+++.+........ ...........++|++ +++ ++.+.++.+.+||.+++
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------ 239 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIP------GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------ 239 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeeccc------ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------
Confidence 655 4699999999998865422111000 0000011223566664 453 44456778999999864
Q ss_pred CceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc-ccCCcEEEEEeC
Q 041325 396 GYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG-SLDCEIKIWQIR 450 (450)
Q Consensus 396 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~-~~Dg~i~iw~l~ 450 (450)
+....+. +...+.+++|+|+++ +|+++ +.+|.|++||++
T Consensus 240 --~~~~~~~-~~~~~~~~~~~~~g~-------------~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 240 --EVLDYLL-VGQRVWQLAFTPDEK-------------YLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred --cEEEEEE-eCCCcceEEECCCCC-------------EEEEEcCCCCeEEEEECC
Confidence 3333332 345789999999999 77765 579999999974
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=177.40 Aligned_cols=285 Identities=12% Similarity=0.193 Sum_probs=214.8
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeE
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKI 149 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i 149 (450)
.+.|++|.| ....|++|+.||.++||.++......+ ..+.--..+|.+.+|.+++ +++++....+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l----------qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL----------QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhh----------eeeeeccCccceeeecCCCceEEEecccceEE
Confidence 468999999 688999999999999999876543322 1122334689999999876 8999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC-CCceEEEEEccCCCEEEEE
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH-VDTVSALALSSDGSLLYST 228 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 228 (450)
+.||+++.+........ ++ ...+.....++++++|+..
T Consensus 283 ysyDle~ak~~k~~~~~-----------------------------------------g~e~~~~e~FeVShd~~fia~~ 321 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPY-----------------------------------------GVEEKSMERFEVSHDSNFIAIA 321 (514)
T ss_pred EEeeccccccccccCCC-----------------------------------------CcccchhheeEecCCCCeEEEc
Confidence 99999887542221111 12 2356778889999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc--
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA-- 306 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-- 306 (450)
+..|.|.+....+++.+..++ -.+.|..++|+.++ ..|++++.+|.|.+||++... ++..+.. .+.
T Consensus 322 G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~--------~~~rf~D-~G~v~ 389 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNS--------CLHRFVD-DGSVH 389 (514)
T ss_pred ccCceEEeehhhhhhhhheee--eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcc--------eEEEEee-cCccc
Confidence 999999999999999999987 77899999999644 578888888999999998765 4444432 222
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEe--CCCeEE
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGS--SDNTIR 382 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~--~dg~v~ 382 (450)
-++++.++++.+||+|+..|.|-|||..+... .....+...+..-...|+++.|+++ .||.+| .+..+|
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~-------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalr 462 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFA-------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALR 462 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEeccchhhc-------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceE
Confidence 35677889999999999999999999765321 1122344555556678999999966 555554 567788
Q ss_pred EeeCCCCccccCCCceeEEEec---CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 383 IWRRSSSVTDHQKGYSCLAVLE---GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+-.+.+- .....+. ..-+.|+|++|+|.+. +||.|..+|.|.+|+|.
T Consensus 463 LVHvPS~--------TVFsNfP~~n~~vg~vtc~aFSP~sG-------------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 463 LVHVPSC--------TVFSNFPTSNTKVGHVTCMAFSPNSG-------------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeccce--------eeeccCCCCCCcccceEEEEecCCCc-------------eEEeecCCCceeeEeec
Confidence 8887752 2222222 2335689999999999 99999999999999974
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=167.00 Aligned_cols=230 Identities=22% Similarity=0.287 Sum_probs=175.1
Q ss_pred EecCCCceEEEEEeCC---eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGD---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
...|.+.|+++...+. ++++|+.||.|.+||++....... .+- .....|+...
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~l--i~k~~c~v~~-------------------- 94 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGL--IAKHKCIVAK-------------------- 94 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccc--eeheeeeccc--------------------
Confidence 4578999999999743 399999999999999987632100 000 0000111011
Q ss_pred ecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC--cEEEEEcCCC
Q 041325 200 RHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND--GFVYTGSADT 276 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg 276 (450)
..-.+|.-.|.++.|-| |.-++.+++.|.++++||.++.+....++ .++.|.+-+++|-.. .++++|..+-
T Consensus 95 ----~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~ 168 (397)
T KOG4283|consen 95 ----QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDV 168 (397)
T ss_pred ----cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCC
Confidence 11125888999999999 77789999999999999999999888886 677888888887443 3688999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCC-ceeeeCCCCC-Cceeeec
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGACDRSILVWERDQG-NYIVDGDDDS-GHMVLKG 353 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~~~ 353 (450)
.|++-|+..+. ....+.+|...|.++.|+|... .|++|+.||.|++||++.. -++..++... .......
T Consensus 169 ~VrLCDi~SGs--------~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 169 QVRLCDIASGS--------FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK 240 (397)
T ss_pred cEEEEeccCCc--------ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence 99999998877 7889999999999999999766 5788999999999999865 3333333333 2222333
Q ss_pred cccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCc
Q 041325 354 ALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
.-..|.+.|..++|. +.++++++.|..+++|+..+|.
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 467899999999997 5699999999999999998874
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-24 Score=185.17 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=100.4
Q ss_pred ceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeE
Q 041325 306 AVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTI 381 (450)
Q Consensus 306 ~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v 381 (450)
.|+.+.|.| |.+.|++++.||.|++|.+..+-.. .....+...+..|...|+++.|++ +.|++++.|.+|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti 702 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTI 702 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCC------cccCCcceeeecccceEEEEEecchhhhHhhhhhcccee
Confidence 367788888 6788999999999999999865322 233445577889999999999994 699999999999
Q ss_pred EEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++||+.+. +....+.+|++.|.+++|+|+|+ .++|.+.||+|++|+-
T Consensus 703 ~lWDl~~~--------~~~~~l~gHtdqIf~~AWSpdGr-------------~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 703 ELWDLANA--------KLYSRLVGHTDQIFGIAWSPDGR-------------RIATVCKDGTLRVYEP 749 (1012)
T ss_pred eeeehhhh--------hhhheeccCcCceeEEEECCCCc-------------ceeeeecCceEEEeCC
Confidence 99999975 66778899999999999999999 9999999999999974
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=172.71 Aligned_cols=314 Identities=16% Similarity=0.221 Sum_probs=221.7
Q ss_pred eeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe-E
Q 041325 65 CSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK-L 140 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l 140 (450)
+.+-+. +|.+.|.++.| ++++|++|+.|..+++|+++..-..+. +....+.-..|...|.|++|. ++. +
T Consensus 48 ~qKD~~--~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-----~KPI~~~~~~H~SNIF~L~F~~~N~~~ 120 (609)
T KOG4227|consen 48 CQKDVR--EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-----PKPIGVMEHPHRSNIFSLEFDLENRFL 120 (609)
T ss_pred hhhhhh--hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-----CCCceeccCccccceEEEEEccCCeeE
Confidence 444555 99999999999 799999999999999999864332221 011111223567899999998 333 9
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
++|+.+++|..-|+++.+..+ ..... ...+.|..+..+|
T Consensus 121 ~SG~~~~~VI~HDiEt~qsi~----------------V~~~~-------------------------~~~~~VY~m~~~P 159 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIETKQSIY----------------VANEN-------------------------NNRGDVYHMDQHP 159 (609)
T ss_pred ecCCCcceeEeeecccceeee----------------eeccc-------------------------CcccceeecccCC
Confidence 999999999999999984322 22110 1334899999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCe-EEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFR-CLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
..+.|++.+.++.|.+||.+... .+..+. .........+.|+|....+|++.+..+.+.+||.+......... ....
T Consensus 160 ~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~-~~~~ 238 (609)
T KOG4227|consen 160 TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR-SMFK 238 (609)
T ss_pred CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh-hccc
Confidence 88899999999999999998755 222222 12445678899999888899999999999999998755211000 0001
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee-eCCCCC-CceeeeccccCCccceEEEEEeCC-eEEEE
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV-DGDDDS-GHMVLKGALRGHTKAILCLAVVSN-LLFSG 375 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~ 375 (450)
.+......-.++.|+|+|+.|++--....-.+||+.+.++.. ..+.+. +. .....+.++.|.++ .+++|
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY--------~N~~T~KS~~F~~D~~v~tG 310 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY--------CNIKTIKSMTFIDDYTVATG 310 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc--------eeeeeeeeeeeecceeeecc
Confidence 111112233678899999999887777777788988755432 111111 11 11245677888876 78999
Q ss_pred eCCCeEEEeeCCCCccccC---------------CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 376 SSDNTIRIWRRSSSVTDHQ---------------KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
+.+-.|++|.+........ -.-+.+..+++|.+-++.+.|+|... +|++.+-
T Consensus 311 SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-------------~l~SSGV 377 (609)
T KOG4227|consen 311 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-------------LLVSSGV 377 (609)
T ss_pred CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc-------------eEeccch
Confidence 9999999998864311100 11245678899999999999999998 9999999
Q ss_pred CCcEEEEE
Q 041325 441 DCEIKIWQ 448 (450)
Q Consensus 441 Dg~i~iw~ 448 (450)
...++||.
T Consensus 378 E~~~KlWS 385 (609)
T KOG4227|consen 378 ENSFKLWS 385 (609)
T ss_pred hhheeccc
Confidence 99999995
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-24 Score=186.43 Aligned_cols=302 Identities=20% Similarity=0.305 Sum_probs=199.6
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg 147 (450)
.|...|..+.| -...|++++.|.++++||++...+.... .+.||.+.|.+++|.+.. |++|+.||
T Consensus 98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~----------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR----------LNLGHTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce----------eecccccccchhhhccCCCcceeeccCCC
Confidence 89999999999 5678999999999999999988765431 367999999999999665 99999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE---EEEccCCCE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA---LALSSDGSL 224 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~ 224 (450)
.|.|||++-......... ....+......+ ...............+...|.+ +.+..|...
T Consensus 168 ~illWD~R~n~~d~~e~~---~~~~~~~~n~~p-------------tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEF---DNRIYGRHNTAP-------------TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred cEEEEEEeccchhhHHHH---hhhhhccccCCC-------------CCCchhhccccccccccCceeeeeEEEEEeccce
Confidence 999999986531100000 000000000000 0001111222233445555555 556677888
Q ss_pred EEEEeC-CCcEEEEecCCCeEEEEeec-------cc---ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 225 LYSTSW-DRTFKIWRTSDFRCLESVKN-------AH---DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 225 l~~~~~-dg~i~iwd~~~~~~~~~~~~-------~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
|++++. |+.|++||++.......... .+ ...+.++.....+. ++++.+.|+.|++||+..-.
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s------ 304 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLS------ 304 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccC------
Confidence 888887 99999999987654433221 11 23456666655444 55555569999999997644
Q ss_pred chhhhhHhhcccc--eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 294 HSLVQTLEKHKSA--VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 294 ~~~~~~~~~~~~~--i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
..++..+.++... -..-..+|++.++++|+.|...++|.+.+.+. ....+.+|...|+++.|.+.
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~------------~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA------------PPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC------------ChhhhhCcceEEEEEeecccc
Confidence 2234444433221 12234688999999999999999999986542 33577899999999999854
Q ss_pred --eEEEEeCCCeEEEeeCCCCcccc------CCCceeEEEecCCCcceEEEEEEecC
Q 041325 371 --LLFSGSSDNTIRIWRRSSSVTDH------QKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
-+++++.|.++++|++..+.... .........+++|.-.+..+.++-.+
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~ 429 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRK 429 (720)
T ss_pred CCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccc
Confidence 78888999999999997654322 11122334456666666555555433
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.2e-25 Score=194.52 Aligned_cols=228 Identities=21% Similarity=0.408 Sum_probs=195.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
.|...|.|+.. .++.+++|+.|..+-+|....-..+.. +.+|..+|.+|.|+... |++|+.+|+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S------------~~~hespIeSl~f~~~E~Llaagsasgt 93 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS------------LTGHESPIESLTFDTSERLLAAGSASGT 93 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe------------eeccCCcceeeecCcchhhhcccccCCc
Confidence 78999999987 789999999999999998766554333 78999999999999666 889999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||++.. +....+.+|...+..+.|+|-+.+++.|
T Consensus 94 iK~wDleeA-------------------------------------------k~vrtLtgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 94 IKVWDLEEA-------------------------------------------KIVRTLTGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred eeeeehhhh-------------------------------------------hhhhhhhccccCcceeeeccceEEeccc
Confidence 999999977 2333555899999999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
+.|..+++||.+...|...+. +|...+..+.|.|+ +.+++.++.|..+++||...++ ....|..|...+.
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk--------~~~ef~~~e~~v~ 200 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGK--------LSKEFKSHEGKVQ 200 (825)
T ss_pred cccccceehhhhccCceeeec-CCcceeEEEeecCC-CceeeccCCcceeeeecccccc--------ccccccccccccc
Confidence 999999999999888999998 69999999999994 4499999999999999998877 8889999999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
.+.|+|..-+++.|+.|+++++||+++-+.+ .........|.+..|+++ .+++|..+
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I-------------~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVI-------------SSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEe-------------eccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999999999999999999976644 334444677889999865 44444443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=160.64 Aligned_cols=289 Identities=17% Similarity=0.251 Sum_probs=199.2
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
++-.+|. |.. -.|+.| .|.+||.|+.||.|.|||+.+...... +.+|..+|.+++|++++
T Consensus 16 el~~tld---~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~------------lsaH~~pi~sl~WS~dgr~ 79 (405)
T KOG1273|consen 16 ELTHTLD---NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARM------------LSAHVRPITSLCWSRDGRK 79 (405)
T ss_pred hhceecc---CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhh------------hhccccceeEEEecCCCCE
Confidence 4555665 333 788888 599999999999999999998875555 78999999999999887
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++++.|..|.+||+..+.. +..+ ....+|..+.|+
T Consensus 80 LltsS~D~si~lwDl~~gs~----------------l~ri----------------------------rf~spv~~~q~h 115 (405)
T KOG1273|consen 80 LLTSSRDWSIKLWDLLKGSP----------------LKRI----------------------------RFDSPVWGAQWH 115 (405)
T ss_pred eeeecCCceeEEEeccCCCc----------------eeEE----------------------------EccCccceeeec
Confidence 99999999999999998843 2222 144589999999
Q ss_pred cC-CCEEEEEeCCCcEEEEecCCCeEEEEee-ccccc----ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 220 SD-GSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDD----AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 220 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
|. .+.+++.-.+..-.+-++..++ +.+. ....+ ...+..|.+ .++++++|...|.+.++|..+.+
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e------ 186 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLE------ 186 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchhe------
Confidence 93 3344444334444455554422 2211 01111 112224555 45599999999999999997765
Q ss_pred chhhhhHhhcc-cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC--CccceEEEEEe--
Q 041325 294 HSLVQTLEKHK-SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG--HTKAILCLAVV-- 368 (450)
Q Consensus 294 ~~~~~~~~~~~-~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-- 368 (450)
++..++... ..|..+.++..|+.|+.-+.|..|+.|++..--.. .......+.+.+.. ....=.++.|+
T Consensus 187 --~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~----~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 187 --CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE----GRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred --eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc----CccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 555555444 67889999999999999999999999998731100 00011111111110 01111455565
Q ss_pred CCeEEEEeC-CCeEEEeeCCCCccccCCCceeEEEecCCC-cceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 369 SNLLFSGSS-DNTIRIWRRSSSVTDHQKGYSCLAVLEGHR-RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 369 ~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
|.|+++++. -..++||....| .+++.+.|.. .....+.|+|-.. .+++- ..|.|++
T Consensus 261 geYv~a~s~~aHaLYIWE~~~G--------sLVKILhG~kgE~l~DV~whp~rp-------------~i~si-~sg~v~i 318 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSIG--------SLVKILHGTKGEELLDVNWHPVRP-------------IIASI-ASGVVYI 318 (405)
T ss_pred ccEEEeccccceeEEEEecCCc--------ceeeeecCCchhheeeccccccee-------------eeeec-cCCceEE
Confidence 447766663 456999998875 7888888877 5678899999988 77777 7889999
Q ss_pred EEe
Q 041325 447 WQI 449 (450)
Q Consensus 447 w~l 449 (450)
|..
T Consensus 319 w~~ 321 (405)
T KOG1273|consen 319 WAV 321 (405)
T ss_pred EEe
Confidence 975
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=163.62 Aligned_cols=296 Identities=17% Similarity=0.244 Sum_probs=199.4
Q ss_pred eeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEEeCCe-E
Q 041325 64 QCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVVLGDK-L 140 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~-l 140 (450)
.+...|+ +|.+.|+++.| ...+|.+|..-|.|++|++.+...... +. .|...|+.+...++. +
T Consensus 5 dP~fvLR--p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~------------~r~~g~~~it~lq~~p~d~l 70 (323)
T KOG0322|consen 5 DPFFVLR--PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPL------------IRLFGRLFITNLQSIPNDSL 70 (323)
T ss_pred CCeeEec--cccchheehhhccchhhhcccccceEEEEEeecCccchh------------hhhhccceeeceeecCCcch
Confidence 4556677 99999999999 467799999999999999998775544 33 567789999988744 9
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
.+-+.|+.+.+|++....... + |+-.++++-|.+
T Consensus 71 ~tqgRd~~L~lw~ia~s~~i~--------------i--------------------------------~Si~~nslgFCr 104 (323)
T KOG0322|consen 71 DTQGRDPLLILWTIAYSAFIS--------------I--------------------------------HSIVVNSLGFCR 104 (323)
T ss_pred hhcCCCceEEEEEccCcceEE--------------E--------------------------------eeeecccccccc
Confidence 999999999999998753211 1 111122222211
Q ss_pred -----CC----CEEEEEeCC-CcEEEEecCCCeEEEEee---cccccceEEEEEeecCCc--EEEEEcCCCcEEEEeCcc
Q 041325 221 -----DG----SLLYSTSWD-RTFKIWRTSDFRCLESVK---NAHDDAINAIVVSKSNDG--FVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 221 -----~~----~~l~~~~~d-g~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~ 285 (450)
++ ..++.-+.. ..+++-|......+.... ....+.+++..+...... ++++|..+|.+.+||+.+
T Consensus 105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 00 011111100 012223332222222221 133456777664432222 588899999999999987
Q ss_pred hhh--hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 286 AAL--QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 286 ~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+.. +....++.......|..++.++.|.+.-..=++|+.+..+..|.+.... ..+.......-.+..|.
T Consensus 185 ~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~---------gslq~~~e~~lknpGv~ 255 (323)
T KOG0322|consen 185 GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST---------GSLQIRKEITLKNPGVS 255 (323)
T ss_pred CceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc---------CcccccceEEecCCCcc
Confidence 521 1122334555566799999999998866667788888899999987431 11111122222223343
Q ss_pred --EEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 364 --CLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 364 --~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
.|..+++.+||+++|++||||..++. .++..++.|...|++++|+|+.. ++|++|.|
T Consensus 256 gvrIRpD~KIlATAGWD~RiRVyswrtl--------~pLAVLkyHsagvn~vAfspd~~-------------lmAaaskD 314 (323)
T KOG0322|consen 256 GVRIRPDGKILATAGWDHRIRVYSWRTL--------NPLAVLKYHSAGVNAVAFSPDCE-------------LMAAASKD 314 (323)
T ss_pred ceEEccCCcEEeecccCCcEEEEEeccC--------CchhhhhhhhcceeEEEeCCCCc-------------hhhhccCC
Confidence 44455679999999999999999984 78999999999999999999988 99999999
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
+.|.+|+|
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999997
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=179.54 Aligned_cols=235 Identities=21% Similarity=0.360 Sum_probs=188.8
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
.-...|+++.. ||+.|++|+.-.++.|||+.........+ +....-.+.+++.++|. .+++..||.
T Consensus 463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae----------ltssapaCyALa~spDakvcFsccsdGn 532 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE----------LTSSAPACYALAISPDAKVCFSCCSDGN 532 (705)
T ss_pred CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh----------cCCcchhhhhhhcCCccceeeeeccCCc
Confidence 34556666666 89999999999999999998655322111 22333467888889887 888999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|.|||+.+.. .+..+.+|.+.+.||.++++|..|.+|
T Consensus 533 I~vwDLhnq~-------------------------------------------~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 533 IAVWDLHNQT-------------------------------------------LVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred EEEEEcccce-------------------------------------------eeecccCCCCCceeEEecCCCceeecC
Confidence 9999999872 334556899999999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
+-|++||.||+++++.+.... ....|.++..+|.++ ++++|-.++.+.+......+ ...+..|++.|.
T Consensus 570 GlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~d-WlavGMens~vevlh~skp~---------kyqlhlheScVL 637 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKPE---------KYQLHLHESCVL 637 (705)
T ss_pred CCccceeehhhhhhhhhhhhh--hhhhheecccCCCcc-ceeeecccCcEEEEecCCcc---------ceeecccccEEE
Confidence 999999999999998877664 678999999999555 99999999999998865443 445667899999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 386 (450)
++.|.+.|+++++.+.|..+-.|...-|..++ .. .....|+++..+ ..+|+||+.|....+|.+
T Consensus 638 SlKFa~cGkwfvStGkDnlLnawrtPyGasiF-------------qs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 638 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-------------QS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEecccCceeeecCchhhhhhccCcccccee-------------ec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999999999998776553 11 224566666655 569999999998888865
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-22 Score=180.56 Aligned_cols=247 Identities=18% Similarity=0.204 Sum_probs=192.2
Q ss_pred ecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+|....+.|+|.+++ |++++.||.|++|+......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 4788899999999777 99999999999999776510
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
....+.-+...|.+++.. +.+|++|+.+++|.+|.+.+++.-..+. ...-++.+++++.+ +.+++.|+.|-.|++.
T Consensus 48 ~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~ 123 (933)
T KOG1274|consen 48 EPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILA-RFTLPIRDLAVSGS-GKMIAAGSDDTAVKLL 123 (933)
T ss_pred CCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceee-eeeccceEEEEecC-CcEEEeecCceeEEEE
Confidence 000000145567666654 5589999999999999999887655554 56678999999963 4489999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
++.+.. ....+.+|.++|.++.|+|++++||+.+.||.|++||+.++.....+..-..... ......
T Consensus 124 ~~~D~s--------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-----~~~s~i 190 (933)
T KOG1274|consen 124 NLDDSS--------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-----FILSRI 190 (933)
T ss_pred eccccc--------hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-----ccccce
Confidence 987665 7788899999999999999999999999999999999998876543322111100 011455
Q ss_pred eEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe--cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 362 ILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL--EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 362 v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
+..++|+++ .++..+.|+.|++|+.... .....+ ..+...+..++|+|+|+ |||+
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w--------e~~f~Lr~~~~ss~~~~~~wsPnG~-------------YiAA 249 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGW--------ELQFKLRDKLSSSKFSDLQWSPNGK-------------YIAA 249 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCCc--------eeheeecccccccceEEEEEcCCCc-------------EEee
Confidence 678899966 8888889999999998863 444444 33445599999999999 9999
Q ss_pred cccCCcEEEEEeC
Q 041325 438 GSLDCEIKIWQIR 450 (450)
Q Consensus 438 ~~~Dg~i~iw~l~ 450 (450)
++.||.|.|||++
T Consensus 250 s~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 250 STLDGQILVWNVD 262 (933)
T ss_pred eccCCcEEEEecc
Confidence 9999999999974
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-22 Score=161.01 Aligned_cols=280 Identities=19% Similarity=0.234 Sum_probs=201.6
Q ss_pred EEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCC-CCcceeEEecCCCceEEEEEe-------CCe--EEEEeCC
Q 041325 79 PSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDV-GDHANVVATGNGDAVKSLVVL-------GDK--LFSAHQD 146 (450)
Q Consensus 79 ~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~-------~~~--l~s~~~d 146 (450)
..+.| ||.-|++-+.|..+++|++.......-..... .......-......|...+|. |+. +++.+.|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 34556 89999999999999999986543222111111 111112223445678888886 333 7888889
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC---ceEEEEEccCCC
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD---TVSALALSSDGS 223 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~ 223 (450)
.-|++||.-+++.... .. ...|.+ ...+++|+|||.
T Consensus 133 ~PIh~wdaftG~lraS----------------y~-------------------------~ydh~de~taAhsL~Fs~DGe 171 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRAS----------------YR-------------------------AYDHQDEYTAAHSLQFSPDGE 171 (406)
T ss_pred Cceeeeeccccccccc----------------hh-------------------------hhhhHHhhhhheeEEecCCCC
Confidence 9999999998843110 00 012332 456899999999
Q ss_pred EEEEEeCCCcEEEEec-CCCeEEEEe------ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 224 LLYSTSWDRTFKIWRT-SDFRCLESV------KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~-~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
+|++|. ...|+++|+ +.|+..... +.+..+-+.+++++|...+.++.|+....+-||.-.... +
T Consensus 172 qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--------p 242 (406)
T KOG2919|consen 172 QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--------P 242 (406)
T ss_pred eEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--------c
Confidence 999876 689999999 444322211 113467789999999888899999999999999865544 7
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc-ceEEEEEe----CC
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK-AILCLAVV----SN 370 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~----~~ 370 (450)
+..+.+|.+.|+.++|.++|+.|++|.. |-.|..||++..+.. ...+..|.. .-..|-|+ ++
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p------------v~~L~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP------------VYALERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch------------hhhhhhhccCccceEEEecCCCCc
Confidence 7888899999999999999999999986 678999999965422 244555544 22334444 67
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
+|++|+.||.|++||++.. ...+..+..|...|+.++++|--. +++|++.
T Consensus 311 ~LasG~tdG~V~vwdlk~~-------gn~~sv~~~~sd~vNgvslnP~mp-------------ilatssG 360 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDL-------GNEVSVTGNYSDTVNGVSLNPIMP-------------ILATSSG 360 (406)
T ss_pred eeeccCCCccEEEEecCCC-------CCcccccccccccccceecCcccc-------------eeeeccC
Confidence 9999999999999999863 245667788999999999999977 7777764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=170.61 Aligned_cols=260 Identities=14% Similarity=0.152 Sum_probs=198.8
Q ss_pred eEEEEEe-CCEEEEe--eCCCcEEEecCCCCC--ceeeeecCCCCcceeEEecCCC-ceEEEEEeCCeEEEEeCCCeEEE
Q 041325 78 IPSLAIA-GKLLYGG--SSNGEIRAWNRDPNN--YVNITSTDVGDHANVVATGNGD-AVKSLVVLGDKLFSAHQDHKIRV 151 (450)
Q Consensus 78 v~~~~~d-~~~l~tg--s~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~l~s~~~dg~i~i 151 (450)
+.++.|+ .++|+++ +.|..|++|.-.... .... . ...+... .|.+..++ -++++|+..+.|+|
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~-~---------k~~gd~~~Cv~~~s~S-~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV-R---------KLTGDNAFCVACASQS-LYEISGGQSGCVKI 105 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCcccee-e---------ccccchHHHHhhhhcc-eeeeccCcCceeee
Confidence 8888883 4445554 467789999754431 1111 0 0112211 22333333 44999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
||++.. .+ ...+.+|.+.|+++.++-...+|++++..
T Consensus 106 wdl~~k----------------l~---------------------------hr~lkdh~stvt~v~YN~~DeyiAsvs~g 142 (673)
T KOG4378|consen 106 WDLRAK----------------LI---------------------------HRFLKDHQSTVTYVDYNNTDEYIASVSDG 142 (673)
T ss_pred hhhHHH----------------HH---------------------------hhhccCCcceeEEEEecCCcceeEEeccC
Confidence 999865 11 22334799999999999999999999999
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
|.|.|..+.++.....+.......|.-+.+++....+|.+++.+|.|.+||+.... +.....+.|..+...|+
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-------p~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-------PIFHASEAHSAPCRGIC 215 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-------cccchhhhccCCcCcce
Confidence 99999999999988888856667788999999888789999999999999986543 24455677999999999
Q ss_pred EcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 312 LST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 312 ~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
|+| +..+|++.+.|..|.+||....+.. .......+..+++|.+ -+|++|...|.|..||++.
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~--------------~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQAST--------------DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ecCCccceEEEecccceEEEeeccccccc--------------ceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 999 5568889999999999999865422 1223456778888874 4999999999999999997
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecC
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
. ..++..+..|...|++++|-+..
T Consensus 282 ~-------k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 282 T-------KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred C-------CCCceEeeecccceeEEEeeecc
Confidence 4 46788899999999999999874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=153.26 Aligned_cols=290 Identities=17% Similarity=0.238 Sum_probs=206.6
Q ss_pred CEEEEee----CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCC-------CeEEE
Q 041325 86 KLLYGGS----SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQD-------HKIRV 151 (450)
Q Consensus 86 ~~l~tgs----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~d-------g~i~i 151 (450)
-.+++|. .|+.|.+-+++.+.-... .-.+..|.+.|+.|+-+|.. |+++..+ -.+.|
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~---------skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aai 97 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELL---------SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAI 97 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhh---------hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEE
Confidence 3455554 367777777665432111 11356788999999988655 5555432 23678
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
|.+...... .....++++..++. .+-+.|.|+.|.|++..+++-. |
T Consensus 98 w~ipe~~~~-------S~~~tlE~v~~Ldt--------------------------eavg~i~cvew~Pns~klasm~-d 143 (370)
T KOG1007|consen 98 WQIPEPLGQ-------SNSSTLECVASLDT--------------------------EAVGKINCVEWEPNSDKLASMD-D 143 (370)
T ss_pred EecccccCc-------cccchhhHhhcCCH--------------------------HHhCceeeEEEcCCCCeeEEec-c
Confidence 988765221 11111223333321 3556899999999999988776 8
Q ss_pred CcEEEEecCCCeE-EEEee----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 232 RTFKIWRTSDFRC-LESVK----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 232 g~i~iwd~~~~~~-~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
..|.+|++.++.. +..+. ..+....++-+|+|..++..+....|+++..||+++.+. ....-..|...
T Consensus 144 n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~-------~~sI~dAHgq~ 216 (370)
T KOG1007|consen 144 NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKK-------NNSIEDAHGQR 216 (370)
T ss_pred CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhh-------hcchhhhhcce
Confidence 8999999998765 33332 234566788899997777777777899999999987651 23334568888
Q ss_pred eEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEE
Q 041325 307 VTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIR 382 (450)
Q Consensus 307 i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~ 382 (450)
+..+.|+|+.+ +|++|+.||.|++||.+..+. +...+.+|...|.++.|++ ++|++|+.|..|.
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCc------------cccccCCCceEEEEEEecCccceEEEecCCCceeE
Confidence 99999999765 678899999999999997553 4578899999999999985 4999999999999
Q ss_pred EeeCCCCcccc----------------C-----CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 383 IWRRSSSVTDH----------------Q-----KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 383 iwd~~~~~~~~----------------~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+|...+-.... . -.-..+.++..|...|.+++|+.-... ++|+-|.|
T Consensus 285 Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW------------iFASLSYD 352 (370)
T KOG1007|consen 285 LSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW------------IFASLSYD 352 (370)
T ss_pred EEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe------------eEEEeccC
Confidence 99765432110 0 112345578889999999999998885 88999999
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
|.+.|=.+
T Consensus 353 GRviIs~V 360 (370)
T KOG1007|consen 353 GRVIISSV 360 (370)
T ss_pred ceEEeecC
Confidence 99887443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-20 Score=167.03 Aligned_cols=274 Identities=12% Similarity=0.147 Sum_probs=180.0
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLV 134 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 134 (450)
+...++++++.+. +|.. +.+++| |++.+ ++++.++.|++||..+++.... +..+. .+..++
T Consensus 16 ~d~~t~~~~~~~~--~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------~~~~~-~~~~~~ 79 (300)
T TIGR03866 16 IDTATLEVTRTFP--VGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT------------LPSGP-DPELFA 79 (300)
T ss_pred EECCCCceEEEEE--CCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe------------ccCCC-CccEEE
Confidence 3344566777777 5544 667888 67766 6777899999999988775443 22222 346778
Q ss_pred EeCCe--EE-EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 135 VLGDK--LF-SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 135 ~~~~~--l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
|+++. ++ +++.|+.|++||+.+... +..++ +..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~----------------~~~~~----------------------------~~~ 115 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKV----------------LAEIP----------------------------VGV 115 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeE----------------EeEee----------------------------CCC
Confidence 88765 44 455689999999987622 11111 122
Q ss_pred ceEEEEEccCCCEEEEEeCCC-cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLLYSTSWDR-TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+.+++|+|++++++++..++ .+.+||..+++....+. ....+..+.|++++..+++++..++.|++||+++++...
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~ 193 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK 193 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence 457799999999999988765 56778998887766554 234567889998655444566679999999998765211
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
..... .............++|+|++++++++ ..++.|.+||.++++... .. .+...+.+++|++
T Consensus 194 ~~~~~-~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~-------------~~-~~~~~~~~~~~~~ 258 (300)
T TIGR03866 194 KITFE-IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD-------------YL-LVGQRVWQLAFTP 258 (300)
T ss_pred eeeec-ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-------------EE-EeCCCcceEEECC
Confidence 00000 00000011224568899999986554 456789999998776441 11 1234678888874
Q ss_pred --CeEEEE-eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 370 --NLLFSG-SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 370 --~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
++|+++ ..+|.|++||++++ +++..+... ...+.++++|
T Consensus 259 ~g~~l~~~~~~~~~i~v~d~~~~--------~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 259 DEKYLLTTNGVSNDVSVIDVAAL--------KVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCC--------cEEEEEEcc-cccceeEeCC
Confidence 477765 56899999999974 566666544 4457777754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-21 Score=147.11 Aligned_cols=291 Identities=13% Similarity=0.160 Sum_probs=193.8
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.+++|++|..+|.|-+..+....-.. ....+....+...+|.++|+.++|..+.|++|+. |.|+-|..+......-
T Consensus 21 ~~~~l~agn~~G~iav~sl~sl~s~s--a~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~- 96 (325)
T KOG0649|consen 21 SKQYLFAGNLFGDIAVLSLKSLDSGS--AEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLA- 96 (325)
T ss_pred cceEEEEecCCCeEEEEEehhhhccc--cCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhcc-
Confidence 68999999999999999886533211 1223334445568999999999999887888775 9999999876532100
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
...+.....+ ...-.-..-.|+++-..|..+-++.++.|+.++-||+++|+
T Consensus 97 ---------~K~lwe~~~P--------------------~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~ 147 (325)
T KOG0649|consen 97 ---------TKRLWEVKIP--------------------MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR 147 (325)
T ss_pred ---------chhhhhhcCc--------------------cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE
Confidence 0000000000 00000112268999999976666666689999999999999
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc-cchhhhhHhhc-ccceEEEEEcCCCCEEEE
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK-KHSLVQTLEKH-KSAVTALALSTDGTVLYS 321 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~ 321 (450)
....++ +|.+.+.++.-.. ....+++|+.||++|+||.++.++.... ..+....+..| ...|-+++- +..+|++
T Consensus 148 i~r~~r-GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvC 223 (325)
T KOG0649|consen 148 IQREYR-GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVC 223 (325)
T ss_pred EEEEEc-CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEe
Confidence 999999 9999999998754 4558999999999999999988733211 11111112222 245666666 5668887
Q ss_pred eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEE
Q 041325 322 GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA 401 (450)
Q Consensus 322 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 401 (450)
|+ ...+.+|.+++.++. ....+ ...+..+.|..+.+++++..+.|.-|.+.. ....
T Consensus 224 Gg-Gp~lslwhLrsse~t-----------~vfpi---pa~v~~v~F~~d~vl~~G~g~~v~~~~l~G---------vl~a 279 (325)
T KOG0649|consen 224 GG-GPKLSLWHLRSSEST-----------CVFPI---PARVHLVDFVDDCVLIGGEGNHVQSYTLNG---------VLQA 279 (325)
T ss_pred cC-CCceeEEeccCCCce-----------EEEec---ccceeEeeeecceEEEeccccceeeeeecc---------EEEE
Confidence 76 567999999987654 22222 455777889999999999999999998873 2222
Q ss_pred EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 402 VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 402 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
.........++..|+...-+ ++-.++..+.+.|+
T Consensus 280 ~ip~~s~~c~s~s~~~~p~k------------~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 280 NIPVESTACYSASWQTSPIK------------FISIAGFSNKLHIL 313 (325)
T ss_pred eccCCccceeeecccCCceE------------EEEecccceeeeee
Confidence 23333333444444433321 66667777777665
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=164.64 Aligned_cols=290 Identities=13% Similarity=0.213 Sum_probs=214.8
Q ss_pred CcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCC-E
Q 041325 11 CRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGK-L 87 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~-~ 87 (450)
.++|.+.+|.|..+.+..+.-+..+++ +.... .....++.+. =-..+|.+..| +|. .
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lri---------fqvDG---------k~N~~lqS~~--l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRI---------FQVDG---------KVNPKLQSIH--LEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEE---------EEecC---------ccChhheeee--eccCccceeeecCCCceE
Confidence 347888888888888888877777765 22211 1223555555 34678888888 787 8
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC-CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEec
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG-DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
+++++.....+.||+.+.+....... .++. ..+.....+++. |+..|..|.|.+....++
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~----------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~------- 335 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPP----------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK------- 335 (514)
T ss_pred EEecccceEEEEeeccccccccccCC----------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-------
Confidence 99999999999999998886655221 1222 344555556554 999999999999998887
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 244 (450)
+.+..+. -.+.|..++|+.+++.|++++.+|.|.+||++...+
T Consensus 336 ---------eli~s~K----------------------------ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 336 ---------ELITSFK----------------------------IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred ---------hhhheee----------------------------eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 3333322 345799999999999999999999999999999999
Q ss_pred EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 245 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
++.+.....-.-++++.++++. ++++|+..|.|.|||..+.. .....+++..+......|++|+|++|+++|+.++.
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~--~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCF--ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred EEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhh--ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 9999733333345566556444 99999999999999976533 23455678888888899999999999999998876
Q ss_pred --CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 325 --DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 325 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
+..+++-.+.+......++. ....-+.|+|++|+++ +||.|..+|.|.+|.+.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~----------~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPT----------SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccccceEEEeccceeeeccCCC----------CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 56799988886553311111 1222356899999964 99999999999999875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-23 Score=191.24 Aligned_cols=246 Identities=20% Similarity=0.251 Sum_probs=190.9
Q ss_pred CceEEEEEeCC--e----EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 128 DAVKSLVVLGD--K----LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 128 ~~v~~l~~~~~--~----l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
...+.|+|... . |+.|.+||.|.+||...... . ... .
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----------~---~~~------------------------~ 107 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----------N---ASE------------------------E 107 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc----------C---cch------------------------H
Confidence 46788888632 2 77788899999999876300 0 000 1
Q ss_pred ceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEEe-ecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 202 KKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.......|.+.|..+.|++. +++|++|+.||.|.|||+...+.-... .....+.|.+++|+..-..+|++++.+|.+.
T Consensus 108 ~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 108 VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAV 187 (1049)
T ss_pred HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCce
Confidence 11233469999999999994 559999999999999999886554444 2235678999999976666799999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcc--cceEEEEEcCCC-CEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHK--SAVTALALSTDG-TVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~~~~-~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
|||++..+ .+-.+..+. ..+..++|+|+. ..|++++.|. .|.+||++.-. .+.+
T Consensus 188 iWDlr~~~--------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as------------sP~k 247 (1049)
T KOG0307|consen 188 IWDLRKKK--------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS------------SPLK 247 (1049)
T ss_pred eccccCCC--------cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC------------Cchh
Confidence 99998765 444444443 347889999975 4566665543 59999998532 2446
Q ss_pred cccCCccceEEEEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCC
Q 041325 354 ALRGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
.+.+|...|.+++|++ .+|++++.|+.|.+|+.+++ +.+..+......+..+.|+|....
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg--------Evl~~~p~~~nW~fdv~w~pr~P~--------- 310 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG--------EVLGELPAQGNWCFDVQWCPRNPS--------- 310 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc--------eEeeecCCCCcceeeeeecCCCcc---------
Confidence 7789999999999983 49999999999999999986 788888888889999999998875
Q ss_pred ceEEEEEcccCCcEEEEEeC
Q 041325 431 TSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++.++.||.|-||.++
T Consensus 311 ---~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 311 ---VMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ---hhhhheeccceeeeeee
Confidence 89999999999999873
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=163.32 Aligned_cols=260 Identities=17% Similarity=0.290 Sum_probs=187.5
Q ss_pred eeeeEEeecCCCcceEEEEE--e----CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 64 QCSATLKVKGNSSYIPSLAI--A----GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d----~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
+.+++.....|......++| | ..++|.|+.-|.|+|.|+.++++... +.+|+..|+.|.+.|
T Consensus 78 r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~------------~~ghG~sINeik~~p 145 (385)
T KOG1034|consen 78 RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN------------YRGHGGSINEIKFHP 145 (385)
T ss_pred eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc------------eeccCccchhhhcCC
Confidence 56666665567888888888 2 56899999999999999999987766 789999999999997
Q ss_pred Ce---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 138 DK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 138 ~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+. +++++.|..||+|++++. .++..+... .+|.+.|.
T Consensus 146 ~~~qlvls~SkD~svRlwnI~~~----------------~Cv~VfGG~------------------------egHrdeVL 185 (385)
T KOG1034|consen 146 DRPQLVLSASKDHSVRLWNIQTD----------------VCVAVFGGV------------------------EGHRDEVL 185 (385)
T ss_pred CCCcEEEEecCCceEEEEeccCC----------------eEEEEeccc------------------------ccccCcEE
Confidence 66 999999999999999999 444444322 37999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEE---------------------------eecccccceEEEEEeecCCc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLES---------------------------VKNAHDDAINAIVVSKSNDG 267 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~ 267 (450)
++.|+.+|.++++++.|..|++|++...+.... -...|...|.|+.|. + +
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d 262 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-D 262 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h-h
Confidence 999999999999999999999999983211110 112466677777776 3 4
Q ss_pred EEEEEcCCCcEEEEeCcc-hhh-----hccccchhhhhHhhcccceEEE--EEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 268 FVYTGSADTKIKVWKKLR-AAL-----QVNKKHSLVQTLEKHKSAVTAL--ALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~-~~~-----~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
++++-+-++.|..|..-. .+. ........+..+.-....|+-+ +|.|-++.|+.|...|.|++||++.....
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 889989999999998722 110 0001111222333334445555 45677889999999999999999976432
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCC
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 387 (450)
....+. .......|...+|+ +..|+....|++|.-||..
T Consensus 343 -------~~ttl~--~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 -------KCTTLT--HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -------cCceEE--eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 111111 11123456666665 6699999999999999854
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.1e-22 Score=158.88 Aligned_cols=219 Identities=17% Similarity=0.269 Sum_probs=161.7
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE-----EEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC-----LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
..+.+|.+.|++++|+.||++|++++.|+.|++|++++... ++.- -.-+..+.+.|.|+-..+++.......+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEE
Confidence 45678999999999999999999999999999999987432 2111 1223568899999888788888888899
Q ss_pred EEEeCcchhhhccc----cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 279 KVWKKLRAALQVNK----KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 279 ~vwd~~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
++|.+...+-.... .......-+.|...+-.+-...++.+|++++.|..|.+|+++ |+.+...+. ..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt--------nq 228 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT--------NQ 228 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc--------cc
Confidence 99987654311000 000111123355666667777788999999999999999999 665522211 11
Q ss_pred ccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 355 LRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
+. ..-.+++.+|+++++++..--|++|.+--+.....+....+..++||...|..++|+++.. .
T Consensus 229 ~~---n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-------------r 292 (420)
T KOG2096|consen 229 SS---NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-------------R 292 (420)
T ss_pred cc---ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-------------e
Confidence 11 1224556667899999999999999976443333444566788999999999999999999 9
Q ss_pred EEEcccCCcEEEEEe
Q 041325 435 VYSGSLDCEIKIWQI 449 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l 449 (450)
++|.|.||+++|||.
T Consensus 293 ~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDT 307 (420)
T ss_pred eEEEecCCcEEEeec
Confidence 999999999999996
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-22 Score=158.25 Aligned_cols=244 Identities=16% Similarity=0.178 Sum_probs=172.7
Q ss_pred eEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 130 VKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 130 v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
..|+.|++.+ |++|+.||.|.+||+.+.. ....+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------------------------------------------iar~ls 62 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------------------------------------------IARMLS 62 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------------------------hhhhhh
Confidence 6889998544 9999999999999999872 223345
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+. ...+|....|+|...+.+++.-.+..-.+.++..+.
T Consensus 63 aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 63 AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 799999999999999999999999999999999999999997 789999999999888877777666666676665432
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC-ccceEEEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH-TKAILCLA 366 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 366 (450)
. ..-+...-...+....+..|.+.|++|++|...|.+.++|..+.+++. .++-. ...|..+.
T Consensus 141 h----~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va-------------s~rits~~~IK~I~ 203 (405)
T KOG1273|consen 141 H----SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA-------------SFRITSVQAIKQII 203 (405)
T ss_pred e----eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeee-------------eeeechheeeeEEE
Confidence 1 000010101112223344689999999999999999999999887662 22222 24566666
Q ss_pred Ee--CCeEEEEeCCCeEEEeeCCCCccc-cCCCceeEEEecC--CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-c
Q 041325 367 VV--SNLLFSGSSDNTIRIWRRSSSVTD-HQKGYSCLAVLEG--HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-L 440 (450)
Q Consensus 367 ~~--~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~ 440 (450)
+. ++.++.-+.|+.||.|+++.-... .....++...++. ....-.+++|+.+|. |++.++ .
T Consensus 204 ~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge-------------Yv~a~s~~ 270 (405)
T KOG1273|consen 204 VSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE-------------YVCAGSAR 270 (405)
T ss_pred EeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc-------------EEEecccc
Confidence 65 779999999999999998742110 0000111111111 112345677888887 666555 4
Q ss_pred CCcEEEEE
Q 041325 441 DCEIKIWQ 448 (450)
Q Consensus 441 Dg~i~iw~ 448 (450)
-..++||+
T Consensus 271 aHaLYIWE 278 (405)
T KOG1273|consen 271 AHALYIWE 278 (405)
T ss_pred ceeEEEEe
Confidence 56789996
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=187.19 Aligned_cols=249 Identities=18% Similarity=0.265 Sum_probs=192.5
Q ss_pred CCcceEEEEE--eC----CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEe
Q 041325 74 NSSYIPSLAI--AG----KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAH 144 (450)
Q Consensus 74 h~~~v~~~~~--d~----~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~ 144 (450)
-......++| .+ .+||.|..||.|.+||...-. .............|.+.|..+.|++. .|++|+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhc------cCcchHHHhhhcccCCceeeeeccccCCceeeccC
Confidence 3456677888 22 369999999999999987631 00011111235689999999999854 499999
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCC
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGS 223 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 223 (450)
.||.|.|||+...+...... -....+.|.+++|+. ...
T Consensus 137 ~~geI~iWDlnn~~tP~~~~-----------------------------------------~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPG-----------------------------------------SQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCC-----------------------------------------CCCCcccceEeccchhhhH
Confidence 99999999998763211000 002445799999998 567
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccc-cceEEEEEeecCCcEEEEEcCCC---cEEEEeCcchhhhccccchhhhh
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHD-DAINAIVVSKSNDGFVYTGSADT---KIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.|++++.+|++.|||++..+.+..+..... ..+..++|+|+....+++++.|. .|.+||+|... .+++.
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-------sP~k~ 248 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-------SPLKI 248 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-------Cchhh
Confidence 789999999999999998887777762222 35789999998887888887764 68999987643 36788
Q ss_pred HhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEE
Q 041325 300 LEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSG 375 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~ 375 (450)
+.+|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+ ..+.....++..+.|++ ..++++
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl-------------~~~p~~~nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL-------------GELPAQGNWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe-------------eecCCCCcceeeeeecCCCcchhhhh
Confidence 89999999999999955 89999999999999999999866 56666778899999984 499999
Q ss_pred eCCCeEEEeeCCCC
Q 041325 376 SSDNTIRIWRRSSS 389 (450)
Q Consensus 376 ~~dg~v~iwd~~~~ 389 (450)
+-||.|.||.+...
T Consensus 316 sfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 316 SFDGKISIYSLQGT 329 (1049)
T ss_pred eeccceeeeeeecC
Confidence 99999999998864
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-21 Score=158.72 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=198.4
Q ss_pred CcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeE
Q 041325 75 SSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKI 149 (450)
Q Consensus 75 ~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 149 (450)
..+|..+.| +.+.||||+.|..|++|.++..+...- .........+..|...|+++.|+|++ |++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 467888888 345999999999999998876542210 01112233577999999999999886 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+|................. . -.......+.+|.+.|..++|+|++.++++++
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~-------------k--------------e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLN-------------K--------------EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred EEEEecCcCCccccchhhhC-------------c--------------cceEEEEEecccccchhhhhccCCCceeeeee
Confidence 99987742110000000000 0 01122334557999999999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc-------------chh
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK-------------HSL 296 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~ 296 (450)
.|+.+++||+..|.....+. .|...+..++|.|.+ .++++-+.|...+.+.+...+...... ...
T Consensus 143 ~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s 220 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQLLAILD-DHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKS 220 (434)
T ss_pred ccceEEEEEeccceeEeecc-ccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcce
Confidence 99999999999999988887 899999999999944 478888888766666654332110000 000
Q ss_pred hhhHh--hcccceEEEEEcCCCCEEEEeeC----CCcE-----EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 297 VQTLE--KHKSAVTALALSTDGTVLYSGAC----DRSI-----LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 297 ~~~~~--~~~~~i~~l~~~~~~~~l~~g~~----dg~i-----~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.+-+. ....-...++|+|||.++++... ++.+ ++|+-...+ .+...+..-..+...+
T Consensus 221 ~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~------------rP~~~lp~~~k~~lav 288 (434)
T KOG1009|consen 221 TRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK------------RPAARLPSPKKPALAV 288 (434)
T ss_pred eeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc------------CceeecCCCCcceEEE
Confidence 00000 01122456889999999998643 2222 333322111 0112222222233333
Q ss_pred EEe-------------------CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCC
Q 041325 366 AVV-------------------SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNS 426 (450)
Q Consensus 366 ~~~-------------------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 426 (450)
.++ -.++++....+.|++||.++. .+.-++. .-|-..++.++|++++.
T Consensus 289 r~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~-----~P~~~v~--nihy~~iTDiaws~dg~------ 355 (434)
T KOG1009|consen 289 RFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL-----EPLAVVD--NIHYSAITDIAWSDDGS------ 355 (434)
T ss_pred EeeeeEEEeccccccccccccccceEEEEeecceEEEeccccc-----cceEEEe--eeeeeeecceeecCCCc------
Confidence 222 123444444567999998872 2233333 34788999999999999
Q ss_pred CCCCceEEEEEcccCCcEEE
Q 041325 427 DHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 427 ~~~~~~~~l~s~~~Dg~i~i 446 (450)
+|+..|.||...+
T Consensus 356 -------~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 356 -------VLLVSSTDGFCSL 368 (434)
T ss_pred -------EEEEeccCCceEE
Confidence 8999999997655
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=167.37 Aligned_cols=227 Identities=17% Similarity=0.320 Sum_probs=162.6
Q ss_pred eeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---
Q 041325 65 CSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--- 139 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--- 139 (450)
+-+.|+ ||++.|.|+.| ||.+|++||+|-.+.|||.-..+++.. +-.||.+.|.++.|.|..
T Consensus 42 lE~eL~--GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-----------I~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 42 LEAELT--GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-----------ISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred hhhhhc--cccceecceeecCCCCEEeecCCcceEEeecchhcceeee-----------eecccccceeEEeeeccCCCe
Confidence 344556 99999999999 899999999999999999887776655 457999999999998543
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++|+.|..|+++|+...+.. ..... .......+..|...|..++.
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~------~~d~~---------------------------~~~~~~~~~cht~rVKria~ 155 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEG------GMDHG---------------------------MEETTRCWSCHTDRVKRIAT 155 (758)
T ss_pred EEEeccCcceEEEEeccccccc------ccccC---------------------------ccchhhhhhhhhhhhhheec
Confidence 999999999999999864210 00000 00122334568999999999
Q ss_pred ccCC-CEEEEEeCCCcEEEEecCCCeEEE-------Eeec--ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 219 SSDG-SLLYSTSWDRTFKIWRTSDFRCLE-------SVKN--AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 219 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
.|++ +.+.+++.||+|+-+|+++..... .+.. ..--...++.++|....+|++|+.|-..++||.+...-
T Consensus 156 ~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 156 APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc
Confidence 9987 889999999999999998732211 1110 12245688999999998999999999999999644221
Q ss_pred hccc----------cchhhhhHh-hc-----------ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 289 QVNK----------KHSLVQTLE-KH-----------KSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 289 ~~~~----------~~~~~~~~~-~~-----------~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.... ...++..+. +| -..++-++|+|+|.-|+..-..-.|+++|+..++
T Consensus 236 s~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 236 SFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 1100 001122111 11 1225678899999888777667789999987654
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=152.71 Aligned_cols=271 Identities=17% Similarity=0.204 Sum_probs=195.5
Q ss_pred eEEeecCCCcceEEEEE---eCCEEEEeeCC-------CcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEE
Q 041325 67 ATLKVKGNSSYIPSLAI---AGKLLYGGSSN-------GEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVV 135 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~---d~~~l~tgs~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~ 135 (450)
+.|. .|.+.|..++- |.+.|+|+..+ -.+-||.+............ .....+. .+-+.|.|+.|
T Consensus 57 kvf~--h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl---E~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 57 KVFF--HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL---ECVASLDTEAVGKINCVEW 131 (370)
T ss_pred hhhh--cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh---hHhhcCCHHHhCceeeEEE
Confidence 3444 78899999987 78888887653 24679988654322110000 0000111 34459999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
.|+. +++-. |..|.+|+++..... ...++.. .-.++....
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~---------------vaev~ss----------------------~s~e~~~~f 173 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKI---------------VAEVLSS----------------------ESAEMRHSF 173 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcch---------------heeeccc----------------------cccccccee
Confidence 9877 66555 889999999887320 1111110 001255677
Q ss_pred EEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 214 SALALSS--DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 214 ~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
++-+|+| +++.+++.+ |+++..||+++.++...+...|...|..+.|+|....+|++|+.||.|++||.+..+
T Consensus 174 tsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---- 248 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---- 248 (370)
T ss_pred cccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----
Confidence 8889998 788887765 899999999999999999989999999999999888789999999999999998655
Q ss_pred ccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCc--eeeeCCCC--------------CCceeeecc
Q 041325 292 KKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGN--YIVDGDDD--------------SGHMVLKGA 354 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~--------------~~~~~~~~~ 354 (450)
.+++.+.+|...++++.|+| ..++|++|+.|..|.+|...+-. .-.....+ ...-.....
T Consensus 249 ---~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t 325 (370)
T KOG1007|consen 249 ---FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET 325 (370)
T ss_pred ---ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc
Confidence 37888999999999999999 56789999999999999865321 11111110 011112346
Q ss_pred ccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCC
Q 041325 355 LRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~ 388 (450)
+..|...|.+++|+.. .+|+-+.||++.|=.+..
T Consensus 326 ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 326 YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 7789999999999843 899999999998877653
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=164.71 Aligned_cols=261 Identities=16% Similarity=0.144 Sum_probs=188.8
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-E--EEEeCCCeEEEEEcCCCceeEEeccCccccc
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-L--FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK 171 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l--~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 171 (450)
..+++||+........... ......+.++.|.... | ++.+.|..|++|.-...... .
T Consensus 12 d~~kl~D~s~~~~~~~~~~----------~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~-V--------- 71 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVH----------QTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE-V--------- 71 (673)
T ss_pred CceEEeecccccCcccccc----------CCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCc-c---------
Confidence 4799999987664433111 1112248899998555 4 44566888999976544110 0
Q ss_pred ceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 172 YYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
..+.. ...+.-.|++......++++|+..+.|+|||++...+.+.+. .
T Consensus 72 --p~~~k-----------------------------~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-d 119 (673)
T KOG4378|consen 72 --PRVRK-----------------------------LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-D 119 (673)
T ss_pred --ceeec-----------------------------cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-C
Confidence 00000 011234455555566899999999999999999555555555 8
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc-ccceEEEEEcCCCC-EEEEeeCCCcEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH-KSAVTALALSTDGT-VLYSGACDRSIL 329 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~-~l~~g~~dg~i~ 329 (450)
|...|+++.++. .+.+|++++..|.|.+-.+.++. ....+... ...+.-+.|+|..+ +|.+++.+|.|.
T Consensus 120 h~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~--------~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 120 HQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQ--------KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred CcceeEEEEecC-CcceeEEeccCCcEEEEecccCc--------cccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 999999999987 55599999999999999987765 33344333 34566889999766 456788999999
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 406 (450)
+||+....+++ .....|..+...++|++. +|++.+.|..|.+||+.+. .....+. .
T Consensus 191 lwDv~g~sp~~------------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~--------~s~~~l~-y 249 (673)
T KOG4378|consen 191 LWDVQGMSPIF------------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ--------ASTDRLT-Y 249 (673)
T ss_pred EEeccCCCccc------------chhhhccCCcCcceecCCccceEEEecccceEEEeecccc--------cccceee-e
Confidence 99998765442 456779999999999853 9999999999999999863 2222232 4
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..+.+.++|.++|. +|+.|...|.|..||||
T Consensus 250 ~~Plstvaf~~~G~-------------~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 250 SHPLSTVAFSECGT-------------YLCAGNSKGELIAYDMR 280 (673)
T ss_pred cCCcceeeecCCce-------------EEEeecCCceEEEEecc
Confidence 56889999999999 99999999999999997
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=169.38 Aligned_cols=265 Identities=20% Similarity=0.297 Sum_probs=189.7
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
+.+..++. .|...|++++| ....|++++.||.+.+|+++... ........+...+.+|.++|.|++...+.
T Consensus 284 w~ik~tl~--s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~----~s~~~~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 284 WNIKFTLR--SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK----KSAEKDVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred cceeeeee--cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC----CccccceeeeEEEecccCceEEEEecCCce
Confidence 34445666 89999999999 68999999999999999994411 12233345567799999999999998766
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++|+.||+|+.|++......+- .+. -......+.+|.+.|+.+++
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~d---------s~d------------------------p~vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDD---------SYD------------------------PSVLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred EEEeeccCceeeeeccCCCCCccc---------ccC------------------------cchhccceeccccceeeeee
Confidence 99999999999999873311000 000 00112245689999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
++....|++++.||++++|+...... ..+.. ...+...++.+-.....+.++....+.-.++++.... .+
T Consensus 405 s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s--------~~ 475 (577)
T KOG0642|consen 405 SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS--------DL 475 (577)
T ss_pred cccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh--------he
Confidence 99999999999999999999877665 33331 2233445666653232233433333333333333222 11
Q ss_pred hhHh-------hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 298 QTLE-------KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 298 ~~~~-------~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
..+. .....+..+.++|.+.+.+++..|+.|+++|..+++.+ .....|...++++++.++
T Consensus 476 ~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l-------------~s~~a~~~svtslai~~n 542 (577)
T KOG0642|consen 476 LIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL-------------HSMVAHKDSVTSLAIDPN 542 (577)
T ss_pred eeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc-------------hheeeccceecceeecCC
Confidence 1111 11245677889999999999999999999999998865 678889999999999865
Q ss_pred --eEEEEeCCCeEEEeeCCC
Q 041325 371 --LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~ 388 (450)
+|++++.|+.+++|.+..
T Consensus 543 g~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CceEEeecCCceeehhhccc
Confidence 999999999999999875
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=162.41 Aligned_cols=209 Identities=18% Similarity=0.177 Sum_probs=167.0
Q ss_pred eeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 205 TWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSDF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
...-+.++|.+++|+|. .+++++|..-|.|-+||+.+. ..+..+. .|..+|.++.|+|.+...+++.+.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCcee
Confidence 34458889999999994 368899999999999999522 2233444 7999999999999988899999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
++-|++.... ..+.........+.++.|+.+...++.+..=|...+||++++..- ...+..|
T Consensus 260 R~~D~~~~i~------e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~------------~~~~~lh 321 (498)
T KOG4328|consen 260 RLQDFEGNIS------EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE------------YENLRLH 321 (498)
T ss_pred eeeeecchhh------HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc------------chhhhhh
Confidence 9999977542 234444445667888899988888888888889999999986531 1455668
Q ss_pred ccceEEEEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 359 TKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 359 ~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
...|.++++++ .+|+|++.|++++|||++.-. ....++.....|...|.+..|+|.+. .|
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~----~K~sp~lst~~HrrsV~sAyFSPs~g-------------tl 384 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR----GKASPFLSTLPHRRSVNSAYFSPSGG-------------TL 384 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhc----CCCCcceecccccceeeeeEEcCCCC-------------ce
Confidence 88999999985 499999999999999998631 11123445567999999999999998 79
Q ss_pred EEcccCCcEEEEEe
Q 041325 436 YSGSLDCEIKIWQI 449 (450)
Q Consensus 436 ~s~~~Dg~i~iw~l 449 (450)
+|.+.|..|+|||.
T Consensus 385 ~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDS 398 (498)
T ss_pred EeeccCCceEEeec
Confidence 99999999999985
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=167.06 Aligned_cols=308 Identities=19% Similarity=0.297 Sum_probs=226.7
Q ss_pred eeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---
Q 041325 65 CSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--- 139 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--- 139 (450)
+...|. +|.+.|..|.| .|..|++|+.|..|.+||...+..... ...+|...|..-.|.|..
T Consensus 134 l~~kL~--~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~-----------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 134 LQKKLN--KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS-----------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred hhhccc--CCCCccceeeecccCceeeccCccceEEeehhhccCcccc-----------cccccccchhhhhccCCCCCc
Confidence 445566 99999999999 699999999999999999988876554 235888888888886543
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++++.||.|++=.+...... .....+..|.++|.-++.
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~----------------------------------------e~t~rl~~h~g~vhklav 240 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYV----------------------------------------ENTKRLAPHEGPVHKLAV 240 (559)
T ss_pred CceeccccCceeeeeeccccce----------------------------------------ecceecccccCccceeee
Confidence 999999999998876544210 112233469999999999
Q ss_pred ccC-CCEEEEEeCCCcEEEEecCCCeEEEEee--ccccc---ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 219 SSD-GSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDD---AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 219 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
-|+ ..-|.+++.|+.+.-.|++.......+. ..+.. ....++..|.+.+.+++++.|..+++||.+.-......
T Consensus 241 ~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n 320 (559)
T KOG1334|consen 241 EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN 320 (559)
T ss_pred cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc
Confidence 994 5569999999999999998765443332 12333 57889999988889999999999999998764421110
Q ss_pred cchhhhhH------hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc--ceEE
Q 041325 293 KHSLVQTL------EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK--AILC 364 (450)
Q Consensus 293 ~~~~~~~~------~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~ 364 (450)
..+..+ ......|++++|+.++.-|++...|-.|+++.-..+.--...............+++|.. .|.+
T Consensus 321 --~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg 398 (559)
T KOG1334|consen 321 --GVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG 398 (559)
T ss_pred --chhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccce
Confidence 011211 133457999999988877777788888999954432210000001111223344778864 4778
Q ss_pred EEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 365 LAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 365 ~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+.|-| +++++|+.-|.|.||+-.++ +.+..+.+-..-|+||.-+|-.. +|||.|-|
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~--------eii~~MegDr~VVNCLEpHP~~P-------------vLAsSGid 457 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKTG--------EIIRFMEGDRHVVNCLEPHPHLP-------------VLASSGID 457 (559)
T ss_pred eeeccCccceEEecCccceEEEEecchh--------HHHHHhhcccceEeccCCCCCCc-------------hhhccCCc
Confidence 88775 49999999999999998874 67777777777999999999998 99999999
Q ss_pred CcEEEEE
Q 041325 442 CEIKIWQ 448 (450)
Q Consensus 442 g~i~iw~ 448 (450)
..|+||.
T Consensus 458 ~DVKIWT 464 (559)
T KOG1334|consen 458 HDVKIWT 464 (559)
T ss_pred cceeeec
Confidence 9999995
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=170.08 Aligned_cols=293 Identities=20% Similarity=0.265 Sum_probs=200.3
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe----EEEEeCCCeEEEEEcCCCcee
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK----LFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~~dg~i~iw~~~~~~~~ 160 (450)
...++++...-.|+|||.+.++...-+.... .....|+.+.+-++. +++|+.||.||||+--....
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~---------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~- 1145 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGA---------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW- 1145 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCC---------CCCCccceeeeecccchhheeeeccCceEEEeccccccc-
Confidence 4567888777899999999888654422211 334689999987544 99999999999997432210
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
.+. +.+..... ..-.+.+..+.-.-++|.....+|++++.-..|+|||..
T Consensus 1146 -------~~~---eLVTaw~~--------------------Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1146 -------KKP---ELVTAWSS--------------------LSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred -------CCc---eeEEeecc--------------------ccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 000 00000000 000011111122456787765566666668899999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc--eEEEEEcCCCC-
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA--VTALALSTDGT- 317 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~~~~~~- 317 (450)
...++..+..+....++++.-+-...+++++|..||.|++||.+... ....+...+.|+.. |..+.+.++|-
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-----~ds~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP-----PDSLVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC-----ccccceeecccCCcccceeEEeecCCCc
Confidence 98888888877778889988777677799999999999999987754 22356666778777 99999998765
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc--c-ceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccc
Q 041325 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT--K-AILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTD 392 (450)
Q Consensus 318 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 392 (450)
.|++|+.||.|++||++..... .......|. + ..+++..+.. .+|+|+. +.|+||++......
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e-----------~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKE-----------TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred ceeeeccCCeEEEEecccCccc-----------ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc
Confidence 4999999999999999973111 001122222 2 5788888754 8888888 99999998753221
Q ss_pred cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 393 HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..+.. -..+....+.+.+++|+|..- ++|+|+.|.+|.||.-
T Consensus 1339 ~~k~n--~~F~~q~~gs~scL~FHP~~~-------------llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1339 IIKYN--PGFMGQRIGSVSCLAFHPHRL-------------LLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccccC--cccccCcCCCcceeeecchhH-------------hhhhccCCceEEEeec
Confidence 11100 111222356789999999988 8999999999999963
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=147.07 Aligned_cols=294 Identities=19% Similarity=0.219 Sum_probs=202.2
Q ss_pred CCcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE------
Q 041325 10 PCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI------ 83 (450)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~------ 83 (450)
|+.=.|+..|+|+++-+.+.+..+.++.- ..|.-..+... ..+...+.++...+ .....|...+|
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~----nlP~dlys~~~--~~~~~~~~~~~~r~---~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCW----NLPFDLYSKKA--DGPLNFSKHLSYRY---QEGETVYDYCWYSRMKS 118 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEE----ecChhhcccCC--CCccccccceeEEe---ccCCEEEEEEeeecccc
Confidence 77778999999999999999888888652 11111111110 11111122222222 23455666666
Q ss_pred ---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC---ceEEEEEeCCe-EEEEeCCCeEEEEEcCC
Q 041325 84 ---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD---AVKSLVVLGDK-LFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 84 ---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~-l~s~~~dg~i~iw~~~~ 156 (450)
+..++|+.+.|.-|++||.-+++....... ..|.+ ...+|+|++|+ -+-++..+.|+++|+..
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~----------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~R 188 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA----------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSR 188 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhh----------hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccC
Confidence 367899999999999999999986554221 22332 45789999998 55566778999999943
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFK 235 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 235 (450)
.-.. .....++. ..-.+..+-+.+++|+| +.+.++.|+....+-
T Consensus 189 pGr~------------c~vy~t~~-----------------------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 189 PGRD------------CPVYTTVT-----------------------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred CCCC------------Ccchhhhh-----------------------cccccccceeeeeeccCCCCcceeeecccceee
Confidence 3110 00000000 00113466789999999 667999999999999
Q ss_pred EEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc-ceEEEE--E
Q 041325 236 IWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS-AVTALA--L 312 (450)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~--~ 312 (450)
||.-..+.++..+. +|.+.|+.+.|.++++.++.-+-.|..|..||++... .++..+..|.. .-..|. .
T Consensus 234 iy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-------~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-------DPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred eEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-------chhhhhhhhccCccceEEEec
Confidence 99999889888887 9999999999999777444444558899999998654 35666666655 333444 4
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 313 STDGTVLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
.|++++|++|+.||.|++||+.. +.. ...+..|...++.++++|- ++++++..
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~-------------~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNE-------------VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCc-------------ccccccccccccceecCcccceeeeccCc
Confidence 67999999999999999999987 432 2566778889999999976 55555543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-20 Score=160.68 Aligned_cols=246 Identities=17% Similarity=0.242 Sum_probs=180.6
Q ss_pred CCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecC
Q 041325 116 GDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLAN 193 (450)
Q Consensus 116 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (450)
+......+.||++.|.+|...+.+ |++|+.||+|++|.+.++ .|+.+...
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----------------Rcvr~~~~------------ 440 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----------------RCVRTVQF------------ 440 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----------------eEEEEEee------------
Confidence 344567799999999999998766 999999999999999999 55555542
Q ss_pred ceEEEeecceeeeecCCCceEEEEEccCCC--EEEEEeCC--------------------------------CcEEEEec
Q 041325 194 NYVQVRRHKKCTWVHHVDTVSALALSSDGS--LLYSTSWD--------------------------------RTFKIWRT 239 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d--------------------------------g~i~iwd~ 239 (450)
.+.|.|++|+|.++ .||++-.+ +.+..|.-
T Consensus 441 ----------------d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~ 504 (733)
T KOG0650|consen 441 ----------------DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSR 504 (733)
T ss_pred ----------------cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeech
Confidence 23577777777443 23333222 22333332
Q ss_pred CC---CeEEEEeecccccceEEEEEeecCCcEEEEEcC---CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc
Q 041325 240 SD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 240 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
.. ++.-..+...|...|..+.|+..++ +|++... ...|.|.++.... ....|....+.|.++.|+
T Consensus 505 ~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~--------sQ~PF~kskG~vq~v~FH 575 (733)
T KOG0650|consen 505 ASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK--------SQSPFRKSKGLVQRVKFH 575 (733)
T ss_pred hhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc--------ccCchhhcCCceeEEEec
Confidence 21 1100011225788999999997555 6666544 3578888886655 344555667889999999
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCcc
Q 041325 314 TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVT 391 (450)
Q Consensus 314 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 391 (450)
|...+|++++ ...|+|||+..+..+ ..+......|..++.+ |+.|+.|+.|+.+..+|+.-+
T Consensus 576 Ps~p~lfVaT-q~~vRiYdL~kqelv-------------KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls-- 639 (733)
T KOG0650|consen 576 PSKPYLFVAT-QRSVRIYDLSKQELV-------------KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-- 639 (733)
T ss_pred CCCceEEEEe-ccceEEEehhHHHHH-------------HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC--
Confidence 9999998887 467999999875533 4555566778888887 579999999999999998854
Q ss_pred ccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 392 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.++.+.+..|...+++|+|++.-. ++++|+.||++.|+-
T Consensus 640 -----skPyk~lr~H~~avr~Va~H~ryP-------------Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 640 -----SKPYKTLRLHEKAVRSVAFHKRYP-------------LFASGSDDGTVIVFH 678 (733)
T ss_pred -----cchhHHhhhhhhhhhhhhhccccc-------------eeeeecCCCcEEEEe
Confidence 356778889999999999999999 999999999998873
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=142.95 Aligned_cols=279 Identities=15% Similarity=0.184 Sum_probs=192.9
Q ss_pred CcceEEEEE-----eCCEEEEeeC----CCcEEEecCC--CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe----
Q 041325 75 SSYIPSLAI-----AGKLLYGGSS----NGEIRAWNRD--PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---- 139 (450)
Q Consensus 75 ~~~v~~~~~-----d~~~l~tgs~----dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---- 139 (450)
.-.+.++.| .+.+||.|+. .+.|.|-.++ +++.+.. .-..|.-+++.+.|.|+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~-----------a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED-----------ANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc-----------CCCCCCCCccceEecCCccccC
Confidence 345777777 2678888874 3556655444 2222221 013788899999998765
Q ss_pred ---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 140 ---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 140 ---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
|++++ ..+|+|.+...+... +....+.. ..-..+..++++.
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~------------~~~~~L~~----------------------~kns~~~aPlTSF 156 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRV------------ELQSVLNN----------------------NKNSEFCAPLTSF 156 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCce------------ehhhhhcc----------------------CcccccCCccccc
Confidence 44433 479999998542110 11111110 0112466799999
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEecCCCeE--EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 217 ALSS-DGSLLYSTSWDRTFKIWRTSDFRC--LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 217 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.|+. +.+++.+++-|-+..|||++++.. +++....|...|..++|...+.+++++.+.||.+|+||++..+.
T Consensus 157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH----- 231 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH----- 231 (364)
T ss_pred ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-----
Confidence 9998 888999999999999999998733 33333389999999999976677899999999999999987541
Q ss_pred chhhhhHhhcccceEEEEEcC-CCCEEEEeeCC-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 294 HSLVQTLEKHKSAVTALALST-DGTVLYSGACD-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
...+.+-.....+...++|++ |-+++++-..| ..|.|.|++... .+...+.+|.+.|++++|.+.
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~------------tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC------------TPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC------------cceehhhcCcccccceEecCCC
Confidence 112222222256778899988 45677775555 569999998543 245789999999999999854
Q ss_pred --eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 371 --LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.|++++.|..+.+||+.....+ ....++..+. -.+.|+.+.|++...
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~~--~~~dPilay~-a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPRE--NGEDPILAYT-AGGEVNQIQWSSSQP 348 (364)
T ss_pred CceeeecCCcceEEEEeccccccc--CCCCchhhhh-ccceeeeeeecccCC
Confidence 9999999999999999864221 1122333333 467899999997665
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.4e-20 Score=151.49 Aligned_cols=208 Identities=20% Similarity=0.314 Sum_probs=160.3
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCC
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~d 146 (450)
||+++|..++| +...||+||.|.+|.||.+..+.+... ...+...+.+|...|--++|+|.- |++++.|
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-----ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-----LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccC-----cccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 99999999999 799999999999999999987664333 224556789999999999999765 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
.+|.+||+.+++ .+.++ .|.+.|.++.|+.+|.+|+
T Consensus 154 n~v~iWnv~tge----------------ali~l----------------------------~hpd~i~S~sfn~dGs~l~ 189 (472)
T KOG0303|consen 154 NTVSIWNVGTGE----------------ALITL----------------------------DHPDMVYSMSFNRDGSLLC 189 (472)
T ss_pred ceEEEEeccCCc----------------eeeec----------------------------CCCCeEEEEEeccCCceee
Confidence 999999999983 22222 3999999999999999999
Q ss_pred EEeCCCcEEEEecCCCeEEEEeeccccc-ceEEEEEeecCCcEEEEEc----CCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDD-AINAIVVSKSNDGFVYTGS----ADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+.+.|..|+|||.++++.+..-. .|.+ .-..+.|.. ++.+++.+ .+..+.+||..+-+ . .-....+.
T Consensus 190 TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~nl~----e-P~~~~elD 261 (472)
T KOG0303|consen 190 TTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPNNLE----E-PIALQELD 261 (472)
T ss_pred eecccceeEEEcCCCCcEeeecc-cccCCCcceeEEec--cCceeeeccccccccceeccCccccc----C-cceeEEec
Confidence 99999999999999999988875 5554 445555664 33355544 36789999976543 1 11223333
Q ss_pred hcccceEEEEEcCCCCEEE-EeeCCCcEEEEEcCCCce
Q 041325 302 KHKSAVTALALSTDGTVLY-SGACDRSILVWERDQGNY 338 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~-~g~~dg~i~vwd~~~~~~ 338 (450)
..+.|.---|.+|.+.++ +|-.|+.|+.|.+....+
T Consensus 262 -tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 262 -TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred -cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 345566666788888765 455799999999987653
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=162.21 Aligned_cols=275 Identities=12% Similarity=0.146 Sum_probs=195.1
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEeCCCeEEEEEcCCCceeEEeccCcccc
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
++.+.||++........ .......|+++.|++. .++.|..+|.|.+||+.......
T Consensus 221 ~~~~~vW~~~~p~~Pe~------------~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------- 279 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPEL------------VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------- 279 (555)
T ss_pred CceEEEEecCCCCCceE------------EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------
Confidence 35799999987632111 2234568999999854 48899999999999999873210
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCCCeEEE-E
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFRCLE-S 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~ 247 (450)
... .......|..++..+.|..+. .-+++++.||.|..|+++...... .
T Consensus 280 -----~s~-----------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 280 -----PSG-----------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred -----Ccc-----------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 000 001112588899999997643 459999999999999887543211 1
Q ss_pred e-----e-----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 248 V-----K-----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 248 ~-----~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
. . ......++++.|.+.....+++|+.+|.|.--+............+....+..|.++|.++.++|-+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~ 411 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP 411 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence 1 0 02234689999999888899999999998774332222111112233445667889999999999766
Q ss_pred EEEEeeCCCcEEEEEcC-CCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc
Q 041325 318 VLYSGACDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 318 ~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
.++..+.|-+++||... ...++ ..+..+...+++++|++. .++++..||.|.+||+...
T Consensus 412 k~fls~gDW~vriWs~~~~~~Pl-------------~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~---- 474 (555)
T KOG1587|consen 412 KNFLSVGDWTVRIWSEDVIASPL-------------LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD---- 474 (555)
T ss_pred ceeeeeccceeEeccccCCCCcc-------------hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc----
Confidence 55555559999999987 43332 456667777999999954 8999999999999999853
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
...++.....+....+.+.|+++++ +|+.|...|.+++|+|
T Consensus 475 --~~~Pv~s~~~~~~~l~~~~~s~~g~-------------~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 475 --DEEPVLSQKVCSPALTRVRWSPNGK-------------LLAVGDANGTTHILKL 515 (555)
T ss_pred --ccCCcccccccccccceeecCCCCc-------------EEEEecCCCcEEEEEc
Confidence 2344555555566778888888888 9999999999999997
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=143.76 Aligned_cols=207 Identities=18% Similarity=0.256 Sum_probs=160.1
Q ss_pred cCCCceEEEEEccCC-----CEEEEEeCCCcEEEEecCC--CeEE--EEe----ecccccceEEEEEeecCCcEEEEEcC
Q 041325 208 HHVDTVSALALSSDG-----SLLYSTSWDRTFKIWRTSD--FRCL--ESV----KNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~--~~~~--~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
.|.-+++.+.|.|+. ++||+++ ..+|+|.+.. .+.. ..+ ...+..++++..|+..+.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999965 3555554 5899999873 2211 111 12456789999999888889999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
|-+..|||++++. .......+..|..+|..++|...+ +.+++.+.||.+++||++..+.. ....
T Consensus 172 DTTCTiWdie~~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------TIIY 236 (364)
T KOG0290|consen 172 DTTCTIWDIETGV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------TIIY 236 (364)
T ss_pred cCeEEEEEEeecc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc----------eEEe
Confidence 9999999998763 111344566899999999999855 57899999999999999975422 1222
Q ss_pred cccCCccceEEEEEe---CCeEEEEeCCC-eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCC
Q 041325 354 ALRGHTKAILCLAVV---SNLLFSGSSDN-TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~---~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
+-.....+...++|+ ++++|+-..|+ .|.|.|++.. ..++..+.+|.+.|+.++|.|....
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-------~tpva~L~~H~a~VNgIaWaPhS~~-------- 301 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-------CTPVARLRNHQASVNGIAWAPHSSS-------- 301 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-------CcceehhhcCcccccceEecCCCCc--------
Confidence 222235677889997 45888877764 5999999875 5678899999999999999998875
Q ss_pred CceEEEEEcccCCcEEEEEeC
Q 041325 430 STSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.|+|+|+|..+.||||.
T Consensus 302 ----hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 302 ----HICTAGDDCQALIWDLQ 318 (364)
T ss_pred ----eeeecCCcceEEEEecc
Confidence 89999999999999984
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-21 Score=164.99 Aligned_cols=294 Identities=14% Similarity=0.212 Sum_probs=193.9
Q ss_pred CCEEEEeeCCCcEEEe--cCCCCCceeeee--------cCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEE
Q 041325 85 GKLLYGGSSNGEIRAW--NRDPNNYVNITS--------TDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVW 152 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw--~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw 152 (450)
....++...|...++| ++....+..... ........+.+..|.+.|+.++|.+.. |++++.||++++|
T Consensus 242 k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W 321 (577)
T KOG0642|consen 242 KSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW 321 (577)
T ss_pred CCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence 4566777778888888 554433322222 011122334677899999999998766 9999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
+++.... .. ...-.+...|.+|.++|.|+++.+++..+++|+.||
T Consensus 322 nLqk~~~--------s~---------------------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 322 NLQKAKK--------SA---------------------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred hhcccCC--------cc---------------------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 9943210 00 011134556779999999999999999999999999
Q ss_pred cEEEEecCC---------CeEE-EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 233 TFKIWRTSD---------FRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 233 ~i~iwd~~~---------~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
+|+.|++.. ...+ ..+. +|.+.++.+++++..+ .|++++.||++++|+..... .+......
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~-------~~~f~~~~ 437 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES-------PCTFGEPK 437 (577)
T ss_pred eeeeeccCCCCCcccccCcchhcccee-ccccceeeeeeccccc-ceeeecCCceEEeeccCCcC-------ccccCCcc
Confidence 999996542 1122 2334 8999999999998554 79999999999999975543 01111111
Q ss_pred cccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC
Q 041325 303 HKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 303 ~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
..+...++.+-... ...++...-+.-.+++......+..+..... ........+..+.+++ ++.+++..|+
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~------~~~~~~~~in~vVs~~~~~~~~~~hed~ 511 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS------PGPRRYPQINKVVSHPTADITFTAHEDR 511 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC------CcccccCccceEEecCCCCeeEecccCC
Confidence 22334555554322 1222222222233333333322211111000 0000112345555553 4899999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+++|..++ ..+.....|...++++++.|++. +|++++.||.+++|.+
T Consensus 512 ~Ir~~dn~~~--------~~l~s~~a~~~svtslai~~ng~-------------~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 512 SIRFFDNKTG--------KILHSMVAHKDSVTSLAIDPNGP-------------YLMSGSHDGSVRLWKL 560 (577)
T ss_pred ceeccccccc--------ccchheeeccceecceeecCCCc-------------eEEeecCCceeehhhc
Confidence 9999998875 77888889999999999999999 9999999999999986
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-20 Score=161.17 Aligned_cols=269 Identities=15% Similarity=0.223 Sum_probs=199.8
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+--++|.|+++.+..+.. .+.-.+....+..+++|+ ||.+.|.|++| ||+++|+
T Consensus 14 ci~d~afkPDGsqL~lAAg---------------------~rlliyD~ndG~llqtLK--gHKDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG---------------------SRLLVYDTSDGTLLQPLK--GHKDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred chheeEECCCCceEEEecC---------------------CEEEEEeCCCcccccccc--cccceEEEEEEccCCceecc
Confidence 4445566666666655433 344455666778899999 99999999999 8999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
|+.|..|.+|+..-....+ ..|++.|.|+.|+|-. |++++- ...-+|..+.......
T Consensus 71 G~aDK~VI~W~~klEG~Lk--------------YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~------ 129 (1081)
T KOG1538|consen 71 GSADKSVIIWTSKLEGILK--------------YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH------ 129 (1081)
T ss_pred CCCceeEEEecccccceee--------------eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh------
Confidence 9999999999865444333 4899999999999866 777765 4577888765521100
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
.....+.+++|..||++++.|-.+|+|.+-+-.. +....+
T Consensus 130 ---------------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I 169 (1081)
T KOG1538|consen 130 ---------------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKI 169 (1081)
T ss_pred ---------------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEE
Confidence 1234788999999999999999999999987643 333333
Q ss_pred e--cccccceEEEEEeecCC----cEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 249 K--NAHDDAINAIVVSKSND----GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 249 ~--~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
. .+..++|.+++|+|... ..+++.....++.+|.+.... +..-....-...|+.+.++|.+++.|
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~---------Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ---------IGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---------ecccccCCCCchhheeccCCcEEEEc
Confidence 3 24678999999998543 257888888888888764432 22222334456789999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
+.|+.+++|..+ |- ...+......+|+.+...|+ +++.|+.||+|..|++..
T Consensus 241 Gsdk~L~~fTR~-Gv-------------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 241 GSDKQLSLFTRD-GV-------------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCCceEEEeec-Ce-------------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 999999999754 32 22455556788988888754 999999999999998754
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=162.66 Aligned_cols=361 Identities=15% Similarity=0.166 Sum_probs=210.7
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
..+.+.+.++.+|. .|...|..++. ++.+++|||.||+|++||........ ........+...+..+.++
T Consensus 1032 ~gW~p~G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCCCccceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEeccCCceEEE
Confidence 34578899999998 99999999988 46899999999999999986533110 0111122233345667777
Q ss_pred EEe--CCeEEEEeCCCeEEEEEcCCCceeEEe-----ccCcccccceeeeeeccCCCcc-eeEeeecCceEEEeecce--
Q 041325 134 VVL--GDKLFSAHQDHKIRVWKIDNNTSAYYS-----TSGKLKNKYYERIATLPTLNDR-FTKCFLANNYVQVRRHKK-- 203 (450)
Q Consensus 134 ~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 203 (450)
... ++.++.++.||.|++.+++........ .........+..+......... ..+.......+..++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 665 455999999999999999874221111 1111111222222222222222 222222223333332211
Q ss_pred ----eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC--cE-EEEEc-CC
Q 041325 204 ----CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND--GF-VYTGS-AD 275 (450)
Q Consensus 204 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~-l~~~~-~d 275 (450)
.......+.|++++.+|.++++++|...|.+.+||++-+..+..+..++..+++.+..+|... .. +.++. ..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 122335678999999999999999999999999999999999999877888999999888665 34 44444 58
Q ss_pred CcEEEEeCcchhhhccc----cchhhhhHh-------hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCC
Q 041325 276 TKIKVWKKLRAALQVNK----KHSLVQTLE-------KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDD 344 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~----~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 344 (450)
+.|.+|++.++.++..- ....+.... .+.-......+..-+..+++|+.|..|+.||....+...
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss---- 1340 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS---- 1340 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc----
Confidence 89999999887643211 000111111 011112223334345689999999999999988644220
Q ss_pred CCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeE-EEeeCCCCcc-----ccCCCceeEEEecCCCcceEEEEEEe
Q 041325 345 DSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTI-RIWRRSSSVT-----DHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v-~iwd~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
....+..........+ ...++.|+.--.. .+.....+.. ...........-..|..+|+++++..
T Consensus 1341 --------~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~ 1412 (1431)
T KOG1240|consen 1341 --------YAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLK 1412 (1431)
T ss_pred --------ccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhc
Confidence 0111111111111111 1122222211000 0011111000 00000111222346889999999887
Q ss_pred cCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 418 DSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.... +|++++.||.|+||.
T Consensus 1413 ~~q~------------llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1413 SEQP------------LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCcc------------EEEEecCCCeeeecC
Confidence 7653 899999999999995
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-19 Score=158.24 Aligned_cols=268 Identities=15% Similarity=0.234 Sum_probs=202.4
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEE
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVW 152 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw 152 (450)
.|..++| ||..|+.+.. ..+.+||.+.+..... +.+|.+.|.+++|+.|+ +++|+.|+.|.+|
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqt------------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQP------------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccc------------cccccceEEEEEEccCCceeccCCCceeEEEe
Confidence 7888999 8888887755 5799999999987776 88999999999999776 9999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
+-.-.... -..|.+.|.|+.|+|-...|++++. .
T Consensus 81 ~~klEG~L---------------------------------------------kYSH~D~IQCMsFNP~~h~LasCsL-s 114 (1081)
T KOG1538|consen 81 TSKLEGIL---------------------------------------------KYSHNDAIQCMSFNPITHQLASCSL-S 114 (1081)
T ss_pred ccccccee---------------------------------------------eeccCCeeeEeecCchHHHhhhcch-h
Confidence 87654211 1149999999999998888998875 3
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
..-+|........ .. .....+.+.+|..+ +.+++.|-.||+|.+-+-...+ ...+..-.+.+++|++++|
T Consensus 115 dFglWS~~qK~V~-K~--kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEe------k~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 115 DFGLWSPEQKSVS-KH--KSSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEE------KVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred hccccChhhhhHH-hh--hhheeEEEeeecCC-CcEEEEeccCceEEeecCCCCc------ceEEeCCCCCCCCceEEEe
Confidence 5678887654322 22 24567788888863 4489999999999998643221 1123333457889999999
Q ss_pred cCCC-----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEee
Q 041325 313 STDG-----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 313 ~~~~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 385 (450)
+|+. ..+++.....++..|.+. |+.+ ..-..-.-.-.|+++. |.+++.|+.|+.+.+|-
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~I-------------gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLS-GKQI-------------GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEec-ceee-------------cccccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 9953 477888888888888775 3322 1111111223566665 66999999999999997
Q ss_pred CCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+ ...+.++......|+.++..|+++ .++.|+.||+|-.|++
T Consensus 251 R~---------GvrLGTvg~~D~WIWtV~~~PNsQ-------------~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 251 RD---------GVRLGTVGEQDSWIWTVQAKPNSQ-------------YVVVGCQDGTIACYNL 292 (1081)
T ss_pred ec---------CeEEeeccccceeEEEEEEccCCc-------------eEEEEEccCeeehhhh
Confidence 55 256677777788999999999999 9999999999988875
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=147.49 Aligned_cols=254 Identities=16% Similarity=0.224 Sum_probs=174.3
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeee---cCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEE
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITS---TDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIR 150 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~ 150 (450)
.|+..+||..++++--. -.-.+|+...+....... ...-....-...||+++|..++|+|-. +++|+.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPk-fiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPK-FVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCc-eEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEE
Confidence 47777776555443321 122355554443221111 111111222467999999999998544 99999999999
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEe
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTS 229 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 229 (450)
+|++..+... .. -..+...+.+|...|--++|+| ..+.|++++
T Consensus 108 vW~IPe~~l~----------------~~--------------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 108 VWQIPENGLT----------------RD--------------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred EEECCCcccc----------------cC--------------------cccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 9999876210 00 0134556778999999999999 567889999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc-ceE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS-AVT 308 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~i~ 308 (450)
.|.+|.+||+.+++.+..+. |.+.|.++.|+.+ ..++++++.|+.|||||.++++ .+..-.+|.+ .-.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~--------~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT--------VVSEGVAHEGAKPA 220 (472)
T ss_pred CCceEEEEeccCCceeeecC--CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc--------EeeecccccCCCcc
Confidence 99999999999999988886 9999999999984 4489999999999999998887 4554445553 345
Q ss_pred EEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEE
Q 041325 309 ALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIR 382 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~ 382 (450)
.+-|-.+|.++.+|. .+..+-+||..+-+.. .....+.. +..|.---|+++ ..++|-.|+.||
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP----------~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP----------IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCc----------ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceE
Confidence 566777888666664 3678999998754311 11122322 334444445544 456777899999
Q ss_pred EeeCCCC
Q 041325 383 IWRRSSS 389 (450)
Q Consensus 383 iwd~~~~ 389 (450)
.|.+...
T Consensus 290 YyEit~d 296 (472)
T KOG0303|consen 290 YFEITNE 296 (472)
T ss_pred EEEecCC
Confidence 9998864
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-17 Score=151.31 Aligned_cols=377 Identities=19% Similarity=0.248 Sum_probs=238.3
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEEe---C--CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe--
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAIA---G--KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-- 124 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d---~--~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (450)
......++..++++++.|. +|..+++.+.++ . .++++++.||.|++||...+.+........+........
T Consensus 36 ~~~V~VyS~~Tg~~i~~l~--~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~ 113 (792)
T KOG1963|consen 36 GNFVKVYSTATGECITSLE--DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQ 113 (792)
T ss_pred CCEEEEEecchHhhhhhcc--cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhH
Confidence 3556788899999999888 999999999992 3 678899999999999999888766543332211111000
Q ss_pred ---------------------cC----CC-------------------ceEEEEEeCCe-EEEEeCCCeEEEEEcCCCce
Q 041325 125 ---------------------GN----GD-------------------AVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 125 ---------------------~h----~~-------------------~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~ 159 (450)
.+ .. .-.+|.+++.+ +.....+..+.+|+......
T Consensus 114 a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~ 193 (792)
T KOG1963|consen 114 ADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK 193 (792)
T ss_pred hCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccce
Confidence 00 00 01223333333 44444455677777776541
Q ss_pred eEEeccCcccccc-eeeeeeccCCCcceeEeeecCceEEEeecce--------eeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 160 AYYSTSGKLKNKY-YERIATLPTLNDRFTKCFLANNYVQVRRHKK--------CTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
............. ..+.. -...++..+....++.+.+++... ..+..|.+.|++++|+++|.+|++|+.
T Consensus 194 ~~~~~~~~~~Htf~~t~~~--~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 194 HTSSRDITVHHTFNITCVA--LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred eeccchhhhhhcccceeEE--eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc
Confidence 1111111111111 11111 122445555555556666654433 346679999999999999999999999
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc--hh-hhhHhhcccce
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH--SL-VQTLEKHKSAV 307 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~-~~~~~~~~~~i 307 (450)
.+.+.+|.+.+++ +++.+.-.++|..+.++|+++ ..+....|+.|.+....+......-.. .. ...-....+-.
T Consensus 272 E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 272 EGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred ceEEEEEeecCCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 9999999999988 444446788999999998665 666777799999998755431110000 00 00001123446
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC-------CC-----------------------------------
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD-------DD----------------------------------- 345 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~----------------------------------- 345 (450)
+.++++|.-+.++-.+..|.|.+||+.+.+.+..+. ++
T Consensus 349 t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 349 TGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred eeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 778888876777778888999999987654432111 00
Q ss_pred ------------CCceee-eccccCCccceEEEEEe----CCeEEEEeCCCeEEEeeCCCCcc--ccCCCceeEEEecCC
Q 041325 346 ------------SGHMVL-KGALRGHTKAILCLAVV----SNLLFSGSSDNTIRIWRRSSSVT--DHQKGYSCLAVLEGH 406 (450)
Q Consensus 346 ------------~~~~~~-~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~h 406 (450)
.....+ ......|...+.+..+. .+..++++.||.+++|-+..... .....+.|...-..|
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 000000 01223455555544443 23789999999999998854322 224457777766678
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..++++++|+.||. +++.+.|++|.+||-
T Consensus 509 k~~i~a~~fs~dGs--------------lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 509 KTPITALCFSQDGS--------------LLAVSFDDTITIWDY 537 (792)
T ss_pred cCcccchhhcCCCc--------------EEEEecCCEEEEecC
Confidence 99999999999997 777788999999985
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-17 Score=153.86 Aligned_cols=279 Identities=33% Similarity=0.589 Sum_probs=208.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCC-ceeeeecCCCCcceeEEecCC-CceEEEEE-eCCe---EEEE-
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNG-DAVKSLVV-LGDK---LFSA- 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~---l~s~- 143 (450)
+|...+.++.+ ++..++.++.|+.+.+|+..... .... +.++. ..+..+.+ .++. ++..
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS------------LEGLHDSSVSKLALSSPDGNSILLASS 130 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE------------EeccCCCceeeEEEECCCcceEEeccC
Confidence 89999999999 68889999999999999998876 3322 22322 35666666 4333 3443
Q ss_pred eCCCeEEEEEcCC-CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 144 HQDHKIRVWKIDN-NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 144 ~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
..|+.+.+|+... . .....+..|...|..++|+|++
T Consensus 131 ~~d~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~v~~~~~~~~~ 167 (466)
T COG2319 131 SLDGTVKLWDLSTPG-------------------------------------------KLIRTLEGHSESVTSLAFSPDG 167 (466)
T ss_pred CCCccEEEEEecCCC-------------------------------------------eEEEEEecCcccEEEEEECCCC
Confidence 4499999999987 3 1222344688899999999999
Q ss_pred CEEEEEeC-CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh-hH
Q 041325 223 SLLYSTSW-DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ-TL 300 (450)
Q Consensus 223 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~ 300 (450)
..+++++. |+.+++|+...+..+..+. .|...+.+++++|.....+++++.|+.|++||...+. ... .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~--------~~~~~~ 238 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK--------LLRSTL 238 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc--------EEeeec
Confidence 98888885 9999999999888888887 6899999999996444255555999999999876443 333 46
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCC
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSD 378 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d 378 (450)
..|.... ...|+|++.++++++.|+.+++|+....... . .....|...+.++.+.+ ..+++++.|
T Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------~-~~~~~~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 239 SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-----------L-RTLSGHSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE-----------E-EEEecCCccEEEEEECCCCCEEEEeeCC
Confidence 6666664 3389999989999999999999999866531 0 11267788999999986 577779999
Q ss_pred CeEEEeeCCCCccccCCCceeEEEe--cCCCcceEEEEEEecC-CCCCCCCCCCCceEEEEEc-ccCCcEEEEEeC
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVL--EGHRRPVKCLTAVVDS-DYSNRNSDHSSTSFLVYSG-SLDCEIKIWQIR 450 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~-~~~~~~~~~~~~~~~l~s~-~~Dg~i~iw~l~ 450 (450)
+.+++|+.... ...... ..|...+..+.| ... . .++.+ ..|+.+.+|++.
T Consensus 306 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 306 GTVRLWDLETG--------KLLSSLTLKGHEGPVSSLSF-SPDGS-------------LLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred CcEEEEEcCCC--------ceEEEeeecccCCceEEEEE-CCCCC-------------EEEEeecCCCcEEeeecC
Confidence 99999988764 222333 477778999999 433 3 44444 788999999863
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-20 Score=168.26 Aligned_cols=273 Identities=20% Similarity=0.314 Sum_probs=198.9
Q ss_pred eeeeEEeecCCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.++.|. ||..+|.|+.|| |.++++|+.|..|+||..++..+... ..||.+.|+.++.+.+.
T Consensus 181 k~ikrLl--gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs------------~rGhs~ditdlavs~~n~~ 246 (1113)
T KOG0644|consen 181 KNIKRLL--GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS------------CRGHSGDITDLAVSSNNTM 246 (1113)
T ss_pred HHHHHHH--hhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc------------CCCCccccchhccchhhhh
Confidence 3445566 999999999994 99999999999999999998887766 77999999999998666
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.|..|++|.+..+ .+...+.+|++.|++++|+
T Consensus 247 iaaaS~D~vIrvWrl~~~-------------------------------------------~pvsvLrghtgavtaiafs 283 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDG-------------------------------------------APVSVLRGHTGAVTAIAFS 283 (1113)
T ss_pred hhhcccCceEEEEecCCC-------------------------------------------chHHHHhccccceeeeccC
Confidence 889999999999999988 2344556899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEe----ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESV----KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
|-. +.+.||++++||.+ ...+... .......+.++.+.. ...-+++++.|+.-..|.+....
T Consensus 284 P~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~-------- 349 (1113)
T KOG0644|consen 284 PRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA-------- 349 (1113)
T ss_pred ccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhh--------
Confidence 954 67889999999997 2222211 112234555565553 22358999999999988763221
Q ss_pred hhhhHhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---Ce
Q 041325 296 LVQTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NL 371 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~ 371 (450)
.+...+.-+.++.+. .+.+++-.+-.+.+|++.++... ..+.+|...+..+.+++ ..
T Consensus 350 ------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-------------H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 350 ------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-------------HNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred ------hhccceEEEeccccccccceeeeeeeEeeeeecccchhh-------------hhhcccccceeeeeecCCCcHh
Confidence 122222223333222 45666667888999999988644 67888999999998874 47
Q ss_pred EEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
..+++.||...|||+-.+. .......+|. .+..-+|+++|. .++....-|.+.|.
T Consensus 411 ~msag~dgst~iwdi~eg~-------pik~y~~gh~-kl~d~kFSqdgt-------------s~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGI-------PIKHYFIGHG-KLVDGKFSQDGT-------------SIALSDDHGQLYIL 465 (1113)
T ss_pred hhhccCCCceEeeecccCC-------cceeeecccc-eeeccccCCCCc-------------eEecCCCCCceEEe
Confidence 7899999999999998752 1122224554 456678999988 55555555555554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-18 Score=153.95 Aligned_cols=258 Identities=17% Similarity=0.185 Sum_probs=180.5
Q ss_pred CCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC----eEEEEeCC
Q 041325 74 NSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD----KLFSAHQD 146 (450)
Q Consensus 74 h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~~~d 146 (450)
-...|+|+.| +..++|.|..+|.|.+||+..+..... .........|..+|+.+.|..+ .+++++.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC------cccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 5678999999 799999999999999999988764211 1111234578999999999732 29999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
|.|..|+++.-.......... ... +.. .-......+++++|.+ +...+
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~----------~~~--------------------~~~-~~~~~~~~~t~~~F~~~~p~~F 363 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLE----------SKK--------------------HKG-QQSSKAVGATSLKFEPTDPNHF 363 (555)
T ss_pred CcEeeeeccccccchhhcccc----------ccc--------------------ccc-cccccccceeeEeeccCCCceE
Confidence 999999877553210000000 000 000 0001233688999988 67789
Q ss_pred EEEeCCCcEEEEecCCCeE--------EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 226 YSTSWDRTFKIWRTSDFRC--------LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
+.|+.+|.|.--+-...+. ...+. .|.++|.++.++|....++++++ |..+++|.-.. ...++
T Consensus 364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~-------~~~Pl 434 (555)
T KOG1587|consen 364 IVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV-------IASPL 434 (555)
T ss_pred EEEcCCcEEEEEeccCCccccccccccccccc-ccCcceEeeecCCCccceeeeec-cceeEeccccC-------CCCcc
Confidence 9999999998733322221 22233 68899999999998887777777 89999998751 22367
Q ss_pred hhHhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEE
Q 041325 298 QTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFS 374 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 374 (450)
..+..+...+++++|||-. ..|+++..||.|.+||+.....- +......+....+.+.|+ +..|++
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~-----------Pv~s~~~~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE-----------PVLSQKVCSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC-----------CcccccccccccceeecCCCCcEEEE
Confidence 7777778889999999954 57888888999999999854321 222333334455666666 458999
Q ss_pred EeCCCeEEEeeCCC
Q 041325 375 GSSDNTIRIWRRSS 388 (450)
Q Consensus 375 ~~~dg~v~iwd~~~ 388 (450)
|...|.+.+|++..
T Consensus 504 Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 504 GDANGTTHILKLSE 517 (555)
T ss_pred ecCCCcEEEEEcCc
Confidence 99999999999974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-18 Score=130.94 Aligned_cols=247 Identities=21% Similarity=0.225 Sum_probs=170.1
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
.|.+-+++|.. |++|..+|.|.+..+.+.........+ +.+....
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~g---------------------------------k~~iv~e 58 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPG---------------------------------KLKIVPE 58 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCC---------------------------------Ccceeec
Confidence 34444555544 999999999999998765321111111 1122233
Q ss_pred ecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE------EEEee-cc-----cccceEEEEEeecCCcEEEEEcC
Q 041325 207 VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC------LESVK-NA-----HDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~-~~-----~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
.+|.+++..++|. ..+|++|+ ||.|+-|..++... +...+ .. .--.|+++...|..+ -++.++.
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgG 134 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGG 134 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecC
Confidence 5799999999998 44566666 69999998765322 11111 11 123688898988655 5555558
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
|+.++-||+++++ ..+++++|...|.++.--.....+++|++||++++||+++++.+......... ..
T Consensus 135 D~~~y~~dlE~G~--------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~----~~ 202 (325)
T KOG0649|consen 135 DGVIYQVDLEDGR--------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP----NL 202 (325)
T ss_pred CeEEEEEEecCCE--------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh----hh
Confidence 9999999998887 77889999999999988444556899999999999999999987544433222 22
Q ss_pred ccCC-ccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceE
Q 041325 355 LRGH-TKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 355 ~~~~-~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
+..| ...|.+++.+.+.|++|+.- .+.+|.+++. ...++..+. .+|..+.|..+
T Consensus 203 lRp~~g~wigala~~edWlvCGgGp-~lslwhLrss------e~t~vfpip---a~v~~v~F~~d--------------- 257 (325)
T KOG0649|consen 203 LRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSS------ESTCVFPIP---ARVHLVDFVDD--------------- 257 (325)
T ss_pred cCcccCceeEEEeccCceEEecCCC-ceeEEeccCC------CceEEEecc---cceeEeeeecc---------------
Confidence 3333 35689999999999887644 5899999974 123444444 45667777665
Q ss_pred EEEEcccCCcEEEEEe
Q 041325 434 LVYSGSLDCEIKIWQI 449 (450)
Q Consensus 434 ~l~s~~~Dg~i~iw~l 449 (450)
.+++++....|.-|.+
T Consensus 258 ~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 258 CVLIGGEGNHVQSYTL 273 (325)
T ss_pred eEEEeccccceeeeee
Confidence 6778887777777764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-17 Score=132.47 Aligned_cols=215 Identities=11% Similarity=0.074 Sum_probs=166.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
--..+|+|.+| |+..+|.+.....|.|+.....++-.. ...+..|...|++++|++.. |++++.|..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~---------~htls~Hd~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP---------AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee---------ceehhhhCcceeEEeecCCCCceeEccCCCC
Confidence 34579999999 799999999999999999877662222 12367899999999999765 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
-++|....+. ...+...+..++..++++.|+|.++.|++|
T Consensus 79 ayVw~~~~~~----------------------------------------~WkptlvLlRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 79 AYVWTQPSGG----------------------------------------TWKPTLVLLRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred ccccccCCCC----------------------------------------eeccceeEEEeccceeeEeecCcCceEEec
Confidence 9999984431 123444556788899999999999999999
Q ss_pred eCCCcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc----------cccch
Q 041325 229 SWDRTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV----------NKKHS 295 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~ 295 (450)
+....|.+|-++...- -+.++..+...|.++.|+| ++-++++|+.|+..|++..--..... .....
T Consensus 119 Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~ 197 (361)
T KOG1523|consen 119 SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQ 197 (361)
T ss_pred cCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHH
Confidence 9999999998875432 2233446778899999998 55589999999999999643222111 01123
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
++.++....+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 198 lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 198 LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 455555567899999999999999999999999999887553
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-18 Score=148.91 Aligned_cols=205 Identities=17% Similarity=0.200 Sum_probs=144.4
Q ss_pred CCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCC-------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 210 VDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDF-------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 210 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
...|+.+.|+| |...|+.++.||.|++|.+..+ +....+. .|...|+++.|+|-....|++++.|-+|++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeee
Confidence 34799999999 8889999999999999998753 2334444 7999999999999888899999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|+++.+ ....+.+|.+.|..++|+|||+.+++.+.||+|++|+.++++.... ......+..+.
T Consensus 706 Dl~~~~--------~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~---------Eg~gpvgtRgA 768 (1012)
T KOG1445|consen 706 DLANAK--------LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY---------EGKGPVGTRGA 768 (1012)
T ss_pred ehhhhh--------hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc---------cCCCCccCcce
Confidence 998877 7778899999999999999999999999999999999987653210 00011111222
Q ss_pred eEEEEEeCCeEEEEeCC----CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 362 ILCLAVVSNLLFSGSSD----NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
-.-.+.++.++++.+.| +.|.+||.++-. ...+.. ..+...|.-- .....-..+.+++|
T Consensus 769 Ri~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~------~~pl~t--------~~lDvaps~L---vP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 769 RILWACDGRIVIVVGFDKSSERQVQMYDAQTLD------LRPLYT--------QVLDVAPSPL---VPHYDYDSNVLFLT 831 (1012)
T ss_pred eEEEEecCcEEEEecccccchhhhhhhhhhhcc------CCccee--------eeecccCccc---cccccCCCceEEEe
Confidence 22233347777777665 457888876420 111211 1122222110 00011122348899
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
|-.|..|.+|++
T Consensus 832 GKGD~~v~~yEv 843 (1012)
T KOG1445|consen 832 GKGDRFVNMYEV 843 (1012)
T ss_pred cCCCceEEEEEe
Confidence 999999999986
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=136.97 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=191.3
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCcee
Q 041325 31 SNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVN 109 (450)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~ 109 (450)
+++++-|+.... .+.-........+..++.+.+-.+++ .|...|+.+.. -+..|.+-+.|+.+.+|++.....+.
T Consensus 16 ~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 16 SVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred hheehhhccchh---hhcccccceEEEEEeecCccchhhhh-hccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence 344444443332 34445556667777777777777773 46678888888 56899999999999999998766443
Q ss_pred eeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCC-eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeE
Q 041325 110 ITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDH-KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTK 188 (450)
Q Consensus 110 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (450)
+ |.-.++++.|.+-.+...+... ..-.++-+..... ......+..-.
T Consensus 92 i---------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~-----------------h~~D~g~~tqv 139 (323)
T KOG0322|consen 92 I---------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET-----------------HKQDGGDTTQV 139 (323)
T ss_pred E---------------eeeeccccccccceeccCCCcchhheecCCcccchh-----------------hhhccCcccee
Confidence 3 4456667777665555554433 1112211111000 00000000000
Q ss_pred eeecCceEEEeecceeeeecCCCceEEEEEcc-CCC--EEEEEeCCCcEEEEecCCCeEEEEee---------cccccce
Q 041325 189 CFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGS--LLYSTSWDRTFKIWRTSDFRCLESVK---------NAHDDAI 256 (450)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~v 256 (450)
.+... .-....+.+.|..+.. ++. ++++|.++|.+.+||+.++..+..+. ..|..+|
T Consensus 140 --------~i~dd---~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv 208 (323)
T KOG0322|consen 140 --------QIADD---SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV 208 (323)
T ss_pred --------EccCc---hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence 00000 0113445677776543 333 46778899999999999985444332 2688899
Q ss_pred EEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCC
Q 041325 257 NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG 336 (450)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~ 336 (450)
.++.+.+.-+ .=++|+.+..+..|++.... ...+.-....-.+-.+..+..-||++.+++++.|+.|+||..++.
T Consensus 209 lsldyas~~~-rGisgga~dkl~~~Sl~~s~----gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 209 LSLDYASSCD-RGISGGADDKLVMYSLNHST----GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred eeeeechhhc-CCcCCCccccceeeeecccc----CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 9999986433 55778888889999986542 111122222334456888999999999999999999999999998
Q ss_pred ceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeC
Q 041325 337 NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~ 386 (450)
+++ ..++.|...|++++|+++ ++|+++.|++|.+|++
T Consensus 284 ~pL-------------AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPL-------------AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Cch-------------hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 765 788999999999999976 9999999999999986
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-16 Score=126.95 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=166.1
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCC--CeE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD--HKI 149 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d--g~i 149 (450)
....+..+.| |...|..|+.|| -++++.+....... .......|..+-|+...++..+.+ +.+
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~------------~~~~~~~IvEmLFSSSLvaiV~~~qpr~L 70 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS------------KDTEGVSIVEMLFSSSLVAIVSIKQPRKL 70 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc------------ccCCCeEEEEeecccceeEEEecCCCceE
Confidence 3456777778 677888899888 56777655432110 112234677777888875555444 458
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
++.++..... +..+ ....+|.++.++. +.|+++-
T Consensus 71 kv~~~Kk~~~----------------ICe~----------------------------~fpt~IL~VrmNr--~RLvV~L 104 (391)
T KOG2110|consen 71 KVVHFKKKTT----------------ICEI----------------------------FFPTSILAVRMNR--KRLVVCL 104 (391)
T ss_pred EEEEcccCce----------------EEEE----------------------------ecCCceEEEEEcc--ceEEEEE
Confidence 8888887632 1111 1334788888864 4566655
Q ss_pred CCCcEEEEecCCCeEEEEeecc--cccceEEEEEeecCCcEEEE--EcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 230 WDRTFKIWRTSDFRCLESVKNA--HDDAINAIVVSKSNDGFVYT--GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
.+ .|.|||+++.+.++++... +...+.++..+..+ .+++. ....|.|.+||..+-+ .+..+..|++
T Consensus 105 ee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~--------~v~~I~aH~~ 174 (391)
T KOG2110|consen 105 EE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQ--------PVNTINAHKG 174 (391)
T ss_pred cc-cEEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccce--------eeeEEEecCC
Confidence 44 4999999999999998744 44456666665422 24443 3346899999986655 7788889999
Q ss_pred ceEEEEEcCCCCEEEEeeCCCc-EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEE
Q 041325 306 AVTALALSTDGTVLYSGACDRS-ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIR 382 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~ 382 (450)
.+.+++|+++|.+||++++.|+ |||+.+.+|+.+.++..+ .....|.+++|+++ +|++.+..++|.
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG-----------~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG-----------TYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC-----------ceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 9999999999999999999986 799999999877432221 12456889999855 999999999999
Q ss_pred EeeCCCC
Q 041325 383 IWRRSSS 389 (450)
Q Consensus 383 iwd~~~~ 389 (450)
+|.+...
T Consensus 244 iFKL~~~ 250 (391)
T KOG2110|consen 244 IFKLEKV 250 (391)
T ss_pred EEEeccc
Confidence 9998764
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-15 Score=141.37 Aligned_cols=286 Identities=32% Similarity=0.573 Sum_probs=205.2
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeC-CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSS-NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
......+. +|...|.+++| ++.++++++. |+.+++|+......... +.+|...|.+++|+++.
T Consensus 145 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 145 GKLIRTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST------------LAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CeEEEEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe------------eccCCCceEEEEEcCCc
Confidence 46666777 99999999999 6778888885 99999999988555444 55699999999999775
Q ss_pred --EEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 140 --LFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 140 --l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
++. ++.|+.|++||...+.. +.. .+..|.... ..
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~----------------~~~--------------------------~~~~~~~~~-~~ 247 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKL----------------LRS--------------------------TLSGHSDSV-VS 247 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcE----------------Eee--------------------------ecCCCCcce-eE
Confidence 444 48999999998774421 110 122465554 33
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
.|++++..+++++.|+.+++|+...... +..+ ..|...+.++.+.|... .+++++.|+.+.+||......
T Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~------- 318 (466)
T COG2319 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL------- 318 (466)
T ss_pred eECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce-------
Confidence 8999998899999999999999987664 4444 36789999999998444 666688889999998866541
Q ss_pred hhhh--HhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-Ce
Q 041325 296 LVQT--LEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-NL 371 (450)
Q Consensus 296 ~~~~--~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 371 (450)
... ...|...+..+.|.+++..++.+ ..|+.+.+|+....... ....... .+..+.+.. ..
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~ 383 (466)
T COG2319 319 -LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL-------------KTLEGHS-NVLSVSFSPDGR 383 (466)
T ss_pred -EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee-------------EEecCCc-eEEEEEECCCCC
Confidence 111 23566678999994332455555 67899999999876411 1111111 155555544 22
Q ss_pred EE-EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 372 LF-SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 372 l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+. .+..++.+.+|+.... ........+...+....+.+++. .+++++.++.+++|++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 384 VVSSGSTDGTVRLWDLSTG--------SLLRNLDGHTSRVTSLDFSPDGK-------------SLASGSSDNTIRLWDLK 442 (466)
T ss_pred EEEEecCCCceEEEecccC--------eeeeeccCCCCcEEEEEECCCCc-------------EEEEecCCCcEEEEecc
Confidence 33 4788999999999864 33333333327888899999988 89999999999999863
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.8e-18 Score=137.40 Aligned_cols=193 Identities=15% Similarity=0.230 Sum_probs=150.8
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeec-CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
..++++...|.|++||..+++.+..++ .++..++.+.|... ....+.+++.||.|++||+|..... ....+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~------a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES------ARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh------hheecc
Confidence 568888999999999999999999998 88899999999864 3446999999999999999876511 222233
Q ss_pred hcc-cceEEEEEcCCCCEEEEeeC----CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCeEE
Q 041325 302 KHK-SAVTALALSTDGTVLYSGAC----DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLF 373 (450)
Q Consensus 302 ~~~-~~i~~l~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 373 (450)
.+. .+..+++.+-+++.+++|.. +-.|.+||++..+.. +..-...|...|+++.|+ +++|+
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-----------l~~~~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-----------LRQLNESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch-----------hhhhhhhccCcceeEEecCCCCCeEE
Confidence 333 46677777667888888864 667999999976542 334557899999999998 45999
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+||.||.|.+||++... + -..+...-.|...|..+.|..++-. .+.+-+.+++..+|+++
T Consensus 183 SGSvDGLvnlfD~~~d~----E-eDaL~~viN~~sSI~~igw~~~~yk------------rI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKDN----E-EDALLHVINHGSSIHLIGWLSKKYK------------RIMCLTHMETFAIYELE 242 (376)
T ss_pred eecccceEEeeecCCCc----c-hhhHHHhhcccceeeeeeeecCCcc------------eEEEEEccCceeEEEcc
Confidence 99999999999998641 1 1223334457888999999988743 58888899999999974
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.5e-18 Score=144.88 Aligned_cols=266 Identities=17% Similarity=0.159 Sum_probs=178.1
Q ss_pred CCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe----CCeEEEEeCCC
Q 041325 73 GNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL----GDKLFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg 147 (450)
-|..-|.|+.| ...-++..++|..+.+|+-.+..............+ -..|. ....-. .+.++.++.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~p---t~~h~---~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVP---TDMHL---GGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCC---ccccc---cccccCCCCCcceEEEEcCCc
Confidence 46667788888 444455555566666665433322222111111000 00110 001111 23388899999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 227 (450)
.+.+.+-... .......|.+.+.+-.|+|+|.-|++
T Consensus 86 kf~il~k~~r--------------------------------------------VE~sv~AH~~A~~~gRW~~dGtgLlt 121 (737)
T KOG1524|consen 86 RFVILNKSAR--------------------------------------------VERSISAHAAAISSGRWSPDGAGLLT 121 (737)
T ss_pred eEEEecccch--------------------------------------------hhhhhhhhhhhhhhcccCCCCceeee
Confidence 9888764432 11223469999999999999999999
Q ss_pred EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 228 TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
++.||.|++|.-. |-....+- ....+|.|++|.|+.+..+++.+. .+.+=-+.... .+-.++.|.+-|
T Consensus 122 ~GEDG~iKiWSrs-GMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~--------k~i~WkAHDGii 189 (737)
T KOG1524|consen 122 AGEDGVIKIWSRS-GMLRSTVV-QNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANS--------KIIRWRAHDGLV 189 (737)
T ss_pred ecCCceEEEEecc-chHHHHHh-hcCceeEEEEECCCCCceEEecCC--eEEEeeccccc--------ceeEEeccCcEE
Confidence 9999999999854 43333333 467899999999988777776654 44444332222 345567899999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
.++.|++..+++++|++|-..+|||.... .......|..+|++++|+++.++..+.-+++|+=
T Consensus 190 L~~~W~~~s~lI~sgGED~kfKvWD~~G~--------------~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~--- 252 (737)
T KOG1524|consen 190 LSLSWSTQSNIIASGGEDFRFKIWDAQGA--------------NLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFS--- 252 (737)
T ss_pred EEeecCccccceeecCCceeEEeecccCc--------------ccccCChhccceeeeeeccccceeeeeeeeeeec---
Confidence 99999999999999999999999997643 2246678999999999998844433333344411
Q ss_pred CCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
+...+.|..++|++||. .++.|...|.+.+
T Consensus 253 ----------------~p~~GSifnlsWS~DGT-------------Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 253 ----------------SPRVGSIFNLSWSADGT-------------QATCGTSTGQLIV 282 (737)
T ss_pred ----------------CCCccceEEEEEcCCCc-------------eeeccccCceEEE
Confidence 23457899999999999 8999988887653
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=152.33 Aligned_cols=277 Identities=19% Similarity=0.257 Sum_probs=182.6
Q ss_pred ccccCCCCCccceeeeEEeecCC-CcceEEEEE----eCCEEEEeeCCCcEEEecCC-CC--CceeeeecCCCCcceeEE
Q 041325 52 SFRKQAPAASEHQCSATLKVKGN-SSYIPSLAI----AGKLLYGGSSNGEIRAWNRD-PN--NYVNITSTDVGDHANVVA 123 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h-~~~v~~~~~----d~~~l~tgs~dg~v~vw~~~-~~--~~~~~~~~~~~~~~~~~~ 123 (450)
..+...+....++++..|....- ...|+.+.+ |..++++|+.||.||||+-. +. +.........- ... .
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L--s~~-~ 1161 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL--SDQ-L 1161 (1387)
T ss_pred cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc--ccc-C
Confidence 44556677777777777763222 247999999 67899999999999999632 21 11111111100 000 0
Q ss_pred ecCCCceEEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 124 TGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 124 ~~h~~~v~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+..+.=.-+.|. ...|+++|.-..|+|||...+ .....++.
T Consensus 1162 ~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E----------------~~~~diP~-------------------- 1205 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE----------------QVVADIPY-------------------- 1205 (1387)
T ss_pred ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc----------------eeEeeccc--------------------
Confidence 1111111334554 233777777899999999988 34444432
Q ss_pred ceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCe---EEEEeecccccc--eEEEEEeecCCcEEEEEcCC
Q 041325 202 KKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFR---CLESVKNAHDDA--INAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d 275 (450)
+....|+++.-+. .|+.+++|..||.|++||.+... .+...+ .|... |..+.+.+.+-+.+++|+.|
T Consensus 1206 ------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1206 ------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred ------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccC
Confidence 2333566666544 57999999999999999987543 334444 67666 99999997666679999999
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhc---ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKH---KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
|.|++||++.... . .......| .+..+++..+++...+|+|+. +.|+||++...+ +..+....
T Consensus 1279 G~I~~~DlR~~~~---e---~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~------ 1344 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSK---E---TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNP------ 1344 (1387)
T ss_pred CeEEEEecccCcc---c---ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCc------
Confidence 9999999987420 1 11111111 235899999999999999998 999999987433 21111111
Q ss_pred ccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 353 GALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
..+....+.+.|++|++. ++++|+.|.+|.||....
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 112223355699999976 889999999999998764
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-18 Score=145.90 Aligned_cols=257 Identities=15% Similarity=0.211 Sum_probs=195.9
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
.-..+.+ +|++|+.|+..|.|-.+|..++++..... -...|.++.|.-+. +++......+.|||
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-------------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD 197 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-------------VMETVRDVTFLHNEQFFAVAQKKYVYVYD 197 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-------------hhhhhhhhhhhcchHHHHhhhhceEEEec
Confidence 3455666 79999999999999999999998766522 23478888887444 77777889999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
-..-+. .|+. ....|..+.|-|.--+|++++..|.
T Consensus 198 ~~GtEl--------------HClk-------------------------------~~~~v~rLeFLPyHfLL~~~~~~G~ 232 (545)
T KOG1272|consen 198 NNGTEL--------------HCLK-------------------------------RHIRVARLEFLPYHFLLVAASEAGF 232 (545)
T ss_pred CCCcEE--------------eehh-------------------------------hcCchhhhcccchhheeeecccCCc
Confidence 765432 2222 2236888999998889999999999
Q ss_pred EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc
Q 041325 234 FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
++--|+.+|+.+..+. ...+.+..+.-+| .+..+-+|..+|+|.+|.....+ ++..+..|.++|.++++.
T Consensus 233 L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~ske--------PLvKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 233 LKYQDVSTGKLVASIR-TGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKE--------PLVKILCHRGPVSSIAVD 302 (545)
T ss_pred eEEEeechhhhhHHHH-ccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcc--------hHHHHHhcCCCcceEEEC
Confidence 9999999999999988 5678888899998 45589999999999999986665 777888899999999999
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCcccc
Q 041325 314 TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 314 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
++|+|+++.+.|..++|||++.-..+ ..... ..+...++++..-+++++....|.||.=......
T Consensus 303 ~~G~YMaTtG~Dr~~kIWDlR~~~ql-------------~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~- 367 (545)
T KOG1272|consen 303 RGGRYMATTGLDRKVKIWDLRNFYQL-------------HTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSG- 367 (545)
T ss_pred CCCcEEeecccccceeEeeecccccc-------------ceeec-CCCccccccccccceeeecCCeeeeehhhhcCCC-
Confidence 99999999999999999999975533 11111 3455678888776666777778999953321110
Q ss_pred CCCceeEEEecCC--CcceEEEEEEecCC
Q 041325 394 QKGYSCLAVLEGH--RRPVKCLTAVVDSD 420 (450)
Q Consensus 394 ~~~~~~~~~~~~h--~~~v~~l~~~~~~~ 420 (450)
.....+..| .++|..+.|+|-..
T Consensus 368 ----~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 368 ----HGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred ----CCCcchhhhccCcccccceeccHHH
Confidence 111111122 34899999998766
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-19 Score=161.36 Aligned_cols=235 Identities=19% Similarity=0.345 Sum_probs=184.9
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+.+|..+|.|..|...+ +++|+.|..++||..++. .++..++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----------------~~lAs~r-------------------- 229 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----------------RCLASCR-------------------- 229 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch----------------hhhccCC--------------------
Confidence 56899999999998544 999999999999998888 5555544
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
+|.+.|+.++.+.+..++++++.|..|++|.+.++.++..+. +|.+.|++++|+|.. +.+.||++++
T Consensus 230 -------Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~ 296 (1113)
T KOG0644|consen 230 -------GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRI 296 (1113)
T ss_pred -------CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEe
Confidence 799999999999999999999999999999999999999998 999999999999743 7789999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
||.+-.... ....+. .+ ....-+.++.|..++.-+++|+.|+.-..|.+... ..+..
T Consensus 297 wd~r~~~~~--y~prp~-~~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-------------------~~~~~ 353 (1113)
T KOG0644|consen 297 WDARLEPRI--YVPRPL-KF-TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL-------------------AWRSN 353 (1113)
T ss_pred ccccccccc--cCCCCC-Cc-ccccceeeeeccccccccccccCCcccccchhhHh-------------------hhhcc
Confidence 998721100 000011 11 12356778888889999999999999999887632 11222
Q ss_pred ceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 361 AILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 361 ~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
.+.-+... ..+.+++-.+-.+++|++.++ ..+..+.+|...+..+.++|-... ...+
T Consensus 354 ~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g--------~l~H~l~ghsd~~yvLd~Hpfn~r------------i~ms 413 (1113)
T KOG0644|consen 354 LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG--------QLLHNLMGHSDEVYVLDVHPFNPR------------IAMS 413 (1113)
T ss_pred ceEEEeccccccccceeeeeeeEeeeeecccc--------hhhhhhcccccceeeeeecCCCcH------------hhhh
Confidence 22112222 236677778888999999875 667778899999999999998774 7889
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
++.||...|||+
T Consensus 414 ag~dgst~iwdi 425 (1113)
T KOG0644|consen 414 AGYDGSTIIWDI 425 (1113)
T ss_pred ccCCCceEeeec
Confidence 999999999997
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-15 Score=134.64 Aligned_cols=277 Identities=11% Similarity=0.168 Sum_probs=167.3
Q ss_pred EEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE-eCCCeEEEEEcCCCceeEEe
Q 041325 88 LYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA-HQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~-~~dg~i~iw~~~~~~~~~~~ 163 (450)
+++...++.|++|++.+ ++.... . ...+.+....++++|+. |+++ ..++.|.+|+++.....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~-~----------~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--- 70 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLL-Q----------VVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--- 70 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeee-e----------EEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---
Confidence 34446789999999964 332211 1 11233567788898776 5554 45888999999732100
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 242 (450)
...... ...+....++++|+++++++++ .++.|.+|++.+.
T Consensus 71 ----------~~~~~~----------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 71 ----------TFAAES----------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred ----------EEeeee----------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 000000 1122456799999999888876 4889999999742
Q ss_pred -e---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCE
Q 041325 243 -R---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTV 318 (450)
Q Consensus 243 -~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 318 (450)
. .+..+. +......++++|+++.++++...++.|.+||+.+..... .......... .......++|+|+|++
T Consensus 113 g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~-~~~~~~~~~~-~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 113 GIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV-AQEPAEVTTV-EGAGPRHMVFHPNQQY 188 (330)
T ss_pred CCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc-ccCCCceecC-CCCCCceEEECCCCCE
Confidence 2 222222 334567788998666556777778999999997532100 0000000111 1244678999999999
Q ss_pred EEEeeC-CCcEEEEEcCC--CceeeeCCCCCCceeeecccc------CCccceEEEEEeC--CeEEEEe-CCCeEEEeeC
Q 041325 319 LYSGAC-DRSILVWERDQ--GNYIVDGDDDSGHMVLKGALR------GHTKAILCLAVVS--NLLFSGS-SDNTIRIWRR 386 (450)
Q Consensus 319 l~~g~~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~ 386 (450)
++++.. ++.|.+|++.. ++.. ....+. .+......+.+++ ++++++. .++.|.+|++
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIE-----------CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEE-----------EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 988876 89999999974 2211 011111 0112233566664 4777765 4789999998
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
... ....+.+...... .....+.++|+++ +|+++. .+++|.+|++
T Consensus 258 ~~~----~~~~~~~~~~~~~-~~p~~~~~~~dg~-------------~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 258 SED----GSVLSFEGHQPTE-TQPRGFNIDHSGK-------------YLIAAGQKSHHISVYEI 303 (330)
T ss_pred eCC----CCeEEEeEEEecc-ccCCceEECCCCC-------------EEEEEEccCCcEEEEEE
Confidence 653 1112223322221 2455789999998 666655 5899999986
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-15 Score=132.33 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=108.6
Q ss_pred CceEEEEEcc-CCCEEEEEeCCCcEEEEecCC--------------C--------------eEEEEeecccccceEEEEE
Q 041325 211 DTVSALALSS-DGSLLYSTSWDRTFKIWRTSD--------------F--------------RCLESVKNAHDDAINAIVV 261 (450)
Q Consensus 211 ~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~--------------~--------------~~~~~~~~~~~~~v~~~~~ 261 (450)
..|+|+.|-| +...++.+-.+|.+.+||.+- + .++..+. ...+.|+..+|
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~~g~in~f~F 298 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH-IGEGSINEFAF 298 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE-eccccccceeE
Confidence 4688888887 445566667788888886531 1 1122222 23458899999
Q ss_pred eecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 262 SKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 262 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
+| +..+|++.+.||.+||+|..+.+ ++..++..-+...|++|+|||++|++|++|--|.||.+...+.+
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~e--------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV-- 367 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQE--------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV-- 367 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHH--------HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE--
Confidence 99 45599999999999999997776 77777777789999999999999999999999999999988755
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeC
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
..-.+|..+|..++|++
T Consensus 368 -----------ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 -----------ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -----------EeccccccceeeEeecc
Confidence 56789999999999997
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.5e-17 Score=141.16 Aligned_cols=231 Identities=19% Similarity=0.294 Sum_probs=163.7
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-EEEEEcCCCcEEEE
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVW 281 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw 281 (450)
...+.+|.+-|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|.|..++ ++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999986554 68999999999999
Q ss_pred eCcchhhhc--cccchhhhhHhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQV--NKKHSLVQTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+...+... .........+..|...|..++-.|++ +.+.++++||+|+-||++..... ............+...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c---~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC---NPDEDCPSILVNYNPQ 199 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC---CccccccHHHHHhchh
Confidence 997532100 01223556677889999999999988 88999999999999999963211 0000000011111122
Q ss_pred ccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCcccc----------CCCceeEEEe-cCCC-----------cceEEE
Q 041325 359 TKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDH----------QKGYSCLAVL-EGHR-----------RPVKCL 413 (450)
Q Consensus 359 ~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~----------~~~~~~~~~~-~~h~-----------~~v~~l 413 (450)
--...|+..+ +.+|+.|+.|--.++||.+...... .+...++..+ .+|. ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 2344677776 4499999999999999954321110 1111223322 1222 135777
Q ss_pred EEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 414 TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+|+|.. +|++-+.+ .|+++|+
T Consensus 280 tfnpNGtE------------lLvs~~gE-hVYlfdv 302 (758)
T KOG1310|consen 280 TFNPNGTE------------LLVSWGGE-HVYLFDV 302 (758)
T ss_pred EECCCCcE------------EEEeeCCe-EEEEEee
Confidence 88999874 77777665 4888876
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=129.73 Aligned_cols=254 Identities=18% Similarity=0.304 Sum_probs=184.2
Q ss_pred ccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEec-CCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWN-RDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
..+.+++.++ ||.+.|++... -..-+++.+.|.++|||- .+.++.-.. +...-..+++++.+..
T Consensus 12 ~kp~ll~~~e--G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps-----------I~~~mP~~~~~~~y~~ 78 (404)
T KOG1409|consen 12 KKPELLSKIE--GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS-----------IYHYMPSPCSAMEYVS 78 (404)
T ss_pred cchhhhhhhc--CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-----------hhhhCCCCceEeeeec
Confidence 4556778888 99999998877 578899999999999994 444443222 1223346889999987
Q ss_pred Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 138 DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 138 ~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
+. |+.|-..|++.-+.+...-. +......+..|...+..
T Consensus 79 e~~~L~vg~~ngtvtefs~sedfn---------------------------------------km~~~r~~~~h~~~v~~ 119 (404)
T KOG1409|consen 79 ESRRLYVGQDNGTVTEFALSEDFN---------------------------------------KMTFLKDYLAHQARVSA 119 (404)
T ss_pred cceEEEEEEecceEEEEEhhhhhh---------------------------------------hcchhhhhhhhhcceee
Confidence 66 88888899998887754311 00122234468899999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
+.|+...+++++.+.|..+.---.+.+..+..+. ......++.+.- . +...|...|.|.+-.+... ...
T Consensus 120 ~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~--~-~~fvGd~~gqvt~lr~~~~------~~~ 188 (404)
T KOG1409|consen 120 IVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDA--L-YAFVGDHSGQITMLKLEQN------GCQ 188 (404)
T ss_pred EEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceee--E-EEEecccccceEEEEEeec------CCc
Confidence 9999999999999999887655555555444332 112222222221 1 5566666777776665432 334
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLF 373 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 373 (450)
++..+.+|...+++++|.+..+.|++|..|..+.+||+.-.+.+ ...+.+|...|..+.+.. ..++
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~------------~~el~gh~~kV~~l~~~~~t~~l~ 256 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT------------AYELQGHNDKVQALSYAQHTRQLI 256 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce------------eeeeccchhhhhhhhhhhhheeee
Confidence 77788999999999999999999999999999999999865433 357788999998887764 4899
Q ss_pred EEeCCCeEEEeeCCCC
Q 041325 374 SGSSDNTIRIWRRSSS 389 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~ 389 (450)
+++.||.|.+|+.+..
T Consensus 257 S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMNVK 272 (404)
T ss_pred eccCCCeEEEEeccce
Confidence 9999999999998753
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-16 Score=126.84 Aligned_cols=292 Identities=14% Similarity=0.218 Sum_probs=178.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCc-----eeeeecCCCCcceeEEecCCCceEEEEEeCCe----EE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNY-----VNITSTDVGDHANVVATGNGDAVKSLVVLGDK----LF 141 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~ 141 (450)
...+-|.++.| +|.+||||..+|.|.++.-..... ....+...+.-..+....-...|..+.|.++. ++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34567999999 699999999999999997543321 11111111110111111223578999998554 78
Q ss_pred EEeCCCeEEEEEcCCCceeEEe--ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-ecCCCceEEEEE
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYS--TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-VHHVDTVSALAL 218 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 218 (450)
..+.|.+|++|.+......... ...+........+. .-....-...+...+...+ ..|.--|+++.+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr----------~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR----------LPVEGRHDLEVEASPRRVYANAHTYHINSISV 172 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceee----------ceeeccccceeeeeeeeeccccceeEeeeeee
Confidence 8889999999999766432200 00000000000000 0000000111111111122 358889999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeE---EEEeec----ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh--
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRC---LESVKN----AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ-- 289 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-- 289 (450)
+.|+..++++. |=.|.+|+++--.. +..+++ ....-|++..|+|...++++-.+..|+|++-|++...+=
T Consensus 173 NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 99999888875 88999999874322 122221 123568899999998989999999999999999853310
Q ss_pred ------ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCC-ceeeeCCCCCCceeeeccccCC----
Q 041325 290 ------VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG-NYIVDGDDDSGHMVLKGALRGH---- 358 (450)
Q Consensus 290 ------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~---- 358 (450)
.........-+..--+.|..+.|+++|+++++-+. -+|++||+... +++ ....-|
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv-------------~t~~vh~~lr 317 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV-------------ETYPVHEYLR 317 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc-------------eEEeehHhHH
Confidence 01111222233344567899999999999997642 68999999543 222 111111
Q ss_pred --------ccce---EEEEEeCC--eEEEEeCCCeEEEeeCCCC
Q 041325 359 --------TKAI---LCLAVVSN--LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 359 --------~~~v---~~~~~~~~--~l~s~~~dg~v~iwd~~~~ 389 (450)
...| .-++|+|+ +++||+..+..++++...+
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1222 45778877 9999999999999996554
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=134.52 Aligned_cols=199 Identities=20% Similarity=0.227 Sum_probs=148.0
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
..++|++++ +++++.||++|+|++.+.. .......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------------------------------------------t~l~e~~ 184 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------------------------------------------TILEEIA 184 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-------------------------------------------hhhhhHh
Confidence 678888764 9999999999999987762 1222336
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCC--c-E-EEEEcCCCcEEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSND--G-F-VYTGSADTKIKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~--~-~-l~~~~~dg~i~vwd~ 283 (450)
|...|.++.|+|||+.|++.+.| ..+||+.+++..+.... ...+.....+.|..++. . + ++....-+.|+.||+
T Consensus 185 ~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 185 HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEe
Confidence 88899999999999999999999 99999999997777665 23334556667775331 2 2 333344567788776
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
..-... ..-...........|++++.++||++++.|+.||.|.|++..+.+.+. .....|...|+
T Consensus 264 ~~w~~~---~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~------------~vk~aH~~~VT 328 (398)
T KOG0771|consen 264 SLWSGS---NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQ------------YVKEAHLGFVT 328 (398)
T ss_pred eeeccc---cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeE------------eehhhheeeee
Confidence 443310 111222222344679999999999999999999999999999876552 45678999999
Q ss_pred EEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 364 CLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 364 ~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
.+.|.|+ ++++.+.|.+..+..+.-
T Consensus 329 ~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 329 GLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEEEcCCcCcccccccCCceeEEEEee
Confidence 9999976 888899999888887653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=131.10 Aligned_cols=257 Identities=13% Similarity=0.102 Sum_probs=173.3
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+.+|.+.|++|.|+.+. |++|+.|..+++|+++..-..... +.+..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~----------KPI~~---------------------- 99 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP----------KPIGV---------------------- 99 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC----------CCcee----------------------
Confidence 56899999999999655 999999999999999754110000 00000
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.-..|...|.|++|......+++|+.+++|.+.|+++.+.+..+.. ...+.|..+..+|. ++.+++.+.+|.|.
T Consensus 100 ----~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 100 ----MEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVS 174 (609)
T ss_pred ----ccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEE
Confidence 1114668999999999999999999999999999999988887752 12358999999996 66999999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
+||.+.... .. ..............+.|+|. -.+|++.+..+-+-+||.+.....+- +......+...
T Consensus 175 ~~D~Rd~~~----~~-~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~------~~~~~~~L~~~ 243 (609)
T KOG4227|consen 175 FIDNRDRQN----PI-SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY------QRSMFKGLPQE 243 (609)
T ss_pred EEeccCCCC----CC-ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH------hhhccccCccc
Confidence 999976541 11 11122234466788999995 46788888899999999986542110 00000011111
Q ss_pred ccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-------CcceEEEEEEecCCCCCCCCCCC
Q 041325 359 TKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-------RRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
...-.+..|+ |+.+.+--....-.+||+.+. .-.+..+ .| ...+.+++|..+..
T Consensus 244 ~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~-------R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~--------- 306 (609)
T KOG4227|consen 244 NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ-------RCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT--------- 306 (609)
T ss_pred chhhhheeeCCCCCeehhhhccCCCEEeeeecc-------cceeEec-cCCCCcceeeeeeeeeeeeccee---------
Confidence 1112445565 446665555555567777652 0111222 12 23567777776654
Q ss_pred CceEEEEEcccCCcEEEEEe
Q 041325 430 STSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l 449 (450)
++||+++-.|++|.|
T Consensus 307 -----v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 307 -----VATGSDHWGIHIWKL 321 (609)
T ss_pred -----eeccCcccceEEEec
Confidence 999999999999986
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-15 Score=119.83 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=174.4
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
-..+|+|.+|+.|+ ++.+.....|.||.....+. ++ ..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------w~---------------------------~~ 48 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------WE---------------------------PA 48 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-------------ce---------------------------ec
Confidence 34699999999888 88888888999999887631 11 22
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC-CCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS-DFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.++..|...|++++|+|..+.|++++.|..-++|... .++ +...+. .++..++++.|+| ..+.|++|+.-..|.|
T Consensus 49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP-~enkFAVgSgar~isV 126 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL-RINRAATCVKWSP-KENKFAVGSGARLISV 126 (361)
T ss_pred eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE-EeccceeeEeecC-cCceEEeccCccEEEE
Confidence 2344799999999999999999999999999999984 332 333343 5788999999999 5558999999999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC--CCCC----ceeeecc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD--DDSG----HMVLKGA 354 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~----~~~~~~~ 354 (450)
|-++... .-+.....-+.+.+.|+++.|+|++-+|++|+.|+..+|+..--.. +-+-+ .+-+ .-.+..+
T Consensus 127 cy~E~EN----dWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~-Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 127 CYYEQEN----DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG-VDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred EEEeccc----ceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeec-cccCCCCCCCccCCcHHHHHHh
Confidence 9876543 3333444445578899999999999999999999999999753211 00000 0000 0112233
Q ss_pred ccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 355 LRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 355 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.....+.|..+.|+ |+.|+-.+.|+.+.+=|...+. +.+.......-+..++.|-.+..
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~-------~~v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS-------ERVQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc-------hhccchhhccCCceeeEeecCCc
Confidence 44566889999998 7799999999999999877541 12333333336777888876655
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-15 Score=140.57 Aligned_cols=262 Identities=14% Similarity=0.230 Sum_probs=165.8
Q ss_pred EecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
+..|...|..++.+++. +++|+.||+|++|+....... ....
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------~~s~-------------------------- 1088 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------GGSA-------------------------- 1088 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------ccee--------------------------
Confidence 56788899999988444 999999999999998765210 0000
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-------EEEEeecccccceEEE-EEeecCCc-EEE
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-------CLESVKNAHDDAINAI-VVSKSNDG-FVY 270 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~-~~~~~~~~-~l~ 270 (450)
....++......+.++.+.+.++.+|.++.||.|++.+++... +.........+.+.++ ++...... .++
T Consensus 1089 -rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1089 -RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred -eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEE
Confidence 1112222355688999999999999999999999999987621 1122221223334333 33332333 688
Q ss_pred EEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 271 TGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 271 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
.+...+.|..||++... ....+ ....+.|++++.+|.++++++|+..|.+.+||++-+.++...
T Consensus 1168 y~T~~~~iv~~D~r~~~--------~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw------ 1233 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRH--------DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW------ 1233 (1431)
T ss_pred EEEeccceEEecchhhh--------hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc------
Confidence 88899999999998765 22222 224478999999999999999999999999999987665321
Q ss_pred eeeeccccCCccceEEEEEe---C--CeEE-EEe-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE-ec--
Q 041325 349 MVLKGALRGHTKAILCLAVV---S--NLLF-SGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV-VD-- 418 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~---~--~~l~-s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~-- 418 (450)
. ..+..++..+..+ + ...+ +++ ..+.|.+|++.++. +-..+... ..+..+.+. |.
T Consensus 1234 -----~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~--------~~~vl~~s-~~~p~ls~~~Ps~~ 1298 (1431)
T KOG1240|consen 1234 -----E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL--------RQTVLWAS-DGAPILSYALPSND 1298 (1431)
T ss_pred -----c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc--------ceEEEEcC-CCCcchhhhccccc
Confidence 1 2233566655554 3 2444 444 57889999999862 22222111 011111110 10
Q ss_pred ----CCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 419 ----SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 419 ----~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.......+.....+.++.+|+.|+.|+.||.
T Consensus 1299 ~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1299 ARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 0011112222223338999999999999985
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=130.26 Aligned_cols=196 Identities=22% Similarity=0.229 Sum_probs=144.7
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.+++|+.+|..+++|+.||++|+|+..+...+.... .|...|.++.|+|++. +|++-+.| ..+||+.+++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~------ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGA------ 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCc------
Confidence 789999999999999999999999988777776666 7899999999998544 89999998 89999998874
Q ss_pred chhhhhH--hhcccceEEEEEcCCC-----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 294 HSLVQTL--EKHKSAVTALALSTDG-----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 294 ~~~~~~~--~~~~~~i~~l~~~~~~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
.+... ...+.....+.|+.|+ .+++....-+.|+.||+...+. . ..............|++++
T Consensus 219 --~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-------~-~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 219 --ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-------S-NFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred --hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-------c-cccchhhhhhccCcceeEE
Confidence 22222 2234456677888766 2333334456788877653321 0 1111222333345678888
Q ss_pred Ee--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEE-EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 367 VV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA-VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 367 ~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
.+ |++++.|+.||.|-|++..+- ++++ .-+.|..-|+.+.|+|+.+ ++++.+.|..
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~Pdsr-------------~~~svSs~~~ 347 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFSPDSR-------------YLASVSSDNE 347 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEcCCcC-------------cccccccCCc
Confidence 87 679999999999999998862 3333 3467999999999999999 7888888888
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
+.|-.|
T Consensus 348 ~~v~~l 353 (398)
T KOG0771|consen 348 AAVTKL 353 (398)
T ss_pred eeEEEE
Confidence 777654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-15 Score=123.94 Aligned_cols=251 Identities=14% Similarity=0.182 Sum_probs=182.8
Q ss_pred CCCcceEEEEE--e--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCe
Q 041325 73 GNSSYIPSLAI--A--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~ 148 (450)
.....|+.++| | .+.|...+.|..+.........+..... ..-......++|..++.....|++|-.+|.
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~------~~~~~~l~~~~I~gl~~~dg~Litc~~sG~ 126 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD------DAKTVSLGTKSIKGLKLADGTLITCVSSGN 126 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc------cccccccccccccchhhcCCEEEEEecCCc
Confidence 45567888888 3 3455555577777777776665443310 011234566789999999888999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYS 227 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 227 (450)
+.+|..+.+... . .+...+. ....+..+.-++ +...+++
T Consensus 127 l~~~~~k~~d~h---------s------------------------------s~l~~la-~g~g~~~~r~~~~~p~Iva~ 166 (412)
T KOG3881|consen 127 LQVRHDKSGDLH---------S------------------------------SKLIKLA-TGPGLYDVRQTDTDPYIVAT 166 (412)
T ss_pred EEEEeccCCccc---------c------------------------------ccceeee-cCCceeeeccCCCCCceEec
Confidence 999999866310 0 0000111 112455555555 3445666
Q ss_pred EeCC--CcEEEEecCCCeEEEEeecc--------cccceEEEEEeecC-CcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 228 TSWD--RTFKIWRTSDFRCLESVKNA--------HDDAINAIVVSKSN-DGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 228 ~~~d--g~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
|+.. ..+.+||+++.+.+..-+.. -.-.++++.|.+.. ...|++++.-+.+++||.+.+. .+
T Consensus 167 GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-------RP 239 (412)
T KOG3881|consen 167 GGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-------RP 239 (412)
T ss_pred CchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-------cc
Confidence 9988 88999999988666544321 12346778888732 4469999999999999997544 36
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFS 374 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s 374 (450)
+..+.....+++++...|++++|++|..-|.+..||++.++.+ ...+.+-.+.|.++..++. ++++
T Consensus 240 V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~------------g~~~kg~tGsirsih~hp~~~~las 307 (412)
T KOG3881|consen 240 VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL------------GCGLKGITGSIRSIHCHPTHPVLAS 307 (412)
T ss_pred eeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee------------ccccCCccCCcceEEEcCCCceEEe
Confidence 6677777899999999999999999999999999999988754 2457888899999999976 9999
Q ss_pred EeCCCeEEEeeCCC
Q 041325 375 GSSDNTIRIWRRSS 388 (450)
Q Consensus 375 ~~~dg~v~iwd~~~ 388 (450)
++-|+.|||+|+++
T Consensus 308 ~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 308 CGLDRYVRIHDIKT 321 (412)
T ss_pred eccceeEEEeeccc
Confidence 99999999999997
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-15 Score=138.15 Aligned_cols=235 Identities=16% Similarity=0.098 Sum_probs=154.0
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC---CeEEEEEcCCCceeEEeccCcc
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD---HKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~ 168 (450)
+..|++||.+...... +..|...+.+.+|+|++ |+.++.+ ..|++||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~~~-------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------- 241 (429)
T PRK01742 183 PYEVRVADYDGFNQFI-------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------- 241 (429)
T ss_pred eEEEEEECCCCCCceE-------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--------
Confidence 4689999987665321 45677789999999887 6665543 46999999876321
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEE--ecCCCeEE
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIW--RTSDFRCL 245 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~ 245 (450)
.+.. ..+.....+|+|||+.|+.+. .+|.+.|| |+.+++.
T Consensus 242 ------~l~~------------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~- 284 (429)
T PRK01742 242 ------VVAS------------------------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP- 284 (429)
T ss_pred ------EEec------------------------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-
Confidence 1111 111233579999999888764 67876655 6665554
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
..+. .+...+....|+|++..+++++..+|...+|++.... .. ...+ .+.. ....|+|||++|+..+.+
T Consensus 285 ~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~----~~---~~~l-~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 285 SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG----GG---ASLV-GGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC----CC---eEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence 3444 4566788899999766566666678889999875432 10 1111 2222 457899999999888776
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
+ +.+||+.+++... . ...+. .....|+ +++|+.++.++.+.+|++... .......+
T Consensus 354 ~-i~~~Dl~~g~~~~----------l---t~~~~--~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~------~G~~~~~l 411 (429)
T PRK01742 354 N-VVKQDLTSGSTEV----------L---SSTFL--DESPSISPNGIMIIYSSTQGLGKVLQLVSA------DGRFKARL 411 (429)
T ss_pred C-EEEEECCCCCeEE----------e---cCCCC--CCCceECCCCCEEEEEEcCCCceEEEEEEC------CCCceEEc
Confidence 5 6669998875331 0 01111 1234455 558999988998888876421 12566777
Q ss_pred cCCCcceEEEEEEecC
Q 041325 404 EGHRRPVKCLTAVVDS 419 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~ 419 (450)
..|.+.+...+|+|-.
T Consensus 412 ~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 412 PGSDGQVKFPAWSPYL 427 (429)
T ss_pred cCCCCCCCCcccCCCC
Confidence 7888889999998853
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.6e-14 Score=115.04 Aligned_cols=259 Identities=14% Similarity=0.169 Sum_probs=160.7
Q ss_pred cceEEEEEeC--CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEE
Q 041325 76 SYIPSLAIAG--KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIR 150 (450)
Q Consensus 76 ~~v~~~~~d~--~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~ 150 (450)
..+.-++|+. .-+|++..|-.|++||-........ -..-...|++++|-|.. |+.|+..| |.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~L------------ks~sQrnvtclawRPlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKL------------KSVSQRNVTCLAWRPLSASELAVGCRAG-IC 165 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCcee------------cchhhcceeEEEeccCCcceeeeeecce-eE
Confidence 3466677744 3467888999999999777443332 11234589999998766 77777754 99
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS- 229 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 229 (450)
+|......... ..+...... ........+| .+|++|.|++||..+++++
T Consensus 166 iW~~s~tln~~------------r~~~~~s~~-----------------~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 166 IWSDSRTLNAN------------RNIRMMSTH-----------------HLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred EEEcCcccccc------------ccccccccc-----------------chhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 99887542100 000000000 0011112234 6899999999999999987
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.|..|.|||..++..+.... ...+.+.-+.|+|+++ +++++.-|+..++|+..... ...+.. -..+.|..
T Consensus 216 gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~w-------t~erw~-lgsgrvqt 285 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSW-------TKERWI-LGSGRVQT 285 (445)
T ss_pred CcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCC-EEEEecccceeeeehhcccc-------eeccee-ccCCceee
Confidence 56789999999988776664 4567889999999666 88888999999999653322 122222 23458999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCc--eeeeCCCCCCceeeecccc------C---CccceEEEEEe--CCeEEEEe
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGN--YIVDGDDDSGHMVLKGALR------G---HTKAILCLAVV--SNLLFSGS 376 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~------~---~~~~v~~~~~~--~~~l~s~~ 376 (450)
.+|+|+|++|+..+. |.-++|.+.... .............+...+. + -.+.+.+++|+ |++|++.-
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999998766553 344455543211 1111111111111111111 1 13567889998 56888876
Q ss_pred CCCe--------EEEeeCCC
Q 041325 377 SDNT--------IRIWRRSS 388 (450)
Q Consensus 377 ~dg~--------v~iwd~~~ 388 (450)
..+. |.+||.+.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred cCCchhhhhhhhhhhhcccc
Confidence 6543 56677664
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-14 Score=124.18 Aligned_cols=279 Identities=14% Similarity=0.189 Sum_probs=186.4
Q ss_pred cCCCcceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 72 KGNSSYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 72 ~~h~~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
.+|....+.|.. ||+|+ |||...-.|++||+....+..... -....|.-.-.+.|. ++--..|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh------------lDae~V~feiLsDD~SK~v~L~~D 115 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH------------LDAEVVDFEILSDDYSKSVFLQND 115 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec------------ccccceeEEEeccchhhheEeecC
Confidence 368888888888 88875 567788999999998765433311 111233333334444 4444556
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
.+|-+-.--.. ..-.. -...-.+++++.-..-|+
T Consensus 116 R~IefHak~G~----------------hy~~R------------------------------IP~~GRDm~y~~~scDly 149 (703)
T KOG2321|consen 116 RTIEFHAKYGR----------------HYRTR------------------------------IPKFGRDMKYHKPSCDLY 149 (703)
T ss_pred ceeeehhhcCe----------------eeeee------------------------------cCcCCccccccCCCccEE
Confidence 66554332211 00000 111234566665333355
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc--
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK-- 304 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-- 304 (450)
.++....|.=++++.|+.+..+. ...+.++++..++ ..++|++|+.+|.|-.||.+...... ..........|.
T Consensus 150 ~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~--~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 150 LVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVG--TLDAASSVNSHPGG 225 (703)
T ss_pred EeecCcceEEEEccccccccccc-cccccceeeeecC-ccceEEecccCceEEEecchhhhhhe--eeecccccCCCccc
Confidence 55556788889999999999887 5568999999998 45599999999999999998765210 111111112222
Q ss_pred ---cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC----CeEEEEeC
Q 041325 305 ---SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS----NLLFSGSS 377 (450)
Q Consensus 305 ---~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~s~~~ 377 (450)
..|+++.|+.+|-.+++|+.+|.+.|||+++.+++. ..-.+...+|..+.|.. +.+++. .
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~------------~kdh~~e~pi~~l~~~~~~~q~~v~S~-D 292 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL------------VKDHGYELPIKKLDWQDTDQQNKVVSM-D 292 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee------------ecccCCccceeeecccccCCCceEEec-c
Confidence 349999999889999999999999999999887663 22334456788888853 244443 4
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
...++|||-.++ +....+. ....++.+++.|+.. ++++|-.++.+..|
T Consensus 293 k~~~kiWd~~~G--------k~~asiE-pt~~lND~C~~p~sG-------------m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 293 KRILKIWDECTG--------KPMASIE-PTSDLNDFCFVPGSG-------------MFFTANESSKMHTY 340 (703)
T ss_pred hHHhhhcccccC--------Cceeecc-ccCCcCceeeecCCc-------------eEEEecCCCcceeE
Confidence 567999998885 4444444 455699999999998 89999888776654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-13 Score=113.30 Aligned_cols=188 Identities=16% Similarity=0.217 Sum_probs=140.9
Q ss_pred eEEEEEccCCCEEEEEeCC--CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 213 VSALALSSDGSLLYSTSWD--RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
|..+-|+ ..++|..+.+ ..+++++++....+..+. ....|.++.++ .+ .|+++-.+. |+|||+++.+
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmN--r~-RLvV~Lee~-IyIydI~~Mk--- 117 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMN--RK-RLVVCLEES-IYIYDIKDMK--- 117 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEc--cc-eEEEEEccc-EEEEecccce---
Confidence 4444455 3455555543 459999999888888876 67899999997 34 555555544 9999997766
Q ss_pred cccchhhhhHhh---cccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 291 NKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 291 ~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
++.++.. +...+..+++++.+.+++--+ ..|.|.+||+.+-+.+ ..+..|.+++.++
T Consensus 118 -----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v-------------~~I~aH~~~lAal 179 (391)
T KOG2110|consen 118 -----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV-------------NTINAHKGPLAAL 179 (391)
T ss_pred -----eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee-------------eEEEecCCceeEE
Confidence 6666554 334466666666666887643 3689999999986644 6778999999999
Q ss_pred EEe--CCeEEEEeCCCe-EEEeeCCCCccccCCCceeEEEecCC--CcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 366 AVV--SNLLFSGSSDNT-IRIWRRSSSVTDHQKGYSCLAVLEGH--RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 366 ~~~--~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
+|+ |.+|||+|..|+ |||+.+.++ +.+..+.-- -..|.+++|+++.+ +|++.|+
T Consensus 180 afs~~G~llATASeKGTVIRVf~v~~G--------~kl~eFRRG~~~~~IySL~Fs~ds~-------------~L~~sS~ 238 (391)
T KOG2110|consen 180 AFSPDGTLLATASEKGTVIRVFSVPEG--------QKLYEFRRGTYPVSIYSLSFSPDSQ-------------FLAASSN 238 (391)
T ss_pred EECCCCCEEEEeccCceEEEEEEcCCc--------cEeeeeeCCceeeEEEEEEECCCCC-------------eEEEecC
Confidence 998 559999999998 799999876 445555322 34688999999999 9999999
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
.++|++++|+
T Consensus 239 TeTVHiFKL~ 248 (391)
T KOG2110|consen 239 TETVHIFKLE 248 (391)
T ss_pred CCeEEEEEec
Confidence 9999999874
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-13 Score=126.88 Aligned_cols=330 Identities=16% Similarity=0.222 Sum_probs=206.3
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-----EEEEe
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-----LFSAH 144 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----l~s~~ 144 (450)
|-...+...+. |+++++.... ..|.|+...+++++.. +.+|..++..+.+.+.. +++++
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~------------l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITS------------LEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred ccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhh------------cccccCccceeeecCCCccceEEEEEe
Confidence 44445555544 6777776654 7899999999998876 77999999999997433 78999
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeecc--------CCCcceeEeeecCceEEEeecceeeee--------c
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLP--------TLNDRFTKCFLANNYVQVRRHKKCTWV--------H 208 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 208 (450)
.||.|++||...+....................... .........+..+...+..+....+.. +
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 999999999998866544433322111111000000 000011111111111111111111111 2
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
|.. -.++.+++.|.+.+..- +..+.+|+..+... .......|...+++.+++|. ..++++|..||.|.+|.--.
T Consensus 160 ~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 160 HQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred hcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccc-cceEEEeccCCcEEEEeccc
Confidence 222 35677888887666554 56788898887441 11122356667899999994 45999999999999996432
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.+ ........+.=|...|.+++|+++|.+|++|+..|.+.+|.+.+++. +-+..-.++|..+
T Consensus 237 ~~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--------------qfLPRLgs~I~~i 298 (792)
T KOG1963|consen 237 SS----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--------------QFLPRLGSPILHI 298 (792)
T ss_pred cc----cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--------------ccccccCCeeEEE
Confidence 11 11123344555788999999999999999999999999999998752 2344456789999
Q ss_pred EEeCC--eEEEEeCCCeEEEeeCCCCcccc-CCCceeE--EEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 366 AVVSN--LLFSGSSDNTIRIWRRSSSVTDH-QKGYSCL--AVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 366 ~~~~~--~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
.++++ +.+....|+.|.+-...+-.... -.+.... ..-....+-.+.+++.|.-. .++-.+.
T Consensus 299 ~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-------------~~vln~~ 365 (792)
T KOG1963|consen 299 VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-------------SLVLNGH 365 (792)
T ss_pred EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-------------ceeecCC
Confidence 99854 78888889999988764321100 0000000 00111234466777777544 5777778
Q ss_pred CCcEEEEEe
Q 041325 441 DCEIKIWQI 449 (450)
Q Consensus 441 Dg~i~iw~l 449 (450)
-|.|.+||+
T Consensus 366 ~g~vQ~ydl 374 (792)
T KOG1963|consen 366 PGHVQFYDL 374 (792)
T ss_pred CceEEEEec
Confidence 888888875
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.8e-15 Score=129.04 Aligned_cols=204 Identities=15% Similarity=0.199 Sum_probs=151.0
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
...|+.++.||.+.|-+-.. +.... ...|.+.|.+-.|++++ |+++++||.|++|.-...-
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-rVE~s------------v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML---- 137 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-RVERS------------ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML---- 137 (737)
T ss_pred cceEEEEcCCceEEEecccc-hhhhh------------hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH----
Confidence 45677788899998887432 22222 56899999999999888 9999999999999865441
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 242 (450)
...+.....+|.|++|.|+.+-++-+. .+.+.|=-+...
T Consensus 138 ----------------------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n 176 (737)
T KOG1524|consen 138 ----------------------------------------RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAAN 176 (737)
T ss_pred ----------------------------------------HHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccc
Confidence 011112455899999999876655443 456777677666
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
..+...+ .|.+-|.++.|++.. +++++|+.|-..++||... ..+..-..|+.+|++++|+|+ +.++.+
T Consensus 177 ~k~i~Wk-AHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G---------~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 177 SKIIRWR-AHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG---------ANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred cceeEEe-ccCcEEEEeecCccc-cceeecCCceeEEeecccC---------cccccCChhccceeeeeeccc-cceeee
Confidence 6677777 899999999999954 4999999999999999532 256666779999999999999 666666
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEE
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRI 383 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~i 383 (450)
+. .++++ -....+.|..++|+.+ .++.|...|.+.+
T Consensus 245 S~-nt~R~------------------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SY-NTARF------------------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-eeeee------------------------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 53 23331 1223567889999844 8888888887654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-14 Score=136.13 Aligned_cols=197 Identities=19% Similarity=0.305 Sum_probs=155.3
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEE---EeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIV---VSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+.+....+..+...++.++.++.+.+||...+.....+.........+.. .++ ..-++++|+.-+.|.+|+....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEecccc
Confidence 344555555667778889999999999999988877777622222222222 222 2336899999999999998632
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
. ....+.+|++.|.++.++.||+++++.++|..+++|++.+.+.. ....-+|+..|..+.
T Consensus 166 n--------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~------------~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 166 N--------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL------------GCTGFGHSARVWACC 225 (967)
T ss_pred C--------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc------------CcccccccceeEEEE
Confidence 2 11257899999999999999999999999999999999987644 135678999999999
Q ss_pred EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC-cceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 367 VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR-RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 367 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
+.++.+++++.|-+.++|+.+. ..+..+.+|. ..|..++..++.. .++|++.||.++
T Consensus 226 ~~~n~i~t~gedctcrvW~~~~---------~~l~~y~~h~g~~iw~~~~~~~~~-------------~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 226 FLPNRIITVGEDCTCRVWGVNG---------TQLEVYDEHSGKGIWKIAVPIGVI-------------IKVTGGNDSTLK 283 (967)
T ss_pred eccceeEEeccceEEEEEeccc---------ceehhhhhhhhcceeEEEEcCCce-------------EEEeeccCcchh
Confidence 9999999999999999997763 4455777775 4689999988888 999999999999
Q ss_pred EEEe
Q 041325 446 IWQI 449 (450)
Q Consensus 446 iw~l 449 (450)
+|++
T Consensus 284 ~~~l 287 (967)
T KOG0974|consen 284 LWDL 287 (967)
T ss_pred hhhh
Confidence 9986
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=127.06 Aligned_cols=177 Identities=26% Similarity=0.396 Sum_probs=141.2
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc-ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN-KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILV 330 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~v 330 (450)
...++.++.|.+...+.+++|+.|..|++|.+....-... ........+..|...|+.+.|+|+|++|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 4578999999986666899999999999999877652211 233456677889999999999999999999999999999
Q ss_pred EEcCCCceee---eCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 331 WERDQGNYIV---DGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 331 wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
|-...-.... ........+.....+.+|...|..++|.++ ++++++.|+.+++||+..+ .....+.+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G--------~l~~~~~d 163 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG--------QLLAILDD 163 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc--------eeEeeccc
Confidence 9877422110 111123345566788899999999999855 9999999999999999986 78888999
Q ss_pred CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 406 HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 406 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|...|..++|.|-.+ ++++-+.|...+.+.+
T Consensus 164 h~~yvqgvawDpl~q-------------yv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQ-------------YVASKSSDRHPEGFSA 194 (434)
T ss_pred cccccceeecchhhh-------------hhhhhccCcccceeee
Confidence 999999999999999 7888888875555443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-16 Score=133.00 Aligned_cols=191 Identities=15% Similarity=0.240 Sum_probs=156.7
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.-..+.++.+|.+|+.|+..|.|..+|..+++....+. -...|.++.|.. +..++ +......+++||-...
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LH-neq~~-AVAQK~y~yvYD~~Gt----- 201 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLH-NEQFF-AVAQKKYVYVYDNNGT----- 201 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhc-chHHH-HhhhhceEEEecCCCc-----
Confidence 34678899999999999999999999999999988886 677899999985 33344 4456688999995332
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-- 369 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 369 (450)
.+..+..+ ..|..+.|-|.--+|++++..|.++.-|+.+|+.+ ..+....+.+..+.-+|
T Consensus 202 ----ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV-------------a~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 202 ----ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV-------------ASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred ----EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhh-------------HHHHccCCccchhhcCCcc
Confidence 35555533 67889999999889999999999999999999866 44444455566666554
Q ss_pred CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
-.+-+|...|+|.+|...+. +++..+..|.++|.+|++.++|. |++|+|.|..++||||
T Consensus 264 aVih~GhsnGtVSlWSP~sk--------ePLvKiLcH~g~V~siAv~~~G~-------------YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSK--------EPLVKILCHRGPVSSIAVDRGGR-------------YMATTGLDRKVKIWDL 322 (545)
T ss_pred ceEEEcCCCceEEecCCCCc--------chHHHHHhcCCCcceEEECCCCc-------------EEeecccccceeEeee
Confidence 37889999999999998874 67777888999999999999999 9999999999999999
Q ss_pred C
Q 041325 450 R 450 (450)
Q Consensus 450 ~ 450 (450)
|
T Consensus 323 R 323 (545)
T KOG1272|consen 323 R 323 (545)
T ss_pred c
Confidence 7
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.9e-12 Score=105.38 Aligned_cols=235 Identities=14% Similarity=0.264 Sum_probs=154.1
Q ss_pred eEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeE-EEEeCC------Ce
Q 041325 78 IPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKL-FSAHQD------HK 148 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~~~d------g~ 148 (450)
...++| |..-++.|.++| .+||+.+.-+...... +..-+-.+..+-|--+.| +.||.+ ..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~----------~~~~G~~~veMLfR~N~laLVGGg~~pky~pNk 76 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ----------FIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNK 76 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc----------cccCchhhhhHhhhhceEEEecCCCCCCCCCce
Confidence 444888 566677776655 8999987633211111 111113444444555553 334333 46
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|.|||=... .++..+ ....+|.++.+.++ .+++.
T Consensus 77 viIWDD~k~----------------~~i~el----------------------------~f~~~I~~V~l~r~--riVvv 110 (346)
T KOG2111|consen 77 VIIWDDLKE----------------RCIIEL----------------------------SFNSEIKAVKLRRD--RIVVV 110 (346)
T ss_pred EEEEecccC----------------cEEEEE----------------------------EeccceeeEEEcCC--eEEEE
Confidence 999993333 222222 24558999998865 45555
Q ss_pred eCCCcEEEEecC-CCeEEEEeeccc-ccceEEEEEeecCCc-EE-EEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 229 SWDRTFKIWRTS-DFRCLESVKNAH-DDAINAIVVSKSNDG-FV-YTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 229 ~~dg~i~iwd~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
- .+.|.+|... +.+.++.+.... .....+++-. .+. +| +-|..-|.|.+-|+...+.. ....+.+|.
T Consensus 111 l-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~--~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~ 181 (346)
T KOG2111|consen 111 L-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT--SNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHD 181 (346)
T ss_pred e-cCeEEEEEcCCChhheeeeecccCCCceEeecCC--CCceEEEcCCCccceEEEEEhhhcCcC------CceEEEccc
Confidence 4 6899999988 556666665222 3333333332 333 33 33566799999998765511 235667899
Q ss_pred cceEEEEEcCCCCEEEEeeCCCc-EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeE
Q 041325 305 SAVTALALSTDGTVLYSGACDRS-ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTI 381 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v 381 (450)
+.|.|++.+-+|.++|+++..|+ |||||..+|+.+.++ .-......|.+++|+++ +|+++|..|+|
T Consensus 182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~-----------RRG~d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL-----------RRGVDRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee-----------ecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence 99999999999999999999997 899999999877432 22234567999999976 99999999999
Q ss_pred EEeeCCCC
Q 041325 382 RIWRRSSS 389 (450)
Q Consensus 382 ~iwd~~~~ 389 (450)
.||.++..
T Consensus 251 HiF~l~~~ 258 (346)
T KOG2111|consen 251 HIFSLRDT 258 (346)
T ss_pred EEEEeecC
Confidence 99998763
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-14 Score=117.56 Aligned_cols=214 Identities=12% Similarity=0.219 Sum_probs=154.8
Q ss_pred CCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC---CeEEEEeCC--C
Q 041325 73 GNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG---DKLFSAHQD--H 147 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~d--g 147 (450)
..++.|..++.-...|++|-.+|.+.+|....+..... +.. .......+..+.-.+ ..+++||.. .
T Consensus 103 l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss--------~l~-~la~g~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 103 LGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSS--------KLI-KLATGPGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred cccccccchhhcCCEEEEEecCCcEEEEeccCCccccc--------cce-eeecCCceeeeccCCCCCceEecCchhccc
Confidence 66778888888667788888899999999885542110 000 112223444554443 337779998 8
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSLL 225 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l 225 (450)
.+.+||++..+..+...... ++.+.. .-.-.++++.|-+. ...|
T Consensus 174 ~lkiwdle~~~qiw~aKNvp---------------nD~L~L-------------------rVPvW~tdi~Fl~g~~~~~f 219 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVP---------------NDRLGL-------------------RVPVWITDIRFLEGSPNYKF 219 (412)
T ss_pred ceeeeecccceeeeeccCCC---------------Cccccc-------------------eeeeeeccceecCCCCCceE
Confidence 89999999883322111100 000000 01115677888876 7889
Q ss_pred EEEeCCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh-Hhhc
Q 041325 226 YSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT-LEKH 303 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~ 303 (450)
++++.-+.+++||.+.+ +++..+. ....++.++...|. .+++++|...|.+..+|++.++ .... +.+.
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~k--------l~g~~~kg~ 289 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGK--------LLGCGLKGI 289 (412)
T ss_pred EEEecceeEEEecCcccCcceeEec-cccCcceeeeecCC-CcEEEEecccchhheecccCce--------eeccccCCc
Confidence 99999999999999865 4666666 56789999999984 5589999999999999998877 4444 7888
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.+.|+++..+|..+++++++-|..|+|+|+.+.+.+
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 899999999999999999999999999999986544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-13 Score=109.74 Aligned_cols=174 Identities=19% Similarity=0.316 Sum_probs=126.6
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc--ccceEE
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH--KSAVTA 309 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~i~~ 309 (450)
+.|.|||-...+++.++. ...+|.++.+. .+ .+++.- .+.|.+|...+.- +.+..+... .....+
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~--r~-riVvvl-~~~I~VytF~~n~-------k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLR--RD-RIVVVL-ENKIYVYTFPDNP-------KLLHVIETRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEc--CC-eEEEEe-cCeEEEEEcCCCh-------hheeeeecccCCCceEe
Confidence 579999977788888886 78899999998 34 444443 5689999986322 133333322 223444
Q ss_pred EEEcCCCCEEEE-eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCe-EEEee
Q 041325 310 LALSTDGTVLYS-GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNT-IRIWR 385 (450)
Q Consensus 310 l~~~~~~~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~-v~iwd 385 (450)
++-+.+..+|+. |-.-|.|+|-|+...+.- ....+.+|...|.|++.+ |.++||+|..|+ |||||
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-----------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-----------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD 210 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcC-----------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence 433334445555 445799999999865421 235678999999999998 669999999998 89999
Q ss_pred CCCCccccCCCceeEEEec--CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 386 RSSSVTDHQKGYSCLAVLE--GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..++ ..+..+. .....|.+++|+|+.. +|+.+|+-|+|+|+.++
T Consensus 211 t~~g--------~~l~E~RRG~d~A~iy~iaFSp~~s-------------~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 211 TEDG--------TLLQELRRGVDRADIYCIAFSPNSS-------------WLAVSSDKGTLHIFSLR 256 (346)
T ss_pred cCCC--------cEeeeeecCCchheEEEEEeCCCcc-------------EEEEEcCCCeEEEEEee
Confidence 9986 4444443 2345799999999999 99999999999999875
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=125.79 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=117.2
Q ss_pred CceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 128 DAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 128 ~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
..|+++.|.+.. ++.+-.+|.+.+||.+...... ..........+.+.+.... ....+.+..
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t------------~p~~~~~k~~~~f~i~t~k---sk~~rNPv~ 284 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT------------APSYQALKDGDQFAILTSK---SKKTRNPVA 284 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCC------------CCcccccCCCCeeEEeeee---ccccCCccc
Confidence 689999998544 7788889999999874331100 0000000011111111000 011124445
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
.+.--.+.|+.++|+|||++||+.+.||.+||+|..+.+.+...+ .--+...|++|+|+++ +|++|+.|..|.||.+.
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFE 362 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCcc-EEEecCCcceEEEEEec
Confidence 555566789999999999999999999999999999888777666 5567899999999555 99999999999999997
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
.++ .+..-++|+++|..++|.|
T Consensus 363 erR--------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERR--------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cce--------EEEeccccccceeeEeecc
Confidence 666 7778889999999999987
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-12 Score=117.14 Aligned_cols=208 Identities=11% Similarity=0.145 Sum_probs=127.4
Q ss_pred CceEEEEEccCCCEEEEEe-CCCcEEEEecCC-CeE--EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 211 DTVSALALSSDGSLLYSTS-WDRTFKIWRTSD-FRC--LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+....++++|++++|++++ .++.|.+|++.. ++. +.... .......++++|+++.++++...++.|.+|++.+.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 4567789999999887765 588999999973 332 22222 33456789999866645555556899999998642
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.. .......+. +......++++|+++++++++ .++.|.+||+.+...+.... . ....... ......+
T Consensus 113 g~----~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~---~---~~~~~~~-g~~p~~~ 180 (330)
T PRK11028 113 GI----PVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE---P---AEVTTVE-GAGPRHM 180 (330)
T ss_pred CC----CCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC---C---CceecCC-CCCCceE
Confidence 20 001122222 224467789999999886555 56999999998632220000 0 0000111 1223456
Q ss_pred EEeCC--eEEEEeC-CCeEEEeeCCCCccccCCCceeEEEecCC------CcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 366 AVVSN--LLFSGSS-DNTIRIWRRSSSVTDHQKGYSCLAVLEGH------RRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 366 ~~~~~--~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
.|+++ +++++.. ++.|.+|+++.. ....+.+..+..+ ......+.++|+++ +++
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~-------------~ly 243 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDP----HGEIECVQTLDMMPADFSDTRWAADIHITPDGR-------------HLY 243 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCC----CCCEEEEEEEecCCCcCCCCccceeEEECCCCC-------------EEE
Confidence 77654 7766665 899999999742 1112333333221 12234688999998 777
Q ss_pred Ecc-cCCcEEEEEe
Q 041325 437 SGS-LDCEIKIWQI 449 (450)
Q Consensus 437 s~~-~Dg~i~iw~l 449 (450)
++. .++.|.+|++
T Consensus 244 v~~~~~~~I~v~~i 257 (330)
T PRK11028 244 ACDRTASLISVFSV 257 (330)
T ss_pred EecCCCCeEEEEEE
Confidence 764 5789999987
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.4e-14 Score=127.78 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=123.4
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE--e
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW--K 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw--d 282 (450)
.|...+...+|+|+|+.|+.++.+ ..|.+||+.+++..... ...+....++|+|++..++++...+|.+.|| |
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 466689999999999999887643 36999999887543222 1223345789999666455555678876666 5
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
+.++. ...+..+...+....|+|||+.|+..+ .+|...||++...... . ..+ .+..
T Consensus 279 ~~~~~---------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------~---~~l-~~~~- 335 (429)
T PRK01742 279 ANGGT---------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------A---SLV-GGRG- 335 (429)
T ss_pred CCCCC---------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------e---EEe-cCCC-
Confidence 43332 223334556678899999999877655 5788888877532110 0 011 1222
Q ss_pred eEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc
Q 041325 362 ILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 362 v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~ 439 (450)
....|+ +++|+..+.++ +.+||+.++ ........+ ....+.|+|+++ +|+.++
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g--------~~~~lt~~~--~~~~~~~sPdG~-------------~i~~~s 390 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSG--------STEVLSSTF--LDESPSISPNGI-------------MIIYSS 390 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCC--------CeEEecCCC--CCCCceECCCCC-------------EEEEEE
Confidence 234455 55787777765 556998864 111111111 235678999999 899999
Q ss_pred cCCcEEEEEe
Q 041325 440 LDCEIKIWQI 449 (450)
Q Consensus 440 ~Dg~i~iw~l 449 (450)
.+|.+.+|++
T Consensus 391 ~~g~~~~l~~ 400 (429)
T PRK01742 391 TQGLGKVLQL 400 (429)
T ss_pred cCCCceEEEE
Confidence 9999888875
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-12 Score=115.00 Aligned_cols=280 Identities=15% Similarity=0.159 Sum_probs=165.4
Q ss_pred CEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 86 KLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 86 ~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+++ ++-..+|.|.|.|..+.+.+.. +......-..+.|++|+ +++++.||.|.++|+.+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--- 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVAR------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV--- 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEE------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE---
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEE------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE---
Confidence 444 4556789999999999887776 33333333456788765 88888999999999999843
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 241 (450)
+..++ -.....++++++||++++++. .++.+.++|.++
T Consensus 71 -------------v~~i~----------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 71 -------------VATIK----------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp -------------EEEEE-----------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred -------------EEEEe----------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 32322 122568899999999988775 689999999999
Q ss_pred CeEEEEeecc------cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC
Q 041325 242 FRCLESVKNA------HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD 315 (450)
Q Consensus 242 ~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 315 (450)
.+.+..+... ....+..+..++....++++--..+.|.+.|....+. +...............|+|+
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-------~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-------LKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-------EEEEEEE--TTEEEEEE-TT
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-------cceeeecccccccccccCcc
Confidence 9999888632 2346778877876665666666678888888755320 11111223345677899999
Q ss_pred CCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc--cceEEEEEeCCeEEEEeCCCeEEEeeCCCCccc
Q 041325 316 GTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT--KAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTD 392 (450)
Q Consensus 316 ~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 392 (450)
+++++++ ..+..|-++|..+++.....+...........-..|. ++++...-.+...++.-....+.+||...
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~---- 258 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA---- 258 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB----
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc----
Confidence 9987665 4577899999998876643222111110000000111 22333322233333333344566777665
Q ss_pred cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc----ccCCcEEEEEeC
Q 041325 393 HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG----SLDCEIKIWQIR 450 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~----~~Dg~i~iw~l~ 450 (450)
++.+..+.....+ .-+..+|+++ ++... ...++|.++|.+
T Consensus 259 ----wkvv~~I~~~G~g-lFi~thP~s~-------------~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 259 ----WKVVKTIPTQGGG-LFIKTHPDSR-------------YVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp ----TSEEEEEE-SSSS---EE--TT-S-------------EEEEE-TT-SSHT-EEEEECC
T ss_pred ----CeEEEEEECCCCc-ceeecCCCCc-------------cEEeeccCCCCCceEEEEECc
Confidence 6888888877776 7888899999 67766 566889999864
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-14 Score=120.57 Aligned_cols=265 Identities=15% Similarity=0.171 Sum_probs=175.7
Q ss_pred EEecCCCceEEEEEeCC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|..+.|+.. .|++|+.|..|.+||+.........
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------------------------------------ 180 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF------------------------------------ 180 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc------------------------------------
Confidence 36789999999999844 4999999999999999987432111
Q ss_pred ecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEE---EEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCL---ESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+|...|....|-| +...+++++.||.+++=.+.....+ ..+. .|.++|.-++.-|.....|.+++.
T Consensus 181 ------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~ge 253 (559)
T KOG1334|consen 181 ------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGE 253 (559)
T ss_pred ------ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc-cccCccceeeecCCCCCccccccc
Confidence 125777787777877 3456899999999998776543322 2233 789999999999988888999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhccc---ceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 350 (450)
|+.+.-+|++.+.- ..... .-..+.. ....++..|.. ..+++|+.|..+++||.+.-..-- .......+.
T Consensus 254 D~~v~~~Dlr~~~p----a~~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~-~n~~~~~f~ 327 (559)
T KOG1334|consen 254 DAVVFHIDLRQDVP----AEKFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE-NNGVLDKFC 327 (559)
T ss_pred ccceeeeeeccCCc----cceee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc-ccchhhhcC
Confidence 99999999987651 11111 2222333 56788888844 589999999999999987532110 000001111
Q ss_pred eeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCcc--ccC---CCceeEEEecCCCc--ceEEEEEE-ecCC
Q 041325 351 LKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVT--DHQ---KGYSCLAVLEGHRR--PVKCLTAV-VDSD 420 (450)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~--~~~---~~~~~~~~~~~h~~--~v~~l~~~-~~~~ 420 (450)
+..........|++++|+ +.-|.+.-.|-.|+++.-..+.. ... ......+.+++|.. .|..+-|- |...
T Consensus 328 p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 328 PHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE 407 (559)
T ss_pred CccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc
Confidence 111222334568999998 33445555666789985443211 000 00112223788864 46666553 3344
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
|+++||+-|.|.||+
T Consensus 408 -------------yVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 408 -------------YVVSGSDCGHIFIWD 422 (559)
T ss_pred -------------eEEecCccceEEEEe
Confidence 999999999999998
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-12 Score=118.16 Aligned_cols=231 Identities=15% Similarity=0.078 Sum_probs=143.6
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe---CCCeEEEEEcCCCceeEEeccCcccc
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH---QDHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.+||.+...... +..+...+...+|+||+ |+..+ .+..|.+|++.+++..
T Consensus 180 ~l~~~d~dg~~~~~-------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---------- 236 (429)
T PRK03629 180 ELRVSDYDGYNQFV-------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------- 236 (429)
T ss_pred eEEEEcCCCCCCEE-------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE----------
Confidence 68888877655332 33456689999999887 55433 2457899998876321
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCC--cEEEEecCCCeEEEE
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDR--TFKIWRTSDFRCLES 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~ 247 (450)
.+. ...+.+...+|+|||+.|+.. +.+| .|.+||+.+++....
T Consensus 237 ----~l~------------------------------~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l 282 (429)
T PRK03629 237 ----QVA------------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV 282 (429)
T ss_pred ----Ecc------------------------------CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc
Confidence 111 111234457899999988765 4444 588999988765443
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEE--eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW--KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
. .+...+....|+|+++.++++...++...+| |+..++ ...+...........|+|||++|+..+.+
T Consensus 283 t--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 283 T--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---------PQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred c--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---------eEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 3 2345678899999766455555555555555 554432 11112223345678999999998876543
Q ss_pred ---CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCe---EEEeeCCCCccccCCCc
Q 041325 326 ---RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNT---IRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 326 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~---v~iwd~~~~~~~~~~~~ 397 (450)
..|.+||+.+++.. ... ..+ ......|+ +.+|+.++.++. +.++++..
T Consensus 352 ~g~~~I~~~dl~~g~~~-----------~Lt--~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--------- 407 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ-----------VLT--DTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--------- 407 (429)
T ss_pred CCCceEEEEECCCCCeE-----------EeC--CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC---------
Confidence 35888998876532 111 111 11234454 557887777764 66777753
Q ss_pred eeEEEecCCCcceEEEEEEec
Q 041325 398 SCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~ 418 (450)
.....+.+|.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCeEECccCCCCcCCcccCCC
Confidence 345566678888888888863
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=107.30 Aligned_cols=282 Identities=12% Similarity=0.145 Sum_probs=174.7
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEE
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRV 151 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~i 151 (450)
.++..+++.+|+++|+++.- .+.|-|.++-+..... -.-+.|.-+.|..+. |.....|+.|.+
T Consensus 10 ~~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-------------~cldki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 10 LNPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-------------LCLDKIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred cCCceeECCCCCeeeeeeee-EEEEeccchhhHHHHH-------------HHHHHhhheeeeccceeeeeeeeccceEEE
Confidence 34455666699999999875 7888888887755431 123577788888666 556677899999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE-EEEEeC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL-LYSTSW 230 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~ 230 (450)
|++...+- . +....-...+..+.|+|+|+. |.+...
T Consensus 76 wsl~Qpew----------------~---------------------------ckIdeg~agls~~~WSPdgrhiL~tseF 112 (447)
T KOG4497|consen 76 WSLVQPEW----------------Y---------------------------CKIDEGQAGLSSISWSPDGRHILLTSEF 112 (447)
T ss_pred EEeeccee----------------E---------------------------EEeccCCCcceeeeECCCcceEeeeecc
Confidence 99987621 1 112234557899999999954 556667
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----------------------------------
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----------------------------------- 275 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------------------------- 275 (450)
|-+|.+|.+.+.+....- ..+..+..++|+|++. +.+..+.-
T Consensus 113 ~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 113 DLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred eeEEEEEEeccceeEEec--ccccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 999999999887654433 3445668888887544 43333321
Q ss_pred -CcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee------------
Q 041325 276 -TKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD------------ 341 (450)
Q Consensus 276 -g~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~------------ 341 (450)
..+.+||--- ....+.- ..-.+..++|+|.+++|++|+.|+.++|.+--+-+.+.+
T Consensus 190 g~~laVwd~~L----------eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~ 259 (447)
T KOG4497|consen 190 GNWLAVWDNVL----------EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTL 259 (447)
T ss_pred CcEEEEecchh----------hheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchh
Confidence 2233443200 0010111 225688899999999999999999999866443222100
Q ss_pred -------------------CCCCC--------C--------------ceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 342 -------------------GDDDS--------G--------------HMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 342 -------------------~~~~~--------~--------------~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
+.... . ...+..........+--++|+.+ +++|-...
T Consensus 260 ~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~ 339 (447)
T KOG4497|consen 260 HLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK 339 (447)
T ss_pred hhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC
Confidence 00000 0 00000111112234566788865 55544332
Q ss_pred --CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 379 --NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 379 --g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+.+-+||++.. + +...-....+|....|.|... .|+.+.....+++|.
T Consensus 340 ~PnalW~Wdlq~l--------~-l~avLiQk~piraf~WdP~~p-------------rL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 340 YPNALWLWDLQNL--------K-LHAVLIQKHPIRAFEWDPGRP-------------RLVVCTGKSRLYFWA 389 (447)
T ss_pred CCceEEEEechhh--------h-hhhhhhhccceeEEEeCCCCc-------------eEEEEcCCceEEEEc
Confidence 56899999862 2 223333567899999999988 666666666688885
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-12 Score=101.19 Aligned_cols=273 Identities=16% Similarity=0.215 Sum_probs=176.7
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-----CC-eEEEEeCCCeEEEEEcCCCceeEEeccC
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-----GD-KLFSAHQDHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 166 (450)
..|.+.++++...+..... . ........+..+.|. ++ .++-+..+|.|.++.......
T Consensus 44 R~Gkl~Lys~~d~~~~~l~--------~-~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s------- 107 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLD--------T-LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES------- 107 (339)
T ss_pred eccceEEEeecccccCccc--------e-eeeecccccceeeeeeccCCccceeeeccccceEEEEeecccee-------
Confidence 3467888888776644310 0 112233567777775 22 167777888999988765522
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE 246 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 246 (450)
...+..... .. -......++.|++.+..++++..+|.+.+-+........
T Consensus 108 ---------s~~L~~ls~-------------------~k--i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~ 157 (339)
T KOG0280|consen 108 ---------SVHLRGLSS-------------------KK--ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK 157 (339)
T ss_pred ---------eeeecccch-------------------hh--hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee
Confidence 111110000 00 001135678899989899999999999976665544333
Q ss_pred --EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEee
Q 041325 247 --SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGA 323 (450)
Q Consensus 247 --~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~ 323 (450)
.++ .|.-.++...|+..+.+++.+|+.|+.+..||+|-.+ .-..+..+.|...|.+|.-+| .+.+|++|+
T Consensus 158 vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 158 VQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc------ceeeecceeeecceEEEecCCCCCceEEEec
Confidence 566 8999999999998888899999999999999997332 012233456888999998887 678999999
Q ss_pred CCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCcee
Q 041325 324 CDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399 (450)
Q Consensus 324 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 399 (450)
.|-.|++||.++ +++++. ..-.+.|+.+.+.+. .++.+++-+..+|-+.+.+... -...
T Consensus 231 YDe~i~~~DtRnm~kPl~~--------------~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e---~~~~ 293 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFK--------------AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE---FQIV 293 (339)
T ss_pred cccceeeeehhcccCcccc--------------CccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc---hhee
Confidence 999999999994 444421 112277888888754 3344444444778777754221 1124
Q ss_pred EEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEE-EEE
Q 041325 400 LAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIK-IWQ 448 (450)
Q Consensus 400 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~-iw~ 448 (450)
+...+.|.+-+..-.|..... +|+|++ .|..++ +|-
T Consensus 294 ~~s~~~hdSl~YG~DWd~~~~-------------~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 294 LPSDKIHDSLCYGGDWDSKDS-------------FLATCSFYDKKIRQLWL 331 (339)
T ss_pred eeccccccceeeccccccccc-------------eeeeeeccccceeeeee
Confidence 445566777666666643333 788876 577755 773
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-11 Score=99.77 Aligned_cols=302 Identities=13% Similarity=0.161 Sum_probs=179.0
Q ss_pred CcceEEEEE--eCCE-EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCe
Q 041325 75 SSYIPSLAI--AGKL-LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHK 148 (450)
Q Consensus 75 ~~~v~~~~~--d~~~-l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~ 148 (450)
-+.|.-+.| |.-+ |.....|+.|.+|++...+.... .....+++.+++|+|++ |.+...|-.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck------------Ideg~agls~~~WSPdgrhiL~tseF~lr 115 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK------------IDEGQAGLSSISWSPDGRHILLTSEFDLR 115 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE------------eccCCCcceeeeECCCcceEeeeecceeE
Confidence 345666777 5444 44567789999999876654333 33455789999999988 777778999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCC-cceeEeeec---CceEEEee----cceeeeecCCCceEEEEEcc
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLN-DRFTKCFLA---NNYVQVRR----HKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~v~~~~~~~ 220 (450)
|.+|.+.+.+.....-.. .++....... .++...... ..++++.. .....+.-.+-..+.+.|+|
T Consensus 116 iTVWSL~t~~~~~~~~pK-------~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP 188 (447)
T KOG4497|consen 116 ITVWSLNTQKGYLLPHPK-------TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP 188 (447)
T ss_pred EEEEEeccceeEEecccc-------cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence 999999987543222111 1111111111 111111111 11111110 11112222344567788999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh------------
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL------------ 288 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------ 288 (450)
||+.+++ ||-.-.-.+..+ .-.-.+..++|+|. +.++++|+.|+.+|+.+--+-+.
T Consensus 189 dg~~laV---------wd~~Leykv~aY--e~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~d 256 (447)
T KOG4497|consen 189 DGNWLAV---------WDNVLEYKVYAY--ERGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHD 256 (447)
T ss_pred CCcEEEE---------ecchhhheeeee--eeccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccC
Confidence 8877664 443211111122 23357888999985 44999999999998865321110
Q ss_pred ---h---------------------------ccccc----------------hhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 289 ---Q---------------------------VNKKH----------------SLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 289 ---~---------------------------~~~~~----------------~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
. ..... ++...+....-.+.-++|++|..++++-
T Consensus 257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence 0 00000 0000111122346678999999999886
Q ss_pred eC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCce
Q 041325 323 AC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYS 398 (450)
Q Consensus 323 ~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 398 (450)
.. -+.+-+||++..+. ...-....+|.++.|++. .|+.+.....+++|...- ..
T Consensus 337 nd~~PnalW~Wdlq~l~l--------------~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg--------~~ 394 (447)
T KOG4497|consen 337 NDKYPNALWLWDLQNLKL--------------HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG--------PR 394 (447)
T ss_pred cCCCCceEEEEechhhhh--------------hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC--------ce
Confidence 54 35799999986542 233345678999999965 666666667799998763 23
Q ss_pred eEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 399 CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 399 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
++... ...-.|..+.|..++. .++-.+.|..
T Consensus 395 ~V~vP-~~GF~i~~l~W~~~g~-------------~i~l~~kDaf 425 (447)
T KOG4497|consen 395 VVGVP-KKGFNIQKLQWLQPGE-------------FIVLCGKDAF 425 (447)
T ss_pred EEecC-CCCceeeeEEecCCCc-------------EEEEEcCCce
Confidence 33333 3446799999999998 7888877763
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-11 Score=114.25 Aligned_cols=231 Identities=12% Similarity=0.038 Sum_probs=138.5
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC---CCeEEEEEcCCCceeEEeccCccc
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ---DHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
..|.+||........ +..+...+.+.+|+|++ |+..+. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~-------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT-------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------- 241 (433)
T ss_pred EEEEEECCCCCCceE-------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------
Confidence 358888886554322 34566789999999887 666553 346999999876321
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE-EEeCCC--cEEEEecCCCeEEE
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDR--TFKIWRTSDFRCLE 246 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~ 246 (450)
.+ ....+...+..|+|+|+.++ +.+.+| .|.+||+.+++...
T Consensus 242 -----~l------------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 242 -----LV------------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred -----Ee------------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 00 01222345678999998775 445555 59999998876543
Q ss_pred EeecccccceEEEEEeecCCcEEEEEcCCCc--EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 247 SVKNAHDDAINAIVVSKSNDGFVYTGSADTK--IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 247 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
+. .+........|+|++..++++...+|. |.++|+.+++. ..+..........+|+|||++|+..+.
T Consensus 287 -lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---------~~lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 287 -LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---------ERLTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred -Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---------EEeecCCCCccCEEECCCCCEEEEEEC
Confidence 33 344455678999866645555555665 55556544431 111112233456899999999987654
Q ss_pred CC---cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCC---CeEEEeeCCCCccccCCC
Q 041325 325 DR---SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSD---NTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 325 dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~v~iwd~~~~~~~~~~~ 396 (450)
++ .|.+||+.+++.. .+. +........|+ +++++..+.+ +.|.+++...
T Consensus 356 ~~~~~~I~v~d~~~g~~~--------------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-------- 412 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR--------------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-------- 412 (433)
T ss_pred CCCceeEEEEECCCCCeE--------------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--------
Confidence 43 6999999876532 111 11112234565 4555554442 3577777753
Q ss_pred ceeEEEecCCCcceEEEEEEe
Q 041325 397 YSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 397 ~~~~~~~~~h~~~v~~l~~~~ 417 (450)
.....+..+.+.+...+|+|
T Consensus 413 -~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 -RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CceEEcccCCCCCCCCccCC
Confidence 23344444556667777765
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-12 Score=101.96 Aligned_cols=259 Identities=16% Similarity=0.278 Sum_probs=161.9
Q ss_pred ceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC--ceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 77 YIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD--AVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 77 ~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
.|+.+.+ +...|+++..++.+.....-.+.+....+......+...+..|.+ +...+....+.++++..||.+.+.+
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 3777777 778888888888887777665554444333333333333333332 3344444455699999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe----
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS---- 229 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---- 229 (450)
.+..... ...++ ..|.+. -+.++...++.+.++.
T Consensus 118 ~~~~~~~---------------~~~i~--------------------------~~~~~~-as~~~~~~~~~i~s~~~g~~ 155 (319)
T KOG4714|consen 118 TDKDLAL---------------MSRIP--------------------------SIHSGS-ASRKICRHGNSILSGGCGNW 155 (319)
T ss_pred chHHHhh---------------hhhcc--------------------------cccccc-cccceeecccEEecCCcceE
Confidence 8753110 00000 001111 1122223344444332
Q ss_pred -CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 230 -WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 230 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
.-+..+.|+++..+.+..-. .....|.+++-+|...+++++|+.||.+-+||.+... .+...+..|+.+|+
T Consensus 156 n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~ 227 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIW 227 (319)
T ss_pred eeccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhh
Confidence 12345566665433322222 2334599999999888899999999999999998764 26778889999999
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCC-----------CCCceeeeccccCCccceEEEEEeCCeEEEEe
Q 041325 309 ALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDD-----------DSGHMVLKGALRGHTKAILCLAVVSNLLFSGS 376 (450)
Q Consensus 309 ~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 376 (450)
.+.|+| ++..|+++++||.+..||..+.-.-..... -.........+......|.++...+..|++|+
T Consensus 228 eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgt 307 (319)
T KOG4714|consen 228 EVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGT 307 (319)
T ss_pred heeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEecc
Confidence 999999 778999999999999999875211111000 01111222233344456777777899999999
Q ss_pred CCCeEEEee
Q 041325 377 SDNTIRIWR 385 (450)
Q Consensus 377 ~dg~v~iwd 385 (450)
.-+.|++++
T Consensus 308 d~eaIyl~~ 316 (319)
T KOG4714|consen 308 DAEAIYLTR 316 (319)
T ss_pred ccceEEEec
Confidence 999998875
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-12 Score=105.19 Aligned_cols=187 Identities=18% Similarity=0.272 Sum_probs=135.7
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
..+..++|++.-..++++..|-.|++||-.. ++...++......|.+++|-|.....|+.|+..| |.+|.....-...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3578899999777789999999999999877 6666776667789999999998877888888865 8999764322100
Q ss_pred ------cccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 291 ------NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 291 ------~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
......+....+| ..|++|+|.+||..+++++- |..|.|||..++..+ +.. ...-+.++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-----------pL~--~~glgg~s 242 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-----------PLI--PKGLGGFS 242 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-----------ccc--ccCCCcee
Confidence 0011112222334 68999999999999998875 678999999988654 111 22345677
Q ss_pred EEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 364 CLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 364 ~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
-+.|++ ++|+++.-|+..++|+.... +....... -.+.|....|+|+|..
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw~e~q~-------wt~erw~l-gsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLWQENQS-------WTKERWIL-GSGRVQTACWSPCGSF 294 (445)
T ss_pred eEEEcCCCCEEEEecccceeeeehhccc-------ceecceec-cCCceeeeeecCCCCE
Confidence 788875 59999999999999965432 23333333 3448999999999994
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-11 Score=111.14 Aligned_cols=173 Identities=11% Similarity=0.031 Sum_probs=113.2
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC---CCeEEEEEcCCCceeEEeccCcccc
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ---DHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.+||.+...... +..|...+...+|+||+ |+..+. +..|.+||+.+++..
T Consensus 183 ~l~~~d~dg~~~~~-------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------- 239 (435)
T PRK05137 183 RLAIMDQDGANVRY-------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------- 239 (435)
T ss_pred EEEEECCCCCCcEE-------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------
Confidence 67788876554322 45677899999999887 555543 468999999877321
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE-EEeCCCc--EEEEecCCCeEEEE
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDRT--FKIWRTSDFRCLES 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~ 247 (450)
.+..+.+.+...+|+|||+.|+ +.+.++. |.+||+.+++.. .
T Consensus 240 ----------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~ 284 (435)
T PRK05137 240 ----------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-R 284 (435)
T ss_pred ----------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-E
Confidence 1112344567789999998775 4455555 777798877654 3
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
+. .+........|+|++..++++...+| .|.++|+..++ ...+......+....|+|||+.|+....+
T Consensus 285 Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 285 LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---------PRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---------eEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 43 34555677899997664555544444 57777865543 11122223456678899999999887653
Q ss_pred ---CcEEEEEcCCC
Q 041325 326 ---RSILVWERDQG 336 (450)
Q Consensus 326 ---g~i~vwd~~~~ 336 (450)
..|.+||+..+
T Consensus 355 ~~~~~i~~~d~~~~ 368 (435)
T PRK05137 355 GGQFSIGVMKPDGS 368 (435)
T ss_pred CCceEEEEEECCCC
Confidence 36888887654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-10 Score=102.66 Aligned_cols=303 Identities=11% Similarity=0.091 Sum_probs=166.7
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEE
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLV 134 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 134 (450)
.-...+.+.+.++. .....-..+.| ||+++++++.||.|.++|+.+.+.+.... -.....+++
T Consensus 20 viD~~t~~~~~~i~--~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~-------------~G~~~~~i~ 84 (369)
T PF02239_consen 20 VIDGATNKVVARIP--TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK-------------VGGNPRGIA 84 (369)
T ss_dssp EEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--------------SSEEEEEE
T ss_pred EEECCCCeEEEEEc--CCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe-------------cCCCcceEE
Confidence 34455677888887 44333333555 89999999999999999999999776622 223568899
Q ss_pred EeCCe--EE-EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 135 VLGDK--LF-SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 135 ~~~~~--l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+++|+ ++ +...++.+.++|.++.+. +..++.... .......
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~----------------v~~I~~~~~--------------------~~~~~~~ 128 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEP----------------VKTIPTGGM--------------------PVDGPES 128 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--E----------------EEEEE--EE---------------------TTTS--
T ss_pred EcCCCCEEEEEecCCCceeEeccccccc----------------eeecccccc--------------------cccccCC
Confidence 98776 44 445689999999998843 222221100 0001334
Q ss_pred ceEEEEEccCCCEEEEEeC-CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLLYSTSW-DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+..+..++....++..-. .+.|.+.|....+.+..-............|.|++..++++...++.|.++|..+++...
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 6778888888876665554 488888888766543322213455678889998666566777788899999987765211
Q ss_pred cccchhhhhHhhcccceEEEEEcC----------CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 291 NKKHSLVQTLEKHKSAVTALALST----------DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~----------~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
. .-.--..|..+...+ .+| .+...++.-....+.+||..+.+.+ ..+.....
T Consensus 209 ~----i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv-------------~~I~~~G~ 270 (369)
T PF02239_consen 209 L----IDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV-------------KTIPTQGG 270 (369)
T ss_dssp E----EE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE-------------EEEE-SSS
T ss_pred E----eeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEE-------------EEEECCCC
Confidence 0 000001233333322 122 2222222222334556666665544 34444444
Q ss_pred ceEEEEEeCC--eEEEE----eCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceE
Q 041325 361 AILCLAVVSN--LLFSG----SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 361 ~v~~~~~~~~--~l~s~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
. .-+..+++ ++++. ...+.|.++|.++. +.+..+... ...+..+.|+++|++
T Consensus 271 g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--------~~~~~i~~~~~~~~~h~ef~~dG~~------------ 329 (369)
T PF02239_consen 271 G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--------KVVKTITPGPGKRVVHMEFNPDGKE------------ 329 (369)
T ss_dssp S---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------EEEE-HHHHHT--EEEEEE-TTSSE------------
T ss_pred c-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--------ceeEEEeccCCCcEeccEECCCCCE------------
Confidence 4 45555544 77766 45688999999873 455555322 235899999999993
Q ss_pred EEEEccc-CCcEEEEEe
Q 041325 434 LVYSGSL-DCEIKIWQI 449 (450)
Q Consensus 434 ~l~s~~~-Dg~i~iw~l 449 (450)
..+|.-. ++.|.+||-
T Consensus 330 v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEEEEE--TTEEEEEET
T ss_pred EEEEEecCCCEEEEEEC
Confidence 3344333 337999985
|
... |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-11 Score=111.80 Aligned_cols=218 Identities=14% Similarity=0.065 Sum_probs=127.9
Q ss_pred ecCCCceEEEEEeCCe--EEEEeC---CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQ---DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
..+...+.+.+|+|++ |+..+. ...|.+||+.+++...
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------------------------- 234 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------------------------- 234 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------------------------------
Confidence 4566789999999887 655543 2459999998773211
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEE-EEeCCCcEEEEe--cCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDRTFKIWR--TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
+....+.+...+|+|||+.|+ +.+.+|...||. +..+. ...+. .+........|+|++..+++++..+
T Consensus 235 -------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~ 305 (427)
T PRK02889 235 -------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRG 305 (427)
T ss_pred -------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCC
Confidence 011223456789999999876 456788766665 44443 44444 3444566788999766555565556
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeee
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
|...+|.+.... .....+ .+ ........+|+|||++|+..+.++ .|.+||+.+++...
T Consensus 306 g~~~Iy~~~~~~----g~~~~l-t~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~------------ 366 (427)
T PRK02889 306 GAPQIYRMPASG----GAAQRV-TF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA------------ 366 (427)
T ss_pred CCcEEEEEECCC----CceEEE-ec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE------------
Confidence 777777653211 000011 11 122334678999999998877654 69999998765321
Q ss_pred ccccCCccceEEEEEeC--CeEEEEeC-CCe--EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 353 GALRGHTKAILCLAVVS--NLLFSGSS-DNT--IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~--~~l~s~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
+... .......|++ +.|+..+. .|. +.+.+... .....+..+.+.+...+|+|-
T Consensus 367 --lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g---------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 367 --LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG---------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC---------CceEEeecCCCCCCCCccCCC
Confidence 1111 1123456664 45555544 333 44444432 233444456666777777764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-12 Score=102.21 Aligned_cols=261 Identities=14% Similarity=0.213 Sum_probs=151.8
Q ss_pred CCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCC-cee----eeecCCCCcceeEEecCCCceEEEEEeCCe----EEE
Q 041325 74 NSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNN-YVN----ITSTDVGDHANVVATGNGDAVKSLVVLGDK----LFS 142 (450)
Q Consensus 74 h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~-~~~----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s 142 (450)
....|+++.|| |.||++|...|.|.++..+... +.. .++.....-..+....-...|..+.|..+. ++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999994 8999999999999999765433 111 000000000000001112468889987443 888
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-ecCCCceEEEEEccC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-VHHVDTVSALALSSD 221 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~ 221 (450)
.+.|++|++|.+............ +.................+..-.....+..+...+...+ ..|...++++.++.|
T Consensus 105 stNdktiKlWKiyeknlk~va~nn-ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENN-LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccc-cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 889999999998765321111100 000000000000000000000001111112222222222 468889999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeE---EEEeec----ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc---
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRC---LESVKN----AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN--- 291 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--- 291 (450)
...++++. |-.|.+|+++-... +..+++ ....-|++..|+|...+.+.-.+..|.|++-|++....-..
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 98888765 78999999875332 222221 12346888999998888888899999999999985431100
Q ss_pred -----ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 292 -----KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 292 -----~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.......-+.+..+.|..+.|+++|++|++-+ --+|++||.+..+
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 01111222334456788999999999998765 3679999998654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-11 Score=108.91 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=134.7
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEee---CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGS---SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+.+. .+...+.+.+| ||+.|+..+ .+..|++|++.+++.... ....+.+...+|+||+
T Consensus 191 ~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-------------~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 191 QFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-------------ASFPRHNGAPAFSPDGS 255 (429)
T ss_pred CEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-------------cCCCCCcCCeEECCCCC
Confidence 34444 56678888899 899888654 245799999988764433 1122234567899887
Q ss_pred -EEE-EeCCC--eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 140 -LFS-AHQDH--KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 140 -l~s-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
|+. .+.+| .|.+||++++.... +..+...+..
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~--------------------------------------------lt~~~~~~~~ 291 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQ--------------------------------------------VTDGRSNNTE 291 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEE--------------------------------------------ccCCCCCcCc
Confidence 443 34455 48888987763210 1112335677
Q ss_pred EEEccCCCEEEEEeCC-Cc--EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--CcEEEEeCcchhhhc
Q 041325 216 LALSSDGSLLYSTSWD-RT--FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--TKIKVWKKLRAALQV 290 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~ 290 (450)
..|+|+|+.|+..+.+ +. |.++|+.+++.. .+. ..........|+|+++.+++++..+ ..|.+||+.+++..
T Consensus 292 ~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~- 368 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 368 (429)
T ss_pred eEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 8999999988777654 44 444567665443 333 2334456788998666444444444 35788898765411
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc---EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS---ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
.+. . ........|+|||++|+.++.++. +.++++.... ...+..|.+.+...+|
T Consensus 369 -----~Lt---~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~--------------~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 369 -----VLT---D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF--------------KARLPATDGQVKFPAW 425 (429)
T ss_pred -----EeC---C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC--------------eEECccCCCCcCCccc
Confidence 111 1 112345789999999999888764 6677775332 1345556666776766
Q ss_pred eC
Q 041325 368 VS 369 (450)
Q Consensus 368 ~~ 369 (450)
++
T Consensus 426 sp 427 (429)
T PRK03629 426 SP 427 (429)
T ss_pred CC
Confidence 64
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-12 Score=125.31 Aligned_cols=226 Identities=16% Similarity=0.260 Sum_probs=159.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--CeEEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--DKLFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~~~dg~ 148 (450)
.|-..|.++.- ...+.+||+.||.|++|....++.+..... .|. ..|+.+.|+. +.+..+..||.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt----------~g~-s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT----------AGN-SRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec----------cCc-chhhhhhhcccCCceeeeccCCc
Confidence 45566777766 578899999999999999888876655221 133 7888899984 44888899999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
+.+|..... +...++.|.....++.|-. ..++++
T Consensus 2275 l~l~q~~pk--------------------------------------------~~~s~qchnk~~~Df~Fi~--s~~~ta 2308 (2439)
T KOG1064|consen 2275 LSLWQASPK--------------------------------------------PYTSWQCHNKALSDFRFIG--SLLATA 2308 (2439)
T ss_pred eeecccCCc--------------------------------------------ceeccccCCccccceeeee--hhhhcc
Confidence 999998733 2233446888888888875 556665
Q ss_pred e---CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 229 S---WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 229 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
+ .++.+.+||..-......+...|.+.++++++.| ...++++|+.+|.|++||++..+ +.+.++.
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrq--------l~h~~~~--- 2376 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQ--------LRHTFQA--- 2376 (2439)
T ss_pred ccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHH--------HHHHhhh---
Confidence 4 5788999997643333333348999999999999 55599999999999999997766 6666654
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCe
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNT 380 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~ 380 (450)
+. ...++++|+..|.++||++.....+..+........+ -.+.+ ..+... .+.|++|+.||+
T Consensus 2377 ------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf----Fr~~g--~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 ------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF----FRNIG--MQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred ------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch----hhhcC--ceeeeccCceEEEecCCCC
Confidence 34 5678999999999999999876555433322211111 11111 222222 458888888874
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.3e-11 Score=103.67 Aligned_cols=144 Identities=19% Similarity=0.343 Sum_probs=120.7
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+-..++-|...|.|.+|++..++....+. ..|.+.|+++.++. .-+.|.+++.|+.+..|+..... ....
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~--------~~~~ 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV--------IIRI 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce--------eeee
Confidence 44568888899999999999999888876 57889999999875 44589999999999999986655 6777
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-------CC-e
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-------SN-L 371 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~-~ 371 (450)
+...+..+.+++.+|||..+++++ +.|++||+++++.+ ..+.+|.++|.+++|. |. +
T Consensus 140 ~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv-------------~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 140 WKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVV-------------ITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEE-------------EEecCCCcceEEEEEEEecccccccee
Confidence 778888899999999999999886 68999999998866 7899999999999986 34 4
Q ss_pred EEEEeCCCeEEEeeCCC
Q 041325 372 LFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~ 388 (450)
|.+...+..+.+|-+..
T Consensus 205 Lssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAERGITVWVVEK 221 (541)
T ss_pred eeccccccceeEEEEEc
Confidence 44555667788887764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-09 Score=97.26 Aligned_cols=299 Identities=15% Similarity=0.178 Sum_probs=168.6
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
....+..+++++.+|.|..+|..+++.......... ........++.++.++.+|.+..+|.++++..
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~------------~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDER------------LSGGVGADGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCC------------cccceEEcCCEEEEEcCCCEEEEEECCCCcEe
Confidence 344788899999999999999999987765332211 11123344666888999999999999888765
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc--eeeeec-CCCceEEEE--Ecc--CCCEEEEEeCCCc
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK--KCTWVH-HVDTVSALA--LSS--DGSLLYSTSWDRT 233 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~--~~~--~~~~l~~~~~dg~ 233 (450)
........ ....+...+....+...++.+...+.. ...+.. .......+. -+| .+..++.+..++.
T Consensus 129 W~~~~~~~-------~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~ 201 (377)
T TIGR03300 129 WRAKLSSE-------VLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGK 201 (377)
T ss_pred eeeccCce-------eecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCE
Confidence 43332211 000011011111111222222221111 111110 001100000 011 1346778888899
Q ss_pred EEEEecCCCeEEEEeeccccc---c------e-EEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 234 FKIWRTSDFRCLESVKNAHDD---A------I-NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
+..+|.++++.+......... . + ....+ .++.+++++.+|.+..||..+++. +.... .
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~--------~W~~~-~ 269 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRV--------LWKRD-A 269 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcE--------EEeec-c
Confidence 999999999876554311110 0 1 11112 234777888899999999987761 11111 1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEE
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRI 383 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~i 383 (450)
........ ++..+++++.||.|+.+|..+++.+.... .+. .....+....++.+++++.+|.|++
T Consensus 270 -~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~----------~~~--~~~~ssp~i~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 270 -SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKND----------ELK--YRQLTAPAVVGGYLVVGDFEGYLHW 334 (377)
T ss_pred -CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccc----------ccc--CCccccCEEECCEEEEEeCCCEEEE
Confidence 11112222 46778888899999999999987663221 111 1112233346789999999999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+|..++ +.+..+..+...+..--...++ .|+.++.||.|+.+
T Consensus 335 ~d~~tG--------~~~~~~~~~~~~~~~sp~~~~~--------------~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDG--------SFVARLKTDGSGIASPPVVVGD--------------GLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCC--------CEEEEEEcCCCccccCCEEECC--------------EEEEEeCCceEEEe
Confidence 998875 5555665555433333223333 48888899988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=107.66 Aligned_cols=178 Identities=13% Similarity=-0.004 Sum_probs=116.4
Q ss_pred cCCCceEEEEEccCCCEEEEEeC---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc--EEEEe
Q 041325 208 HHVDTVSALALSSDGSLLYSTSW---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK--IKVWK 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vwd 282 (450)
.|...+...+|+|||+.|+..+. +..|.+||+.+++... +. .+.+.+....|+|+++.++++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 46678999999999998887763 4689999998876543 33 355677788999977766667776665 66678
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.++. ...+..+........|+|||+.|+..+. +| .|++||+..++.. .+..+.
T Consensus 277 ~~~~~---------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--------------~lt~~~ 333 (435)
T PRK05137 277 LRSGT---------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--------------RISFGG 333 (435)
T ss_pred CCCCc---------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--------------EeecCC
Confidence 76654 1223334455677899999998887764 33 6888887755321 111123
Q ss_pred cceEEEEEe--CCeEEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 360 KAILCLAVV--SNLLFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
..+....|+ ++.|+..+.+ ..|.+||+..+ ....+. ....+....|+||++
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---------~~~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---------GERILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---------ceEecc-CCCCCCCCeECCCCC
Confidence 334455666 4466655543 35788887543 112222 223467889999998
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-11 Score=97.00 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=87.1
Q ss_pred CCCceEEEEEccCCCEEEEE--eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC---CCcEEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYST--SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---DTKIKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~ 283 (450)
..++|.+++|+|+|+.|++. ..++.|.+||++ ++.+..+. ...++.+.|+|.+. ++++++. .|.|.+||.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceEEEECCCCC-EEEEEEccCCCcEEEEEEC
Confidence 34579999999999987655 356799999996 66666664 46778999999655 6666553 467999999
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC------CCcEEEEEcCCCcee
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC------DRSILVWERDQGNYI 339 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~ 339 (450)
++.+ .+.... | ..++.++|+|||++|+++.. |+.++||+.. |+.+
T Consensus 133 ~~~~--------~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 133 RKKK--------KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred CCCE--------Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence 7554 444443 2 35789999999999999875 7889999985 5544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-11 Score=98.08 Aligned_cols=149 Identities=15% Similarity=0.280 Sum_probs=102.4
Q ss_pred EEEEEccCCCEEEEEeC----------CCcEEEEecCC-CeEEEEeecccccceEEEEEeecCCcEE-EEEcCCCcEEEE
Q 041325 214 SALALSSDGSLLYSTSW----------DRTFKIWRTSD-FRCLESVKNAHDDAINAIVVSKSNDGFV-YTGSADTKIKVW 281 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vw 281 (450)
..+.|+++|++|+.-.. -+...+|.++. ......+.....++|.+++|+|.++.++ +.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45778998887765433 13355555532 2344455434556799999999777654 345567899999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|++.. .+..+ ....+..+.|+|+|++|++++. .|.|.+||.++.+.+ ... +
T Consensus 89 d~~~~---------~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-------------~~~--~ 142 (194)
T PF08662_consen 89 DVKGK---------KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-------------STF--E 142 (194)
T ss_pred cCccc---------EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-------------ecc--c
Confidence 98522 33344 3467788999999999999874 467999999977655 222 2
Q ss_pred ccceEEEEEeCC--eEEEEeC------CCeEEEeeCCC
Q 041325 359 TKAILCLAVVSN--LLFSGSS------DNTIRIWRRSS 388 (450)
Q Consensus 359 ~~~v~~~~~~~~--~l~s~~~------dg~v~iwd~~~ 388 (450)
...++.++|+++ +++++.. |+.++||++..
T Consensus 143 ~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 143 HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 234688999855 7777764 78899999863
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=7e-11 Score=109.10 Aligned_cols=178 Identities=15% Similarity=0.056 Sum_probs=112.7
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEe
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWK 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd 282 (450)
.+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++..... ...+...+..|+|+++.++++.+.+| .|++||
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 355678899999999998887643 46999999887654332 23445567899997775666666665 588999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCc--EEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRS--ILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.+++ ...+..+.......+|+|||+.|+..+. +|. |+++|+.+++.. .+..+.
T Consensus 279 ~~~g~---------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--------------~lt~~g 335 (433)
T PRK04922 279 LGSRQ---------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--------------RLTFQG 335 (433)
T ss_pred CCCCC---------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--------------EeecCC
Confidence 87654 1222333444567899999998887764 444 666676655421 111111
Q ss_pred cceEEEEEe--CCeEEEEeCCC---eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 360 KAILCLAVV--SNLLFSGSSDN---TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
......+|+ +++|+..+.++ .|.+||+.++ .. ..+. +........|+||++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g--------~~-~~Lt-~~~~~~~p~~spdG~ 391 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG--------SV-RTLT-PGSLDESPSFAPNGS 391 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC--------Ce-EECC-CCCCCCCceECCCCC
Confidence 223345665 55666554332 5899998764 11 2232 222345678999998
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=100.74 Aligned_cols=221 Identities=21% Similarity=0.303 Sum_probs=166.6
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec-CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT-SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.+.+|.+.+++...-|...-+++.+.|.++++|-- +.++.-..+......++.++.+.+ ....|++|-.+|.+.-+.+
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEEEEh
Confidence 45678889999888887778999999999999953 345544445445677889999886 4557999999999998877
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee----eeC-----------------
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI----VDG----------------- 342 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~----~~~----------------- 342 (450)
...- ......+....|...+..+-|+-...++++.+.|..+.---.+.+..+ .+.
T Consensus 98 sedf----nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 98 SEDF----NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred hhhh----hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 5543 334456677789999999999888888888888877654444443321 000
Q ss_pred -------CCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEE
Q 041325 343 -------DDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCL 413 (450)
Q Consensus 343 -------~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 413 (450)
.-......+...+.+|...+.+++|++. .|++|..|..+.+||+.-. ......+.+|...|..+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-------~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-------KGTAYELQGHNDKVQAL 246 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC-------cceeeeeccchhhhhhh
Confidence 0011222344567889999999999954 9999999999999999743 24456778899999999
Q ss_pred EEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 414 TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
...+.-. .+++++.||.|.+|+++
T Consensus 247 ~~~~~t~-------------~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 247 SYAQHTR-------------QLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhe-------------eeeeccCCCeEEEEecc
Confidence 8888877 89999999999999974
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6e-11 Score=104.37 Aligned_cols=241 Identities=17% Similarity=0.179 Sum_probs=162.3
Q ss_pred ecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 124 TGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
..+....+.|..++|+ +++|...-.|++||+......
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------------------------- 87 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------------------------- 87 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceee----------------------------------------
Confidence 3677788999999888 888889999999999876321
Q ss_pred cceeeeecC--CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 201 HKKCTWVHH--VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 201 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
+..| ...|.-..++.|-..++.-..|..|.+..--....... -...-..++++.....+ +.++....|
T Consensus 88 -----FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~R----IP~~GRDm~y~~~scDl-y~~gsg~ev 157 (703)
T KOG2321|consen 88 -----FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTR----IPKFGRDMKYHKPSCDL-YLVGSGSEV 157 (703)
T ss_pred -----eeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeee----cCcCCccccccCCCccE-EEeecCcce
Confidence 1112 22344444555655566666677777654322111111 22344566666544434 444445678
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
+-++++.+. .+..+....+.++++..++...+|++|+.+|.|..||.++...+..+... .....|
T Consensus 158 YRlNLEqGr--------fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~-------~~v~s~ 222 (703)
T KOG2321|consen 158 YRLNLEQGR--------FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA-------SSVNSH 222 (703)
T ss_pred EEEEccccc--------cccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc-------cccCCC
Confidence 888987776 66777777789999999999999999999999999999987654322221 222233
Q ss_pred c-----cceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCc
Q 041325 359 T-----KAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSST 431 (450)
Q Consensus 359 ~-----~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 431 (450)
. ..|+++.|.++ .+++|..+|.|.|||+++. ...+..-++..-+|..+.|.+.+.
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-------~pl~~kdh~~e~pi~~l~~~~~~~----------- 284 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-------KPLLVKDHGYELPIKKLDWQDTDQ----------- 284 (703)
T ss_pred ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-------CceeecccCCccceeeecccccCC-----------
Confidence 3 34999999865 8999999999999999974 122233344466899999987733
Q ss_pred eEEEEEcccCCcEEEEE
Q 041325 432 SFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 432 ~~~l~s~~~Dg~i~iw~ 448 (450)
+..++|. +...++|||
T Consensus 285 q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWD 300 (703)
T ss_pred CceEEec-chHHhhhcc
Confidence 1145555 455688897
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-11 Score=98.72 Aligned_cols=271 Identities=14% Similarity=0.220 Sum_probs=160.8
Q ss_pred CCceEEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 127 GDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 127 ~~~v~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
.+-|.++.|. ++.|++|..+|.|.++.-+..... .+.....+...+..+ .-.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-----------ey~~~t~fqshepEF---------------DYL 78 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-----------EYNFQTEFQSHEPEF---------------DYL 78 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc-----------ceeeeeeeeccCccc---------------chh
Confidence 3567888887 555999999999999976544210 000000110000000 000
Q ss_pred eeecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCCCe-----------------------------------EEEE
Q 041325 205 TWVHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFR-----------------------------------CLES 247 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-----------------------------------~~~~ 247 (450)
.-..-...|+.+.|.+++ ..++..+.|.+|++|.+.... +.+.
T Consensus 79 kSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv 158 (433)
T KOG1354|consen 79 KSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV 158 (433)
T ss_pred hhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence 000123468888998854 467778889999999875421 1222
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDR 326 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg 326 (450)
+...|.--|+++.++. +.-.+....|=.|.+|+++-.....+.-......+.....-|++..|+| ..+.++-.+..|
T Consensus 159 ~aNaHtyhiNSIS~Ns--D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG 236 (433)
T KOG1354|consen 159 YANAHTYHINSISVNS--DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG 236 (433)
T ss_pred ccccceeEeeeeeecC--ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC
Confidence 3357788899999985 3334445567889999986533111111111223334456689999999 456788888899
Q ss_pred cEEEEEcCCCcee------eeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCce
Q 041325 327 SILVWERDQGNYI------VDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYS 398 (450)
Q Consensus 327 ~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 398 (450)
+|++.|++..... ++...+.. ...-+..--..|..+.|+ |++|++-+. -+|++||++.. .+
T Consensus 237 tIrLcDmR~~aLCd~hsKlfEepedp~---~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme-------~~ 305 (433)
T KOG1354|consen 237 TIRLCDMRQSALCDAHSKLFEEPEDPS---SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME-------AK 305 (433)
T ss_pred cEEEeechhhhhhcchhhhhccccCCc---chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc-------CC
Confidence 9999999954321 11111111 111122223456778887 568877543 57999999653 23
Q ss_pred eEEEecCCCc------------c---eEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 399 CLAVLEGHRR------------P---VKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 399 ~~~~~~~h~~------------~---v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++..+.-|.. . -..++|+-++. +++|||....++++++
T Consensus 306 pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-------------~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 306 PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-------------YVMTGSYNNVFRVFNL 358 (433)
T ss_pred cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-------------eEecccccceEEEecC
Confidence 4444444421 1 23456666666 9999999999999874
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=113.78 Aligned_cols=184 Identities=16% Similarity=0.245 Sum_probs=143.0
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce--EE---EEEeCCe--EEEEeCCCeEEEEEcCC
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV--KS---LVVLGDK--LFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~---l~~~~~~--l~s~~~dg~i~iw~~~~ 156 (450)
+...++.++.+..+.+||.......... .+...+ .+ +.++++. +++|+.-+.|.+|+...
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i-------------~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKI-------------QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhc-------------CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 6788888888999999998876644331 121111 11 1223343 88999999999999873
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKI 236 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 236 (450)
.. ....+.+|.+.+..+.++.+|.++++.++|..+++
T Consensus 165 dn-------------------------------------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRl 201 (967)
T KOG0974|consen 165 DN-------------------------------------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRL 201 (967)
T ss_pred cC-------------------------------------------CcceecccCCceEEEEEccCCcEEEEEecCcceee
Confidence 31 11135589999999999999999999999999999
Q ss_pred EecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc-cceEEEEEcCC
Q 041325 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK-SAVTALALSTD 315 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~l~~~~~ 315 (450)
|++++.+......-+|...+..+.+.|. .+++++.|-+.++|+....+ +..+.+|. ..|..++..++
T Consensus 202 W~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~---------l~~y~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 202 WPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ---------LEVYDEHSGKGIWKIAVPIG 269 (967)
T ss_pred eecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccce---------ehhhhhhhhcceeEEEEcCC
Confidence 9999988777444489999999999963 89999999999999754333 33555554 56999999999
Q ss_pred CCEEEEeeCCCcEEEEEcCC
Q 041325 316 GTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 316 ~~~l~~g~~dg~i~vwd~~~ 335 (450)
...+++++.||.+++||+..
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEeeccCcchhhhhhhc
Confidence 99999999999999999865
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-10 Score=103.54 Aligned_cols=355 Identities=12% Similarity=0.095 Sum_probs=214.9
Q ss_pred CCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE-------e-C------CEEEEeeCCCcEEEecCCCCCceeeee
Q 041325 47 LAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI-------A-G------KLLYGGSSNGEIRAWNRDPNNYVNITS 112 (450)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-------d-~------~~l~tgs~dg~v~vw~~~~~~~~~~~~ 112 (450)
++..+.+.+..-...+.|.++++. -|...|+.+.| | + -+||++...|.|.+||...+.....
T Consensus 29 iAygshslV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-- 104 (1062)
T KOG1912|consen 29 IAYGSHSLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-- 104 (1062)
T ss_pred EEEecCceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--
Confidence 444455555555667778999999 89999999999 1 1 3678888899999999987765554
Q ss_pred cCCCCcceeEEecCCCceEEEEEeCC------eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcce
Q 041325 113 TDVGDHANVVATGNGDAVKSLVVLGD------KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRF 186 (450)
Q Consensus 113 ~~~~~~~~~~~~~h~~~v~~l~~~~~------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (450)
+..|..++..++|.+. .|++-..-.++.+|+..+++.......... ...++..-|.+...+
T Consensus 105 ----------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~---iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 105 ----------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE---ILSCFRVDPFDSRHF 171 (1062)
T ss_pred ----------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc---ceeeeeeCCCCcceE
Confidence 5678889999999732 277777778999999998875433322211 111111112111111
Q ss_pred eEeeecC-----------------ceEEEee-------------------------------------------------
Q 041325 187 TKCFLAN-----------------NYVQVRR------------------------------------------------- 200 (450)
Q Consensus 187 ~~~~~~~-----------------~~~~~~~------------------------------------------------- 200 (450)
......+ ..+++..
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 1100000 0000000
Q ss_pred -----------cceeeeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCC----------------CeEEEEeecc
Q 041325 201 -----------HKKCTWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSD----------------FRCLESVKNA 251 (450)
Q Consensus 201 -----------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~ 251 (450)
.......-..+.+.-+.+-|+ .+.|++.-.||.+.+|--+. +.....+...
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m 331 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM 331 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeec
Confidence 000001112223334555554 45688888999999997654 2222222212
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc-----------------------hhhhhHhhcccceE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH-----------------------SLVQTLEKHKSAVT 308 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------------------~~~~~~~~~~~~i~ 308 (450)
.+..+......|.....++.--.+|.+.+|.+.+++....... ..+....+|....+
T Consensus 332 ~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~ 411 (1062)
T KOG1912|consen 332 EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGST 411 (1062)
T ss_pred hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCce
Confidence 2233334444554454555556678889999886553211100 01111123444444
Q ss_pred EEEEcC-----------CC-------CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 309 ALALST-----------DG-------TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 309 ~l~~~~-----------~~-------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+....| .+ .+++.|...|+|.++|+.++.. ...+..|...|.++.|.|+
T Consensus 412 ~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v-------------~~~fsvht~~VkgleW~g~ 478 (1062)
T KOG1912|consen 412 CVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAV-------------AASFSVHTSLVKGLEWLGN 478 (1062)
T ss_pred eeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhh-------------hhhhcccccceeeeeeccc
Confidence 444332 22 3688899999999999998753 3678889999999999977
Q ss_pred -eEEEEeC----------CCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 371 -LLFSGSS----------DNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 371 -~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
.+++.+. -+.+.+-|+++|.. +.++. -+....+|..+..+..+. ||+..
T Consensus 479 sslvSfsys~~n~~sg~vrN~l~vtdLrtGls------k~fR~l~~~despI~~irvS~~~~-------------yLai~ 539 (1062)
T KOG1912|consen 479 SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS------KRFRGLQKPDESPIRAIRVSSSGR-------------YLAIL 539 (1062)
T ss_pred eeEEEeeeccccccccceeeeEEEEEcccccc------cccccCCCCCcCcceeeeecccCc-------------eEEEE
Confidence 4444332 24567888888632 11221 233567899999999998 99999
Q ss_pred ccCCcEEEEEeC
Q 041325 439 SLDCEIKIWQIR 450 (450)
Q Consensus 439 ~~Dg~i~iw~l~ 450 (450)
-.|.-+.+||+|
T Consensus 540 Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 540 FRREPLEIWDLK 551 (1062)
T ss_pred ecccchHHHhhc
Confidence 999999999985
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-12 Score=123.24 Aligned_cols=192 Identities=18% Similarity=0.317 Sum_probs=145.1
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
...+-..|.++.-+|.. .+||+.||.|++|....++.+.....
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt----------------------------------- 2248 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT----------------------------------- 2248 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-----------------------------------
Confidence 44555667777766655 88999999999999998854321111
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc---CCCc
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS---ADTK 277 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~ 277 (450)
.-...|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+ .|......+.|. . ..+++++ .++.
T Consensus 2249 -------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi--~-s~~~tag~s~d~~n 2316 (2439)
T KOG1064|consen 2249 -------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFI--G-SLLATAGRSSDNRN 2316 (2439)
T ss_pred -------cCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc-cCCccccceeee--e-hhhhccccCCCCCc
Confidence 122578999999999999999999999999997 55666666 788888888888 3 3556654 4789
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+.+||..-.. ....+. ..|.+.++++++-|..++|++|+.+|.|++||++..+.. +.++.
T Consensus 2317 ~~lwDtl~~~-----~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~-------------h~~~~ 2376 (2439)
T KOG1064|consen 2317 VCLWDTLLPP-----MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR-------------HTFQA 2376 (2439)
T ss_pred ccchhcccCc-----ccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH-------------HHhhh
Confidence 9999974432 111233 679999999999999999999999999999999965433 22222
Q ss_pred CccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 358 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+. ..+++++|+..|.++||++...
T Consensus 2377 -------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 -------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred -------hh-hhheeeccCcccceEEEEcccc
Confidence 22 3569999999999999998863
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=103.12 Aligned_cols=187 Identities=14% Similarity=0.257 Sum_probs=145.2
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecc--cccceEEEEEee-------------------cCCcEEEEEcCCCcE
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA--HDDAINAIVVSK-------------------SNDGFVYTGSADTKI 278 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~-------------------~~~~~l~~~~~dg~i 278 (450)
|...++|....||.+++||...++....+... ..+...+..|.- .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999998887777521 123344444431 112268889999999
Q ss_pred EEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.+|++..++ ....+ ..|.+.|.++.++.+-..|.+++.|+.+..|+....+.+ ....
T Consensus 83 ~~ys~~~g~--------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-------------~~~~ 141 (541)
T KOG4547|consen 83 LLYSVAGGE--------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-------------RIWK 141 (541)
T ss_pred EEEEecCCe--------EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee-------------eeec
Confidence 999998776 33333 358899999999988899999999999999999987654 5566
Q ss_pred CCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec-----CCCCCCCCCCC
Q 041325 357 GHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD-----SDYSNRNSDHS 429 (450)
Q Consensus 357 ~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~~~~~~~~~ 429 (450)
.....+.++.+.++ .+++++ +.|++||++++ +.+..+.+|.++|.+++|..+ |.+
T Consensus 142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k--------evv~~ftgh~s~v~t~~f~~~~~g~~G~~-------- 203 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK--------EVVITFTGHGSPVRTLSFTTLIDGIIGKY-------- 203 (541)
T ss_pred cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc--------eEEEEecCCCcceEEEEEEEeccccccce--------
Confidence 66677788888877 777665 67999999985 889999999999999999988 342
Q ss_pred CceEEEEEcccCCcEEEEEe
Q 041325 430 STSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|.+...+..|.+|-+
T Consensus 204 ----vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 204 ----VLSSAAAERGITVWVV 219 (541)
T ss_pred ----eeeccccccceeEEEE
Confidence 6667777777888865
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-10 Score=92.06 Aligned_cols=250 Identities=16% Similarity=0.139 Sum_probs=153.6
Q ss_pred CcceEEEEE-----eCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--CeEEEEeCC
Q 041325 75 SSYIPSLAI-----AGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--DKLFSAHQD 146 (450)
Q Consensus 75 ~~~v~~~~~-----d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~~~d 146 (450)
...+..+.| +|. .++-+-.+|.|.++................... ......++.|+. ..++++..+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki------~~~~~lslD~~~~~~~i~vs~s~ 142 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI------SVVEALSLDISTSGTKIFVSDSR 142 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh------hheeeeEEEeeccCceEEEEcCC
Confidence 445666666 465 566677789999887654432222111110000 000234455553 348888888
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
|.+.+-+..... -+....++.|.-++....|+. +.+++
T Consensus 143 G~~~~v~~t~~~-----------------------------------------le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 143 GSISGVYETEMV-----------------------------------------LEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred CcEEEEecceee-----------------------------------------eeecccccccceeeeeeecccCCCceE
Confidence 888755544331 122334567888999999987 66899
Q ss_pred EEEeCCCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 226 YSTSWDRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
.+|+.|+.+..||++ .++.+..-...|...|.+|.-+|....++++|+.|-.|++||.|+-. +++..-. ..
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-------kPl~~~~-v~ 253 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-------KPLFKAK-VG 253 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-------CccccCc-cc
Confidence 999999999999999 44455443336889999999999878899999999999999998533 1232222 34
Q ss_pred cceEEEEEcCC--CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEe-CCC
Q 041325 305 SAVTALALSTD--GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS-SDN 379 (450)
Q Consensus 305 ~~i~~l~~~~~--~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~-~dg 379 (450)
+.|+.+..+|. +.+|+++-.+| .+|-+...+..- ........+.|.+-+..-.|+. ..++||+ .|+
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e--------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk 324 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE--------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDK 324 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc--------hheeeeccccccceeeccccccccceeeeeecccc
Confidence 88999999993 33444444444 666666543210 1112234455655555555532 2577765 466
Q ss_pred eEE-EeeCCC
Q 041325 380 TIR-IWRRSS 388 (450)
Q Consensus 380 ~v~-iwd~~~ 388 (450)
.++ +|-.-+
T Consensus 325 ~~~~~Wl~~t 334 (339)
T KOG0280|consen 325 KIRQLWLHIT 334 (339)
T ss_pred ceeeeeeecc
Confidence 644 665443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-08 Score=88.40 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=166.5
Q ss_pred EEEeeCC----CcEEEecC--CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC----CCeEEEEEcC
Q 041325 88 LYGGSSN----GEIRAWNR--DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ----DHKIRVWKID 155 (450)
Q Consensus 88 l~tgs~d----g~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~----dg~i~iw~~~ 155 (450)
++.|+.. +.|.+|++ +++++.... ..........|+++++. |+++.. ++.|..|++.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~-----------~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~ 70 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQ-----------TVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRID 70 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEE-----------EEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEee-----------eecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEEC
Confidence 4555555 78999988 344433221 11233456677887665 766655 5789999887
Q ss_pred CCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcE
Q 041325 156 NNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTF 234 (450)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 234 (450)
..... +..+...+ ........++++|++++|+++. .+|.|
T Consensus 71 ~~~g~------------L~~~~~~~---------------------------~~g~~p~~i~~~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 71 PDTGT------------LTLLNSVP---------------------------SGGSSPCHIAVDPDGRFLYVANYGGGSV 111 (345)
T ss_dssp TTTTE------------EEEEEEEE---------------------------ESSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCcce------------eEEeeeec---------------------------cCCCCcEEEEEecCCCEEEEEEccCCeE
Confidence 64100 01111111 1233556799999999988886 58999
Q ss_pred EEEecCC-CeEEEE---ee---------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH-
Q 041325 235 KIWRTSD-FRCLES---VK---------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL- 300 (450)
Q Consensus 235 ~iwd~~~-~~~~~~---~~---------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~- 300 (450)
.++++.. +..... +. ........++.++|+++.++++.-....|.+|++...... ......+
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~----l~~~~~~~ 187 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK----LTPVDSIK 187 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T----EEEEEEEE
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce----EEEeeccc
Confidence 9999987 433332 21 0123457889999976655666666678999998664411 1011111
Q ss_pred hhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcC--CCceeeeCCCCCCceeeecccc-C--CccceEEEEEe--CCeE
Q 041325 301 EKHKSAVTALALSTDGTVLYSGAC-DRSILVWERD--QGNYIVDGDDDSGHMVLKGALR-G--HTKAILCLAVV--SNLL 372 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~--~~~l 372 (450)
.......+.++|+|+++++++..+ ++.|.++++. +++... ......+. . .......+.++ +++|
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~ispdg~~l 259 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE--------IQTISTLPEGFTGENAPAEIAISPDGRFL 259 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE--------EEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE--------EEEeeeccccccccCCceeEEEecCCCEE
Confidence 123456789999999998876654 7789999988 332210 00001110 1 11245667776 4555
Q ss_pred EE-EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 373 FS-GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 373 ~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
++ .-.++.|.+|++... ....+.+..+.........++++|+++ +|+++. .++.|.+|++
T Consensus 260 yvsnr~~~sI~vf~~d~~----~g~l~~~~~~~~~G~~Pr~~~~s~~g~-------------~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPA----TGTLTLVQTVPTGGKFPRHFAFSPDGR-------------YLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEECTTTEEEEEEECTT----TTTEEEEEEEEESSSSEEEEEE-TTSS-------------EEEEEETTTTEEEEEEE
T ss_pred EEEeccCCEEEEEEEecC----CCceEEEEEEeCCCCCccEEEEeCCCC-------------EEEEEecCCCeEEEEEE
Confidence 54 446788999999532 223455555554445578999999999 666554 7778999876
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=110.10 Aligned_cols=298 Identities=14% Similarity=0.157 Sum_probs=182.4
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC--CceEEEEEeCC----eEEEEeCC
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG--DAVKSLVVLGD----KLFSAHQD 146 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~----~l~s~~~d 146 (450)
.+++.+++. .|+-+|.++.-| +.+-|++..-.... ...|. -.|-.+.|++. .-++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr------------~l~h~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR------------WLHHITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce------------eeeccCcchhcceecccCCCCceeEEecCc
Confidence 456677777 688888888876 44556554221110 11222 23455566632 23333334
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
..-.+|++..... +.....+-+|...|+.+-|+| ....+
T Consensus 91 qkaiiwnlA~ss~----------------------------------------~aIef~lhghsraitd~n~~~q~pdVl 130 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSS----------------------------------------NAIEFVLHGHSRAITDINFNPQHPDVL 130 (1081)
T ss_pred chhhhhhhhcCCc----------------------------------------cceEEEEecCccceeccccCCCCCcce
Confidence 5567888765421 112234457999999999999 56789
Q ss_pred EEEeCCCcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 226 YSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
++++-|-.+..||+++... +..+. .-......+.|+..+. .+++.+..+.|++||.+.+. .++..+++|.
T Consensus 131 atcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs-------~pl~s~K~~v 201 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGS-------TPLCSLKGHV 201 (1081)
T ss_pred eeccccccceeeeccCCCcceeeee-cccccCceeeecccCc-chhhhccCCceEEEeccCCC-------cceEEecccc
Confidence 9999999999999998653 33333 3445668899997555 45555666789999998665 3566777788
Q ss_pred cceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CC--eEEEEeCCC
Q 041325 305 SAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SN--LLFSGSSDN 379 (450)
Q Consensus 305 ~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~s~~~dg 379 (450)
..|..++|.. ....+++.+.||+|+.||........ ........+|..-.+. ++ ++.---.+.
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~------------~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n 269 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES------------KRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN 269 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeeccccccccc------------ceeccccCcceeccccccCceeEeccccCCe
Confidence 8899998876 33468889999999999987543110 0011111222222211 11 111111111
Q ss_pred eEEEeeCCCCccc--cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTD--HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+.+++-+..... ......++..+.||...|....|-..+. ..-+.+.....|+|-|.|..+++|-+
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e---~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE---CDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc---ccCCCCccceeEEEeecCCceEeeec
Confidence 3333322221100 0112578999999999999988876655 11233445668999999999999976
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=108.65 Aligned_cols=296 Identities=14% Similarity=0.174 Sum_probs=181.9
Q ss_pred EeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCC
Q 041325 69 LKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD 146 (450)
Q Consensus 69 l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d 146 (450)
-.+.||+..|++++. +.+-+++++.|.+|++|.++...-. .........+..|+.+|.++.|..+.-..++.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKKPIHDIGFLADLRSIASCD 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccCcccceeeeeccceeeecc
Confidence 334499999999988 6899999999999999998643210 001112345779999999999998875666778
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
|-|.+||.--+.. +..+.... -.+..+.|.|+. +-+..++.
T Consensus 804 ~giHlWDPFigr~----------------Laq~~dap----------------------k~~a~~~ikcl~-nv~~~ili 844 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRL----------------LAQMEDAP----------------------KEGAGGNIKCLE-NVDRHILI 844 (1034)
T ss_pred Ccceeecccccch----------------hHhhhcCc----------------------ccCCCceeEecc-cCcchhee
Confidence 9999999765521 11111000 001122333332 11344555
Q ss_pred EE-eCCCcEEEEecCCCeEEEEeec----ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 227 ST-SWDRTFKIWRTSDFRCLESVKN----AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 227 ~~-~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+| +...+|+++|.+..+-...++. .....+.++++.+ .++.++++-.+|.|.+.|.++++ .+..+.
T Consensus 845 AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~--------vINswr 915 (1034)
T KOG4190|consen 845 AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGK--------VINSWR 915 (1034)
T ss_pred eeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCc--------eeccCC
Confidence 54 6789999999998876666552 3346688999987 45589999999999999999887 333333
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEE-EEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCe
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILV-WERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNT 380 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 380 (450)
...-....++ .|..+.|+....|.++.+ |...++...++...+. .+..-+.-.|.-+++......
T Consensus 916 pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp-------------epahflqsvgpSLV~a~~Gn~ 981 (1034)
T KOG4190|consen 916 PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP-------------EPAHFLQSVGPSLVTAQNGNI 981 (1034)
T ss_pred cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC-------------cchhhhhccCceeEEeccCcE
Confidence 2222222222 245567777777888888 8877665443222221 111122222456667777777
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
+.+|.-... ......... .......+..++++..|-.. -+..|...|.|.+
T Consensus 982 lgVYad~a~-~ha~stitK-iR~d~f~G~lTala~LPLN~-------------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 982 LGVYADSAE-LHAESTITK-IRPDEFPGTLTALAPLPLNC-------------AFLAGNEHGAIAL 1032 (1034)
T ss_pred EEEEecchh-hhhhhhhcc-ccccccCCccceeeeccccc-------------hhhccCCCCceee
Confidence 788742211 000000001 11122456677888878766 6778888888875
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.8e-10 Score=102.10 Aligned_cols=178 Identities=14% Similarity=0.047 Sum_probs=113.2
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEe
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWK 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd 282 (450)
.+...+...+|+|+|++|+.+..+ ..|.+||+.+++..... .+...+.++.|+|+++.++++...++ .|.+||
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 355568888999999999887644 47999999987654333 34456677899997665666666555 588888
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.++. ...+..+........|+|||+.|+..+. ++ .|+++|+.+++.. .+..+.
T Consensus 265 ~~~~~---------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--------------~l~~~~ 321 (417)
T TIGR02800 265 LDGKQ---------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--------------RLTFRG 321 (417)
T ss_pred CCCCC---------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--------------EeecCC
Confidence 86654 1112223334456789999998876654 33 5778887765421 122223
Q ss_pred cceEEEEEe--CCeEEEEeCCC---eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 360 KAILCLAVV--SNLLFSGSSDN---TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
..+....|+ +++++.++.++ .|.+||+.++ ....+... .......|+|+++
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---------~~~~l~~~-~~~~~p~~spdg~ 377 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---------GERVLTDT-GLDESPSFAPNGR 377 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---------CeEEccCC-CCCCCceECCCCC
Confidence 344556666 45777777665 7888888753 11222221 2234567899988
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-09 Score=101.45 Aligned_cols=174 Identities=17% Similarity=0.098 Sum_probs=110.4
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC---CeEEEEEcCCCceeEEeccCcccc
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD---HKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.++|.+...... +..+...+...+|+|++ |+.+..+ ..|++||+.++....
T Consensus 171 ~l~~~d~~g~~~~~-------------l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------- 228 (417)
T TIGR02800 171 ELQVADYDGANPQT-------------ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------- 228 (417)
T ss_pred eEEEEcCCCCCCEE-------------eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------
Confidence 46677765443222 34556678888999887 5555433 479999998763210
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE-EeCCC--cEEEEecCCCeEEEE
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS-TSWDR--TFKIWRTSDFRCLES 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~ 247 (450)
+..+.+.+.+++|+|+++.|+. .+.++ .|.+||+.+++...
T Consensus 229 -----------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~- 272 (417)
T TIGR02800 229 -----------------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR- 272 (417)
T ss_pred -----------------------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-
Confidence 1123334567889999987764 44444 58889998765433
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
+. .+........|+|++..++++...++ .|.++|+..++ ...+..+........|+|+|++|+.++.+
T Consensus 273 l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---------~~~l~~~~~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 273 LT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---------VRRLTFRGGYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------EEEeecCCCCccCeEECCCCCEEEEEEcc
Confidence 33 23344456788886654555554444 46677765443 11222234556778999999999988877
Q ss_pred C---cEEEEEcCCCc
Q 041325 326 R---SILVWERDQGN 337 (450)
Q Consensus 326 g---~i~vwd~~~~~ 337 (450)
+ .|.+||+.++.
T Consensus 343 ~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 343 GGGFNIAVMDLDGGG 357 (417)
T ss_pred CCceEEEEEeCCCCC
Confidence 6 78999988654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-10 Score=102.21 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=111.5
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
.+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... . ...+.+....|+|+++.++++.+.+|...+|.+.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-A-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-e-cCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 355678899999999998877643 3599999998875433 2 2345567889999777566677888887777653
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcC--CCceeeeCCCCCCceeeeccccCCccc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERD--QGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
... . ....+..+........|+|||+.|+..+. +|...+|.+. +++.. . ....+ ..
T Consensus 271 ~~~----~---~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-----------~-lt~~g--~~ 329 (427)
T PRK02889 271 ADG----S---GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-----------R-VTFTG--SY 329 (427)
T ss_pred CCC----C---CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----------E-EecCC--CC
Confidence 211 0 12223334444567889999998886654 4566666543 33211 0 01111 11
Q ss_pred eEEEEEe--CCeEEEEeCCC---eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 362 ILCLAVV--SNLLFSGSSDN---TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 362 v~~~~~~--~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
....+|+ +++|+..+.++ .|.+||+.++ . ...+... .......|+||++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g--------~-~~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG--------Q-VTALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC--------C-eEEccCC-CCccCceECCCCC
Confidence 2234555 56777666554 5999999864 1 1222222 2346789999998
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-09 Score=98.23 Aligned_cols=175 Identities=17% Similarity=0.087 Sum_probs=108.5
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC---CeEEEEEcCCCceeEEeccCcccc
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD---HKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.++|.+.+.... +..+...+....|+|++ |+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~~~~-------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------- 237 (430)
T PRK00178 180 TLQRSDYDGARAVT-------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------- 237 (430)
T ss_pred EEEEECCCCCCceE-------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---------
Confidence 37777776554322 34566788999999887 6554433 368889998763211
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE-EeCCC--cEEEEecCCCeEEEE
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS-TSWDR--TFKIWRTSDFRCLES 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~ 247 (450)
+ ....+.+....|+|+|+.|+. ...+| .|.+||+.+++...
T Consensus 238 -----l------------------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~- 281 (430)
T PRK00178 238 -----I------------------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR- 281 (430)
T ss_pred -----c------------------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-
Confidence 0 011223446889999998774 44454 58888998876543
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
+. .+........|+|+++.++++...+| .|.++|+.+++.. .+ ... ........|+|||++|+..+.+
T Consensus 282 lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~------~l-t~~--~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 282 VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE------RV-TFV--GNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE------Ee-ecC--CCCccceEECCCCCEEEEEEcc
Confidence 33 34445667789987665666655555 4666676554411 11 111 1223457899999999877653
Q ss_pred -C--cEEEEEcCCCce
Q 041325 326 -R--SILVWERDQGNY 338 (450)
Q Consensus 326 -g--~i~vwd~~~~~~ 338 (450)
+ .|.+||+.+++.
T Consensus 352 ~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 352 DGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCceEEEEEECCCCCE
Confidence 3 588899887653
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-08 Score=99.91 Aligned_cols=317 Identities=13% Similarity=0.128 Sum_probs=183.4
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEe----cCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAW----NRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH 144 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~ 144 (450)
...+.|.++.+ +...++.+..+|.|.+. +......... ..-...|.+++|+||. |+.++
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V-------------G~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV-------------GSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE-------------EEEcCcEEEEEECCCcCEEEEEe
Confidence 34568889988 88889999999999999 5554443322 2234689999999998 77777
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE------------ee-----cceeeee
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV------------RR-----HKKCTWV 207 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~ 207 (450)
.++++.+..-+=.-..... +..-......+..+.-+...-+. .. .....+.
T Consensus 140 ~~~~l~~mt~~fd~i~E~~------------l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s 207 (928)
T PF04762_consen 140 GEGNLLLMTRDFDPISEVP------------LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS 207 (928)
T ss_pred CCCEEEEEeccceEEEEee------------cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc
Confidence 7888887753322111000 00000001111111111100000 00 0011222
Q ss_pred cCCCceEEEEEccCCCEEEEEeC---C---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC---CCcE
Q 041325 208 HHVDTVSALALSSDGSLLYSTSW---D---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---DTKI 278 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i 278 (450)
+.+.-..++|-.||.++|+.+. . ..+++|+-+ |.....-. .-.+--.+++|.|.+. ++++... ...|
T Consensus 208 -~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 -WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGN-LIASSQRLPDRHDV 283 (928)
T ss_pred -cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCC-EEEEEEEcCCCcEE
Confidence 4456678999999999998874 2 579999976 65444433 4555567889998554 7776654 3456
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
.+|.-..-+ .....-.+......|..++|++|+..|+....|. |.+|...+.... +++.+...
T Consensus 284 vFfErNGLr-----hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY-----------LKqei~~~ 346 (928)
T PF04762_consen 284 VFFERNGLR-----HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY-----------LKQEIRFS 346 (928)
T ss_pred EEEecCCcE-----eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE-----------EEEEEEcc
Confidence 667632211 1111112223456789999999999999987665 999998865432 33333322
Q ss_pred -ccceEEEEEeCC---eEEEEeCCCeEEEeeC----CCCccccCCCceeE------------------------EEecCC
Q 041325 359 -TKAILCLAVVSN---LLFSGSSDNTIRIWRR----SSSVTDHQKGYSCL------------------------AVLEGH 406 (450)
Q Consensus 359 -~~~v~~~~~~~~---~l~s~~~dg~v~iwd~----~~~~~~~~~~~~~~------------------------~~~~~h 406 (450)
...+..+.|++. .|.....+|.+..+++ ..+..........+ ..+. -
T Consensus 347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~ 425 (928)
T PF04762_consen 347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-L 425 (928)
T ss_pred CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-C
Confidence 223344777743 5555555555544332 21110000000011 1121 3
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..+|.+++|++++. .+++-..||.|.+|+.
T Consensus 426 ~~~v~~vaf~~~~~-------------~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNS-------------RFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCC-------------eEEEEECCCCEEEEEe
Confidence 46899999999988 7899999999999874
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.6e-09 Score=92.61 Aligned_cols=304 Identities=13% Similarity=0.136 Sum_probs=173.0
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEE-----EeCC-
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFS-----AHQD- 146 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s-----~~~d- 146 (450)
+++..++ +|+++|-+ .+..++|++......+.+ .....+.++.|+|-+ |.+ ...+
T Consensus 36 ~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt--------------~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~ 100 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLC--------------VELKKTYDLLFSPKGNYLLTWEPWAIYGPK 100 (566)
T ss_pred cceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEE--------------eccceeeeeeecccccccccccccccccCC
Confidence 3444444 56666655 557899999887763332 222377888888655 222 1222
Q ss_pred ----CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce---eeeecCCCceEEEEEc
Q 041325 147 ----HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK---CTWVHHVDTVSALALS 219 (450)
Q Consensus 147 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 219 (450)
-.+++|++++......... ..... .......+....+....+.+.+..... ..-.-|...|+.+.++
T Consensus 101 ~~~~pn~~v~~vet~~~~s~~q~-k~Q~~-----W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lS 174 (566)
T KOG2315|consen 101 NASNPNVLVYNVETGVQRSQIQK-KMQNG-----WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLS 174 (566)
T ss_pred CCCCCceeeeeeccceehhheeh-hhhcC-----cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEec
Confidence 3477999988432211111 10000 111111122222222333333332221 1222367789999999
Q ss_pred cCC--CEEEE-----EeCCCcEEEEecCCCeEEEEe--ecccccceEEEEEeecCCcEEEEEcC--C---------CcEE
Q 041325 220 SDG--SLLYS-----TSWDRTFKIWRTSDFRCLESV--KNAHDDAINAIVVSKSNDGFVYTGSA--D---------TKIK 279 (450)
Q Consensus 220 ~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~--d---------g~i~ 279 (450)
|.+ ..+++ .+.-+.++||.......-..+ +.-....-..+.|++-+..+|+.++. | ..++
T Consensus 175 pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY 254 (566)
T ss_pred CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence 863 33433 345568999988632221111 11122333456677655555444432 2 3677
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE--eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS--GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
++++.... ..-.+ ...++|.++.|+|+++-+++ |-.--.+.|||++- +.+ +.-
T Consensus 255 ll~t~g~s--------~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v---------------~df 309 (566)
T KOG2315|consen 255 LLATQGES--------VSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPV---------------FDF 309 (566)
T ss_pred EEEecCce--------EEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEe---------------EeC
Confidence 77765222 11122 24789999999999987665 45567899999883 222 222
Q ss_pred CccceEEEEEe--CCeEEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 358 HTKAILCLAVV--SNLLFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 358 ~~~~v~~~~~~--~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
-.++-.++-|+ +++|+.++-+ |.+.|||+.+ .+++..+..-. -+-+.|+|||+
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--------~K~i~~~~a~~--tt~~eW~PdGe------------ 367 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--------RKLIAKFKAAN--TTVFEWSPDGE------------ 367 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--------hhhccccccCC--ceEEEEcCCCc------------
Confidence 34556677777 5566666554 7899999986 36666665433 45679999999
Q ss_pred EEEEEcc------cCCcEEEEEe
Q 041325 433 FLVYSGS------LDCEIKIWQI 449 (450)
Q Consensus 433 ~~l~s~~------~Dg~i~iw~l 449 (450)
+++|+. .|+.++||+.
T Consensus 368 -~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 368 -YFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred -EEEEEeccccEEecCCeEEEEe
Confidence 777776 3788999985
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-11 Score=107.75 Aligned_cols=216 Identities=17% Similarity=0.283 Sum_probs=144.4
Q ss_pred eeEEecCCCceEEEEEeCC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
...+.||...|..++--.+ .+++++.|++|++|.++.... .+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD---------------~~--------------------- 771 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD---------------EI--------------------- 771 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC---------------cc---------------------
Confidence 3457899999999886533 399999999999999986521 00
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeec-CCcEE-EEEcC
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKS-NDGFV-YTGSA 274 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l-~~~~~ 274 (450)
-......++..|..+|.++.|-.+.++++++ ||.|++||.--++.+..... ...+.+..+...+. ...++ +.++.
T Consensus 772 ~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 772 GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSA 849 (1034)
T ss_pred ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccc
Confidence 0011233556799999999999988888765 79999999988887764432 22334444444443 23344 44478
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
..+|+++|.+..+... .+ .+..-.+.+..+.+++.-+.|+.++++-.+|.|.+.|.++|+.+. .
T Consensus 850 eSTVKl~DaRsce~~~--E~-kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN-------------s 913 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTC--EL-KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN-------------S 913 (1034)
T ss_pred hhhheeeeccccccee--eE-EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec-------------c
Confidence 8999999998766211 00 111223445678999999999999999999999999999998662 2
Q ss_pred ccCCccceEEEEE-eCCeEEEEeCCCeEEE-eeCCCC
Q 041325 355 LRGHTKAILCLAV-VSNLLFSGSSDNTIRI-WRRSSS 389 (450)
Q Consensus 355 ~~~~~~~v~~~~~-~~~~l~s~~~dg~v~i-wd~~~~ 389 (450)
+.........++- +.+.++....|.++.+ |..-.+
T Consensus 914 wrpmecdllqlaapsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 914 WRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred CCcccchhhhhcCchhHHHHhhcccceeEeeehhcCC
Confidence 2222222233332 2346666667777777 765543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-08 Score=88.15 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=126.1
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCeEEEEeCCC-eEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLFSAHQDH-KIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg-~i~iw~~~~~~~~ 160 (450)
+|++++..|. |...|.+...+-.++. +|.+.|.-..+. ++.++.|..|| .+-++|.++++..
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE
Confidence 7999999987 8888877666654444 777888887776 44599999999 8999999988421
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
.....-+.|.++..+++|+.++.+.....|.+.|+.
T Consensus 396 --------------------------------------------r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 396 --------------------------------------------RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred --------------------------------------------EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 112344579999999999999999989999999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC----cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT----KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
+++....-+ ...+-|+.+.|+|. ..+++-+--+| .|+++|+..++ ... .....+.=.+-+|.||+
T Consensus 432 ngnv~~idk-S~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~K--------iy~-vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 432 NGNVRLIDK-SEYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGK--------IYD-VTTPTAYDFSPAFDPDG 500 (668)
T ss_pred CCCeeEecc-cccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCe--------EEE-ecCCcccccCcccCCCC
Confidence 987654444 67789999999984 44788776655 68999997765 111 11122223456788999
Q ss_pred CEEEEee
Q 041325 317 TVLYSGA 323 (450)
Q Consensus 317 ~~l~~g~ 323 (450)
++|.--+
T Consensus 501 ryLYfLs 507 (668)
T COG4946 501 RYLYFLS 507 (668)
T ss_pred cEEEEEe
Confidence 9877654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-09 Score=98.26 Aligned_cols=279 Identities=9% Similarity=0.059 Sum_probs=174.9
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeec---CCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITST---DVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH 147 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 147 (450)
.....|++| ...++|.|+.||.++|-.+.+...-..... .....-...+.||.+.|.-+.|+.+. |-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456789999 589999999999999998876442211111 11112233578999999999999666 88999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 227 (450)
.|.+|-+-.+.- ...+ .-....+.|.+++|+.+|..++.
T Consensus 94 lIiVWmlykgsW----------------~EEM-------------------------iNnRnKSvV~SmsWn~dG~kIcI 132 (1189)
T KOG2041|consen 94 LIIVWMLYKGSW----------------CEEM-------------------------INNRNKSVVVSMSWNLDGTKICI 132 (1189)
T ss_pred eEEEEeeecccH----------------HHHH-------------------------hhCcCccEEEEEEEcCCCcEEEE
Confidence 999999866521 0000 00123457899999999999999
Q ss_pred EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh-cccc--chhhhhHhhcc
Q 041325 228 TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ-VNKK--HSLVQTLEKHK 304 (450)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~--~~~~~~~~~~~ 304 (450)
...||.|.+=.++..+.-..- -.......+.|+++.. .++.+-.+|.+.+||....-.. .... ......+....
T Consensus 133 vYeDGavIVGsvdGNRIwgKe--Lkg~~l~hv~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~ 209 (1189)
T KOG2041|consen 133 VYEDGAVIVGSVDGNRIWGKE--LKGQLLAHVLWSEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP 209 (1189)
T ss_pred EEccCCEEEEeeccceecchh--cchheccceeecccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC
Confidence 999999988777644322111 1122344678887444 6667778899999997543200 0000 00000111112
Q ss_pred cceEEEEEc--------CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEE
Q 041325 305 SAVTALALS--------TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFS 374 (450)
Q Consensus 305 ~~i~~l~~~--------~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s 374 (450)
..|..+.|. ||...|+++..+|.+.+..-.+.... .+....-.+....|+. ..|+.
T Consensus 210 ~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P--------------vv~dtgm~~vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 210 TKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP--------------VVVDTGMKIVGAKWNHNGAVLAV 275 (1189)
T ss_pred ccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC--------------eEEecccEeecceecCCCcEEEE
Confidence 235556654 47778999999999888754432110 1111123456677763 47777
Q ss_pred EeCC---------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 375 GSSD---------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 375 ~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
++.| +.|.+|..- ...+..++-....|++++|-..+-
T Consensus 276 cG~~~da~~~~d~n~v~Fysp~---------G~i~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 276 CGNDSDADEPTDSNKVHFYSPY---------GHIVGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred ccCcccccCccccceEEEeccc---------hhheEEEecCCceeeeeEEcCCce
Confidence 7654 345555433 256677777788899999976665
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7e-09 Score=95.86 Aligned_cols=216 Identities=14% Similarity=0.071 Sum_probs=121.3
Q ss_pred EecCCCceEEEEEeCCe--EEEEe-CCC--eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAH-QDH--KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~-~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
+..+...+....|+||+ |+..+ .++ .|.+||+.+++.. .+..
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------------~lt~------------------- 259 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------------KVTS------------------- 259 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--------------EecC-------------------
Confidence 34556688899999887 55443 333 5888888776321 1110
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEE-EeCCCc--EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYS-TSWDRT--FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+.....+|+|||+.|+. .+.+|. |.++|+.+++.. .+. .+........|+|+++.++++...
T Consensus 260 -----------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~ 326 (448)
T PRK04792 260 -----------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSER 326 (448)
T ss_pred -----------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECC
Confidence 1112345789999997765 455664 777888877643 333 344456778999976655666655
Q ss_pred CCc--EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-C--cEEEEEcCCCceeeeCCCCCCce
Q 041325 275 DTK--IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-R--SILVWERDQGNYIVDGDDDSGHM 349 (450)
Q Consensus 275 dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-g--~i~vwd~~~~~~~~~~~~~~~~~ 349 (450)
++. |.++|+.+++.. .+ .+ ........+|+|||++|+..+.+ + .|.++|+.+++...
T Consensus 327 ~g~~~Iy~~dl~~g~~~------~L-t~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--------- 388 (448)
T PRK04792 327 GGKPQIYRVNLASGKVS------RL-TF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--------- 388 (448)
T ss_pred CCCceEEEEECCCCCEE------EE-ec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE---------
Confidence 554 555566544310 11 11 12223456899999998876553 3 45667777664321
Q ss_pred eeeccccCCccceEEEEEe--CCeEE-EEeCCCe--EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 350 VLKGALRGHTKAILCLAVV--SNLLF-SGSSDNT--IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
+.... ......|+ ++.|+ +...+|. +++++... .....+..+.+.+...+|+|
T Consensus 389 -----lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G---------~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 -----LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG---------RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -----ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCC---------CceEECcCCCCCcCCCccCC
Confidence 11000 01122454 44444 4444443 66666642 33444545555667777776
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.4e-08 Score=87.47 Aligned_cols=281 Identities=13% Similarity=0.150 Sum_probs=151.4
Q ss_pred CCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
...+++.+-..++. .........++..++.++.+|.+..+|.++++......... .........++
T Consensus 81 d~~tG~~~W~~~~~--~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------~~~~~p~v~~~ 146 (377)
T TIGR03300 81 DAETGKRLWRVDLD--ERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS------------EVLSPPLVANG 146 (377)
T ss_pred EccCCcEeeeecCC--CCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc------------eeecCCEEECC
Confidence 33445554444422 22222344467888889999999999999998766522211 01111223455
Q ss_pred eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc--eeeeec-------C
Q 041325 139 KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK--KCTWVH-------H 209 (450)
Q Consensus 139 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~ 209 (450)
.++.++.+|.|..||.++++............. ..........++ .......++.+...... ...+.. .
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-~~~~~sp~~~~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALT-LRGSASPVIADG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCcee-ecCCCCCEEECC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 678888899999999998876544332211000 000000000011 11111111111111100 000000 0
Q ss_pred C--CceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 210 V--DTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 210 ~--~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
. .....+.-+| .+..++.++.+|.+..||..+++.+.... .. ....... .++.+++++.+|.+..+|..+
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--AS-SYQGPAV---DDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--cC-CccCceE---eCCEEEEECCCCeEEEEECCC
Confidence 0 0000011111 35578888889999999999998776554 11 1222233 245788888999999999987
Q ss_pred hhhhccccchhhhhHhhc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc-eE
Q 041325 286 AALQVNKKHSLVQTLEKH-KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA-IL 363 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 363 (450)
++. +...... .....+... .+..|++++.+|.|+++|..+++.+. .+..+... ..
T Consensus 299 G~~--------~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~-------------~~~~~~~~~~~ 355 (377)
T TIGR03300 299 GSE--------LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA-------------RLKTDGSGIAS 355 (377)
T ss_pred CcE--------EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE-------------EEEcCCCcccc
Confidence 761 1111111 111122222 46789999999999999999988663 22222322 23
Q ss_pred EEEEeCCeEEEEeCCCeEEEe
Q 041325 364 CLAVVSNLLFSGSSDNTIRIW 384 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg~v~iw 384 (450)
+..+.++.|+.++.||.|+.|
T Consensus 356 sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 356 PPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEECCEEEEEeCCceEEEe
Confidence 344567789999999998775
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-08 Score=94.04 Aligned_cols=178 Identities=13% Similarity=0.074 Sum_probs=107.6
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEe
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWK 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd 282 (450)
.+...+....|+|+|+.|+..+.+ ..|.+||+.+++..... ...+.+....|+|+++.++++...+| .|.+||
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 355678899999999998876643 36899999887654332 23344567899997665555666665 577888
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.+++. ..+..+........|+|||+.|+..+. +| .|+++|+.+++... . ...+.
T Consensus 274 ~~~~~~---------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----------l--t~~~~- 331 (430)
T PRK00178 274 LASRQL---------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----------V--TFVGN- 331 (430)
T ss_pred CCCCCe---------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----------e--ecCCC-
Confidence 876541 122233445567889999998876654 33 57777877665320 0 11111
Q ss_pred cceEEEEEe--CCeEEEEeC-CC--eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 360 KAILCLAVV--SNLLFSGSS-DN--TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
......|+ ++.|+..+. ++ .|.+||+.++. ... +. +........|+|+++
T Consensus 332 -~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~------~~~---lt-~~~~~~~p~~spdg~ 386 (430)
T PRK00178 332 -YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS------VRI---LT-DTSLDESPSVAPNGT 386 (430)
T ss_pred -CccceEECCCCCEEEEEEccCCceEEEEEECCCCC------EEE---cc-CCCCCCCceECCCCC
Confidence 11233454 556655543 33 47888887641 122 21 111223458999988
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.1e-07 Score=82.26 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=151.4
Q ss_pred cceEEEEE--eCCEEEEeeC----CCcEEEecCCCC--CceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe-
Q 041325 76 SYIPSLAI--AGKLLYGGSS----NGEIRAWNRDPN--NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH- 144 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~----dg~v~vw~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~- 144 (450)
.....+++ ++++|.+... +|.|..|++... ++..... ..........++++++. |+++.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~----------~~~~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS----------VPSGGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE----------EEESSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee----------eccCCCCcEEEEEecCCCEEEEEEc
Confidence 33445556 7888888766 578988887764 3332211 11133455678887666 55554
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.+|.|.++++............. .....-+.. -........++.++|++++
T Consensus 107 ~~g~v~v~~l~~~g~l~~~~~~~------~~~g~g~~~-----------------------~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 107 GGGSVSVFPLDDDGSLGEVVQTV------RHEGSGPNP-----------------------DRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp TTTEEEEEEECTTSEEEEEEEEE------ESEEEESST-----------------------TTTSSTCEEEEEE-TTSSE
T ss_pred cCCeEEEEEccCCcccceeeeec------ccCCCCCcc-----------------------cccccccceeEEECCCCCE
Confidence 58999999998742111000000 000000000 0012335788999999998
Q ss_pred EEEEe-CCCcEEEEecCCCe--E--EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc--hhhhccccchhh
Q 041325 225 LYSTS-WDRTFKIWRTSDFR--C--LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR--AALQVNKKHSLV 297 (450)
Q Consensus 225 l~~~~-~dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~ 297 (450)
+++.. ....|.+|++.... . ...+..........+.|+|++....++...++.|.++++.. +...........
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 88765 34579999997654 2 23334355667899999997776677888899999999872 221110111111
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCC--CceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQ--GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLL 372 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 372 (450)
..-.........|+++|||++|+++.. ++.|.+|++.. ++. ...............++++ +++|
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-----------~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-----------TLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-----------EEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-----------EEEEEEeCCCCCccEEEEeCCCCEE
Confidence 110111236788999999999888664 66899999942 332 1222332223335777775 5666
Q ss_pred EEEe-CCCeEEEeeCC
Q 041325 373 FSGS-SDNTIRIWRRS 387 (450)
Q Consensus 373 ~s~~-~dg~v~iwd~~ 387 (450)
+++. .++.|.+|++.
T Consensus 307 ~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 307 YVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 6655 67789999875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-08 Score=79.87 Aligned_cols=196 Identities=17% Similarity=0.101 Sum_probs=132.9
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEE---EeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLV---VLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
...+||.|+.-|...+|...+.+.... ....|...|+-+. -+.-.+..++.|.++++.+++.+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~-----------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY-----------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccEEEeccccceeeeecccCccccee-----------eecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 567999999999999999886653222 1222333222221 11222788889999999998866321
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC--ceEEEEEccCCCEEEEEeCCCcEEEEe
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD--TVSALALSSDGSLLYSTSWDRTFKIWR 238 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd 238 (450)
..-|.. .+.+++++++++++++.+....|..|.
T Consensus 152 ---------------------------------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~ 186 (344)
T KOG4532|consen 152 ---------------------------------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYA 186 (344)
T ss_pred ---------------------------------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEE
Confidence 011222 378899999999999999999999998
Q ss_pred cCCC-eEEEE-eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 239 TSDF-RCLES-VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 239 ~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
+... +.+.. ......+.-.+..|+. .+..++++..||.+.|||++.....+.. ....-..|++.+..+.|++.|
T Consensus 187 id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~---~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 187 IDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAE---ISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred eCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhh---hcccCCCCCCceEEEEecCCC
Confidence 8653 22222 2224455667778886 4447999999999999999876522111 122233488999999999855
Q ss_pred --CEEEEeeCCCcEEEEEcCCCcee
Q 041325 317 --TVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 317 --~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.+|+..-.-+.+++.|+++++..
T Consensus 263 ~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 263 LLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred cceEEEEecCcceEEEEEcccCcee
Confidence 35665556688999999987643
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-07 Score=95.91 Aligned_cols=283 Identities=13% Similarity=0.113 Sum_probs=154.9
Q ss_pred EEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCC-CCcceeEEecCCCceEEEEEeCCe--EEEEe-CCCeEEEE
Q 041325 80 SLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDV-GDHANVVATGNGDAVKSLVVLGDK--LFSAH-QDHKIRVW 152 (450)
Q Consensus 80 ~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~-~dg~i~iw 152 (450)
.+++ +++++++-+.++.|++||.............. +......-...-.....|++.++. |+.+. .++.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 4555 36677777888999999986543222211000 000000001122345778887543 55544 45779999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWD 231 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 231 (450)
|..++....+...+.... ... .+. .... ..-.....++++| ++.++++...+
T Consensus 652 d~~~~~V~tlag~G~~g~-------~~~-----------gg~------~~~~---~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 652 DFVNETVRTLAGNGTKGS-------DYQ-----------GGK------KGTS---QVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred ecCCCEEEEEeccCcccC-------CCC-----------CCh------hhhH---hhcCCCeEEEEecCCCeEEEEECCC
Confidence 987763321111110000 000 000 0000 0011235789999 56667777788
Q ss_pred CcEEEEecCCCeEEEEeec-------------ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc----
Q 041325 232 RTFKIWRTSDFRCLESVKN-------------AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH---- 294 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---- 294 (450)
+.|++||..++........ ........|+++|+++.++++-..++.|++||+.++........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999987654321110 01124567899986665777888889999999876431100000
Q ss_pred -hhhhhHh--------hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 295 -SLVQTLE--------KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 295 -~~~~~~~--------~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.....+. ..-.....++++++|+++++-..++.|++||..++..............--....+.-.....+
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 0000000 0112346899999999888888999999999987754321111000000000111222345667
Q ss_pred EEe--CCeEEEEeCCCeEEEeeCCCC
Q 041325 366 AVV--SNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 366 ~~~--~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+++ ++++++-+.++.|++||+.++
T Consensus 865 avd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 865 ALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEeCCCCEEEEECCCCEEEEEECCCC
Confidence 776 558888889999999999875
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.6e-08 Score=89.21 Aligned_cols=179 Identities=12% Similarity=0.011 Sum_probs=100.2
Q ss_pred ceEEEEEccCCCEEEEEeC-----CCcEEEEecCCC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 212 TVSALALSSDGSLLYSTSW-----DRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
.....+|+|||+.|+..+. +..+.+|++..+ .....+............|+|++..++++...+|...+|.+.
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3445789999998886653 223455777653 122233312223446789999776556666667766666442
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD---RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
... .. .....+......+....|+|||+.|+..+.+ ..|.+||+.+++.. .+......
T Consensus 312 ~~~----~g-~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--------------~Lt~~~~~ 372 (428)
T PRK01029 312 IDP----EG-QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--------------QLTTSPEN 372 (428)
T ss_pred Ccc----cc-cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--------------EccCCCCC
Confidence 110 00 0112222233456788999999988876543 46999999877643 11111223
Q ss_pred eEEEEEeC--CeEE-EEeC--CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 362 ILCLAVVS--NLLF-SGSS--DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 362 v~~~~~~~--~~l~-s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
+....|++ +.|+ ++.. ...|.++|+..+ + ...+....+.+...+|+|.
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g--------~-~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITK--------K-TRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCC--------C-EEEeecCCCcccCceecCC
Confidence 45567764 4444 3333 346888888753 1 1222223445566777764
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2e-07 Score=81.60 Aligned_cols=309 Identities=9% Similarity=0.107 Sum_probs=179.2
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC--
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH-- 147 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg-- 147 (450)
-.-++..+++ .|.+|++.... .|.+|+-.....+.. .-| ..|..+.|+|+. |.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~-------------~~~-~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVR-------------FRH-PDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheee-------------eec-CCceecccCcccceeeeeccCCcc
Confidence 4556777777 68999988774 589998766552222 123 478888888776 66654433
Q ss_pred -------------eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec------
Q 041325 148 -------------KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH------ 208 (450)
Q Consensus 148 -------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 208 (450)
.+.+||+.++..+............+ .+......+...... .++.+.+... ...+..
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~W-p~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~l 171 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGW-PVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNL 171 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCCccccc-ceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhc
Confidence 48999999996654333222211111 011111111111111 1222222221 000101
Q ss_pred CCCceEEEEEccCC--CEEEE-----EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--------
Q 041325 209 HVDTVSALALSSDG--SLLYS-----TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS-------- 273 (450)
Q Consensus 209 ~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------- 273 (450)
....+....|+|.+ ..|+. .+..+.+++|.+..+..+.... -.+..-..+.|++.++.+++-.-
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecccEEEEecCCceEEEEEEEeeecccc
Confidence 13567888899853 33443 4568899999998776665443 23333455677765554322211
Q ss_pred --CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCce
Q 041325 274 --ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHM 349 (450)
Q Consensus 274 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~ 349 (450)
....+.+++++... +.......++|...+|.|.++.+++.+ .+-.+.++|++.. ..
T Consensus 251 yfgesnLyl~~~~e~~---------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~---------- 310 (561)
T COG5354 251 YFGESNLYLLRITERS---------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR---------- 310 (561)
T ss_pred eeccceEEEEeecccc---------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eE----------
Confidence 13467888876332 222225678999999999888776654 6788999999865 11
Q ss_pred eeeccccCCccceEEEEEe--CCeEEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCC
Q 041325 350 VLKGALRGHTKAILCLAVV--SNLLFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNR 424 (450)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 424 (450)
.......-..+.|+ .++++.++-| |.+-+||.... ..+...+.+-. ..-+.|+|+++
T Consensus 311 -----~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-------f~~~~~~~~~n--~s~~~wspd~q---- 372 (561)
T COG5354 311 -----FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-------FKVAGAFNGLN--TSYCDWSPDGQ---- 372 (561)
T ss_pred -----EecCCcccccccccCcccEEEEecCCccccceEEeccCCc-------eEEEEEeecCC--ceEeeccCCce----
Confidence 11112222445555 4577776665 67999998752 45554555433 45568999998
Q ss_pred CCCCCCceEEEEEcc------cCCcEEEEEe
Q 041325 425 NSDHSSTSFLVYSGS------LDCEIKIWQI 449 (450)
Q Consensus 425 ~~~~~~~~~~l~s~~------~Dg~i~iw~l 449 (450)
++.+.- .|..|+|||+
T Consensus 373 ---------F~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 373 ---------FYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ---------EEEecCCCcccccCcceEEEEe
Confidence 555543 4888999997
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-10 Score=101.48 Aligned_cols=239 Identities=15% Similarity=0.201 Sum_probs=158.1
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.+++-+ ...-.+|++....-.. ..+.+.+|+..|+.+-|.+.. +++++.|-.+..||+++.....+
T Consensus 84 wiVsts-~qkaiiwnlA~ss~~a---------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y- 152 (1081)
T KOG0309|consen 84 WIVSTS-NQKAIIWNLAKSSSNA---------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY- 152 (1081)
T ss_pred eEEecC-cchhhhhhhhcCCccc---------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee-
Confidence 444444 4556689876543222 234688999999999998555 99999999999999998732111
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
.+..-......++|+-....+.+.+..+.|++||.+.+.
T Consensus 153 -----------------------------------------s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 153 -----------------------------------------STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS 191 (1081)
T ss_pred -----------------------------------------eeecccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence 111122345678898744445555667889999998764
Q ss_pred -EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC--CEEE
Q 041325 244 -CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG--TVLY 320 (450)
Q Consensus 244 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~ 320 (450)
++..++ .|...|+.+.|+......+.+++.||+|+.||..... .. .......+.+|..-.+.|-| .++.
T Consensus 192 ~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt----~e---~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 192 TPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST----TE---SKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred cceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccc----cc---cceeccccCcceeccccccCceeEec
Confidence 566666 6888999999986556679999999999999986543 11 11122345677777777743 3333
Q ss_pred EeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe------CC------eEEEEeCCCeEEEeeCCC
Q 041325 321 SGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV------SN------LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 321 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~------~l~s~~~dg~v~iwd~~~ 388 (450)
---.+..+.+++.++..... .......+...+.+|...|..+.|. ++ .|+|=+.|..+++|.+.+
T Consensus 264 p~~G~n~v~~~~c~n~d~e~---n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEW---NVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCeeeeeccccchhhhh---ccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 22223355555544321110 0001123557889999999877774 11 799999999999998765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-08 Score=89.73 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=78.5
Q ss_pred CCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc--EEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK--IKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vwd~ 283 (450)
+...+....|+|||+.|+..+.+ ..|.+||+.+++.... . ...+......|+|+++.++++...+|. |.++|+
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-T-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-c-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 45578889999999988876532 2588899988765332 2 223344578999977766666677775 677787
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCc
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGN 337 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~ 337 (450)
.+++ ...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++
T Consensus 294 ~tg~---------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 294 ATKA---------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCCC---------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 6554 1222233445677899999998876654 33 46667776654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-07 Score=92.67 Aligned_cols=225 Identities=11% Similarity=0.074 Sum_probs=130.0
Q ss_pred ceEEEEEccCCCEEEEEe-CCCcEEEEecCCCeEEEEeec-c---------------cccceEEEEEeecCCcEEEEEcC
Q 041325 212 TVSALALSSDGSLLYSTS-WDRTFKIWRTSDFRCLESVKN-A---------------HDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~---------------~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
....++++++++.|+++. .++.|+.+|..++.. ..+.. + .-.....++++|.++.++++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 467899999887665554 467899999877653 33210 0 01234678999866667788888
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHh------hcccceEEEEEcCCCCEE-EEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLE------KHKSAVTALALSTDGTVL-YSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
++.|++||..++............... ..-.....|+++|+++.| ++-+.++.|++||+.++...........
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 899999998765421100000000000 111345779999999855 4555678999999987653211000000
Q ss_pred ceeeecccc--------CCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCC-----ceeEEEecCCCcceEE
Q 041325 348 HMVLKGALR--------GHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKG-----YSCLAVLEGHRRPVKC 412 (450)
Q Consensus 348 ~~~~~~~~~--------~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~~~h~~~v~~ 412 (450)
.......+. ..-....+++++ ++++++-+.++.|++||..++......+ ..--....+.-.....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 000000000 001112466666 4578888889999999987641100000 0000001122235678
Q ss_pred EEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 413 LTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+++++++ ++++-+.++.|++||++
T Consensus 864 Iavd~dG~-------------lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 864 LALGENGR-------------LFVADTNNSLIRYLDLN 888 (1057)
T ss_pred EEEeCCCC-------------EEEEECCCCEEEEEECC
Confidence 99999988 89999999999999974
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-06 Score=72.30 Aligned_cols=280 Identities=10% Similarity=0.130 Sum_probs=166.5
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC---CCeEEEEEcCCC--ceeEEeccC
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ---DHKIRVWKIDNN--TSAYYSTSG 166 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iw~~~~~--~~~~~~~~~ 166 (450)
+.-|++|++++..-... ......+.+.++-|+|+++. |.++.. +|.|..|.++.. ..
T Consensus 15 s~gI~v~~ld~~~g~l~---------~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L------- 78 (346)
T COG2706 15 SQGIYVFNLDTKTGELS---------LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL------- 78 (346)
T ss_pred CCceEEEEEeCcccccc---------hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-------
Confidence 46799999874331111 11234566788999999877 777654 477888887753 21
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCC-CeE
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSD-FRC 244 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~ 244 (450)
..+.... ....+-+-+++++++++++++. ..|.|.++-++. |..
T Consensus 79 -------t~ln~~~---------------------------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 79 -------TFLNRQT---------------------------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred -------EEeeccc---------------------------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 1111110 0112337799999999988876 468899998865 332
Q ss_pred EEEee-cccccc----------eEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc
Q 041325 245 LESVK-NAHDDA----------INAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 245 ~~~~~-~~~~~~----------v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
..... ..|.+. +....+.|+++.++++.-.-..|.+|++..+++.... ...+ ......+.|.|+
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~----~~~v-~~G~GPRHi~FH 199 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD----PAEV-KPGAGPRHIVFH 199 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc----cccc-CCCCCcceEEEc
Confidence 22111 023333 8888899866534444444557999999877633221 1122 345667899999
Q ss_pred CCCCEEEEeeC-CCcEEEEEcCCCc-eeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeC-CCeEEEeeCCC
Q 041325 314 TDGTVLYSGAC-DRSILVWERDQGN-YIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSS-DNTIRIWRRSS 388 (450)
Q Consensus 314 ~~~~~l~~g~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~v~iwd~~~ 388 (450)
|++++....++ +++|.+|...... .+..+. ....+...+.+ .....+|..+ |++|.++.. ...|-+|.+..
T Consensus 200 pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ---~i~tlP~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 200 PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ---TIDTLPEDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred CCCcEEEEEeccCCEEEEEEEcCCCceEEEee---eeccCccccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999887765 8999999988631 110000 00001111111 2233444444 567666543 34688887764
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC-CcEEEEEe
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD-CEIKIWQI 449 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~i~iw~l 449 (450)
. ......+.....+...-....+.+.++ +|+++..| ..|.+|.+
T Consensus 276 ~----~g~L~~~~~~~teg~~PR~F~i~~~g~-------------~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 276 D----GGKLELVGITPTEGQFPRDFNINPSGR-------------FLIAANQKSDNITVFER 320 (346)
T ss_pred C----CCEEEEEEEeccCCcCCccceeCCCCC-------------EEEEEccCCCcEEEEEE
Confidence 3 222344455555555677888888888 77777654 45777764
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-07 Score=78.05 Aligned_cols=264 Identities=13% Similarity=0.131 Sum_probs=151.6
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeC----------CCcEEEecCCCCCceeeeecCCCCcceeEE
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSS----------NGEIRAWNRDPNNYVNITSTDVGDHANVVA 123 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 123 (450)
+.......+.+.+.++.. |..... .++-|++.|+.+.. +..|.+||..+.+.+.......... .
T Consensus 28 ~v~ViD~~~~~v~g~i~~-G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~--~-- 101 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDG-GFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR--F-- 101 (352)
T ss_pred eEEEEECCCCEEEEEEEc-cCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch--h--
Confidence 333445556777777774 333333 25568888877655 7899999999999876643321100 0
Q ss_pred ecCCCceEEEEEeCCe--EEEEe-C-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAH-Q-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
........+++++|+ |+... . +..|.+.|+.+++........ .|...++..+..+...+..+....+.
T Consensus 102 -~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-------~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 102 -LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-------DCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred -hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-------CCcEEEEecCCccEEEeecCceEEEE
Confidence 012234466777776 55544 3 789999999999665433332 12222233333333333333222211
Q ss_pred e--------cceeeeecCCCceEEE-EEcc-CCCEEEEEeCCCcEEEEecCC-----CeEEEEeecc------cccceEE
Q 041325 200 R--------HKKCTWVHHVDTVSAL-ALSS-DGSLLYSTSWDRTFKIWRTSD-----FRCLESVKNA------HDDAINA 258 (450)
Q Consensus 200 ~--------~~~~~~~~~~~~v~~~-~~~~-~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~------~~~~v~~ 258 (450)
. .....+..-..++..= .|.+ +++++..... |.|.+.|+.. .+....+... ..+...-
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 1 0000111100000000 3455 8888877776 9999999543 3333322211 2334455
Q ss_pred EEEeecCCcEEEEEc---------CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEee-CCCc
Q 041325 259 IVVSKSNDGFVYTGS---------ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGA-CDRS 327 (450)
Q Consensus 259 ~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~-~dg~ 327 (450)
++++++++.+++... ..+.|.++|..+.+ .+..+. -...+..++++||++ +|++.. .++.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--------vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--------RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--------EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCc
Confidence 999986665444332 22589999997766 444443 245789999999999 887766 5788
Q ss_pred EEEEEcCCCceeee
Q 041325 328 ILVWERDQGNYIVD 341 (450)
Q Consensus 328 i~vwd~~~~~~~~~ 341 (450)
|.++|..+++.+..
T Consensus 324 VsViD~~t~k~i~~ 337 (352)
T TIGR02658 324 LYIFDAETGKELSS 337 (352)
T ss_pred EEEEECcCCeEEee
Confidence 99999999887643
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-07 Score=84.70 Aligned_cols=271 Identities=12% Similarity=0.099 Sum_probs=154.7
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
+..++..++.++.+|.+..+|.++++......... .........++.++.+..+|.|..+|.++++..
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG------------EALSRPVVSDGLVLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC------------ceecCCEEECCEEEEECCCCEEEEEEccCCCEe
Confidence 34466777788889999999999998776533211 011111233556777888999999999988543
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
....... . .........++. .+..++.++.+|.+..+|..
T Consensus 184 W~~~~~~----------------~------------------~~~~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 184 WTVNLDV----------------P------------------SLTLRGESAPAT------AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred eeecCCC----------------C------------------cccccCCCCCEE------ECCEEEEEcCCCEEEEEEcc
Confidence 2221110 0 000000111111 12346667778899999998
Q ss_pred CCeEEEEeeccccc------ceEEEEEee-cCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc
Q 041325 241 DFRCLESVKNAHDD------AINAIVVSK-SNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 241 ~~~~~~~~~~~~~~------~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
+++.+......... ....+...| -.++.++.++.+|.+..+|..+++. .++.. + .....+..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~----~W~~~--~----~~~~~~~~- 292 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI----VWKRE--Y----GSVNDFAV- 292 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE----EEeec--C----CCccCcEE-
Confidence 88876554311110 000111111 0134677777899999999988762 11110 1 11112222
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCcccc
Q 041325 314 TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 314 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
++..++.++.+|.+..+|..+++.+..... . .+ ....+....+++|+.++.||.|.+.|..++
T Consensus 293 -~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----------~-~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG---- 355 (394)
T PRK11138 293 -DGGRIYLVDQNDRVYALDTRGGVELWSQSD----------L-LH-RLLTAPVLYNGYLVVGDSEGYLHWINREDG---- 355 (394)
T ss_pred -ECCEEEEEcCCCeEEEEECCCCcEEEcccc----------c-CC-CcccCCEEECCEEEEEeCCCEEEEEECCCC----
Confidence 466788888999999999999876642211 0 00 112233345778899999999999998876
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.+....-....+.+--... +. .|+.++.||.|+.+++
T Consensus 356 ----~~~~~~~~~~~~~~s~P~~~-~~-------------~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 356 ----RFVAQQKVDSSGFLSEPVVA-DD-------------KLLIQARDGTVYAITR 393 (394)
T ss_pred ----CEEEEEEcCCCcceeCCEEE-CC-------------EEEEEeCCceEEEEeC
Confidence 34443332222222211112 23 6888899999988764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.02 E-value=5e-07 Score=73.76 Aligned_cols=189 Identities=13% Similarity=0.185 Sum_probs=111.9
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc------ccceEEEEEeecC-----CcEEEEEcCCCcEEEE
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH------DDAINAIVVSKSN-----DGFVYTGSADTKIKVW 281 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~-----~~~l~~~~~dg~i~vw 281 (450)
=+-++|+||+.+||.+...|+|+++|+.. ..+..+...+ ...|..+.|.+.. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 46799999999999999999999999975 4444444222 3566777776533 2247777788888877
Q ss_pred eCcchhhhccccchhhhhH---hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTL---EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
-+..+.. ........+ ..+...|.++.++|.-++|++|+.... +++ ...+.
T Consensus 125 ~vs~gt~---q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~-----------------~s~a~ 178 (282)
T PF15492_consen 125 LVSVGTN---QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG-----------------MSKAS 178 (282)
T ss_pred EEEcccC---CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc-----------------ccccc
Confidence 7633210 111112222 124568999999999888888765322 000 00111
Q ss_pred ccceEEEEEe---CCeE-EEEeCCCe------EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCC
Q 041325 359 TKAILCLAVV---SNLL-FSGSSDNT------IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428 (450)
Q Consensus 359 ~~~v~~~~~~---~~~l-~s~~~dg~------v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 428 (450)
...+++-..- |.+. ++...|+. -.+|.+-+ .+...........|..|..+||+.
T Consensus 179 ~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--------~~~fs~~~~~~d~i~kmSlSPdg~-------- 242 (282)
T PF15492_consen 179 SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS--------FKFFSRQGQEQDGIFKMSLSPDGS-------- 242 (282)
T ss_pred ccCceEEEEcCCCCcEEEccccCccccccccccceeeccc--------eeeeeccccCCCceEEEEECCCCC--------
Confidence 1222222221 1111 22222221 12333222 112222233467899999999999
Q ss_pred CCceEEEEEcccCCcEEEEEe
Q 041325 429 SSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 429 ~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+||+...+|.|.+|+|
T Consensus 243 -----~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 243 -----LLACIHFSGSLSLWEI 258 (282)
T ss_pred -----EEEEEEcCCeEEEEec
Confidence 9999999999999987
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-08 Score=81.00 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=96.7
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE-EEeecccccceEEEEEeecCCcEEEEEc-----CCCcEEEEe
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGS-----ADTKIKVWK 282 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~vwd 282 (450)
|.++-.+-+.+-.++.+++++.||.+.+.+.+.-..+ ..+...|.+. .+.+... ..+++.++. .-+..+.|+
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-cccEEecCCcceEeeccceeeec
Confidence 3333333334445677999999999999988752111 1111111111 1112221 122332221 123445566
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
++..+ ...........|++++-+|. .+++++|+.||.+-+||.+.... +...+..|+.+
T Consensus 166 ~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~------------p~S~l~ahk~~ 225 (319)
T KOG4714|consen 166 LDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM------------PVSLLKAHKAE 225 (319)
T ss_pred ccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc------------hHHHHHHhhhh
Confidence 54322 11111112234899999984 55778889999999999997632 34677899999
Q ss_pred eEEEEEe---CCeEEEEeCCCeEEEeeCCC
Q 041325 362 ILCLAVV---SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 362 v~~~~~~---~~~l~s~~~dg~v~iwd~~~ 388 (450)
|..+.|+ |+.|+++++||.+..||..+
T Consensus 226 i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 226 IWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999998 45999999999999999874
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-06 Score=74.04 Aligned_cols=266 Identities=10% Similarity=0.045 Sum_probs=148.8
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE-EEe---------CCCeEEEEEcCCCceeEE
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF-SAH---------QDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~-s~~---------~dg~i~iw~~~~~~~~~~ 162 (450)
|+|.+.|..+.+.+..... +.... .+ +++|+ ++ +.+ .+..|.+||..+.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-----------G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--- 89 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-----------GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--- 89 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-----------cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---
Confidence 8999999999887665222 21111 23 66665 44 444 588999999999843
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-C-CCcEEEEecC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-W-DRTFKIWRTS 240 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~ 240 (450)
+..++...+... ........++++|||++++... . +..|.+.|+.
T Consensus 90 -------------~~~i~~p~~p~~--------------------~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 90 -------------IADIELPEGPRF--------------------LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE 136 (352)
T ss_pred -------------EeEEccCCCchh--------------------hccCccceEEECCCCCEEEEecCCCCCEEEEEECC
Confidence 333322111000 0112345788999999998776 3 7899999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh-----cccceEEEEEcC-
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK-----HKSAVTALALST- 314 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~i~~l~~~~- 314 (450)
+++.+.++.. .+...-.... +. -..+-+.||......+......... ....+.. ...+ .|.+
T Consensus 137 ~~kvv~ei~v--p~~~~vy~t~--e~-~~~~~~~Dg~~~~v~~d~~g~~~~~---~~~vf~~~~~~v~~rP----~~~~~ 204 (352)
T TIGR02658 137 GKAFVRMMDV--PDCYHIFPTA--ND-TFFMHCRDGSLAKVGYGTKGNPKIK---PTEVFHPEDEYLINHP----AYSNK 204 (352)
T ss_pred CCcEEEEEeC--CCCcEEEEec--CC-ccEEEeecCceEEEEecCCCceEEe---eeeeecCCccccccCC----ceEcC
Confidence 9999998873 2222222222 22 2223345565555443332100000 0001111 0111 4455
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc--c--cCCccceEEEEEe--CCeEEEEe----------CC
Q 041325 315 DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA--L--RGHTKAILCLAVV--SNLLFSGS----------SD 378 (450)
Q Consensus 315 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~--~~~l~s~~----------~d 378 (450)
+|+++++..+ |.|.+.|+........ ........ . .-..+...-++++ ++.++... ..
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~-----~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFL-----PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceec-----ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 8888887776 9999999754332110 00000000 0 0122233336666 44555432 22
Q ss_pred CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC-CCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD-YSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.|.++|..+. +.+..+.- ...+..+++++|++ . ++++...++.|.+.|+
T Consensus 279 ~~V~ViD~~t~--------kvi~~i~v-G~~~~~iavS~Dgkp~------------lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 279 RFLFVVDAKTG--------KRLRKIEL-GHEIDSINVSQDAKPL------------LYALSTGDKTLYIFDA 329 (352)
T ss_pred CEEEEEECCCC--------eEEEEEeC-CCceeeEEECCCCCeE------------EEEeCCCCCcEEEEEC
Confidence 57999998874 55555542 45789999999988 3 4555557888999986
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-08 Score=78.34 Aligned_cols=198 Identities=9% Similarity=-0.032 Sum_probs=123.1
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
...+|+.|+..|...+|...+.+....+-..+...|.-+.-.-+..--+..++.|.++++.++..+. .....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s--------~~~~~ 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS--------NKFAV 154 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc--------cccee
Confidence 3457999999999999999876654444323333332221111122247778888999988875443 11111
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCC
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSD 378 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d 378 (450)
....-.+.++++++|++++++.+....|..|.+...... .........+..-.+.+|+. ..+|++..|
T Consensus 155 h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey----------~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 155 HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY----------IENIYEAPTSDHGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce----------eeeeEecccCCCceeeeeccCcceEEEEecC
Confidence 111123788999999999999999999999998753211 11112222333345667764 399999999
Q ss_pred CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++.|||++....... .....-..|.+.+..+.|++-+... +|+-.-.=+.+.+-|+|
T Consensus 225 g~~~I~DVR~~~tpm~---~~sstrp~hnGa~R~c~Fsl~g~lD-----------LLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMA---EISSTRPHHNGAFRVCRFSLYGLLD-----------LLFISEHFSRVHVVDTR 282 (344)
T ss_pred CcEEEEEecccccchh---hhcccCCCCCCceEEEEecCCCcce-----------EEEEecCcceEEEEEcc
Confidence 9999999997533221 1122234589999999999865521 34333334456666654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-06 Score=85.61 Aligned_cols=209 Identities=14% Similarity=0.150 Sum_probs=126.5
Q ss_pred CCcceEEEEE--eCCEEEEeeC---C---CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEe
Q 041325 74 NSSYIPSLAI--AGKLLYGGSS---N---GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAH 144 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~---d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~ 144 (450)
+.+.-..++| ||.++|+.+. + ..+|||+.+ |.+....+. -.+--.+++|.|.+ ++++.
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~------------v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP------------VDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc------------CCCccCCccCCCCCCEEEEE
Confidence 4556778889 9999998875 3 479999977 443333111 11223467888777 44443
Q ss_pred C----CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 145 Q----DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 145 ~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
. ...|.+|.-+...- .-..+ .+......|..+.|++
T Consensus 275 q~~~~~~~VvFfErNGLrh---------------geF~l-------------------------~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 275 QRLPDRHDVVFFERNGLRH---------------GEFTL-------------------------RFDPEEEKVIELAWNS 314 (928)
T ss_pred EEcCCCcEEEEEecCCcEe---------------eeEec-------------------------CCCCCCceeeEEEECC
Confidence 3 13344444332210 00000 0112445789999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc----hhhh-----
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR----AALQ----- 289 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~----- 289 (450)
++..|+....|. |.+|-..+.. ..+.+.......+..+.|+|.....|...+.+|.+..+++.- +...
T Consensus 315 ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~ 393 (928)
T PF04762_consen 315 DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN 393 (928)
T ss_pred CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence 999999977554 9999988765 222333233444566999997776677777767776554321 1100
Q ss_pred -----------------ccccchhhhh-HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCC
Q 041325 290 -----------------VNKKHSLVQT-LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG 336 (450)
Q Consensus 290 -----------------~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~ 336 (450)
...-++++.. .-.....|..++|++++..+++-..||.|.+|.....
T Consensus 394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 0000111111 1124578999999999888999999999999996543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=85.53 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=107.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE----EEEeecccccceEEEEEeecCCcEEEEEcC---CCcEEEEeCc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC----LESVKNAHDDAINAIVVSKSNDGFVYTGSA---DTKIKVWKKL 284 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~ 284 (450)
....+..++.++++|.+..+....++++..... .... .-....+++.+..... ....+.. ...+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccc-eEEEEeecCCceeeeeeccc
Confidence 344556778899999998888877777665432 1111 1233344555554233 3333333 3444455443
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.+ ....+.+|-+.++.++++||+++|+++..|..|+|-.....- ....-.-||..-|..
T Consensus 141 ~~---------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f------------~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 141 SG---------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF------------VIESFCLGHKEFVST 199 (390)
T ss_pred cc---------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc------------chhhhccccHhheee
Confidence 22 344556899999999999999999999999999998776432 123455689999999
Q ss_pred EEEeCC-eEEEEeCCCeEEEeeCCCCcc
Q 041325 365 LAVVSN-LLFSGSSDNTIRIWRRSSSVT 391 (450)
Q Consensus 365 ~~~~~~-~l~s~~~dg~v~iwd~~~~~~ 391 (450)
++...+ .|+++|.|++|++||+.++..
T Consensus 200 isl~~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 200 ISLTDNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeccCceeeecCCCCcEEEEecccCCc
Confidence 999865 679999999999999998744
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8e-08 Score=85.01 Aligned_cols=270 Identities=12% Similarity=0.162 Sum_probs=157.1
Q ss_pred ceEEEEE--eCCEEEEe-----eCC-----CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE
Q 041325 77 YIPSLAI--AGKLLYGG-----SSN-----GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA 143 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tg-----s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~ 143 (450)
.+.++.| -|++|.|= ..+ -.+.+|+++++..... +..-...-++..|+.|. +++=
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~------------~q~k~Q~~W~~qfs~dEsl~ar 142 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQ------------IQKKMQNGWVPQFSIDESLAAR 142 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhh------------eehhhhcCcccccccchhhhhh
Confidence 5667777 46666652 112 3467998888443322 11111122688888776 4444
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc-----eEEEeecceeee-------ecCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN-----YVQVRRHKKCTW-------VHHVD 211 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------~~~~~ 211 (450)
-..+.+.+|+..+.... ...+.......+..-+.......+++.+.. .++++....... .-...
T Consensus 143 lv~nev~f~~~~~f~~~----~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka 218 (566)
T KOG2315|consen 143 LVSNEVQFYDLGSFKTI----QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA 218 (566)
T ss_pred hhcceEEEEecCCccce----eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence 44577999998874321 111112222333333443444555544432 333333221100 00111
Q ss_pred ceEEEEEccCCCE-EEEEe--C---------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcE-EEEEcCCCcE
Q 041325 212 TVSALALSSDGSL-LYSTS--W---------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF-VYTGSADTKI 278 (450)
Q Consensus 212 ~v~~~~~~~~~~~-l~~~~--~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i 278 (450)
.-..+.|++-|+- |+.++ - +.++++.+++...+...+ ...++|.++.|++++..+ ++.|..=-.+
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKV 296 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceE
Confidence 2234667775543 22222 2 346888888854555544 468999999999977666 5566677889
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
.+||++.. ++..+ ..++-+++-|+|.|++|+.++- -|.|-|||+.+.+++ ..+
T Consensus 297 tifnlr~~---------~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-------------~~~ 352 (566)
T KOG2315|consen 297 TIFNLRGK---------PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-------------AKF 352 (566)
T ss_pred EEEcCCCC---------EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc-------------ccc
Confidence 99997543 33333 4567788999999999888765 488999999987655 344
Q ss_pred cCCccceEEEEEeCCeEEEEeC------CCeEEEeeCCC
Q 041325 356 RGHTKAILCLAVVSNLLFSGSS------DNTIRIWRRSS 388 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~~l~s~~~------dg~v~iwd~~~ 388 (450)
......+...+.+|.+++|+.. |+.++||++..
T Consensus 353 ~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 353 KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 4433333333334568877764 78899999874
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.7e-08 Score=85.55 Aligned_cols=264 Identities=17% Similarity=0.174 Sum_probs=169.7
Q ss_pred CCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC-CCe
Q 041325 73 GNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ-DHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~ 148 (450)
-|.+.|+.+.. -.+++.+++.||.++.|.-..-..+... ..+..|...|.+++.+-++ +.|.+. |..
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfV---------KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs 77 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFV---------KHFRAHLGVILSLAVSYDGWLFRSVEDPDHS 77 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeeh---------hhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence 48888998888 6899999999999999975442222211 1255788888888888776 666566 999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCC-EEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGS-LLY 226 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~ 226 (450)
++++|+++-.. +..+. +..-.+.+. ...++ +.. .++
T Consensus 78 ~KvfDvEn~Dm----------------inmiK-------------------------L~~lPg~a~-wv~skGd~~s~IA 115 (558)
T KOG0882|consen 78 VKVFDVENFDM----------------INMIK-------------------------LVDLPGFAE-WVTSKGDKISLIA 115 (558)
T ss_pred eeEEEeeccch----------------hhhcc-------------------------cccCCCceE-EecCCCCeeeeEE
Confidence 99999987632 11110 000111111 11222 111 222
Q ss_pred -EEeCCCcEEEEecCCCe-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc------hhhhc-cccchhh
Q 041325 227 -STSWDRTFKIWRTSDFR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR------AALQV-NKKHSLV 297 (450)
Q Consensus 227 -~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~-~~~~~~~ 297 (450)
+.-.++.+.++|-.... ....+...|..+|..+.+++..+ .+++....|.|.-|.... .+... .+....+
T Consensus 116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL 194 (558)
T ss_pred eecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCccccccccccccchh
Confidence 33468899999976544 44445557899999999998655 788888899999999863 11000 0111123
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc-------------------eeeeccccCC
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH-------------------MVLKGALRGH 358 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 358 (450)
..+...+....++.|+|+|..+.+-..|..|+++++.+++.+..++..... +.....+..|
T Consensus 195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~ 274 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH 274 (558)
T ss_pred hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence 334445677899999999999999999999999999999876555432211 0011122333
Q ss_pred ccce-EEEEEe--CCeEEEEeCCCeEEEeeCCCC
Q 041325 359 TKAI-LCLAVV--SNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 359 ~~~v-~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 389 (450)
...+ +.+.|+ +++|+-|+.=| |++.++.++
T Consensus 275 ~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 275 GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred cCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 3332 445555 67888887766 788888764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=92.00 Aligned_cols=255 Identities=10% Similarity=0.048 Sum_probs=161.1
Q ss_pred CCCceEEEEEeCC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
......|+.|+.+ .+++||.||.+++..+.+.+....... ......+ ...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------laa~snL---------------------smN 64 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LAAASNL---------------------SMN 64 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------ccccccc---------------------chh
Confidence 3457889999843 399999999999999987742110000 0000011 122
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe-ecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
..+.+|...|.-+.|+.+.+.|-+...+|.|.+|-+-.+.-.... ....++-|.+++|+.++. .++....||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEe
Confidence 356789999999999999999999999999999998877543332 234567889999987444 566667777776655
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
++.+.. --+.+++ .....+.|++|.+.++.+-.+|.+++||....-.. .+..+ ........+......|
T Consensus 144 vdGNRI-------wgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~-c~Vn~tg~~s~~~~ki 212 (1189)
T KOG2041|consen 144 VDGNRI-------WGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFER-KLEKD-CEVNGTGIFSNFPTKI 212 (1189)
T ss_pred ecccee-------cchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHH-hhhhc-eEEeeeeeecCCCccc
Confidence 543320 0011111 12346889999999999999999999997632100 00000 0000111122222335
Q ss_pred EEEEEe--------CC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 363 LCLAVV--------SN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 363 ~~~~~~--------~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
..+.|. |+ .++.+..+|.+.+..-.+. ..++..-. .-.|....|+++|.
T Consensus 213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND-------~~Pvv~dt--gm~~vgakWnh~G~------------ 271 (1189)
T KOG2041|consen 213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND-------PEPVVVDT--GMKIVGAKWNHNGA------------ 271 (1189)
T ss_pred cceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC-------CCCeEEec--ccEeecceecCCCc------------
Confidence 566664 12 8999999999998876543 12222222 25688899999998
Q ss_pred EEEEEcccCC
Q 041325 433 FLVYSGSLDC 442 (450)
Q Consensus 433 ~~l~s~~~Dg 442 (450)
+|+.+|.|.
T Consensus 272 -vLAvcG~~~ 280 (1189)
T KOG2041|consen 272 -VLAVCGNDS 280 (1189)
T ss_pred -EEEEccCcc
Confidence 888888653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-07 Score=83.65 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=73.0
Q ss_pred eEEEEEccCCCEEEEEe-CCCcEEEEe--cCC-CeEEEEeecccccceEEEEEeecCCcEEEEEcCC--CcEEEEeCcch
Q 041325 213 VSALALSSDGSLLYSTS-WDRTFKIWR--TSD-FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--TKIKVWKKLRA 286 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~-~dg~i~iwd--~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~ 286 (450)
....+|+|||+.|+..+ .+|...+|. +.. +.....+. .....+....|+|+++.++++...+ ..|.+||+.++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 35678999999877665 466555554 432 22333443 3345667889999766455554443 36899998776
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCc
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGN 337 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~ 337 (450)
+. ..+......+....|+|||+.|+.... ...|+++|+..++
T Consensus 362 ~~---------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 362 RD---------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred Ce---------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 51 112112234577899999998875443 3568888887765
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.1e-08 Score=85.00 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=72.6
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
..+|-+.++.++++||+++++++..|..|++-....--.+..+-.+|..-|..++..+ +..|++++.|++|++||+++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence 3479999999999999999999999999999988877778888778999999999984 55699999999999999998
Q ss_pred hhh
Q 041325 286 AAL 288 (450)
Q Consensus 286 ~~~ 288 (450)
++.
T Consensus 225 gk~ 227 (390)
T KOG3914|consen 225 GKL 227 (390)
T ss_pred CCc
Confidence 873
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-06 Score=79.66 Aligned_cols=238 Identities=12% Similarity=0.146 Sum_probs=139.2
Q ss_pred EEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecC-CCc-eEEEEEeCCeEEEEeCCCeEEEEEcCCCce
Q 041325 82 AIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGN-GDA-VKSLVVLGDKLFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 82 ~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~ 159 (450)
.+.+..+++++.+|.+..+|.++++........... .. +... ... ...+...++.++.++.+|.+..+|.++++.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--~~-~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD--GW-FSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc--cc-cccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC
Confidence 346778888888999999999999977664332210 00 0000 001 122445567788899999999999998853
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
....... .. ....++ . .+..++.+..++.+..+|.
T Consensus 143 ~W~~~~~----------------~~-----------------------~~ssP~----v--~~~~v~v~~~~g~l~ald~ 177 (394)
T PRK11138 143 AWQTKVA----------------GE-----------------------ALSRPV----V--SDGLVLVHTSNGMLQALNE 177 (394)
T ss_pred cccccCC----------------Cc-----------------------eecCCE----E--ECCEEEEECCCCEEEEEEc
Confidence 2211110 00 001111 1 1345666778899999999
Q ss_pred CCCeEEEEeeccccc----ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh-hhHhh-cc-cceEEEEE
Q 041325 240 SDFRCLESVKNAHDD----AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV-QTLEK-HK-SAVTALAL 312 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~-~~-~~i~~l~~ 312 (450)
++|+.+......... ...+-... ++.++.++.+|.+..+|..+++.. +... ..-.+ +. .....+..
T Consensus 178 ~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~----W~~~~~~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 178 SDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGGDNGRVSAVLMEQGQLI----WQQRISQPTGATEIDRLVDVDT 250 (394)
T ss_pred cCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEcCCCEEEEEEccCChhh----heeccccCCCccchhcccccCC
Confidence 999988777522110 00111121 235777888899999998877621 1100 00000 00 00111111
Q ss_pred cC--CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 313 ST--DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 313 ~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+| .+..++.++.+|.+..+|..+++.+.... +. ....+...++.++.++.+|.+..+|..++
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-----------~~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-----------YG----SVNDFAVDGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-----------CC----CccCcEEECCEEEEEcCCCeEEEEECCCC
Confidence 22 34567778889999999999998664221 11 11234556788888899999999999876
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.6e-08 Score=88.46 Aligned_cols=245 Identities=15% Similarity=0.110 Sum_probs=160.5
Q ss_pred cceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----------e---E
Q 041325 76 SYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-----------K---L 140 (450)
Q Consensus 76 ~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----------~---l 140 (450)
..-.++.| .+.+||-|+. ..|.|-|..+-+.+.. +..|...|+.+.|.|. . |
T Consensus 16 sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqs------------ie~h~s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQS------------IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred ccccccccCccceEEEecC-ceEEEEehhhhhhhhc------------cccCccceeEEEeccCCCchhccCccccceeE
Confidence 33556677 5778888876 5788888887776665 5678899999999632 1 7
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
+++...|.|.+||+.... ....+..|.+++..++|-+
T Consensus 83 AsaD~~GrIil~d~~~~s-------------------------------------------~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLAS-------------------------------------------VINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred EeccccCcEEEEEehhhh-------------------------------------------hhhhhcCCCcchhheeeee
Confidence 777888999999998762 1223346788899999976
Q ss_pred ---CC-CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh-------
Q 041325 221 ---DG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ------- 289 (450)
Q Consensus 221 ---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------- 289 (450)
+. ..|++-.....|.+|+..+|+...... .......|+.+.|.+...+..-+..|.+.+-+.......
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 33 567777778899999999999988877 445667779999887777777777777776654322110
Q ss_pred -ccccchhhhhHh-------hcccc---------eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 290 -VNKKHSLVQTLE-------KHKSA---------VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 290 -~~~~~~~~~~~~-------~~~~~---------i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
..........++ .+... ...++|+|.-+.++.......+.++|++-..++. .
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~-----------v 267 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLA-----------V 267 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeE-----------E
Confidence 000000000000 00000 1235678876666666677889999998655442 1
Q ss_pred ccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 353 GALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
..+.....++..+-.++ +.|++.-.||.+.+|-.+.
T Consensus 268 vpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 268 VPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 12222222334444443 3899999999999997664
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-07 Score=86.95 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=134.2
Q ss_pred CCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 127 GDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 127 ~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
...+.|++++...|+-|..+|.|++.+..... ...
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~---------------------------------------------~~~ 73 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP---------------------------------------------KTN 73 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc---------------------------------------------ccc
Confidence 35778888888889999999999999987651 000
Q ss_pred ecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeec----CCcEEEEEcCCCcEEEEe
Q 041325 207 VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS----NDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~vwd 282 (450)
..|+.. ..+|.++++|+.||+|.|-.+.+.+....+. ...++.+++++|+ ..+.+++|+..| +.++.
T Consensus 74 ~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 74 FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence 123222 5589999999999999999998888777775 6789999999986 234699999988 77776
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
-.--. ....+ .+....++|.++.| .|++||-++.+| |+|||+.+++.+.....+..... ...--
T Consensus 145 r~wlg-----nk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R-------~e~fp 208 (846)
T KOG2066|consen 145 RNWLG-----NKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR-------PELFP 208 (846)
T ss_pred hhhhc-----Cccce-eeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCC-------cccCC
Confidence 32211 00011 34456789999999 588999998777 99999999887754444431111 11112
Q ss_pred EEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 363 LCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 363 ~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
..+.|.++..+.-|+.-+|+|..++.
T Consensus 209 phl~W~~~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 209 PHLHWQDEDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred CceEecCCCeEEEecCCeEEEEEEec
Confidence 45677765333444555788888873
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-09 Score=88.48 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=107.6
Q ss_pred EEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
+-++.+.+-.|-+-|++++. .+.+. .++.|.++.|.-.++++..|+.+|.|..+|++.+..-
T Consensus 226 yhfs~G~sqqv~L~nvetg~---------~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG-------- 287 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGH---------QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG-------- 287 (425)
T ss_pred eeecccccceeEEEEeeccc---------ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC--------
Confidence 44666777889999988765 33443 5677888899888899999999999999999975211
Q ss_pred ceeeeccccCCccceEEEE---EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCC
Q 041325 348 HMVLKGALRGHTKAILCLA---VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNR 424 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 424 (450)
.. .......|...|+++. |++++|++.+.+|.|++||.+.- +..+-+..+.||...-.-+-++-+.+
T Consensus 288 ~~-~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-----K~~~~V~qYeGHvN~~a~l~~~v~~e---- 357 (425)
T KOG2695|consen 288 NG-WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-----KCKKSVMQYEGHVNLSAYLPAHVKEE---- 357 (425)
T ss_pred CC-cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-----hcccceeeeecccccccccccccccc----
Confidence 11 1123345788888765 45779999999999999999862 22234888999976554444443322
Q ss_pred CCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 425 NSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 425 ~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+..++++|+|...|||.++
T Consensus 358 -------eg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 358 -------EGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred -------cceEEEccCeeEEEEEecc
Confidence 2278889999999999875
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.1e-09 Score=99.78 Aligned_cols=245 Identities=13% Similarity=0.130 Sum_probs=164.4
Q ss_pred CCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee
Q 041325 15 KEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS 92 (450)
Q Consensus 15 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs 92 (450)
+-.+..|.+.....+--|-+.+.....--.+.-.+.+..+........++..++|+ .|....+|++| +.+.|+.|+
T Consensus 1043 f~pH~CPEpk~~~~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~fr--d~~~~fTc~afs~~~~hL~vG~ 1120 (1516)
T KOG1832|consen 1043 FHPHVCPEPKRLLEAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFR--DETALFTCIAFSGGTNHLAVGS 1120 (1516)
T ss_pred cCCccCCChHHHhhcchhhhhcccchhhcCcccccccCcccchhhHhhcccchhhh--ccccceeeEEeecCCceEEeee
Confidence 33444566555555444444443322222233444555666666777788889998 99999999999 689999999
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCC-eEEEEEcCCCceeEEeccCcc
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDH-KIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~ 168 (450)
..|.|+++++.+|..... ...|..+|+-+.-+-++ |.+++... ...+|++.+--.
T Consensus 1121 ~~Geik~~nv~sG~~e~s------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~--------- 1179 (1516)
T KOG1832|consen 1121 HAGEIKIFNVSSGSMEES------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG--------- 1179 (1516)
T ss_pred ccceEEEEEccCcccccc------------ccccccccccccccCCcceeeeeccccCchHHHhccccccC---------
Confidence 999999999999885554 56899999999988665 44444433 577898865310
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
.. +.-..-.++.|+.....-+.|+......+||++++..+.++
T Consensus 1180 ------~~-------------------------------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1180 ------PR-------------------------------HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ------cc-------------------------------ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 00 11124567778775555556666678999999998877664
Q ss_pred ec---ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 249 KN---AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 249 ~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
.. .....-++..|+|.+. +++ .|| .+||++..+ .++.|......+ .-.|+|+|..++.-++
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~--------aIh~FD~ft~~~-~G~FHP~g~eVIINSE- 1286 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIPE--------AIHRFDQFTDYG-GGGFHPSGNEVIINSE- 1286 (1516)
T ss_pred cCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccHH--------HHhhhhhheecc-cccccCCCceEEeech-
Confidence 31 1222337788998554 443 455 489997665 677776554322 3469999999988764
Q ss_pred CcEEEEEcCCCcee
Q 041325 326 RSILVWERDQGNYI 339 (450)
Q Consensus 326 g~i~vwd~~~~~~~ 339 (450)
|||+++-+.+
T Consensus 1287 ----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1287 ----IWDMRTFKLL 1296 (1516)
T ss_pred ----hhhhHHHHHH
Confidence 8999986654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-05 Score=68.09 Aligned_cols=217 Identities=16% Similarity=0.132 Sum_probs=134.4
Q ss_pred EEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe-EEEEeCCCeEEEEEc
Q 041325 80 SLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK-LFSAHQDHKIRVWKI 154 (450)
Q Consensus 80 ~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~~dg~i~iw~~ 154 (450)
+..| ++.++++--..+.|..|+..++..... ... ....+++. ++. ++.+..++ +.++|.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------~~~-~~~G~~~~~~~g~l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------DLP-GPNGMAFDRPDGRLYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------ESS-SEEEEEEECTTSEEEEEETTC-EEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------ecC-CCceEEEEccCCEEEEEEcCc-eEEEec
Confidence 3456 366677777789999999888764332 111 26667776 455 77776655 555588
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC---
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD--- 231 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 231 (450)
.+++... +...+... ......+.+++.++|++.++....
T Consensus 68 ~~g~~~~--------------~~~~~~~~------------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~ 109 (246)
T PF08450_consen 68 DTGKVTV--------------LADLPDGG------------------------VPFNRPNDVAVDPDGNLYVTDSGGGGA 109 (246)
T ss_dssp TTTEEEE--------------EEEEETTC------------------------SCTEEEEEEEE-TTS-EEEEEECCBCT
T ss_pred CCCcEEE--------------EeeccCCC------------------------cccCCCceEEEcCCCCEEEEecCCCcc
Confidence 8774311 11110000 023367899999999977776543
Q ss_pred -----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 232 -----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 232 -----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
|.|..++.. ++...... .....+.|+|+|+++.++++-+..+.|..+++....... ........+....+.
T Consensus 110 ~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 185 (246)
T PF08450_consen 110 SGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL-SNRRVFIDFPGGPGY 185 (246)
T ss_dssp TCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE-EEEEEEEE-SSSSCE
T ss_pred ccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeecccccceeEEEeccccccce-eeeeeEEEcCCCCcC
Confidence 557777777 55444433 456679999999776567788889999999986433100 001112222222235
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
.-.+++..+|++.++....+.|.+++.. ++.+ ..+......+++++|.
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~-------------~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL-------------REIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE-------------EEEE-SSSSEEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE-------------EEEcCCCCCEEEEEEE
Confidence 7889999999988888889999999988 6644 2222223478899996
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.5e-09 Score=59.03 Aligned_cols=38 Identities=26% Similarity=0.650 Sum_probs=36.3
Q ss_pred eeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+++..+.+|.+.|++|+|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-------------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-------------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-------------EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-------------cceeeCCCCEEEEEC
Confidence 67889999999999999999999 999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.8e-08 Score=91.35 Aligned_cols=187 Identities=13% Similarity=0.189 Sum_probs=136.4
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
++..++-|+....+...|+.+.+..+. ..-....|.-++.++..+.+|...|+|.+-|.++.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~------------~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~----- 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT------------TNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE----- 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee------------eeccCCceEEEEecCcEEEeecccceEEeecCCcCc-----
Confidence 355666777777777778777765554 112223478888888889999999999999998872
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC---------CCcE
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW---------DRTF 234 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i 234 (450)
....+..|++.|.++.. .|++|++++. |..|
T Consensus 209 --------------------------------------~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~Fv 248 (1118)
T KOG1275|consen 209 --------------------------------------TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFV 248 (1118)
T ss_pred --------------------------------------eeeeeeccccceeeeec--cCCeEEEeecccccccccccchh
Confidence 23345579888877655 5888998875 5678
Q ss_pred EEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 235 KIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
++||++..+.+..+. -+ ....-+.|+|.-...+++++..|...+-|..+-. ....-+..+....+.+..+.+++
T Consensus 249 kVYDLRmmral~PI~-~~-~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls----NP~~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 249 KVYDLRMMRALSPIQ-FP-YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS----NPPAGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred hhhhhhhhhccCCcc-cc-cCchhhhhcccccceEEEEecccceeeccccccC----CCccceeEEccCCCcceeEEecC
Confidence 999999988877775 23 3336778898878789999999999999843211 11112222333445699999999
Q ss_pred CCCEEEEeeCCCcEEEEEc
Q 041325 315 DGTVLYSGACDRSILVWER 333 (450)
Q Consensus 315 ~~~~l~~g~~dg~i~vwd~ 333 (450)
+++.++.|..+|.|.+|.-
T Consensus 323 n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 323 NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCceEEEecccCcEeeecC
Confidence 9999999999999999983
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=84.54 Aligned_cols=124 Identities=15% Similarity=0.249 Sum_probs=97.5
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC-----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF-----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
..+.|.++.|...++++..|+.+|.|..+|++.+ .+...+. |...|+++......+.+|++.+.+|.|++||.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 4456888889988999999999999999999864 4555554 89999999888756778999999999999999
Q ss_pred cchhhhccccchhhhhHhhcccceEEE--EEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTAL--ALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
+.-++. .-+..+.+|-..-.-+ ...+....+++++.|-..+||.++.+..+
T Consensus 329 R~~K~~-----~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 329 RATKCK-----KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhcc-----cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 876621 1366666775443333 34456678899999999999999988766
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.4e-08 Score=78.67 Aligned_cols=230 Identities=15% Similarity=0.214 Sum_probs=127.9
Q ss_pred CCCceEEEEEeCC--eEEEEeCCCeEEEEEcCCCcee-E-EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 126 NGDAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSA-Y-YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 126 h~~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
....|+++.|... +|++|...|.|.++.-+..... + +..+-+.....+..+..+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl---------------------- 82 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL---------------------- 82 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc----------------------
Confidence 3457899999754 4888888899999976654210 0 000000000000111111
Q ss_pred ceeeeecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCCCe------------------------------------
Q 041325 202 KKCTWVHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFR------------------------------------ 243 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~------------------------------------ 243 (450)
.-...|..+.|..++ ..++..+.|.+|++|.+....
T Consensus 83 ------eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd 156 (460)
T COG5170 83 ------EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD 156 (460)
T ss_pred ------cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc
Confidence 122357778886643 456777789999999875420
Q ss_pred ------EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-C
Q 041325 244 ------CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-G 316 (450)
Q Consensus 244 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~ 316 (450)
+.+.....|..-++++.++. +...+....|-.|.+|++.-.......-......+.....-|++..|+|. .
T Consensus 157 ~iiaa~p~rvyaNaH~yhiNSiS~Ns--D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c 234 (460)
T COG5170 157 EIIAAKPCRVYANAHPYHINSISFNS--DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC 234 (460)
T ss_pred eEEEeccceeccccceeEeeeeeecC--chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc
Confidence 00111135667788888885 33344455677899998765331111101111223333456888999994 4
Q ss_pred CEEEEeeCCCcEEEEEcCCCcee------eeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 317 TVLYSGACDRSILVWERDQGNYI------VDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
+.+.-.+..|.|++-|++..... .+...+. .-..-+.+-...|..+.|+++ ++++-+ =-+|++||++.
T Consensus 235 n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~---v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm 310 (460)
T COG5170 235 NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDG---VDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNM 310 (460)
T ss_pred ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCc---ccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccc
Confidence 56667778999999999854321 0000000 001112223356777888744 666544 35799999986
Q ss_pred C
Q 041325 389 S 389 (450)
Q Consensus 389 ~ 389 (450)
.
T Consensus 311 ~ 311 (460)
T COG5170 311 A 311 (460)
T ss_pred c
Confidence 4
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.6e-06 Score=70.81 Aligned_cols=222 Identities=14% Similarity=0.156 Sum_probs=128.0
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE-eCCeEEEEeCCCeEEEEEcCCCceeEEeccCccccc
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV-LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK 171 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 171 (450)
.+|+|..||..+++.+....... ... ...+... .++.+++++.++.|..||..+++........
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~---------~~~-~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~----- 65 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP---------GIG-GPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP----- 65 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS---------SCS-SEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-----
T ss_pred CCCEEEEEECCCCCEEEEEECCC---------CCC-CccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-----
Confidence 36899999999998777633211 122 2222233 5666888899999999999988432211110
Q ss_pred ceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 172 YYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
+.+.... ..++..++.++.++.|..+|..+|+.+......
T Consensus 66 ---------------------------------------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 66 ---------------------------------------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ---------------------------------------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred ---------------------------------------cccccee-eecccccccccceeeeEecccCCcceeeeeccc
Confidence 0000001 123556677778889999999999998884212
Q ss_pred cc-----cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh---cccceEEEEEcCCCCEEEEee
Q 041325 252 HD-----DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 252 ~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.. .......+. ++.++.+..++.|..+|+++++..-....... .... ....+..-....++ .++.++
T Consensus 106 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 180 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSPVISDG-RVYVSS 180 (238)
T ss_dssp SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEEC
T ss_pred cccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCC-CCCcceeeecccccceEEECC-EEEEEc
Confidence 11 112223332 44777888899999999988872111100000 0000 00111222222244 777777
Q ss_pred CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE-EEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 324 CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC-LAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 324 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
.++.+..+|+.+++.+. ... ...+.. ....++.|+.++.++.|..||++++
T Consensus 181 ~~g~~~~~d~~tg~~~w-------------~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 181 GDGRVVAVDLATGEKLW-------------SKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp CTSSEEEEETTTTEEEE-------------EEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred CCCeEEEEECCCCCEEE-------------Eec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 78864444999887441 111 111333 4556778888889999999999986
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-08 Score=57.59 Aligned_cols=37 Identities=46% Similarity=0.832 Sum_probs=34.6
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEec
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWN 101 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~ 101 (450)
++++++++ +|.+.|++|+| ++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46888999 99999999999 789999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-05 Score=64.17 Aligned_cols=266 Identities=16% Similarity=0.197 Sum_probs=152.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCC---CcEEEecCCC--CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSN---GEIRAWNRDP--NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~d---g~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
.+.+..+-|++ +++.|.++-.+ |.|-.+.++. +.+....... ..++ +-..+++++++ ++++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--------~~g~--~p~yvsvd~~g~~vf~A 106 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--------LPGS--PPCYVSVDEDGRFVFVA 106 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--------cCCC--CCeEEEECCCCCEEEEE
Confidence 45666777788 57788887554 6777776654 5544442221 1122 33677777666 5555
Q ss_pred eC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 144 HQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 144 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
.. -|.|.++.++..-... ..+..+..... . ........-+....+.|++
T Consensus 107 nY~~g~v~v~p~~~dG~l~------------~~v~~~~h~g~-----------------~-p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 107 NYHSGSVSVYPLQADGSLQ------------PVVQVVKHTGS-----------------G-PHERQESPHVHSANFTPDG 156 (346)
T ss_pred EccCceEEEEEcccCCccc------------cceeeeecCCC-----------------C-CCccccCCccceeeeCCCC
Confidence 44 5889999986641100 00000000000 0 0000011127788999999
Q ss_pred CEEEEEeC-CCcEEEEecCCCeEEEEe--ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 223 SLLYSTSW-DRTFKIWRTSDFRCLESV--KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 223 ~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+++++... --.|.+|++.+++....- ..........|.|+|+.+-..++.--+++|.+|........ ....+.+..
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~-~~~lQ~i~t 235 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK-FEELQTIDT 235 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce-EEEeeeecc
Confidence 99988763 347999999987643322 11345667999999966644666777999999998764200 011111111
Q ss_pred Hh---hcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE--eCCeEE
Q 041325 300 LE---KHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLF 373 (450)
Q Consensus 300 ~~---~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 373 (450)
+. ........|..++||++|.++.. ...|.+|.+.... +..........+...-..+.+ ++++|+
T Consensus 236 lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~---------g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 236 LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG---------GKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC---------CEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 11 13456788999999999998754 2367777765321 112222222223332344444 467777
Q ss_pred EEeCC-CeEEEeeCCC
Q 041325 374 SGSSD-NTIRIWRRSS 388 (450)
Q Consensus 374 s~~~d-g~v~iwd~~~ 388 (450)
++..+ ..|.+|.+..
T Consensus 307 aa~q~sd~i~vf~~d~ 322 (346)
T COG2706 307 AANQKSDNITVFERDK 322 (346)
T ss_pred EEccCCCcEEEEEEcC
Confidence 77665 5688888764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.3e-06 Score=71.67 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh-hhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL-VQT 299 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~ 299 (450)
++..+++++.++.|..||..+|+.+..+.. ...+...... .++.++++..++.++.+|..+++. .+.. ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~----~W~~~~~~ 106 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKV----LWSIYLTS 106 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCE----EEEEEE-S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee--cccccccccceeeeEecccCCcce----eeeecccc
Confidence 466777778999999999999999888773 2221111122 344667777888999999888872 2211 111
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDN 379 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 379 (450)
..... .........+++.++++..++.|..+|.++|+.+........... ..+.........+.+.++.++.++.++
T Consensus 107 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 107 SPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS--SPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp SCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS----EEEETTEEEEEECCTTEEEEECCTS
T ss_pred ccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC--cceeeecccccceEEECCEEEEEcCCC
Confidence 01111 112222222478888898899999999999987743222110000 000000011133334455777788788
Q ss_pred e-EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 380 T-IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 380 ~-v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
. +.+ |+.++ +.+.... ...+..+ ...++. .|+.++.|+.|..||++
T Consensus 184 ~~~~~-d~~tg--------~~~w~~~--~~~~~~~-~~~~~~-------------~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 184 RVVAV-DLATG--------EKLWSKP--ISGIYSL-PSVDGG-------------TLYVTSSDGRLYALDLK 230 (238)
T ss_dssp SEEEE-ETTTT--------EEEEEEC--SS-ECEC-EECCCT-------------EEEEEETTTEEEEEETT
T ss_pred eEEEE-ECCCC--------CEEEEec--CCCccCC-ceeeCC-------------EEEEEeCCCEEEEEECC
Confidence 5 555 98875 2222222 1222221 334455 67777799999999974
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-06 Score=69.66 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=112.1
Q ss_pred eEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--------EEEEeCCC
Q 041325 78 IPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--------LFSAHQDH 147 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------l~s~~~dg 147 (450)
=+.++| |+.+||.+...|+|+++|+....+-.+...... ...-..+|..+.|.+.. |+.-..+|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG 119 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc------CCccccceeeeEeeccccccccceeEEEEeccc
Confidence 345667 899999999999999999987654433221110 11224567777775322 77777788
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-ecCCCceEEEEEccCCCEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-VHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~ 226 (450)
.++-|-+..++...+ ... ....+ ..+...|.++.++|..++|+
T Consensus 120 ~L~Sy~vs~gt~q~y-----------~e~-------------------------hsfsf~~~yp~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 120 QLRSYLVSVGTNQGY-----------QEN-------------------------HSFSFSSHYPHGINSAVYHPKHRLLL 163 (282)
T ss_pred eeeeEEEEcccCCcc-----------eee-------------------------EEEEecccCCCceeEEEEcCCCCEEE
Confidence 888777643311000 000 01111 13577899999999988888
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcE-EEEEcCCCc------EEEEeCcchhhhccccchhhhh
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF-VYTGSADTK------IKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~------i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+|+.... +++. -. .....+++-........+ .++...|+. ..+|.+-+.+ ....
T Consensus 164 VgG~~~~------~~~~----s~-a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~--------~fs~ 224 (282)
T PF15492_consen 164 VGGCEQN------QDGM----SK-ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK--------FFSR 224 (282)
T ss_pred EeccCCC------CCcc----cc-ccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee--------eeec
Confidence 7764322 0000 00 112222222222111111 122222211 1222221111 1111
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.......|..|..+|||+.|++.+.+|.|.+|++.+-+..
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 1234678999999999999999999999999999876544
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-07 Score=86.10 Aligned_cols=183 Identities=9% Similarity=0.141 Sum_probs=130.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
++..++-|+....+..+|+++.+..+... -....|.-++. ++..+.+|...|+|.+-|.++.+ .+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~--------~iht~ 213 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFE--------TIHTF 213 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee-ccCCceEEEEe---cCcEEEeecccceEEeecCCcCc--------eeeee
Confidence 45567788888889999999887766654 22334555555 45589999999999999997665 88999
Q ss_pred hhcccceEEEEEcCCCCEEEEeeC---------CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--
Q 041325 301 EKHKSAVTALALSTDGTVLYSGAC---------DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-- 369 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 369 (450)
..|.+.|..+.. .|++|++++. |.-|+|||++..+.+. .+.-+.++ .-+.|.|
T Consensus 214 ~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-------------PI~~~~~P-~flrf~Psl 277 (1118)
T KOG1275|consen 214 DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-------------PIQFPYGP-QFLRFHPSL 277 (1118)
T ss_pred eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC-------------CcccccCc-hhhhhcccc
Confidence 999999987666 6889998875 5668999999876551 22222222 2233443
Q ss_pred -CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 370 -NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 370 -~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
..++.++..|...+-|..+- ..+...+.....-...+..+.++++++ .|+-|..+|.|.+|.
T Consensus 278 ~t~~~V~S~sGq~q~vd~~~l----sNP~~~~~~v~p~~s~i~~fDiSsn~~-------------alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 278 TTRLAVTSQSGQFQFVDTATL----SNPPAGVKMVNPNGSGISAFDISSNGD-------------ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceEEEEecccceeecccccc----CCCccceeEEccCCCcceeEEecCCCc-------------eEEEecccCcEeeec
Confidence 47888999999999884431 111122233333345599999999999 999999999999994
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-05 Score=73.01 Aligned_cols=157 Identities=13% Similarity=0.175 Sum_probs=101.1
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEc
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKI 154 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~ 154 (450)
..+|++..+++++.|+.-|.+++++...++...... .+-.+.+..+..+++. ++.|+..|.|.++.+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-----------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-----------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccc-----------cCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 466777789999999999999999988877554411 1222344444555443 778888899999988
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
+..... ....+. ... ..|...|++++|++++..+++|...|+|
T Consensus 106 ~~~~p~--------------~~~~~t-------------------~~d----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 106 NKELPR--------------DLDYVT-------------------PCD----KSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred hccCCC--------------cceeec-------------------ccc----ccCCceEEEEEecccccEEeecCCCceE
Confidence 765210 000000 000 1278899999999999999999999999
Q ss_pred EEEecCCC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 235 KIWRTSDF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 235 ~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+-.+... -..+.+. ...+.|..+... .. +|++++.-. -.+++.+.+
T Consensus 149 ~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~--q~-~LLVStl~r-~~Lc~tE~e 199 (726)
T KOG3621|consen 149 VLTELDSRQAFLSKSQEIL-SEDSEIVQLDYL--QS-YLLVSTLTR-CILCQTEAE 199 (726)
T ss_pred EEEEechhhhhccccceee-ccCcceEEeecc--cc-eehHhhhhh-hheeecchh
Confidence 99888762 1112222 355677777776 34 444443333 345555443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.5e-05 Score=69.67 Aligned_cols=306 Identities=11% Similarity=0.102 Sum_probs=164.2
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC-----------CCeEE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ-----------DHKIR 150 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-----------dg~i~ 150 (450)
-|.||+|--..| |.+|--.+-..... ..|. .|.-+.|+|.. |+|-+. ...++
T Consensus 221 ~GTYL~t~Hk~G-I~lWGG~~f~r~~R-------------F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 221 KGTYLVTFHKQG-IALWGGESFDRIQR-------------FYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred CceEEEEEeccc-eeeecCccHHHHHh-------------ccCC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 477888877655 77886444332221 2343 78888898776 776542 25799
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec----CCCceEEEEEccCCCEEE
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH----HVDTVSALALSSDGSLLY 226 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~ 226 (450)
|||+.++........-..+... -.+..-+ .++.+.+.... +.+.+...+...+.. ....|....|+|.+++||
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~-WP~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLK-WPIFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEccccchhcceeccCCCccc-cceEEec-cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 9999999553322221110000 0111111 22333333333 344444444333322 234688889999988776
Q ss_pred EEeC-----CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEE----------EcCCCcEEEEeCcchhhhcc
Q 041325 227 STSW-----DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT----------GSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 227 ~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----------~~~dg~i~vwd~~~~~~~~~ 291 (450)
-=.. -.++.+..+.+++.++.-. -+.-.=..+-|..+++ +|+. .+.-..+-|+.++...
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~gd-yLcvkvdR~tK~~~~g~f~n~eIfrireKd---- 436 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKSGD-YLCVKVDRHTKSKVKGQFSNLEIFRIREKD---- 436 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccCCc-EEEEEEEeeccccccceEeeEEEEEeeccC----
Confidence 4321 2346666777666665543 2221112233333222 2221 1122245566665443
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
.++... .....|...+|-|.|+.+++-+. ..++.+|.+++.. ....+...+.. ...+.+.|+
T Consensus 437 ---Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~---------~~~~lVk~~dk--~~~N~vfws 501 (698)
T KOG2314|consen 437 ---IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI---------KKPSLVKELDK--KFANTVFWS 501 (698)
T ss_pred ---CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC---------Cchhhhhhhcc--cccceEEEc
Confidence 122222 34577888999999998877554 3568888877421 11122233322 344667777
Q ss_pred C--CeEEE---EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc---
Q 041325 369 S--NLLFS---GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL--- 440 (450)
Q Consensus 369 ~--~~l~s---~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~--- 440 (450)
| .+++. +|..|.+.++|.... .+...-.......+.+.|.|.|+ |++|++.
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a--------~~k~~~~~eh~~at~veWDPtGR-------------YvvT~ss~wr 560 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYA--------DLKDTASPEHFAATEVEWDPTGR-------------YVVTSSSSWR 560 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchh--------hhhhccCccccccccceECCCCC-------------EEEEeeehhh
Confidence 4 44443 345788999998731 11111111223467899999999 8888874
Q ss_pred ---CCcEEEEEe
Q 041325 441 ---DCEIKIWQI 449 (450)
Q Consensus 441 ---Dg~i~iw~l 449 (450)
|.--+||++
T Consensus 561 hk~d~GYri~tf 572 (698)
T KOG2314|consen 561 HKVDNGYRIFTF 572 (698)
T ss_pred hccccceEEEEe
Confidence 444566665
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.5e-06 Score=71.18 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=94.9
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCC-cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDR-TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++..... ..-+.|.++..++++. +++++.....+.++|+.++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--~~lg~I~av~vs~dGK-~~vvaNdr~el~vididng 433 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--KDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNG 433 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--CCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCC
Confidence 4666788777877888899999999 8999999987754443 4678999999998444 7888888899999999887
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC----cEEEEEcCCCcee
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR----SILVWERDQGNYI 339 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg----~i~vwd~~~~~~~ 339 (450)
. ....-+...+-|+...|+|++++||-+--+| .|+++|+..++..
T Consensus 434 n--------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 434 N--------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred C--------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 6 2222223457799999999999999887665 6899999887653
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00014 Score=58.93 Aligned_cols=140 Identities=18% Similarity=0.259 Sum_probs=89.7
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE-eCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV-LGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
..+++.|+..|.+..-|..+++...... -...|.+-+. .+|.++.|+..|.+++.+..++....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w-- 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-------------LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIW-- 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-------------hCceeeeeeEEECCEEEEEEccCcEEEEEecchhhee--
Confidence 5778888888999988998888766511 1123332222 47789999999999999999983211
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE-EEEEccCCCEEEEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS-ALALSSDGSLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 242 (450)
.+. -.+.|. .....+++.++..|+.|+.....|.++.
T Consensus 88 --------------~f~----------------------------~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 88 --------------NFV----------------------------ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred --------------eee----------------------------ehhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 110 000121 2335678999999999999999999999
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.++...+- ..+--.+-+..+ .++.|..+...|.+.--..
T Consensus 126 ~cVykskc-gG~~f~sP~i~~-g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 126 GCVYKSKC-GGGTFVSPVIAP-GDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred ceEEeccc-CCceeccceecC-CCceEEEEeccceEEEEcc
Confidence 88887662 222222233444 3445555555565554443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-06 Score=76.20 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=143.4
Q ss_pred cCCCceEEEEEe-CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 125 GNGDAVKSLVVL-GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 125 ~h~~~v~~l~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
.|.+.|+.+... .+.+++++.||.++.|.-..-... + -.
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGv-------------E---------------------------fV 46 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGV-------------E---------------------------FV 46 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccce-------------e---------------------------eh
Confidence 577778777766 455999999999999986542110 1 11
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeC-CCcEEEEecCCCeEEEEeecccccceEEEEEeecCC----cEEEEEcCCCcE
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSW-DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND----GFVYTGSADTKI 278 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i 278 (450)
..+..|...+.+++.+-++.++.+.+. |..++++|+++...+.-++. ......+.|....+ .+.++...+|.+
T Consensus 47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i 124 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL--VDLPGFAEWVTSKGDKISLIAVSLFKSGKI 124 (558)
T ss_pred hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc--ccCCCceEEecCCCCeeeeEEeecccCCCc
Confidence 122357778899999999999999887 99999999998776654441 12222233332122 123444567899
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC-Cceee-eCCCCCCceeeecccc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ-GNYIV-DGDDDSGHMVLKGALR 356 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~-~~~~~~~~~~~~~~~~ 356 (450)
.++|-....+ +....-.-|..+|..+.+++-+..+++....|.|.-|.... -+... ...-+.........+.
T Consensus 125 ~VvD~~~d~~------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 125 FVVDGFGDFC------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP 198 (558)
T ss_pred EEECCcCCcC------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence 9999755432 23334455889999999999999999999999999999873 11000 0000001111112233
Q ss_pred CCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCc
Q 041325 357 GHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 357 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
.......++.++ +..+.+-+.|..|+++++.++.
T Consensus 199 K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 199 KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 344556777777 5588888999999999998864
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-06 Score=78.75 Aligned_cols=190 Identities=14% Similarity=0.149 Sum_probs=122.0
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
...++|+++.+++|+-|+.+|.|++.+.+..... ...|... ...+.++++|+.||+|.|-.+
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~--------------~~~~s~~----~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKT--------------NFDHSSS----ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcccc--------------ccccccc----ccCCceEEEecCCCcEEEeec
Confidence 5678889999999999999999999987654311 1133222 233556999999999999988
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-----CCEEEEEe
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-----GSLLYSTS 229 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~ 229 (450)
-+.+. .... ....++.+++++|+ .+.+++|+
T Consensus 101 ~~~~~----------------~~~~----------------------------df~rpiksial~Pd~~~~~sk~fv~GG 136 (846)
T KOG2066|consen 101 FTDDE----------------ITQY----------------------------DFKRPIKSIALHPDFSRQQSKQFVSGG 136 (846)
T ss_pred cCCcc----------------ceeE----------------------------ecCCcceeEEeccchhhhhhhheeecC
Confidence 77632 1111 23447899999997 56799999
Q ss_pred CCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 230 WDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 230 ~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
..| +.++.-+=. ...........++|.++.|. +++++=+..+| |++||+..++....-.+.. ... ....-..
T Consensus 137 ~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~-~~~-R~e~fpp 209 (846)
T KOG2066|consen 137 MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS-QSV-RPELFPP 209 (846)
T ss_pred cce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCC-CCC-CcccCCC
Confidence 888 777653211 11111222677999999997 44666666665 9999987765221111111 111 1122235
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
.+.|.++. .|+.|= .-+|+|..++.
T Consensus 210 hl~W~~~~-~LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 210 HLHWQDED-RLVIGW-GDSVKICSIKK 234 (846)
T ss_pred ceEecCCC-eEEEec-CCeEEEEEEec
Confidence 67888654 455554 44688888873
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.3e-06 Score=71.35 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=70.6
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
.+.....+....+.+. +|...|..++| +..++..++.+..|+|.|+++...+.. +..| ..++
T Consensus 175 v~~l~~~~fkssq~lp--~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss------------y~a~-~~~w 239 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP--GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS------------YIAY-NQIW 239 (463)
T ss_pred eEEeccCCcchhhccc--ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh------------eecc-CCce
Confidence 4444455555566555 99999999999 345788999999999999999876665 4556 6999
Q ss_pred EEEEeCCe---EEEEeCCCeEEEEEcCCCc
Q 041325 132 SLVVLGDK---LFSAHQDHKIRVWKIDNNT 158 (450)
Q Consensus 132 ~l~~~~~~---l~s~~~dg~i~iw~~~~~~ 158 (450)
+++|.-+. ++.|..+|.|.+||++..+
T Consensus 240 SC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 240 SCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 99998443 9999999999999998774
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.9e-05 Score=73.76 Aligned_cols=230 Identities=11% Similarity=0.120 Sum_probs=131.3
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEE
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIR 150 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 150 (450)
.+.|.++.| +++.++.+..+|.|.+-|.++...... ..-...|.+++|++|. ++..+.++++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-------------g~vd~GI~aaswS~Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-------------GNVDNGISAASWSPDEELLALITGRQTLL 134 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-------------eeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence 368999999 899999999999999998887764433 2234689999999988 66666667776
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee--------ccee--eee---cCCCceEEEE
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR--------HKKC--TWV---HHVDTVSALA 217 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~---~~~~~v~~~~ 217 (450)
+-.-.-.-... ..+..-......+..+......-++.. .... ... .-.+.=+.+.
T Consensus 135 ~mT~~f~~i~E------------~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is 202 (1265)
T KOG1920|consen 135 FMTKDFEPIAE------------KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSIS 202 (1265)
T ss_pred EEeccccchhc------------cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEE
Confidence 65432110000 000000000000000000100001110 0000 000 1112234689
Q ss_pred EccCCCEEEEEe----CC-CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE---cCCCcEEEEeCcchhhh
Q 041325 218 LSSDGSLLYSTS----WD-RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG---SADTKIKVWKKLRAALQ 289 (450)
Q Consensus 218 ~~~~~~~l~~~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~ 289 (450)
|--||+++++.. .+ ..|++||-+ |.. ........+.-.+++|-|.+. .+++- ..|+.|.++.-..-.
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~-- 277 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLR-- 277 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCcc--
Confidence 999999999842 23 789999987 433 222224455567889998444 55543 345678888743221
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEE---eeCCCcEEEEEcCCCc
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYS---GACDRSILVWERDQGN 337 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~---g~~dg~i~vwd~~~~~ 337 (450)
.....-.+......+..++|+.++..|++ ......|++|-+.+-.
T Consensus 278 ---hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 ---HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ---ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 11112222223344899999999999988 4455569999987654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-05 Score=70.38 Aligned_cols=174 Identities=10% Similarity=0.058 Sum_probs=101.5
Q ss_pred ceEEEEEccCCCE-EEEEeC---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--CcEEEEeCcc
Q 041325 212 TVSALALSSDGSL-LYSTSW---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--TKIKVWKKLR 285 (450)
Q Consensus 212 ~v~~~~~~~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~ 285 (450)
....-.|+|+|+. ++..+. +..|.++|+.+++...... ..+......|+|++..++++.+.+ ..|.++|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 6678899999984 554433 3568999998886554433 445566678999777666666555 4577777755
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-C--cEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-R--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
++ ...+..+........|+|||+.|+..+.. + .|+++|+.+++... ....+.. .
T Consensus 267 g~---------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r------------lt~~g~~--~ 323 (419)
T PRK04043 267 KT---------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ------------VVFHGKN--N 323 (419)
T ss_pred Cc---------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe------------CccCCCc--C
Confidence 54 11122222223456799999987776642 3 58888887765320 0111111 1
Q ss_pred EEEEEeCCeEEEEeCC---------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 363 LCLAVVSNLLFSGSSD---------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 363 ~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
..++.+++.|+..+.. ..|.+.|+.++. ...+... .......|+||++
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---------~~~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---------IRRLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---------eEECCCC-CCcCCeEECCCCC
Confidence 2333345555544433 357777877641 2223222 2233578999998
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00026 Score=64.27 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=78.5
Q ss_pred eEEEEEcc-CCCEEEEE----eCCCc----EEEEecCCCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 213 VSALALSS-DGSLLYST----SWDRT----FKIWRTSDFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 213 v~~~~~~~-~~~~l~~~----~~dg~----i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
..++.|+. +...+.+. +.+|. -.+|++...+ .+..........+.+.+++|+.+ .++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEE
Confidence 35566665 33334432 22333 3456665443 33333346788999999999555 89999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
|...+. .......-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 287 D~~~~~----------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGV----------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCCe----------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 986543 1112234457889999999999999999999999987544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00057 Score=58.21 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=104.5
Q ss_pred eEEEEEc-cCCCEEEEEeCCCcEEEEecCCCeEEEEeec---c-cccceEEEEEeecCCcEEEEEcCC--------CcEE
Q 041325 213 VSALALS-SDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---A-HDDAINAIVVSKSNDGFVYTGSAD--------TKIK 279 (450)
Q Consensus 213 v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~ 279 (450)
...+++. +++. ++.+.. +.+.++|..+++....... . .....+.+++.+++. +.++.... |.|.
T Consensus 42 ~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceE
Confidence 6677787 5654 555554 4456669988865544442 1 456788999997444 55554433 4566
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEE-EeeCCCcEEEEEcCCCce-eeeCCCCCCceeeeccccC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY-SGACDRSILVWERDQGNY-IVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~g~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 357 (450)
.++.. ++ .......-...+.|+|+|+++.|+ +-+..+.|..|++..... +. .......+..
T Consensus 119 ~~~~~-~~---------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~ 181 (246)
T PF08450_consen 119 RIDPD-GK---------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS-------NRRVFIDFPG 181 (246)
T ss_dssp EEETT-SE---------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE-------EEEEEEE-SS
T ss_pred EECCC-Ce---------EEEEecCcccccceEECCcchheeecccccceeEEEecccccccee-------eeeeEEEcCC
Confidence 66654 22 122222345578999999999776 556678899999864321 10 0001112222
Q ss_pred CccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 358 HTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 358 ~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
..+..-.++++ +++.++....+.|.+++.+ + +.+..+.-....+++++|.
T Consensus 182 ~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G--------~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 182 GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G--------KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S--------CEEEEEE-SSSSEEEEEEE
T ss_pred CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c--------cEEEEEcCCCCCEEEEEEE
Confidence 22335677776 5566666678999999977 3 4555555555589999995
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-05 Score=68.63 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=70.3
Q ss_pred eecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 206 WVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
+..|...|.+++|+|..+ ++..++.+..|+|.|+++..++..+. .+ ..+++++|.-++.+++.+|-.+|.|.+||++
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 345778899999999766 78889999999999999998888887 44 8999999998888899999999999999998
Q ss_pred chh
Q 041325 285 RAA 287 (450)
Q Consensus 285 ~~~ 287 (450)
..+
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 765
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-07 Score=83.37 Aligned_cols=203 Identities=17% Similarity=0.259 Sum_probs=130.4
Q ss_pred CCCcceEEEEE----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEe-
Q 041325 73 GNSSYIPSLAI----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAH- 144 (450)
Q Consensus 73 ~h~~~v~~~~~----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~- 144 (450)
.....+.|++. |...++.|..+|.|-+-.+....-. ......+|...+++++|++-. |++|-
T Consensus 54 sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar~Ct~lAwneLDtn~LAagld 123 (783)
T KOG1008|consen 54 SDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----------SAEVTPGYARPCTSLAWNELDTNHLAAGLD 123 (783)
T ss_pred ccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc----------cceecccccccccccccccccHHHHHhhhh
Confidence 34567788877 3568899999999999877654322 011244777899999999653 55552
Q ss_pred ---CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee-cCCCceEEEEEcc
Q 041325 145 ---QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV-HHVDTVSALALSS 220 (450)
Q Consensus 145 ---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~ 220 (450)
.|..+.|||+.+.-. .|.... .+. +......+++|..
T Consensus 124 khrnds~~~Iwdi~s~lt-------------------vPke~~--------------------~fs~~~l~gqns~cwlr 164 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLT-------------------VPKESP--------------------LFSSSTLDGQNSVCWLR 164 (783)
T ss_pred hhcccCCccceecccccC-------------------CCcccc--------------------ccccccccCcccccccc
Confidence 356799999988721 000000 000 1222455888888
Q ss_pred CCCEEEEEeCCCcEEEEecCCCe-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC-cchhhhccccchhhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK-LRAALQVNKKHSLVQ 298 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~ 298 (450)
+.+++.+|.....+.++|++... ....+ ....+..+.+.|...+++++-. ||.|.+||. ++-+ .++.
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-------npl~ 233 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-------NPLQ 233 (783)
T ss_pred Ccchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCceeccc-cCceeeccchhhhc-------cHHH
Confidence 89999999999999999998432 22222 3456777888886666766555 999999994 3222 1333
Q ss_pred hHhhcc----cceEEEEEcCCC-CEEEEeeC-CCcEEEEEcCC
Q 041325 299 TLEKHK----SAVTALALSTDG-TVLYSGAC-DRSILVWERDQ 335 (450)
Q Consensus 299 ~~~~~~----~~i~~l~~~~~~-~~l~~g~~-dg~i~vwd~~~ 335 (450)
.+...+ ..+..++|+|.. .++++... .++|+.||+..
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 333222 248999999943 24444444 57899999863
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00048 Score=67.74 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=119.2
Q ss_pred CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
+.|.++.|..+. ++.+..+|.|.+-|.++... +.+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--------------eivg---------------------------- 106 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL--------------EIVG---------------------------- 106 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce--------------eeee----------------------------
Confidence 589999998555 88888899999988776632 1111
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEec----CCCeEE-------------------EEeec-----------c
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT----SDFRCL-------------------ESVKN-----------A 251 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~~~~-------------------~~~~~-----------~ 251 (450)
.-...|.+++|+||++.++..+.++++.+-+- -..+.+ ..+.. .
T Consensus 107 --~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~ 184 (1265)
T KOG1920|consen 107 --NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIE 184 (1265)
T ss_pred --eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccc
Confidence 13447999999999999999988888776532 111111 11110 0
Q ss_pred ---------cccceEEEEEeecCCcEEEE-----EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 252 ---------HDDAINAIVVSKSNDGFVYT-----GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 252 ---------~~~~v~~~~~~~~~~~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
..+.=.+|.|..++. ++++ ......|++||.+ +. +-..-......=.+++|-|.|.
T Consensus 185 ~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE-g~--------Lns~se~~~~l~~~LsWkPsgs 254 (1265)
T KOG1920|consen 185 KEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGTRKIRVYDRE-GA--------LNSTSEPVEGLQHSLSWKPSGS 254 (1265)
T ss_pred ccccccchhhccCCceEEEccCCc-EEEEEEEeccCCceeEEEeccc-ch--------hhcccCcccccccceeecCCCC
Confidence 011223477774222 5555 2233799999975 33 2222222233446799999999
Q ss_pred EEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEE---EeCCCeEEEeeCCC
Q 041325 318 VLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFS---GSSDNTIRIWRRSS 388 (450)
Q Consensus 318 ~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s---~~~dg~v~iwd~~~ 388 (450)
++++-. .|+.|.+|.-+.-+. + ............+..++|+. +.|+. ......|++|-+.+
T Consensus 255 ~iA~iq~~~sd~~IvffErNGL~h--------g--~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFERNGLRH--------G--EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eEeeeeecCCCCcEEEEecCCccc--------c--ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 988854 356788888653221 1 11122333344589999984 46665 44455599998764
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00025 Score=63.90 Aligned_cols=267 Identities=13% Similarity=0.098 Sum_probs=124.6
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeE-EeccCcccccceeeeeeccCCCcceeEeee-cCceEEEeeccee
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAY-YSTSGKLKNKYYERIATLPTLNDRFTKCFL-ANNYVQVRRHKKC 204 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 204 (450)
.|+.+.|.++. |+.|...|.|.+|.+...+... ........ .....+ ........+..... ....+.-.-.+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLD-YNFRRF-SLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S---GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccC-cccccc-cccCCCcceEEehhhCCcccccccCchh
Confidence 57889998775 9999999999999987663321 00000000 000000 00000000000000 0000000011222
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-------ccccceEEEEEee---cCCc----EEE
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-------AHDDAINAIVVSK---SNDG----FVY 270 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~---~~~~----~l~ 270 (450)
.+....++|++++.+.-| +++.|..+|.+.|.|++....+..-.. .....++++.|.- .++. .++
T Consensus 81 l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 333457899999997444 899999999999999998877765321 1234677777762 2232 589
Q ss_pred EEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE-EcCC--------------------CCEEEEeeCCCcEE
Q 041325 271 TGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA-LSTD--------------------GTVLYSGACDRSIL 329 (450)
Q Consensus 271 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~--------------------~~~l~~g~~dg~i~ 329 (450)
+|+..|.+.+|.+.-.... ............+.+.|..+. ++.+ -+-++....+..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g-~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNG-RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG--EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEeCCCCEEEEEEecCCCC-ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 9999999999987521100 001111111123445555444 3221 01234444577899
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE-------eCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEE
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV-------VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV 402 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 402 (450)
++...+.+... ..+ ........+.+ .+..|++-..+|.|++|.+.. .+.+..
T Consensus 239 v~~~~~~k~~~------------K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~--------Lkei~~ 297 (395)
T PF08596_consen 239 VFKPPKSKGAH------------KSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS--------LKEIKS 297 (395)
T ss_dssp EE-TT---EEE------------EE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----------EEEE
T ss_pred EEeCCCCcccc------------eee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC--------chHhhc
Confidence 99988776442 111 11111222222 244888889999999999886 344444
Q ss_pred ecCC----CcceEEEEEEecCC
Q 041325 403 LEGH----RRPVKCLTAVVDSD 420 (450)
Q Consensus 403 ~~~h----~~~v~~l~~~~~~~ 420 (450)
..-+ ...+....++++|+
T Consensus 298 ~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 298 VSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp EE-SS---HHHHTT-EE-TTS-
T ss_pred ccCCCccccccccccEECCCCC
Confidence 4332 23455566677776
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00036 Score=63.97 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=69.6
Q ss_pred ceEEEEEccCCCEEEEE-eC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcch
Q 041325 212 TVSALALSSDGSLLYST-SW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRA 286 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~ 286 (450)
......|+|||+.++.. +. +..|.++|+.+++. ..+. .+........|+|++..++++....+ .|.++|+..+
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 45567799999876654 33 35688889877764 3343 23333345679997776766665555 4666677655
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---------CcEEEEEcCCCc
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD---------RSILVWERDQGN 337 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d---------g~i~vwd~~~~~ 337 (450)
+.. ... ..+. ....|+|||++|+..... ..|.+.|+.++.
T Consensus 312 ~~~-----rlt--~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 312 SVE-----QVV--FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CeE-----eCc--cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 410 011 1111 124899999988876653 367888887664
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0013 Score=60.02 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=90.3
Q ss_pred ccceEEEEEeecCCcEEEEE----cCCCcE----EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 253 DDAINAIVVSKSNDGFVYTG----SADTKI----KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 253 ~~~v~~~~~~~~~~~~l~~~----~~dg~i----~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
+....++.|+-..+..+.+. +.+|.+ .+|++..++.+ ...+..+ ..++.+.+++++|+.+.++.|+.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq----rvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~ 279 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ----RVSVTSI-PLPSQVICCARSPSEDKLVLGCE 279 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee----EEEEEEE-ecCCcceEEecCcccceEEEEec
Confidence 33446667775455444433 234433 35665443311 1111122 36678999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCcccc-----CCCc
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDH-----QKGY 397 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~-----~~~~ 397 (450)
||.|.+||...+.. ......-..+.++|+++ .+++|+.-|.+.+||+.-..... ....
T Consensus 280 DgSiiLyD~~~~~t---------------~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P 344 (545)
T PF11768_consen 280 DGSIILYDTTRGVT---------------LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATP 344 (545)
T ss_pred CCeEEEEEcCCCee---------------eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCC
Confidence 99999999886531 12223344688999865 99999999999999987432110 0011
Q ss_pred ee---EEEecCCCcceEEEEEEecCC
Q 041325 398 SC---LAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 398 ~~---~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.. +...-.+......+.|.+...
T Consensus 345 ~~~L~Ls~yf~~~~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 345 KSTLQLSKYFRVSSSLVHIQWAPAPQ 370 (545)
T ss_pred ccEEeeehhccCcchhheeEeccCCC
Confidence 11 112223456677888885543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=9.9e-05 Score=69.59 Aligned_cols=207 Identities=12% Similarity=0.206 Sum_probs=131.8
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc-eEEEEEeCC--eEEEEeCCC-----e
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA-VKSLVVLGD--KLFSAHQDH-----K 148 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~--~l~s~~~dg-----~ 148 (450)
.|+|++-.+..++.|+.+|.|.+.+-.-.. ... +..+... |..+....+ .|++.+.|+ .
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~-~~~------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~l 93 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQL-IRG------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVL 93 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccccee-eeh------------heecchhhhhHhhcccCceEEEEEeecCCCCceE
Confidence 788888899999999999999888743211 111 3344444 455544444 377777765 4
Q ss_pred EEEEEcCCCceeEEeccCcccccce--eeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYY--ERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+++|+++..+.. ..+..+ ..+...+. .....++.+++.+.+-+.+|
T Consensus 94 lkiw~lek~~~n-------~sP~c~~~~ri~~~~n-------------------------p~~~~p~s~l~Vs~~l~~Iv 141 (933)
T KOG2114|consen 94 LKIWDLEKVDKN-------NSPQCLYEHRIFTIKN-------------------------PTNPSPASSLAVSEDLKTIV 141 (933)
T ss_pred EEEecccccCCC-------CCcceeeeeeeeccCC-------------------------CCCCCcceEEEEEccccEEE
Confidence 999999865210 001111 01111111 01355789999999999999
Q ss_pred EEeCCCcEEEEecC---CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 227 STSWDRTFKIWRTS---DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 227 ~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
+|-.+|.|..+.-+ +......+......+|+.+.+..++...+++++. ..|.+|.+.. + . .....+..|
T Consensus 142 ~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~g-r-----~-p~~~~ld~~ 213 (933)
T KOG2114|consen 142 CGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYSLSG-R-----T-PSLKVLDNN 213 (933)
T ss_pred EEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEEecC-C-----C-cceeeeccC
Confidence 99999999998532 1111223333567899999999766553444443 4689999862 2 1 234456778
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
...+.|..+++....+++++ +..|.+|+....+
T Consensus 214 G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 88899999997655465554 4569999987543
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-07 Score=85.61 Aligned_cols=205 Identities=15% Similarity=0.172 Sum_probs=132.6
Q ss_pred CCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEE-EEeecccccceEEEEEeecCCcEEEEEcC----CCcEEEEe
Q 041325 210 VDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGSA----DTKIKVWK 282 (450)
Q Consensus 210 ~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd 282 (450)
...+.|+++.- +..+++.|..+|.|-+-.++...-. .++..++....++++|++-+.+.|++|-. |-.+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34677777765 3457888999999999888765443 55555788899999999876677877743 56799999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
+.+.-......+.... +......+++|-.+.+++++|.....++++|++.... ....-.+..+
T Consensus 136 i~s~ltvPke~~~fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--------------~~~svnTk~v 198 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--------------SVSSVNTKYV 198 (783)
T ss_pred cccccCCCcccccccc---ccccCccccccccCcchhhcccccchhhhhhhhhhhh--------------hhhhhhhhhc
Confidence 9776321111111111 1334456889998999999999999999999983210 1111112223
Q ss_pred EEEE---EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC----cceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 363 LCLA---VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR----RPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 363 ~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
..+. |.++++++-. ||.|.+||..... ..++..+.... ..+..++|+|.... ++
T Consensus 199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~rni------enpl~~i~~~~N~~~~~l~~~aycPtrtg------------ll 259 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNS-DGDIAIWDTYRNI------ENPLQIILRNENKKPKQLFALAYCPTRTG------------LL 259 (783)
T ss_pred ccceecCCCCCceeccc-cCceeeccchhhh------ccHHHHHhhCCCCcccceeeEEeccCCcc------------hh
Confidence 3333 3567888766 9999999942110 12222222112 24889999998764 56
Q ss_pred EEccc-CCcEEEEEeC
Q 041325 436 YSGSL-DCEIKIWQIR 450 (450)
Q Consensus 436 ~s~~~-Dg~i~iw~l~ 450 (450)
++... .++|+++|++
T Consensus 260 a~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 260 AVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhccCcceEEEeccc
Confidence 66664 5678888874
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0013 Score=62.06 Aligned_cols=285 Identities=9% Similarity=0.091 Sum_probs=147.6
Q ss_pred EeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc--eEEEEEeC-CeEEEEeCCCeEEEEEcCCCce
Q 041325 83 IAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA--VKSLVVLG-DKLFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 83 ~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~-~~l~s~~~dg~i~iw~~~~~~~ 159 (450)
+.+..++.++.+|.|+..|..+++............ ..... ...+.... +.++.++.+|.|..+|.++++.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~------~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD------RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc------ccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE
Confidence 356677778888999999999998776533222100 00000 11223434 6788889999999999999987
Q ss_pred eEEeccCccc-------c--cceeeeeeccCC--------CcceeEeeecCceEEEeecceee-----ee---------c
Q 041325 160 AYYSTSGKLK-------N--KYYERIATLPTL--------NDRFTKCFLANNYVQVRRHKKCT-----WV---------H 208 (450)
Q Consensus 160 ~~~~~~~~~~-------~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~ 208 (450)
.......... . .....+..+... ......++....-..++...... .. .
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 6554433210 0 000000000000 01111222222112222211100 00 0
Q ss_pred CC-Cce-EEEEEccCCCEEEEEeCCC------------------cEEEEecCCCeEEEEeeccccc-----ceEEEEEee
Q 041325 209 HV-DTV-SALALSSDGSLLYSTSWDR------------------TFKIWRTSDFRCLESVKNAHDD-----AINAIVVSK 263 (450)
Q Consensus 209 ~~-~~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~ 263 (450)
+. ..+ ...++.+.+..++.++.++ .|.-+|..+++.+-.++..+.. ......+..
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 00 011 1234455566777777665 7999999999998877532211 001111110
Q ss_pred ---cCC---cEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe---------------
Q 041325 264 ---SND---GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG--------------- 322 (450)
Q Consensus 264 ---~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g--------------- 322 (450)
... ..++.++.+|.+...|.++++. +...... ...++.+| ..++.+
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~--------~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL--------ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcE--------eeEeEee---ccccccCC--ceEEEccccccccCcccccCC
Confidence 011 2578888999999999988872 2111100 11223333 223322
Q ss_pred ---eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 323 ---ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 323 ---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
..+|.|.-.|+.+++.+.+......... ...... ..-..+...++.|+.++.||.|+.+|.+++
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~--~~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDS--WNIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccc--cccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence 2467899999999987754333211000 000000 111234556789999999999999999987
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00031 Score=62.29 Aligned_cols=236 Identities=15% Similarity=0.184 Sum_probs=138.0
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
-.-++..++++|.+ |++... .-|.+|.-.... .+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~----------------~l~~~~----------------------- 70 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA----------------KLVRFR----------------------- 70 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchh----------------heeeee-----------------------
Confidence 44578899999888 444443 459999887662 222221
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCC---------------CcEEEEecCCCeEEEEeecccccc--eE-EEEEeecC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWD---------------RTFKIWRTSDFRCLESVKNAHDDA--IN-AIVVSKSN 265 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~ 265 (450)
| ..|..+.|+|++++|.+=+.. +.+.+||+.++..+..+. ....+ .+ -+.|+-+
T Consensus 71 -----~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~- 142 (561)
T COG5354 71 -----H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSID- 142 (561)
T ss_pred -----c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeec-
Confidence 2 247888899999998875543 359999999999998886 33332 33 5667753
Q ss_pred CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC--CEEEE-----eeCCCcEEEEEcCCCce
Q 041325 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG--TVLYS-----GACDRSILVWERDQGNY 338 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~~-----g~~dg~i~vwd~~~~~~ 338 (450)
+.+++-- ....++++++ +... .......+. ...|....|+|.+ ..|+. ...++.+++|.+..++.
T Consensus 143 D~y~ARv-v~~sl~i~e~-t~n~----~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 143 DKYVARV-VGSSLYIHEI-TDNI----EEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred chhhhhh-ccCeEEEEec-CCcc----ccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 3343322 3456999997 3321 111222222 3668888999854 33443 34577899998886554
Q ss_pred eeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEe-----------CCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGS-----------SDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
+. ...+.. ..-..+.|. +++|+.-- .+..++++++.. .-+.....
T Consensus 215 l~-----------tk~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e---------~~i~V~~~ 272 (561)
T COG5354 215 LV-----------TKNLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE---------RSIPVEKD 272 (561)
T ss_pred ee-----------eeeeEe--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc---------cccceecc
Confidence 41 011110 111234444 33222111 235577887773 11222225
Q ss_pred CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 406 HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 406 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
-.++|...+|.|.++. .-+++|-.+..+.++|+|
T Consensus 273 ~~~pVhdf~W~p~S~~-----------F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 273 LKDPVHDFTWEPLSSR-----------FAVISGYMPASVSVFDLR 306 (561)
T ss_pred ccccceeeeecccCCc-----------eeEEecccccceeecccc
Confidence 5789999999998872 134444567777777764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.2e-05 Score=66.52 Aligned_cols=209 Identities=13% Similarity=0.109 Sum_probs=118.7
Q ss_pred ceEEEEEccCCCEEEEEeC-----------CCcEEEEecCCCeEEEEeec--ccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 212 TVSALALSSDGSLLYSTSW-----------DRTFKIWRTSDFRCLESVKN--AHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
.|.-+.|||+.+||++-+. ...++|||+.+|...+.+.. .....-.-+.|+. ++.+++.-.. ..|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSI 328 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceE
Confidence 4788999999999998652 25799999999998888763 1122233457876 3446665555 568
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceee-------------
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIV------------- 340 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~------------- 340 (450)
.||+...-. ++..-.-.-..|....|+|.+++||-=... -.+.+..+.+++.+.
T Consensus 329 sIyEtpsf~--------lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh 400 (698)
T KOG2314|consen 329 SIYETPSFM--------LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH 400 (698)
T ss_pred EEEecCcee--------eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE
Confidence 999864422 222112233567777888877776643321 123333333332211
Q ss_pred -eCCCCC--------------Ccee--eecccc---------CCccceEEEEEe--CCeEEEEeC---CCeEEEeeCCCC
Q 041325 341 -DGDDDS--------------GHMV--LKGALR---------GHTKAILCLAVV--SNLLFSGSS---DNTIRIWRRSSS 389 (450)
Q Consensus 341 -~~~~~~--------------~~~~--~~~~~~---------~~~~~v~~~~~~--~~~l~s~~~---dg~v~iwd~~~~ 389 (450)
+-+.+. +... ....+. .-...|..++|. |+.+++-+. ..++.+|.+++.
T Consensus 401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN 480 (698)
T ss_pred eccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecC
Confidence 000000 0000 000000 123456777776 443333322 356889988842
Q ss_pred ccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc---cCCcEEEEEe
Q 041325 390 VTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS---LDCEIKIWQI 449 (450)
Q Consensus 390 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~---~Dg~i~iw~l 449 (450)
...+..+..+.. ...+.+.|+|.|+ +++.+. ..|.+.++|+
T Consensus 481 ----~~~~~lVk~~dk--~~~N~vfwsPkG~-------------fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 481 ----IKKPSLVKELDK--KFANTVFWSPKGR-------------FVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred ----CCchhhhhhhcc--cccceEEEcCCCc-------------EEEEEEecccccceEEEec
Confidence 334555666543 5678999999999 665543 4677888775
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=8e-05 Score=70.20 Aligned_cols=183 Identities=15% Similarity=0.234 Sum_probs=115.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc-eEEEEEeecCCcEEEEEcCCC-----cEEEEeCcchhhhc
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA-INAIVVSKSNDGFVYTGSADT-----KIKVWKKLRAALQV 290 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~ 290 (450)
+|++.+..++.|+.+|.|.+.+-. .+.+..++ .+... |..+-.. ...++|++.+.|+ .+++|+++..+-+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq-a~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n- 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQ-AYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN- 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehhe-ecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCC-
Confidence 467788899999999999888753 34446666 55555 4444433 2445777766655 4899999775411
Q ss_pred cccchhh---h----hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 291 NKKHSLV---Q----TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 291 ~~~~~~~---~----~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
..+.++ + .......++.+++.+.+-+.+++|-.+|.|..+.-.-.+- .+. ...-...-..+|+
T Consensus 106 -~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-------rgs--r~~~~~~~~~pIT 175 (933)
T KOG2114|consen 106 -NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-------RGS--RQDYSHRGKEPIT 175 (933)
T ss_pred -CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-------ccc--ceeeeccCCCCce
Confidence 112222 1 1112356789999999999999999999999886432110 000 0111223357899
Q ss_pred EEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 364 CLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 364 ~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.+++.. ..++-......|.+|.+... + .....+..|..+++|..+++...
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr------~-p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGR------T-PSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCC------C-cceeeeccCCccceeeecCCCCc
Confidence 999973 33222333456899998831 2 34555778888899988887655
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.5e-05 Score=73.14 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=104.8
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
+...|.--+++..+++++.|+.-|.+.+|+-..++....-.....+.+..+..++ .+.+++.|+..|.|.++-+....-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4445665667778999999999999999998776654433323333444445554 565889999999999998765320
Q ss_pred hccccchhhhh-HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 289 QVNKKHSLVQT-LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 289 ~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
.....+.. -..|...|++++|++|+..+++|...|+|..-.+.+.... ....+.+..-.+.|..+.+
T Consensus 111 ---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~---------~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 111 ---RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAF---------LSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred ---CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhh---------ccccceeeccCcceEEeec
Confidence 11111111 1237789999999999999999999999999888762110 1122333445677888888
Q ss_pred eCCeEEEEeCCC
Q 041325 368 VSNLLFSGSSDN 379 (450)
Q Consensus 368 ~~~~l~s~~~dg 379 (450)
...+|+.++--.
T Consensus 179 ~q~~LLVStl~r 190 (726)
T KOG3621|consen 179 LQSYLLVSTLTR 190 (726)
T ss_pred ccceehHhhhhh
Confidence 766555444433
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.21 E-value=7.5e-07 Score=83.50 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=109.7
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-cEEEEe
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-KIKVWK 282 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vwd 282 (450)
..+..|....+|++|+.+.+.|+.|+..|.|+++++.+|....... .|..+|+-+.-+.+++.+|.+++... -..+|+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhc
Confidence 3456788899999999999999999999999999999999888887 89999999988876664555554444 567899
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
+... ....+.+. .-.++.|+...+.-+.|+......+||+.++..+..+- ....+....-
T Consensus 1174 ~~s~-------~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl---------t~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1174 ASST-------GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL---------TDTVTSSYSN 1233 (1516)
T ss_pred cccc-------cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc---------Ccchhhhhhc
Confidence 7431 11333332 34678888765555666666779999999987552211 1111112222
Q ss_pred EEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 363 LCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 363 ~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
.+..|++. .|+- +||. +||++..
T Consensus 1234 n~a~FsP~D~LIl--ndGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1234 NLAHFSPCDTLIL--NDGV--LWDVRIP 1257 (1516)
T ss_pred cccccCCCcceEe--eCce--eeeeccH
Confidence 55666654 2221 4664 6888863
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0044 Score=52.84 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=114.5
Q ss_pred CCEEEEeeCCCc-EEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE-----eCCCeEEEEEcCC
Q 041325 85 GKLLYGGSSNGE-IRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA-----HQDHKIRVWKIDN 156 (450)
Q Consensus 85 ~~~l~tgs~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~-----~~dg~i~iw~~~~ 156 (450)
+..++.+-.-|+ ..+||..+++.......... -.+.||. .|++|+ |++. ...|.|-|||...
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g----RHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG----RHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC----CEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 444555555443 45778877776655333222 2366774 577666 5554 3358899999984
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-------
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------- 229 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------- 229 (450)
.- ..+..++ .|.-.-..+.+.|||+.|+++.
T Consensus 87 ~~---------------~ri~E~~---------------------------s~GIGPHel~l~pDG~tLvVANGGI~Thp 124 (305)
T PF07433_consen 87 GY---------------RRIGEFP---------------------------SHGIGPHELLLMPDGETLVVANGGIETHP 124 (305)
T ss_pred Cc---------------EEEeEec---------------------------CCCcChhhEEEcCCCCEEEEEcCCCccCc
Confidence 31 2222222 2333445667778886666552
Q ss_pred -----------CCCcEEEEecCCCeEEEEee---cccccceEEEEEeecCCcEEEEEcC-CC-------cEEEEeCcchh
Q 041325 230 -----------WDRTFKIWRTSDFRCLESVK---NAHDDAINAIVVSKSNDGFVYTGSA-DT-------KIKVWKKLRAA 287 (450)
Q Consensus 230 -----------~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~-dg-------~i~vwd~~~~~ 287 (450)
.+-.+...|..+|+.+.+.. ..|.-.+..+++.+ ++.++.+.. .| .|.+++....-
T Consensus 125 d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~ 202 (305)
T PF07433_consen 125 DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRGGAL 202 (305)
T ss_pred ccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCCCcc
Confidence 12345556777888777643 13566788898885 344444332 11 12333321110
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCcee
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYI 339 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~ 339 (450)
. ...............+-+|++++++.++++.+ ..+.+.+||..+++.+
T Consensus 203 -~--~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 203 -R--LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred -e--eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 0 00001222334567899999999998876655 5678999999998765
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0009 Score=59.54 Aligned_cols=183 Identities=19% Similarity=0.291 Sum_probs=117.0
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecC------CcEEEEEcC----------CCcEEEEeCcchhhhccccch
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN------DGFVYTGSA----------DTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~ 295 (450)
..|++.|..+.+.+..+.......+.+++...-. ..++++|+. .|.|.++++..... .....+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-NNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-cceEEE
Confidence 4689999998888877775566677776655422 346776653 28999999877410 001122
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc-eeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN-YIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFS 374 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 374 (450)
.+... ..+++|++++-- +++ |+++. ++.|.+|++...+ .. ...... ....++++...+++++.
T Consensus 81 ~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~-----------~~~~~~-~~~~i~sl~~~~~~I~v 144 (321)
T PF03178_consen 81 LIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLL-----------KKAFYD-SPFYITSLSVFKNYILV 144 (321)
T ss_dssp EEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEE-----------EEEEE--BSSSEEEEEEETTEEEE
T ss_pred EEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccch-----------hhheec-ceEEEEEEeccccEEEE
Confidence 22222 346888888766 444 54443 5889999998765 22 222222 23478899999999999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|..-..+.++.++.. ......+.. ......++++.|.++++ .++.+..+|.|.++..
T Consensus 145 gD~~~sv~~~~~~~~----~~~l~~va~-d~~~~~v~~~~~l~d~~-------------~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 145 GDAMKSVSLLRYDEE----NNKLILVAR-DYQPRWVTAAEFLVDED-------------TIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EESSSSEEEEEEETT----TE-EEEEEE-ESS-BEEEEEEEE-SSS-------------EEEEEETTSEEEEEEE
T ss_pred EEcccCEEEEEEEcc----CCEEEEEEe-cCCCccEEEEEEecCCc-------------EEEEEcCCCeEEEEEE
Confidence 999888988865531 111222222 23456789999987776 8999999999998864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0065 Score=51.85 Aligned_cols=157 Identities=17% Similarity=0.294 Sum_probs=95.8
Q ss_pred EEEccCCCEEEEEe-----CCCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEE-Ec---------------
Q 041325 216 LALSSDGSLLYSTS-----WDRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYT-GS--------------- 273 (450)
Q Consensus 216 ~~~~~~~~~l~~~~-----~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~--------------- 273 (450)
-.|++||++|++.- ..|.|-|||.. +.+.+.++. .+.-....+.+.|+++.+++. |+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 46999999999864 35899999999 677888887 555556778888755433322 11
Q ss_pred -CCCcEEEEeCcchhhhccccchhhhh--H--hhcccceEEEEEcCCCCEEEEeeCCCc-------EEEEEcCCCceeee
Q 041325 274 -ADTKIKVWKKLRAALQVNKKHSLVQT--L--EKHKSAVTALALSTDGTVLYSGACDRS-------ILVWERDQGNYIVD 341 (450)
Q Consensus 274 -~dg~i~vwd~~~~~~~~~~~~~~~~~--~--~~~~~~i~~l~~~~~~~~l~~g~~dg~-------i~vwd~~~~~~~~~ 341 (450)
.+-++.+.|..+++ ++.. + ..|...|..+++.++|..++..-..|. |-+++.... +..
T Consensus 135 tM~psL~~ld~~sG~--------ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~ 204 (305)
T PF07433_consen 135 TMQPSLVYLDARSGA--------LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRL 204 (305)
T ss_pred hcCCceEEEecCCCc--------eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--cee
Confidence 12234444544444 2222 3 336778999999999877666554432 223322211 100
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCC
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~ 389 (450)
+.. .......-...+-+|+++.+ ..+|+=..|.+.+||..++
T Consensus 205 ~~~------p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 205 LPA------PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred ccC------ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 000 00112233466788888754 4466667889999999875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.001 Score=60.89 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=113.2
Q ss_pred cCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 125 GNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
........+.++|++ +++.+.||...++.......
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-------------------------------------------- 65 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-------------------------------------------- 65 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE--------------------------------------------
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc--------------------------------------------
Confidence 344467899999888 66667889988888443311
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
...+.....+|.+.++ +|+-...+.|.|+.--+.+....+.. ...+..|-. +.+|+..+. +.|.+||+
T Consensus 66 ----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~--~~~~~~If~----G~LL~~~~~-~~i~~yDw 133 (443)
T PF04053_consen 66 ----KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKL--PFSVEKIFG----GNLLGVKSS-DFICFYDW 133 (443)
T ss_dssp ----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-------SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred ----cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcC--CcccceEEc----CcEEEEECC-CCEEEEEh
Confidence 0122456678988554 66667688999963323333334431 222333322 335555444 48999999
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.+++ .+..+.. ..|..+.|+++|++++..+.+ .+.|++........ ..+.+..........-...|.
T Consensus 134 ~~~~--------~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~--~~~~g~e~~f~~~~E~~~~Ik 200 (443)
T PF04053_consen 134 ETGK--------LIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA--IPEEGVEDAFELIHEISERIK 200 (443)
T ss_dssp TT----------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH--BTTTB-GGGEEEEEEE-S--S
T ss_pred hHcc--------eeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc--ccccCchhceEEEEEecceeE
Confidence 7766 5555542 248999999999999988755 67777765320000 000000000011111146788
Q ss_pred EEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 364 CLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
+..|.++.++-.... .++.+ -.| ....+..+ ..++.=+.+.+... .+.....|+.
T Consensus 201 Sg~W~~d~fiYtT~~-~lkYl--~~G------e~~~i~~l---d~~~yllgy~~~~~-------------~ly~~Dr~~~ 255 (443)
T PF04053_consen 201 SGCWVEDCFIYTTSN-HLKYL--VNG------ETGIIAHL---DKPLYLLGYLPKEN-------------RLYLIDRDGN 255 (443)
T ss_dssp EEEEETTEEEEE-TT-EEEEE--ETT------EEEEEEE----SS--EEEEEETTTT-------------EEEEE-TT--
T ss_pred EEEEEcCEEEEEcCC-eEEEE--EcC------CcceEEEc---CCceEEEEEEccCC-------------EEEEEECCCC
Confidence 888988854444444 67663 222 01222322 35666677777666 7888888888
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
|..+.|
T Consensus 256 v~~~~l 261 (443)
T PF04053_consen 256 VISYEL 261 (443)
T ss_dssp EEEEE-
T ss_pred EEEEEE
Confidence 887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0017 Score=58.64 Aligned_cols=210 Identities=16% Similarity=0.178 Sum_probs=109.7
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE-------------------------------------------EEe
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL-------------------------------------------ESV 248 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------------~~~ 248 (450)
.|+.+.|.++...|++|...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4788888888788888888888888854321111 111
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-----CC---CEEE
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-----DG---TVLY 320 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~---~~l~ 320 (450)
....++|.+++.+ +=++++.|..+|.+.|.|+|....-..........-......++++.|.. |+ -.|+
T Consensus 83 -~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 -DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ----S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred -eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 1346789999987 67799999999999999997765322211111001122345678888863 33 4789
Q ss_pred EeeCCCcEEEEEcCC---CceeeeCCCCCCceeeeccccCCccceEEEEE-e-------------------C---CeEEE
Q 041325 321 SGACDRSILVWERDQ---GNYIVDGDDDSGHMVLKGALRGHTKAILCLAV-V-------------------S---NLLFS 374 (450)
Q Consensus 321 ~g~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-------------------~---~~l~s 374 (450)
+|+..|.+.+|.+.- +... .........+.++|..+.. + + +-++.
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~---------v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFS---------VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EE---------EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EEeCCCCEEEEEEecCCCCceE---------EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 999999999998752 1111 1111222234455544442 1 0 12333
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
...+..+|++...+. +.........-....+.+.+-.. ...+..|++-..+|.|+++.|
T Consensus 231 vvSe~~irv~~~~~~--------k~~~K~~~~~~~~~~~~vv~~~~--------~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 231 VVSESDIRVFKPPKS--------KGAHKSFDDPFLCSSASVVPTIS--------RNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp EE-SSEEEEE-TT-----------EEEEE-SS-EEEEEEEEEEEE---------EEEEEEEEEEETTSEEEEEET
T ss_pred EEcccceEEEeCCCC--------cccceeeccccccceEEEEeecc--------cCCceEEEEEECCCcEEEEEC
Confidence 444667999988764 22222222222333444432000 001227888889999999865
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.012 Score=54.04 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=45.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEE
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRI 383 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~i 383 (450)
.+++..|+.||++++++.-..+|.+.+....-.+.+.+.+. . -......+.|.|+-.+....+..|.+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-----------~-~~~~p~~~~WCG~dav~l~~~~~l~l 283 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT-----------D-SKSPPKQMAWCGNDAVVLSWEDELLL 283 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec-----------C-cCCCCcEEEEECCCcEEEEeCCEEEE
Confidence 46899999999999999999999999988765544422111 1 23345678888763222223445555
Q ss_pred ee
Q 041325 384 WR 385 (450)
Q Consensus 384 wd 385 (450)
..
T Consensus 284 vg 285 (410)
T PF04841_consen 284 VG 285 (410)
T ss_pred EC
Confidence 54
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0085 Score=52.06 Aligned_cols=247 Identities=17% Similarity=0.170 Sum_probs=128.2
Q ss_pred eCCEEEEeeCCCcEEEecC-CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeE
Q 041325 84 AGKLLYGGSSNGEIRAWNR-DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
.++.|+.|+.+| +.+++. ........ .+...|..+...++. ++..-.|+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i--------------~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI--------------LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE--------------eecceEEEEEEecccCEEEEEcCCccEEEEchhhcccc
Confidence 688999999998 899988 22222222 223349999998866 4444456999999998764321
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE--EccCCCEEEEEeCCCcEEEEec
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA--LSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
......... .. ...........+...+ -...+...++......|.+|..
T Consensus 71 ~~~~~~~~~-----~~------------------------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~ 121 (275)
T PF00780_consen 71 TSAPLAFPK-----SR------------------------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEW 121 (275)
T ss_pred ccccccccc-----cc------------------------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEE
Confidence 110000000 00 0000001222344444 1123333333444558888877
Q ss_pred CCC-----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc----chhhhhHhhcccceEEE
Q 041325 240 SDF-----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK----HSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 240 ~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~i~~l 310 (450)
... +..+++. ....+.+++|. ++ .++.|..+ ...+.|+.++....-.. ............++..+
T Consensus 122 ~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~-~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 195 (275)
T PF00780_consen 122 NDPRNSFSKLLKEIS--LPDPPSSIAFL--GN-KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIF 195 (275)
T ss_pred ECCcccccceeEEEE--cCCCcEEEEEe--CC-EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEE
Confidence 653 4555554 56889999998 34 66666654 47888987654211000 00000111112233334
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCc
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
... ++.+|++- |..-...|. .|+.. ....+.- .....++++...+|++.+.+ .|.||++.++
T Consensus 196 ~~~-~~e~Ll~~--~~~g~fv~~-~G~~~-----------r~~~i~W-~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~- 257 (275)
T PF00780_consen 196 QLS-DNEFLLCY--DNIGVFVNK-NGEPS-----------RKSTIQW-SSAPQSVAYSSPYLIAFSSN-SIEVRSLETG- 257 (275)
T ss_pred EeC-CceEEEEe--cceEEEEcC-CCCcC-----------cccEEEc-CCchhEEEEECCEEEEECCC-EEEEEECcCC-
Confidence 443 45666543 222223333 33211 0011111 23456788887888887765 4999999985
Q ss_pred cccCCCceeEEEecC
Q 041325 391 TDHQKGYSCLAVLEG 405 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~ 405 (450)
+.++.+..
T Consensus 258 -------~lvQ~i~~ 265 (275)
T PF00780_consen 258 -------ELVQTIPL 265 (275)
T ss_pred -------cEEEEEEC
Confidence 55666553
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.013 Score=53.85 Aligned_cols=209 Identities=6% Similarity=-0.002 Sum_probs=108.3
Q ss_pred ccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
..++++.++.... +.|.++.| +...|+.-..||.++++|+.... ... ..... ....-....+....+..++
T Consensus 68 ~sG~ll~~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fs--l~~~i---~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 68 SSGKLLSSIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFS--LGEEI---EEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred CCCCEeEEEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eec--hhhhc---cccCcccccccccccCCCC
Confidence 4456777777544 89999999 67788888899999999986443 111 00000 0011112233344455566
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCccccc-----ceeeeee--ccCCCcceeEeeecCceEE-EeecceeeeecCCC
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK-----YYERIAT--LPTLNDRFTKCFLANNYVQ-VRRHKKCTWVHHVD 211 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 211 (450)
++.-..++.+.+-+--..... .......+.. ....... .........+....+..+. +....... ....+
T Consensus 140 ivvLt~~~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-i~~~~ 217 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-IDSDG 217 (410)
T ss_pred EEEECCCCeEEEEeCccccch-hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-ccCCC
Confidence 555555555544432221100 0000000000 0000000 0111111122222222222 22111101 12246
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
++..|+.||+++++|.-..+|.+.+.+..-.+....+..........+.|+ ++..++..- ...+.++.
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC--G~dav~l~~-~~~l~lvg 285 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC--GNDAVVLSW-EDELLLVG 285 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE--CCCcEEEEe-CCEEEEEC
Confidence 899999999999999999999999998776777777764545677888888 443333333 34555554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00044 Score=65.35 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=55.7
Q ss_pred eEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEE
Q 041325 78 IPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~ 153 (450)
+++++| ..-.|+.|-.-|.+.+|+..+.+.... ...|..+|..+.|++++ ++++..-|.|.+|.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv------------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV------------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeee------------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 556888 466788888899999999877664333 45799999999999887 99999999999999
Q ss_pred cCCC
Q 041325 154 IDNN 157 (450)
Q Consensus 154 ~~~~ 157 (450)
.+..
T Consensus 130 ~d~~ 133 (1416)
T KOG3617|consen 130 YDVI 133 (1416)
T ss_pred eeec
Confidence 8743
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0034 Score=55.87 Aligned_cols=214 Identities=15% Similarity=0.185 Sum_probs=121.3
Q ss_pred CCccceeeeEEeecCCCcceEEEEE---e------CCEEEEeeC----------CCcEEEecCCCC-----CceeeeecC
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI---A------GKLLYGGSS----------NGEIRAWNRDPN-----NYVNITSTD 114 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~---d------~~~l~tgs~----------dg~v~vw~~~~~-----~~~~~~~~~ 114 (450)
...+.+.+.++.+.. ...+.+++. . ..+|+.|+. .|.|.++++... ++...
T Consensus 8 d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i---- 82 (321)
T PF03178_consen 8 DPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI---- 82 (321)
T ss_dssp ETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE----
T ss_pred eCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE----
Confidence 334456667777654 344555444 2 467887753 288999998874 22111
Q ss_pred CCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCc-eeEEeccCcccccceeeeeeccCCCcceeEeeecC
Q 041325 115 VGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNT-SAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLAN 193 (450)
Q Consensus 115 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (450)
.-....++|++++-..+.|+.+. .+.|.+|++...+ .. ....
T Consensus 83 -------~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~--------------~~~~--------------- 125 (321)
T PF03178_consen 83 -------HSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLL--------------KKAF--------------- 125 (321)
T ss_dssp -------EEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEE--------------EEEE---------------
T ss_pred -------EEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccch--------------hhhe---------------
Confidence 22345689999999887755544 4899999999873 10 0000
Q ss_pred ceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-CeEEEEe-ecccccceEEEEEeecCCcEEEE
Q 041325 194 NYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD-FRCLESV-KNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
....-.+.++... +++++.|.....+.++..+. ...+..+ +......+.++.+.++++ .+++
T Consensus 126 -------------~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 126 -------------YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp -------------E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE
T ss_pred -------------ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE
Confidence 0112245555544 66999999888888775443 3323333 323456788888886554 8999
Q ss_pred EcCCCcEEEEeCcchhhhccc---cchhhhhHhhcccceEEE---EEcC--CCC------EEEEeeCCCcEEEE
Q 041325 272 GSADTKIKVWKKLRAALQVNK---KHSLVQTLEKHKSAVTAL---ALST--DGT------VLYSGACDRSILVW 331 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~i~~l---~~~~--~~~------~l~~g~~dg~i~vw 331 (450)
+..+|.+.++........... .......+. ....|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 190 ~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 190 GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999999987532111011 111112221 23556666 4444 122 47888889988844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.03 Score=54.67 Aligned_cols=161 Identities=14% Similarity=0.201 Sum_probs=95.7
Q ss_pred cEEEEecCCCeEEEEeecccccc---eEEEEEeecCCcEEEEEcC----------CCcEEEEeCcchhhhccccchhhhh
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDA---INAIVVSKSNDGFVYTGSA----------DTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.++++|-++.+.+...+...... +.++.|..+.+.++++|+. .|.|.++.+.... ..+.+..
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-----~L~~v~e 825 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-----SLELVAE 825 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-----ceeeeee
Confidence 47788888877766554333333 4444577655667777653 5778888876521 1112222
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE--eCCeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 377 (450)
.. -++.+.++..- +|+++|. -+..|++|++.+.+.+ +.-..+..++..+.. .++.++.|.-
T Consensus 826 ~~-v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eL-------------r~e~~~~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 826 TV-VKGAVYALVEF-NGKLLAG--INQSVRLYEWTTEREL-------------RIECNISNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred ee-eccceeehhhh-CCeEEEe--cCcEEEEEEcccccee-------------hhhhcccCCeEEEEEEecCcEEEEeec
Confidence 22 22344444322 6776654 4578999999877544 344455566655554 5899999998
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
-+.+.+...+.. +.....+ .-..+....+++.+-.+..
T Consensus 889 m~Sitll~y~~~----eg~f~ev-ArD~~p~Wmtaveil~~d~ 926 (1096)
T KOG1897|consen 889 MRSITLLQYKGD----EGNFEEV-ARDYNPNWMTAVEILDDDT 926 (1096)
T ss_pred cceEEEEEEecc----CCceEEe-ehhhCccceeeEEEecCce
Confidence 888877766542 1112222 2234677888888877665
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0018 Score=45.68 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=69.3
Q ss_pred eEEEEEcc---CC-CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 213 VSALALSS---DG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 213 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
|++|++.. +| +.|++|+.|..|++|+-. +.+.++. ..+.|.++.-. ....++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~Rl- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSL--GGGRFAYALANGTVGVYDRSQRL- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEc--CCCEEEEEecCCEEEEEeCccee-
Confidence 56666654 32 579999999999999864 5667775 56778888877 45689999999999999853321
Q ss_pred hccccchhhhhHhhcccceEEEEEcC-CC---CEEEEeeCCCcEE
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALST-DG---TVLYSGACDRSIL 329 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~-~~---~~l~~g~~dg~i~ 329 (450)
...+ .+..++++++.. ++ .-|++|-.+|.|-
T Consensus 75 ---------WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 ---------WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---------eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1222 234466666543 32 3688888888774
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0059 Score=49.82 Aligned_cols=108 Identities=10% Similarity=0.059 Sum_probs=80.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
..+++.|+..+.+.-.|..+|+...+-. ....+.+-+.. -+++++.|+..|.+++.+..++. ....+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs--------~~w~f~ 90 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGS--------QIWNFV 90 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchh--------heeeee
Confidence 5678889999999999999998876654 44555554444 23489999999999999998875 333333
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
....--......+++.++..|+.|++.+..|.++..+++.
T Consensus 91 ~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 2222223345667899999999999999999999887754
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0079 Score=56.46 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=52.0
Q ss_pred ccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCe
Q 041325 304 KSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNT 380 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~ 380 (450)
......++++|||+++++++. +.+|.|+|+.+.+..+...-+...... .+..--.++ ...+|++ +...|-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv-aevevGlGP-LHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV-AEPELGLGP-LHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE-EeeccCCCc-ceEEECCCCCEEEeEeecce
Confidence 455688999999998877654 899999999986643221111111111 111111122 3455664 47777888999
Q ss_pred EEEeeCCC
Q 041325 381 IRIWRRSS 388 (450)
Q Consensus 381 v~iwd~~~ 388 (450)
|..||+..
T Consensus 398 v~kwn~~~ 405 (635)
T PRK02888 398 IVKWNIEA 405 (635)
T ss_pred eEEEehHH
Confidence 99999886
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.2e-05 Score=58.86 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=88.7
Q ss_pred EEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
.+...+.||.|+-++++..+. ..+....+......+. -+..+++|+.+|.|++|.....-..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~-------s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~-------- 93 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKE-------SCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAH-------- 93 (238)
T ss_pred hhccccCCcccccchhhhhhh-------hhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchH--------
Confidence 466677889998888865441 1111111222212222 3567999999999999988721100
Q ss_pred ceeeeccccCCccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC-cceEEEEEEecCCCCC
Q 041325 348 HMVLKGALRGHTKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR-RPVKCLTAVVDSDYSN 423 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~ 423 (450)
......-...|.++... +.+..+++.||.||.|++... +.+.....|. .++..+..+..++
T Consensus 94 ----~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--------k~~g~~g~h~~~~~e~~ivv~sd~--- 158 (238)
T KOG2444|consen 94 ----SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--------KVLGYVGQHNFESGEELIVVGSDE--- 158 (238)
T ss_pred ----HHhhhcccccceeccccccccceeEEeccCCceeeeccccC--------ceeeeeccccCCCcceeEEecCCc---
Confidence 01112222344444444 238899999999999998853 5666666777 6677776666666
Q ss_pred CCCCCCCceEEEEEc--ccCCcEEEEEeC
Q 041325 424 RNSDHSSTSFLVYSG--SLDCEIKIWQIR 450 (450)
Q Consensus 424 ~~~~~~~~~~~l~s~--~~Dg~i~iw~l~ 450 (450)
+++.+ |.|..++.|+|+
T Consensus 159 ----------~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 159 ----------FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ----------eEEeeccccchhhhhcchh
Confidence 78888 888899999874
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.017 Score=48.39 Aligned_cols=197 Identities=11% Similarity=0.076 Sum_probs=103.8
Q ss_pred cCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+-...+..++|+|+.+ ++++....+.|..++. +|+.+..+.....+....|++.. ++.++++.-.++.+.++++...
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence 4555799999999755 6666677888888887 57888888755557788999983 3334555556899999988443
Q ss_pred hhhccccc-h--hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc---ccCCcc
Q 041325 287 ALQVNKKH-S--LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA---LRGHTK 360 (450)
Q Consensus 287 ~~~~~~~~-~--~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 360 (450)
........ . .+.....++..+-.++|+|.++.|+.+-+..-..+|.+.... ............ ......
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-----GGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT------SS--EEEE-HHHH-HT--SS
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-----Cccceeeccccccccccceec
Confidence 21110100 0 111112456678999999988888888777667777766411 000000000011 122334
Q ss_pred ceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEE--EecC-C------CcceEEEEEEecCC
Q 041325 361 AILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA--VLEG-H------RRPVKCLTAVVDSD 420 (450)
Q Consensus 361 ~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~-h------~~~v~~l~~~~~~~ 420 (450)
.+.++++++. +++....+..|..+|..- +.+. .+.. . -...-.|+|.++|.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G---------~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQG---------RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT-----------EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCC---------CEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 5788888854 777888888999998552 2332 2222 1 12467899999887
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.022 Score=49.52 Aligned_cols=118 Identities=11% Similarity=0.198 Sum_probs=71.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe-------------ecccccceEEEE-EeecCCcEEEEEcCCCc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV-------------KNAHDDAINAIV-VSKSNDGFVYTGSADTK 277 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~ 277 (450)
.|..+...++-+.+++-+ |+.+.++++........- .......+...+ .........++......
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 488899988777777665 599999998865544311 112233444444 11222333444444558
Q ss_pred EEEEeCcchhhhccccc-hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 278 IKVWKKLRAALQVNKKH-SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
|.+|...... ... ...+++. ....+..++|. ++.|+.|..++ ..+.|+.++..
T Consensus 116 i~i~~~~~~~----~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 116 ILIYEWNDPR----NSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred EEEEEEECCc----ccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence 9998876532 111 2333333 34778899998 56777777554 77889986653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00011 Score=41.40 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=33.6
Q ss_pred eeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.+...+..|...|.++.|.+++. ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-------------YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-------------EEEEecCCCeEEEcC
Confidence 45666778999999999999888 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.025 Score=49.30 Aligned_cols=142 Identities=12% Similarity=0.165 Sum_probs=85.4
Q ss_pred ceEEEEEccCCCEEEEEeC---------CCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 212 TVSALALSSDGSLLYSTSW---------DRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
..+.+...|+|.+.++... ...-.+|-+. .+..+..+. .+-..-+.|+|+|+++.++++=+..+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-CcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 4566777777775554332 0111344444 455555554 4566779999999887677777777889988
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-cEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
++.......... .....+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+ ....-...
T Consensus 191 ~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~-------------~~i~lP~~ 255 (307)
T COG3386 191 DLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL-------------GEIKLPVK 255 (307)
T ss_pred ecCcccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE-------------EEEECCCC
Confidence 875311000011 11112222345566778888888776555554 89999988 6655 33333336
Q ss_pred ceEEEEEeC
Q 041325 361 AILCLAVVS 369 (450)
Q Consensus 361 ~v~~~~~~~ 369 (450)
.+++++|.+
T Consensus 256 ~~t~~~FgG 264 (307)
T COG3386 256 RPTNPAFGG 264 (307)
T ss_pred CCccceEeC
Confidence 678888876
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=40.50 Aligned_cols=37 Identities=35% Similarity=0.619 Sum_probs=32.2
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEec
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWN 101 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~ 101 (450)
.++...+. +|...|.++.+ ++.++++++.||.+++|+
T Consensus 2 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK--GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE--ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667777 89999999999 478999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00036 Score=63.73 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=73.6
Q ss_pred CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
..|.-+.|+|.. +|.+..+|.|.+..+.- +++.++|.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----------------qRlwtip~------------------------ 59 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-----------------QRLWTIPI------------------------ 59 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc-----------------ceeEeccC------------------------
Confidence 467888999887 89999999999988873 45555553
Q ss_pred eecCCCceE-EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEe
Q 041325 206 WVHHVDTVS-ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262 (450)
Q Consensus 206 ~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 262 (450)
|...++ +++|.|||+.++.|-.||+|++.|++++..+..........|.++-|.
T Consensus 60 ---p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 60 ---PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ---CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence 334555 999999999999999999999999999988877543466778888886
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.01 Score=41.99 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=66.1
Q ss_pred eEEEEEcC---CC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeE
Q 041325 307 VTALALST---DG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTI 381 (450)
Q Consensus 307 i~~l~~~~---~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v 381 (450)
|++|++.. || +.|++|+.|..|++|+-.. ....+.. ...|+++... +..++.+..+|+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---------------~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTV 65 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---------------IVAEITE-TDKVTSLCSLGGGRFAYALANGTV 65 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---------------EEEEEec-ccceEEEEEcCCCEEEEEecCCEE
Confidence 56666654 32 5899999999999998663 1223332 3556666665 5689999999999
Q ss_pred EEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
-+|+-.. .+...+... .++++.+..-.. .+..-|++|=.+|.|-
T Consensus 66 GvY~~~~----------RlWRiKSK~-~~~~~~~~D~~g---------dG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQ----------RLWRIKSKN-QVTSMAFYDING---------DGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcc----------eeeeeccCC-CeEEEEEEcCCC---------CCceEEEEEecCCeEE
Confidence 9998652 233333323 366665543321 1223688888888764
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.091 Score=49.77 Aligned_cols=108 Identities=12% Similarity=0.202 Sum_probs=62.0
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE------------------cCCCcEEEEeCcc
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG------------------SADTKIKVWKKLR 285 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~------------------~~dg~i~vwd~~~ 285 (450)
.++.++.+|.+...|.++|+.+-..... ...+...| +.++.+ ..+|.+.-.|+.+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 5778889999999999999988776521 11122222 222221 2356777778777
Q ss_pred hhhhccccchhhhhHhhcccce--EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 286 AALQVNKKHSLVQTLEKHKSAV--TALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i--~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
++..-................. ..+.. .+..|++++.||.|+.+|..+|+.+.
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceee
Confidence 6621100000000000000111 12222 56789999999999999999998774
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.015 Score=56.70 Aligned_cols=100 Identities=12% Similarity=0.230 Sum_probs=70.9
Q ss_pred EEEEEeCCCcEEEEecCCCe--EEEE-e-ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 224 LLYSTSWDRTFKIWRTSDFR--CLES-V-KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~--~~~~-~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
..+.|-.++.+..||.+-.. .+.. . .-.......|++-. .+++||+|+.+|.||+||-. +. .....
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~-g~-------~AKT~ 613 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRL-GK-------RAKTA 613 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeeccc-ch-------hhhhc
Confidence 45667778999999998532 2211 1 11234456666666 78899999999999999942 21 13444
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
+.+...+|..|..+.||++|++.+ +..|.+++..
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 556789999999999999998766 5667787763
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00049 Score=62.86 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=62.6
Q ss_pred ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE-EEEEcCCCCEEEEeeCCCcEEEE
Q 041325 253 DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT-ALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 253 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
...+..+.|+|..+ ++|.+..+|.|.+..+. +..+.++..+...++ +++|.|||++|++|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n---------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN---------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec---------cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 35678899998554 89999999999888764 224555655666666 99999999999999999999999
Q ss_pred EcCCCcee
Q 041325 332 ERDQGNYI 339 (450)
Q Consensus 332 d~~~~~~~ 339 (450)
|..++..+
T Consensus 90 Dve~~~~l 97 (665)
T KOG4640|consen 90 DVEKGGRL 97 (665)
T ss_pred EccCCCce
Confidence 99988765
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0089 Score=53.95 Aligned_cols=111 Identities=12% Similarity=0.198 Sum_probs=73.0
Q ss_pred eEEEEEccCCC-------EEEEEeCCCcEEEEecCCCeE--EEEee---cccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 213 VSALALSSDGS-------LLYSTSWDRTFKIWRTSDFRC--LESVK---NAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 213 v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
|+-+.+.|+.+ .-+.|-.|..|.-||.+-... +...+ -.....-.|.+-. .++++++|+.+|.||+
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRL 455 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEe
Confidence 55555555432 123466788899999873221 11111 0122334555544 7889999999999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
||-.... ....+.+...+|..+..+.+|++|++.+ +..+.+.++.
T Consensus 456 Ydri~~~--------AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 456 YDRIGRR--------AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ehhhhhh--------hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 9962222 4445677888999999999999988665 5667777764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.045 Score=52.53 Aligned_cols=230 Identities=14% Similarity=0.224 Sum_probs=125.5
Q ss_pred eCCEEEEeeCCC------cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCC-C-----eEE
Q 041325 84 AGKLLYGGSSNG------EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQD-H-----KIR 150 (450)
Q Consensus 84 d~~~l~tgs~dg------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-g-----~i~ 150 (450)
.+.+++.|+.++ .+..+|..+++....... .....-.+++..++. .++||.| | ++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-----------~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-----------PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-----------CcccccccEEEECCEEEEEccccCCCcccceEE
Confidence 466667777763 577888887754443221 122334566666666 7788888 2 355
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
.||....+= ..+..+... .+.-.+. .-+|.+.++|+.
T Consensus 353 ~YD~~~~~W--------------~~~a~M~~~-------------------------R~~~~v~----~l~g~iYavGG~ 389 (571)
T KOG4441|consen 353 RYDPRTNQW--------------TPVAPMNTK-------------------------RSDFGVA----VLDGKLYAVGGF 389 (571)
T ss_pred EecCCCCce--------------eccCCccCc-------------------------cccceeE----EECCEEEEEecc
Confidence 666665520 111111100 0111111 125778888888
Q ss_pred CCc-----EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC------cEEEEeCcchhhhccccchhhhh
Q 041325 231 DRT-----FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT------KIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 231 dg~-----i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
||. +..||..+.+--..- .............-++.+.++|+.++ .+..||..++.+ ..+..
T Consensus 390 dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W------~~~~~ 461 (571)
T KOG4441|consen 390 DGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW------TLIAP 461 (571)
T ss_pred ccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce------eecCC
Confidence 864 667777664422111 11122233333332566777777554 567888877653 23333
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCc-----EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEE
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRS-----ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFS 374 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 374 (450)
+...........+ ++.+.+.|+.|+. |..||..+.+.. ....+......+-.....+...+.
T Consensus 462 M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-----------~v~~m~~~rs~~g~~~~~~~ly~v 528 (571)
T KOG4441|consen 462 MNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWT-----------MVAPMTSPRSAVGVVVLGGKLYAV 528 (571)
T ss_pred cccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCcee-----------EcccCccccccccEEEECCEEEEE
Confidence 3332333332333 6788888887763 677888776543 333344444555555666778888
Q ss_pred EeCCC-----eEEEeeCCC
Q 041325 375 GSSDN-----TIRIWRRSS 388 (450)
Q Consensus 375 ~~~dg-----~v~iwd~~~ 388 (450)
|+.|| +|..||..+
T Consensus 529 GG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 529 GGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ecccCccccceeEEcCCCC
Confidence 88776 366676664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00022 Score=67.31 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=86.1
Q ss_pred ceEEEEEccCCCEEEEEe----CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 212 TVSALALSSDGSLLYSTS----WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
.-+-..|+|...++++++ ..|.|.||- ++|++...+. .+-.+.+++|+| ..-.|+.|-.-|.+.+|...+.+
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccCh-HHHHHhhccccceeEEEecCCce
Confidence 344567999999988876 467888874 4566555443 344567899998 44468888889999999976655
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
.......|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 93 --------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 --------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 334445689999999999999999999999999999876
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0092 Score=57.20 Aligned_cols=187 Identities=7% Similarity=0.116 Sum_probs=95.1
Q ss_pred CCCEEEEEeCC------CcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCC-----cEEEEeCcchhh
Q 041325 221 DGSLLYSTSWD------RTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADT-----KIKVWKKLRAAL 288 (450)
Q Consensus 221 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 288 (450)
++.+.+.|+.+ ..+..||..+.+-. .+.. .....-.+++.. ++.+.+.|+.++ .+..||..+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56667777743 34778888766422 1110 111111233333 565777787654 477899876542
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-----------------------cEEEEEcCCCceeeeCCCC
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-----------------------SILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-----------------------~i~vwd~~~~~~~~~~~~~ 345 (450)
. .+..+.........+.+ +|++.+.|+.++ .+..||..+.+..
T Consensus 380 ~------~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~------ 445 (557)
T PHA02713 380 K------MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE------ 445 (557)
T ss_pred E------ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe------
Confidence 2 22222222222222333 677777777653 3666777665432
Q ss_pred CCceeeeccccCCccceEEEEEeCCeEEEEeCC------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecC
Q 041325 346 SGHMVLKGALRGHTKAILCLAVVSNLLFSGSSD------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
....+.............+...+.|+.+ ..+..||..+ ...|..+..+.........+.+ ++
T Consensus 446 -----~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~-----~~~W~~~~~m~~~r~~~~~~~~--~~ 513 (557)
T PHA02713 446 -----TLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT-----YNGWELITTTESRLSALHTILH--DN 513 (557)
T ss_pred -----ecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC-----CCCeeEccccCcccccceeEEE--CC
Confidence 1122211111222334456666666654 2467788774 0246655555443333333332 44
Q ss_pred CCCCCCCCCCCceEEEEEcccCC--cEEEEEe
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDC--EIKIWQI 449 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg--~i~iw~l 449 (450)
. +.+.||.|| .+..||.
T Consensus 514 ~-------------iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 514 T-------------IMMLHCYESYMLQDTFNV 532 (557)
T ss_pred E-------------EEEEeeecceeehhhcCc
Confidence 4 888999888 5555554
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.16 Score=49.91 Aligned_cols=324 Identities=15% Similarity=0.110 Sum_probs=158.9
Q ss_pred CcceEEEEE----e----CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEEEEe
Q 041325 75 SSYIPSLAI----A----GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLFSAH 144 (450)
Q Consensus 75 ~~~v~~~~~----d----~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~ 144 (450)
...|.|+.+ | .++++.|..+..+.+--.............. ...-...|.-..+-.+ .|.++.
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~-------~~~iPRSIl~~~~e~d~~yLlval 602 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS-------GEIIPRSILLTTFEGDIHYLLVAL 602 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC-------CCccchheeeEEeeccceEEEEEc
Confidence 457888877 2 2378888887766655433222222211000 0011124444455443 399999
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC-CCceEE-EEEcc--
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH-VDTVSA-LALSS-- 220 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~-- 220 (450)
.||.+.-+.++..+...........+.....+.++.........+......+.........+..- -..+.. +.|+.
T Consensus 603 gdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a 682 (1096)
T KOG1897|consen 603 GDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDA 682 (1096)
T ss_pred CCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhccccccc
Confidence 99999888777665433332222222222334444433333333333333332222221111110 001111 12222
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC-----------C---CcEEEEeCcch
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-----------D---TKIKVWKKLRA 286 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------d---g~i~vwd~~~~ 286 (450)
-+..++++. .+.+++--+..-+.+..-.-........+++.+ ....+.+.+. . ..++++|-.+-
T Consensus 683 ~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf 760 (1096)
T KOG1897|consen 683 YPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF 760 (1096)
T ss_pred CCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCce
Confidence 233455544 566777666544333222223445566666664 2223333221 1 13555554332
Q ss_pred hhhccccchhhhhHhhc--ccceEEEEEcCC-CCEEEEeeC----------CCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 287 ALQVNKKHSLVQTLEKH--KSAVTALALSTD-GTVLYSGAC----------DRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~-~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
+. .....+... -..|.++.|..| +.++++|+. .|.|.+|.+...+.+ ....
T Consensus 761 ~v------l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L----------~~v~ 824 (1096)
T KOG1897|consen 761 EV------LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL----------ELVA 824 (1096)
T ss_pred eE------EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce----------eeee
Confidence 20 011111111 123455568777 677888763 477888877763222 1111
Q ss_pred cccCCccceEEEE-EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 354 ALRGHTKAILCLA-VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 354 ~~~~~~~~v~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
... -.+.+.++. |++.++|. -...|++|+..+. +.++.-..|..++..+...-.+.
T Consensus 825 e~~-v~Gav~aL~~fngkllA~--In~~vrLye~t~~--------~eLr~e~~~~~~~~aL~l~v~gd------------ 881 (1096)
T KOG1897|consen 825 ETV-VKGAVYALVEFNGKLLAG--INQSVRLYEWTTE--------RELRIECNISNPIIALDLQVKGD------------ 881 (1096)
T ss_pred eee-eccceeehhhhCCeEEEe--cCcEEEEEEcccc--------ceehhhhcccCCeEEEEEEecCc------------
Confidence 111 124444444 44556554 4567999998863 45555567788888888888888
Q ss_pred EEEEEcccCCcEEEE
Q 041325 433 FLVYSGSLDCEIKIW 447 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw 447 (450)
.++.|.--+.|.+-
T Consensus 882 -eI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 882 -EIAVGDLMRSITLL 895 (1096)
T ss_pred -EEEEeeccceEEEE
Confidence 78888776666553
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.081 Score=48.80 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=105.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKI 149 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i 149 (450)
........+++ +|++++.+ .||.-.|+......... .+.-...+|.++. +++-...++|
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----------------~G~g~~~vw~~~n~yAv~~~~~~I 91 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----------------FGSGLSFVWSSRNRYAVLESSSTI 91 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----------------EEE-SEEEE-TSSEEEEE-TTS-E
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----------------cCceeEEEEecCccEEEEECCCeE
Confidence 44556778888 68888885 56888888733322111 1344567777644 8877778889
Q ss_pred EEE-EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 150 RVW-KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 150 ~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
.++ +++.... ..+. ....+..+-. |.+|...
T Consensus 92 ~I~kn~~~~~~-----------------k~i~----------------------------~~~~~~~If~---G~LL~~~ 123 (443)
T PF04053_consen 92 KIYKNFKNEVV-----------------KSIK----------------------------LPFSVEKIFG---GNLLGVK 123 (443)
T ss_dssp EEEETTEE-TT--------------------------------------------------SS-EEEEE----SSSEEEE
T ss_pred EEEEcCccccc-----------------eEEc----------------------------CCcccceEEc---CcEEEEE
Confidence 996 3432210 0000 0112333322 7777777
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc--cccch-hhhhHhhccc
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV--NKKHS-LVQTLEKHKS 305 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~-~~~~~~~~~~ 305 (450)
+. +.|.+||..+++.+..+. . .+|..+.|+++++ +++..+. ..+.+++........ ..... ..........
T Consensus 124 ~~-~~i~~yDw~~~~~i~~i~--v-~~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~ 197 (443)
T PF04053_consen 124 SS-DFICFYDWETGKLIRRID--V-SAVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISE 197 (443)
T ss_dssp ET-TEEEEE-TTT--EEEEES--S--E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S
T ss_pred CC-CCEEEEEhhHcceeeEEe--c-CCCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecc
Confidence 64 489999999999999986 2 2489999997544 6665554 468887754331000 00000 1111111245
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEE
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRI 383 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~i 383 (450)
.|.+.+|..+ .++-.+.. +|+. +..|+.. .+..-..++.=+.+.+ +.+.....|+.|..
T Consensus 198 ~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~--------------~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 198 RIKSGCWVED--CFIYTTSN-HLKY--LVNGETG--------------IIAHLDKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp --SEEEEETT--EEEEE-TT-EEEE--EETTEEE--------------EEEE-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred eeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc--------------eEEEcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence 6777777644 33333333 5554 3333321 1111123444455555 67777777777777
Q ss_pred eeCC
Q 041325 384 WRRS 387 (450)
Q Consensus 384 wd~~ 387 (450)
+.+.
T Consensus 259 ~~ld 262 (443)
T PF04053_consen 259 YELD 262 (443)
T ss_dssp EE--
T ss_pred EEEC
Confidence 7655
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0088 Score=58.30 Aligned_cols=128 Identities=17% Similarity=0.284 Sum_probs=83.7
Q ss_pred EEEE-EcCCCcEEEEeCcchhhhccccchhhhhHhhcccc-eEEEEEcC-----CCCEEEEeeCCCcEEEEEcCCCc-ee
Q 041325 268 FVYT-GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA-VTALALST-----DGTVLYSGACDRSILVWERDQGN-YI 339 (450)
Q Consensus 268 ~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~-----~~~~l~~g~~dg~i~vwd~~~~~-~~ 339 (450)
+|+. ......|+-.|+..++ .+..+..+... |..++-.. ....-+.|-.+..|..||.+-.. .+
T Consensus 495 mil~~~~~~~~ly~mDLe~GK--------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGK--------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred eEeecCCCCCceEEEecCCCc--------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 4333 3456788999998887 66666655543 44443221 12345667788999999998532 11
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
... .... -.......|++-.++ +||.|+.+|.||+||--. ......+.+-..+|.+|..+.|
T Consensus 567 v~~--------~~k~-Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g--------~~AKT~lp~lG~pI~~iDvt~D 629 (794)
T PF08553_consen 567 VDS--------QSKQ-YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLG--------KRAKTALPGLGDPIIGIDVTAD 629 (794)
T ss_pred eec--------cccc-cccCCCceEEEecCCceEEEEeCCCcEEeecccc--------hhhhhcCCCCCCCeeEEEecCC
Confidence 100 0011 123345678887765 999999999999999432 2345556677899999999999
Q ss_pred CC
Q 041325 419 SD 420 (450)
Q Consensus 419 ~~ 420 (450)
|+
T Consensus 630 Gk 631 (794)
T PF08553_consen 630 GK 631 (794)
T ss_pred Cc
Confidence 99
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.1 Score=45.39 Aligned_cols=265 Identities=15% Similarity=0.197 Sum_probs=130.0
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEE----------EeCCCeEEEEEcCCCceeEE
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFS----------AHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s----------~~~dg~i~iw~~~~~~~~~~ 162 (450)
+.+.|.|.++++.+-.... +. .-.+..++++ +++ |-....|.+||..+......
T Consensus 17 ~rv~viD~d~~k~lGmi~~-----------g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E 82 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT-----------GF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE 82 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-----------ES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCcEEEEeec-----------cc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce
Confidence 4788888888775543211 11 1223344444 332 33445699999999866443
Q ss_pred eccCc---ccccceeeeeeccCCCcceeE--eeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEE
Q 041325 163 STSGK---LKNKYYERIATLPTLNDRFTK--CFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKI 236 (450)
Q Consensus 163 ~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 236 (450)
..... ...........+.. ++++.. -+.+...+.+-+.....+...-..--|.-.-| ..+-|.+-|.||.+.-
T Consensus 83 I~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 83 IEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLT 161 (342)
T ss_dssp EEETTS-B--BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEE
T ss_pred EecCCcchheecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEE
Confidence 32221 11112222223322 222222 23344444443333222221111111222223 2345888888999998
Q ss_pred EecC-CCeEEEEee---cccccceE-EEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh----cccce
Q 041325 237 WRTS-DFRCLESVK---NAHDDAIN-AIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK----HKSAV 307 (450)
Q Consensus 237 wd~~-~~~~~~~~~---~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~i 307 (450)
..+. .|+...... .....++. .-++.. ..+.++--+.+|.|+--|+..........+.....-.. ..+.-
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 8887 455432221 11222222 222332 33345557788988888876655333333333221111 12344
Q ss_pred EEEEEcCCCCEEEEeeC--------C--CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEE
Q 041325 308 TALALSTDGTVLYSGAC--------D--RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFS 374 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~--------d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s 374 (450)
.-+++++..+.|++--. | ..|-++|+.+++.+. .+.. ..++.+|..+.+ +|++
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-------------Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-------------RIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-------------EEEE-EEEESEEEEESSSS-EEEE
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE-------------EEeC-CCccceEEEccCCCcEEEE
Confidence 55788876666555322 1 147788888887662 2221 234667888733 5554
Q ss_pred -EeCCCeEEEeeCCCC
Q 041325 375 -GSSDNTIRIWRRSSS 389 (450)
Q Consensus 375 -~~~dg~v~iwd~~~~ 389 (450)
...++.+.+||..++
T Consensus 307 ~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATG 322 (342)
T ss_dssp EETTTTEEEEEETTT-
T ss_pred EcCCCCeEEEEeCcCC
Confidence 456899999999986
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.2 Score=47.78 Aligned_cols=188 Identities=8% Similarity=0.069 Sum_probs=92.9
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE-EEEEeCCeEEEEe------CCCeEEEEE
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK-SLVVLGDKLFSAH------QDHKIRVWK 153 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iw~ 153 (450)
+++.+..++.++.||.|...|..+++.+......... ....+. .-....+.++.+. .+|.|..+|
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~--------~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD 187 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYK--------AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYD 187 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeccccccc--------ccccccCCcEEECCEEEEeecccccCCCcEEEEEE
Confidence 3455667778888999999999999977653321100 000111 1122345555554 268999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE-EEEEccCCCEEEEEeCC-
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS-ALALSSDGSLLYSTSWD- 231 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d- 231 (450)
.++++.................. ...... .. ...-+.. ..+..-...+. .+++.++..+++.+..+
T Consensus 188 ~~TG~~lW~~~~~p~~~~~~~~~-~~~~~~-~~--------~~~tw~~--~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp 255 (527)
T TIGR03075 188 AKTGKLVWRRYTVPGDMGYLDKA-DKPVGG-EP--------GAKTWPG--DAWKTGGGATWGTGSYDPETNLIYFGTGNP 255 (527)
T ss_pred CCCCceeEeccCcCCCccccccc-cccccc-cc--------ccCCCCC--CccccCCCCccCceeEcCCCCeEEEeCCCC
Confidence 99996644332211110000000 000000 00 0000000 00000111121 34555555555544311
Q ss_pred ---------------CcEEEEecCCCeEEEEeecccc--------cceEEEEEeecCC--cEEEEEcCCCcEEEEeCcch
Q 041325 232 ---------------RTFKIWRTSDFRCLESVKNAHD--------DAINAIVVSKSND--GFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 232 ---------------g~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~ 286 (450)
..|.-.|+++|+..-.++..+. ....-+....++. ..++.+..+|.+.+.|.+++
T Consensus 256 ~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 256 SPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred CCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 1567778899998887773221 1111122211222 36889999999999999988
Q ss_pred hh
Q 041325 287 AL 288 (450)
Q Consensus 287 ~~ 288 (450)
+.
T Consensus 336 ~~ 337 (527)
T TIGR03075 336 KL 337 (527)
T ss_pred ce
Confidence 74
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.076 Score=51.08 Aligned_cols=146 Identities=6% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCeEEE--EeecccccceEEEEEeecCCcEEEEEcCCC-----------------
Q 041325 221 DGSLLYSTSWDR-----TFKIWRTSDFRCLE--SVKNAHDDAINAIVVSKSNDGFVYTGSADT----------------- 276 (450)
Q Consensus 221 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----------------- 276 (450)
++++.+.||.++ .+..||..+.+=.. .+. ....-.+++.. ++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp--~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP--IALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC--cccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 567777777654 47889987653221 111 11111222222 455677776543
Q ss_pred ------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC------cEEEEEcCC-CceeeeCC
Q 041325 277 ------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR------SILVWERDQ-GNYIVDGD 343 (450)
Q Consensus 277 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg------~i~vwd~~~-~~~~~~~~ 343 (450)
.+..||..+.+. ..+..+.........+.+ ++++.+.|+.++ .+..||..+ .+..
T Consensus 427 ~~~~~~~ve~YDP~td~W------~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~---- 494 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIW------ETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE---- 494 (557)
T ss_pred cccccceEEEECCCCCeE------eecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCee----
Confidence 467788776552 222222211122122222 567777776542 356788776 4422
Q ss_pred CCCCceeeeccccCCccceEEEEEeCCeEEEEeCCC--eEEEeeCCCC
Q 041325 344 DDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDN--TIRIWRRSSS 389 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg--~v~iwd~~~~ 389 (450)
....+.............+...++|+.|| .+..||..+.
T Consensus 495 -------~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 495 -------LITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred -------EccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 22334333344455556677888999888 6778888754
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.14 Score=45.50 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=49.8
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC---CC-cEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---DT-KIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
..|.-.|+.+|+....+. ....+..+.++|.++.+|+-|.. +. .-|||-+++.. ....++.... ....+
T Consensus 168 ~~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg----~~~~~v~~~~-~~e~~ 240 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG----SNVKKVHRRM-EGESV 240 (386)
T ss_dssp EEEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-------EESS----TTEEE
T ss_pred ceEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC----CcceeeecCC-CCccc
Confidence 456667888887655554 56678899999988877766544 22 13667665433 1111222211 23344
Q ss_pred EEEEEcCCCCEEEEee-----CCCcEEEEEcCCCc
Q 041325 308 TALALSTDGTVLYSGA-----CDRSILVWERDQGN 337 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~-----~dg~i~vwd~~~~~ 337 (450)
..=-|.|||..|.--+ .+..|.-+|+.+++
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 4456889988665422 23456667777654
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.11 Score=43.70 Aligned_cols=214 Identities=12% Similarity=0.160 Sum_probs=108.8
Q ss_pred eecCCCcceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEe-
Q 041325 70 KVKGNSSYIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAH- 144 (450)
Q Consensus 70 ~~~~h~~~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~- 144 (450)
.+.+-...+..++|+ +.++++....+.|...+.+ ++.+.... +.+ .+..-.|++.++. ++...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~----------l~g-~~D~EgI~y~g~~~~vl~~E 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP----------LDG-FGDYEGITYLGNGRYVLSEE 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-----------SS--SSEEEEEE-STTEEEEEET
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe----------CCC-CCCceeEEEECCCEEEEEEc
Confidence 344777779999993 4567777778888888865 55554422 223 3567888888666 44444
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.++.+.+.++....... .. .....+. ......++..+-.++|++.++.
T Consensus 84 r~~~L~~~~~~~~~~~~-------~~---~~~~~~~----------------------l~~~~~~N~G~EGla~D~~~~~ 131 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSL-------DR---ADVQKIS----------------------LGFPNKGNKGFEGLAYDPKTNR 131 (248)
T ss_dssp TTTEEEEEEE----TT---------E---EEEEEEE-------------------------S---SS--EEEEEETTTTE
T ss_pred CCCcEEEEEEecccccc-------ch---hhceEEe----------------------cccccCCCcceEEEEEcCCCCE
Confidence 48889999885432100 00 0000000 0000135567899999998887
Q ss_pred EEEEeCCCcEEEEecCC---CeEEEEee-------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 225 LYSTSWDRTFKIWRTSD---FRCLESVK-------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~---~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
|+.+-...-..+|.+.. ...+.... ......+.++.++|..+.+++....+..|..+|. +++.. ...
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~--~~~ 208 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVV--SSL 208 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EE--EEE
T ss_pred EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEE--EEE
Confidence 87787777777776653 21111111 1233467889999988878888888999999984 33310 111
Q ss_pred hhhhhHh---hcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 295 SLVQTLE---KHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 295 ~~~~~~~---~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
.+..... ..-...-.|+|.++|++.++ ++-+..++|
T Consensus 209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp E-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 1111111 11235678999999865554 455555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.17 Score=45.53 Aligned_cols=106 Identities=11% Similarity=0.199 Sum_probs=56.1
Q ss_pred CCcEEEEecCCCeEEEEeeccccc-ceEEEEEeecCCc-E-EEEEcCCCcEEEEeC-cchhhhccc-------------c
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDD-AINAIVVSKSNDG-F-VYTGSADTKIKVWKK-LRAALQVNK-------------K 293 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-~-l~~~~~dg~i~vwd~-~~~~~~~~~-------------~ 293 (450)
..++.+||+.+.+.++.+..+..+ ....|.|..+... . ++.+.-..+|..|-- +.++..... -
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 468999999999999999855444 4667888754432 2 444444455554432 333211100 0
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCC
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQG 336 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~ 336 (450)
...++.+..-..-|+.|..|.|.++|...+ .+|.|+.||+...
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 122333444456789999999999987766 5899999999864
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.081 Score=50.82 Aligned_cols=181 Identities=13% Similarity=0.226 Sum_probs=98.3
Q ss_pred CCCEEEEEeCC------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc-----EEEEeCcchhhh
Q 041325 221 DGSLLYSTSWD------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-----IKVWKKLRAALQ 289 (450)
Q Consensus 221 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~ 289 (450)
++.+.++|+.| ..+..||..+.+=...-.-.....-..++.. ++.+.++|+.||. +-.||..+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~-- 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK-- 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--
Confidence 45778888888 3567788877652221110111112223333 5667889998874 6678876654
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC------cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR------SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+..+..+.........+.+ +|.+.++|+.++ ++..||..+++.. ....+..-.....
T Consensus 408 ----W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-----------~~~~M~~~R~~~g 470 (571)
T KOG4441|consen 408 ----WTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT-----------LIAPMNTRRSGFG 470 (571)
T ss_pred ----ccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee-----------ecCCcccccccce
Confidence 2233333322233333333 688888888654 4677888776543 2222222222223
Q ss_pred EEEEeCCeEEEEeCCCe-----EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 364 CLAVVSNLLFSGSSDNT-----IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
....++.+.+.|+.|+. |..||..+. .+..+..+......+..+.+ ++. +.+.|
T Consensus 471 ~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~------~W~~v~~m~~~rs~~g~~~~--~~~-------------ly~vG 529 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDGTSALSSVERYDPETN------QWTMVAPMTSPRSAVGVVVL--GGK-------------LYAVG 529 (571)
T ss_pred EEEECCEEEEECCccCCCccceEEEEcCCCC------ceeEcccCccccccccEEEE--CCE-------------EEEEe
Confidence 44455667788887763 677887753 34555444333333222222 233 78888
Q ss_pred ccCCc
Q 041325 439 SLDCE 443 (450)
Q Consensus 439 ~~Dg~ 443 (450)
+.||.
T Consensus 530 G~~~~ 534 (571)
T KOG4441|consen 530 GFDGN 534 (571)
T ss_pred cccCc
Confidence 88875
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.034 Score=52.46 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=78.2
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC-----CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSD-----FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.++|++... .++.|.+.|..+ .+.+..+. -......+.++|++..+++++..++.|.++|+.+.+......
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 346776665 367899999998 45555554 567789999999888778888889999999997754211111
Q ss_pred c----hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 294 H----SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 294 ~----~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
. ....+..- .......+|.++|+...+-.-|..|..|++..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0 01111111 22335678999999888888999999999876
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.034 Score=54.77 Aligned_cols=72 Identities=19% Similarity=0.408 Sum_probs=53.7
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEee-c-CCcEEEEEcCCCcEEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK-S-NDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~l~~~~~dg~i~vwd~ 283 (450)
-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+. .+..+...+-+.- . +...++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 45689999999999999999999999999999988888877 4555544443321 1 2225777777776 5654
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.34 Score=46.30 Aligned_cols=76 Identities=9% Similarity=0.102 Sum_probs=48.3
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
.+..++.++.++.|+-.|..+++.+............. ...+...-..+++..+.++.++.|+.|...|.++++..
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~-~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIP-VMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCccccc-ccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE
Confidence 46677778888999999999998777644322110000 00000001224556677888999999999999998543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0031 Score=37.03 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
...|..++|+|..++||.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.034 Score=50.40 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=84.1
Q ss_pred EEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-------EEEEeeCCCcEEEEEcCCCce-e
Q 041325 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-------VLYSGACDRSILVWERDQGNY-I 339 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-------~l~~g~~dg~i~vwd~~~~~~-~ 339 (450)
++..+.....++-.|++.++ .+..+..+.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... .
T Consensus 348 il~~~~~~~~l~klDIE~GK--------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK--------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred EeeCCCCcCcceeeecccce--------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 45566666778888998887 6666665544 77777777543 223466788899999883211 1
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
+. ......+. ....-.|++-.++ +|+.||.+|-||+||.- + ......+.+-..+|..|..+.+
T Consensus 419 l~-------~~q~kqy~-~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~-------~~AKTAlPgLG~~I~hVdvtad 482 (644)
T KOG2395|consen 419 LA-------VVQSKQYS-TKNNFSCFATTESGYIVVGSLKGDIRLYDRI-G-------RRAKTALPGLGDAIKHVDVTAD 482 (644)
T ss_pred ee-------eeeccccc-cccccceeeecCCceEEEeecCCcEEeehhh-h-------hhhhhcccccCCceeeEEeecc
Confidence 00 00001111 1233456665554 99999999999999973 2 2445567788899999999999
Q ss_pred CC
Q 041325 419 SD 420 (450)
Q Consensus 419 ~~ 420 (450)
|+
T Consensus 483 GK 484 (644)
T KOG2395|consen 483 GK 484 (644)
T ss_pred Cc
Confidence 99
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.19 Score=40.74 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=83.4
Q ss_pred ceEEEEEccCCCEEEEEeCC---------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 212 TVSALALSSDGSLLYSTSWD---------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
+.+.-..+|+|++++-.-.| |.++.|-.. ..+..+. ..-.--+.++|..+...+.++-+.+-.|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeee-hhccCCccccccccCcEEEEEccCceEEeeee
Confidence 45666778899884422222 334444332 1122222 12233467888866666777888888887787
Q ss_pred --CcchhhhccccchhhhhHhh----cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 283 --KLRAALQVNKKHSLVQTLEK----HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 283 --~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
..++.....+ .+..++. ..-..-.++...+|++.++.-..++|...|..+|+.+ ..+.
T Consensus 187 yd~~tG~~snr~---~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L-------------~eik 250 (310)
T KOG4499|consen 187 YDCPTGDLSNRK---VIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL-------------LEIK 250 (310)
T ss_pred cCCCcccccCcc---eeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE-------------EEEE
Confidence 4444421111 1111111 1112234556668899999989999999999999977 3444
Q ss_pred CCccceEEEEEeCC
Q 041325 357 GHTKAILCLAVVSN 370 (450)
Q Consensus 357 ~~~~~v~~~~~~~~ 370 (450)
-....|++++|.|.
T Consensus 251 lPt~qitsccFgGk 264 (310)
T KOG4499|consen 251 LPTPQITSCCFGGK 264 (310)
T ss_pred cCCCceEEEEecCC
Confidence 44778999999865
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.24 Score=41.60 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=77.0
Q ss_pred ceEEEEEccCCCEEEEEeCCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 212 TVSALALSSDGSLLYSTSWDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
-...+.|..++.++-+.+.-| .|+.+|+.+++..........---..++.. ++.+....-.++...+||..+-+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~-- 121 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK-- 121 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE--
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce--
Confidence 346788877888888877655 799999999998877664444455666666 66677777889999999986544
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.+..+. ....=+.++. |++.|+.......|+.+|..+.+..
T Consensus 122 ------~~~~~~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 122 ------KIGTFP-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp ------EEEEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred ------EEEEEe-cCCcceEEEc--CCCEEEEECCccceEEECCcccceE
Confidence 333332 2244566773 6777887777888999998876543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0049 Score=36.22 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 244 (450)
....|.+++|+|..+++|.+..+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3457999999999999999999999999998 4443
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0054 Score=60.03 Aligned_cols=95 Identities=17% Similarity=0.317 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
...++.|+..|.+...|+...- .....-..-.++|++++|+.+|.+++.|-.+|.|.+||...++.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL-------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l------ 165 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL-------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL------ 165 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc-------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce------
Confidence 4478999999999998875421 122222335689999999999999999999999999999987755
Q ss_pred CCceeeeccccCCccceEEEEEe----CC-eEEEEeCCCe
Q 041325 346 SGHMVLKGALRGHTKAILCLAVV----SN-LLFSGSSDNT 380 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~----~~-~l~s~~~dg~ 380 (450)
+.+..|..+.+++-+. ++ .++++...|.
T Consensus 166 -------~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 166 -------KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred -------eeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 3344444444443332 33 5777777675
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.003 Score=50.51 Aligned_cols=107 Identities=11% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
-+..+++|+.+|.|.+|+.................|.++.-.-..+.+..+++.||.|+.|++.-.+ .+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k--------~~g~~ 140 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK--------VLGYV 140 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc--------eeeee
Confidence 3556889999999999998732221111112233444443332233488999999999999985544 33333
Q ss_pred hhcc-cceEEEEEcCCCCEEEEe--eCCCcEEEEEcCC
Q 041325 301 EKHK-SAVTALALSTDGTVLYSG--ACDRSILVWERDQ 335 (450)
Q Consensus 301 ~~~~-~~i~~l~~~~~~~~l~~g--~~dg~i~vwd~~~ 335 (450)
..|. ..+.....+..++.+... +.|..++.|++..
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3344 334444444445555555 5566666666553
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.31 Score=41.18 Aligned_cols=177 Identities=12% Similarity=0.071 Sum_probs=110.9
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
+-...+.++.|+|+.+.|++......-.++=..+|+.+.++....-.....|.+.. ++.++++--.++.+.++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCc
Confidence 34445999999999998888887777778777789999988755555667788874 33356666678888887765542
Q ss_pred hhcc--ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 288 LQVN--KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 288 ~~~~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.... ...-.+......+.....++|.|..+.|+.+-+-.=+.||.+............... .....-.-..|.++
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~---~~~~~~f~~DvSgl 238 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP---TADRDLFVLDVSGL 238 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc---ccccceEeeccccc
Confidence 1110 101122222333667889999999998988888777888877643211110000000 00000112346677
Q ss_pred EEe---CCeEEEEeCCCeEEEeeCCC
Q 041325 366 AVV---SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 366 ~~~---~~~l~s~~~dg~v~iwd~~~ 388 (450)
.|+ +.+|+-+.+++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 777 34777777888887777663
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.55 Score=43.62 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred eEEEEEccCCCEEEEE-eCCC----cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC----------Cc
Q 041325 213 VSALALSSDGSLLYST-SWDR----TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----------TK 277 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~ 277 (450)
+....++|++++++.+ +..| .|+++|+++++.+.... .......+.|.+++..++.+...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999988865 3333 59999999998765432 112223399998767666666443 23
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQG 336 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~ 336 (450)
|+.|.+.+.. ....++............+..++|+++|+..... ..+++.++..+
T Consensus 204 v~~~~~gt~~----~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQ----SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-G----GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCCh----HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 6777775544 1111222222222225678899999988764432 35777787754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.2 Score=48.37 Aligned_cols=108 Identities=7% Similarity=0.122 Sum_probs=53.7
Q ss_pred CCCEEEEEeCCC------cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcchhhh
Q 041325 221 DGSLLYSTSWDR------TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLRAALQ 289 (450)
Q Consensus 221 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~ 289 (450)
++.+++.|+.++ .+..||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666666432 567788877654221110111111223333 55577777765 34677887665432
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC------CcEEEEEcCCCce
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD------RSILVWERDQGNY 338 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d------g~i~vwd~~~~~~ 338 (450)
....+.........+. -++++.+.|+.+ ..+..||..+.+.
T Consensus 372 ------~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 372 ------EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred ------eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 1212211111112222 256777777632 3578888887653
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.17 Score=46.87 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=92.8
Q ss_pred cceEEEEE-eCCEEEEee---CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe------EEEEeC
Q 041325 76 SYIPSLAI-AGKLLYGGS---SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK------LFSAHQ 145 (450)
Q Consensus 76 ~~v~~~~~-d~~~l~tgs---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------l~s~~~ 145 (450)
-+|..++| ||+.++-.. .+|.+++=|.. ..|.-.-|..+.|.|-. |++.-.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~-------------------viGqFEhV~GlsW~P~~~~~~paLLAVQH 80 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK-------------------VIGQFEHVHGLSWAPPCTADTPALLAVQH 80 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc-------------------EeeccceeeeeeecCcccCCCCceEEEec
Confidence 47888999 887765432 23444332211 23455678999998643 778888
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEE
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL 225 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 225 (450)
.+.|.+|.+....... .+ .-.-.+....+ ...---..+.|+|....|
T Consensus 81 kkhVtVWqL~~s~~e~----~K-----~l~sQtcEi~e------------------------~~pvLpQGCVWHPk~~iL 127 (671)
T PF15390_consen 81 KKHVTVWQLCPSTTER----NK-----LLMSQTCEIRE------------------------PFPVLPQGCVWHPKKAIL 127 (671)
T ss_pred cceEEEEEeccCcccc----cc-----ceeeeeeeccC------------------------CcccCCCcccccCCCceE
Confidence 8999999987432100 00 00000000000 000012456799988888
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+.-.....-.++++..............+.|.|.+|.+++..++++.+..=.-++||-...
T Consensus 128 ~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 128 TVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 7766555555666654333222222477899999999977777666666667789985443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0013 Score=62.83 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=91.6
Q ss_pred ecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC--CeEEEE----eecccccceEEEEEeecC--CcEEEEEcCCCc
Q 041325 207 VHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSD--FRCLES----VKNAHDDAINAIVVSKSN--DGFVYTGSADTK 277 (450)
Q Consensus 207 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~--~~~~~~----~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~ 277 (450)
++..+.|-.+.|-. +...+. -.-|.+.+||+.- |+.... ........+.-+.|.|-- .-++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 35666777787743 222222 3346788888753 332222 222344555666666532 235777778899
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEE-----------EcCCCCEEEEeeCCCcEEEEEcC-CCceeeeCCCC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA-----------LSTDGTVLYSGACDRSILVWERD-QGNYIVDGDDD 345 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-----------~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~ 345 (450)
+++.+..+.. ...+..|...+..++ .+|||..++.++.||.++.|.+. +++..
T Consensus 207 i~lL~~~ra~---------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~------ 271 (1283)
T KOG1916|consen 207 IRLLNINRAL---------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV------ 271 (1283)
T ss_pred eeEeeechHH---------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc------
Confidence 9988765543 233444555444333 68999999999999998888764 22211
Q ss_pred CCceeeeccccCCc-cceEEEEEeCC-----------eEEEEe-CCCeEEEeeCCC
Q 041325 346 SGHMVLKGALRGHT-KAILCLAVVSN-----------LLFSGS-SDNTIRIWRRSS 388 (450)
Q Consensus 346 ~~~~~~~~~~~~~~-~~v~~~~~~~~-----------~l~s~~-~dg~v~iwd~~~ 388 (450)
..+....+.|. .+-.|..++.+ ++++++ .+..+++|.-..
T Consensus 272 ---~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 272 ---HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred ---HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 11223444454 33333333311 455554 456699998553
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.41 Score=40.28 Aligned_cols=199 Identities=14% Similarity=0.158 Sum_probs=108.9
Q ss_pred ceeeeEEeecCCCc--ceEEEEE-e-CCEEEEeeCCC--cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe
Q 041325 63 HQCSATLKVKGNSS--YIPSLAI-A-GKLLYGGSSNG--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL 136 (450)
Q Consensus 63 ~~~~~~l~~~~h~~--~v~~~~~-d-~~~l~tgs~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 136 (450)
.+.++++. |.. -...+.| + |.++-+.+.-| .|+.+|+.+++......... .----.++..
T Consensus 33 ~~vv~~yp---Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------~~FgEGit~~ 98 (264)
T PF05096_consen 33 YEVVETYP---HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------RYFGEGITIL 98 (264)
T ss_dssp EEEEEEEE-----TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------T--EEEEEEE
T ss_pred eEEEEECC---CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------cccceeEEEE
Confidence 45566654 443 4557777 4 56666666656 79999999998765533221 1122344445
Q ss_pred CCeEE-EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 137 GDKLF-SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 137 ~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
++.|+ -.-.++...+||.++. +.+..++ ..+.=..
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl----------------~~~~~~~----------------------------y~~EGWG 134 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTL----------------KKIGTFP----------------------------YPGEGWG 134 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTT----------------EEEEEEE-----------------------------SSS--E
T ss_pred CCEEEEEEecCCeEEEEccccc----------------eEEEEEe----------------------------cCCcceE
Confidence 56633 3334788999999877 3333332 1123345
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc----cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA----HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
++ .+++.|+.......|.++|..+.+....+.-. .-..++.+.+. ++.+.+-.-....|...|..+++....
T Consensus 135 Lt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 135 LT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred EE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 55 45667777777889999999988777766521 12346667776 454555556666777777777663322
Q ss_pred ccchhhhh-Hh------hcccceEEEEEcCCCCEEEEee
Q 041325 292 KKHSLVQT-LE------KHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 292 ~~~~~~~~-~~------~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.....+.. .. ....-.+.||+.|..+.|+..+
T Consensus 211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 21111211 11 1135688999998666554443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.64 Score=44.87 Aligned_cols=147 Identities=10% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------CcEEEEeCcchhhh
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKKLRAALQ 289 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~ 289 (450)
++.+++.||.+ ..+..||..+.+-...-.......-.+++.. ++.+.+.|+.+ ..+..||..+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56677777754 3467788776542211110111111222333 45566666632 45788898765532
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC--------cEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR--------SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
....+.........+. .++.+.+.|+.++ .+.+||..+++.... ..+......
T Consensus 420 ------~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-----------~~~~~~r~~ 480 (534)
T PHA03098 420 ------KGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-----------SSLNFPRIN 480 (534)
T ss_pred ------ecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-----------CCCCccccc
Confidence 1211111111112222 2566667776432 388888887654311 111111111
Q ss_pred eEEEEEeCCeEEEEeCC-----CeEEEeeCCC
Q 041325 362 ILCLAVVSNLLFSGSSD-----NTIRIWRRSS 388 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~d-----g~v~iwd~~~ 388 (450)
...+...+..++.|+.+ +.|.+||..+
T Consensus 481 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 481 ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 12333455566666654 4678888775
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.46 Score=45.84 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=83.0
Q ss_pred CceEEEEEccCCCEEEEEe------CCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc---------
Q 041325 211 DTVSALALSSDGSLLYSTS------WDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--------- 273 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------- 273 (450)
..+...+++|+|+.++..- .|. .|.+++.. +.. ..+..+ .....-.|+|+++ .+++..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g--~~~t~PsWspDG~-~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG--HSLTRPSWSLDAD-AVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC--CCCCCceECCCCC-ceEEEecCcceEEEe
Confidence 4678889999999877665 244 45555542 222 333312 2367778888544 333332
Q ss_pred ---CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEE---EEcCCCceeeeCCCCCC
Q 041325 274 ---ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILV---WERDQGNYIVDGDDDSG 347 (450)
Q Consensus 274 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~v---wd~~~~~~~~~~~~~~~ 347 (450)
..+.+.+.+++.++ ... .....|..+.|+|||..++... +|.|++ -....|..-
T Consensus 425 ~~~~~gql~~~~vd~ge--------~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~-------- 484 (591)
T PRK13616 425 RDPATGQLARTPVDASA--------VAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA-------- 484 (591)
T ss_pred ccCCCceEEEEeccCch--------hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee--------
Confidence 22344444443332 111 3356799999999999888766 577776 333333211
Q ss_pred ceeeecccc-CCccceEEEEEeCC-eEEEEeCCCeEEEeeCC
Q 041325 348 HMVLKGALR-GHTKAILCLAVVSN-LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 348 ~~~~~~~~~-~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~ 387 (450)
......+. .-...+..+.|.++ .|+.+..++...+|.+.
T Consensus 485 -l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 485 -LTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred -ecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 00011121 22233577889854 45566665555566554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.82 Score=41.35 Aligned_cols=55 Identities=7% Similarity=0.146 Sum_probs=38.3
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeE
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
.+.+.|+|+++++...... ....+....|+|++ .++--.++.|.+++..++....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-------------~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-------------PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQ 77 (353)
T ss_dssp EEEEEEEETTTTEEEESS--------------EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEE
T ss_pred ceeEEEEecCCCceEECcC-------------CccccccceeecCCCeeEEEecCceEEEECCCCCeEE
Confidence 4678999999977555411 14578889999888 4444557899999988775433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.2 Score=47.73 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=31.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
.+.+..+..||+.++|+-=..+|.|.+-+....+.+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lc 252 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILC 252 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhh
Confidence 4667889999999999999999999999888766553
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.92 Score=41.49 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=80.1
Q ss_pred eEEEEEccCCC-EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--CCCcEEEEeCcchhhh
Q 041325 213 VSALALSSDGS-LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--ADTKIKVWKKLRAALQ 289 (450)
Q Consensus 213 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~ 289 (450)
-..++.++.+. ..+....++.|.+.|..+.+.......+. ....+++.+.+....++-. .++.+.+.|..+.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-- 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-- 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--
Confidence 45677888777 44555556899999988888877776333 6788899986665555555 37888888876655
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCc
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGN 337 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~ 337 (450)
..........+ ..++++|+|+.++... .++.|.+.|.....
T Consensus 152 ------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 152 ------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred ------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 33332222233 8899999999666655 78899999976544
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.62 Score=44.13 Aligned_cols=145 Identities=11% Similarity=0.083 Sum_probs=70.2
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--CcEEEEeCcchhhhcccc
Q 041325 221 DGSLLYSTSWDR-----TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--TKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 221 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~ 293 (450)
++.++++|+.++ .+..||..+.+-...-.......-.+++.. ++.+.+.|+.+ ..+..||..+++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~------ 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAA------ 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCe------
Confidence 455667777543 466788877653322110111111223333 55566777754 357778865543
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+..+..+.........+.+ +|++.+.|+.++ .+..||..+.+... ...+............++.
T Consensus 343 W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~-----------~~~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 343 WVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQF-----------GPSTYYPHYKSCALVFGRR 409 (480)
T ss_pred EEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEe-----------CCCCCCccccceEEEECCE
Confidence 2222223222222222333 677777777654 46678877654331 1111111111223344455
Q ss_pred eEEEEeCCCeEEEeeCCCC
Q 041325 371 LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~ 389 (450)
..+.| |.+.+||..+.
T Consensus 410 IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 410 LFLVG---RNAEFYCESSN 425 (480)
T ss_pred EEEEC---CceEEecCCCC
Confidence 55555 35778888753
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.18 Score=46.42 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=74.5
Q ss_pred CCceEEEEEccCCCEEEEEe---CC-CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE--eC
Q 041325 210 VDTVSALALSSDGSLLYSTS---WD-RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW--KK 283 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw--d~ 283 (450)
...+..-+|+|++..++-.. .. ..+.++|+++++...... ..+.-..-+|+|++..++++...||...+| |+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 33556667888887655442 22 469999999887666654 445556678999888888888888876655 55
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCc--EEEEEcCCC
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRS--ILVWERDQG 336 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~--i~vwd~~~~ 336 (450)
..+. ...+....+.-+.-.|+|||+.|+-.+. .|. |.+++.+.+
T Consensus 270 ~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 270 DGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 4433 1123222333336679999998877654 444 666666544
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.77 Score=40.17 Aligned_cols=203 Identities=13% Similarity=0.149 Sum_probs=109.0
Q ss_pred EEEEEccCCCEEEEEe--CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 214 SALALSSDGSLLYSTS--WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
..++++.++++++... -...|.|.|+..++.+.++.. .+ |....|..+.-+.+-|.||.+.-..+.......
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~- 171 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA- 171 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEe-
Confidence 3467788888877753 356788999999998888762 22 222234455567888899999998887432111
Q ss_pred ccchhhhhHhhcccce-EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc--CC--ccceEEEE
Q 041325 292 KKHSLVQTLEKHKSAV-TALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR--GH--TKAILCLA 366 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i-~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~v~~~~ 366 (450)
.. ....+.....++ ..-++...+..++--+.+|.|+--|+......... .+.+..... .. .+.-.-++
T Consensus 172 ~~--~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-----~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 172 QK--STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-----PWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp EE--EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-----EEESS-HHHHHTTEEE-SSS-EE
T ss_pred Ee--eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-----cccccCccccccCcCCcceeeee
Confidence 11 111222222222 23345555555666788999999888765432100 000000000 00 01112234
Q ss_pred Ee--CCeEEEEe--------CCC--eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 367 VV--SNLLFSGS--------SDN--TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 367 ~~--~~~l~s~~--------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
++ .+.|..-- .|+ .|-++|+.+. +.+..+.. ..++.+|+.+.+.+- +
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~--------krv~Ri~l-~~~~~Si~Vsqd~~P------------~ 303 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH--------KRVARIPL-EHPIDSIAVSQDDKP------------L 303 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--------EEEEEEEE-EEEESEEEEESSSS-------------E
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCC--------eEEEEEeC-CCccceEEEccCCCc------------E
Confidence 44 22222221 122 3555566653 66666653 346889999887762 5
Q ss_pred EEEc-ccCCcEEEEEeC
Q 041325 435 VYSG-SLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~-~~Dg~i~iw~l~ 450 (450)
|++. ..++.|.+||.+
T Consensus 304 L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEeCc
Confidence 6544 568999999863
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.19 Score=50.29 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=87.4
Q ss_pred ceEEEEEccCCCEEEEEe--CCCcEEEEecCCCeEEE-----Eee-----cccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 212 TVSALALSSDGSLLYSTS--WDRTFKIWRTSDFRCLE-----SVK-----NAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
++..+...+|+...++.. .+-.|..||+++...-. .+. ........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 556666677766544443 34478899987643211 010 012334567788886666688888999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+..+.... .....+ ......++++|+|.|+.+++|...|++.-|...-. .... +...-....
T Consensus 182 V~~~~~~~-------~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~---------ip~Pp~~e~ 243 (1405)
T KOG3630|consen 182 VKSTKQLA-------QNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSE---------IPEPPVEEN 243 (1405)
T ss_pred hhhhhhhh-------hhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeec---------ccCCCcCCC
Confidence 98764322 112222 23456799999999999999999999998876522 1100 001111115
Q ss_pred cceEEEEEeCC
Q 041325 360 KAILCLAVVSN 370 (450)
Q Consensus 360 ~~v~~~~~~~~ 370 (450)
..|.++.|-+.
T Consensus 244 yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 244 YRVLSVTWLST 254 (1405)
T ss_pred cceeEEEEecc
Confidence 78999999865
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.91 E-value=2.1 Score=42.75 Aligned_cols=73 Identities=10% Similarity=0.138 Sum_probs=46.9
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE------------------eCCeEEEEeC
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV------------------LGDKLFSAHQ 145 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------------------~~~~l~s~~~ 145 (450)
.+..|+.++.++.|.-.|..+++.+............. .| .....+.+ ..+.++.++.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~---~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR---QH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc---cc-ccccceEEecCCcccccccccccccccCCEEEEecC
Confidence 46677778888999999999999877654433211100 01 01122222 2345888999
Q ss_pred CCeEEEEEcCCCcee
Q 041325 146 DHKIRVWKIDNNTSA 160 (450)
Q Consensus 146 dg~i~iw~~~~~~~~ 160 (450)
|+.+.-.|.++++..
T Consensus 269 Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 269 DARLIALDADTGKLC 283 (764)
T ss_pred CCeEEEEECCCCCEE
Confidence 999999999988543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.8 Score=39.21 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=93.5
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc----------------ccceEEEEEeecCCcEEEEEcC
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH----------------DDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+....|+|+|+.++-.. ++.|.+++..+++..+.-..+. -+.-..+-|+|++..+++.-..
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3678889999999988876 6889999988775443322110 1233567788876654444444
Q ss_pred CCcEEEE-----------------------------------eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEE
Q 041325 275 DTKIKVW-----------------------------------KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 275 dg~i~vw-----------------------------------d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
+..|+.+ |+.+++. ...............+..+.|.++++.|
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~---~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT---TELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC---CEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE---EEeeeccccCCCccCcccceecCCCcEE
Confidence 4433333 3322220 0111111223345668889999998844
Q ss_pred EEee--CC---CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CC-eEEEEeCCCeEEEeeCCCCc
Q 041325 320 YSGA--CD---RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SN-LLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 320 ~~g~--~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-~l~s~~~dg~v~iwd~~~~~ 390 (450)
+..- .+ ..+.++|..+++.-.. ......+--..-..+.+. ++ ++.....||--.||-+...
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~---------~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~- 268 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVV---------LEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD- 268 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEE---------EEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT-
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEE---------EEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc-
Confidence 4332 22 2366677766543211 111111111111223332 22 6666667776555544421
Q ss_pred cccCCCceeEEEecCCCcceEE-EEEEecCC
Q 041325 391 TDHQKGYSCLAVLEGHRRPVKC-LTAVVDSD 420 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~ 420 (450)
......+....-.|.. +.+.++++
T Consensus 269 ------~~~~~~lT~G~~~V~~i~~~d~~~~ 293 (353)
T PF00930_consen 269 ------GGKPRQLTSGDWEVTSILGWDEDNN 293 (353)
T ss_dssp ------SSEEEESS-SSS-EEEEEEEECTSS
T ss_pred ------ccceeccccCceeecccceEcCCCC
Confidence 1223455545556655 55666655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.1 Score=41.10 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=84.6
Q ss_pred CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-----CCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-----DGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 265 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
+...+++|+..|.++||+...+.... ...+-+ ...+.+|-.+..-+ +...|++ =.-..+.||.+.....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~---~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g- 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQP---EDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDG- 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCC---ccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCC-
Confidence 34589999999999999985443111 011111 12456777776532 2234444 4567788888732110
Q ss_pred eeCCCCCCceeeeccccCCccceEEEE-----Ee----CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcce
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLA-----VV----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 410 (450)
..+.+..........|.-.-++.. |. .++++.=+.||.+.+|+-+.- .....+.+ .--.
T Consensus 110 ---~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--------~f~~~lp~-~llP 177 (418)
T PF14727_consen 110 ---TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--------AFSRFLPD-FLLP 177 (418)
T ss_pred ---CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--------EEEEEcCC-CCCC
Confidence 001111111122223332222222 22 248999999999999997742 22222222 2233
Q ss_pred EEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.-+.+.+..+ .+++++.+..|.-|+
T Consensus 178 gPl~Y~~~tD-------------sfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 178 GPLCYCPRTD-------------SFVTASSSWTLECYK 202 (418)
T ss_pred cCeEEeecCC-------------EEEEecCceeEEEec
Confidence 4567777777 788888888777665
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.3 Score=37.33 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=42.5
Q ss_pred cccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeE
Q 041325 303 HKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTI 381 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v 381 (450)
....|-+++.+.+..+++..+- .+...+||..++..+.+ ..+ .....++....-++..+.+|.+
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~-----------a~l----~daaGva~~~~gf~vssg~G~~ 342 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE-----------AAL----PDAAGVAAAKGGFAVSSGQGRI 342 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec-----------ccc----cccccceeccCceEEecCCceE
Confidence 3456778888876666655554 45678999999875521 111 1223444455556666778888
Q ss_pred EEeeC
Q 041325 382 RIWRR 386 (450)
Q Consensus 382 ~iwd~ 386 (450)
.++.-
T Consensus 343 ~~~s~ 347 (366)
T COG3490 343 IFYSR 347 (366)
T ss_pred Eeccc
Confidence 87743
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.4 Score=37.40 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=106.8
Q ss_pred ceeeeecCC-CceEEEEEccCCCEEEEEeCCCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 202 KKCTWVHHV-DTVSALALSSDGSLLYSTSWDRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 202 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
....+.+|- +.|..+....+-.++..|-.--..-+|+... ...+..+. ..+.+..+.++ + .+...+..+.-
T Consensus 33 v~~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~--~~~l~~Dv~vs--e-~yvyvad~ssG 107 (370)
T COG5276 33 VGYAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVIN--ARDLFADVRVS--E-EYVYVADWSSG 107 (370)
T ss_pred cceEEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEe--hhhhhheeEec--c-cEEEEEcCCCc
Confidence 334444554 4455554443333333322112233444431 12222332 45667778886 3 47777777788
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+++.|+.+.. ...++..+. ..+--.++.. .|++..++..|.-+.+.|+.+... ..+......
T Consensus 108 L~IvDIS~P~-----sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpss----------P~lagrya~ 169 (370)
T COG5276 108 LRIVDISTPD-----SPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS----------PQLAGRYAL 169 (370)
T ss_pred eEEEeccCCC-----Ccceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC----------ceeeeeecc
Confidence 9999997765 111222222 2233344444 588998888666677889876431 123334444
Q ss_pred CccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 358 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
....-..++.+|++-..+..|+-+.+-|+.... ....+.... -...+.++..+++..
T Consensus 170 ~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~-----sPvli~~~n-~g~g~~sv~vsdnr~ 226 (370)
T COG5276 170 PGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPH-----SPVLIGSYN-TGPGTYSVSVSDNRA 226 (370)
T ss_pred CCCCceeEEEecCeEEEEEeCCCeEEEEccCCC-----CCeEEEEEe-cCCceEEEEecCCee
Confidence 444456788899999999999999999998742 122332221 222567777776655
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.81 Score=44.44 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCCcEEEEecCC-------C-------------eEEEEeecccccceEEEEEe--ecCCcEEEEEcCCCcE
Q 041325 221 DGSLLYSTSWDRTFKIWRTSD-------F-------------RCLESVKNAHDDAINAIVVS--KSNDGFVYTGSADTKI 278 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i 278 (450)
+...|+.+.+||.|.+|.+++ . ++...+ .....++.++++ . ...++|+++....|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~-~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYK-KSRLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecC-cceEEEEecCCceE
Confidence 445677777777777775421 0 111122 245688999987 4 44578888888999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC---C---EEEEeeCCCcEEEEEc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG---T---VLYSGACDRSILVWER 333 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~---~---~l~~g~~dg~i~vwd~ 333 (450)
.||-...... ...... -..+...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~----r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDE----RFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEecccc----cccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9887654220 100111 11266778899997743 2 7888899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.34 Score=44.61 Aligned_cols=77 Identities=19% Similarity=0.150 Sum_probs=45.6
Q ss_pred cccceEEEEEeecCCcEEEEEcCC---CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCc
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSAD---TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRS 327 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~ 327 (450)
....+..-.|+|+...+....-.. ..+.++|+.+++.. .+..+. +.-..-+|+|||+.|+... .||.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~------~i~~~~---g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP------VILNFN---GNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc------eeeccC---CccCCccCCCCCCEEEEEECCCCC
Confidence 345566667887666543333222 35889998776511 122222 3334568999998776554 4554
Q ss_pred --EEEEEcCCCc
Q 041325 328 --ILVWERDQGN 337 (450)
Q Consensus 328 --i~vwd~~~~~ 337 (450)
|+++|+..+.
T Consensus 262 ~~iy~~dl~~~~ 273 (425)
T COG0823 262 PDIYLMDLDGKN 273 (425)
T ss_pred ccEEEEcCCCCc
Confidence 6677777654
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.1 Score=39.09 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=60.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEE---EecC-----CCeEEEE----eecccccceEEEEEeec----------CCcEEEEE
Q 041325 215 ALALSSDGSLLYSTSWDRTFKI---WRTS-----DFRCLES----VKNAHDDAINAIVVSKS----------NDGFVYTG 272 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~i---wd~~-----~~~~~~~----~~~~~~~~v~~~~~~~~----------~~~~l~~~ 272 (450)
.++.+|++++|+.+..+..+.+ |+.. .+..... +.......|+++.+.|- +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999987776665 6431 1122211 11111257888887764 12369999
Q ss_pred cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
..+|.|++|.- ++ .++....-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G--------~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NG--------VLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cc--------hHHHHHhcCccceEEEEecc
Confidence 99999999984 33 36666667899999888753
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.4 Score=42.36 Aligned_cols=190 Identities=7% Similarity=-0.066 Sum_probs=99.9
Q ss_pred cceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeE
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKL 140 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l 140 (450)
.++++.++. -....+-.+.| +..-|+.-..||+++|+++........ . +........|..+.+..+++
T Consensus 72 sG~lL~~~~--w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-s--------vg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 72 SGQLLGRIL--WKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-S--------VGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred cccchHHHH--hcCCCeeeecccCCceEEEEeccceEEEeecchhhhccc-c--------cccccccCceeEEEEecCce
Confidence 345555555 33448888999 688889999999999999876543321 0 00112234566667766776
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeE--eeecCc----eEEEeecceeeeecCCCceE
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTK--CFLANN----YVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~v~ 214 (450)
+.-..+|.+.+-+-.........+.-........+...+......... ...... .+.........+..-.+.+.
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 666666666554322221111000000000000111111111111100 000000 00000011111222235678
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEe
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 262 (450)
.+..+|+.++|+--...|.|.+-+.+..++...+..........++|.
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 889999999999999999999999887777777764444444567776
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.8 Score=38.04 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=91.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec----ccccceEEEEEeecCCcEEEEEcCC------------
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN----AHDDAINAIVVSKSNDGFVYTGSAD------------ 275 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d------------ 275 (450)
.+.++..-..+..|+++. .-+.+++.+++..+..+.. ......+.+.+.|++ .+..+...
T Consensus 67 ~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 67 GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCc
Confidence 344444444444455443 3456666665554322221 122455677777643 34444333
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-CcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-RSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
|.|+.+|. .+. .......+-..-+.|+||||++.|+.+... +.|+.|++..... ..... .....
T Consensus 143 G~lyr~~p-~g~--------~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g----~~~~~--~~~~~ 207 (307)
T COG3386 143 GSLYRVDP-DGG--------VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATG----PIGGR--RGFVD 207 (307)
T ss_pred ceEEEEcC-CCC--------EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccC----ccCCc--ceEEE
Confidence 22333332 121 223333334556789999999888777654 7888888763100 00000 11111
Q ss_pred ccCCccceEEEEEe--CCeEEEEeCCC-eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 355 LRGHTKAILCLAVV--SNLLFSGSSDN-TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 355 ~~~~~~~v~~~~~~--~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
.....+..-.++.+ +++-+++-.+| .|.+|+.. + +.+..+.-....+++++|--.
T Consensus 208 ~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G--------~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 208 FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G--------KLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred ccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C--------cEEEEEECCCCCCccceEeCC
Confidence 22223333344444 44443444443 89999887 3 566666666677888888653
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.17 Score=50.61 Aligned_cols=156 Identities=10% Similarity=0.005 Sum_probs=90.6
Q ss_pred eeeeEEeecCCCcceEEEEE-eCCEEEEe--eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI-AGKLLYGG--SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~-d~~~l~tg--s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
....+++.++.--.+.-+++ |+...+.. +.+-.|..+|+.+-....... ..................++.|+|.-
T Consensus 90 ~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp 168 (1405)
T KOG3630|consen 90 DENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVP 168 (1405)
T ss_pred ccccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCcc
Confidence 33455554333333444444 65554433 333478899987644222111 11111111122233456677787554
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
.+.+..|+.|++..+..... ....+ .....+++++
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~---------------~v~s~----------------------------p~t~~~Tav~ 205 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQ---------------NVTSF----------------------------PVTNSQTAVL 205 (1405)
T ss_pred chhhhhccccchhhhhhhhhhh---------------hhccc----------------------------CcccceeeEE
Confidence 77888899999887765421 11111 1344689999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEee---cccccceEEEEEeec
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK---NAHDDAINAIVVSKS 264 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~ 264 (450)
|+|.|+.++.|-..|++.-|... ++....+. ......|.+|.|...
T Consensus 206 WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 206 WSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred eccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 99999999999999999988764 33333332 123478999999853
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.0046 Score=55.18 Aligned_cols=145 Identities=16% Similarity=0.166 Sum_probs=100.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
......|-+.+.-++.++.+..+..||-.. +...... ..+....++|....+..++.+...+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey---- 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY---- 108 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh----
Confidence 344556778766688888888999998653 3333332 456667788887666677888889999999987654
Q ss_pred ccchhhhhHh-hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-C
Q 041325 292 KKHSLVQTLE-KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-S 369 (450)
Q Consensus 292 ~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 369 (450)
.+.++ +....-.-+.|++.+..++.|...|.+.|++..+.+.+ .....|...++++++. .
T Consensus 109 -----tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i-------------iv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 109 -----TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI-------------IVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred -----HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhh-------------hhhcccccceeEEEeccc
Confidence 12221 11222222789998889999999999999998876543 2344488889999998 4
Q ss_pred CeEEEEeCCCeE
Q 041325 370 NLLFSGSSDNTI 381 (450)
Q Consensus 370 ~~l~s~~~dg~v 381 (450)
++.+.++.|..+
T Consensus 171 d~vil~dcd~~L 182 (615)
T KOG2247|consen 171 DYVILCDCDNTL 182 (615)
T ss_pred ceeeecCcHHHH
Confidence 577777665443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.7 Score=42.43 Aligned_cols=153 Identities=9% Similarity=0.099 Sum_probs=91.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEE------Eee---------------cccccceEEEEEeec-CCcEEEEEcCCCcEE
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLE------SVK---------------NAHDDAINAIVVSKS-NDGFVYTGSADTKIK 279 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~------~~~---------------~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~ 279 (450)
.++++++. .+.|.||++....... .+. ......|+.|....- +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66677665 7899999986533211 110 012234555544332 233689999999999
Q ss_pred EEeCcchhhhcccc------------chhhhhHhhcccceEEEEEc--CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 280 VWKKLRAALQVNKK------------HSLVQTLEKHKSAVTALALS--TDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 280 vwd~~~~~~~~~~~------------~~~~~~~~~~~~~i~~l~~~--~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
+|.+++-....... ..+...+. -...+++++++ ...++||+++....|.||-+.....-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r------ 200 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER------ 200 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc------
Confidence 99764321000000 00111111 33578999998 78889999998888888876542100
Q ss_pred CCceeeeccccCCccceEEEEEe-----CC---eEEEEeCCCeEEEeeC
Q 041325 346 SGHMVLKGALRGHTKAILCLAVV-----SN---LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~-----~~---~l~s~~~dg~v~iwd~ 386 (450)
. ....-..|...|-+++|. +. .|++++-.|.+.+|++
T Consensus 201 -~---~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 201 -F---YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -c---ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 0 001111256677888885 22 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.86 Score=43.82 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=74.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-EEEEEcCCCcEEEEeCcc-hhhh
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVWKKLR-AALQ 289 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~-~~~~ 289 (450)
...-+.-+.-++..++-+....+.|||.+.+.......-...+.|.++.|...+++ .+++.+..+.|.+|--.. ....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444455555555555556689999999887544433245789999999865554 466666778888885421 1111
Q ss_pred ccccchhhhhH--hhc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 290 VNKKHSLVQTL--EKH-KSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 290 ~~~~~~~~~~~--~~~-~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
....+..+..+ ..+ ..+|.+..|.++|.+++.. ++.+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 11223333322 122 3678899999998765544 4668888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.03 E-value=3.8 Score=40.66 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=52.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCC----------CeE---EEEe-------ecccccceEEEEEeecC--CcEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSD----------FRC---LESV-------KNAHDDAINAIVVSKSN--DGFV 269 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~---~~~~-------~~~~~~~v~~~~~~~~~--~~~l 269 (450)
.|..+.++++|++++..|..|...+ .+.. ++. .+.+ .......|..+.|+|.. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 6889999999999999887665444 3321 111 1111 12345678999999974 4578
Q ss_pred EEEcCCCcEEEEeCcchh
Q 041325 270 YTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 270 ~~~~~dg~i~vwd~~~~~ 287 (450)
++=+.|+.+|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 889999999999996543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.73 Score=44.28 Aligned_cols=105 Identities=10% Similarity=0.164 Sum_probs=64.5
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe----CCeEEEEeCCC
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV----SNLLFSGSSDN 379 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg 379 (450)
...++-+.-+.-++.-++-+....+.|||.+.+..- ....+ .....|..+.|. ++.+++.+..+
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE-----------~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE-----------YEESF-SEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE-----------Eeeee-cCCCceeeceeeecCCCCEEEEEEcCc
Confidence 344455555555555555555567999999976532 22333 456789999996 45778888888
Q ss_pred eEEEeeCC-CCccccCCCceeEEEe--cCCC-cceEEEEEEecCC
Q 041325 380 TIRIWRRS-SSVTDHQKGYSCLAVL--EGHR-RPVKCLTAVVDSD 420 (450)
Q Consensus 380 ~v~iwd~~-~~~~~~~~~~~~~~~~--~~h~-~~v~~l~~~~~~~ 420 (450)
.|.+|--. .........+..+..+ ..|+ .+|.+..|.++|.
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~ 141 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT 141 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe
Confidence 88887431 1111112233333333 3344 6799999999987
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=3.2 Score=40.31 Aligned_cols=149 Identities=9% Similarity=0.083 Sum_probs=77.0
Q ss_pred eEEEEEccCCCEEEEEeCC------------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 213 VSALALSSDGSLLYSTSWD------------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
...-.|+|+|+.+++.... +.+.+.++..++... .....|..+.|+|++..+.+.. +|.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 5566788888877766532 223333333332221 1245799999999777554444 467776
Q ss_pred EeCc---chhhhccccchhhhhH-hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccc
Q 041325 281 WKKL---RAALQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 281 wd~~---~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 355 (450)
=-+. .+. ........+ ......+..+.|..++.++ ++..++.-.+|.+.- |.. .. . ..-
T Consensus 473 a~Vvr~~~G~----~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~--------~~--~-~~~ 536 (591)
T PRK13616 473 AVVEQTEDGQ----YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN--------SD--A-LPS 536 (591)
T ss_pred EEEEeCCCCc----eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc--------cc--c-cCC
Confidence 3222 222 011111112 1223346789999988854 555555555555431 110 00 0 011
Q ss_pred cCCccceEEEEEeCCeEEEEeCCCeEEE
Q 041325 356 RGHTKAILCLAVVSNLLFSGSSDNTIRI 383 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~~l~s~~~dg~v~i 383 (450)
.....++.+++-.+..++....+|.+.+
T Consensus 537 ~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 537 RNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred CCccCceEEEecCCceEEEEcCCceEEe
Confidence 1124566777776666666666774443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=3.7 Score=38.95 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=70.9
Q ss_pred CCCEEEEEeCC--CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC---cEEEEeCcchhhhccccch
Q 041325 221 DGSLLYSTSWD--RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT---KIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 221 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~ 295 (450)
++.+.+.|+.+ ..+..||..+.+-...-.......-.+++.. ++.+.+.|+.++ .+..||.+++...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~------ 389 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQ------ 389 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEE------
Confidence 56677777753 3577788765432211110111111223333 555677777553 4667887765532
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSG 375 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 375 (450)
....+.........+.+ ++++.+.| |.+.+||..+.+.. ....+.............+...+.|
T Consensus 390 ~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~-----------~~~~m~~~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 390 FGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSNTWT-----------LIDDPIYPRDNPELIIVDNKLLLIG 453 (480)
T ss_pred eCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCCcEe-----------EcCCCCCCccccEEEEECCEEEEEC
Confidence 22222111111222222 56666666 35778888765533 1122222222233444556677777
Q ss_pred eCC-----CeEEEeeCCC
Q 041325 376 SSD-----NTIRIWRRSS 388 (450)
Q Consensus 376 ~~d-----g~v~iwd~~~ 388 (450)
+.+ ..+..||..+
T Consensus 454 G~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CcCCCcccceEEEEECCC
Confidence 754 3466777764
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.18 Score=28.74 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=25.9
Q ss_pred cceEEEEEcCCC---CEEEEeeCCCcEEEEEcCC
Q 041325 305 SAVTALALSTDG---TVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 305 ~~i~~l~~~~~~---~~l~~g~~dg~i~vwd~~~ 335 (450)
+.+.++.|+|+. ++|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999843 5888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.23 Score=28.32 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=26.3
Q ss_pred CceEEEEEccC-C--CEEEEEeCCCcEEEEecCC
Q 041325 211 DTVSALALSSD-G--SLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 211 ~~v~~~~~~~~-~--~~l~~~~~dg~i~iwd~~~ 241 (450)
+.|.++.|+|+ + ++|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36899999984 4 6888888899999999985
|
It contains a characteristic DLL sequence motif. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.45 E-value=3.9 Score=37.45 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=84.8
Q ss_pred ceEEEEEccCCCEEEEEeC---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 212 TVSALALSSDGSLLYSTSW---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
....++++++++.+..+.. ++++.+.|..+++.+.... ....+ ..+++.|.+...+++-..++.|.+.|......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence 4567899999987777655 6899999999999888855 22234 88999997765666667899999999765441
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---CcEEEEEcCCCcee
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD---RSILVWERDQGNYI 339 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~ 339 (450)
.. ....... .-......+.++|+|+++.+.... +.+...|..++...
T Consensus 195 ~~---~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 195 VR---GSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred ec---ccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 10 0000011 223345778999999977665544 58999998887644
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.89 Score=42.48 Aligned_cols=119 Identities=11% Similarity=0.161 Sum_probs=69.4
Q ss_pred CCCceEEEEEccC----CCEEEEEeCCCcEEEEecCC-----CeEEE----EeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 209 HVDTVSALALSSD----GSLLYSTSWDRTFKIWRTSD-----FRCLE----SVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 209 ~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
.-..|..+.|.|- ...+++......|.+|.+.- .+.+. .+.....---..+.|+|... .|++-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecC
Confidence 3346889999883 33566667788999998752 22222 22212222345678998444 55444443
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCC
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQ 335 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~ 335 (450)
..=.+++++.... .....+ ...+-|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 134 dvSV~~sV~~d~s------rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSS------RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCc------eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3334555543321 112222 35678999999999998876543 33567887543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.3 Score=34.53 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=84.9
Q ss_pred eEEEEEeC-CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 130 VKSLVVLG-DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 130 v~~l~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
...++-.+ |.|+.+...+.|.+|++..... ..+..++
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~--------------~~~~~F~---------------------------- 57 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEEC--------------PLLCTFS---------------------------- 57 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCC--------------ceeEEEc----------------------------
Confidence 34444445 6666667778899999984422 2223332
Q ss_pred CCCceEEEEEccCCCEEEEEeCC---C---cEEEE---ecC----C-------------------CeEEEEeecccccce
Q 041325 209 HVDTVSALALSSDGSLLYSTSWD---R---TFKIW---RTS----D-------------------FRCLESVKNAHDDAI 256 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw---d~~----~-------------------~~~~~~~~~~~~~~v 256 (450)
--+.|..+.++..|+++++--.+ . .+|+| +.. . +..+..+..+...++
T Consensus 58 Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p 137 (215)
T PF14761_consen 58 TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPP 137 (215)
T ss_pred chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCC
Confidence 22478888888888888886432 2 45664 211 0 111222222345678
Q ss_pred EEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc---hhhhhHhhc--ccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 257 NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH---SLVQTLEKH--KSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~--~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
.+++..|..+ -|+.|+. +.+.+|.+....... ... .....+..| +-.+..+++. +.++|..+ +-.++++
T Consensus 138 ~ciaCC~~tG-~LlVg~~-~~l~lf~l~~~~~~~-~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vl 211 (215)
T PF14761_consen 138 LCIACCPVTG-NLLVGCG-NKLVLFTLKYQTIQS-EKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVL 211 (215)
T ss_pred CEEEecCCCC-CEEEEcC-CEEEEEEEEEEEEec-ccccEEechhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEE
Confidence 8889888555 4555554 578899876544210 000 000111111 1224556664 56777765 5567666
Q ss_pred Ec
Q 041325 332 ER 333 (450)
Q Consensus 332 d~ 333 (450)
.+
T Consensus 212 kl 213 (215)
T PF14761_consen 212 KL 213 (215)
T ss_pred EE
Confidence 54
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.9 Score=35.40 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=35.5
Q ss_pred EEccCCCEEEEEeC-----CCcEEEEecCCC-eEEEEeecccccceEEEEEeecCC
Q 041325 217 ALSSDGSLLYSTSW-----DRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSND 266 (450)
Q Consensus 217 ~~~~~~~~l~~~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 266 (450)
.|++||.+|+..-. .|.|-|||.+.+ +.+.++. .|.-....+.+.+++.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGr 174 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGR 174 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc-cCCcCcceeEEecCCc
Confidence 49999999988654 378999999753 3445555 5666677888887555
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.5 Score=33.99 Aligned_cols=178 Identities=15% Similarity=0.153 Sum_probs=88.3
Q ss_pred eeeeEEeecCCCcc--eEEEEE-eCCEEEEeeCC--CcEEEecCCCCCceeeeecCCCCcceeE---EecCCCceEEEEE
Q 041325 64 QCSATLKVKGNSSY--IPSLAI-AGKLLYGGSSN--GEIRAWNRDPNNYVNITSTDVGDHANVV---ATGNGDAVKSLVV 135 (450)
Q Consensus 64 ~~~~~l~~~~h~~~--v~~~~~-d~~~l~tgs~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~ 135 (450)
+.+++. .|... -..+.+ +|.++.+.+.- ..|++||+.+++......... ..+. ...-.+.++.+.|
T Consensus 35 evi~~y---phDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~~gd~~y~LTw 108 (262)
T COG3823 35 EVIRTY---PHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITKLGDYFYQLTW 108 (262)
T ss_pred EEEEec---cCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC---ccccccceeeccceEEEEEe
Confidence 344444 35443 334555 67777776654 469999999988765533221 0000 0111223333333
Q ss_pred eCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee---------
Q 041325 136 LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW--------- 206 (450)
Q Consensus 136 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 206 (450)
.+|.-..+|.++- +++..++...+.+..+....+.+-........+
T Consensus 109 ---------~egvaf~~d~~t~----------------~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 109 ---------KEGVAFKYDADTL----------------EELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred ---------ccceeEEEChHHh----------------hhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhc
Confidence 3677777777766 455555555555554444333211111100000
Q ss_pred -----ecCC---CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-----------cccccceEEEEEeecCCc
Q 041325 207 -----VHHV---DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-----------NAHDDAINAIVVSKSNDG 267 (450)
Q Consensus 207 -----~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~ 267 (450)
.... ..++.+.|- +|...+-.=.+..|...|.++|+.+..+. ..+..-.+.|++.|..+.
T Consensus 164 ~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 164 DTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred ceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence 0011 112223332 34444444444555556666676665543 234456788899887776
Q ss_pred EEEEEc
Q 041325 268 FVYTGS 273 (450)
Q Consensus 268 ~l~~~~ 273 (450)
++++|-
T Consensus 243 ~~iTGK 248 (262)
T COG3823 243 FLITGK 248 (262)
T ss_pred EEEecC
Confidence 777763
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.9 Score=36.06 Aligned_cols=139 Identities=14% Similarity=0.229 Sum_probs=78.0
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee------CCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA------CDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
-..|++||....+.. .. -.+-.+.|+.|.|..+.++++.|. ....+..||+.+.....
T Consensus 15 C~~lC~yd~~~~qW~------~~--g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-------- 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWS------SP--GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-------- 78 (281)
T ss_pred CCEEEEEECCCCEee------cC--CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee--------
Confidence 456899998765521 11 122567899999986767777764 35578889988765320
Q ss_pred eeeeccc-cCCccceEEEEEe---CC-eEEEEe-CCCe--EEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEec-
Q 041325 349 MVLKGAL-RGHTKAILCLAVV---SN-LLFSGS-SDNT--IRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVD- 418 (450)
Q Consensus 349 ~~~~~~~-~~~~~~v~~~~~~---~~-~l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~- 418 (450)
..... ..-.++|..+.+. .. +.++|. .+|. |..||=. .+..+.. .......|..+.+.+-
T Consensus 79 --~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs--------~W~~i~~~~~~~~t~I~~l~~~~l~ 148 (281)
T PF12768_consen 79 --LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS--------SWSSIGSDILGSGTTIRGLQVLPLN 148 (281)
T ss_pred --cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC--------ceEeccccccCCCCEEEEEEEEecc
Confidence 00001 1224677777774 33 444443 3444 5556533 2444443 2333567788877776
Q ss_pred CCCCCCCCCCCCceEEEEEcc
Q 041325 419 SDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~s~~ 439 (450)
.........++.+..+|++|.
T Consensus 149 ~~~~~~~~~~~~~~~Llv~G~ 169 (281)
T PF12768_consen 149 SSSHDNSSLFDSDQVLLVTGS 169 (281)
T ss_pred ccccccccccCCCcEEEEEee
Confidence 322233334455556777766
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.05 E-value=3.4 Score=35.25 Aligned_cols=145 Identities=12% Similarity=0.013 Sum_probs=78.8
Q ss_pred ceEEEEEeecCCcEEEEEc--CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 041325 255 AINAIVVSKSNDGFVYTGS--ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332 (450)
Q Consensus 255 ~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd 332 (450)
.+.+.++++++..+.++.. ....++++...... .... ....+..-.|++++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~----------~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV----------RPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc----------eeec-cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence 6888899987665545442 33445555432211 1111 233678889999988777777677777764
Q ss_pred -cCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE---EEEeCCCeEEEeeCCCCccc-cCCCceeEEEecC
Q 041325 333 -RDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL---FSGSSDNTIRIWRRSSSVTD-HQKGYSCLAVLEG 405 (450)
Q Consensus 333 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l---~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~ 405 (450)
..+++.. . ..-....-...|..+.++++ .+ +....++.|.+--+...... ...-.........
T Consensus 94 ~~~~g~~~---------~-~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~ 163 (253)
T PF10647_consen 94 DSASGTGE---------P-VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP 163 (253)
T ss_pred ecCCCcce---------e-EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence 2332211 0 00111111128899999865 33 33345677877765532111 0111122223333
Q ss_pred CCcceEEEEEEecCC
Q 041325 406 HRRPVKCLTAVVDSD 420 (450)
Q Consensus 406 h~~~v~~l~~~~~~~ 420 (450)
....++.+.|.++..
T Consensus 164 ~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 164 LLSDVTDVAWSDDST 178 (253)
T ss_pred ccCcceeeeecCCCE
Confidence 456899999999988
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.88 E-value=7.9 Score=38.90 Aligned_cols=123 Identities=10% Similarity=0.049 Sum_probs=69.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeeccccc-------ceEEEEEeec---------------CCcEEEEEcCCCcEE
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDD-------AINAIVVSKS---------------NDGFVYTGSADTKIK 279 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~~---------------~~~~l~~~~~dg~i~ 279 (450)
+..++.++.++.|.-.|..+|+.+-++...... ....+.+... ..+.++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777788889999999999988877622111 0122333211 233788888999999
Q ss_pred EEeCcchhhhcccc--ch--hhhhHhhcccceEEEEEcC--CCCEEEEeeC----------CCcEEEEEcCCCceeeeCC
Q 041325 280 VWKKLRAALQVNKK--HS--LVQTLEKHKSAVTALALST--DGTVLYSGAC----------DRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 280 vwd~~~~~~~~~~~--~~--~~~~~~~~~~~i~~l~~~~--~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~ 343 (450)
-.|.++++...... .. ....+......-..+.-.| .+..+++|+. +|.|+-+|.++|+.+....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99998887211000 00 0000000000001111112 2345666643 6889999999999887655
Q ss_pred C
Q 041325 344 D 344 (450)
Q Consensus 344 ~ 344 (450)
.
T Consensus 354 ~ 354 (764)
T TIGR03074 354 P 354 (764)
T ss_pred c
Confidence 3
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.73 E-value=3.9 Score=34.85 Aligned_cols=281 Identities=11% Similarity=0.137 Sum_probs=150.9
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
.+-+..+.+.+++...+..+.-++|.|+.+......... ..-.+--.++..+++....+..|.-+.+.|+
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~----------lnt~gyaygv~vsGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGF----------LNTDGYAYGVYVSGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecc----------ccCCceEEEEEecCCEEEEeeccCcEEEEEC
Confidence 455666777889999998888999999987553222111 1112455777788888777776667888898
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
.+.+...... ++.........++.+ |++-..+..|+-+
T Consensus 156 sdpssP~lag----------------------------------------rya~~~~d~~~v~IS--Gn~AYvA~~d~GL 193 (370)
T COG5276 156 SDPSSPQLAG----------------------------------------RYALPGGDTHDVAIS--GNYAYVAWRDGGL 193 (370)
T ss_pred CCCCCceeee----------------------------------------eeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence 8764211100 011112222445555 7777788889999
Q ss_pred EEEecCCCeEEEEeecc-cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEE
Q 041325 235 KIWRTSDFRCLESVKNA-HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALAL 312 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~ 312 (450)
.+-|+.....-..+..- ....+.++..++ +...++-...| +.+-|...... .......+. ....++.+..
T Consensus 194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vvy~eg-vlivd~s~~ss-----p~~~gsyet~~p~~~s~v~V 265 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVVYDEG-VLIVDVSGPSS-----PTVFGSYETSNPVSISTVPV 265 (370)
T ss_pred EEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEEcccc-eEEEecCCCCC-----ceEeeccccCCcccccceec
Confidence 99999765432222211 223677777763 33333333333 56666544330 011111110 1112222233
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccc
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTD 392 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 392 (450)
.+++......+.-+.+-|..+..- ..+...+......-..+...++++..+..+ ...+-+....
T Consensus 266 --s~~~~Yvadga~gl~~idisnp~s----------pfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~--- 329 (370)
T COG5276 266 --SGEYAYVADGAKGLPIIDISNPPS----------PFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPP--- 329 (370)
T ss_pred --ccceeeeeccccCceeEeccCCCC----------CchhccccCCCccccceEEecCeeEeccCC-ceEEEeCCCh---
Confidence 466777776677777777764321 111122222222334555666666666555 3344444432
Q ss_pred cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 393 HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+......+....+.+.+.+-+.+ .+.+...++-+.||+.
T Consensus 330 -----s~m~~~~g~~ti~~s~~v~~~~q-------------~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 330 -----SMMDKRPGRPTIGQSCDVSVDTQ-------------IIYSTDYNGGLSIIEY 368 (370)
T ss_pred -----hhcccccCcceEeeecceEEEee-------------EEEEeecCCCEEEEEe
Confidence 11111222223334444444555 7888888999999985
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.41 Score=39.66 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcce--eEEecCCCceEEEEEeCCe--EEEEeCCCeEEE
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHAN--VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 151 (450)
.++..+..++++|++-+.+|.+++||+.+++.........+.... ..-......|..+....++ +++ -.+|....
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEE
Confidence 356667778999999999999999999998754432110000000 0000455688888888766 444 44688899
Q ss_pred EEcCCC
Q 041325 152 WKIDNN 157 (450)
Q Consensus 152 w~~~~~ 157 (450)
|+.+-+
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 988765
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.24 E-value=4 Score=33.51 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=41.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEe
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 262 (450)
.+++..+|++.++.-..++|...|..+|+.+.++. -....|++++|-
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lPt~qitsccFg 262 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LPTPQITSCCFG 262 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cCCCceEEEEec
Confidence 45567789999999999999999999999999998 457889999997
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=6.3 Score=35.29 Aligned_cols=158 Identities=10% Similarity=-0.000 Sum_probs=80.4
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
....+..+.+.++ +.++..+..|.+..- .+.+. ..+..+. ......++.+.+.++++.+++| ..|.+++=
T Consensus 171 ~~g~~~~i~~~~~--g~~v~~g~~G~i~~s-~~~gg----~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~ 240 (334)
T PRK13684 171 AAGVVRNLRRSPD--GKYVAVSSRGNFYST-WEPGQ----TAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFN 240 (334)
T ss_pred CcceEEEEEECCC--CeEEEEeCCceEEEE-cCCCC----CeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEc
Confidence 3557888888863 344455555655432 11111 1122221 1244678999999999877765 45765432
Q ss_pred EcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcce
Q 041325 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410 (450)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 410 (450)
....+..-. ............+.++.+.++ .++.++.+|.+.. ....+ +.++.+.....-....
T Consensus 241 s~d~G~sW~---------~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G-----~tW~~~~~~~~~~~~~ 305 (334)
T PRK13684 241 DPDDLESWS---------KPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGG-----KTWEKDPVGEEVPSNF 305 (334)
T ss_pred cCCCCCccc---------cccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCC-----CCCeECCcCCCCCcce
Confidence 233332110 000000111234677777643 5666777786653 33332 2233322212223457
Q ss_pred EEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+.+.|..++. . +..+..|.|.-|+
T Consensus 306 ~~~~~~~~~~-------------~-~~~G~~G~il~~~ 329 (334)
T PRK13684 306 YKIVFLDPEK-------------G-FVLGQRGVLLRYV 329 (334)
T ss_pred EEEEEeCCCc-------------e-EEECCCceEEEec
Confidence 7888877766 4 4456778776654
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.60 E-value=3.1 Score=38.42 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=52.6
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEe---------cCCCeEEEEe----------ecccccceEEEEEeecC--CcEEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWR---------TSDFRCLESV----------KNAHDDAINAIVVSKSN--DGFVY 270 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd---------~~~~~~~~~~----------~~~~~~~v~~~~~~~~~--~~~l~ 270 (450)
.|..+..++.|..++..+.+|.+.++= +++++..... .....-.+..++|+|+. +..++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 577888899999999988888776653 2234322111 11122346678899977 67888
Q ss_pred EEcCCCcEEEEeCcchh
Q 041325 271 TGSADTKIKVWKKLRAA 287 (450)
Q Consensus 271 ~~~~dg~i~vwd~~~~~ 287 (450)
.-..|+.||+||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999986543
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.39 E-value=2.2 Score=38.63 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=71.3
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeE
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTI 381 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v 381 (450)
.+++|.++.|++|.+.|++--.|..|.+++....+. ........+..+..|..+.|..+ -+|-....| +
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~---------~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS---------QLEYTQECKTKNANILGFCWTSSTEIAFITDQG-I 134 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCch---------hhHHHHHhccCcceeEEEEEecCeeEEEEecCC-e
Confidence 456999999999999999999999999998843221 11223344455667899999865 455554444 6
Q ss_pred EEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.+|..... ...++..+.|.-.|+...|+++..
T Consensus 135 e~y~v~pe-------krslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 135 EFYQVLPE-------KRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred EEEEEchh-------hhhhhhhhhcccCccEEEEccccc
Confidence 77766542 234555677888899999998877
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.32 E-value=2.4 Score=38.77 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=53.7
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC-----------------cE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND-----------------GF 268 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~ 268 (450)
+.+....+.+++.+|++++.++...=|+|.++|+.++..++.++.-....+.-+....... .+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3445566889999999999998888899999999998877776622222221111111110 13
Q ss_pred EEEEcCCCcEEEEeCcchh
Q 041325 269 VYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 269 l~~~~~dg~i~vwd~~~~~ 287 (450)
++-+-.-|.|.||+++.+.
T Consensus 383 vIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEeccCCeEEEEecCCCC
Confidence 4556677889999986544
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.9 Score=44.44 Aligned_cols=100 Identities=12% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-------EEEEEcCCCcEEEEeCcchhhhccc-cchhhhhHh
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-------FVYTGSADTKIKVWKKLRAALQVNK-KHSLVQTLE 301 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~ 301 (450)
-|+.+.+|+.+++.....+. +....|..|.......+ +++.-+.--.|.++-+...+..... .......+.
T Consensus 97 iDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 47899999999977777776 56667777765533333 2233333345666654332210000 000001112
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.....|.++....+|+.+++|- || .+|.+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl 204 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYEL 204 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEE
Confidence 2345688888888888777664 55 45554
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.12 E-value=9.6 Score=35.09 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=85.2
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe------CCeEEEEeCCCeEEEEEcCCCc
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL------GDKLFSAHQDHKIRVWKIDNNT 158 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~~l~s~~~dg~i~iw~~~~~~ 158 (450)
...|++||.+|.++|++......... ..+.-..-..+|..+..- ++..++.-.-+.+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~--------~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE--------DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD 108 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc--------cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC
Confidence 46899999999999999855432111 111122334577777653 1123344555677777773221
Q ss_pred eeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc----C-CCEEEEEeCCCc
Q 041325 159 SAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS----D-GSLLYSTSWDRT 233 (450)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~ 233 (450)
. ... .+....+...-...+ ......+++-| . ..++.+=+.||.
T Consensus 109 g-------~~~----------------------~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~ 156 (418)
T PF14727_consen 109 G-------TVE----------------------HGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGS 156 (418)
T ss_pred C-------Ccc----------------------cCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCce
Confidence 0 000 000001000000011 11223333333 2 356777899999
Q ss_pred EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 234 FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
+.+++-+.......+. .---...+.+.+..+ .+++++.+..+.-|...
T Consensus 157 L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tD-sfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 157 LSFFEQESFAFSRFLP--DFLLPGPLCYCPRTD-SFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEEeCCcEEEEEEcC--CCCCCcCeEEeecCC-EEEEecCceeEEEecHH
Confidence 9999987655444443 233334567777444 78888888889888753
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.09 E-value=5.6 Score=32.36 Aligned_cols=154 Identities=9% Similarity=0.117 Sum_probs=81.7
Q ss_pred CEEEEEeCCCcEEEEecCC--CeEEEEeecccccceEEEEEeecCCcEEEEEcCCC------cEEEE-eCcchhhhccc-
Q 041325 223 SLLYSTSWDRTFKIWRTSD--FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT------KIKVW-KKLRAALQVNK- 292 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vw-d~~~~~~~~~~- 292 (450)
+.|..+...+.|.+|++.+ .+.+..+. .-+.|..+.++..++ ++++--.+. .+|+| |.+........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 4444445678899999883 34555554 568899999998655 776643322 55665 22222100000
Q ss_pred ---------------cch-hh--hhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 293 ---------------KHS-LV--QTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 293 ---------------~~~-~~--~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
... .+ -++ .....+.+++..| .|+ |+.|+ ++.+.+|.+.....- ...........
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~---~~~~~~lDFe~ 179 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQ---SEKFSFLDFER 179 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEe---cccccEEechh
Confidence 000 00 001 1234677888888 455 44454 577999988754321 00000011111
Q ss_pred cc-cCCcc-ceEEEEEeCCeEEEEeCCCeEEEeeC
Q 041325 354 AL-RGHTK-AILCLAVVSNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 354 ~~-~~~~~-~v~~~~~~~~~l~s~~~dg~v~iwd~ 386 (450)
.+ .-|.+ ....+++.++++|..+.. .+++..+
T Consensus 180 ~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 180 SLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 12 12222 357788889999887754 5666654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.6 Score=36.23 Aligned_cols=80 Identities=13% Similarity=0.281 Sum_probs=54.1
Q ss_pred cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh-------hcccceEEEEEcCCCCEEEEeeCCC
Q 041325 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE-------KHKSAVTALALSTDGTVLYSGACDR 326 (450)
Q Consensus 254 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~g~~dg 326 (450)
.++..+.. .+.++++-+.+|.+++||+.+.+..... ......+. .....|..+.++.+|.-|++-+ +|
T Consensus 13 s~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 13 SPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 34444444 4558999999999999999987754322 11112222 3557789999998888776654 68
Q ss_pred cEEEEEcCCCce
Q 041325 327 SILVWERDQGNY 338 (450)
Q Consensus 327 ~i~vwd~~~~~~ 338 (450)
..+.|+..-+..
T Consensus 88 ~~y~y~~~L~~W 99 (219)
T PF07569_consen 88 DSYSYSPDLGCW 99 (219)
T ss_pred CEEEecccccee
Confidence 899999876543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.88 E-value=11 Score=35.11 Aligned_cols=158 Identities=9% Similarity=0.090 Sum_probs=74.7
Q ss_pred EEEEccCCCEEEEEeCCC-----------cEEEEecCCCeEE--EEeecccccc-eEEEEEeecCCcEEEEEcCC---Cc
Q 041325 215 ALALSSDGSLLYSTSWDR-----------TFKIWRTSDFRCL--ESVKNAHDDA-INAIVVSKSNDGFVYTGSAD---TK 277 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---g~ 277 (450)
.+.|.++++.|+-...+. .|..|++.+...- ..+....... ...+..++++..+++..... ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 389999988776654332 3778887765322 3333222233 56777777555344444333 35
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccce-EEEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAV-TALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
+.+.++.... ........+......+ ..+... ++.+++... .++.|...++...... ....
T Consensus 254 v~~~d~~~~~----~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~----------~~~~ 318 (414)
T PF02897_consen 254 VYLLDLDDGG----SPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA----------EWWT 318 (414)
T ss_dssp EEEEECCCTT----TSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG----------GEEE
T ss_pred EEEEeccccC----CCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc----------ccee
Confidence 7777776531 0000111122222223 223332 333433332 2456766676654310 0111
Q ss_pred cccCCcc--ceEEEEEeCCeEE-EEeCCC--eEEEeeCC
Q 041325 354 ALRGHTK--AILCLAVVSNLLF-SGSSDN--TIRIWRRS 387 (450)
Q Consensus 354 ~~~~~~~--~v~~~~~~~~~l~-s~~~dg--~v~iwd~~ 387 (450)
.+..+.. .+..+...+++|+ ....++ .|+++++.
T Consensus 319 ~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 319 VLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 3333433 5667777777444 444454 47888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.19 E-value=11 Score=34.51 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=70.8
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec---ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
..++|.++.|++|.+.+|.--.+..|.+++....+....... .....|....|.. ..-++.-...| +-+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEch
Confidence 455899999999999999999999999999854333322221 2234578888884 33444444444 67776543
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.+ ..++..+.++..|.--.|.++.+.++-++
T Consensus 142 ek-------rslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 142 EK-------RSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hh-------hhhhhhhhcccCccEEEEccccceEeeec
Confidence 32 24556667888888899999877654443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=91.03 E-value=12 Score=34.19 Aligned_cols=193 Identities=9% Similarity=0.091 Sum_probs=77.3
Q ss_pred CCCEEEEEe-CCCcEEEEecCC----CeEEEEeecc--cc----cceEEEEEeecCCcEEEEEc------CCCcEEEEeC
Q 041325 221 DGSLLYSTS-WDRTFKIWRTSD----FRCLESVKNA--HD----DAINAIVVSKSNDGFVYTGS------ADTKIKVWKK 283 (450)
Q Consensus 221 ~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~--~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~vwd~ 283 (450)
+.++|+..+ ..++|.|.|+.+ .+..+.+... +. .....+...| +..+++++- .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 456677666 788999999873 3444444410 11 2223333344 222555432 2245666665
Q ss_pred cchhhhccccchhhhhHhh---cccceEEEEEcCCCCEEEEee--------------------CCCcEEEEEcCCCceee
Q 041325 284 LRAALQVNKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGA--------------------CDRSILVWERDQGNYIV 340 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~g~--------------------~dg~i~vwd~~~~~~~~ 340 (450)
++.+ ....... ...--..+.|.|..+.+++.. ...++++||+.+.+.+.
T Consensus 165 ~tf~--------v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 165 ETFE--------VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp TT----------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred cccc--------ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 4332 1111111 112235566777767776653 24679999999988663
Q ss_pred eCCCCCCceeeeccccCCccceEEEEEe--CC----eEEEEeCCCeEEEe-eCCCCccccCCCceeEEEecC--------
Q 041325 341 DGDDDSGHMVLKGALRGHTKAILCLAVV--SN----LLFSGSSDNTIRIW-RRSSSVTDHQKGYSCLAVLEG-------- 405 (450)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~----~l~s~~~dg~v~iw-d~~~~~~~~~~~~~~~~~~~~-------- 405 (450)
.++-.. .......+.|. ++ ++-++ -.+.|..| ....+.- ..+.+..+..
T Consensus 237 ~idLg~-----------~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W----~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 237 TIDLGE-----------EGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEW----AAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp EEES-T-----------TEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEE----EEEEEEEE--EE--SS--
T ss_pred EEecCC-----------CCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCe----eeeEEEECCCcccCcccc
Confidence 332221 11223444443 22 22222 23333333 3232210 0111111111
Q ss_pred ---------CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 406 ---------HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 406 ---------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
-..-|+.|..|.|.++ +.+++=.+|.|+.|||.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrf------------LYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRF------------LYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-E------------EEEEETTTTEEEEEE-S
T ss_pred cccccccccCCCceEeEEEccCCCE------------EEEEcccCCcEEEEecC
Confidence 1245789999999983 45556689999999973
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.77 E-value=11 Score=33.08 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
-.+.+..+.-+++|++++++.......-||.-...- ..........|..|.|.|+ +.|......|.|+.=+.....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~--~~lw~~~~Gg~~~~s~~~~~~- 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPD--GNLWMLARGGQIQFSDDPDDG- 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TT--S-EEEEETTTEEEEEE-TTEE-
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCC--CCEEEEeCCcEEEEccCCCCc-
Confidence 346788888899999988887666667787643211 1222235689999999974 344445588888887721111
Q ss_pred hccccch-hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 289 QVNKKHS-LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 289 ~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
..+. .........-.+..++|.+++...++|+ .|.+. .....|+- .........-......+.|
T Consensus 219 ---~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGkt----------W~~~~~~~~~~~n~~~i~f 283 (302)
T PF14870_consen 219 ---ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKT----------WQKDRVGENVPSNLYRIVF 283 (302)
T ss_dssp ---EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-----------EE-GGGTTSSS---EEEE
T ss_pred ---cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCcc----------ceECccccCCCCceEEEEE
Confidence 1111 1112222334588999998877777665 55443 34444431 1112222333456778888
Q ss_pred e-CCeEEEEeCCCeEEEe
Q 041325 368 V-SNLLFSGSSDNTIRIW 384 (450)
Q Consensus 368 ~-~~~l~s~~~dg~v~iw 384 (450)
. ++.-+..+.+|.|.-|
T Consensus 284 ~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 284 VNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EETTEEEEE-STTEEEEE
T ss_pred cCCCceEEECCCcEEEEe
Confidence 6 5677777888887654
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.62 E-value=22 Score=36.35 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=93.5
Q ss_pred EEEEecCCCeEEEEeecccc---cceEEEEEeecCCc-EEEEEc-----------CCCcEEEEeCcchhhhccccchhhh
Q 041325 234 FKIWRTSDFRCLESVKNAHD---DAINAIVVSKSNDG-FVYTGS-----------ADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
|++.|..+++.+..+..... -.+..+.|+..+.. +++++. .+|.++.|++-... .....+.
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g----~~lellh 930 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG----DKLELLH 930 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecC----ceeeeee
Confidence 66666666666555542222 23455556544443 333332 23456666654433 1111222
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCC
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSD 378 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 378 (450)
... -.+.+ .+..|...++++| ....+++||+...+.+ .+...+.-...|+.+.+....++.|..-
T Consensus 931 ~T~-~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lL-----------Rk~e~k~~p~~Is~iqt~~~RI~VgD~q 995 (1205)
T KOG1898|consen 931 KTE-IPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLL-----------RKCELKFIPNRISSIQTYGARIVVGDIQ 995 (1205)
T ss_pred ccC-CCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHH-----------hhhhhccCceEEEEEeecceEEEEeecc
Confidence 211 12333 4566666666665 4678999999876544 2233333467789999999988888876
Q ss_pred CeEEEeeCCCCccccCCCceeEEEec--CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVLE--GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
-.|.++..+.. ...+..+- .-...|+++.+...+. ++.|..=|.+.+
T Consensus 996 eSV~~~~y~~~-------~n~l~~fadD~~pR~Vt~~~~lD~~t--------------vagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 996 ESVHFVRYRRE-------DNQLIVFADDPVPRHVTALELLDYDT--------------VAGADRFGNIAV 1044 (1205)
T ss_pred ceEEEEEEecC-------CCeEEEEeCCCccceeeEEEEecCCc--------------eeeccccCcEEE
Confidence 66766554432 12233332 2234566666655543 666665555544
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.60 E-value=23 Score=37.00 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=24.1
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
++++..++++..||.+..||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 78899999999999999999998865
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.28 E-value=3.3 Score=42.92 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
......++|+|...+++.+...|.|++|-...-+..
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEE
Confidence 345677899999999999999999999977644433
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.16 E-value=4.9 Score=37.11 Aligned_cols=125 Identities=16% Similarity=0.196 Sum_probs=71.9
Q ss_pred EEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC--------CEEEEeeCCCcEEEEEcCC-Ccee
Q 041325 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG--------TVLYSGACDRSILVWERDQ-GNYI 339 (450)
Q Consensus 269 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--------~~l~~g~~dg~i~vwd~~~-~~~~ 339 (450)
+..|+....++--|++.++ .+..+..+..- -+.|.|+. +.|+ |-.+..|.-.|.+- |..+
T Consensus 483 ~~dg~~~~kLykmDIErGk--------vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 483 YLDGGERDKLYKMDIERGK--------VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred EecCCCcccceeeecccce--------eeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCce
Confidence 4556666677777887766 55555555443 46777742 3344 44455565556552 2111
Q ss_pred eeCCCCCCceeeeccccCCccceEEE-EEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCL-AVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
. .......... ....+. .-...+++.++..|-|++||.-. ......+.+-...|..+..+.+
T Consensus 552 ~--------v~esKdY~tK-n~Fss~~tTesGyIa~as~kGDirLyDRig--------~rAKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 552 K--------VVESKDYKTK-NKFSSGMTTESGYIAAASRKGDIRLYDRIG--------KRAKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred e--------eeeehhcccc-ccccccccccCceEEEecCCCceeeehhhc--------chhhhcCcccccceeeeEeecC
Confidence 0 0000111111 111222 22245999999999999999653 2344556677788999999999
Q ss_pred CCC
Q 041325 419 SDY 421 (450)
Q Consensus 419 ~~~ 421 (450)
|++
T Consensus 615 Gk~ 617 (776)
T COG5167 615 GKH 617 (776)
T ss_pred CcE
Confidence 993
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.10 E-value=26 Score=36.44 Aligned_cols=184 Identities=16% Similarity=0.243 Sum_probs=97.6
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEee-----c---CCcEEEEEcC---------CCcEEEEeCcchhhhcc--
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK-----S---NDGFVYTGSA---------DTKIKVWKKLRAALQVN-- 291 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~~~~l~~~~~---------dg~i~vwd~~~~~~~~~-- 291 (450)
...|.+.+..+.+.+..+.-....-+.++.... . ...++++|.. -|.++++|+-.---+.+
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP 1082 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP 1082 (1366)
T ss_pred cceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCC
Confidence 445666666666555444423334444444321 1 1236776643 48899999754110000
Q ss_pred ---ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC-CCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 292 ---KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 292 ---~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
...+.+. .+..++.|..++=. +|. |+++ ...+|.+|++. ....+ .. .+..-.--+.++..
T Consensus 1083 ~t~~KlKel~-~eE~KGtVsavceV-~G~-l~~~-~GqKI~v~~l~r~~~li-----------gV-aFiD~~~yv~s~~~ 1146 (1366)
T KOG1896|consen 1083 FTKNKLKELY-IEEQKGTVSAVCEV-RGH-LLSS-QGQKIIVRKLDRDSELI-----------GV-AFIDLPLYVHSMKV 1146 (1366)
T ss_pred cccceeeeee-hhhcccceEEEEEe-ccE-EEEc-cCcEEEEEEeccCCcce-----------ee-EEeccceeEEehhh
Confidence 0111111 12345677666543 565 4443 35679999994 33222 11 11112222344444
Q ss_pred eCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe--cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 368 VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL--EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 368 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
-.++|+.|.--..|.+.-.+.. + ..+..+ ....-.+.++.|.-++. ...++++..|+.|+
T Consensus 1147 vknlIl~gDV~ksisfl~fqee------p-~rlsL~srd~~~l~v~s~EFLVdg~-----------~L~flvsDa~rNi~ 1208 (1366)
T KOG1896|consen 1147 VKNLILAGDVMKSISFLGFQEE------P-YRLSLLSRDFEPLNVYSTEFLVDGS-----------NLSFLVSDADRNIH 1208 (1366)
T ss_pred hhhheehhhhhhceEEEEEccC------c-eEEEEeecCCchhhceeeeeEEcCC-----------eeEEEEEcCCCcEE
Confidence 4678888877777777766632 1 222222 12234678888888876 33788889999999
Q ss_pred EEE
Q 041325 446 IWQ 448 (450)
Q Consensus 446 iw~ 448 (450)
+|-
T Consensus 1209 vy~ 1211 (1366)
T KOG1896|consen 1209 VYM 1211 (1366)
T ss_pred EEE
Confidence 874
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=89.93 E-value=12 Score=32.49 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=54.5
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeC-----------------
Q 041325 315 DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS----------------- 377 (450)
Q Consensus 315 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~----------------- 377 (450)
+|++.++-+..|.+..+|..+|+.. ....+. +....++|.|+++++|-.
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e-----------~Va~vp---G~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l 277 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQ-----------PVAFLP---GFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERL 277 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEE-----------EEEECC---CCCcccceeCCEEEEEeccccCCCCcCCCchhhhh
Confidence 6778888888888888888776533 222332 344677777876665542
Q ss_pred ---CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 378 ---DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 378 ---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
..-|.+-|++++. ......+.+--..+.+++..|.-.
T Consensus 278 ~~~~CGv~vidl~tG~------vv~~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 278 DALGCGVAVIDLNSGD------VVHWLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred hhhcccEEEEECCCCC------EEEEEEeCCceeEEEEEEEecCCC
Confidence 1236667777651 122334556667788888888755
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=23 Score=35.46 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=65.8
Q ss_pred ceEEEEEccCCCEEEEEeC-----CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEE
Q 041325 212 TVSALALSSDGSLLYSTSW-----DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVW 281 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw 281 (450)
.+..+.++|++++|+.+.. .-.|++.|+.+++.+.... ...-..++|.++++.++++...+ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i---~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL---DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc---cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 4667889999998887643 2358889998876432221 11125689998777666665432 357777
Q ss_pred eCcchhhhccccchhhhhHhhcccceE-EEEEcCCCCEEEEeeC---CCcEEEEEcC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVT-ALALSTDGTVLYSGAC---DRSILVWERD 334 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~g~~---dg~i~vwd~~ 334 (450)
++.++. ....++.. ....... .+..+.++++++..+. ++.+.+++..
T Consensus 205 ~lgt~~----~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPA----SQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCCh----hHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 776653 11112222 2222222 3334447887665543 4578888853
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.59 E-value=12 Score=32.01 Aligned_cols=169 Identities=10% Similarity=0.115 Sum_probs=103.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE-eCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA-HQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~-~~dg~ 148 (450)
|-...|.++.| +.+.|++......-.||=...|+.+..... .+ -...-.|.+.+++ ++.+ -.++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----------~g-~~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------TG-FSDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----------cc-cCChhHeEEecCCEEEEEehhcce
Confidence 55566999999 677888877778888887777777665322 22 2244567777665 3333 34777
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
+.+..++........... . .........+.....++|+|....|..+
T Consensus 152 l~~~~vd~~t~~~~~~~~-----------~----------------------i~L~~~~k~N~GfEGlA~d~~~~~l~~a 198 (316)
T COG3204 152 LYLFTVDADTTVISAKVQ-----------K----------------------IPLGTTNKKNKGFEGLAWDPVDHRLFVA 198 (316)
T ss_pred EEEEEEcCCccEEeccce-----------E----------------------EeccccCCCCcCceeeecCCCCceEEEE
Confidence 888877765321111000 0 0000011125567889999988888888
Q ss_pred eCCCcEEEEecCCCeEEEEe---e------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 229 SWDRTFKIWRTSDFRCLESV---K------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~---~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
-+-.-+.||.+......... . .-.-..+.++.+++..+.+++-+..++.+.-.|...
T Consensus 199 KEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 199 KERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 87788888877643211110 0 011245777888887777788888888887777643
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.58 E-value=14 Score=34.31 Aligned_cols=61 Identities=11% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 265 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
..+++++++..|-|++||.-... ....+.+....|-.+..+.+|+++++.+. ..|.+.|++
T Consensus 572 esGyIa~as~kGDirLyDRig~r--------AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKR--------AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcch--------hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 56799999999999999953322 34445666788999999999999887764 567777765
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=88.96 E-value=13 Score=34.65 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=38.3
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE--EEEee----cccccceEEEEEeecC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC--LESVK----NAHDDAINAIVVSKSN 265 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~----~~~~~~v~~~~~~~~~ 265 (450)
.-...+.|+|.|++++|++--..|.|++++..++.. +..+. .........|+++|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344678999999998777655469999998665432 21111 1135678999999753
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.60 E-value=19 Score=32.84 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=56.5
Q ss_pred ceEEEEEccCCCEEEEEe-----------CCC-cEEEEecCC--Ce--EEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 212 TVSALALSSDGSLLYSTS-----------WDR-TFKIWRTSD--FR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+. ........+++.+ ++ ++++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~--~G-lyV~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAV--GG-VYVATPP 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEec--CC-EEEeCCC
Confidence 567899999999877653 223 677776543 22 223333 2234567888874 44 4445554
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhh----cccceEEEEEcCCCCEEEEee
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEK----HKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~g~ 323 (450)
...++.|..............+..+.. +......++|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 433344543211000011112222222 234577899999998766544
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=88.43 E-value=5 Score=38.92 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=27.8
Q ss_pred cceEEEEEcC----CCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 305 SAVTALALST----DGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 305 ~~i~~l~~~~----~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
.....++++. +..+|++.+.|++||+||+.+++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 3455566665 678999999999999999999998543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=88.43 E-value=22 Score=33.24 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=21.9
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
..|.++..++ +.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488888874 4899999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=88.42 E-value=8.4 Score=34.47 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=34.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce---eeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNY---IVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
..+.|+|.|||+++++ ...|.|++++ ..+.. +.. ..............+++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~---------~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVAD---------LPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE----------TTTBTSTTBSEEEEEE-T
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecc---------cccccccccCCcccceecc
Confidence 4588999999987665 5699999999 43332 110 1112334456778999987
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=88.35 E-value=28 Score=34.85 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=52.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCC--CceeeeCCCCCCceeeec-------cccCCccceEEEEEeC-----C
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQ--GNYIVDGDDDSGHMVLKG-------ALRGHTKAILCLAVVS-----N 370 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~-----~ 370 (450)
-.|..+.++|+|++++..+..| |.|..+.. |+. ..+........+.. ....+...|..+.|+| .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~-~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKN-GEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcc-ccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4689999999999999888766 55555532 110 00111111111111 1123456789999984 3
Q ss_pred eEEEEeCCCeEEEeeCCCC
Q 041325 371 LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~ 389 (450)
.|+.-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888899999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.19 E-value=32 Score=35.87 Aligned_cols=165 Identities=12% Similarity=0.128 Sum_probs=88.0
Q ss_pred CEEEEEeC---------CCcEEEEecCC-----C------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 223 SLLYSTSW---------DRTFKIWRTSD-----F------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 223 ~~l~~~~~---------dg~i~iwd~~~-----~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
.++++|.. .|.+.|+|+-+ + +....+....++.|..++-. .++|+++.. ..|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~G-qKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQG-QKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEccC-cEEEEEE
Confidence 46777642 48899999743 2 22222333567788887765 446666544 5699999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
++.... ++.. .-..-++......-=.++|+.|..-..|.+.-+..... .+.+. ......-.+
T Consensus 1123 l~r~~~-------ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~---------rlsL~-srd~~~l~v 1184 (1366)
T KOG1896|consen 1123 LDRDSE-------LIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPY---------RLSLL-SRDFEPLNV 1184 (1366)
T ss_pred eccCCc-------ceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCce---------EEEEe-ecCCchhhc
Confidence 843220 1100 00111222222222356777776666666655543211 11111 111122345
Q ss_pred EEEEEe--CC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc
Q 041325 363 LCLAVV--SN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP 409 (450)
Q Consensus 363 ~~~~~~--~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 409 (450)
+++.|- |. .++++..|+.|++|-..........+.+.+..-.-|.+.
T Consensus 1185 ~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~ 1235 (1366)
T KOG1896|consen 1185 YSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGA 1235 (1366)
T ss_pred eeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEecc
Confidence 666664 43 888999999999987765443334455666655555443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=88.12 E-value=19 Score=32.25 Aligned_cols=69 Identities=14% Similarity=0.038 Sum_probs=41.1
Q ss_pred cceEEEEEe---------CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCC
Q 041325 360 KAILCLAVV---------SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 360 ~~v~~~~~~---------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
..++.+.|. +.++++.-..+.|...++..+ .........+......+..+++.||+.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~r~~~v~~~pDG~---------- 318 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED----GSVTEEEEFLGGFGGRPRDVAQGPDGA---------- 318 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT----EEEEEEEEECTTSSS-EEEEEEETTSE----------
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC----CCccceEEccccCCCCceEEEEcCCCe----------
Confidence 455666664 225665555677877777643 111122223345555899999999998
Q ss_pred ceEEEEEcccCCcEE
Q 041325 431 TSFLVYSGSLDCEIK 445 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~ 445 (450)
+.++-+.+|.|.
T Consensus 319 ---Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 ---LYVSDDSDGKIY 330 (331)
T ss_dssp ---EEEEE-TTTTEE
T ss_pred ---EEEEECCCCeEe
Confidence 777777888774
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.09 E-value=9.1 Score=28.52 Aligned_cols=109 Identities=10% Similarity=0.123 Sum_probs=67.6
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCe--------EEEEeecccccceEEEEEeecC----CcEEEEEcCCCcEEEEeC
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFR--------CLESVKNAHDDAINAIVVSKSN----DGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~vwd~ 283 (450)
-.|......|++++.-|+|.|++..... .+..+. -...|++++--+-. ...|+.|+. ..+..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3466666678888889999999876432 334443 55678888766532 235666665 56899999
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcC----CCCEEEEeeCCCcEEEEEcCCCc
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALST----DGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~----~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.... .+. ++.-...+.++.+-. +..++++| .+..|.-||..-.+
T Consensus 81 ~~N~--------d~F-yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNS--------DLF-YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred ccCc--------hhh-hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 7655 222 223346677776632 33455554 46677777766443
|
|
| >PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length | Back alignment and domain information |
|---|
Probab=87.68 E-value=2 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.6
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEec
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWN 101 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~ 101 (450)
..|.+++....+++.+...+.+|+|+
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 46889999888999999999999984
|
The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.43 E-value=24 Score=36.97 Aligned_cols=74 Identities=18% Similarity=0.356 Sum_probs=49.5
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecC----CC---e-E----------------EEEeecccccceEEEEEeecC
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTS----DF---R-C----------------LESVKNAHDDAINAIVVSKSN 265 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~---~-~----------------~~~~~~~~~~~v~~~~~~~~~ 265 (450)
.-.|+|+....+|+.+.+|- || .+|.+. ++ + + +..+...+.++|..+.+.. .
T Consensus 178 g~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S 253 (1311)
T ss_pred CceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence 34688999888998877665 55 445432 11 1 1 0011124567899999986 4
Q ss_pred CcEEEEEcCCCcEEEEeCcchh
Q 041325 266 DGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
.+++.+=+..|.|.+||+....
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cceeeeeccCceEEEEEccCCC
Confidence 5588999999999999997643
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.3 Score=47.65 Aligned_cols=193 Identities=10% Similarity=0.096 Sum_probs=98.4
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh-hhhHhhcccceEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL-VQTLEKHKSAVTA 309 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 309 (450)
.+.+++-+......-..+..+..+.+-.+.|...+...+. -.-|.+.+||+.--+-+ ....+ +.........+.-
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~--iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE--IQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccc--cccceEEeecCcCCCCcce
Confidence 4556665554332212233356778888888643333333 34477889987542200 01111 1111122233455
Q ss_pred EEEcC---CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE-------------EEEeCCeEE
Q 041325 310 LALST---DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC-------------LAVVSNLLF 373 (450)
Q Consensus 310 l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~~~~~~l~ 373 (450)
+.|.| +.-++..+-.++.|++........ ..+.+|...++. ++.+|..++
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--------------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a 251 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--------------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFA 251 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH--------------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEE
Confidence 55555 666777788888888877664321 233345554443 444566788
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCC-cceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEE
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR-RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQ 448 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~ 448 (450)
.++.||.+++|.+.-. ......|+...+.|. .+-.|.-|+.+....+ . -+.-.++++++ ....+++|.
T Consensus 252 ~a~~dG~v~f~Qiyi~---g~~~~rclhewkphd~~p~vC~lc~~~~~~~v---~-i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYIT---GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVV---S-IGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred EeecCCccceeeeeee---ccccHhhhhccCCCCCCCceeeeeccccccCC---c-cceeEEEEecccCCcceeEee
Confidence 8888888888865421 022345666677776 3333333433322100 0 11122445554 344578884
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.19 E-value=0.07 Score=48.06 Aligned_cols=135 Identities=13% Similarity=0.183 Sum_probs=88.7
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~ 160 (450)
.+.-++.++.+..|..||-........ ..++....++|.-++ ++.+-..+.+.+||+.+....
T Consensus 45 e~~nlavaca~tiv~~YD~agq~~le~--------------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKAGQVILEL--------------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred CCCceehhhhhhHHHhhhhhcceeccc--------------CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 444577777888899998655443322 233456677776443 666677889999999876321
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
.....+ .|.... +.|++....++.+...|.+.|++..
T Consensus 111 qLE~gg-----------------------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhg 147 (615)
T KOG2247|consen 111 QLESGG-----------------------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHG 147 (615)
T ss_pred HHhccC-----------------------------------------cchHHH--HhhccCCccccccccccceEEEecc
Confidence 100000 122222 6788888888888899999999988
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
+.+.+.... .|...+.++++.+ .++.+.++.|..+
T Consensus 148 tsR~iiv~G-kh~RRgtq~av~l--Ed~vil~dcd~~L 182 (615)
T KOG2247|consen 148 TSRRIIVMG-KHQRRGTQIAVTL--EDYVILCDCDNTL 182 (615)
T ss_pred chhhhhhhc-ccccceeEEEecc--cceeeecCcHHHH
Confidence 776665554 4888999999985 3466666555443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=28 Score=32.05 Aligned_cols=144 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCe-EEEEeCCCeEEE--------EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 127 GDAVKSLVVLGDK-LFSAHQDHKIRV--------WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 127 ~~~v~~l~~~~~~-l~s~~~dg~i~i--------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
.+....+...++. ++..+..|.+.. |.....
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~---------------------------------------- 277 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNR---------------------------------------- 277 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecC----------------------------------------
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-----EEEEeecc-cccceEEEEEeecCCcEEEE
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-----CLESVKNA-HDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~l~~ 271 (450)
.....+..+.+.+++.+++++. +--.++....++ ........ ....+.++.+. +++.++.
T Consensus 278 ----------~~~~~l~~v~~~~dg~l~l~g~--~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~--~d~~~~a 343 (398)
T PLN00033 278 ----------ASARRIQNMGWRADGGLWLLTR--GGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYR--SKKEAWA 343 (398)
T ss_pred ----------CCccceeeeeEcCCCCEEEEeC--CceEEEecCCCCcccccceeecccCCCCcceEEEEEc--CCCcEEE
Q ss_pred EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
++.+|.+....- ....++....-..-...++.+.|.++++.+++|. +|.|.-|
T Consensus 344 ~G~~G~v~~s~D------~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 344 AGGSGILLRSTD------GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred EECCCcEEEeCC------CCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=85.46 E-value=28 Score=31.56 Aligned_cols=118 Identities=24% Similarity=0.316 Sum_probs=66.9
Q ss_pred ceEEEEE--cc-CCC-EEEEEeCCCcEEEEecC---CC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 212 TVSALAL--SS-DGS-LLYSTSWDRTFKIWRTS---DF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 212 ~v~~~~~--~~-~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.+..+|+ ++ +|. +++....+|.+..|.+. .+ +.++.+. -...+..+.... ..+.|+.+-.+.-|.-
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDD-ETGRLYVGEEDVGIWR 233 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEET-TTTEEEEEETTTEEEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEec-ccCCEEEecCccEEEE
Confidence 4566665 33 454 55667788988888764 22 4566665 345778888775 5568999999888877
Q ss_pred EeCcchhhhccccchhhhhHh--hcccceEEEEEc--CCCC-EEE-EeeCCCcEEEEEcCC
Q 041325 281 WKKLRAALQVNKKHSLVQTLE--KHKSAVTALALS--TDGT-VLY-SGACDRSILVWERDQ 335 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~--~~~~-~l~-~g~~dg~i~vwd~~~ 335 (450)
|+.+-... .....+.... .....|-.|++- .+++ ||+ +.-.+++..||+...
T Consensus 234 y~Aep~~~---~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 234 YDAEPEGG---NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EESSCCC----S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecCCCCC---CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 77653221 1111221111 233556677664 3332 444 444577899999875
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.16 E-value=28 Score=31.24 Aligned_cols=113 Identities=10% Similarity=0.090 Sum_probs=62.1
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc---cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA---HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
..++++.+.++++.++.+ ..|.+++=..+.++.-.....+ ....+.++.+.+ ++.++.++.+|.+.. ....++
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~--~~~~~~~G~~G~v~~-S~d~G~ 290 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT--PGEIWAGGGNGTLLV-SKDGGK 290 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC--CCCEEEEcCCCeEEE-eCCCCC
Confidence 468889999998876665 4676654334444332222211 224577888876 334555666776543 333322
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.+........-......+.|..+++.+++ +..|.|..|+-
T Consensus 291 -----tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 291 -----TWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred -----CCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 22222111122245777888766666554 55788877753
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.93 E-value=29 Score=31.23 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=32.3
Q ss_pred CCCEEEEEeCC-------CcEEEEecCCCeEEEEeeccc-cc-c--eEEEEEeecCCcEEEEEcCC-----CcEEEEeCc
Q 041325 221 DGSLLYSTSWD-------RTFKIWRTSDFRCLESVKNAH-DD-A--INAIVVSKSNDGFVYTGSAD-----TKIKVWKKL 284 (450)
Q Consensus 221 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~-~~-~--v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~ 284 (450)
++.+++.|+.+ ..+.+||+.+.+=...-.... .. . -.+++.. ++.+++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34566666642 357788887754222111000 00 0 1122222 45577777653 357788886
Q ss_pred chh
Q 041325 285 RAA 287 (450)
Q Consensus 285 ~~~ 287 (450)
+.+
T Consensus 110 t~~ 112 (341)
T PLN02153 110 KNE 112 (341)
T ss_pred CCE
Confidence 654
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.68 E-value=30 Score=31.16 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEE--Eeec---ccccceEEEEEeecCCcEEEEEcCC-----------CcEE
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLE--SVKN---AHDDAINAIVVSKSNDGFVYTGSAD-----------TKIK 279 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~ 279 (450)
++++++.|+.+ ..+.+||..+.+-.. .+.. .....-.+++.. ++.+++.|+.+ ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEE
Confidence 35556666543 357788887654221 1100 011112223333 45566666653 2467
Q ss_pred EEeCcchh
Q 041325 280 VWKKLRAA 287 (450)
Q Consensus 280 vwd~~~~~ 287 (450)
+||..+.+
T Consensus 163 ~yd~~~~~ 170 (341)
T PLN02153 163 AYNIADGK 170 (341)
T ss_pred EEECCCCe
Confidence 78887654
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=84.33 E-value=60 Score=34.42 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=29.9
Q ss_pred ccceeeeEEeecCCCcceEEEEEeC----C-E----EEEeeCCCcEEEecCC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAIAG----K-L----LYGGSSNGEIRAWNRD 103 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~d~----~-~----l~tgs~dg~v~vw~~~ 103 (450)
..+..+.+....||...|.|...+| . + .++.+-||.+.|=|.+
T Consensus 333 ~~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 333 EEPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred cCCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 3445566666669999999998843 2 2 2345689999997765
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=84.00 E-value=53 Score=33.52 Aligned_cols=240 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred Ccc-cCCcccCCCccC-------CCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCc-
Q 041325 6 PFP-MPCRRNKEPKFQ-------PSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSS- 76 (450)
Q Consensus 6 ~~~-~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~- 76 (450)
+|. .....|+++.|+ +.+.-+.........=+.|..... .......++.-...++..+....-.+
T Consensus 73 ~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~------~~~~~~~~s~i~~~~l~~i~~~~tgg~ 146 (765)
T PF10214_consen 73 AWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRV------ISSIRSRPSRIDPNPLLTISSSDTGGF 146 (765)
T ss_pred eeEcCCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccc------cccccCCccccccceeEEechhhcCCC
Q ss_pred ceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 77 YIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 77 ~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
+...++| +...||.-...|.-.||++........ +..-+.....|.|
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~--------------------------~~~~~~~~~~gsi---- 196 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKS--------------------------SNLRLSRNISGSI---- 196 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCC--------------------------cceeeccCCCccc----
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
+... ...+.-..+.|.++.+.|+.++ ...
T Consensus 197 ~~d~--------------------------------------------------~e~s~w~rI~W~~~~~~lLv~~-r~~ 225 (765)
T PF10214_consen 197 IFDP--------------------------------------------------EELSNWKRILWVSDSNRLLVCN-RSK 225 (765)
T ss_pred cCCC--------------------------------------------------cccCcceeeEecCCCCEEEEEc-CCc
Q ss_pred EEEEecCCCeEEE-EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch--hhhccccchhhhhHhhcccceEEE
Q 041325 234 FKIWRTSDFRCLE-SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA--ALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 234 i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
+.++|+++..... .........|..+.-++.+..+++.-+. ..|...++... .....-.++....-....-.++..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~ 304 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQ 304 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccCCCCCeeeeeecccccCCCCCceEEEEE
Q ss_pred EE-cCCCCEEEEeeCCCcEEEEEc
Q 041325 311 AL-STDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 311 ~~-~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.. ..+--.++..-....|.+|.+
T Consensus 305 ~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 305 KVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred EcCCCEEEEEEEcCCCCcEEEEEE
|
These proteins are found in fungi. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.84 E-value=41 Score=34.31 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=47.7
Q ss_pred EEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCc
Q 041325 80 SLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNT 158 (450)
Q Consensus 80 ~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~ 158 (450)
|++--|+.+..|+.||.+.++.+........... ......+.-.-+..+|..+...+.. ++-.-.|+.|.++++...+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCccc
Confidence 5555799999999999999999876542221111 0000000111225677777666554 5555567778888887665
Q ss_pred e
Q 041325 159 S 159 (450)
Q Consensus 159 ~ 159 (450)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 4
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=83.49 E-value=39 Score=31.68 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=36.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc-cCCccceEEEEEeCCe
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL-RGHTKAILCLAVVSNL 371 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 371 (450)
...+.|+|.|||++|++--..|.|++++..++...... .+.... .........|++++++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~-------~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF-------TLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee-------cCCceeccCCCCceeeEEECCCc
Confidence 45688999999987776654699999986554321000 000011 1125667888888664
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.45 E-value=23 Score=28.83 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=60.4
Q ss_pred CCCEEEEEeC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 221 DGSLLYSTSW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 221 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
+|.++.+.+. ...|+.||+.+++.+...... ...+..=-....++.+....-.+|.-..+|.++-+ .+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~--------~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE--------ELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhh--------hhc
Confidence 4566666653 457999999999887766533 12222111111144455556678888899986655 444
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
.+. .++.=+.++. |++-|+.++....++.-|.++
T Consensus 126 ~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 126 RFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred ccc-cCCcceeeec--CCcceEeeCCceEEEecCHHH
Confidence 443 2344455654 555566666556666666554
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=83.28 E-value=6.1 Score=22.14 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=23.2
Q ss_pred cCCCEEEEEe-CCCcEEEEecCCCeEEEEee
Q 041325 220 SDGSLLYSTS-WDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 220 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 249 (450)
|+++.|+++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 4666666554 58899999999998888776
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=82.88 E-value=29 Score=29.64 Aligned_cols=145 Identities=14% Similarity=0.022 Sum_probs=77.4
Q ss_pred ceEEEEEccCCCEEEEEe---CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe-Ccchh
Q 041325 212 TVSALALSSDGSLLYSTS---WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK-KLRAA 287 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~ 287 (450)
.+.+.+++++++.++... ....+.++.. +....... ....+..-.|.++ ....+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCc
Confidence 688899999998777655 3334555543 33333332 2336777788875 33444444555566663 22222
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.....+.. ......|+.+.++|||..++... .++.|.+--+.....- .+................++.
T Consensus 100 ----~~~~~v~~-~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g----~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 100 ----GEPVEVDW-PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG----VPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred ----ceeEEecc-cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC----CcceeccceEecccccCccee
Confidence 00001111 11112899999999999887765 3577777655421100 000000111222233567899
Q ss_pred EEEeCC
Q 041325 365 LAVVSN 370 (450)
Q Consensus 365 ~~~~~~ 370 (450)
++|.++
T Consensus 171 v~W~~~ 176 (253)
T PF10647_consen 171 VAWSDD 176 (253)
T ss_pred eeecCC
Confidence 999865
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=82.83 E-value=17 Score=27.08 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=45.4
Q ss_pred CCCceEEEEEcc-----CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC--cEEEEEcCCCcEEEE
Q 041325 209 HVDTVSALALSS-----DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND--GFVYTGSADTKIKVW 281 (450)
Q Consensus 209 ~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vw 281 (450)
-...|++++-.+ +.+.|+.|+ ...+..||+.+...+..- .-.+.|+++.+-.... .-++..+.+..|.-|
T Consensus 46 in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gf 122 (136)
T PF14781_consen 46 INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGF 122 (136)
T ss_pred CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhh--hCccceeEEEEEecCCCCCcEEEECceEEEEEe
Confidence 344677776544 356677776 568999999877654433 3457788887743222 234555555677777
Q ss_pred eCcc
Q 041325 282 KKLR 285 (450)
Q Consensus 282 d~~~ 285 (450)
|.+.
T Consensus 123 d~~G 126 (136)
T PF14781_consen 123 DYEG 126 (136)
T ss_pred CCCC
Confidence 7543
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=82.12 E-value=40 Score=30.67 Aligned_cols=202 Identities=15% Similarity=0.150 Sum_probs=105.6
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEee----cCCcE-EEEE-cCC---CcEEEEeCcchhhhc
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK----SNDGF-VYTG-SAD---TKIKVWKKLRAALQV 290 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~-l~~~-~~d---g~i~vwd~~~~~~~~ 290 (450)
|...+++...+++-+.+||+. |+.+..+. .+..+.+.... .+... |+++ ..+ ..|++|.+....
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~--- 138 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT--- 138 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT---
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC---
Confidence 456678888889999999996 66666664 23444444321 12221 3333 332 469999875321
Q ss_pred cccchhhh----hHhhcccceEEEEEc--C-CCC-EEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccc
Q 041325 291 NKKHSLVQ----TLEKHKSAVTALALS--T-DGT-VLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 291 ~~~~~~~~----~~~~~~~~i~~l~~~--~-~~~-~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.....+. .+......+..+|+- + +|. +.+....+|.+..|.+.. ++- .....+.+.+.. ...
T Consensus 139 -g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g-------~v~~~lVR~f~~-~sQ 209 (381)
T PF02333_consen 139 -GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG-------KVSATLVREFKV-GSQ 209 (381)
T ss_dssp -TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-------SEEEEEEEEEE--SS-
T ss_pred -CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-------cEeeEEEEEecC-CCc
Confidence 0000110 011122346677763 3 454 666777899998888752 110 001122333333 236
Q ss_pred eEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC--CCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 362 ILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG--HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 362 v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
+-.+..+.. +|..+-++.-|.-|+.+... ......+....+ ....|-.|+.-.... +.+.+|+|
T Consensus 210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~---~~~~~~v~~~~g~~l~aDvEGlaly~~~~---------g~gYLivS 277 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEEDVGIWRYDAEPEG---GNDRTLVASADGDGLVADVEGLALYYGSD---------GKGYLIVS 277 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEESSCCC----S--EEEEEBSSSSB-S-EEEEEEEE-CC---------C-EEEEEE
T ss_pred ceEEEEecccCCEEEecCccEEEEEecCCCC---CCcceeeecccccccccCccceEEEecCC---------CCeEEEEE
Confidence 777778754 88889888777777766321 111233433322 456788888876432 23446777
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
.=.+++..+|+.
T Consensus 278 sQG~~sf~Vy~r 289 (381)
T PF02333_consen 278 SQGDNSFAVYDR 289 (381)
T ss_dssp EGGGTEEEEEES
T ss_pred cCCCCeEEEEec
Confidence 777888999975
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG2006 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.66 E-value=39 Score=34.52 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=46.1
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEE
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~ 153 (450)
..+.++......+++|..-|.+.+++.....-........ ..++..++.-+.|.++. ++.+-..|...+|.
T Consensus 151 Avc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~-------~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS 223 (1023)
T KOG2006|consen 151 AVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRD-------DDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWS 223 (1023)
T ss_pred ceeeeccchhhhheecccccceeehhhhhhccceeeeccc-------CccccccccccCcCCccceeeeeecccceEEec
Confidence 3344444478999999999999999876433221111111 12333366667777666 66666677788887
Q ss_pred cCCC
Q 041325 154 IDNN 157 (450)
Q Consensus 154 ~~~~ 157 (450)
....
T Consensus 224 ~~g~ 227 (1023)
T KOG2006|consen 224 NQGN 227 (1023)
T ss_pred cccc
Confidence 6554
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=81.49 E-value=37 Score=29.94 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=38.4
Q ss_pred eCCEEEEeeCCCcEEEecCCC--CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCC
Q 041325 84 AGKLLYGGSSNGEIRAWNRDP--NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNN 157 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~ 157 (450)
++++|+.|+++|...+. +.. ....+ ..+...|+++...+.. ++.++....++.+++..-
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~k--------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEK--------------LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEE--------------ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 34689999999855544 544 23322 2556789999998665 333344445999999654
|
Unpublished observations. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=81.15 E-value=14 Score=29.39 Aligned_cols=33 Identities=6% Similarity=-0.035 Sum_probs=27.1
Q ss_pred ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 409 PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 409 ~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.|.+++|+|.|- ....+.+|++...+|.|.||.
T Consensus 87 ~vv~~aWSP~Gl-------~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGL-------GPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCC-------CCCCceEEEEEcCCCeEEEEe
Confidence 788999999875 223466999999999999995
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=81.03 E-value=40 Score=30.03 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCEEEEeeC-----CCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeCCeEEEEeCCCe----EEEe
Q 041325 315 DGTVLYSGAC-----DRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVSNLLFSGSSDNT----IRIW 384 (450)
Q Consensus 315 ~~~~l~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~----v~iw 384 (450)
++++.+.|+. ...+..||+.+.+.. ....+.. ....-.++...+.+.+.|+.++. +.+|
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-----------~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWF-----------ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCee-----------ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEE
Confidence 5666666664 235778888765432 1111111 01111223445566677766543 4577
Q ss_pred eCCC
Q 041325 385 RRSS 388 (450)
Q Consensus 385 d~~~ 388 (450)
|..+
T Consensus 192 d~~~ 195 (323)
T TIGR03548 192 SPKK 195 (323)
T ss_pred ecCC
Confidence 7775
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=80.84 E-value=16 Score=29.03 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=25.4
Q ss_pred CceEEEEEccCC------CEEEEEeCCCcEEEEecCCC
Q 041325 211 DTVSALALSSDG------SLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 211 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~ 242 (450)
..+..++|+|.| -+|++.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999943 46888889999999987643
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.20 E-value=56 Score=31.17 Aligned_cols=70 Identities=11% Similarity=0.280 Sum_probs=42.6
Q ss_pred CCcceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCeEEEEeCCCeEEE
Q 041325 74 NSSYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDKLFSAHQDHKIRV 151 (450)
Q Consensus 74 h~~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~i 151 (450)
-..+|.++.+| ...+..|+.|| +..+|..+++........ ...+|..+.-. ...+..|+.+| |.+
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~-----------~dk~I~al~~d~qg~LWVGTdqG-v~~ 229 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPP-----------LDKAINALIADVQGRLWVGTDQG-VYL 229 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCc-----------chhhHHHHHHHhcCcEEEEeccc-eEE
Confidence 45678888885 56788888888 556677776655441111 11344444444 23388888777 666
Q ss_pred EEcCC
Q 041325 152 WKIDN 156 (450)
Q Consensus 152 w~~~~ 156 (450)
.+.+.
T Consensus 230 ~e~~G 234 (671)
T COG3292 230 QEAEG 234 (671)
T ss_pred Echhh
Confidence 66554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 450 | ||||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 6e-13 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-09 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-09 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-09 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 5e-09 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 5e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 5e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 5e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 5e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 5e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 7e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-08 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-08 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-08 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 9e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-07 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-07 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-07 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 4e-07 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 6e-07 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 7e-07 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 7e-07 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-06 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 1e-04 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-04 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-04 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-04 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-04 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-04 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 5e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 5e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 6e-04 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 6e-04 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 8e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 8e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 8e-04 |
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 450 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.98 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.98 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.89 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.88 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.88 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.87 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.86 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.86 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.85 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.81 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.81 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.79 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.74 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.72 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.71 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.71 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.71 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.71 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.69 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.68 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.67 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.66 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.66 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.65 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.64 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.64 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.6 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.59 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.57 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.57 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.56 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.56 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.56 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.56 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.55 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.54 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.54 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.51 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.51 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.5 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.48 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.44 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.43 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.43 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.42 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.41 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.41 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.4 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.39 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.35 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.35 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.35 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.33 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.33 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.3 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.3 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.29 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.26 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.26 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.24 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.22 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.21 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.21 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.18 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.18 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.17 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.17 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.16 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.15 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.1 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.08 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.07 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.06 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.02 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.02 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.99 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.98 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.95 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.95 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.91 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.91 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.88 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.86 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.83 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.82 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.8 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.8 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.77 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.77 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.7 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.69 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.67 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.67 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.66 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.66 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.64 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.64 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.61 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.61 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.57 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.55 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.49 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.48 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.47 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.41 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.39 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.38 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.38 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.28 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.27 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.27 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.22 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.21 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.19 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.18 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.15 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.13 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.11 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.11 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.07 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.04 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.04 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.99 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.96 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.95 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.94 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.92 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.81 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.77 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.75 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.7 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 97.7 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.67 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.64 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.62 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.59 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.57 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.55 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.53 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.45 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.44 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.43 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.4 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.39 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.29 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.28 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.22 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.19 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.18 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.17 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.13 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.91 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.91 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.79 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.65 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.64 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.6 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.51 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.49 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.37 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.32 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.3 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 96.22 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.22 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.16 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.03 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.85 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.71 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.64 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.58 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 95.5 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.34 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.26 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.84 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 94.75 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.57 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.51 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.41 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.17 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 94.09 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.97 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.57 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.56 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 93.1 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 93.09 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 92.97 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 92.25 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 92.12 | |
| 4d9s_A | 406 | UVB-resistance protein UVR8; UV resistance, UV-B p | 90.94 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 90.29 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 89.17 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 87.54 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 85.19 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 84.73 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 84.67 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 83.75 | |
| 3f7f_A | 729 | Nucleoporin NUP120; nuclear pore complex, macromol | 83.22 | |
| 1a12_A | 413 | RCC1, regulator of chromosome condensation 1; guan | 83.01 | |
| 3of7_A | 473 | Regulator of chromosome condensation; beta-propell | 82.12 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=359.36 Aligned_cols=286 Identities=22% Similarity=0.451 Sum_probs=253.3
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.....+. +|..+|++++| ++.+|++|+.||+|+|||+.+++.... +.+|.+.|.+++|+++.
T Consensus 99 ~~~~~l~--gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~------------l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 99 PEKYALS--GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT------------LKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp SCSCEEE--CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE------------ECCCSSCEEEEEECTTSSE
T ss_pred CceEeec--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE------------EeccCCcEEEEEEcCCCCE
Confidence 3456677 99999999999 789999999999999999999886655 77999999999999776
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.||+|++||+.+.+ ++. .+.+|...|.+++|+
T Consensus 165 l~sgs~D~~i~iwd~~~~~----------------~~~---------------------------~~~~h~~~V~~v~~~ 201 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGFE----------------CIR---------------------------TMHGHDHNVSSVSIM 201 (410)
T ss_dssp EEEEETTSCCCEEETTSSC----------------EEE---------------------------CCCCCSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEeCCCCc----------------eeE---------------------------EEcCCCCCEEEEEEe
Confidence 9999999999999998762 222 233688999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
|++++|++|+.|+.|++||+.+++++..+. .|...|.++.++++ ..++++|+.|+.|++||+++++ ....
T Consensus 202 p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~--------~~~~ 271 (410)
T 1vyh_C 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKE--------CKAE 271 (410)
T ss_dssp SSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC--------EEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCCc--------eeeE
Confidence 999999999999999999999999999988 89999999999984 4489999999999999997765 4556
Q ss_pred HhhcccceEEEEEcCC--------------------CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 300 LEKHKSAVTALALSTD--------------------GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~--------------------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+..|...|.+++|+|+ +.+|++|+.|+.|++||+++++++ ..+.+|.
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-------------~~~~~h~ 338 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-------------MTLVGHD 338 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE-------------EEEECCS
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE-------------EEEECCC
Confidence 7789999999999996 678999999999999999988755 5677899
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
..|.+++|++ .+|++|+.||.|++||+.++ +++..+.+|...|++++|+|++. +|++
T Consensus 339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~-------------~l~s 397 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--------RCMKTLNAHEHFVTSLDFHKTAP-------------YVVT 397 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTS--------CCCEEEECCSSCEEEEEECSSSS-------------CEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEcCCCC-------------EEEE
Confidence 9999999984 59999999999999999864 66788899999999999999999 8999
Q ss_pred cccCCcEEEEEeC
Q 041325 438 GSLDCEIKIWQIR 450 (450)
Q Consensus 438 ~~~Dg~i~iw~l~ 450 (450)
|+.||+|++|++|
T Consensus 398 gs~D~~i~vW~~r 410 (410)
T 1vyh_C 398 GSVDQTVKVWECR 410 (410)
T ss_dssp EETTSEEEEEC--
T ss_pred EeCCCcEEEEeCC
Confidence 9999999999986
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-48 Score=343.40 Aligned_cols=293 Identities=20% Similarity=0.273 Sum_probs=252.1
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE------eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI------AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~------d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
...+.+.+.+.++ +|.+.|++++| ++.+|+||+.||+|+||++...+.... ..+.+|...|.
T Consensus 17 ~~~~~g~~~~~~~--~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------~~l~gh~~~v~ 84 (321)
T 3ow8_A 17 GTNQYGILFKQEQ--AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------WSLEGHQLGVV 84 (321)
T ss_dssp ----CEEEEEETT--SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------EEECCCSSCEE
T ss_pred hhhhhhheeeecc--cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------eeeccCCCCEE
Confidence 3444556666666 99999999999 267999999999999999876653221 23679999999
Q ss_pred EEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 132 SLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 132 ~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
+++|+++. +++++.|++|++||+.+++. +. .+..|
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~----------------~~---------------------------~~~~~ 121 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQ----------------IK---------------------------SIDAG 121 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEE----------------EE---------------------------EEECC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCE----------------EE---------------------------EEeCC
Confidence 99999876 99999999999999998732 21 22356
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
...+.+++|+|++++|++|+.||.|++||+++++....+. .+...+.+++|+|++ .+|++|+.||.|++||+++++
T Consensus 122 ~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~-- 197 (321)
T 3ow8_A 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGK-- 197 (321)
T ss_dssp TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--
T ss_pred CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--
Confidence 7788999999999999999999999999999999888887 788899999999954 589999999999999998766
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.. ..+.+|...|.+++|++
T Consensus 198 ------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 198 ------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-------------GTLSGHASWVLNVAFCP 258 (321)
T ss_dssp ------EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-------------EEECCCSSCEEEEEECT
T ss_pred ------EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-------------EEEcCCCCceEEEEECC
Confidence 56677789999999999999999999999999999999987644 56788999999999985
Q ss_pred --CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 370 --NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 370 --~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
.+|++++.|+.|++||+.++ +++..+.+|...|.+++|+|++. +|++++.||.|++|
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~--------~~~~~~~~h~~~v~~v~~s~~g~-------------~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTR--------TCVHTFFDHQDQVWGVKYNGNGS-------------KIVSVGDDQEIHIY 317 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSS-------------EEEEEETTCCEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCC--------EEEEEEcCCCCcEEEEEECCCCC-------------EEEEEeCCCeEEEE
Confidence 49999999999999999874 78889999999999999999999 99999999999999
Q ss_pred Ee
Q 041325 448 QI 449 (450)
Q Consensus 448 ~l 449 (450)
|+
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 96
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=337.49 Aligned_cols=290 Identities=19% Similarity=0.313 Sum_probs=249.5
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+..++|+ +|.+.|++++| |+++|++|+.||+|++||+.+++.... +..|...|.+++|+|+.
T Consensus 45 ~~~~~~l~--gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------~~~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 45 MRTRRTLR--GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA------------IPLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE------------EECSSSCEEEEEECTTSS
T ss_pred chhheeec--CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE------------eecCCccEEEEEECCCCC
Confidence 35667777 99999999999 799999999999999999998876655 66889999999999877
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.|+.|++|++.+.... ......+.+|.+.|.++.|
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~---------------------------------------~~~~~~~~~h~~~v~~~~~ 151 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGN---------------------------------------VRVSRELAGHTGYLSCCRF 151 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBS---------------------------------------CEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECccCCCc---------------------------------------ceeEEEecCCCccEEEEEE
Confidence 999999999999999875210 0111234579999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
++++. +++++.|+.|++||+++++.+..+. .|...|.+++|+|+ ..++++|+.||.|++||++++. ...
T Consensus 152 ~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~--------~~~ 220 (340)
T 1got_B 152 LDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGM--------CRQ 220 (340)
T ss_dssp EETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCS--------EEE
T ss_pred CCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCe--------eEE
Confidence 98775 8899999999999999999998887 89999999999984 4589999999999999997765 566
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEe
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS 376 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~ 376 (450)
.+.+|...|.+++|+|++++|++|+.||.|++||+++++.+. ......+...|++++|++ ++|++|+
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-----------~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-----------TYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------EECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-----------EEccCCcccceEEEEECCCCCEEEEEC
Confidence 677899999999999999999999999999999999876542 112233445799999985 4999999
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.||.|++||+.++ ..+..+.+|...|.+++|+|++. +|+||+.||.|+|||
T Consensus 290 ~d~~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~dg~-------------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 290 DDFNCNVWDALKA--------DRAGVLAGHDNRVSCLGVTDDGM-------------AVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECTTSS-------------CEEEEETTSCEEEEC
T ss_pred CCCeEEEEEcccC--------cEeeEeecCCCcEEEEEEcCCCC-------------EEEEEcCCccEEecC
Confidence 9999999999864 67788899999999999999999 899999999999997
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=340.57 Aligned_cols=294 Identities=19% Similarity=0.241 Sum_probs=234.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKI 149 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i 149 (450)
.|...|.+++| ||++|++++ |+++++||......... ..............|...|.+++|+++. |++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDP-CAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSG-GGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccc-cccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 67788999999 899999887 78889997321110000 0001111112244567789999999877 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
++||+++++... . ......+|.+.|++++|+|++++|++|+
T Consensus 106 ~lWd~~~~~~~~----------------~-----------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs 146 (344)
T 4gqb_B 106 ELWELDENETLI----------------V-----------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGS 146 (344)
T ss_dssp EEEEECTTSSCE----------------E-----------------------EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeccCCCcee----------------E-----------------------eeccccCCCCCEEEEEECCCCCEEEEEe
Confidence 999999873211 0 1112347999999999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccce
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAV 307 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i 307 (450)
.|++|++||+++++++..+. +|...|.+++|++++..++++++.|+.|++||+++++ ....+ ..+...+
T Consensus 147 ~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--------~~~~~~~~~~~~~~ 217 (344)
T 4gqb_B 147 KDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--------PASQIGCSAPGYLP 217 (344)
T ss_dssp TTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--------CEEECC----CCCE
T ss_pred CCCeEEEEECCCCcEEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccc--------eeeeeecceeeccc
Confidence 99999999999999999998 8999999999999777789999999999999998765 22222 3456678
Q ss_pred EEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEE
Q 041325 308 TALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRI 383 (450)
Q Consensus 308 ~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~i 383 (450)
.+++|+| ++++|++|+.||.|++||+++++++ ..+.+|...|++++|+++ +|++|+.|++|+|
T Consensus 218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~-------------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV-------------LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEESCC--CC-------------EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred eeeeecCCCCcceEEeccCCcEEEEECCCCcEE-------------EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 9999999 5678899999999999999988755 567889999999999843 7999999999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
||+.++ + +..+.+|.+.|++++|+|+++. +|+|||.||+|++|++.
T Consensus 285 wd~~~~--------~-~~~~~~H~~~V~~v~~sp~~~~------------llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 285 LDSSLS--------E-LFRSQAHRDFVRDATWSPLNHS------------LLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ECTTCC--------E-EEEECCCSSCEEEEEECSSSTT------------EEEEEETTSCEEEEECC
T ss_pred EECCCC--------c-EEEEcCCCCCEEEEEEeCCCCe------------EEEEEcCCCeEEEEECC
Confidence 999874 3 4457899999999999999874 78899999999999973
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=334.08 Aligned_cols=293 Identities=21% Similarity=0.310 Sum_probs=250.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+..++|+ ||...|++++| |+++|+||+.||+|+|||..+++.... +..|...|.+++|+|++
T Consensus 55 ~~~~~l~--gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~------------~~~~~~~v~~~~~sp~g~~ 120 (354)
T 2pbi_B 55 KTRRTLK--GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA------------VTMPCTWVMACAYAPSGCA 120 (354)
T ss_dssp CEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE------------EECSSSCCCEEEECTTSSE
T ss_pred EEEEEec--CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE------------EecCCCCEEEEEECCCCCE
Confidence 5677788 99999999999 799999999999999999988776554 56788899999999887
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++|+.|+.+++|++....... .......+..|.+.|.+++|+
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~-------------------------------------~~~~~~~~~~h~~~v~~~~~~ 163 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNEN-------------------------------------MAAKKKSVAMHTNYLSACSFT 163 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCC-------------------------------------SGGGCEEEEECSSCEEEEEEC
T ss_pred EEEeeCCCCEEEEEEecccccc-------------------------------------ccccceeeeccCCcEEEEEEe
Confidence 9999999999999987542100 001122345799999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC-CcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN-DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
|++..|++++.|++|++||+++++.+..+. .|...|.++.++|.. ..+|++|+.||.|++||+++++ .+.
T Consensus 164 ~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--------~~~ 234 (354)
T 2pbi_B 164 NSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--------CVQ 234 (354)
T ss_dssp SSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--------EEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--------EEE
Confidence 999999999999999999999999999988 899999999999854 3589999999999999998766 566
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEe
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGS 376 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 376 (450)
.+..|...|.+++|+|++++|++|+.|+.|++||++.++.+. ......+...+.+++|+ +.+|++|+
T Consensus 235 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-----------IYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------EECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-----------EEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 677899999999999999999999999999999999876442 11122334568899998 45999999
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.|+.|++||+.++ ..+..+.+|...|++++|+|++. +|++|+.||+|+||+
T Consensus 304 ~d~~i~vwd~~~~--------~~~~~l~~h~~~v~~l~~spdg~-------------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKG--------SRVSILFGHENRVSTLRVSPDGT-------------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTC--------SEEEEECCCSSCEEEEEECTTSS-------------CEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCC--------ceEEEEECCCCcEEEEEECCCCC-------------EEEEEcCCCCEEecC
Confidence 9999999999874 56778899999999999999999 899999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=337.78 Aligned_cols=289 Identities=18% Similarity=0.212 Sum_probs=234.8
Q ss_pred CCCcceEEEEE--eCCEEEEeeC------CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSS------NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~ 143 (450)
+|...|++++| ||++||+|+. ||.|++|+..++..... ......+|...|.+++|+++. ++++
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~--------~~~~~~~~~~~V~~~~~s~d~~~l~~ 111 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES--------LCTAGVQTEAGVTDVAWVSEKGILVA 111 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG--------GCSEEEECSSCEEEEEEETTTEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee--------EecccCCCCCCEEEEEEcCCCCEEEE
Confidence 89999999999 8999999997 78899999877653222 112345788999999999877 8899
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
+.||+|++||+.+++.. .. ......+|.+.|.+++|+|+++
T Consensus 112 s~dg~v~lWd~~~~~~~----------------~~-----------------------~~~~~~~h~~~V~~v~~spdg~ 152 (357)
T 4g56_B 112 SDSGAVELWEILEKESL----------------LV-----------------------NKFAKYEHDDIVKTLSVFSDGT 152 (357)
T ss_dssp ETTSCEEEC------------------------CC-----------------------CCEEECCCSSCEEEEEECSSSS
T ss_pred ECCCEEEEeecccccee----------------EE-----------------------EeeccCCCCCCEEEEEECCCCC
Confidence 99999999999877321 00 1112336899999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
+|++|+.|+.|++||+++++.+..+. .|...|.+++|+++++.++++++.||.|++||+++++.. .......+
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~------~~~~~~~~ 225 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA------TRIDFCAS 225 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB------CBCCCTTC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee------eeeeeccc
Confidence 99999999999999999999999988 899999999999877778999999999999999876511 11223456
Q ss_pred ccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCC
Q 041325 304 KSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDN 379 (450)
Q Consensus 304 ~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg 379 (450)
...+.+++|+|+ +.+|++|+.|+.|++||+++++.+ ..+.+|...|++++|++ .+|++|+.||
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~-------------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-------------QTSAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC-------------EEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEe-------------EEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 778999999997 568999999999999999987644 56788999999999984 3799999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe-cCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV-DSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|+|||++++ +++. ..+|...|++|+|+| ++. +|+|||.||+|++|++.
T Consensus 293 ~i~iwd~~~~--------~~~~-~~~H~~~V~~vafsP~d~~-------------~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 293 TVAVLDADFS--------EVFR-DLSHRDFVTGVAWSPLDHS-------------KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CEEEECTTSC--------EEEE-ECCCSSCEEEEEECSSSTT-------------EEEEEETTSCEEEEECC
T ss_pred EEEEEECCCC--------cEeE-ECCCCCCEEEEEEeCCCCC-------------EEEEEcCCCeEEEEECC
Confidence 9999999874 4444 447999999999998 677 99999999999999973
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=324.23 Aligned_cols=287 Identities=17% Similarity=0.299 Sum_probs=243.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+..++|+ +|.+.|++++| ++++|++|+.||.|++||+.++..... +..|..+|.+++|+++.
T Consensus 4 ~~~~~~~--~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~ 69 (304)
T 2ynn_A 4 DIKKTFS--NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS------------IQVTETPVRAGKFIARKNW 69 (304)
T ss_dssp CCEEEEE--EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEEEGGGTE
T ss_pred eeEEeec--CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE------------eeccCCcEEEEEEeCCCCE
Confidence 5677888 99999999999 899999999999999999998876555 67899999999999766
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.|++|++||+.+++. ...+.+|.+.|.+++|+
T Consensus 70 l~s~s~d~~i~vwd~~~~~~-------------------------------------------~~~~~~h~~~v~~~~~~ 106 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEK-------------------------------------------VVDFEAHPDYIRSIAVH 106 (304)
T ss_dssp EEEEETTSEEEEEETTTCCE-------------------------------------------EEEEECCSSCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCcE-------------------------------------------EEEEeCCCCcEEEEEEc
Confidence 99999999999999998732 22345799999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEE-EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
|++++|++|+.|++|++||++++..+ ..+. +|...|.+++|+|.+..+|++|+.|+.|++||++... ...
T Consensus 107 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~--------~~~ 177 (304)
T 2ynn_A 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------PNF 177 (304)
T ss_dssp SSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS--------CSE
T ss_pred CCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------ccc
Confidence 99999999999999999999887444 4454 8999999999998666799999999999999997654 122
Q ss_pred h-HhhcccceEEEEEcC--CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE
Q 041325 299 T-LEKHKSAVTALALST--DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF 373 (450)
Q Consensus 299 ~-~~~~~~~i~~l~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 373 (450)
. ...+...+..+.|+| ++++|++|+.|+.|++||+++++++ ..+.+|...|.+++|+++ +|+
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-------------~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-------------ATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE-------------EEEECCSSCEEEEEECSSSSEEE
T ss_pred eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc-------------eeeCCCCCCEEEEEECCCCCEEE
Confidence 2 234567889999987 7789999999999999999988755 577889999999999865 899
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|+.||.|++||+.++ +++..+..|...+.+++|+|++.. .++++|+.|| +.+|++
T Consensus 245 s~s~Dg~i~iWd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTY--------KVEKTLNVGLERSWCIATHPTGRK-----------NYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEETTSCEEEEETTTC--------CEEEEECCSSSSEEEEEECTTCGG-----------GCEEEEETTE-EEEEEC
T ss_pred EEcCCCeEEEEECCCC--------ceeeeccCCCccEEEEEECCCCCc-----------eEEEEecCCc-eEEEEe
Confidence 9999999999999874 778889999999999999998752 1477776665 677765
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=327.92 Aligned_cols=317 Identities=22% Similarity=0.338 Sum_probs=245.3
Q ss_pred cceeeeEEeecCCCc-ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 62 EHQCSATLKVKGNSS-YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~-~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
..++++++. +|.. .|.+++| ||++||+|+.||+|+|||+.++..... .....+|...|.+++|+|+
T Consensus 4 ~~~~~~~~~--~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~---------~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 4 SLVLLGRVP--AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK---------SVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp CEEEEEEEC--CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE---------EEECSSCSSCEEEEEECTT
T ss_pred cEEEeeeec--CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee---------eeeccccCCcEEEEEECCC
Confidence 456788888 9988 9999999 899999999999999999887653322 0123589999999999987
Q ss_pred e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 139 K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 139 ~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
. |++|+.|++|++|++..... . ....+.+|.+.|.++
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~--------------~---------------------------~~~~~~~h~~~v~~v 111 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDF--------------E---------------------------CVTTLEGHENEVKSV 111 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-E--------------E---------------------------EEEEECCCSSCEEEE
T ss_pred CCEEEEEECCCcEEEEEccCCCe--------------E---------------------------EEEEccCCCCCceEE
Confidence 6 99999999999999987621 1 122344799999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
+|+|++++|++|+.|+.|++||+.++. ++..+. .|...|.+++|+|++ .+|++++.|+.|++||.+.++
T Consensus 112 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~------ 183 (345)
T 3fm0_A 112 AWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDD------ 183 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTE------
T ss_pred EEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCC------
Confidence 999999999999999999999998763 344555 789999999999954 489999999999999986543
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee--CCCCCCceeeeccccC-CccceEEEEEeC-
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD--GDDDSGHMVLKGALRG-HTKAILCLAVVS- 369 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~v~~~~~~~- 369 (450)
......+.+|...|++++|+|++++|++|+.|+.|++||......... .............+.+ |...|.+++|++
T Consensus 184 ~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 113456678999999999999999999999999999999753321100 0000111112223333 888999999985
Q ss_pred -CeEEEEeCCCeEEEeeCCCCccccCCCcee-EEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 370 -NLLFSGSSDNTIRIWRRSSSVTDHQKGYSC-LAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 370 -~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
..|++++.|+.|++|+.............. .....+|...|++++|+|++.. +|+||+.||+|++|
T Consensus 264 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~------------~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG------------LLASCSDDGEVAFW 331 (345)
T ss_dssp TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT------------EEEEEETTSCEEEE
T ss_pred CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce------------EEEEcCCCCcEEEE
Confidence 499999999999999987643221222222 2334689999999999998743 89999999999999
Q ss_pred EeC
Q 041325 448 QIR 450 (450)
Q Consensus 448 ~l~ 450 (450)
+++
T Consensus 332 ~~~ 334 (345)
T 3fm0_A 332 KYQ 334 (345)
T ss_dssp EEC
T ss_pred Eec
Confidence 974
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=349.88 Aligned_cols=370 Identities=19% Similarity=0.288 Sum_probs=270.3
Q ss_pred CcccCCCccCCCCCc-cccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCE
Q 041325 11 CRRNKEPKFQPSSNH-LQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKL 87 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~ 87 (450)
...+..+.|+|+... +.+.+.+..+.. +...++++++++. +|...|++++| |+++
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~l--------------------wd~~~~~~~~~l~--~H~~~V~~v~fspdg~~ 204 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAI--------------------FEGPPFKFKSTFG--EHTKFVHSVRYNPDGSL 204 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEE--------------------EETTTBEEEEEEC--CCSSCEEEEEECTTSSE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEE--------------------EECCCCeEeeeec--cccCceEEEEECCCCCE
Confidence 335556667776553 555555544433 3334567788888 99999999999 7999
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
||+|+.||+|++||+.+++......... ....+|.+.|.+++|+|++ |++++.|++|++||+.+++.......
T Consensus 205 las~s~D~~i~lwd~~~g~~~~~~~~~~-----~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 205 FASTGGDGTIVLYNGVDGTKTGVFEDDS-----LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEEECBCTT-----SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCcEEEEECCCCcEeeeecccc-----ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 9999999999999999887665421100 0012799999999999876 99999999999999998865443322
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecc----eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK----KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (450)
..........+.. .....+....++.+.++... ...+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 280 ~~~~~~~~~~~~~----~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 280 GTRIEDQQLGIIW----TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp CSSGGGCEEEEEE----CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCccceeEEEEE----cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 2111110011111 23344445555666665432 335678999999999999999999999999999999987
Q ss_pred CeEEEEeecc----------------------------------------------------------------------
Q 041325 242 FRCLESVKNA---------------------------------------------------------------------- 251 (450)
Q Consensus 242 ~~~~~~~~~~---------------------------------------------------------------------- 251 (450)
++....+...
T Consensus 356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 6554332111
Q ss_pred -----------cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEE
Q 041325 252 -----------HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY 320 (450)
Q Consensus 252 -----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 320 (450)
+...+.+++|+|+ ..++++|+.|+.|++||+..+.. ..... .+|...|++++|+|||++|+
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spd-g~~lasgs~D~~v~lwd~~~~~~------~~~~~-~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASV------SEVKT-IVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEE------EEEEE-EECSSCEEEEEECTTSSEEE
T ss_pred EEeCCceeeeecCCCceEEEEeCC-CCEEEEeCCCCeEEEEEccCCce------eeeec-cCCCCceEEEEECCCCCEEE
Confidence 1234667888884 44899999999999999865431 01222 56889999999999999999
Q ss_pred EeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCc
Q 041325 321 SGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 321 ~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~ 397 (450)
+++.|+.|++||+.+ ++.. .......|...|.+++|+++ +|++|+.|++|++||+..+. .
T Consensus 508 s~s~d~~v~~w~~~~~~~~~-----------~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~------~ 570 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELA-----------HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS------D 570 (611)
T ss_dssp EEETTSCEEEEEGGGTTEES-----------CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT------S
T ss_pred EEcCCCCEEEEEcCCCCcee-----------eeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc------c
Confidence 999999999999987 4322 11123459999999999854 99999999999999998641 0
Q ss_pred eeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 398 SCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 398 ~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..+..+.+| ...|++++|+|++. |++++.|++|++|++.
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~d~~--------------l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLNETT--------------IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEETTE--------------EEEEETTSCEEEEECC
T ss_pred ccchhhccCcccCeeEEEEcCCCE--------------EEEecCCCCEEEEecc
Confidence 122567789 89999999999875 9999999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=338.81 Aligned_cols=309 Identities=17% Similarity=0.296 Sum_probs=252.8
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
+......+.++|+ ||.+.|++++| ++++|+||+.||+|+|||+.+++.... +.+|...|.+++|
T Consensus 51 ~~~~~~~~~~~l~--gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~------------~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 51 FNPTDLVCCRTLQ--GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA------------IKLHCPWVMECAF 116 (380)
T ss_dssp CCCCCCEEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE------------EECCCTTCCCCEE
T ss_pred cccceeEEeeccc--ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE------------EecCCCCEEEEEE
Confidence 3444567888888 99999999999 799999999999999999988876555 6789999999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+|++ |++|+.|+.|++|++....... .. ......+.+|.+.|
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~---------------~~---------------------~~~~~~~~gh~~~v 160 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRD---------------GN---------------------MPVSRVLTGHKGYA 160 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCC---------------CS---------------------STTCCBCCCCSSCC
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCcccc---------------CC---------------------ccceeeccCCCcce
Confidence 9887 9999999999999997652100 00 01112345799999
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEEee----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 214 SALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLESVK----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 214 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
.++.|.|+ +..|++|+.|++|++||+.+++.+..+. ..|...|.++.+++.+..++++|+.||.|++||++...
T Consensus 161 ~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~- 239 (380)
T 3iz6_a 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS- 239 (380)
T ss_dssp CCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-
T ss_pred EEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-
Confidence 99999996 5679999999999999999999887762 36888999999988677799999999999999987432
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
..+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..... ....+...|++++|+
T Consensus 240 ------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 240 ------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD------RNDNELPIVTSVAFS 307 (380)
T ss_dssp ------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS------SSCCSSCSCSEEEEC
T ss_pred ------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc------ccccccCceEEEEEC
Confidence 14566778999999999999999999999999999999999876633221110 112233458899997
Q ss_pred --CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe----cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCC
Q 041325 369 --SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL----EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442 (450)
Q Consensus 369 --~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 442 (450)
+++|++|+.||.|++||+..+ +.+..+ .+|.+.|++++|+|++. +|+||+.||
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~--------~~~~~~~~~~~~h~~~v~~l~~s~dg~-------------~l~sgs~D~ 366 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLA--------EMVLNLGTLQNSHEGRISCLGLSSDGS-------------ALCTGSWDK 366 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTC--------CEEEEECCSCSSCCCCCCEEEECSSSS-------------EEEEECTTS
T ss_pred CCCCEEEEEECCCCEEEEECCCC--------ceEEEEecccCCCCCceEEEEECCCCC-------------EEEEeeCCC
Confidence 459999999999999998864 444444 68999999999999999 999999999
Q ss_pred cEEEEEeC
Q 041325 443 EIKIWQIR 450 (450)
Q Consensus 443 ~i~iw~l~ 450 (450)
+|++|++.
T Consensus 367 ~i~iW~~~ 374 (380)
T 3iz6_a 367 NLKIWAFS 374 (380)
T ss_dssp CEEEEECC
T ss_pred CEEEEecC
Confidence 99999974
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-45 Score=323.96 Aligned_cols=309 Identities=18% Similarity=0.299 Sum_probs=233.5
Q ss_pred cceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEE-ec-CCCceEEEEEeCCe
Q 041325 62 EHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVA-TG-NGDAVKSLVVLGDK 139 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~~~~ 139 (450)
..+++++|+ +|...|.+++|++.+||+|+.||.|++||+..+..... ..+ .+ |...|.+++|+|+.
T Consensus 3 ~~~~~~~~~--~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~----------~~~~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 3 SINLIKSLK--LYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI----------DVLDETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp CCEEEEEEE--CCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE----------EEECTTCCCSCEEEEEECTTS
T ss_pred ccccceeec--cCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE----------EEEecCCccCCEEEEEECCCC
Confidence 456788888 99999999999877999999999999999987542211 012 23 99999999999876
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
|++|+.|++|++||++...... . .......+.+|.+.|.+++
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~---------~---------------------------~~~~~~~~~~h~~~V~~v~ 114 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRT---------F---------------------------EMDLLAIIEGHENEVKGVA 114 (330)
T ss_dssp SEEEEEETTSCEEEEEC----------------C---------------------------CCEEEEEEC----CEEEEE
T ss_pred CEEEEEeCCCcEEEEEcccCcCcc---------c---------------------------cceeEEEEcCCCCcEEEEE
Confidence 9999999999999986431000 0 0011223457999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCC----CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSD----FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
|+|++++|++|+.|+.|++||+.. .+++..+. .|...|.+++|+|+ ..+|++++.|+.|++||...+.
T Consensus 115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~------ 186 (330)
T 2hes_X 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDD------ 186 (330)
T ss_dssp ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTE------
T ss_pred ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCC------
Confidence 999999999999999999999943 24566666 79999999999995 4589999999999999986542
Q ss_pred chhhhhHhhcccceEEEEEcCC--CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeC-
Q 041325 294 HSLVQTLEKHKSAVTALALSTD--GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVS- 369 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~--~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~- 369 (450)
...+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..+... ..........+.. |...|.+++|++
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED-----DQQEWVCEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT-----SCEEEEEEEECCSCCSSCEEEEEECTT
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc-----ccceeEEeeecccccccceEEEEEcCC
Confidence 1245677889999999999998 778999999999999998754210 0011112233444 899999999984
Q ss_pred CeEEEEeCCCeEEEeeCCCCccccCCCceeE-EEecCCCc-ceEEEEEEe--cCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCL-AVLEGHRR-PVKCLTAVV--DSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~h~~-~v~~l~~~~--~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
.+|++++.||.|++||..++ ..+.. ....+|.. .|.+++|+| ++. +|++|+.||+|+
T Consensus 262 ~~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~-------------~las~s~Dg~v~ 322 (330)
T 2hes_X 262 GLIASVGADGVLAVYEEVDG------EWKVFAKRALCHGVYEINVVKWLELNGKT-------------ILATGGDDGIVN 322 (330)
T ss_dssp SCEEEEETTSCEEEEEEETT------EEEEEEEESCTTTTSCEEEEEEC-----C-------------CEEEEETTSEEE
T ss_pred CEEEEEeCCCEEEEEEcCCC------ceEEEeccccccccceEEEEEEecCCCce-------------EEEEecCCCcEE
Confidence 48999999999999998753 11223 33467887 899999999 567 899999999999
Q ss_pred EEEeC
Q 041325 446 IWQIR 450 (450)
Q Consensus 446 iw~l~ 450 (450)
||+++
T Consensus 323 ~W~~~ 327 (330)
T 2hes_X 323 FWSLE 327 (330)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 99974
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=319.17 Aligned_cols=289 Identities=21% Similarity=0.448 Sum_probs=244.4
Q ss_pred ccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
+...+..++. +|...|++++| ++++|++|+.||.|++|++.+++.... +.+|...|.+++|+++
T Consensus 11 ~~~~~~~~~~--gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~------------~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 11 PNYALKFTLA--GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT------------ISGHKLGISDVAWSSD 76 (312)
T ss_dssp CCCEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------------ECCCSSCEEEEEECTT
T ss_pred CCceeEEEEc--ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh------------hccCCCceEEEEEcCC
Confidence 4456677777 99999999999 799999999999999999988876655 6789999999999987
Q ss_pred e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 139 K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 139 ~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
. |++++.||.|++||+++++. ...+.+|...|.++
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~-------------------------------------------~~~~~~~~~~v~~~ 113 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKC-------------------------------------------LKTLKGHSNYVFCC 113 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCE-------------------------------------------EEEEECCSSCEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCcE-------------------------------------------EEEEcCCCCCEEEE
Confidence 6 99999999999999988732 12334688899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
+|+|++++|++|+.|+.|++||+++++.+..+. .|...|.+++|+|+ ..++++++.||.|++||+++++ .
T Consensus 114 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~--------~ 183 (312)
T 4ery_A 114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQ--------C 183 (312)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC--------E
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------e
Confidence 999999999999999999999999999988887 78899999999984 4489999999999999997765 2
Q ss_pred hhh-HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE--EEEe---CC
Q 041325 297 VQT-LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV---SN 370 (450)
Q Consensus 297 ~~~-~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~---~~ 370 (450)
+.. ...+...+..++|+|++++|++++.||.|++||+++++.+ ..+.+|...+.+ ..+. +.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-------------KTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-------------EEECSSCCSSSCCCEEEECSSSC
T ss_pred eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-------------EEEEecCCceEEEEEEEEeCCCc
Confidence 222 2345678999999999999999999999999999988755 344455443322 2222 55
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc--cCCcEEEEE
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS--LDCEIKIWQ 448 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~--~Dg~i~iw~ 448 (450)
+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++. ++++++ .|+.|++|+
T Consensus 251 ~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~-------------~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQTK--------EIVQKLQGHTDVVISTACHPTEN-------------IIASAALENDKTIKLWK 309 (312)
T ss_dssp EEEECCTTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECSSSS-------------EEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCEEEEEECCCc--------hhhhhhhccCCcEEEEeecCcCC-------------ceEEEEccCCccEEEec
Confidence 9999999999999999874 67888999999999999999999 899886 699999998
Q ss_pred eC
Q 041325 449 IR 450 (450)
Q Consensus 449 l~ 450 (450)
..
T Consensus 310 ~d 311 (312)
T 4ery_A 310 SD 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 63
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=320.59 Aligned_cols=292 Identities=21% Similarity=0.370 Sum_probs=237.4
Q ss_pred ccceeeeEEeecCCCcceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
+...+..+|+ ||.+.|++++| + +++|++|+.||+|++|++........ .....+.+|...|.+++|++
T Consensus 5 ~~~~l~~~l~--gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 5 EVLVLRGTLE--GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG-------VPVRSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEEEEEEEC--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE-------EEEEEEECCSSCEEEEEECT
T ss_pred eEEEEEEEEc--cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc-------ccceEEeCCcccEEEEEECC
Confidence 3456677777 99999999999 2 48999999999999999864332110 11234789999999999998
Q ss_pred Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 138 DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 138 ~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
+. |++|+.|++|++||+.+++. ...+.+|...|.+
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~-------------------------------------------~~~~~~h~~~v~~ 112 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGET-------------------------------------------YQRFVGHKSDVMS 112 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEE-------------------------------------------EEEEECCSSCEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCe-------------------------------------------eEEEccCCCcEEE
Confidence 76 99999999999999998731 2234579999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC-----CcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN-----DGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
++|+|++.+|++|+.|+.|++||++ ++++..+. .|...|.++.+.|.. ...+++++.|+.|++||+++.+
T Consensus 113 ~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--- 187 (319)
T 3frx_A 113 VDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--- 187 (319)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE---
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch---
Confidence 9999999999999999999999997 45666666 799999999999743 2379999999999999997655
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+ ..+. +...|.+++|+++
T Consensus 188 -----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~-~~~~v~~~~~sp~ 248 (319)
T 3frx_A 188 -----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-------------YTLS-AQDEVFSLAFSPN 248 (319)
T ss_dssp -----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-------------EEEE-CCSCEEEEEECSS
T ss_pred -----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEec-CCCcEEEEEEcCC
Confidence 45566789999999999999999999999999999999988755 2333 3467999999965
Q ss_pred --eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe--------cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 371 --LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL--------EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
++++++ ++.+++|++... ..+..+ ..|...+.+++|+|+++ +|++|+.
T Consensus 249 ~~~la~~~-~~~i~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-------------~l~sg~~ 306 (319)
T 3frx_A 249 RYWLAAAT-ATGIKVFSLDPQ--------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-------------TLFAGYT 306 (319)
T ss_dssp SSEEEEEE-TTEEEEEEETTE--------EEEEEECCCCTTCCGGGCCCEEEEEECTTSS-------------EEEEEET
T ss_pred CCEEEEEc-CCCcEEEEeCcC--------eeeeccCccccccccCcCcceeEEEECCCCC-------------EEEEeec
Confidence 666665 556999998863 233333 23567799999999999 9999999
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
||.|+|||+.
T Consensus 307 Dg~i~vWd~~ 316 (319)
T 3frx_A 307 DNVIRVWQVM 316 (319)
T ss_dssp TSCEEEEEEE
T ss_pred CceEEEEEEe
Confidence 9999999973
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=323.17 Aligned_cols=315 Identities=24% Similarity=0.402 Sum_probs=239.4
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCc------ceeEEecCCCceEEEEEeCCe--EEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDH------ANVVATGNGDAVKSLVVLGDK--LFS 142 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~------~~~~~~~h~~~v~~l~~~~~~--l~s 142 (450)
+|...|+|++| ||++||+|+ ++.+++|++.+++............ .......+...|.+++|++++ |++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 69999999999 899999987 6899999999988765532211000 000111234469999999876 999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
|+.||+|++||+++++. ...+.+|...|.+++|+|++
T Consensus 141 ~~~d~~i~iwd~~~~~~-------------------------------------------~~~~~~h~~~v~~~~~~p~~ 177 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKI-------------------------------------------VMILQGHEQDIYSLDYFPSG 177 (393)
T ss_dssp EETTSCEEEEETTTTEE-------------------------------------------EEEECCCSSCEEEEEECTTS
T ss_pred EcCCCeEEEEECCCCcE-------------------------------------------EEEEccCCCCEEEEEEcCCC
Confidence 99999999999988721 12344799999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
++|++++.|++|++||++++++...+. +...+.+++++|.+..++++|+.||.|++||++++...... ........+
T Consensus 178 ~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~~ 254 (393)
T 1erj_A 178 DKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-DSENESGTG 254 (393)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-C------CC
T ss_pred CEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee-cccccCCCC
Confidence 999999999999999999999888776 66789999999866669999999999999999776521100 001122356
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCe
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNT 380 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~ 380 (450)
|...|.+++|+|++++|++|+.||.|++||+++.......... ........+.+|...|.++++++ .+|++|+.||.
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP-NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC-CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 8899999999999999999999999999999875432111110 01123345678999999999984 59999999999
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++||+.++ +++..+.+|...|.+++|++... +++++.+|+||+.||+|+||+++
T Consensus 334 v~iwd~~~~--------~~~~~l~~h~~~v~~v~~~~~~~-------~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 334 VLFWDKKSG--------NPLLMLQGHRNSVISVAVANGSS-------LGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEEETTTC--------CEEEEEECCSSCEEEEEECSSCT-------TCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEECCCC--------eEEEEECCCCCCEEEEEecCCcC-------cCCCCCEEEEECCCCcEEECccc
Confidence 999999875 67788999999999999987543 34445599999999999999974
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-44 Score=319.18 Aligned_cols=298 Identities=19% Similarity=0.311 Sum_probs=232.7
Q ss_pred cceeeeEEeecCCCcceEEEEE--------eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--------AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--------d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
..++..+|+ ||.+.|++++| |+++|+||+.||+|++||+...+.... .......+.+|...|.++
T Consensus 10 ~~~~~~~l~--gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~~~~~~~l~~h~~~V~~~ 82 (343)
T 2xzm_R 10 QVVKRGILE--GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKALTGHNHFVSDL 82 (343)
T ss_dssp EEEEEEEEE--CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----SEEEEEEECCCSSCEEEE
T ss_pred Eeeeeeeec--cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----cccccchhccCCCceEEE
Confidence 345677777 99999999998 789999999999999999876432110 011223477999999999
Q ss_pred EEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 134 VVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 134 ~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+|+++. +++++.|++|++||+++++. ...+.+|..
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~-------------------------------------------~~~~~~h~~ 119 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTT-------------------------------------------YKRFVGHQS 119 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCE-------------------------------------------EEEEECCCS
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcE-------------------------------------------EEEEcCCCC
Confidence 999876 89999999999999988721 223447999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe-ecccccceEEEEEeecCC---------cEEEEEcCCCcEEEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSND---------GFVYTGSADTKIKVW 281 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~i~vw 281 (450)
.|.+++|+|++++|++++.|+.|++||+......... ...|...|.+++|+|... .++++++.||.|++|
T Consensus 120 ~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999844332222 125788999999998652 589999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|... + ....+.+|...|.+++|+|+|++|++|+.||.|++||+...... .....+...
T Consensus 200 d~~~-~--------~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-------------~~~~~~~~~ 257 (343)
T 2xzm_R 200 NTNF-Q--------IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-------------QREFDAGST 257 (343)
T ss_dssp ETTT-E--------EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-------------SEEEECSSC
T ss_pred cCCC-c--------eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-------------ceeecCCCc
Confidence 9432 2 34456789999999999999999999999999999999543211 111124456
Q ss_pred eEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe-----------cCCCcceEEEEEEecCCCCCCCCCCC
Q 041325 362 ILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL-----------EGHRRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 362 v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----------~~h~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
|.+++|+++ .+++++.|+.|++||+.++.. ..+..+ .+|...|.+++|+|+++
T Consensus 258 v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--------- 322 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVGTDQGVKIFNLMTQSK------APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK--------- 322 (343)
T ss_dssp EEEEEECSSSCEEEEEESSCEEEEESSSCCS------CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC---------
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEeCCCCC------CceEEeecCcchhhhhhcCCCCceEEEEECCCCC---------
Confidence 999999965 445566788899999986421 111122 36888999999999999
Q ss_pred CceEEEEEcccCCcEEEEEeC
Q 041325 430 STSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.||.|++|+++
T Consensus 323 ----~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 323 ----KLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp ----CEEEEETTSEEEEEEEE
T ss_pred ----eEEEecCCceEEEEEEE
Confidence 89999999999999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=337.63 Aligned_cols=348 Identities=24% Similarity=0.410 Sum_probs=276.1
Q ss_pred CcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE
Q 041325 11 CRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL 88 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l 88 (450)
...++.+.|+|+...+.+...+..+.. + ...++++..+. +|...|++++| |+++|
T Consensus 221 ~~~v~~~~~s~dg~~l~~~~~d~~i~~--------------------w-~~~~~~~~~~~--~~~~~v~~v~~~~d~~~l 277 (577)
T 2ymu_A 221 SSSVRGVAFSPDGQTIASASDDKTVKL--------------------W-NRNGQLLQTLT--GHSSSVNGVAFRPDGQTI 277 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEE--------------------E-CTTSCEEEEEC--CCSSCEEEEEECTTSSEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEE--------------------E-eCCCCEEEEEe--cCCCCEEEEEEcCCCCEE
Confidence 345566777777777766655555543 1 12346777787 99999999999 79999
Q ss_pred EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccC
Q 041325 89 YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 89 ~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~ 166 (450)
++++.|+.|++||... +.... +.+|...|.+++|+|+. +++++.||+|++||............
T Consensus 278 ~~~~~d~~i~~w~~~~-~~~~~------------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~- 343 (577)
T 2ymu_A 278 ASASDDKTVKLWNRNG-QLLQT------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGH- 343 (577)
T ss_dssp EEEETTSCEEEEETTS-CEEEE------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC-
T ss_pred EEEeCCCEEEEEeCCC-cEEEE------------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCC-
Confidence 9999999999999653 33332 67899999999999876 99999999999999876643322111
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeec---ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH---KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
......+... .+....+....++.+.++.. ....+.+|...|.+++|+|++++|++++.|+.|++||. +++
T Consensus 344 ---~~~v~~~~~s--~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~ 417 (577)
T 2ymu_A 344 ---SSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 417 (577)
T ss_dssp ---SSCEEEEEEC--TTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCC
T ss_pred ---CCCEEEEEEC--CCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCC
Confidence 1111222222 23344555556666666543 34456789999999999999999999999999999996 567
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.+..+. .|...|.+++|+|+ +.++++++.|+.|++||... + .+..+.+|...|++++|+|++++|++++
T Consensus 418 ~~~~~~-~~~~~v~~~~~s~d-~~~l~~~~~d~~v~~w~~~~-~--------~~~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 418 LLQTLT-GHSSSVWGVAFSPD-DQTIASASDDKTVKLWNRNG-Q--------LLQTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp EEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTS-C--------EEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEec-CCCCCeEEEEECCC-CCEEEEEcCCCEEEEEECCC-C--------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 777777 89999999999984 45899999999999999633 2 4556678999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEE
Q 041325 324 CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA 401 (450)
Q Consensus 324 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 401 (450)
.|+.|++||. +++.+ ..+.+|...|++++|++ ++|++++.||.|++||... +++.
T Consensus 487 ~d~~i~iw~~-~~~~~-------------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~---------~~~~ 543 (577)
T 2ymu_A 487 DDKTVKLWNR-NGQLL-------------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------QLLQ 543 (577)
T ss_dssp TTSEEEEEET-TSCEE-------------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---------CEEE
T ss_pred CCCEEEEEcC-CCCEE-------------EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC---------CEEE
Confidence 9999999995 44433 56788999999999985 4999999999999999642 6788
Q ss_pred EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 402 VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 402 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.+.+|...|++++|+||++ +|+|++.|++|++||
T Consensus 544 ~~~~h~~~v~~~~fs~dg~-------------~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 544 TLTGHSSSVWGVAFSPDGQ-------------TIASASSDKTVKLWN 577 (577)
T ss_dssp EEECCSSCEEEEEECTTSS-------------CEEEEETTSCEEEEC
T ss_pred EEcCCCCCEEEEEEcCCCC-------------EEEEEeCCCEEEEeC
Confidence 8999999999999999999 899999999999997
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=313.32 Aligned_cols=305 Identities=20% Similarity=0.361 Sum_probs=242.8
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
..+..++..+|+ ||.+.|++|+| + +++||||+.||+|+|||+.+.+.... .....+.+|...|.+++|
T Consensus 24 ~~~~~~l~~tL~--GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-------~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 24 MTEQMTLRGTLK--GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-------IPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp --CEEEEEEEEC--CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-------EEEEEECCCSSCEEEEEE
T ss_pred cCCceEEEEEEC--CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-------eeeEEEeCCCCCEEEEEE
Confidence 344556777888 99999999999 3 68999999999999999887653221 112246799999999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+++. |++++.|+.|++|+...... ......+...+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 131 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTT-------------------------------------------TRRFVGHTKDV 131 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEE-------------------------------------------EEEEECCSSCE
T ss_pred CCCCCEEEEEcccccceEEeecccce-------------------------------------------eeeecCCCCce
Confidence 9877 99999999999999988732 11222466678
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-EEEEEcCCCcEEEEeCcchhhhccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
..+.+++++++|++++.|+.+++||+............|...+..+++++.... ++++++.|+.|++||+++++
T Consensus 132 ~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----- 206 (340)
T 4aow_A 132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----- 206 (340)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----
T ss_pred eEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----
Confidence 889999999999999999999999998776665555578899999999876543 57899999999999997766
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-e
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-L 371 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 371 (450)
....+.+|...|++++|+|++++|++|+.||.|++||+++.+.+ ..+. +...|.++.|+++ .
T Consensus 207 ---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-------------~~~~-~~~~v~~~~~~~~~~ 269 (340)
T 4aow_A 207 ---LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------YTLD-GGDIINALCFSPNRY 269 (340)
T ss_dssp ---EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-------------EEEE-CSSCEEEEEECSSSS
T ss_pred ---eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-------------eeec-CCceEEeeecCCCCc
Confidence 56667789999999999999999999999999999999987755 2232 3467899999865 7
Q ss_pred EEEEeCCCeEEEeeCCCCccccC-CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQ-KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++++.|+.|++||++.+..... ..........+|...|++++|+|+++ +|++|+.||.|+|||++
T Consensus 270 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-------------~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 270 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ-------------TLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS-------------EEEEEETTSCEEEEEEE
T ss_pred eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC-------------EEEEEeCCCEEEEEeCC
Confidence 88888999999999986421110 11122233457899999999999999 99999999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-43 Score=337.66 Aligned_cols=319 Identities=14% Similarity=0.197 Sum_probs=255.9
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
+...+.|+|++..+..... ..+. ......++..+++. +|...|++++| ||++||+
T Consensus 20 ~~~~~~~spdg~~l~~~~~-~~v~--------------------l~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~las 76 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNG-TSVY--------------------TVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCAS 76 (611)
T ss_dssp CCCCCEECTTSSEEEEEET-TEEE--------------------EEETTCSSCCEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred ceeEEeeCCCCCEEEeCCC-CEEE--------------------EecCCCcccCeEec--CCCCceEEEEECCCCcEEEE
Confidence 5556677777777666432 2222 22223345677787 99999999999 8999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC----CeEEEEEcCCCceeEEec
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD----HKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iw~~~~~~~~~~~~ 164 (450)
|+.||+|+|||+.+++.... ..+.+|.+.|.+++|+|+. |++++.+ +.|++||....
T Consensus 77 g~~d~~v~lWd~~~~~~~~~----------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~------- 139 (611)
T 1nr0_A 77 GDVHGNVRIWDTTQTTHILK----------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS------- 139 (611)
T ss_dssp EETTSEEEEEESSSTTCCEE----------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-------
T ss_pred EeCCCCEEEeECCCCcceee----------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC-------
Confidence 99999999999875543211 1367899999999999887 7777765 46788874321
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCe
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 243 (450)
...+.+|.+.|.+++|+|++. .|++|+.|++|++||..+++
T Consensus 140 --------------------------------------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 140 --------------------------------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp --------------------------------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred --------------------------------------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence 112347999999999999986 69999999999999999999
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH-------hhcccceEEEEEcCCC
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL-------EKHKSAVTALALSTDG 316 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~i~~l~~~~~~ 316 (450)
+...+. +|...|.+++|+|+ ..+|++++.|+.|++||+.+++ ....+ .+|...|.+++|+|++
T Consensus 182 ~~~~l~-~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~--------~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 182 FKSTFG-EHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGT--------KTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp EEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC--------EEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred Eeeeec-cccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCc--------EeeeeccccccccccCCCEEEEEECCCC
Confidence 888887 89999999999995 4489999999999999987765 22222 2689999999999999
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCC
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 396 (450)
++|++++.|++|++||+.+++.+..+. .-..+...+.++.|.++.+++++.||.+++||...+
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~------- 314 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIP----------VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG------- 314 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE----------CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT-------
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeec----------CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC-------
Confidence 999999999999999999887653211 112344566788888999999999999999998864
Q ss_pred ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 397 YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 397 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.+...+.+|...|++++|+|+++ +|++++.|++|++||++
T Consensus 315 -~~~~~~~gh~~~v~~l~~spdg~-------------~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 315 -SIDQVRYGHNKAITALSSSADGK-------------TLFSADAEGHINSWDIS 354 (611)
T ss_dssp -EEEEEECCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETT
T ss_pred -CcceEEcCCCCCEEEEEEeCCCC-------------EEEEEeCCCcEEEEECC
Confidence 56778889999999999999999 99999999999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-42 Score=305.45 Aligned_cols=244 Identities=17% Similarity=0.216 Sum_probs=205.9
Q ss_pred CCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeE
Q 041325 73 GNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKI 149 (450)
Q Consensus 73 ~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 149 (450)
.|...|.+++| ..+.|++|+.||+|+|||+.+++...... ....+|.+.|++++|++++ |++|+.||+|
T Consensus 80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~--------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i 151 (344)
T 4gqb_B 80 QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSK--------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151 (344)
T ss_dssp EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEE--------EEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEee--------ccccCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 57788999999 46789999999999999999887554421 2356899999999999876 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEE
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYST 228 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 228 (450)
++||+++++ .+ ..+.+|.+.|.+++|++++ .+|+++
T Consensus 152 ~iwd~~~~~----------------~~---------------------------~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 152 KVWDLAQQV----------------VL---------------------------SSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp EEEETTTTE----------------EE---------------------------EEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred EEEECCCCc----------------EE---------------------------EEEcCcCCceEEEEecCCCCCceeee
Confidence 999999872 22 2344799999999999987 478999
Q ss_pred eCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 229 SWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
+.|++|++||+++++....+.. .+...+.+++|+|.+..++++|+.||.|++||+++++ .+..+.+|...|
T Consensus 189 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--------~~~~~~~h~~~v 260 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--------CVLSSAVHSQCV 260 (344)
T ss_dssp ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------CCEEEECCSSCE
T ss_pred ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--------EEEEEcCCCCCE
Confidence 9999999999999988877752 3556789999999777789999999999999998776 677788999999
Q ss_pred EEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEE
Q 041325 308 TALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRI 383 (450)
Q Consensus 308 ~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~i 383 (450)
++++|+|++ ++|++|+.|+.|++||+.+++.+ .+.+|...|++++|+++ +|++|+.||+|++
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~--------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF--------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCCEEE--------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE--------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 999999998 58999999999999999987643 45789999999999843 6789999999999
Q ss_pred eeCCCC
Q 041325 384 WRRSSS 389 (450)
Q Consensus 384 wd~~~~ 389 (450)
|++.+.
T Consensus 327 w~v~~~ 332 (344)
T 4gqb_B 327 HVVPTE 332 (344)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 999863
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=315.63 Aligned_cols=256 Identities=23% Similarity=0.434 Sum_probs=224.4
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
.....+...++++.++++ +|...|++++| ++++|++|+.||+|++||+.+++.... +.+|...|
T Consensus 130 g~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~------------~~~h~~~V 195 (410)
T 1vyh_C 130 ATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT------------MHGHDHNV 195 (410)
T ss_dssp SCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC------------CCCCSSCE
T ss_pred CeEEEEECCCCcEEEEEe--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE------------EcCCCCCE
Confidence 445566667778888998 99999999999 799999999999999999988876655 66899999
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
.+++|+|+. |++|+.|++|++||++++.. ...+.+
T Consensus 196 ~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-------------------------------------------~~~~~~ 232 (410)
T 1vyh_C 196 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-------------------------------------------VKTFTG 232 (410)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTCCE-------------------------------------------EEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-------------------------------------------EEEEeC
Confidence 999999776 99999999999999998722 223446
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC-------------------CcEE
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN-------------------DGFV 269 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l 269 (450)
|...|.++.+++++.++++|+.|+.|++||+.++++...+. .|...|.+++|+|.. ..++
T Consensus 233 h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (410)
T 1vyh_C 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence 88999999999999999999999999999999999988887 899999999999852 3479
Q ss_pred EEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCce
Q 041325 270 YTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349 (450)
Q Consensus 270 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 349 (450)
++|+.|+.|++||++++. .+..+.+|...|++++|+|++++|++|+.||.|++||+.+++++
T Consensus 312 ~sgs~D~~i~iwd~~~~~--------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---------- 373 (410)
T 1vyh_C 312 LSGSRDKTIKMWDVSTGM--------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---------- 373 (410)
T ss_dssp EEEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC----------
T ss_pred EEEeCCCeEEEEECCCCc--------eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE----------
Confidence 999999999999998766 56677789999999999999999999999999999999887654
Q ss_pred eeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 350 VLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
..+.+|...|++++|+++ +|++|+.||.|++|+++
T Consensus 374 ---~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 374 ---KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ---EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ---EEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 567789999999999855 99999999999999863
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=311.96 Aligned_cols=320 Identities=13% Similarity=0.120 Sum_probs=240.7
Q ss_pred eeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----
Q 041325 64 QCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD----- 138 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----- 138 (450)
...+.++ +|.+.|++++|+.++|++|+.||.|++||+.+++.... ......+.+|...|.+++|+++
T Consensus 7 ~~~~~~~--~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 7 ATANAGK--AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKSGLHHVDVLQAIERDA 78 (397)
T ss_dssp EEEEESS--CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTTCEEEEEEEEEEETTT
T ss_pred hhhhhhh--hhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC------CCcceEEecCCCcEEEEEEecccccCC
Confidence 3455555 99999999999889999999999999999988761100 1112236789999999999965
Q ss_pred ---e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC-----
Q 041325 139 ---K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH----- 209 (450)
Q Consensus 139 ---~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 209 (450)
. |++++.||.|++||+.++.... ......+..|
T Consensus 79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~ 120 (397)
T 1sq9_A 79 FELCLVATTSFSGDLLFYRITREDETK--------------------------------------KVIFEKLDLLDSDMK 120 (397)
T ss_dssp EEEEEEEEEETTSCEEEEEEEECTTTC--------------------------------------CEEEEEECCSCTTGG
T ss_pred ccccEEEEEcCCCCEEEEEccCCcccc--------------------------------------cccceeecccccccC
Confidence 4 9999999999999998763100 0001223345
Q ss_pred CCceEEEEEc----cCCCE-EEEEeCCCcEEEEecCC------CeEEE-----Eee------cccccceEEEEEeecCCc
Q 041325 210 VDTVSALALS----SDGSL-LYSTSWDRTFKIWRTSD------FRCLE-----SVK------NAHDDAINAIVVSKSNDG 267 (450)
Q Consensus 210 ~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~~------~~~~~~v~~~~~~~~~~~ 267 (450)
...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+. ..|...|.+++|+|++
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 198 (397)
T 1sq9_A 121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-- 198 (397)
T ss_dssp GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--
T ss_pred CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--
Confidence 5899999999 99999 99999999999999988 66555 553 2578899999999854
Q ss_pred EEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh---c---ccceEEEEEcCCCCEEEEeeCC---CcEEEEEcCCCce
Q 041325 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK---H---KSAVTALALSTDGTVLYSGACD---RSILVWERDQGNY 338 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~l~~~~~~~~l~~g~~d---g~i~vwd~~~~~~ 338 (450)
++++++.||.|++||+++++ .+..+.. | ...|.+++|+|++++|++++.| |.|++||+++++.
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLR--------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EEEEECTTSEEEEEETTTTE--------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred eEEEEeCCCcEEEEECCCCc--------eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 99999999999999997765 5556666 7 8999999999999999999999 9999999998876
Q ss_pred eeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEec------CC----
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE------GH---- 406 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------~h---- 406 (450)
+..+...............|...|.+++|+ +++|++++.||.|++||+.++ +++..+. +|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--------ERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCGGGCSSGGGC
T ss_pred cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--------ceeEEEecccCcccchhhh
Confidence 532211000000000011189999999998 459999999999999999874 6777777 77
Q ss_pred -----------CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 407 -----------RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 407 -----------~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
...|++++|+|++.... ..+.++.+|++++.||.|++|+++
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSG---MGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBS---TTCTTSCEEEEEETTTEEEEEEEE
T ss_pred hccccccccccCCceeEEEecccccccc---ccccccceEEEecCCCcEEEEEcC
Confidence 99999999999982000 000001189999999999999974
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=329.41 Aligned_cols=292 Identities=24% Similarity=0.396 Sum_probs=233.9
Q ss_pred eeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
+....++ +|.+.|+++++ ++++|+||+.||+|++|++.+..... ......+.+|...|.+++|+++.
T Consensus 373 ~~~~~l~--~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 373 VLKGTMR--AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------GVAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEEEEEE--CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------CEEEEEEECCSSCEEEEEECTTSS
T ss_pred chhhhcc--cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------ccccceecCCCCcEEEEEECCCCC
Confidence 3445677 99999999999 36899999999999999987653211 01122477999999999999876
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.||+|++||+.++.. ...+.+|.+.|.+++|
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~-------------------------------------------~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVS-------------------------------------------TRRFVGHTKDVLSVAF 480 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEE-------------------------------------------EEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCcc-------------------------------------------eeEEeCCCCCEEEEEE
Confidence 99999999999999988721 2234579999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEee--cccccceEEEEEeecCC-cEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDDAINAIVVSKSND-GFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
+|++++|++|+.|++|++||........... ..|...|.+++|+|+.. ..+++++.|+.|++||+++.+
T Consensus 481 s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-------- 552 (694)
T 3dm0_A 481 SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-------- 552 (694)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--------
T ss_pred eCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--------
Confidence 9999999999999999999987554333222 25788899999998653 479999999999999997665
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFS 374 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s 374 (450)
....+.+|...|++++|+|++++|++|+.||.|++||+++++.+. .+. +...|.+++|+++ .+++
T Consensus 553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~-------------~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-------------SLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE-------------CCB-CSSCEEEEEECSSSSEEE
T ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-------------Eec-CCCcEEEEEEcCCCcEEE
Confidence 556677899999999999999999999999999999999887652 222 3467899999965 5555
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecC-------------------CCcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-------------------HRRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------------------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
++.|+.|++||++++ ..+..+.. +...+++++|+|+++ +|
T Consensus 619 ~~~~~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-------------~l 677 (694)
T 3dm0_A 619 AATEHGIKIWDLESK--------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-------------TL 677 (694)
T ss_dssp EEETTEEEEEETTTT--------EEEEEECCCCC----------------CCCCEEEEEECTTSS-------------EE
T ss_pred EEcCCCEEEEECCCC--------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC-------------EE
Confidence 566778999999875 33333322 122478999999999 99
Q ss_pred EEcccCCcEEEEEeC
Q 041325 436 YSGSLDCEIKIWQIR 450 (450)
Q Consensus 436 ~s~~~Dg~i~iw~l~ 450 (450)
++|+.||.|+||++.
T Consensus 678 ~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999999974
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=300.92 Aligned_cols=292 Identities=14% Similarity=0.249 Sum_probs=244.7
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL 136 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 136 (450)
....+...+.+.+.+|...|++++| ++++|++|+.||.|++||+.+++.... +.+|...|.+++|+
T Consensus 16 ~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp CCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE------------ECCCSSCEEEEEEC
T ss_pred eEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh------------hhhcCCcEEEEEEc
Confidence 3444566666666699999999999 799999999999999999998886665 67899999999999
Q ss_pred CCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 137 GDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 137 ~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
++. |++++.||.|++||+.+++. +..+ .+...+.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~----------------~~~~----------------------------~~~~~v~ 119 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQC----------------VATW----------------------------KSPVPVK 119 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCE----------------EEEE----------------------------ECSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE----------------EEEe----------------------------ecCCCeE
Confidence 766 99999999999999998732 1111 2667899
Q ss_pred EEEEccCCCEEEEEeCC-----CcEEEEecCCCeE-----------EEEeeccccc--ceEEEEEeecCCcEEEEEcCCC
Q 041325 215 ALALSSDGSLLYSTSWD-----RTFKIWRTSDFRC-----------LESVKNAHDD--AINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg 276 (450)
+++|+|+++++++++.+ +.|++||+..... ...+. .+.. .+.+++|+|++. ++++++.||
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~dg 197 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDAATVAGWSTKGK-YIIAGHKDG 197 (369)
T ss_dssp EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCCEEEEEECGGGC-EEEEEETTS
T ss_pred EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccceeEEEEcCCCC-EEEEEcCCC
Confidence 99999999999999998 9999999876532 22222 3444 899999998544 899999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.|++||+++.. .....+..|...|.+++|+|++++|++++.||.|++||+++++.+ ..+.
T Consensus 198 ~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-------------~~~~ 257 (369)
T 3zwl_B 198 KISKYDVSNNY-------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL-------------KKYE 257 (369)
T ss_dssp EEEEEETTTTT-------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------EEEE
T ss_pred EEEEEECCCCc-------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee-------------eeec
Confidence 99999997622 155666778999999999999999999999999999999988755 2222
Q ss_pred CCccceEEEEEeC--CeEEEEeCCC--------------eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 357 GHTKAILCLAVVS--NLLFSGSSDN--------------TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~~dg--------------~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
+...+.+++|++ +++++++.++ .+++||..++ +.+..+.+|...|++++|+|+++
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--------EEIGRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC--------CEEEEEECCSSCEEEEEECTTSS
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--------cchhheecccCcEEEEEECCCCC
Confidence 677889999984 4899999888 8999999874 67888899999999999999999
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.||.|++|+++
T Consensus 329 -------------~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 329 -------------SYASGGEDGFIRLHHFE 345 (369)
T ss_dssp -------------EEEEEETTSEEEEEEEC
T ss_pred -------------EEEEEcCCCeEEEEECc
Confidence 99999999999999984
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=295.57 Aligned_cols=320 Identities=16% Similarity=0.272 Sum_probs=254.7
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
++..+.|+|++..+........+.. .......+.+ ... +|...|++++| ++++|++
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~-------------------~~~~~~~~~~-~~~--~h~~~v~~~~~~~~~~~l~~ 68 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIG-------------------PGIPRHARQI-NTL--NHGEVVCAVTISNPTRHVYT 68 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSS-------------------TTCCSEEEEE-EEE--CCSSCCCEEEECSSSSEEEE
T ss_pred ceeEEEECCCCCEEEeecCCCcEec-------------------cccCCccccc-eec--cCCCceEEEEEecCCcEEEE
Confidence 5667888898888876543332211 0111112222 223 89999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
++ ||.|++||+.++...... ......+|...|.+++|+++. |++++.||.|++||+++++.
T Consensus 69 ~~-dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--------- 131 (337)
T 1gxr_A 69 GG-KGCVKVWDISHPGNKSPV-------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--------- 131 (337)
T ss_dssp EC-BSEEEEEETTSTTCCSCS-------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------
T ss_pred cC-CCeEEEEECCCCCceeee-------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------
Confidence 99 999999999876532221 111123788999999999876 99999999999999987631
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
.....+..|...|.+++|+|+++++++++.||.|++||+++++.+..+
T Consensus 132 --------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 132 --------------------------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp --------------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred --------------------------------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence 012233468889999999999999999999999999999999998888
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcE
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSI 328 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i 328 (450)
. .|...+.+++|+|+ ..++++++.||.|++||+++++ ....+ .+...+.+++|+|++++|++++.|+.|
T Consensus 180 ~-~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i 248 (337)
T 1gxr_A 180 Q-GHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGR--------QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNV 248 (337)
T ss_dssp C-CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE--------EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred e-cccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCc--------eEeee-cCCCceEEEEECCCCCEEEEEcCCCcE
Confidence 7 78999999999984 4589999999999999997765 23332 367889999999999999999999999
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 406 (450)
++||+++++. ..+..|...|.+++|++ ++|++++.||.|++||+.++ +.+. ...|
T Consensus 249 ~~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~--------~~~~-~~~~ 305 (337)
T 1gxr_A 249 EVLHVNKPDK--------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--------ASIF-QSKE 305 (337)
T ss_dssp EEEETTSSCE--------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEE-EEEC
T ss_pred EEEECCCCCe--------------EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC--------eEEE-EecC
Confidence 9999997653 24567889999999984 59999999999999999874 3333 3458
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
...|.+++|+|+++ +|++++.||.|++|++.
T Consensus 306 ~~~v~~~~~s~~~~-------------~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 306 SSSVLSCDISVDDK-------------YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SSCEEEEEECTTSC-------------EEEEEETTSCEEEEEEE
T ss_pred CCcEEEEEECCCCC-------------EEEEecCCCeEEEEEEe
Confidence 89999999999999 99999999999999973
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=304.48 Aligned_cols=301 Identities=17% Similarity=0.161 Sum_probs=235.4
Q ss_pred ccceeeeEEeecCCCcceEEEEE--eC-CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI--AG-KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~--d~-~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
...++.+++. +|...|++++| ++ ++|++|+.||.|+|||+.+++...... ..+|...|.+++|++
T Consensus 61 ~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 61 KSYKLHRTAS--PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ----------GMGPGDAITGMKFNQ 128 (383)
T ss_dssp TTCEEEEEEC--CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC----------CCSTTCBEEEEEEET
T ss_pred cccceEEecc--CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee----------cCCcCCceeEEEeCC
Confidence 3456777887 99999999999 56 899999999999999999877655411 237999999999998
Q ss_pred -Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 138 -DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 138 -~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+. |++++.|+.|++||++..... .+. ....|...|.
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~~~~~-----------------~~~------------------------~~~~~~~~v~ 167 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSGSVIQ-----------------VFA------------------------KTDSWDYWYC 167 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTSCEEE-----------------EEE------------------------CCCCSSCCEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceE-----------------EEe------------------------ccCCCCCCeE
Confidence 33 999999999999999864211 000 0113567899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+++|+|++++|++++.|+.|++||+ +++.+..+. .|...|.+++|+|++..++++++.|+.|++||+++.+ ...
T Consensus 168 ~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~ 241 (383)
T 3ei3_B 168 CVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK----DKN 241 (383)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCC----STT
T ss_pred EEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCC----ccc
Confidence 9999999999999999999999999 577778877 7999999999999666589999999999999998743 111
Q ss_pred hhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc----------cceE
Q 041325 295 SLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT----------KAIL 363 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~ 363 (450)
..+..+ .|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.... .....|. ..+.
T Consensus 242 ~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 242 SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP------HRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC------BCCCTTSCCCCCEECSSSSEE
T ss_pred ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc------ccccccccceEEeccCCCCce
Confidence 233333 5889999999999 99999999999999999999876542211100 0111122 3344
Q ss_pred EEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC--CCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 364 CLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG--HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 364 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
.++++++ .+ +++.||.|++||+.++ +++..+.+ |...+..++|+|++. +|++|+
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~--------~~~~~l~~~~~~~~~~~~~~s~~g~-------------~l~s~s- 371 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSG--------GLVHQLRDPNAAGIISLNKFSPTGD-------------VLASGM- 371 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTC--------CEEEEECBTTBCSCCCEEEECTTSS-------------EEEEEE-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCC--------ceeeeecCCCCCceEEEEEEecCcc-------------EEEEec-
Confidence 5555533 33 7889999999999875 56777776 567788889999999 899997
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
||.|++||++
T Consensus 372 d~~i~iw~~~ 381 (383)
T 3ei3_B 372 GFNILIWNRE 381 (383)
T ss_dssp TTEEEEEECC
T ss_pred CCcEEEEecC
Confidence 9999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=293.23 Aligned_cols=285 Identities=23% Similarity=0.385 Sum_probs=243.3
Q ss_pred ccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
...++.+++. +|.+.|++++| ++++|++|+.||.|++||+.+++.... +..|...|.+++|+++.
T Consensus 6 ~~~~~~~~l~--~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~------------~~~~~~~v~~~~~~~~~ 71 (313)
T 3odt_A 6 TGYQLSATLK--GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTV------------VYTGQGFLNSVCYDSEK 71 (313)
T ss_dssp CCCEEEEEEC--CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEE------------EEECSSCEEEEEEETTT
T ss_pred ccHHHHHHhh--CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEE------------eecCCccEEEEEECCCC
Confidence 3457888888 99999999999 899999999999999999987765554 66889999999999876
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
+++++.||.|++|++...... .....+.+|...|.+++
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~ 111 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGE----------------------------------------DPLYTLIGHQGNVCSLS 111 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTS----------------------------------------CC-CEECCCSSCEEEEE
T ss_pred CEEEEecCCCeEEEEEeeecCCC----------------------------------------CcccchhhcccCEEEEE
Confidence 999999999999999765210 11223446889999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
| +++++++++.||.|++|| .++....+. .|...+.++.+.|.....+++++.||.|++||... ..
T Consensus 112 ~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~ 176 (313)
T 3odt_A 112 F--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----------VI 176 (313)
T ss_dssp E--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----------EE
T ss_pred e--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----------eE
Confidence 9 578999999999999999 667777777 78999999999986677999999999999999433 22
Q ss_pred hhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEE
Q 041325 298 QTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSG 375 (450)
Q Consensus 298 ~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~ 375 (450)
..+.. |...+.+++|+|++. +++++.||.|++||+++++.+ ..+..|...|++++|+++ .|+++
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~l~~~ 242 (313)
T 3odt_A 177 KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL-------------RTYEGHESFVYCIKLLPNGDIVSC 242 (313)
T ss_dssp EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE-------------EEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh-------------hhhhcCCceEEEEEEecCCCEEEE
Confidence 33344 788999999999988 999999999999999988755 566789999999999966 89999
Q ss_pred eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 376 SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.||.|++||+.++ +++..+..|...|.+++|+|++. +++++.||.|++||++
T Consensus 243 ~~dg~v~iwd~~~~--------~~~~~~~~~~~~i~~~~~~~~~~--------------~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 243 GEDRTVRIWSKENG--------SLKQVITLPAISIWSVDCMSNGD--------------IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ETTSEEEEECTTTC--------CEEEEEECSSSCEEEEEECTTSC--------------EEEEETTSCEEEEESC
T ss_pred ecCCEEEEEECCCC--------ceeEEEeccCceEEEEEEccCCC--------------EEEEeCCCcEEEEeCC
Confidence 99999999999875 67888889999999999999987 5568999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=294.99 Aligned_cols=244 Identities=23% Similarity=0.361 Sum_probs=212.2
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|.+++|+|+. |++++.||+|++||++++..
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------------------------- 47 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------------------------- 47 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----------------------------------------
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce----------------------------------------
Confidence 478999999999999887 99999999999999998721
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
...+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+. .|...|.+++|+|++ .++++|+.||.|+
T Consensus 48 ---~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 48 ---VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTK-PYVLSGSDDLTVK 122 (304)
T ss_dssp ---EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSS-SEEEEEETTSCEE
T ss_pred ---eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCC-CEEEEECCCCeEE
Confidence 22334688899999999999999999999999999999999999988 899999999999954 4899999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
+||++++. .....+.+|...|.+++|+| ++.+|++|+.|+.|++||+++++... ....+|
T Consensus 123 lWd~~~~~-------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~------------~~~~~~ 183 (304)
T 2ynn_A 123 LWNWENNW-------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF------------TLTTGQ 183 (304)
T ss_dssp EEEGGGTT-------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE------------EEECCC
T ss_pred EEECCCCc-------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc------------eeccCC
Confidence 99987653 13455678999999999999 67899999999999999998765331 223456
Q ss_pred ccceEEEEEeC----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 359 TKAILCLAVVS----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 359 ~~~v~~~~~~~----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
...+..+.+.+ .+|++|+.|+.|++||++++ +++..+.+|...|.+++|+|++. +
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~-------------~ 242 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------SCVATLEGHMSNVSFAVFHPTLP-------------I 242 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECSSSS-------------E
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC--------ccceeeCCCCCCEEEEEECCCCC-------------E
Confidence 67888888863 49999999999999999874 78899999999999999999999 9
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
|++|+.||+|++||++
T Consensus 243 l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEETTSCEEEEETT
T ss_pred EEEEcCCCeEEEEECC
Confidence 9999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=316.83 Aligned_cols=319 Identities=25% Similarity=0.427 Sum_probs=257.8
Q ss_pred cceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
+++.++.+. +|...|.+++| |+++|++++.||.|++||... +.... +.+|...|.+++|+++.
T Consensus 210 ~~~~~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~------------~~~~~~~v~~v~~~~d~ 274 (577)
T 2ymu_A 210 NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT------------LTGHSSSVNGVAFRPDG 274 (577)
T ss_dssp TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEE------------ECCCSSCEEEEEECTTS
T ss_pred CCcEEEEEe--cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEE------------EecCCCCEEEEEEcCCC
Confidence 456778888 99999999999 799999999999999999653 33332 67899999999999876
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc---eeeeecCCCceE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK---KCTWVHHVDTVS 214 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~ 214 (450)
+++++.|+.|++|+......... ... ......+... .+....+....++.+.++... ...+.+|...+.
T Consensus 275 ~~l~~~~~d~~i~~w~~~~~~~~~~-~~h---~~~v~~~~~~--~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~ 348 (577)
T 2ymu_A 275 QTIASASDDKTVKLWNRNGQLLQTL-TGH---SSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348 (577)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEE-CCC---SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE
T ss_pred CEEEEEeCCCEEEEEeCCCcEEEEE-ecC---CCCeEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE
Confidence 99999999999999765432211 111 1111222222 233445555566677776532 345678999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+++|+|+++++++++.|+.|++||. +++.+..+. .|...|.+++|+|++ .+|++++.|+.|++||... +
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~------- 417 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-Q------- 417 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-C-------
T ss_pred EEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-C-------
Confidence 9999999999999999999999996 567777777 799999999999854 4899999999999999532 2
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 372 (450)
.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++. ...+.+|...|++++|+++ +|
T Consensus 418 -~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~-------------~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 418 -LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQL-------------LQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp -EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCE-------------EEEEECCSSCEEEEEECTTSCEE
T ss_pred -EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCE-------------EEEEcCCCCCEEEEEEcCCCCEE
Confidence 455667899999999999999999999999999999965 332 2567789999999999854 99
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++++.|+.|++||... +++..+.+|...|++++|+|+++ +|++++.||.|++||+
T Consensus 483 as~~~d~~i~iw~~~~---------~~~~~~~~h~~~v~~l~~s~dg~-------------~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 483 ASASDDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQ-------------TIASASDDKTVKLWNR 537 (577)
T ss_dssp EEEETTSEEEEEETTS---------CEEEEEECCSSCEEEEEECTTSS-------------CEEEEETTSEEEEECT
T ss_pred EEEeCCCEEEEEcCCC---------CEEEEEeCCCCCEEEEEEcCCCC-------------EEEEEECcCEEEEEeC
Confidence 9999999999999652 67888999999999999999999 8999999999999985
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-40 Score=298.26 Aligned_cols=300 Identities=14% Similarity=0.232 Sum_probs=241.9
Q ss_pred CCCcceEEEEEe------CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC------eE
Q 041325 73 GNSSYIPSLAIA------GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD------KL 140 (450)
Q Consensus 73 ~h~~~v~~~~~d------~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~l 140 (450)
+|...|++++|+ ...+++++.++.|++||+.+++........ ....|...|.+++|+++ .|
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY-------VDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-------ECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-------cccCCCCcEEEEEeccCCCCCCCEE
Confidence 899999999995 456777777789999999977655442211 11237789999999977 39
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
++|+.||.|++||+.+++. ...+.+|...|.+++|+|
T Consensus 89 ~~~~~dg~i~v~d~~~~~~-------------------------------------------~~~~~~~~~~i~~~~~~~ 125 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQC-------------------------------------------IKHYVGHGNAINELKFHP 125 (366)
T ss_dssp EEEETTCEEEEECTTTCCE-------------------------------------------EEEEESCCSCEEEEEECS
T ss_pred EEecCCCEEEEEEchhceE-------------------------------------------eeeecCCCCcEEEEEECC
Confidence 9999999999999987732 223346899999999999
Q ss_pred -CCCEEEEEeCCCcEEEEecCCCeEEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 221 -DGSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 221 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
++++|++++.||.|++||+++++.+..+. ..|...|.+++|+|+ ..++++++.||.|++||+++++ ..
T Consensus 126 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------~~ 196 (366)
T 3k26_A 126 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKR--------MM 196 (366)
T ss_dssp SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHH--------HH
T ss_pred CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCc--------cc
Confidence 99999999999999999999999888873 278999999999984 4589999999999999998766 44
Q ss_pred hhHhh----------------------------cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee-CCCCCCc
Q 041325 298 QTLEK----------------------------HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD-GDDDSGH 348 (450)
Q Consensus 298 ~~~~~----------------------------~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~ 348 (450)
..+.. |...|.+++|+ +++|++++.||.|++||+.+++.... .......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 44443 88999999998 77999999999999999988764221 1222223
Q ss_pred eeeeccccCCccceEEEEEe----CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC--CcceEEEEEEecCCCC
Q 041325 349 MVLKGALRGHTKAILCLAVV----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH--RRPVKCLTAVVDSDYS 422 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~ 422 (450)
......+..|...|.+++|+ +++|++|+.||.|++||+.++. ........+.+| ...|++++|+|+++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~-- 348 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED----PHKAKCTTLTHHKCGAAIRQTSFSRDSS-- 348 (366)
T ss_dssp EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS----GGGCEEEEECCTTCCSCEEEEEECTTSS--
T ss_pred hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC----CccccceEEcccccCCceEEEEeCCCCC--
Confidence 34456777888899888887 5699999999999999998752 112355567777 79999999999999
Q ss_pred CCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.||.|++||+.
T Consensus 349 -----------~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 349 -----------ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp -----------EEEEEETTSEEEEEEC-
T ss_pred -----------eEEEEeCCCEEEEEEec
Confidence 99999999999999984
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-40 Score=306.16 Aligned_cols=281 Identities=21% Similarity=0.372 Sum_probs=238.8
Q ss_pred eeeEEeecCCCcc-eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEE
Q 041325 65 CSATLKVKGNSSY-IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFS 142 (450)
Q Consensus 65 ~~~~l~~~~h~~~-v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s 142 (450)
...++. +|... ++++.+++++|++|+.||.|++||+.+++.... +.+|.+.|.+++|+++. +++
T Consensus 113 ~~~~l~--~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~------------~~~h~~~V~~l~~~~~~~l~s 178 (464)
T 3v7d_B 113 QRTTLR--GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ------------LSGHDGGVWALKYAHGGILVS 178 (464)
T ss_dssp EEEEEE--CCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEECSTTEEEE
T ss_pred ceEEEc--CCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE------------EeCCCcCEEEEEEcCCCEEEE
Confidence 455677 99887 588889999999999999999999999886665 67999999999999775 999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc--c
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS--S 220 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 220 (450)
|+.||+|++||+++++ .+ ..+.+|.+.|.+++|+ +
T Consensus 179 ~s~dg~i~vwd~~~~~----------------~~---------------------------~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGC----------------CT---------------------------HVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp EETTSCEEEEETTTTE----------------EE---------------------------EEECCCSSCEEEEEEEESS
T ss_pred EeCCCCEEEEECCCCc----------------EE---------------------------EEECCCCCccEEEEEecCC
Confidence 9999999999999872 22 2334689999999998 4
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeE-----------------------EEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRC-----------------------LESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
+++++++|+.||.|++||+.++.. +..+. .|...+.++... +.++++++.||.
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~~~~~d~~ 291 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR-GHMASVRTVSGH---GNIVVSGSYDNT 291 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC-CCSSCEEEEEEE---TTEEEEEETTSC
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc-CccceEEEEcCC---CCEEEEEeCCCe
Confidence 788999999999999999987653 22333 677888887543 458999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
|++||+++++ .+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+ ..+.+
T Consensus 292 i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-------------~~~~~ 350 (464)
T 3v7d_B 292 LIVWDVAQMK--------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM-------------YTLQG 350 (464)
T ss_dssp EEEEETTTTE--------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-------------EEECC
T ss_pred EEEEECCCCc--------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-------------EEEeC
Confidence 9999997766 56677789999999999999999999999999999999988755 56788
Q ss_pred CccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 358 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
|...|.++.+++++|++++.||.|++||+.++ ...... .|...+..++|++++. ++++
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~--------~~~~~~-~~~~~~~~~~~~~~~~-------------~l~~ 408 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGSIRGWDANDY--------SRKFSY-HHTNLSAITTFYVSDN-------------ILVS 408 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSEEEEEETTTC--------CEEEEE-ECTTCCCEEEEEECSS-------------EEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC--------ceeeee-cCCCCccEEEEEeCCC-------------EEEE
Confidence 99999999999999999999999999999874 233333 3677788899999999 8999
Q ss_pred cccCCcEEEEEeC
Q 041325 438 GSLDCEIKIWQIR 450 (450)
Q Consensus 438 ~~~Dg~i~iw~l~ 450 (450)
|+ ||.|++||++
T Consensus 409 ~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 409 GS-ENQFNIYNLR 420 (464)
T ss_dssp EE-TTEEEEEETT
T ss_pred ec-CCeEEEEECC
Confidence 88 9999999974
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=306.32 Aligned_cols=289 Identities=22% Similarity=0.439 Sum_probs=214.5
Q ss_pred CCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
+...++++++++. +|...|.+++|++++|++|+.||.|++||+.+++.... +.+|...|.+++|++
T Consensus 144 wd~~~~~~~~~~~--~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~~~~~~ 209 (445)
T 2ovr_B 144 WSAVTGKCLRTLV--GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT------------LYGHTSTVRCMHLHE 209 (445)
T ss_dssp EETTTCCEEEECC--CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEEET
T ss_pred EECCCCcEEEEEc--CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEE------------ECCCCCcEEEEEecC
Confidence 3333444444444 55555555555555555555555555555544443332 334555555555554
Q ss_pred CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 138 DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 138 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
+.+++|+.||+|++||+.+++ ....+.+|...|.+++
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~-------------------------------------------~~~~~~~~~~~v~~~~ 246 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQ-------------------------------------------CLHVLMGHVAAVRCVQ 246 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCC-------------------------------------------EEEEEECCSSCEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCc-------------------------------------------EEEEEcCCcccEEEEE
Confidence 445555555555555554431 2234557899999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
+ +++++++|+.||.|++||+++++.+..+. .|...|.++.+ ++..+++++.||.|++||+++++ .+
T Consensus 247 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~--------~~ 312 (445)
T 2ovr_B 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGN--------CI 312 (445)
T ss_dssp E--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCC--------EE
T ss_pred E--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCC--------EE
Confidence 9 68899999999999999999999999887 88999999999 35589999999999999998766 56
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeC
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS 377 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 377 (450)
..+.+|...+.++.+ ++++|++|+.||.|++||+++++.+.. ......|...|++++|++++|++|+.
T Consensus 313 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~l~s~~~ 380 (445)
T 2ovr_B 313 HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT----------LQGPNKHQSAVTCLQFNKNFVITSSD 380 (445)
T ss_dssp EEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE----------ECSTTSCSSCEEEEEECSSEEEEEET
T ss_pred EEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE----------EccCCCCCCCEEEEEECCCEEEEEeC
Confidence 667788888988887 467999999999999999998876521 11223488999999999999999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEe-----cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc----EEEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVL-----EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE----IKIWQ 448 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~----i~iw~ 448 (450)
||.|++||+.++ +.+..+ .+|.+.|.+++|+|++. ++++|+.||+ |.+||
T Consensus 381 dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 381 DGTVKLWDLKTG--------EFIRNLVTLESGGSGGVVWRIRASNTKL-------------VCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp TSEEEEEETTTC--------CEEEEEEECTTGGGTCEEEEEEECSSEE-------------EEEEECSSSSSCCEEEEEE
T ss_pred CCeEEEEECCCC--------ceeeeeeccccCCCCceEEEEEecCCEE-------------EEEEcccCCCCccEEEEEE
Confidence 999999999975 455555 57889999999999998 9999999998 99999
Q ss_pred eC
Q 041325 449 IR 450 (450)
Q Consensus 449 l~ 450 (450)
++
T Consensus 440 f~ 441 (445)
T 2ovr_B 440 FD 441 (445)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=314.41 Aligned_cols=351 Identities=16% Similarity=0.180 Sum_probs=260.2
Q ss_pred cccCCCccCCCCC-ccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccce---eeeEEeecCCCcceEEEEE--eC
Q 041325 12 RRNKEPKFQPSSN-HLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQ---CSATLKVKGNSSYIPSLAI--AG 85 (450)
Q Consensus 12 ~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~h~~~v~~~~~--d~ 85 (450)
.++..+.|+|+.. .+.+......+. ..........++...... ++..+ .|...|++++| ++
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~----------~~~~~d~~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~ 79 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVD----------ANFSTDSSLELWSLLAADSEKPIASL---QVDSKFNDLDWSHNN 79 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCC----------SSCCCCCCCEEEESSSGGGCSCSCCC---CCSSCEEEEEECSSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccc----------cccCCCCeEEEEEccCCCCCcEEEEE---ecCCceEEEEECCCC
Confidence 3778899999976 555542221110 111112223333333332 23333 68999999999 79
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-e--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-K--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
++|++|+.||.|++||+...... ......+.+|...|.+++|+++ . |++++.||.|++||+.+.....
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~- 150 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANNA--------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP- 150 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTSC--------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT-
T ss_pred CeEEEEccCCeEEEeeccccccc--------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc-
Confidence 99999999999999999872100 0011236689999999999976 3 9999999999999998873100
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 241 (450)
..+ ... .......|...|.+++|+|+ +.++++++.||.|++||+++
T Consensus 151 --------~~~-~~~------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 151 --------SNY-TPL------------------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp --------TTC-CCB------------------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred --------ccc-ccc------------------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 000 000 00112358889999999998 78999999999999999999
Q ss_pred CeEEEEeeccc-----ccceEEEEEeecCCcEEEEEcCCC---cEEEEeCcchhhhccccchhhhhHh-hcccceEEEEE
Q 041325 242 FRCLESVKNAH-----DDAINAIVVSKSNDGFVYTGSADT---KIKVWKKLRAALQVNKKHSLVQTLE-KHKSAVTALAL 312 (450)
Q Consensus 242 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~ 312 (450)
++.+..+.... ...+.+++|+|++..++++++.|+ .|++||+++.. .....+. +|...|.+++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-------TPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------SCSBCCCSCCSSCEEEEEE
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------CCcEEeecCccCceeEEEe
Confidence 99988887322 788999999997667899999999 99999997753 1445566 78999999999
Q ss_pred cC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEEEeeCCC
Q 041325 313 ST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 313 ~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~ 388 (450)
+| ++++|++++.||.|++||+++++.+ ..+..|...|.+++|++ .+|++++.||.|++||+..
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~-------------~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQL-------------SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEE-------------EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccc-------------eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 99 9999999999999999999988755 56678999999999985 5899999999999999987
Q ss_pred CccccCCCc---------eeE------------------EEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 389 SVTDHQKGY---------SCL------------------AVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 389 ~~~~~~~~~---------~~~------------------~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
......... ..+ .....|..++.+++|+|+++ +|++++.|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~la~~~~d 404 (416)
T 2pm9_A 338 LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-------------LVQITPDG 404 (416)
T ss_dssp CCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-------------EECBCTTS
T ss_pred CCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-------------EEEEeCCC
Confidence 532211100 000 11122677888999999999 99999999
Q ss_pred CcEEEEEeC
Q 041325 442 CEIKIWQIR 450 (450)
Q Consensus 442 g~i~iw~l~ 450 (450)
|.|+||++.
T Consensus 405 ~~v~~w~~~ 413 (416)
T 2pm9_A 405 KGVSITNPK 413 (416)
T ss_dssp SCBCCBCCC
T ss_pred CeEEEEEec
Confidence 999999974
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=303.30 Aligned_cols=278 Identities=28% Similarity=0.530 Sum_probs=242.9
Q ss_pred eeeeEEeecCCCcc-eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEE
Q 041325 64 QCSATLKVKGNSSY-IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFS 142 (450)
Q Consensus 64 ~~~~~l~~~~h~~~-v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s 142 (450)
+..+.+. +|.+. ++|+.+++++|++|+.||.|++||+.+++.... +.+|.+.|.+++|+++.+++
T Consensus 109 ~~~~~l~--~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~l~s 174 (445)
T 2ovr_B 109 KSPKVLK--GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT------------LVGHTGGVWSSQMRDNIIIS 174 (445)
T ss_dssp CCCEEEE--CSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE------------CCCCSSCEEEEEEETTEEEE
T ss_pred ceeEEec--ccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE------------EcCCCCCEEEEEecCCEEEE
Confidence 3456677 99986 588888999999999999999999998886665 66899999999999999999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
|+.||+|++||+++++ .+ ..+.+|...|.+++++ +
T Consensus 175 ~~~dg~i~vwd~~~~~----------------~~---------------------------~~~~~h~~~v~~~~~~--~ 209 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGE----------------CI---------------------------HTLYGHTSTVRCMHLH--E 209 (445)
T ss_dssp EETTSCEEEEETTTTE----------------EE---------------------------EEECCCSSCEEEEEEE--T
T ss_pred EeCCCeEEEEECCcCc----------------EE---------------------------EEECCCCCcEEEEEec--C
Confidence 9999999999999872 22 2233688899999996 5
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
+.+++|+.||.|++||+.+++.+..+. .|...|.++.+. +.++++++.||.|++||+++++ .+..+.+
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~ 277 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETET--------CLHTLQG 277 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEEC---SSCEEEEETTSCEEEEEGGGTE--------EEEEECC
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEEC---CCEEEEEcCCCEEEEEECCCCc--------EeEEecC
Confidence 789999999999999999999998888 899999999993 4589999999999999997765 5666778
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEE
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIR 382 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~ 382 (450)
|...|.+++| +++++++|+.||.|++||+++++.+ ..+.+|...+.++.++++++++|+.||.|+
T Consensus 278 ~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 278 HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI-------------HTLTGHQSLTSGMELKDNILVSGNADSTVK 342 (445)
T ss_dssp CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE-------------EEECCCCSCEEEEEEETTEEEEEETTSCEE
T ss_pred CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE-------------EEEcCCcccEEEEEEeCCEEEEEeCCCeEE
Confidence 9999999999 7899999999999999999988755 566789999999999999999999999999
Q ss_pred EeeCCCCccccCCCceeEEEecC---CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 383 IWRRSSSVTDHQKGYSCLAVLEG---HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+||++++ +++..+.+ |...|.+++|+ +. +|++|+.||.|++||++
T Consensus 343 vwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~--~~-------------~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 343 IWDIKTG--------QCLQTLQGPNKHQSAVTCLQFN--KN-------------FVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEETTTC--------CEEEEECSTTSCSSCEEEEEEC--SS-------------EEEEEETTSEEEEEETT
T ss_pred EEECCCC--------cEEEEEccCCCCCCCEEEEEEC--CC-------------EEEEEeCCCeEEEEECC
Confidence 9999874 56667765 88999999995 45 89999999999999974
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=310.75 Aligned_cols=323 Identities=15% Similarity=0.232 Sum_probs=237.9
Q ss_pred CCccceeeeEE-eecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCC---CCceeeeecCCCCcceeEEecCCCceE
Q 041325 59 AASEHQCSATL-KVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDP---NNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 59 ~~~~~~~~~~l-~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
+.+.++++.++ + +|.+.|++++| ++++|++|+.||.|+|||+.+ +..... ....+|...|.
T Consensus 48 w~~~g~~~~~~~~--~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----------~~~~~h~~~v~ 115 (437)
T 3gre_A 48 GNLRGKLIATLME--NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS----------SLTYDCSSTVT 115 (437)
T ss_dssp GGCCCCEEEEECT--TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC----------SEEEECSSCEE
T ss_pred ccccceEEeeecc--CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce----------eeeccCCCCEE
Confidence 44667888888 6 99999999999 478999999999999999876 321110 11236999999
Q ss_pred EEEEeCCe--EEEEeCCCeEEEEEcC---CCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 132 SLVVLGDK--LFSAHQDHKIRVWKID---NNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 132 ~l~~~~~~--l~s~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
+++|+++. |++++.||+|++||++ .+........ ..+. ...+
T Consensus 116 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~i~-------------------------~~~~ 162 (437)
T 3gre_A 116 QITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC--------ECIR-------------------------KINL 162 (437)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE--------EEEE-------------------------EEEG
T ss_pred EEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc--------ceeE-------------------------EEEc
Confidence 99999865 9999999999999995 3321110000 0000 0011
Q ss_pred ec--CCCceEEEE--EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc-cccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 207 VH--HVDTVSALA--LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA-HDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 207 ~~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
.. +...+.++. +++++.++++++.|+.|++||+++++.+..+... |...|.+++|+|+ ..+|++|+.||.|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIW 241 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEE
Confidence 11 566788888 5689999999999999999999999999998832 8899999999985 5589999999999999
Q ss_pred eCcchhhhccccchhhhhHh-hcccceEEEEEcC----CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee------
Q 041325 282 KKLRAALQVNKKHSLVQTLE-KHKSAVTALALST----DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV------ 350 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~----~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~------ 350 (450)
|+++++ .+..+. .|...|.+++|+| ++++|++|+.||.|++||+++++.+..+........
T Consensus 242 d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 242 DIRFNV--------LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp ETTTTE--------EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred EcCCcc--------EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 998765 444443 5777899996654 678999999999999999999887654443221111
Q ss_pred -----eeccccC--CccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCC---------------------------
Q 041325 351 -----LKGALRG--HTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQK--------------------------- 395 (450)
Q Consensus 351 -----~~~~~~~--~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~--------------------------- 395 (450)
....+.+ |...|++++|++. +|++|+.||.|++||+.++.....-
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred cccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 0012233 8889999999954 8999999999999999875321000
Q ss_pred --CceeEEEecCCCcceEEEEEEec--CCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 396 --GYSCLAVLEGHRRPVKCLTAVVD--SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 396 --~~~~~~~~~~h~~~v~~l~~~~~--~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
..........|...|++++|+++ +. +|++|+.||.|+||+
T Consensus 394 ~~~~~~~~~~~~h~~~I~~i~~~~~~~~~-------------~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLYHHDIINSISTCEVDETP-------------LLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------------CCCEEEEEEEESSSSE-------------EEEEEETTSCEEEEC
T ss_pred cccccccCcccccccceeeEeeeccCCce-------------EEEEEcCCceEEEeC
Confidence 00001112338999999999998 55 999999999999995
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=306.84 Aligned_cols=279 Identities=24% Similarity=0.468 Sum_probs=237.1
Q ss_pred CCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEE
Q 041325 73 GNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVW 152 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw 152 (450)
+|...|.|+++++++|++|+.||.|++||+.+++.... +.+|.+.|.+++|.++.|++|+.||+|++|
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~------------~~~h~~~v~~l~~~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI------------LTGHTGSVLCLQYDERVIITGSSDSTVRVW 198 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE------------ECCCSSCEEEEECCSSEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEE------------EcCCCCcEEEEEECCCEEEEEcCCCeEEEE
Confidence 67788999999999999999999999999998886665 678999999999988789999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
|+.+++. + ..+.+|...|.+++|+ +.++++|+.||
T Consensus 199 d~~~~~~----------------~---------------------------~~~~~h~~~v~~l~~~--~~~l~s~s~dg 233 (435)
T 1p22_A 199 DVNTGEM----------------L---------------------------NTLIHHCEAVLHLRFN--NGMMVTCSKDR 233 (435)
T ss_dssp ESSSCCE----------------E---------------------------EEECCCCSCEEEEECC--TTEEEEEETTS
T ss_pred ECCCCcE----------------E---------------------------EEEcCCCCcEEEEEEc--CCEEEEeeCCC
Confidence 9998732 1 2233688899999997 45899999999
Q ss_pred cEEEEecCCCeEE---EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 233 TFKIWRTSDFRCL---ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 233 ~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.|++||+.+++.. ..+. .|...|.++.+. +.++++|+.||.|++||+++++ .+..+.+|...|.+
T Consensus 234 ~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~ 301 (435)
T 1p22_A 234 SIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCE--------FVRTLNGHKRGIAC 301 (435)
T ss_dssp CEEEEECSSSSCCEEEEEEC-CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEE
T ss_pred cEEEEeCCCCCCceeeeEec-CCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCc--------EEEEEcCCCCcEEE
Confidence 9999999987654 3444 789999999994 4589999999999999997766 56677789999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+++ +++++++|+.||.|++||+++++.+ ..+.+|...|.++++++++|++|+.||.|++||+.++
T Consensus 302 ~~~--~~~~l~~g~~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 302 LQY--RDRLVVSGSSDNTIRLWDIECGACL-------------RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCCEE-------------EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCCCCEE-------------EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCC
Confidence 999 4789999999999999999988755 5677899999999999999999999999999999764
Q ss_pred cccc-CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 390 VTDH-QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 390 ~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.... .....++..+.+|...|.+++| ++. +|++|+.||.|++||+.
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-------------~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF-------------QIVSSSHDDTILIWDFL 413 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-------------CEEECCSSSEEEEEC--
T ss_pred CCccccccchheeeccCCCCCeEEEEe--CCC-------------EEEEEeCCCEEEEEECC
Confidence 2111 1112278888999999999999 666 89999999999999974
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=299.20 Aligned_cols=297 Identities=14% Similarity=0.167 Sum_probs=234.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCC--ceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN--YVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
.|..+|++++| ++++|++|+.||.|++||+.+++ .... +.+|...|.+++|+++. |++++.|
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE------------LKEHNGQVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE------------EECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee------------ecCCCCcccEEEEeCCCCEEEEEcCC
Confidence 79999999999 79999999999999999998875 3333 67899999999999766 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
|.|++||+++++.. ....+..|...|.+++|+|++++|+
T Consensus 74 g~i~vwd~~~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~ 112 (372)
T 1k8k_C 74 RNAYVWTLKGRTWK-----------------------------------------PTLVILRINRAARCVRWAPNEKKFA 112 (372)
T ss_dssp SCEEEEEEETTEEE-----------------------------------------EEEECCCCSSCEEEEEECTTSSEEE
T ss_pred CeEEEEECCCCeee-----------------------------------------eeEEeecCCCceeEEEECCCCCEEE
Confidence 99999999877321 0111235888999999999999999
Q ss_pred EEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc----------ccc
Q 041325 227 STSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV----------NKK 293 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~ 293 (450)
+++.|+.|++||+..++ ....+...|...|.+++|+|+ ..++++++.||.|++||++...... ...
T Consensus 113 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 113 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp EEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred EEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence 99999999999998876 344444478899999999984 4589999999999999975322110 011
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--e
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--L 371 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 371 (450)
...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+ ..+..|...|.+++|+++ +
T Consensus 192 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV-------------ATLASETLPLLAVTFITESSL 258 (372)
T ss_dssp TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE-------------EEEECSSCCEEEEEEEETTEE
T ss_pred hhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee-------------EEEccCCCCeEEEEEecCCCE
Confidence 2245556678899999999999999999999999999999988755 456678889999999854 5
Q ss_pred EEEEeCCCeEEEeeCCC--Ccccc------------------------CCCceeE------EEe-cCCCcceEEEEEEec
Q 041325 372 LFSGSSDNTIRIWRRSS--SVTDH------------------------QKGYSCL------AVL-EGHRRPVKCLTAVVD 418 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~--~~~~~------------------------~~~~~~~------~~~-~~h~~~v~~l~~~~~ 418 (450)
+++| .|+.|++|++.. +.... ....... ..+ .+|..+|++++|.+.
T Consensus 259 l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 337 (372)
T 1k8k_C 259 VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 337 (372)
T ss_dssp EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES
T ss_pred EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC
Confidence 6555 999999999986 31000 0000111 223 489999999997754
Q ss_pred -C---CCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 419 -S---DYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 419 -~---~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+ . +|+||+.||.|++|+++
T Consensus 338 ~g~~~~-------------~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 338 GKAKCS-------------QFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp TTTSCS-------------EEEEEETTSEEEEEEHH
T ss_pred CCccee-------------eEEEecCCCceEEEEec
Confidence 4 6 99999999999999973
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=310.43 Aligned_cols=307 Identities=15% Similarity=0.163 Sum_probs=225.4
Q ss_pred cceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.....+... +|...|+||+| ++++||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+|.
T Consensus 108 ~~~~~~~~~--~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~----------~~~~gH~~~V~~l~f~p~ 175 (435)
T 4e54_B 108 SYRILQKAA--PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF----------IKGIGAGGSITGLKFNPL 175 (435)
T ss_dssp TTTSCCEEE--ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE----------ECCCSSSCCCCEEEECSS
T ss_pred ceeecccCC--CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE----------EEccCCCCCEEEEEEeCC
Confidence 445566677 89999999999 478999999999999999987764333 124589999999999863
Q ss_pred ---eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 139 ---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 139 ---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
.|++|+.||+|++||++......... ...+...+.+
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-----------------------------------------~~~~~~~~~~ 214 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFAS-----------------------------------------SDTINIWFCS 214 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEEC-----------------------------------------CSSCSCCCCC
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEec-----------------------------------------cCCCCccEEE
Confidence 39999999999999998763211000 0124446789
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
++|+|++++|++|+.||.|++||++. +.+..+. .|...|.+++|+|.++.++++++.|+.|++||+++.+.. .
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-----~ 287 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-----A 287 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-----S
T ss_pred EEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-----c
Confidence 99999999999999999999999964 5566666 799999999999977778999999999999999775411 1
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCce----eeeccccCCccceEEEEEe--C
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM----VLKGALRGHTKAILCLAVV--S 369 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~--~ 369 (450)
......+|...|++++|+|+|++|++|+.||.|++||+.+++............ ............+..+.+. +
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 222335688999999999999999999999999999999887653322111100 0000000011122222222 2
Q ss_pred C-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe-cCCCcceEEE-EEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 370 N-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL-EGHRRPVKCL-TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 370 ~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l-~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
. .++++..++.|++||..++ +.+..+ .+|...|.++ +|+|++. +|++|+ |+.|+|
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g--------~~~~~l~~~~~~~v~s~~~fspdg~-------------~lasg~-d~~i~i 425 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSG--------KMMCQLYDPESSGISSLNEFNPMGD-------------TLASAM-GYHILI 425 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSC--------CEEEEECCSSCCCCCCEEEECTTSS-------------CEEEEC-SSEEEE
T ss_pred CeEEEEecCCCEEEEEECCCC--------cEEEEEeCCCCCcEEEEEEECCCCC-------------EEEEEc-CCcEEE
Confidence 2 2333334568999999875 445544 5788889988 6999999 888876 889999
Q ss_pred EEeC
Q 041325 447 WQIR 450 (450)
Q Consensus 447 w~l~ 450 (450)
|+++
T Consensus 426 W~~~ 429 (435)
T 4e54_B 426 WSQQ 429 (435)
T ss_dssp CCCC
T ss_pred EECC
Confidence 9975
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=290.89 Aligned_cols=242 Identities=20% Similarity=0.293 Sum_probs=213.8
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF 141 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~ 141 (450)
...+. +|...|.++++ ++.++++|+.||+|++||+.+++.... +..|...+.+++|+|+. |+
T Consensus 73 ~~~l~--gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~------------~~~~~~~~~~~~~spdg~~l~ 138 (321)
T 3ow8_A 73 QWSLE--GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS------------IDAGPVDAWTLAFSPDSQYLA 138 (321)
T ss_dssp EEEEC--CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE------------EECCTTCCCCEEECTTSSEEE
T ss_pred eeeec--cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEE------------EeCCCccEEEEEECCCCCEEE
Confidence 34455 99999999999 789999999999999999998876655 56788899999999887 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.||.|++|+++++.. ...+..|...|.+++|+|+
T Consensus 139 ~g~~dg~v~i~~~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 139 TGTHVGKVNIFGVESGKK-------------------------------------------EYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp EECTTSEEEEEETTTCSE-------------------------------------------EEEEECSSSCEEEEEECTT
T ss_pred EEcCCCcEEEEEcCCCce-------------------------------------------eEEecCCCceEEEEEECCC
Confidence 999999999999988732 1223357778999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+++|++|+.||.|++||+++++.+..+. .|...|.+++|+|+ ..+|++++.||.|++||++.++ ....+.
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~ 245 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHAN--------LAGTLS 245 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCC--------EEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcc--------eeEEEc
Confidence 9999999999999999999999999887 89999999999984 4489999999999999997665 556677
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
+|...|.+++|+|++++|++|+.|+.|++||+.+++++ ..+.+|...|.+++|++ ++|++++.||
T Consensus 246 ~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~-------------~~~~~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 246 GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV-------------HTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-------------EEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE-------------EEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 89999999999999999999999999999999988755 56778999999999985 4999999999
Q ss_pred eEEEeeCC
Q 041325 380 TIRIWRRS 387 (450)
Q Consensus 380 ~v~iwd~~ 387 (450)
.|++||..
T Consensus 313 ~i~vwd~p 320 (321)
T 3ow8_A 313 EIHIYDCP 320 (321)
T ss_dssp CEEEEECC
T ss_pred eEEEEeCC
Confidence 99999963
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=293.88 Aligned_cols=277 Identities=21% Similarity=0.335 Sum_probs=226.6
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|++..+.+.+.+..+. ++...+++.+..+. .|...|.+++| ++++|++
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~--------------------iWd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s 114 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLI--------------------IWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEE--------------------EEETTTCCEEEEEE--CSSSCEEEEEECTTSSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEE--------------------EEECCCCCcceEee--cCCccEEEEEECCCCCEEEE
Confidence 455566666666666655554443 33444556778888 99999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCccc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
|+.||.|++|++.+...... ....+.+|.+.|.++.|+++. +++++.|++|++||++++.
T Consensus 115 ~~~d~~v~iw~~~~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~----------- 175 (340)
T 1got_B 115 GGLDNICSIYNLKTREGNVR--------VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ----------- 175 (340)
T ss_dssp EETTCEEEEEETTTCSBSCE--------EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-----------
T ss_pred EeCCCeEEEEECccCCCcce--------eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-----------
Confidence 99999999999987542111 112367999999999998666 9999999999999999872
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (450)
.+ ..+.+|.+.|.+++|+|+++++++|+.|+.|++||+++++++..+.
T Consensus 176 -----~~---------------------------~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~ 223 (340)
T 1got_B 176 -----QT---------------------------TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223 (340)
T ss_dssp -----EE---------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred -----EE---------------------------EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence 22 2334689999999999999999999999999999999999998887
Q ss_pred cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 250 NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 250 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
.|...|.+++|+|+ ..+|++|+.||.|++||++.++ .+..+ ..+...|++++|+|++++|++|+.||.
T Consensus 224 -~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 224 -GHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp -CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTE--------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred -CCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCc--------EEEEEccCCcccceEEEEECCCCCEEEEECCCCe
Confidence 89999999999995 4589999999999999997755 22222 223457999999999999999999999
Q ss_pred EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEee
Q 041325 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 328 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd 385 (450)
|++||+.+++.+ ..+.+|...|.+++|+++ +|++|+.||.|++||
T Consensus 294 i~vwd~~~~~~~-------------~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 294 CNVWDALKADRA-------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTTCCEE-------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcccCcEe-------------eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999987654 567889999999999854 999999999999997
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-40 Score=295.48 Aligned_cols=298 Identities=12% Similarity=0.196 Sum_probs=234.1
Q ss_pred eeEEeecCCCcceEEEEE--eCC-EEEEeeC---CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-
Q 041325 66 SATLKVKGNSSYIPSLAI--AGK-LLYGGSS---NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD- 138 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 138 (450)
.+.++ +|...|++++| ++. ++++|+. ||.|++||+.+++.... ...+|...|.+++|+++
T Consensus 11 ~~~~~--~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 11 AHIQK--GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-----------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp EEEEE--ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-----------EEEEESSCEEEEECTTCC
T ss_pred hhhcc--CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-----------eeecccCcEEEEEEcCCC
Confidence 34445 89999999999 564 5556766 99999999998775443 23478899999999986
Q ss_pred ---e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 139 ---K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 139 ---~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
. |++++.||.|++||+.++. .....+.+|...|.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~------------------------------------------~~~~~~~~~~~~v~ 115 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPE------------------------------------------MPVYSVKGHKEIIN 115 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCS------------------------------------------SCSEEECCCSSCEE
T ss_pred CCCceEEEecCCCeEEEEeCCCCC------------------------------------------ccEEEEEecccceE
Confidence 3 9999999999999998772 01223446889999
Q ss_pred EEE------EccCCCEEEEEeCCCcEEEEecCCCe-EEEEeecccc----cceEEEE----EeecCCcEEEEEcCCCcEE
Q 041325 215 ALA------LSSDGSLLYSTSWDRTFKIWRTSDFR-CLESVKNAHD----DAINAIV----VSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 215 ~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~v~~~~----~~~~~~~~l~~~~~dg~i~ 279 (450)
+++ |+|++++|++++.||.|++||+.+++ .+..+. .+. ..+.+++ |++ ...++++++.||.|+
T Consensus 116 ~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~ 193 (357)
T 3i2n_A 116 AIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIK 193 (357)
T ss_dssp EEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEE
T ss_pred EEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEE
Confidence 995 46899999999999999999999886 566664 333 3888998 455 455899999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcC---CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST---DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+||+++++ . .....|...|.+++|+| ++++|++|+.||.|++||+++++... ........
T Consensus 194 i~d~~~~~--------~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~ 256 (357)
T 3i2n_A 194 LFDLRNMA--------L-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK--------GFASVSEK 256 (357)
T ss_dssp EEETTTTE--------E-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT--------EEEEEEEE
T ss_pred EEECccCc--------e-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc--------ceeeeccC
Confidence 99998765 2 22345788999999999 99999999999999999998765321 01111344
Q ss_pred CCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc-----------CCCceeEEEecCCCcceEEEEEEecCCCC
Q 041325 357 GHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH-----------QKGYSCLAVLEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 357 ~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 422 (450)
+|...|++++|+++ ++++++.||.|++||++.+.... ......+..+.+|...|++++|+|+++
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-- 334 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-- 334 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST--
T ss_pred CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC--
Confidence 89999999999965 79999999999999998642211 011257888899999999999999999
Q ss_pred CCCCCCCCceEEEE-EcccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVY-SGSLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~-s~~~Dg~i~iw~l~ 450 (450)
+|+ +++.||.|++||++
T Consensus 335 -----------~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 335 -----------GLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp -----------TEEEEEETTSEEEEEEEC
T ss_pred -----------eEEEEecCCCcEEEEECC
Confidence 676 89999999999984
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=295.70 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=219.6
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCC----CCccceeeeEEeecCCCcceEEEEE-eCCE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAP----AASEHQCSATLKVKGNSSYIPSLAI-AGKL 87 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~ 87 (450)
.+..+.|+|++..+++.+.... +.-. .....+ ..+......... +|...|++++| ....
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~-~~wd-------------~~v~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~s~d~~ 107 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSS-RTWG-------------GSIWVFKDPEGAPNESLCTAGV--QTEAGVTDVAWVSEKG 107 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSS-SSCC-------------EEEEEESSCC---CGGGCSEEE--ECSSCEEEEEEETTTE
T ss_pred CEEEEEECCCCCEEEEEcCCCC-cccc-------------CeEEEEECCCCCcceeEecccC--CCCCCEEEEEEcCCCC
Confidence 6788899999999988765432 1100 000000 111122333444 79999999999 3456
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
+++++.||+|+|||+.+++.... ......+|...|.+++|+|+. |++|+.||+|++||+++++
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~--------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~------- 172 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLV--------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA------- 172 (357)
T ss_dssp EEEEETTSCEEEC--------CC--------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-------
T ss_pred EEEEECCCEEEEeeccccceeEE--------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------
Confidence 77788999999999988764332 112355899999999999876 9999999999999999872
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeE
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 244 (450)
.+ ..+.+|...|++++|++++. ++++++.||.|++||+++++.
T Consensus 173 ---------~~---------------------------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~ 216 (357)
T 4g56_B 173 ---------VL---------------------------KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP 216 (357)
T ss_dssp ---------EE---------------------------EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred ---------EE---------------------------EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence 22 23346899999999999874 789999999999999999887
Q ss_pred EEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC-CEEEEe
Q 041325 245 LESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG-TVLYSG 322 (450)
Q Consensus 245 ~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~g 322 (450)
...+. ..+...+.+++|+|+.+.+|++|+.|+.|++||+++++ .+..+.+|...|++++|+|++ ++|++|
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--------~~~~~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--------SAQTSAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--------GCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--------EeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence 76654 24667899999999777789999999999999998776 667778899999999999987 689999
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEEEeeCCCC
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~ 389 (450)
+.|+.|+|||+++++.+ ...+|...|++++|+| .+|++|+.||+|++|++.+.
T Consensus 289 s~D~~i~iwd~~~~~~~--------------~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 289 SEDCTVAVLDADFSEVF--------------RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ETTSCEEEECTTSCEEE--------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred eCCCEEEEEECCCCcEe--------------EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999987654 2347999999999974 49999999999999999753
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=301.12 Aligned_cols=299 Identities=12% Similarity=0.135 Sum_probs=236.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
+|...|++++| ++++|++|+.||.|++|| .+++.... +.+|...|.+++|+++. |++++.||.
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNV------------LNFHRAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEE------------ECCCCSCEEEEEECTTSSEEEEEETTCC
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeee------------ccCCCccEEEEEECCCCCEEEEEecCCe
Confidence 47889999999 799999999999999999 44444433 66899999999999776 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+.++............... ............+.+++|++++ .++++
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 223 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSS----------------------------INAENHSGDGSLGVDVEWVDDD-KFVIP 223 (425)
T ss_dssp EEEEETTTTEEEEEECCC-------------------------------------------CCCBSCCEEEETT-EEEEE
T ss_pred EEEEECCCCcEEEEeeccccCccc----------------------------eeeccccCCcceeeEEEEcCCC-EEEEE
Confidence 999999887432211111000000 0000011223348899999875 58889
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
+.||.|++||+.+++.+..+. .|...|.+++|+|++ .+|++++.||.|++||+++++ ....+..|...|.
T Consensus 224 ~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 224 GPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGN--------SQNCFYGHSQSIV 293 (425)
T ss_dssp CGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBS--------CSEEECCCSSCEE
T ss_pred cCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc--------cceEecCCCccEE
Confidence 999999999999998888887 789999999999854 489999999999999997765 5566677899999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~ 386 (450)
+++|+|++ ++++++.||.|++||+++++.+ ..+..|...|.+++|++ ++|++++.||.|++||+
T Consensus 294 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 294 SASWVGDD-KVISCSMDGSVRLWSLKQNTLL-------------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEETTTTEEE-------------EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred EEEECCCC-EEEEEeCCCcEEEEECCCCcEe-------------EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 99999999 9999999999999999987755 45667889999999984 59999999999999999
Q ss_pred CCCcccc------------CCCceeEEEecCCCc--ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 387 SSSVTDH------------QKGYSCLAVLEGHRR--PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 387 ~~~~~~~------------~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.++.... ......+..+.+|.. .|++++|+|+++ +|++++.||.|++|+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-------------KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-------------EEEEEESSSCCEEEECC
T ss_pred CCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-------------eEEEEecCceEEEEeec
Confidence 8642000 001127788899976 999999999999 99999999999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=299.57 Aligned_cols=296 Identities=15% Similarity=0.215 Sum_probs=239.3
Q ss_pred eeeeEEeecCCCcceEEEEE--eCC-EEEEeeCCCcEEEecC----CCCCc------eeeeecCCCCcceeEEecCCCce
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGK-LLYGGSSNGEIRAWNR----DPNNY------VNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~dg~v~vw~~----~~~~~------~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
...+.+..+.|.+.|++++| +++ +||+|+.||.|++|++ .+++. ......... ......+|.+.|
T Consensus 34 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v 111 (425)
T 1r5m_A 34 GFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFA--LSASSGKTTNQV 111 (425)
T ss_dssp CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCC--CC------CBCE
T ss_pred hhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccc--ccccccCCCCce
Confidence 45566665578899999999 688 9999999999999999 77772 222111110 011223478899
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
.+++|+++. |++++.||.|++||.... ....+..
T Consensus 112 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------------------------------------------~~~~~~~ 147 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVENGELRLWNKTGA--------------------------------------------LLNVLNF 147 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSC--------------------------------------------EEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC--------------------------------------------eeeeccC
Confidence 999999876 999999999999994322 1122336
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc---------------eEEEEEeecCCcEEEEEc
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA---------------INAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~ 273 (450)
|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. .+... +.++.|++ ++.+++++
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 224 (425)
T 1r5m_A 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVD--DDKFVIPG 224 (425)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC---------------CCCBSCCEEEE--TTEEEEEC
T ss_pred CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcC--CCEEEEEc
Confidence 88899999999999999999999999999999999888887 45555 89999996 35799999
Q ss_pred CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
.+|.|++||+++++ ....+..|...|.+++|+|++++|++++.||.|++||+++++.+ .
T Consensus 225 ~~g~i~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~ 283 (425)
T 1r5m_A 225 PKGAIFVYQITEKT--------PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ-------------N 283 (425)
T ss_dssp GGGCEEEEETTCSS--------CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS-------------E
T ss_pred CCCeEEEEEcCCCc--------eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc-------------e
Confidence 99999999997765 55566678999999999999999999999999999999987644 4
Q ss_pred cccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 354 ALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
.+..|...|.+++|+++ ++++++.||.|++||+.++ +.+..+..|...|.+++|+|++.
T Consensus 284 ~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~s~~~~------------ 343 (425)
T 1r5m_A 284 CFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN--------TLLALSIVDGVPIFAGRISQDGQ------------ 343 (425)
T ss_dssp EECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT--------EEEEEEECTTCCEEEEEECTTSS------------
T ss_pred EecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC--------cEeEecccCCccEEEEEEcCCCC------------
Confidence 56678999999999966 9999999999999999874 67888889999999999999999
Q ss_pred EEEEEcccCCcEEEEEeC
Q 041325 433 FLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.||.|++||++
T Consensus 344 -~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 344 -KYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp -EEEEEETTSCEEEEECH
T ss_pred -EEEEEECCCeEEEEECC
Confidence 99999999999999973
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=302.35 Aligned_cols=304 Identities=12% Similarity=0.085 Sum_probs=221.6
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCC--CceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN--NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
.|..+|++++| |+++|++|+.||.|++||+.++ +.... +.+|...|.+++|+++. |++++.|
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~------------~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART------------FSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCC------------BCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEE------------EecCCceEEEEEEeCCCCEEEEEeCC
Confidence 56789999999 7999999999999999999876 33332 56899999999999875 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
|+|++||+.++.. ......+..|...|.+++|+|++++|+
T Consensus 77 ~~v~vwd~~~~~~----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~ 116 (377)
T 3dwl_C 77 RNAYVYEKRPDGT----------------------------------------WKQTLVLLRLNRAATFVRWSPNEDKFA 116 (377)
T ss_dssp SSEEEC------C----------------------------------------CCCEEECCCCSSCEEEEECCTTSSCCE
T ss_pred CeEEEEEcCCCCc----------------------------------------eeeeeEecccCCceEEEEECCCCCEEE
Confidence 9999999987620 001223346889999999999999999
Q ss_pred EEeCCCcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc----------cc
Q 041325 227 STSWDRTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN----------KK 293 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------~~ 293 (450)
+++.|+.|++||+++++. ...+...|...|.+++|+|+ ..+|++++.||.|++||++....... ..
T Consensus 117 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 195 (377)
T 3dwl_C 117 VGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF 195 (377)
T ss_dssp EEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCE
T ss_pred EEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccch
Confidence 999999999999998873 66666348999999999984 45899999999999999864321110 01
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--e
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--L 371 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 371 (450)
...+..+ .|...|.+++|+|++++|++++.||.|++||+.+++.. ......+.+|...|.+++|+++ +
T Consensus 196 ~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~ 265 (377)
T 3dwl_C 196 NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP---------PRALITVKLSQLPLRSLLWANESAI 265 (377)
T ss_dssp EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC---------EEECCCEECSSSCEEEEEEEETTEE
T ss_pred hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc---------ceeeEeecCCCCceEEEEEcCCCCE
Confidence 2244455 78999999999999999999999999999999987641 1123667889999999999844 8
Q ss_pred EEEEeCCCeEEEeeCCCCcc------ccCC---------------C-c---------eeEE-------------EecCCC
Q 041325 372 LFSGSSDNTIRIWRRSSSVT------DHQK---------------G-Y---------SCLA-------------VLEGHR 407 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~------~~~~---------------~-~---------~~~~-------------~~~~h~ 407 (450)
|++|+.++.+ +|+...... .... . . .... ....|.
T Consensus 266 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~ 344 (377)
T 3dwl_C 266 VAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQ 344 (377)
T ss_dssp EEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCS
T ss_pred EEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcccc
Confidence 8888766666 666542110 0000 0 0 0001 112399
Q ss_pred cceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 408 ~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..|+++++.+... .+...|+|||.||.|++||+
T Consensus 345 ~~i~~~~~~~~~~---------~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 345 NMIATLRPYAGTP---------GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SCEEEEEEEEEET---------TEEEEEEEEETTSEEEEECC
T ss_pred ceeEEEeccCCCC---------CceEEEEeecCCCcEEEecC
Confidence 9999999887654 01225999999999999996
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=289.22 Aligned_cols=299 Identities=15% Similarity=0.151 Sum_probs=223.2
Q ss_pred CcceEEEEE--eCCEEEEeeCCC-------cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEE--
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNG-------EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSA-- 143 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg-------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-- 143 (450)
.-+|+|++| |+++|++|+.|. .|++|++.......... ........+.+|...|.++++.++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~--~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ--FHILSEFALEDNDDSPTAIDASKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH--EEEEEEEECCTTSCCCCEEEEETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee--eeeeeEEEccCCCCceEEEEeCCCEEEEEEC
Confidence 458999999 799999987543 59999987654321100 01112234678899999999998876665
Q ss_pred ---------eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 144 ---------HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 144 ---------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+.|+.+++|++....... ...... .......+...+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~------------~~~~~~----------------------~~~~~~~~~~~~~ 137 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQL------------EFLTSV----------------------DFDASTNADDYTK 137 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEE------------EEEEEE----------------------CSSCCCCTTCCEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceE------------EEeeee----------------------ceeecCCcccCEE
Confidence 457778888876653210 000000 0011123556789
Q ss_pred EEEEccCCCEEEEEe--CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 215 ALALSSDGSLLYSTS--WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
+++|+|||+++++++ .|++|+|||+++++++..+. |...|.+++|+|++ .++++++.+ .+.+|+..+++.
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~---- 209 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSC---- 209 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCE----
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcc----
Confidence 999999999987554 78999999999999998886 77889999999854 478888755 566666655431
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC----cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR----SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
........|...|.+++|+|+++++++++.|+ .+++|++...... ......+.+|...|++++|+
T Consensus 210 --~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~V~~~~~S 278 (365)
T 4h5i_A 210 --IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS---------VLRSKQVTNRFKGITSMDVD 278 (365)
T ss_dssp --EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE---------EEEEEEEESSCSCEEEEEEC
T ss_pred --eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec---------ceeeeeecCCCCCeEeEEEC
Confidence 11223445788899999999999999999887 6888998765432 12335677899999999998
Q ss_pred CC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 369 SN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 369 ~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++ +||+|+.|+.|+|||++++ +++.. +.+|...|++|+|+||++ +|+|||.|++|+
T Consensus 279 pdg~~lasgs~D~~V~iwd~~~~--------~~~~~~~~gH~~~V~~v~fSpdg~-------------~laS~S~D~tvr 337 (365)
T 4h5i_A 279 MKGELAVLASNDNSIALVKLKDL--------SMSKIFKQAHSFAITEVTISPDST-------------YVASVSAANTIH 337 (365)
T ss_dssp TTSCEEEEEETTSCEEEEETTTT--------EEEEEETTSSSSCEEEEEECTTSC-------------EEEEEETTSEEE
T ss_pred CCCCceEEEcCCCEEEEEECCCC--------cEEEEecCcccCCEEEEEECCCCC-------------EEEEEeCCCeEE
Confidence 54 9999999999999999875 66766 579999999999999999 999999999999
Q ss_pred EEEe
Q 041325 446 IWQI 449 (450)
Q Consensus 446 iw~l 449 (450)
||||
T Consensus 338 vw~i 341 (365)
T 4h5i_A 338 IIKL 341 (365)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9998
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=305.54 Aligned_cols=329 Identities=17% Similarity=0.229 Sum_probs=248.3
Q ss_pred CCCCccceeeeEEeecCCCc---ceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEE-e---cC
Q 041325 57 APAASEHQCSATLKVKGNSS---YIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVA-T---GN 126 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~---~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-~---~h 126 (450)
.+...+.+++..+. +|.. .|++++| + +++|++|+.||.|++||+.+++.... + . +|
T Consensus 187 vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~~~~~~ 252 (615)
T 1pgu_A 187 FYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY------------IEDDQEPV 252 (615)
T ss_dssp EEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE------------CCBTTBCC
T ss_pred EEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE------------eccccccc
Confidence 34455678888888 9999 9999999 6 89999999999999999998886665 3 3 78
Q ss_pred CCceEEEEEe-CCeEEEEeCCCeEEEEEcCCCceeEEeccCccc-ccceeeeeeccCCCcceeEeeecCceEEEeecc--
Q 041325 127 GDAVKSLVVL-GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLK-NKYYERIATLPTLNDRFTKCFLANNYVQVRRHK-- 202 (450)
Q Consensus 127 ~~~v~~l~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 202 (450)
...|.+++|+ +..|++++.||.|++||+++++........... ......+. .+ .+...+....++.+.++...
T Consensus 253 ~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV-AT--GNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE-EE--ETTEEEEEETTSCEEEEETTEE
T ss_pred CCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE-eC--CCCeEEEEECCCCEEEEECCCC
Confidence 8999999997 223999999999999999988665443332110 00111111 11 22233333333333333211
Q ss_pred --eeee---------------------------------ecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC------
Q 041325 203 --KCTW---------------------------------VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD------ 241 (450)
Q Consensus 203 --~~~~---------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------ 241 (450)
...+ ..|...|.+++| +++..+++++.|+.|++||+.+
T Consensus 330 ~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 408 (615)
T 1pgu_A 330 EVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQ 408 (615)
T ss_dssp EEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSC
T ss_pred cEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCC
Confidence 1122 345666666666 4467788888888888887753
Q ss_pred ----------------------------CeEEEEeecccccceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhccc
Q 041325 242 ----------------------------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 242 ----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~ 292 (450)
++.+..+. +...+.+++++ ..++++++. ||.|++||+..++
T Consensus 409 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~----- 478 (615)
T 1pgu_A 409 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLE----- 478 (615)
T ss_dssp EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEE-----
T ss_pred ceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc--cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCcc-----
Confidence 33333333 66788899888 458999999 9999999997765
Q ss_pred cchhh-hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeC-
Q 041325 293 KHSLV-QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVS- 369 (450)
Q Consensus 293 ~~~~~-~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~- 369 (450)
.. ..+..|...|++++|+|++++|++++.||.|++||+.+++.+ ..+.+ |...|++++|++
T Consensus 479 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~h~~~v~~~~~sp~ 542 (615)
T 1pgu_A 479 ---VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-------------TSRWAFRTSKINAISWKPA 542 (615)
T ss_dssp ---EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-------------ECCSCCCSSCEEEEEECCC
T ss_pred ---ccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce-------------eEeecCCCCceeEEEEcCc
Confidence 22 556678999999999999999999999999999999988755 45555 999999999966
Q ss_pred ---------C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 370 ---------N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 370 ---------~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
+ +|++++.||.|++||+.++ .+++..+.+|...|++++|+|++. |+++
T Consensus 543 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~h~~~v~~l~~s~~~~--------------l~s~ 601 (615)
T 1pgu_A 543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRP-------MKIIKALNAHKDGVNNLLWETPST--------------LVSS 601 (615)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCT-------TCCEEETTSSTTCEEEEEEEETTE--------------EEEE
T ss_pred cccccccccCCCEEEEEcCCCcEEEEECCCC-------ceechhhhcCccceEEEEEcCCCC--------------eEEe
Confidence 4 9999999999999999874 256778899999999999999975 8999
Q ss_pred ccCCcEEEEEeC
Q 041325 439 SLDCEIKIWQIR 450 (450)
Q Consensus 439 ~~Dg~i~iw~l~ 450 (450)
+.||.|++|+++
T Consensus 602 ~~d~~v~iw~~~ 613 (615)
T 1pgu_A 602 GADACIKRWNVV 613 (615)
T ss_dssp ETTSCEEEEEEC
T ss_pred cCCceEEEEeee
Confidence 999999999985
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=302.49 Aligned_cols=304 Identities=12% Similarity=0.027 Sum_probs=219.4
Q ss_pred CCcceEEEEE--eC---------CEEEE-------------------eeCCCcEEEecCCCCCceeeeecCCCCcceeEE
Q 041325 74 NSSYIPSLAI--AG---------KLLYG-------------------GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVA 123 (450)
Q Consensus 74 h~~~v~~~~~--d~---------~~l~t-------------------gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 123 (450)
+.+.|.+|+| ++ ++||+ ++.||+|+|||+.+++.... ....+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~--------~~~~l 203 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV--------KVQTI 203 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE--------EEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce--------EEEEE
Confidence 5788888888 44 56665 55788999999877663211 11235
Q ss_pred ecCCCceEEEEEeCC--------eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCce
Q 041325 124 TGNGDAVKSLVVLGD--------KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNY 195 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~--------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
.+|.+.|.+++|+|+ .|++++.||+|++||+..+.... . ... .
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~--------~---~~~-~----------------- 254 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV--------H---VFK-M----------------- 254 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS--------S---EEE-C-----------------
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc--------c---cce-e-----------------
Confidence 678889999999985 49999999999999998662100 0 000 0
Q ss_pred EEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE-EEEeecccccceEEEE--EeecCCcEEEEE
Q 041325 196 VQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIV--VSKSNDGFVYTG 272 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~--~~~~~~~~l~~~ 272 (450)
...+...+.+|...|.+++|++++ .|++|+.||+|++||++++.. ...+. .|...|.+++ +++++..+|+++
T Consensus 255 ---~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 255 ---CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp ---CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEE
T ss_pred ---ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEe
Confidence 001223455789999999999864 899999999999999987643 34455 7999999994 444322689999
Q ss_pred cCCCcEEEEeCcchhhhccccchhhhhHhhccc--ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS--AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 350 (450)
+.|++|++||+++++ ....+.+|.. .|.+++|+|+++.+++++.|+.|++||++++.++
T Consensus 330 S~D~tvklWD~~~~~--------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~----------- 390 (524)
T 2j04_B 330 AVDGYFYIFNPKDIA--------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV----------- 390 (524)
T ss_dssp ETTSEEEEECGGGHH--------HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC-----------
T ss_pred ccCCeEEEEECCCCC--------cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc-----------
Confidence 999999999998766 4444555543 4789999999999999999999999999987643
Q ss_pred eeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCcccc---------------------C-------------
Q 041325 351 LKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDH---------------------Q------------- 394 (450)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~---------------------~------------- 394 (450)
..+.+|...|++++|+++ +|++|+.||+|++||+....... .
T Consensus 391 --~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~ 468 (524)
T 2j04_B 391 --HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYP 468 (524)
T ss_dssp --EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC
T ss_pred --eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecc
Confidence 356689999999999954 89999999999999865321110 0
Q ss_pred --CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 395 --KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 395 --~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
....++..+.+|...|.+|+|+|++.. +.++++|+.||.|+||+++
T Consensus 469 ~~~~g~~~~~l~gh~~~V~~Vafsp~~~~----------~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 469 LTVNDVSKAKIDAHGINITCTKWNETSAG----------GKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -------------CCCSCCCEEECCSTTT----------TTEEEEECTTSEEEEEECS
T ss_pred cccCCcceeeecCCCceEEEEECCCCCCc----------cHHHHhhccCceEEEEEcc
Confidence 012345567789999999999999531 1189999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=287.90 Aligned_cols=316 Identities=19% Similarity=0.273 Sum_probs=239.2
Q ss_pred CccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCC-CcceeEEecCCCceEEEEE
Q 041325 60 ASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVG-DHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 60 ~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~ 135 (450)
....+....+. +|.+.|++++| ++++|++|+.||.|++||+.++........... ........+|...|.+++|
T Consensus 30 ~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 107 (408)
T 4a11_B 30 LELNKDRDVER--IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW 107 (408)
T ss_dssp EEECTTEEECC--CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE
T ss_pred cccCcceeeee--ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE
Confidence 34445566666 99999999999 689999999999999999998765443211000 0000001259999999999
Q ss_pred eC-Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 136 LG-DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 136 ~~-~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
++ +. |++++.||.|++||+.++.. ...+ .+...
T Consensus 108 ~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------~~~~----------------------------~~~~~ 143 (408)
T 4a11_B 108 YPHDTGMFTSSSFDKTLKVWDTNTLQT----------------ADVF----------------------------NFEET 143 (408)
T ss_dssp CTTCTTCEEEEETTSEEEEEETTTTEE----------------EEEE----------------------------ECSSC
T ss_pred ccCCCcEEEEEeCCCeEEEeeCCCCcc----------------ceec----------------------------cCCCc
Confidence 98 33 99999999999999998732 1111 25667
Q ss_pred eEEEEEcc---CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 213 VSALALSS---DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 213 v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
+.++.+++ ++.++++++.|+.|++||+++++.+..+. .|...|.+++|+|++..++++++.||.|++||++.....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 89999988 44599999999999999999999888887 799999999999976667999999999999999765411
Q ss_pred cc--------ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 290 VN--------KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 290 ~~--------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.. ...........|...|.+++|+|++++|++++.||.|++||+.+++.......... .......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~ 295 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC-------NNSKKGL 295 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-------CCCSSCC
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc-------ccccccc
Confidence 00 11112333357889999999999999999999999999999998765421111000 0001111
Q ss_pred eEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 362 ILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 362 v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
....... ...+++++.|+.|++||+.++ +++..+.+|...|++++|+|++. +|++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~v~~~~~s~~~~-------------~l~s~~~ 354 (408)
T 4a11_B 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSG--------EQITMLKGHYKTVDCCVFQSNFQ-------------ELYSGSR 354 (408)
T ss_dssp CCEECCSSSSCEEEEEETTEEEEEETTTC--------CEEEEECCCSSCEEEEEEETTTT-------------EEEEEET
T ss_pred eeEEecCCCceEEEEecCCEEEEEECcCC--------cceeeeccCCCeEEEEEEcCCCC-------------EEEEECC
Confidence 1122222 447778888999999999875 77888999999999999999999 9999999
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
||.|++||++
T Consensus 355 dg~i~iw~~~ 364 (408)
T 4a11_B 355 DCNILAWVPS 364 (408)
T ss_dssp TSCEEEEEEC
T ss_pred CCeEEEEeCC
Confidence 9999999984
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=281.59 Aligned_cols=258 Identities=21% Similarity=0.354 Sum_probs=202.5
Q ss_pred EEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 122 VATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+.+|.+.|.+++|+++.|++|+.|++|++||+..+.. .....+.
T Consensus 9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~--------------~~~~~~~--------------------- 53 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDF--------------TLIDVLD--------------------- 53 (330)
T ss_dssp EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCC--------------EEEEEEC---------------------
T ss_pred eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCe--------------EEEEEEe---------------------
Confidence 47799999999999999999999999999999986521 0011110
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-------CeEEEEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD-------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+|.+.|.+++|+|++++|++|+.|+.|++||+.. .+.+..+. +|...|.+++|+|+ ..+|++|+.
T Consensus 54 ----~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~-g~~las~s~ 127 (330)
T 2hes_X 54 ----ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSND-GYYLATCSR 127 (330)
T ss_dssp ----TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTT-SCEEEEEET
T ss_pred ----cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCC-CCEEEEEeC
Confidence 013889999999999999999999999999999853 34555666 89999999999995 458999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
|+.|++||++... .....+..+.+|...|.+++|+|++++|++|+.|+.|++||..++.. .....
T Consensus 128 D~~v~iwd~~~~~----~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-----------~~~~~ 192 (330)
T 2hes_X 128 DKSVWIWETDESG----EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-----------ECVAV 192 (330)
T ss_dssp TSCEEEEECCTTC----CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----------EEEEE
T ss_pred CCEEEEEeccCCC----CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-----------eEEEE
Confidence 9999999985432 12234556778999999999999999999999999999999876521 13357
Q ss_pred ccCCccceEEEEEeCC----eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCC
Q 041325 355 LRGHTKAILCLAVVSN----LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
+.+|...|.+++|+++ +|++|+.|++|++||+..+.......+.+...+.+ |...|.+++|++++
T Consensus 193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~---------- 262 (330)
T 2hes_X 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG---------- 262 (330)
T ss_dssp ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS----------
T ss_pred ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC----------
Confidence 7899999999999864 79999999999999987642221222345555655 99999999999554
Q ss_pred CceEEEEEcccCCcEEEEEe
Q 041325 430 STSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|++++.||.|++|++
T Consensus 263 ----~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 263 ----LIASVGADGVLAVYEE 278 (330)
T ss_dssp ----CEEEEETTSCEEEEEE
T ss_pred ----EEEEEeCCCEEEEEEc
Confidence 6999999999999986
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=291.93 Aligned_cols=329 Identities=17% Similarity=0.242 Sum_probs=245.5
Q ss_pred CCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee
Q 041325 15 KEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS 92 (450)
Q Consensus 15 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs 92 (450)
..+.|+|++..+.+...+..+.. +.....+....+. +| ..+....+ ++++|++|+
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i--------------------~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFL--------------------FNTIIRDGSKMLK--RA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEE--------------------EECCSEETTTTSC--SC-CEEEEEEECSSSCEEEEEE
T ss_pred cceeeeecCCeEEEEEcCCcEEE--------------------EEecccceeeEEe--cC-CceEEEEEecCCCEEEEEE
Confidence 46777888777777666555543 1222223333333 45 33333344 899999999
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccc
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.||.|++||+.+++.... +.+|...|.+++|+++. |++++.||.|++||+++++
T Consensus 117 ~dg~i~iwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------ 172 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQREI------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS------------ 172 (420)
T ss_dssp TTSCEEEECTTSCEEEEE------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------
T ss_pred CCCCEEEEeCCCcceeee------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------
Confidence 999999999988765544 45899999999999876 9999999999999998772
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN 250 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (450)
....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus 173 -------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 173 -------------------------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp -------------------------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred -------------------------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 1223447999999999999999999999999999999999999888863
Q ss_pred --ccccceEEEEEeec--------------------CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 251 --AHDDAINAIVVSKS--------------------NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 251 --~~~~~v~~~~~~~~--------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
.+...+.++++.+. ...++++++.||.|++||+++++. .......|...|.
T Consensus 222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~v~ 294 (420)
T 3vl1_A 222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-------TIQLPSKFTCSCN 294 (420)
T ss_dssp TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-------EEEECCTTSSCEE
T ss_pred CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-------eEEcccccCCCce
Confidence 34556666666432 344899999999999999977651 1222235788999
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEe-CCeEEEEeCCCeEEEee
Q 041325 309 ALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVV-SNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 309 ~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~s~~~dg~v~iwd 385 (450)
+++|+|+++ +|++|+.||.|++||+++++.. ...+.. |...|.++.+. +++|++++.||.|++|+
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECP------------VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSC------------SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc------------hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence 999999998 9999999999999999986531 123333 67788888877 44999999999999999
Q ss_pred CCCCccccC-CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 386 RSSSVTDHQ-KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 386 ~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+........ ........+..|...|.+++|+|++.. ++ .+++++.+|.+.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~g-~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDES---------NG-EVLEVGKNNFCALYNLS 418 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSS---------SC-EEEEEETTTEEEEEESC
T ss_pred ccCCCCCccceeccCccEEccCCcceEEEEEccCCCC---------cc-eEEEEcCCceEEEEecc
Confidence 886421110 001223346678999999999999871 12 36666678999999974
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=298.44 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=234.1
Q ss_pred CCcceEEEEE--eCC-EEEEe----------eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 74 NSSYIPSLAI--AGK-LLYGG----------SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 74 h~~~v~~~~~--d~~-~l~tg----------s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
+...|.+++| +++ +|++| +.||.|++||+.++..... .....|...|.+++|+++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~~~ 80 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP----------IASLQVDSKFNDLDWSHNNK 80 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC----------SCCCCCSSCEEEEEECSSSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE----------EEEEecCCceEEEEECCCCC
Confidence 4457888999 665 99999 8999999999987753211 0123688899999999877
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++++.||.|++||+...... ......+.+|...|.+++|
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~---------------------------------------~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNA---------------------------------------INSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSC---------------------------------------CCEEEECCCSSSCCCEEEE
T ss_pred eEEEEccCCeEEEeeccccccc---------------------------------------ccchhhccCCccceEEEEE
Confidence 999999999999999873100 0012233469999999999
Q ss_pred ccC-CCEEEEEeCCCcEEEEecCCCe------EEEEe--ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 219 SSD-GSLLYSTSWDRTFKIWRTSDFR------CLESV--KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 219 ~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
+|+ +++|++++.|+.|++||+.+++ ....+ ...|...|.+++|+|++..++++++.||.|++||+++++
T Consensus 122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-- 199 (416)
T 2pm9_A 122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-- 199 (416)
T ss_dssp CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--
T ss_pred cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--
Confidence 998 8999999999999999999876 33322 126888999999999756799999999999999998765
Q ss_pred ccccchhhhhHhhc------ccceEEEEEcCCC-CEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeecccc-CC
Q 041325 290 VNKKHSLVQTLEKH------KSAVTALALSTDG-TVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKGALR-GH 358 (450)
Q Consensus 290 ~~~~~~~~~~~~~~------~~~i~~l~~~~~~-~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~ 358 (450)
.+..+..+ ...|.+++|+|++ .+|++++.|+ .|++||+++++. ....+. +|
T Consensus 200 ------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~------------~~~~~~~~~ 261 (416)
T 2pm9_A 200 ------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT------------PLQTLNQGH 261 (416)
T ss_dssp ------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS------------CSBCCCSCC
T ss_pred ------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC------------CcEEeecCc
Confidence 33334333 7889999999997 6899999998 999999997632 224555 89
Q ss_pred ccceEEEEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecC-CCCCCCCCCCCceEE
Q 041325 359 TKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS-DYSNRNSDHSSTSFL 434 (450)
Q Consensus 359 ~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~~~~~~~~~~~~ 434 (450)
...|.+++|++ ++|++++.||.|++||+.++ +++..+.+|...|.+++|+|++ . +
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~-------------~ 320 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--------EQLSQFPARGNWCFKTKFAPEAPD-------------L 320 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--------CEEEEEECSSSCCCCEEECTTCTT-------------E
T ss_pred cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--------ccceeecCCCCceEEEEECCCCCC-------------E
Confidence 99999999975 49999999999999999874 6788889999999999999998 6 9
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
|++++.||.|++|+++
T Consensus 321 l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQ 336 (416)
T ss_dssp EEECCSSSEEEEEESC
T ss_pred EEEEecCCcEEEEEcc
Confidence 9999999999999974
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=285.51 Aligned_cols=288 Identities=18% Similarity=0.270 Sum_probs=234.2
Q ss_pred eeeeEEeecCCCcc--eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSY--IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~--v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.+.+.+...+|... +.+++|++..+++++.||.|++||+.+++.... ....|...|.+++|+++.
T Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 80 TPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------AETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------EECCTTCCEEEEEECTTSSE
T ss_pred CcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------eecCCCCCEEEEEECCCCCE
Confidence 34456666677764 666888888899999999999999999886655 123488899999999876
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.||.|++||+.+++. ...+.+|...|.+++|
T Consensus 149 l~~~~~dg~i~iwd~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~- 184 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTK-------------------------------------------LRTMAGHQARVGCLSW- 184 (401)
T ss_dssp EEEEETTSCEEEEETTTCCE-------------------------------------------EEEECCCSSCEEEEEE-
T ss_pred EEEECCCCeEEEEECcCCeE-------------------------------------------EEEecCCCCceEEEEE-
Confidence 99999999999999988732 1223368899999999
Q ss_pred cCCCEEEEEeCCCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
+++++++++.||.|++||++ ....+..+. .|...|.+++|+| ...++++++.||.|++||+++++ ...
T Consensus 185 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~--------~~~ 253 (401)
T 4aez_A 185 -NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSI--------PKF 253 (401)
T ss_dssp -ETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSS--------EEE
T ss_pred -CCCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCC--------ccE
Confidence 46799999999999999999 455666666 8999999999998 45589999999999999997765 555
Q ss_pred hHhhcccceEEEEEcCCCC-EEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEE
Q 041325 299 TLEKHKSAVTALALSTDGT-VLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLF 373 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~-~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 373 (450)
.+..|...|.+++|+|++. ++++|+ .|+.|++||+.+++.+ ..+ .+...|.+++|++ ++++
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-------------~~~-~~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-------------NTV-DAGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-------------EEE-ECSSCEEEEEECSSSSEEE
T ss_pred EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-------------EEE-eCCCcEEEEEECCCCCeEE
Confidence 6667899999999999764 556654 7999999999988755 222 3567899999985 4777
Q ss_pred E--EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 374 S--GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 374 s--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+ |+.||.|++||+.++ .......+.+|...|.+++|+|++. +|++++.||.|++|+++
T Consensus 320 ~~~g~~dg~i~v~~~~~~------~~~~~~~~~~h~~~v~~~~~s~dg~-------------~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSS------GLTKQVDIPAHDTRVLYSALSPDGR-------------ILSTAASDENLKFWRVY 379 (401)
T ss_dssp EEECTTTCEEEEEEEETT------EEEEEEEEECCSSCCCEEEECTTSS-------------EEEEECTTSEEEEEECC
T ss_pred EEeecCCCcEEEEecCCc------cceeEEEecCCCCCEEEEEECCCCC-------------EEEEEeCCCcEEEEECC
Confidence 7 558999999999863 1244555789999999999999999 99999999999999974
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-38 Score=288.15 Aligned_cols=288 Identities=19% Similarity=0.338 Sum_probs=228.5
Q ss_pred eeeEEeecCC--CcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 65 CSATLKVKGN--SSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 65 ~~~~l~~~~h--~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.+.|...+- .-+++.|+| .+++||+|. |++|+|||..+++..... .+.+|...|++|+|++++
T Consensus 93 p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~----------~~~~~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 93 PDRILDAPEIRNDYYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLL----------QMEQPGEYISSVAWIKEGNY 161 (420)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEE----------ECCSTTCCEEEEEECTTSSE
T ss_pred CceEEECCCCcccccceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEE----------EecCCCCcEEEEEECCCCCE
Confidence 3455553222 336788999 567887775 899999999999876652 234788899999999876
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.||+|++||+++++ .+ ..+.+|...+.+++++
T Consensus 162 lasgs~Dg~v~iWd~~~~~----------------~~---------------------------~~~~~h~~~v~~~s~~ 198 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQK----------------RL---------------------------RNMTSHSARVGSLSWN 198 (420)
T ss_dssp EEEEETTSCEEEEETTTTE----------------EE---------------------------EEECCCSSCEEEEEEE
T ss_pred EEEEECCCeEEEEEcCCCc----------------EE---------------------------EEEeCCCCceEEEeeC
Confidence 9999999999999999883 22 2334688889888775
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
+.++++|+.|+.+++||...... +..+. .|...+..+.+.|. ..++++++.|+.+++|+...++ .....+.
T Consensus 199 --~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~----~~~~~~~ 270 (420)
T 4gga_A 199 --SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGE----GGWVPLQ 270 (420)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCS----SCSCCSE
T ss_pred --CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCC-CCeeeeeeccccceEEeecccc----ccceeee
Confidence 67999999999999999987544 44555 89999999999984 4489999999999999998765 2223445
Q ss_pred hHhhcccceEEEEEcCCCC-EEEE--eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE
Q 041325 299 TLEKHKSAVTALALSTDGT-VLYS--GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF 373 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~-~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 373 (450)
....|...|.+++|+|++. ++++ |+.|+.|++||+.+++.. ..+. +...+.++.|.++ .++
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-------------~~~~-~~~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-------------SAVD-AHSQVCSILWSPHYKELI 336 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-------------EEEE-CSSCEEEEEEETTTTEEE
T ss_pred eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-------------eeec-cccceeeeeecCCCCeEE
Confidence 5667889999999999654 5554 457999999999998765 2333 3456788888743 555
Q ss_pred EE--eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 374 SG--SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 374 s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++ +.|+.|+|||+.++ +++..+.+|.+.|++++|+|++. +|+|||.||+|+|||+
T Consensus 337 ~~sg~~d~~I~iwd~~~~--------~~v~~l~gH~~~V~~l~~spdg~-------------~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTM--------AKVAELKGHTSRVLSLTMSPDGA-------------TVASAAADETLRLWRC 393 (420)
T ss_dssp EEECTTTCCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-------------CEEEEETTTEEEEECC
T ss_pred EEEecCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCC-------------EEEEEecCCeEEEEEC
Confidence 54 47999999999874 78889999999999999999999 8999999999999997
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=275.76 Aligned_cols=254 Identities=17% Similarity=0.267 Sum_probs=204.7
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|.+++|++++ |++|+.|++|++||+.....
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------------------------- 43 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------------------------- 43 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc----------------------------------------
Confidence 467999999999999776 99999999999999975411
Q ss_pred ecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecC-CcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSN-DGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 274 (450)
.....+.+|.+.|.+++|++ ++++|++|+.|++|++||+++++ .+..+. .|...|.+++|+|+. ..+|++++.
T Consensus 44 -~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 44 -KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp -CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred -EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEEEEEEC
Confidence 11234457999999999986 48999999999999999998874 444454 688999999999863 458999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-------------CCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-------------GTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-------------~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
||.|++||++.... .....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++..
T Consensus 122 d~~v~~wd~~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-- 193 (297)
T 2pm7_B 122 DGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-- 193 (297)
T ss_dssp TSEEEEEEBCSSSC------BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE--
T ss_pred CCcEEEEEecCCCc------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--
Confidence 99999999976431 012345678899999999997 579999999999999999875421
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe--cCCCcceEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL--EGHRRPVKCLT 414 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~ 414 (450)
......+.+|...|.+++|++ ++|++++.|++|++||++... .. .....+ ..|...|.+++
T Consensus 194 -------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~----~~-~~~~~~~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 194 -------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ----GP-WKKTLLKEEKFPDVLWRAS 261 (297)
T ss_dssp -------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT----SC-CEEEESSSSCCSSCEEEEE
T ss_pred -------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC----Cc-cceeeeecccCCCcEEEEE
Confidence 123356789999999999986 489999999999999987631 11 112223 56888999999
Q ss_pred EEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 415 AVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+|+++ +|++++.||.|+||++.
T Consensus 262 ~s~~g~-------------~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 262 WSLSGN-------------VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECSSSC-------------CEEEEETTSCEEEEEEC
T ss_pred ECCCCC-------------EEEEEcCCCcEEEEEEC
Confidence 999999 89999999999999863
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=273.14 Aligned_cols=252 Identities=20% Similarity=0.234 Sum_probs=199.4
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC----CeEEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG----DKLFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~d 146 (450)
+|...|++++| +|++||+|+.||+|+|||+.+.... ....+.+|.++|.+++|++ +.|++|+.|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~----------~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK----------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC----------CCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE----------EEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 99999999999 7999999999999999998753211 1123779999999999974 349999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSL 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 224 (450)
|+|++||++++.. .....+..|...|.+++|+|+ +.+
T Consensus 77 ~~v~iWd~~~~~~-----------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~ 115 (297)
T 2pm7_B 77 GKVMIWKEENGRW-----------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPM 115 (297)
T ss_dssp TEEEEEEBSSSCB-----------------------------------------CCCEEECCCSSCEEEEEECCGGGCSE
T ss_pred CEEEEEEcCCCce-----------------------------------------EEEEEeecCCCceeEEEeCcCCCCcE
Confidence 9999999986521 011223468889999999997 899
Q ss_pred EEEEeCCCcEEEEecCCCeE--EEEeecccccceEEEEEeecC------------CcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 225 LYSTSWDRTFKIWRTSDFRC--LESVKNAHDDAINAIVVSKSN------------DGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
|++++.|+.|++||++++.. ...+. .|...|.+++|+|.. ..+|++|+.|+.|++||++.++
T Consensus 116 l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~--- 191 (297)
T 2pm7_B 116 LLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--- 191 (297)
T ss_dssp EEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT---
T ss_pred EEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC---
Confidence 99999999999999987632 23344 789999999999852 3589999999999999987654
Q ss_pred cccchhhhhHhhcccceEEEEEcCCC---CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDG---TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~---~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
........+.+|...|.+++|+|++ ++|++|+.|+.|++||+++.... ..........|...|.+++|
T Consensus 192 -~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~ 262 (297)
T 2pm7_B 192 -QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASW 262 (297)
T ss_dssp -TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEE
T ss_pred -ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc--------cceeeeecccCCCcEEEEEE
Confidence 2222345677899999999999984 89999999999999999864210 00011122567889999999
Q ss_pred eC--CeEEEEeCCCeEEEeeCCC
Q 041325 368 VS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 368 ~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
++ ++|++++.||.|++|+...
T Consensus 263 s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 263 SLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCEEEEEcCCCcEEEEEECC
Confidence 85 4999999999999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=279.38 Aligned_cols=279 Identities=16% Similarity=0.282 Sum_probs=226.3
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|+...+.+.+.+..+.. +...+.+..+.+. .|...|.+++| ++.+|++
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~v--------------------Wd~~~~~~~~~~~--~~~~~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIV--------------------WDSFTTNKEHAVT--MPCTWVMACAYAPSGCAIAC 123 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEE--------------------EETTTCCEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEE--------------------EECCCCCcceEEe--cCCCCEEEEEECCCCCEEEE
Confidence 4566677777777766666655543 3334456677777 89999999999 8999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
|+.|+.+++|++........ ......+.+|...|.+++|+++. |++++.|++|++||+++++.
T Consensus 124 g~~d~~i~v~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~--------- 188 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENM------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL--------- 188 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCS------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE---------
T ss_pred eeCCCCEEEEEEeccccccc------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE---------
Confidence 99999999999875432111 11223467899999999999776 99999999999999998732
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEEE
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCLE 246 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 246 (450)
...+.+|...|.+++++| ++++|++|+.||.|++||+++++++.
T Consensus 189 ----------------------------------~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 189 ----------------------------------LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp ----------------------------------EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred ----------------------------------EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 223447899999999987 57899999999999999999999998
Q ss_pred EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeC
Q 041325 247 SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 247 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
.+. .|...|.+++|+|++ .+|++++.|+.|++||++..+ .+..+ ..+...+.+++|+|++++|++|+.
T Consensus 235 ~~~-~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~--------~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 235 AFE-THESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR--------EVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp EEC-CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--------EEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred Eec-CCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc--------EEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence 887 899999999999854 589999999999999997654 11111 223457899999999999999999
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEee
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd 385 (450)
|+.|++||+.+++.+ ..+.+|...|++++|+++ +|++|+.||.|++|+
T Consensus 305 d~~i~vwd~~~~~~~-------------~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 305 DYTINVWDVLKGSRV-------------SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSCEEEEETTTCSEE-------------EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEECCCCceE-------------EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999987754 567789999999999854 999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=276.50 Aligned_cols=291 Identities=21% Similarity=0.287 Sum_probs=227.6
Q ss_pred ccCCcccCCCccCCCC-CccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--e
Q 041325 8 PMPCRRNKEPKFQPSS-NHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--A 84 (450)
Q Consensus 8 ~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d 84 (450)
..-...+..+.|+|+. ..+.+.+.+..+..=. ........+.++++++ +|...|.+++| +
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~---------------~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~d 76 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWK---------------LTGDDQKFGVPVRSFK--GHSHIVQDCTLTAD 76 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE---------------EEEETTEEEEEEEEEE--CCSSCEEEEEECTT
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEec---------------CCCCCccccccceEEe--CCcccEEEEEECCC
Confidence 3334467778888865 5666676666665410 0000112345677888 99999999999 7
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+++|++|+.||+|++||+.+++.... +.+|...|.+++|+++. |++|+.|++|++||++...
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~---- 140 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQR------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---- 140 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE----
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEE------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----
Confidence 99999999999999999999886655 77999999999999776 9999999999999997541
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC------CCEEEEEeCCCcEEE
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD------GSLLYSTSWDRTFKI 236 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i 236 (450)
...+.+|...|.++.+.|. +..+++++.|+.|++
T Consensus 141 ----------------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 180 (319)
T 3frx_A 141 ----------------------------------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180 (319)
T ss_dssp ----------------------------------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEE
T ss_pred ----------------------------------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEE
Confidence 1223468889999999984 448999999999999
Q ss_pred EecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
||+++++....+. +|...|.+++|+|+ ..+|++++.||.|++||+++++ .+..+. +...|.+++|+|++
T Consensus 181 wd~~~~~~~~~~~-~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~--------~~~~~~-~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 181 WNLNQFQIEADFI-GHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKK--------AMYTLS-AQDEVFSLAFSPNR 249 (319)
T ss_dssp EETTTTEEEEEEC-CCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTE--------EEEEEE-CCSCEEEEEECSSS
T ss_pred EECCcchhheeec-CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc--------EEEEec-CCCcEEEEEEcCCC
Confidence 9999999888887 89999999999984 4499999999999999997765 344444 34689999999999
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
.+|++++.+ .+++|++..+..+....... ......|...+.+++|++ ++|++|+.||.|++||+.+
T Consensus 250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEF-----AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp SEEEEEETT-EEEEEEETTEEEEEEECCCC-----TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CEEEEEcCC-CcEEEEeCcCeeeeccCccc-----cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 999988755 59999998765543222111 112234667899999985 4999999999999999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=284.79 Aligned_cols=243 Identities=28% Similarity=0.512 Sum_probs=200.5
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEE
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 151 (450)
..|++++| |+++|++|+.||.|++||+.+++.... +.+|...|.+++|+++. |++++.|++|++
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~------------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~i 191 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE------------EccCCCCEEEEEEcCCCCEEEEecCCCcEEE
Confidence 35999999 799999999999999999998876554 77999999999999776 999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSW 230 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 230 (450)
||+++++. ...+ .+...+.+++|+| ++++|++|+.
T Consensus 192 wd~~~~~~----------------~~~~----------------------------~~~~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 192 WDLRTGQC----------------SLTL----------------------------SIEDGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp EETTTTEE----------------EEEE----------------------------ECSSCEEEEEECSTTCCEEEEEET
T ss_pred EECCCCee----------------EEEE----------------------------EcCCCcEEEEEECCCCCEEEEEcC
Confidence 99998732 1111 2456799999999 8999999999
Q ss_pred CCcEEEEecCCCeEEEEee------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc----ccchhhhhH
Q 041325 231 DRTFKIWRTSDFRCLESVK------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN----KKHSLVQTL 300 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~ 300 (450)
|+.|++||+++++.+..+. ..|...|.+++|+|++ .+|++++.||.|++||++....... ........+
T Consensus 228 d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1erj_A 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306 (393)
T ss_dssp TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE
Confidence 9999999999988877663 2688899999999854 4899999999999999976431110 011123345
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--------CeE
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--------NLL 372 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l 372 (450)
.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+ ..+.+|...|.+++|.+ ++|
T Consensus 307 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~-------------~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-------------LMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-------------EEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-------------EEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 678899999999999999999999999999999988755 56778999999999874 489
Q ss_pred EEEeCCCeEEEeeCCC
Q 041325 373 FSGSSDNTIRIWRRSS 388 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~ 388 (450)
++|+.||.|++|++..
T Consensus 374 ~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 374 ATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEECCCCcEEECcccc
Confidence 9999999999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=323.84 Aligned_cols=340 Identities=17% Similarity=0.265 Sum_probs=266.7
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
...+...+++++.++. +|...|++++| |+++|++|+.||.|+|||+.+++.... +.+|...|.+
T Consensus 639 i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~------------~~~~~~~v~~ 704 (1249)
T 3sfz_A 639 LQVFKAETGEKLLDIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT------------YDEHSEQVNC 704 (1249)
T ss_dssp EEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE------------EECCSSCEEE
T ss_pred EEEEECCCCCEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE------------EcCCCCcEEE
Confidence 3445556677888888 99999999999 799999999999999999999887665 6789999999
Q ss_pred EEEeCC--e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc------
Q 041325 133 LVVLGD--K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK------ 202 (450)
Q Consensus 133 l~~~~~--~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 202 (450)
++|+++ . +++|+.||.|++||+.++.......... .....+...+ ++...+....++.+.++...
T Consensus 705 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT---NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp EEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS---SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred EEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC---CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccc
Confidence 999974 2 8899999999999999886544332211 1111222111 12222233333333332210
Q ss_pred ----------------------------------------------------e-eeeecCCCceEEEEEccCCCEEEEEe
Q 041325 203 ----------------------------------------------------K-CTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 203 ----------------------------------------------------~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
. ....+|...|.+++|+|+++++++++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 0 11127888999999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc-------------------
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV------------------- 290 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------- 290 (450)
.||.|++||+.++..+..+. .|...|.+++|+|+ +..+++++.||.|++||+.......
T Consensus 860 ~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spd-g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPD-GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937 (1249)
T ss_dssp SSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEE
T ss_pred CCCeEEEEEcCCCceeeecC-CCccceEEEEECCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEE
Confidence 99999999999999998888 89999999999984 4489999999999999975421000
Q ss_pred ----------------------------------------------------cccchhhhhHhhcccceEEEEEcCCCCE
Q 041325 291 ----------------------------------------------------NKKHSLVQTLEKHKSAVTALALSTDGTV 318 (450)
Q Consensus 291 ----------------------------------------------------~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 318 (450)
.........+.+|...|++++|+|++++
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1017 (1249)
T 3sfz_A 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT 1017 (1249)
T ss_dssp EEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSC
T ss_pred EEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCE
Confidence 0011123344568889999999999999
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCc
Q 041325 319 LYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 319 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~ 397 (450)
|++++.||.|++||+.+++.. ....|...|.++.+.++ .+++++.||.|++||+.++
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~~--------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~-------- 1075 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDYV--------------FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-------- 1075 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEEE--------------CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT--------
T ss_pred EEEEcCCCEEEEEECCCCceE--------------EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC--------
Confidence 999999999999999987644 35578899999999865 8999999999999999875
Q ss_pred eeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+....+.+|...|.+++|+|++. ++++++.||.|++||++
T Consensus 1076 ~~~~~~~~~~~~v~~~~~s~d~~-------------~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1076 RIERDFTCHQGTVLSCAISSDAT-------------KFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp CCCEEEECCSSCCCCEEECSSSS-------------SCEEECCSSCCCEECSS
T ss_pred ceeEEEcccCCcEEEEEECCCCC-------------EEEEEcCCCcEEEEECC
Confidence 56778889999999999999999 89999999999999973
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=271.02 Aligned_cols=290 Identities=18% Similarity=0.300 Sum_probs=225.2
Q ss_pred eeeEEeecCCCc--ceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 65 CSATLKVKGNSS--YIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 65 ~~~~l~~~~h~~--~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.+.|...+... .+++|+| .+++||+| .|++|+|||+.+++..... .+.+|...|.+++|+++.
T Consensus 13 p~rvldap~~~~d~y~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~----------~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 13 PDRILDAPEIRNDYYLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLL----------QMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEE----------ECCSTTCCEEEEEECTTSSE
T ss_pred CCEEeeCCCCcccccceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEE----------EecCCCCeEEEEEECCCCCE
Confidence 334555334333 4688999 45677776 4899999999999877652 234788899999999876
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.||+|++||+++++. + ..+.+|...+.++.+
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~----------------~---------------------------~~~~~h~~~~~~~~~- 117 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKR----------------L---------------------------RNMTSHSARVGSLSW- 117 (318)
T ss_dssp EEEEETTSEEEEEETTTTEE----------------E---------------------------EEEECCSSCEEEEEE-
T ss_pred EEEEECCCcEEEeecCCcee----------------E---------------------------EEecCccceEEEeec-
Confidence 99999999999999998832 2 223367777776554
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
++..+++++.++.+++|+.............|...+..+.+.+. +.++++++.||.|++||+++++ ........
T Consensus 118 -~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~ 191 (318)
T 4ggc_A 118 -NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGE----GGWVPLQT 191 (318)
T ss_dssp -ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBT----TBSCCSEE
T ss_pred -CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCc----ccccceee
Confidence 56799999999999999998765444333389999999999984 4489999999999999998765 22223344
Q ss_pred HhhcccceEEEEEcCCCCEE---EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEE
Q 041325 300 LEKHKSAVTALALSTDGTVL---YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFS 374 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l---~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s 374 (450)
...+...|.+++++|++..+ ++++.++.|++||....... ....+...+..+.+.+. .+++
T Consensus 192 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 192 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--------------SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--------------EEEECSSCEEEEEEETTTTEEEE
T ss_pred ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--------------ccccceeeeeeeeecccccceEE
Confidence 45677889999999976533 46778899999999876543 23346677888888743 4444
Q ss_pred --EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 375 --GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 375 --~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+.|+.|++||+.++ +++..+.+|.+.|++++|+|++. +|+|||.||+|+|||+.
T Consensus 258 ~sg~~d~~i~iwd~~~~--------~~~~~l~gH~~~V~~l~~spdg~-------------~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTM--------AKVAELKGHTSRVLSLTMSPDGA-------------TVASAAADETLRLWRCF 314 (318)
T ss_dssp EECTTTCCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-------------CEEEEETTTEEEEECCS
T ss_pred EEEcCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCC-------------EEEEEecCCeEEEEECC
Confidence 458999999999875 78889999999999999999999 89999999999999973
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=277.21 Aligned_cols=257 Identities=23% Similarity=0.370 Sum_probs=209.3
Q ss_pred EEecCCC-ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 122 VATGNGD-AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 122 ~~~~h~~-~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
.+.+|.. .|.+++|+|++ |++|+.|++|++||++.+.... .
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------~---------------------- 53 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------K---------------------- 53 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------E----------------------
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------e----------------------
Confidence 3668887 99999999887 9999999999999998762110 0
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
.....+|...|.+++|+|++++|++|+.|+.|++||+..+. ++..+. +|...|.+++|+|+ ..+|++++.|+
T Consensus 54 ----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~-~~~l~s~s~D~ 127 (345)
T 3fm0_A 54 ----SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPS-GNLLATCSRDK 127 (345)
T ss_dssp ----EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred ----eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCC-CCEEEEEECCC
Confidence 00113699999999999999999999999999999998763 556666 89999999999994 45999999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.|++||++.+. ....+..+..|...|.+++|+|++++|++|+.|+.|++||.++++.. ....+.
T Consensus 128 ~v~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~-----------~~~~~~ 191 (345)
T 3fm0_A 128 SVWVWEVDEED-----EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV-----------CCATLE 191 (345)
T ss_dssp CEEEEEECTTS-----CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE-----------EEEEEC
T ss_pred eEEEEECCCCC-----CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE-----------EEEEec
Confidence 99999987643 12234556778999999999999999999999999999999876532 345678
Q ss_pred CCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCcccc-------CCCceeEEEecC-CCcceEEEEEEecCCCCCCCC
Q 041325 357 GHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDH-------QKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNS 426 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~ 426 (450)
+|...|++++|++ ++|++|+.|++|++||........ .....++..+.+ |...|.+++|++++.
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~------ 265 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG------ 265 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC------
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC------
Confidence 9999999999985 499999999999999974321110 112345556655 889999999999999
Q ss_pred CCCCceEEEEEcccCCcEEEEEe
Q 041325 427 DHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 427 ~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|++++.|+.|++|++
T Consensus 266 -------~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 266 -------ALATACGDDAIRVFQE 281 (345)
T ss_dssp -------CEEEEETTSCEEEEEE
T ss_pred -------EEEEEeCCCeEEEEEe
Confidence 8999999999999986
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=292.14 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=217.8
Q ss_pred eEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEE
Q 041325 78 IPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~ 153 (450)
+++++| ++++|++|+.||.|++||+.+++.... +..| ..+....|+++. |++++.||.|++||
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM------------LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLD 125 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT------------SCSC-CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeE------------EecC-CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence 446777 899999999999999999987664333 2233 334444566554 99999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
+.++. .... +.+|.+.|.+++|+|++++|++++.|+.
T Consensus 126 ~~~~~----------------~~~~---------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 162 (420)
T 3vl1_A 126 SNFNL----------------QREI---------------------------DQAHVSEITKLKFFPSGEALISSSQDMQ 162 (420)
T ss_dssp TTSCE----------------EEEE---------------------------TTSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCcc----------------eeee---------------------------cccccCccEEEEECCCCCEEEEEeCCCe
Confidence 98762 2211 2368999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh---h--------
Q 041325 234 FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE---K-------- 302 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~-------- 302 (450)
|++||+.+++.+..+. .|...|.+++|+|+ ..+|++++.||.|++||+++++ .+..+. .
T Consensus 163 i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~v~~~ 232 (420)
T 3vl1_A 163 LKIWSVKDGSNPRTLI-GHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGT--------TIHTFNRKENPHDGVNSI 232 (420)
T ss_dssp EEEEETTTCCCCEEEE-CCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTE--------EEEEECBTTBTTCCEEEE
T ss_pred EEEEeCCCCcCceEEc-CCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCc--------eeEEeecCCCCCCCccEE
Confidence 9999999999988887 89999999999985 4589999999999999998765 222222 1
Q ss_pred -------------cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 303 -------------HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 303 -------------~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
+...+.+++|+|++++|++|+.||.|++||+++++.+. .....|...|.+++|++
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~------------~~~~~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI------------QLPSKFTCSCNSLTVDG 300 (420)
T ss_dssp EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE------------EECCTTSSCEEEEEECS
T ss_pred EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE------------EcccccCCCceeEEEeC
Confidence 23455556668899999999999999999999876542 23456888999999985
Q ss_pred C---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 370 N---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 370 ~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
+ +|++|+.||.|++||++++ ..++..+.+ |...|.++. .+++. +|++++.||.|+
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~-~~~~~-------------~l~s~~~d~~v~ 359 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSP-------ECPVGEFLINEGTPINNVY-FAAGA-------------LFVSSGFDTSIK 359 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCT-------TSCSEEEEESTTSCEEEEE-EETTE-------------EEEEETTTEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC-------cCchhhhhccCCCCceEEE-eCCCC-------------EEEEecCCccEE
Confidence 5 9999999999999999874 123455555 677788874 55777 899999999999
Q ss_pred EEEeC
Q 041325 446 IWQIR 450 (450)
Q Consensus 446 iw~l~ 450 (450)
+|+++
T Consensus 360 iw~~~ 364 (420)
T 3vl1_A 360 LDIIS 364 (420)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 99974
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=278.76 Aligned_cols=254 Identities=18% Similarity=0.264 Sum_probs=199.9
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|++++|++++ |++|+.|++|++||+.++..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------------------------- 47 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------------------------- 47 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE----------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc----------------------------------------
Confidence 356999999999999765 99999999999999987621
Q ss_pred ecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecC-CcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSN-DGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 274 (450)
.....+.+|.+.|.+++|++ ++++|++|+.|++|++||+++++ ....+. .|...|.+++|+|+. ..+|++|+.
T Consensus 48 -~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~ 125 (316)
T 3bg1_A 48 -ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSS 125 (316)
T ss_dssp -EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECS
T ss_pred -EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcC
Confidence 01223557999999999976 48999999999999999998874 455555 789999999999863 458999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-----------------CCEEEEeeCCCcEEEEEcCCCc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-----------------GTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-----------------~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
|+.|++||++... .......+.+|...+.+++|+|+ +++|++|+.|+.|++||++...
T Consensus 126 D~~i~lwd~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 200 (316)
T 3bg1_A 126 DGAISLLTYTGEG-----QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200 (316)
T ss_dssp SSCEEEEEECSSS-----CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS
T ss_pred CCCEEEEecCCCC-----CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC
Confidence 9999999987542 11123455678899999999997 4789999999999999997542
Q ss_pred eeeeCCCCCCceeeeccccCCccceEEEEEeC------CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE
Q 041325 338 YIVDGDDDSGHMVLKGALRGHTKAILCLAVVS------NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK 411 (450)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~ 411 (450)
. ......+.+|...|.+++|++ ++|++++.||+|++|++..... .......+..|...|.
T Consensus 201 ~----------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~----~~~~~~~~~~~~~~v~ 266 (316)
T 3bg1_A 201 Q----------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS----NTWSPKLLHKFNDVVW 266 (316)
T ss_dssp C----------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC----CCCBCCEEEECSSCEE
T ss_pred c----------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc----cchhhhhhhcCCCcEE
Confidence 1 113356789999999999985 4799999999999999876311 0011223456889999
Q ss_pred EEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 412 CLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++|+|++. +|++++.||.|+||++
T Consensus 267 ~v~~sp~g~-------------~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 267 HVSWSITAN-------------ILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EEEECTTTC-------------CEEEEESSSCEEEEEE
T ss_pred EEEEcCCCC-------------EEEEEcCCCeEEEEEE
Confidence 999999999 8999999999999996
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=307.08 Aligned_cols=287 Identities=17% Similarity=0.299 Sum_probs=244.2
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+..+++. +|.+.|++++| ++++||+|+.||.|+|||+.+++.... +.+|...|.+++|++++
T Consensus 4 ~~~~~~~--~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 4 DIKKTFS--NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS------------IQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp CCEEEEE--EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEEEGGGTE
T ss_pred ccceeee--cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE------------EecCCCcEEEEEEeCCCCE
Confidence 4567777 99999999999 799999999999999999998876655 67899999999999877
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++++.||.|++||+.++.. ...+.+|.+.|.+++|+
T Consensus 70 l~~~~~dg~i~vw~~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~s 106 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEK-------------------------------------------VVDFEAHPDYIRSIAVH 106 (814)
T ss_dssp EEEEETTSEEEEEETTTCCE-------------------------------------------EEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCCcE-------------------------------------------EEEEecCCCCEEEEEEe
Confidence 99999999999999988732 22334688999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
|++++|++++.||.|++||+.++ .....+. .|...|.+++|+|.+...+++++.||.|++||+..+. ...
T Consensus 107 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~--------~~~ 177 (814)
T 3mkq_A 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------PNF 177 (814)
T ss_dssp SSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS--------CSE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------cee
Confidence 99999999999999999999987 5555555 8899999999998545589999999999999997654 233
Q ss_pred hHhh-cccceEEEEEcC--CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE
Q 041325 299 TLEK-HKSAVTALALST--DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF 373 (450)
Q Consensus 299 ~~~~-~~~~i~~l~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 373 (450)
.+.. +...+.+++|+| ++++|++|+.||.|++||+.+++.+ ..+.+|...|.+++|+++ +++
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-------------ATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE-------------EEEECCSSCEEEEEECSSSSEEE
T ss_pred EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE-------------EEEcCCCCCEEEEEEcCCCCEEE
Confidence 3333 348899999999 9999999999999999999987654 566789999999999854 899
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++.||.|++||+.++ +.+..+..|...+.+++|+|++.. ++++++.|+.+.+|++
T Consensus 245 ~~~~dg~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTY--------KVEKTLNVGLERSWCIATHPTGRK------------NYIASGFDNGFTVLSL 300 (814)
T ss_dssp EEETTSCEEEEETTTC--------SEEEEECCSSSSEEEEEECTTCGG------------GEEEEEETTEEEEEEC
T ss_pred EEeCCCeEEEEECCCC--------cEEEEeecCCCcEEEEEEccCCCc------------eEEEEEeCCCEEEEEc
Confidence 9999999999999874 678888899999999999999862 3455556777888875
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=285.56 Aligned_cols=270 Identities=20% Similarity=0.306 Sum_probs=212.6
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
..++...+++..+++. +|...|.+++| ++++|++|+.|+.|++||+.+...... .......+.+|.+.|.+
T Consensus 90 v~iWd~~~~~~~~~~~--~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~-----~~~~~~~~~gh~~~v~~ 162 (380)
T 3iz6_a 90 LIVWNALTSQKTHAIK--LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-----NMPVSRVLTGHKGYASS 162 (380)
T ss_dssp EEEEETTTTEEEEEEE--CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC-----SSTTCCBCCCCSSCCCC
T ss_pred EEEEECCCCccceEEe--cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC-----CccceeeccCCCcceEE
Confidence 3445556678888888 99999999999 899999999999999999876431110 01111236799999999
Q ss_pred EEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 133 LVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 133 l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
+.|.++. |++|+.|++|++||+.++... ..+.. ....+|
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----------------~~~~~----------------------~~~~~h 204 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRI----------------SIFGS----------------------EFPSGH 204 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEE----------------EEECC----------------------CSSSSC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEE----------------EEeec----------------------ccCCCC
Confidence 9998753 999999999999999988432 11110 001258
Q ss_pred CCceEEEEEcc-CCCEEEEEeCCCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 210 VDTVSALALSS-DGSLLYSTSWDRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 210 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
...|.+++|++ ++++|++|+.|+.|++||++ ..+.+..+. +|...|.+++|+|+ ..+|++|+.||.|++||+++++
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCc
Confidence 88999999987 88999999999999999998 446666676 89999999999984 4589999999999999998765
Q ss_pred hhccccchhhhhHh-------hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 288 LQVNKKHSLVQTLE-------KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 288 ~~~~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.+..+. .+...|++++|+|+|++|++|+.||.|++||+..++.+. .+.....+|..
T Consensus 283 --------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~---------~~~~~~~~h~~ 345 (380)
T 3iz6_a 283 --------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL---------NLGTLQNSHEG 345 (380)
T ss_dssp --------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE---------EECCSCSSCCC
T ss_pred --------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE---------EEecccCCCCC
Confidence 222221 123458999999999999999999999999998877552 11123367999
Q ss_pred ceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 361 AILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 361 ~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
.|++++|++ .+|++|+.||.|++|++..
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999999985 4999999999999999875
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-37 Score=270.32 Aligned_cols=276 Identities=22% Similarity=0.429 Sum_probs=224.2
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|+...+.+...+..+.. +....++..+.+. +|...|.+++| ++++|++
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~i--------------------w~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s 82 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKI--------------------WGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVS 82 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEE--------------------EETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEE--------------------EeCCCcccchhhc--cCCCceEEEEEcCCCCEEEE
Confidence 5666677777776666555544433 3334456777777 99999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
|+.||.|++||+.+++.... +.+|...|.+++|+++. |++++.||.|++||+++++.
T Consensus 83 ~~~d~~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------- 141 (312)
T 4ery_A 83 ASDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--------- 141 (312)
T ss_dssp EETTSEEEEEETTTCCEEEE------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE---------
T ss_pred ECCCCEEEEEECCCCcEEEE------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE---------
Confidence 99999999999998886655 67899999999999876 99999999999999988732
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
+ ..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+
T Consensus 142 -------~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 187 (312)
T 4ery_A 142 -------L---------------------------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187 (312)
T ss_dssp -------E---------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -------E---------------------------EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE
Confidence 1 123358889999999999999999999999999999999988887
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce---EEEEEcCCCCEEEEeeCC
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV---TALALSTDGTVLYSGACD 325 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i---~~l~~~~~~~~l~~g~~d 325 (450)
...+...+..++|+|++ .++++++.||.|++||+++++ .+..+.+|.... ......+++++|++|+.|
T Consensus 188 ~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 188 IDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK--------CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp CCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE--------EEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred eccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--------EEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 65677889999999854 489999999999999997765 444455555432 223334688999999999
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEe--CCCeEEEeeCC
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGS--SDNTIRIWRRS 387 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~--~dg~v~iwd~~ 387 (450)
|.|++||+.+++.+ ..+.+|...|.+++|+++ ++++++ .|+.|++|+..
T Consensus 259 g~i~vwd~~~~~~~-------------~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 259 NLVYIWNLQTKEIV-------------QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEEETTTCCEE-------------EEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CEEEEEECCCchhh-------------hhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999987754 677889999999999854 888886 69999999864
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=315.60 Aligned_cols=336 Identities=16% Similarity=0.227 Sum_probs=264.3
Q ss_pred eecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC
Q 041325 70 KVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ 145 (450)
Q Consensus 70 ~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 145 (450)
.+.+|.+.|++++| |+++|++|+.||.|++||+.+++.... +.+|.+.|.+++|++++ |++++.
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~------------~~~h~~~v~~~~~s~~~~~l~s~~~ 677 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD------------IKAHEDEVLCCAFSSDDSYIATCSA 677 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE------------eccCCCCEEEEEEecCCCEEEEEeC
Confidence 33499999999999 899999999999999999999886665 67899999999999876 999999
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc----eeeeecCCCceEEEEEccC
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK----KCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~ 221 (450)
||+|++||+.+++........ .....++...+..+....+....++.+.++... ...+.+|.+.|.+++|+|+
T Consensus 678 d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 678 DKKVKIWDSATGKLVHTYDEH---SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp TSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred CCeEEEEECCCCceEEEEcCC---CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence 999999999998765444322 223344444454455566666777778877543 3456789999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEee----------------------------------------------------
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVK---------------------------------------------------- 249 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------------------------------- 249 (450)
++++++++.||.|++||+.+++....+.
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 9999999999999999998765544331
Q ss_pred --cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 250 --NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 250 --~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
..|...+.+++|+|+ +.++++++.||.|++||+.++. ....+.+|...|.+++|+|++++|++++.||.
T Consensus 835 ~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~--------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~ 905 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRL--------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905 (1249)
T ss_dssp EECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCc--------eeeecCCCccceEEEEECCCCCEEEEEeCCCe
Confidence 256678899999984 4589999999999999997765 56667789999999999999999999999999
Q ss_pred EEEEEcCCCceeeeCC----------C---------CCCceeee-----ccccCCccceEEEEEeC--CeEEEEeCCCeE
Q 041325 328 ILVWERDQGNYIVDGD----------D---------DSGHMVLK-----GALRGHTKAILCLAVVS--NLLFSGSSDNTI 381 (450)
Q Consensus 328 i~vwd~~~~~~~~~~~----------~---------~~~~~~~~-----~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v 381 (450)
|++||+.+........ . ........ .....+...+.++++++ +++++|+.||.|
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i 985 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCE
Confidence 9999976421110000 0 00000000 00112345688899984 599999999999
Q ss_pred EEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
++||+.++ .....+.+|...|++++|+|+++ +|++++.||.|++||++
T Consensus 986 ~i~d~~~~--------~~~~~~~~h~~~v~~l~~s~dg~-------------~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 986 KIIELPNN--------RVFSSGVGHKKAVRHIQFTADGK-------------TLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp EEEETTTT--------SCEEECCCCSSCCCCEEECSSSS-------------CEEEECSSSBEEEEETT
T ss_pred EEEEcCCC--------ceeeecccCCCceEEEEECCCCC-------------EEEEEcCCCEEEEEECC
Confidence 99999874 56778889999999999999999 89999999999999963
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=271.08 Aligned_cols=295 Identities=19% Similarity=0.293 Sum_probs=219.0
Q ss_pred ccCCCcc-----CC-CCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--e
Q 041325 13 RNKEPKF-----QP-SSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--A 84 (450)
Q Consensus 13 ~~~~~~~-----~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d 84 (450)
.+..+.| +| ++..+.+.+.+..++.-.... .......+.+...+. +|...|.+++| +
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~-------------~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE-------------EEQNGYFGIPHKALT--GHNHFVSDLALSQE 87 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECS-------------SCCSSBSEEEEEEEC--CCSSCEEEEEECSS
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCc-------------CCcccccccccchhc--cCCCceEEEEECCC
Confidence 4556666 44 666777777776665411000 000112345667777 99999999999 7
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+.+|++|+.||+|++||+.+++.... +.+|...|.+++|+|+. |++++.|++|++||+.....
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~------------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~--- 152 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKR------------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK--- 152 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEE------------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEE------------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---
Confidence 99999999999999999998876655 77999999999999876 99999999999999974311
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC----------CEEEEEeCCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG----------SLLYSTSWDR 232 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg 232 (450)
.. .. ....|...|.+++|+|++ .++++++.|+
T Consensus 153 -------------~~-~~------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 194 (343)
T 2xzm_R 153 -------------FS-SA------------------------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194 (343)
T ss_dssp -------------EE-CC------------------------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred -------------ee-ee------------------------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence 00 00 011478899999999976 7899999999
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
.|++||. ..+....+. .|...|.+++|+|+ ..+|++|+.||.|++||++.... ....+ .+...|.+++|
T Consensus 195 ~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~~-------~~~~~-~~~~~v~~v~~ 263 (343)
T 2xzm_R 195 RLKVWNT-NFQIRYTFK-AHESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLTY-------PQREF-DAGSTINQIAF 263 (343)
T ss_dssp EEEEEET-TTEEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCSS-------CSEEE-ECSSCEEEEEE
T ss_pred EEEEEcC-CCceeEEEc-CccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCcc-------cceee-cCCCcEEEEEE
Confidence 9999994 466666676 79999999999984 44899999999999999854321 11122 24567999999
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCceee--eCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNYIV--DGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
+|++++++++ .|+.|++||+.+++... .+.... ........+|...|.+++|++ ++|++|+.||.|++|++++
T Consensus 264 sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 264 NPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEP--ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCS--GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCc--chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 9999887755 57889999998765431 111110 011122347888999999985 5999999999999999875
Q ss_pred C
Q 041325 389 S 389 (450)
Q Consensus 389 ~ 389 (450)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=272.67 Aligned_cols=281 Identities=16% Similarity=0.260 Sum_probs=229.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
-|...|.+++| ||++++++..++.+.+|......... ...+|...|.+++|+++. +++++ ||.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~h~~~v~~~~~~~~~~~l~~~~-dg~ 73 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI------------NTLNHGEVVCAVTISNPTRHVYTGG-KGC 73 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE------------EEECCSSCCCEEEECSSSSEEEEEC-BSE
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc------------eeccCCCceEEEEEecCCcEEEEcC-CCe
Confidence 45678999999 89999999888887777654432221 245899999999999877 77777 999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+..+... ..+ .......|...|.+++|+|++++++++
T Consensus 74 i~iw~~~~~~~~-------------~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (337)
T 1gxr_A 74 VKVWDISHPGNK-------------SPV-------------------------SQLDCLNRDNYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp EEEEETTSTTCC-------------SCS-------------------------EEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCCce-------------eee-------------------------ecccccCCCCcEEEEEEcCCCCEEEEE
Confidence 999999876310 000 000111588899999999999999999
Q ss_pred eCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 229 SWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+.||.|++||+.+++ ....+. .|...+.+++|+|+ ..++++++.||.|++||+++++ ....+..|...
T Consensus 116 ~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~ 185 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQT--------LVRQFQGHTDG 185 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTE--------EEEEECCCSSC
T ss_pred cCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCc--------eeeeeecccCc
Confidence 999999999999877 445555 78889999999984 4589999999999999997765 55666778999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIW 384 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iw 384 (450)
+.+++|+|++++|++++.||.|++||+++++.+. . ..+...+.+++|++ +++++++.||.|++|
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-------------~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ-------------Q-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------E-EECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCCceEe-------------e-ecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 9999999999999999999999999999877552 1 23677899999984 499999999999999
Q ss_pred eCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 385 RRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 385 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+.++ ....+..|...|.+++|+|+++ +|++++.||.|++||++
T Consensus 252 ~~~~~---------~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 252 HVNKP---------DKYQLHLHESCVLSLKFAYCGK-------------WFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ETTSS---------CEEEECCCSSCEEEEEECTTSS-------------EEEEEETTSEEEEEETT
T ss_pred ECCCC---------CeEEEcCCccceeEEEECCCCC-------------EEEEecCCCcEEEEECC
Confidence 99874 2346778999999999999999 99999999999999974
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=274.52 Aligned_cols=251 Identities=20% Similarity=0.271 Sum_probs=195.9
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC----CeEEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG----DKLFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~d 146 (450)
+|.+.|++++| +|++||+|+.|++|+|||+.++..... ..+.+|.+.|.+++|++ +.|++|+.|
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~----------~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI----------ADLRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE----------EEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE----------EEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 99999999999 799999999999999999877642211 23679999999999974 339999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSL 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 224 (450)
++|++||++++.. .....+.+|...|.+++|+|+ +.+
T Consensus 81 ~~v~iWd~~~~~~-----------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~ 119 (316)
T 3bg1_A 81 RKVIIWREENGTW-----------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLI 119 (316)
T ss_dssp SCEEEECCSSSCC-----------------------------------------CEEEEECCCSSCCCEEEECCTTTCSC
T ss_pred CEEEEEECCCCcc-----------------------------------------eEEEEccCCCCceEEEEECCCCCCcE
Confidence 9999999986521 011223468999999999997 789
Q ss_pred EEEEeCCCcEEEEecCCCeEE--EEeecccccceEEEEEeecC----------------CcEEEEEcCCCcEEEEeCcch
Q 041325 225 LYSTSWDRTFKIWRTSDFRCL--ESVKNAHDDAINAIVVSKSN----------------DGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~----------------~~~l~~~~~dg~i~vwd~~~~ 286 (450)
|++|+.|+.|++||+..+... ......|...|.+++|+|.. ..+|++|+.|+.|++||++..
T Consensus 120 lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 120 LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp EEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred EEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 999999999999999876322 22223788899999999852 247999999999999998643
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCC----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDG----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
. .......+.+|...|.+++|+|++ ++|++|+.||+|++|++.+.... . .....+..|...|
T Consensus 200 ~-----~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~------~---~~~~~~~~~~~~v 265 (316)
T 3bg1_A 200 G-----QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN------T---WSPKLLHKFNDVV 265 (316)
T ss_dssp S-----CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC------C---CBCCEEEECSSCE
T ss_pred C-----ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc------c---hhhhhhhcCCCcE
Confidence 1 112455677899999999999986 89999999999999999863110 0 0112345678899
Q ss_pred EEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 363 LCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 363 ~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
.+++|++ ++|++++.||.|++|+...
T Consensus 266 ~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 266 WHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999985 4999999999999999763
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-36 Score=280.22 Aligned_cols=339 Identities=14% Similarity=0.196 Sum_probs=222.9
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC------------CceEEEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG------------DAVKSLVVLGD 138 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~ 138 (450)
.|.+.|++++| +|++||+|+.||.|+|||+.+++.... ...........+.+|. ..|.+++|+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-ccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 46899999999 799999999999999999987662110 0000111123467888 88999999976
Q ss_pred e----EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee-eecCCCce
Q 041325 139 K----LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT-WVHHVDTV 213 (450)
Q Consensus 139 ~----l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v 213 (450)
. |++++.||+|++||+.................... ................. .......... ..+|...|
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYR---DPTTVTTLRVPVFRPMD-LMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-----------CCCCCSCCCCEEEEEE-EEEEEEEEEEECSCCSSCC
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCcccccc---CcccccceEeccccchh-eeeeccceEEeccCCCcce
Confidence 3 99999999999999987543211000000000000 00000000000000000 1111122222 35799999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCC-CeEEEEe------ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSD-FRCLESV------KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+++|+|++++|++| .|+.|++||+++ ++.+..+ ...|...|.+++|+|++..+|++|+.||.|++||++++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 999999999999998 799999999984 4444432 22688899999999966469999999999999999876
Q ss_pred hhhccccchhhhhHhh------------cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeec
Q 041325 287 ALQVNKKHSLVQTLEK------------HKSAVTALALSTDGTVLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~------------~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~ 353 (450)
+.. ......+.. |...|.+++|+|++++|++++. +.|++||+++ ++.+ .
T Consensus 260 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~-------------~ 321 (447)
T 3dw8_B 260 ALC----DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV-------------E 321 (447)
T ss_dssp SSS----CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS-------------C
T ss_pred ccc----cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc-------------c
Confidence 620 001233333 4459999999999999999998 9999999986 5533 3
Q ss_pred cccCCccc---------------eEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCC--------------------
Q 041325 354 ALRGHTKA---------------ILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKG-------------------- 396 (450)
Q Consensus 354 ~~~~~~~~---------------v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------------- 396 (450)
.+.+|... +..++|++ ++|++|+.||.|++||+.++.......
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG 401 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccC
Confidence 34444321 23477774 599999999999999998752210000
Q ss_pred ----ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 397 ----YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 397 ----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.........+...|..++|+|++. +|++++.++ +++|.-
T Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~-------------~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 402 KRKKDEISVDSLDFNKKILHTAWHPKEN-------------IIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCCTTCEEGGGCCTTSCCCEEEECSSSS-------------EEEEECSSC-EEEEEC
T ss_pred CcccccccccccccCCceeEEEECCCCC-------------EEEEEecce-eeeecc
Confidence 000000113456789999999999 899998886 788864
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-36 Score=300.17 Aligned_cols=394 Identities=9% Similarity=0.058 Sum_probs=253.8
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceee-----------eEEeecCCCcceEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCS-----------ATLKVKGNSSYIPSL 81 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~h~~~v~~~ 81 (450)
.+..+.|+|+...+.+...+..+..- .....++. ..++ +|.+.|+++
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lw--------------------d~~~~~~~~~~i~~~~~~~~~~~--~h~~~V~sl 157 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVY--------------------DIDRDQLSSFKLDNLQKSSFFPA--ARLSPIVSI 157 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEE--------------------ETTTTEEEEEEECCHHHHHTCSS--SCCCCCCEE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEE--------------------ECCCCccccceeccccccccccc--cCCCCeEEE
Confidence 46667777877777776666655441 11111111 1223 899999999
Q ss_pred EEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcc------eeEEecCCCceEEEEEeCCe--EEEEeCCCeEE
Q 041325 82 AIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA------NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIR 150 (450)
Q Consensus 82 ~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~------~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 150 (450)
+|+ +..|++|+.||.| +||+.+++............. .....+|...|.+++|+|++ |++++.||+|+
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV 236 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEE
T ss_pred EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEE
Confidence 993 4789999999999 999999876655322100000 00113456889999999887 99999999999
Q ss_pred EEEcCCCceeEEeccC----cc-----------cccceeeeeeccC--CCc-ceeEeeecC-----ceEEEeec------
Q 041325 151 VWKIDNNTSAYYSTSG----KL-----------KNKYYERIATLPT--LND-RFTKCFLAN-----NYVQVRRH------ 201 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~--~~~-~~~~~~~~~-----~~~~~~~~------ 201 (450)
+||+++++........ .. .......+...+. .++ .+......+ ..+.+...
T Consensus 237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~ 316 (902)
T 2oaj_A 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRY 316 (902)
T ss_dssp EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCG
T ss_pred EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCc
Confidence 9999988664421110 00 0112223322221 111 222222111 12222220
Q ss_pred ----------------ceeeee-cCCCceEEEEEcc----------CCCEEEEEeCCCcEEEEecCCCeEEEE-------
Q 041325 202 ----------------KKCTWV-HHVDTVSALALSS----------DGSLLYSTSWDRTFKIWRTSDFRCLES------- 247 (450)
Q Consensus 202 ----------------~~~~~~-~~~~~v~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~------- 247 (450)
....+. .+.+.|.++.+.+ +...+++++.||.|++||+.++.....
T Consensus 317 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~ 396 (902)
T 2oaj_A 317 SITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQN 396 (902)
T ss_dssp GGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGG
T ss_pred cccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCc
Confidence 011221 4567888888765 344788899999999999987754332
Q ss_pred eecccccceEEEEE----------------------------------eecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 248 VKNAHDDAINAIVV----------------------------------SKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 248 ~~~~~~~~v~~~~~----------------------------------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
+. .|...|+++++ +| ...+|++|+.|++|++||+..+.......
T Consensus 397 l~-~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 397 LS-WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GT-TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred cc-ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCce
Confidence 11 23344555544 44 34489999999999999998764210000
Q ss_pred chh--h-hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee-----------------CCCC--------
Q 041325 294 HSL--V-QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD-----------------GDDD-------- 345 (450)
Q Consensus 294 ~~~--~-~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-----------------~~~~-------- 345 (450)
... . ....+|...|++++|+||+++|++|+.||+|++||+.+++.... ....
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 000 0 00126888999999999999999999999999999987642100 0000
Q ss_pred -------CCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEE-----Eec-CCCcceE
Q 041325 346 -------SGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA-----VLE-GHRRPVK 411 (450)
Q Consensus 346 -------~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~~-~h~~~v~ 411 (450)
.....+...+.+|.+.|++++|+++ +||+|+.|++|++||++.. ..+. .+. +|...|+
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~--------~~~~~~~~~~~~~gh~~~V~ 626 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGP--------AIIYMENIREISGAQSACVT 626 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTT--------EEEEEEEGGGTCSSCCCCEE
T ss_pred ccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCC--------eEEEEeehhHhccccccceE
Confidence 0001234567789999999999844 9999999999999998763 2222 233 8999999
Q ss_pred EEEEE-----ecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 412 CLTAV-----VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 412 ~l~~~-----~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|+|+ ||+. ++.+|++|+.||+|++||+
T Consensus 627 sv~Fs~~~~~~Dg~----------~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 627 CIEFVIMEYGDDGY----------SSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEECTTSSS----------EEEEEEEEETTSEEEEEEE
T ss_pred EEEEEEEecCCCCC----------cceEEEEEecCCcEEEEEE
Confidence 99999 7751 1239999999999999997
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=302.41 Aligned_cols=211 Identities=13% Similarity=0.147 Sum_probs=168.2
Q ss_pred cCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCe
Q 041325 72 KGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHK 148 (450)
Q Consensus 72 ~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~ 148 (450)
.||...|++++| ++++||+|+.||.|+||+..+.+... ...|...|.+++|+++. |++++.|++
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~-------------~~~~~~~V~~l~fspg~~L~S~s~D~~ 80 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI-------------KLEDRSAIKEMRFVKGIYLVVINAKDT 80 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE-------------ECSSCCCEEEEEEETTTEEEEEETTCE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE-------------EcCCCCCEEEEEEcCCCEEEEEECcCe
Confidence 499999999999 79999999999999999987655332 23577899999999865 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+++++. +..+ .|.+.|++++|+|+++++++|
T Consensus 81 v~lWd~~~~~~----------------~~~~----------------------------~~~~~V~~v~~sp~g~~l~sg 116 (902)
T 2oaj_A 81 VYVLSLYSQKV----------------LTTV----------------------------FVPGKITSIDTDASLDWMLIG 116 (902)
T ss_dssp EEEEETTTCSE----------------EEEE----------------------------ECSSCEEEEECCTTCSEEEEE
T ss_pred EEEEECCCCcE----------------EEEE----------------------------cCCCCEEEEEECCCCCEEEEE
Confidence 99999998732 1111 255689999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEE----------eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch---
Q 041325 229 SWDRTFKIWRTSDFRCLES----------VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS--- 295 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--- 295 (450)
+.||.|++||+++++.... ....|...|.+++|+|.+.+.+++|+.||.| +||+++++........
T Consensus 117 s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~ 195 (902)
T 2oaj_A 117 LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP 195 (902)
T ss_dssp ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT
T ss_pred cCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC
Confidence 9999999999998876411 1126888999999998655689999999999 9999876521100000
Q ss_pred --h-----hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 296 --L-----VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 296 --~-----~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
. ......|...|++++|+|+|++|++|+.||.|++||+++++.+.
T Consensus 196 g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 196 FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 0 00112346789999999999999999999999999999887754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=274.23 Aligned_cols=300 Identities=12% Similarity=0.148 Sum_probs=214.7
Q ss_pred eEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC----CeE
Q 041325 67 ATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG----DKL 140 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l 140 (450)
+.+. +|.+.|++++| ++++|++|+.||.|++||+.++..... ....+.+|...|.+++|++ +.|
T Consensus 5 ~~~~--gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 5 PFDS--GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE--------LSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp CEEC--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE--------EEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred ccCc--ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce--------ecceeccCCCcEEEEEEcCCCCCCEE
Confidence 4455 99999999999 799999999999999999987642211 1123678999999999987 239
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
++++.||.|++||++.+.... ..... .....+..|...|.+++|+|
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~-------~~~~~---------------------------~~~~~~~~~~~~v~~~~~~~ 120 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEEC-------SGRRW---------------------------NKLCTLNDSKGSLYSVKFAP 120 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTT-------SSCSE---------------------------EEEEEECCCSSCEEEEEECC
T ss_pred EEEcCCCeEEEEecCCCcccc-------cccCc---------------------------ceeeeecccCCceeEEEEcC
Confidence 999999999999998763100 00000 11223446889999999999
Q ss_pred C--CCEEEEEeCCCcEEEEecCCCeEEEEee------------cccccceEEEEEeec--CCcEEEEEcCCCcEEEEeCc
Q 041325 221 D--GSLLYSTSWDRTFKIWRTSDFRCLESVK------------NAHDDAINAIVVSKS--NDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 221 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~vwd~~ 284 (450)
+ ++++++++.||.|++||+++++.+..+. ..+...+.+++|+|. ...++++++.++.+.+|+..
T Consensus 121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence 9 9999999999999999998876544332 156788999999985 35689999999999888765
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCC----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDG----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.++ ......+.+|...|++++|+|++ ++|++|+.||.|++||++.+.... ....+..
T Consensus 201 ~~~------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------~~~~~~~ 261 (351)
T 3f3f_A 201 DGK------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL-------------ASEESLT 261 (351)
T ss_dssp TSC------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------
T ss_pred CCc------eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc-------------ccCCccc
Confidence 543 12355667799999999999998 899999999999999998764331 1111111
Q ss_pred ceEEEEEe------CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 361 AILCLAVV------SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 361 ~v~~~~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
.+...... ......+.....+.+|+... .+.+..+.+|...|++++|+|+++ +
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~h~~~v~~~~~s~~~~-------------~ 320 (351)
T 3f3f_A 262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ--------VELLSEHDDHNGEVWSVSWNLTGT-------------I 320 (351)
T ss_dssp -----------------------------CCSEE--------EEEEEEECTTSSCEEEEEECSSSC-------------C
T ss_pred ceeccCCCcccccccccccccccceeeeeccccc--------ccEEEEEecccccEEEEEEcCCCC-------------E
Confidence 11111111 11223333445566666554 478888999999999999999999 8
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
|++|+.||.|++|+++
T Consensus 321 l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred EEEecCCCcEEEEecC
Confidence 9999999999999974
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=276.06 Aligned_cols=315 Identities=21% Similarity=0.316 Sum_probs=238.9
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
.......+...+++++.++. +|.+.|++++| .+.+|++|+.||+|++||+.+++.... +.+|...
T Consensus 140 ~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~------------~~~h~~~ 205 (464)
T 3v7d_B 140 DDKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHV------------FEGHNST 205 (464)
T ss_dssp TTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSC
T ss_pred CCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEE------------ECCCCCc
Confidence 33455667777888999998 99999999999 455999999999999999998876655 6789999
Q ss_pred eEEEEEe--CCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 130 VKSLVVL--GDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 130 v~~l~~~--~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
|.+++|. ++. +++++.||+|++||+.+............. ......+... ......
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~----------------~~~~~~ 265 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY----PLVFHTPEEN----------------PYFVGV 265 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS----SEEESCGGGC----------------TTEEEE
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc----ceEeeccCCC----------------eEEEEE
Confidence 9999998 333 999999999999999887432111110000 0000000000 011224
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
+.+|...+.++ +++++++++|+.||.|++||+.+++.+..+. .|...|.+++|+|+ ...+++|+.||.|++||+++
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTT
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Confidence 45788888877 5678999999999999999999999999887 89999999999984 44899999999999999987
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
++ .+..+.+|...|.+++|+ +++|++|+.||.|++||+.+++... .....+...+.++
T Consensus 342 ~~--------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~------------~~~~~~~~~~~~~ 399 (464)
T 3v7d_B 342 GE--------LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF------------SYHHTNLSAITTF 399 (464)
T ss_dssp TE--------EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE------------EEECTTCCCEEEE
T ss_pred Cc--------EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee------------eecCCCCccEEEE
Confidence 66 667778899999999997 5899999999999999999876442 1112223334445
Q ss_pred EEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcE
Q 041325 366 AVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444 (450)
Q Consensus 366 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i 444 (450)
..+++++++|+ ||.|++||++++ +.+.. +..|...|.+++|+ +.. ++++++.||.+
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g--------~~~~~~~~~~~~~v~~v~~~-~~~-------------l~~~~~~~g~~ 456 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSG--------KLVHANILKDADQIWSVNFK-GKT-------------LVAAVEKDGQS 456 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTC--------CEEESCTTTTCSEEEEEEEE-TTE-------------EEEEEEETTEE
T ss_pred EeCCCEEEEec-CCeEEEEECCCC--------cEEehhhccCCCcEEEEEec-CCE-------------EEEEEEeCCeE
Confidence 55577888888 999999999985 55554 67789999999997 333 67777778766
Q ss_pred EEEE
Q 041325 445 KIWQ 448 (450)
Q Consensus 445 ~iw~ 448 (450)
.+|-
T Consensus 457 ~i~~ 460 (464)
T 3v7d_B 457 FLEI 460 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=271.48 Aligned_cols=270 Identities=12% Similarity=0.131 Sum_probs=223.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEeCCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg 147 (450)
+|.+.|++++| ++++|++|+.||.|++|++.++..... .....+|...|.+++|+++ .|++++.||
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD---------LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE---------EEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc---------ceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 89999999999 799999999999999999987762111 1124589999999999844 699999999
Q ss_pred eEEEEEc-CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec--CCCceEEEEEccCCCE
Q 041325 148 KIRVWKI-DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH--HVDTVSALALSSDGSL 224 (450)
Q Consensus 148 ~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~ 224 (450)
.|++||+ ..+.. ..+.+ |...|.+++|+| +++
T Consensus 80 ~i~~wd~~~~~~~--------------------------------------------~~~~~~~~~~~v~~l~~~~-~~~ 114 (342)
T 1yfq_A 80 EILKVDLIGSPSF--------------------------------------------QALTNNEANLGICRICKYG-DDK 114 (342)
T ss_dssp CEEEECSSSSSSE--------------------------------------------EECBSCCCCSCEEEEEEET-TTE
T ss_pred eEEEEEeccCCce--------------------------------------------EeccccCCCCceEEEEeCC-CCE
Confidence 9999999 76621 12335 888999999999 999
Q ss_pred EEEEeCCCcEEEEecCC---------CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-hhhhccccc
Q 041325 225 LYSTSWDRTFKIWRTSD---------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-AALQVNKKH 294 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~ 294 (450)
+++++.|+.|++||+++ ++++..+. +...+.+++|++ +. +++++.|+.|++||++. ....
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~--~~-l~~~~~d~~i~i~d~~~~~~~~----- 184 (342)
T 1yfq_A 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNS--SR-LIVGMNNSQVQWFRLPLCEDDN----- 184 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECS--SE-EEEEESTTEEEEEESSCCTTCC-----
T ss_pred EEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecC--Cc-EEEEeCCCeEEEEECCcccccc-----
Confidence 99999999999999987 66666664 888999999985 33 99999999999999976 4310
Q ss_pred hhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCC------ceeeeCCCCCCceeeeccccCC---------
Q 041325 295 SLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQG------NYIVDGDDDSGHMVLKGALRGH--------- 358 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~--------- 358 (450)
.......+...+.+++|+| ++++|++++.||.|++|+++.. +.. ..+..|
T Consensus 185 -~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 250 (342)
T 1yfq_A 185 -GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR-------------FAFRCHRLNLKDTNL 250 (342)
T ss_dssp -CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC-------------EEEECCCCCTTCCSS
T ss_pred -ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc-------------eeeeccccccccccc
Confidence 1122335778899999999 9999999999999999999865 322 233334
Q ss_pred ccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 359 TKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 359 ~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
...|.+++|++ ++|++++.||.|++||+.++ +.+..+.+| ..+|.+++ |++. +|
T Consensus 251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~h~~~v~~~~--~~~~-------------~l 307 (342)
T 1yfq_A 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--------KKIKNFAKFNEDSVVKIA--CSDN-------------IL 307 (342)
T ss_dssp CCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------EEEEECCCCSSSEEEEEE--ECSS-------------EE
T ss_pred ceeEEEEEEcCCCCEEEEecCCceEEEEcCccH--------hHhhhhhcccCCCceEec--CCCC-------------eE
Confidence 45999999985 58999999999999999874 678889998 99999999 9998 99
Q ss_pred EEcccCCc
Q 041325 436 YSGSLDCE 443 (450)
Q Consensus 436 ~s~~~Dg~ 443 (450)
++++.||.
T Consensus 308 ~s~s~Dg~ 315 (342)
T 1yfq_A 308 CLATSDDT 315 (342)
T ss_dssp EEEEECTH
T ss_pred EEEecCCc
Confidence 99999998
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=299.38 Aligned_cols=331 Identities=18% Similarity=0.222 Sum_probs=261.7
Q ss_pred ccCCcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eC
Q 041325 8 PMPCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AG 85 (450)
Q Consensus 8 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~ 85 (450)
..-..+++.+.|+|+...+.+...+..+. ++...+++.++++. +|...|++++| ++
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~--------------------iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~ 67 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVE--------------------IWNYETQVEVRSIQ--VTETPVRAGKFIARK 67 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEE--------------------EEETTTTEEEEEEE--CCSSCEEEEEEEGGG
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEE--------------------EEECCCCceEEEEe--cCCCcEEEEEEeCCC
Confidence 33345788899999998888876554443 33445567888888 99999999999 79
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
++|++|+.||.|++||+.+++.... +.+|.+.|.+++|+++. |++++.||.|++||++++..
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---- 131 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVD------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---- 131 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEE------------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE------------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----
Confidence 9999999999999999999886665 67899999999999877 99999999999999987521
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 242 (450)
....+.+|...|.+++|+| +++.+++++.||.|++||+.++
T Consensus 132 --------------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 132 --------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (814)
T ss_dssp --------------------------------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred --------------------------------------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 1123346888999999999 8999999999999999999988
Q ss_pred eEEEEeecccccceEEEEEeec-CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 243 RCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
+....+...+...+.+++|+|. +..++++++.||.|++||+++++ ....+..|...|.+++|+|++++|++
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS--------CVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------EEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 8888777556689999999983 23489999999999999997765 56666778999999999999999999
Q ss_pred eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc--CCC
Q 041325 322 GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH--QKG 396 (450)
Q Consensus 322 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~--~~~ 396 (450)
++.||.|++||+.+++.+ ..+..|...+.+++|+++ .+++++.++.+.+|++....... ...
T Consensus 246 ~~~dg~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVE-------------KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPV 312 (814)
T ss_dssp EETTSCEEEEETTTCSEE-------------EEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSS
T ss_pred EeCCCeEEEEECCCCcEE-------------EEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCC
Confidence 999999999999987755 566778889999999865 24555557778889876432100 000
Q ss_pred ---------------------------------ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 397 ---------------------------------YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 397 ---------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
......+..+...+.+++|+|+++ ++++++ ||.
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------------~la~~~-~~~ 378 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-------------FVTVVG-DGE 378 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-------------EEEEEE-TTE
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC-------------EEEEec-CCE
Confidence 001122344556788899999888 676666 777
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
+.+|++
T Consensus 379 ~~i~~~ 384 (814)
T 3mkq_A 379 YVIYTA 384 (814)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 777764
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=271.12 Aligned_cols=288 Identities=16% Similarity=0.217 Sum_probs=226.6
Q ss_pred cceeeeEEeecCCCcceEEEEE--e---CCEEEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--A---GKLLYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--d---~~~l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
+.+.++.+. +|.+.|++++| + |++|++|+.||.|++||+.+ +..... .+.+|...|.+++|
T Consensus 28 ~~~~~~~~~--~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~h~~~v~~~~~ 94 (368)
T 3mmy_A 28 PMKDIEVTS--SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK-----------AQQMHTGPVLDVCW 94 (368)
T ss_dssp TTCCEECSS--CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE-----------EEEECSSCEEEEEE
T ss_pred CcceeEecc--CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE-----------EeccccCCEEEEEE
Confidence 345666666 99999999999 4 58999999999999999987 333211 36789999999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+++. |++++.||.|++||++++.. . .+..|...|
T Consensus 95 ~~~~~~l~s~~~dg~v~iwd~~~~~~----------------~----------------------------~~~~~~~~v 130 (368)
T 3mmy_A 95 SDDGSKVFTASCDKTAKMWDLSSNQA----------------I----------------------------QIAQHDAPV 130 (368)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEE----------------E----------------------------EEEECSSCE
T ss_pred CcCCCEEEEEcCCCcEEEEEcCCCCc----------------e----------------------------eeccccCce
Confidence 9876 99999999999999998732 1 123588899
Q ss_pred EEEEE--ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 214 SALAL--SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 214 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.+++| ++++++|++++.||.|++||+++++.+..+. ....+.++.+. .+ .+++++.++.+++|+++....
T Consensus 131 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~~~~~~~--- 202 (368)
T 3mmy_A 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--LPERCYCADVI--YP-MAVVATAERGLIVYQLENQPS--- 202 (368)
T ss_dssp EEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--CSSCEEEEEEE--TT-EEEEEEGGGCEEEEECSSSCE---
T ss_pred EEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--cCCCceEEEec--CC-eeEEEeCCCcEEEEEeccccc---
Confidence 99999 8899999999999999999999999888887 33467777776 34 788888999999999976541
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCE----EEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc-------
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTV----LYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK------- 360 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 360 (450)
...... ..+...+.++++.++... +++++.||.|++||++..... .....+..|..
T Consensus 203 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 203 -EFRRIE--SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA----------KDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp -EEEECC--CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH----------HHSEEEECSEEC----CC
T ss_pred -hhhhcc--ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc----------ccceeeeeeecccccccc
Confidence 111111 123345566666655544 999999999999999876320 11123344443
Q ss_pred -----ceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceE
Q 041325 361 -----AILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 361 -----~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
.|++++|+++ +|++++.||.|++||+.++ +++..+.+|..+|++++|+|++.
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~g~------------- 328 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR--------TKLKTSEQLDQPISACCFNHNGN------------- 328 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------EEEEECCCCSSCEEEEEECTTSS-------------
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCC--------cEEEEecCCCCCceEEEECCCCC-------------
Confidence 7999999854 9999999999999999974 77888999999999999999999
Q ss_pred EEEEcccCCcEEEEE
Q 041325 434 LVYSGSLDCEIKIWQ 448 (450)
Q Consensus 434 ~l~s~~~Dg~i~iw~ 448 (450)
+|++++.|+..+.|+
T Consensus 329 ~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 329 IFAYASSYDWSKGHE 343 (368)
T ss_dssp CEEEEECCCSTTCGG
T ss_pred eEEEEeccccccccc
Confidence 899999998665554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=286.24 Aligned_cols=284 Identities=18% Similarity=0.244 Sum_probs=236.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCC----CceeeeecCCCCcceeEEecCCCc-eEEEEEeC--Ce--EE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN----NYVNITSTDVGDHANVVATGNGDA-VKSLVVLG--DK--LF 141 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~--~~--l~ 141 (450)
.|.+.|++++| |+++|++++ ++.|++||+.++ +.... +.+|... |.+++|+| +. |+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~------------~~~h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ------------FTGHGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE------------ECTTTTSCEEEEEECSSTTCCEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE------------EecCCCceEEEEEECcCCCCCEEE
Confidence 78899999999 799999998 789999999877 54444 7799999 99999999 66 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.||.|++||+.++.... .........+..|...|.+++|+|+
T Consensus 83 s~~~dg~v~vw~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~v~~~~~s~~ 127 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESN-----------------------------------SVEVNVKSEFQVLAGPISDISWDFE 127 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGT-----------------------------------EEEEEEEEEEECCSSCEEEEEECTT
T ss_pred EecCCCEEEEEeCCCCcccc-----------------------------------cccccccchhhcccccEEEEEEeCC
Confidence 99999999999996441000 0001122234468889999999999
Q ss_pred CCEEEEEeCC----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 222 GSLLYSTSWD----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 222 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
+++|++++.+ +.|.+|| .++.+..+. .|...|.+++|+|++..++++++.|+.|++||+.+.+ ..
T Consensus 128 ~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--------~~ 196 (615)
T 1pgu_A 128 GRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--------FS 196 (615)
T ss_dssp SSEEEEEECCSSCSEEEEETT--TCCEEEECC-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--------EE
T ss_pred CCEEEEeccCCCCccEEEEEE--CCCcceeee-cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--------ee
Confidence 9999999987 7899998 566777777 8999999999999766689999999999999987665 55
Q ss_pred hhHhhccc---ceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc-c---CCccceEEEEEe-
Q 041325 298 QTLEKHKS---AVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL-R---GHTKAILCLAVV- 368 (450)
Q Consensus 298 ~~~~~~~~---~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~- 368 (450)
..+..|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+ ..+ . .|...|.+++|+
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~ 263 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL-------------KYIEDDQEPVQGGIFALSWLD 263 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE-------------EECCBTTBCCCSCEEEEEESS
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe-------------EEecccccccCCceEEEEEcC
Confidence 66777888 9999999999 999999999999999999988765 334 4 789999999995
Q ss_pred CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC----CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcE
Q 041325 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH----RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444 (450)
Q Consensus 369 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i 444 (450)
+++|++++.||.|++||+.++ +.+..+..+ ...+.++.|. ++. ++++++.||.|
T Consensus 264 ~~~l~~~~~d~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~l~~~~~~g~i 321 (615)
T 1pgu_A 264 SQKFATVGADATIRVWDVTTS--------KCVQKWTLDKQQLGNQQVGVVAT-GNG-------------RIISLSLDGTL 321 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTT--------EEEEEEECCTTCGGGCEEEEEEE-ETT-------------EEEEEETTSCE
T ss_pred CCEEEEEcCCCcEEEEECCCC--------cEEEEEcCCCCcccCceeEEEeC-CCC-------------eEEEEECCCCE
Confidence 669999999999999999874 566666665 4678888886 777 89999999999
Q ss_pred EEEEeC
Q 041325 445 KIWQIR 450 (450)
Q Consensus 445 ~iw~l~ 450 (450)
++||++
T Consensus 322 ~~~d~~ 327 (615)
T 1pgu_A 322 NFYELG 327 (615)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999974
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=273.40 Aligned_cols=260 Identities=23% Similarity=0.342 Sum_probs=220.3
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
..+.++...++++.+.+++++|...|++|+| ||++||+|+.||.|+|||+.+++.+.. +.+|...+
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~------------~~~h~~~v 192 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------MTSHSARV 192 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE------------EeCCCCce
Confidence 3345566778889999998899999999999 799999999999999999999887665 67999999
Q ss_pred EEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 131 KSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 131 ~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
.++.+++..|++|+.|+.+++||...... ....+.+|.
T Consensus 193 ~~~s~~~~~l~sgs~d~~i~~~d~~~~~~------------------------------------------~~~~~~~h~ 230 (420)
T 4gga_A 193 GSLSWNSYILSSGSRSGHIHHHDVRVAEH------------------------------------------HVATLSGHS 230 (420)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTSSSC------------------------------------------EEEEEECCS
T ss_pred EEEeeCCCEEEEEeCCCceeEeeecccce------------------------------------------eeEEecccc
Confidence 99999999999999999999999887521 122345799
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE----EEEeecccccceEEEEEeecCCcEEEE--EcCCCcEEEEeCc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC----LESVKNAHDDAINAIVVSKSNDGFVYT--GSADTKIKVWKKL 284 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~vwd~~ 284 (450)
..+..+.++++++++++++.|+.+++||..+++. +.... .|...|.+++|+|....++++ |+.|+.|++||+.
T Consensus 231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 9999999999999999999999999999987653 33333 688999999999988777765 4579999999998
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
+++ ....+. +...+.++.|+|+++.+++++ .|+.|+|||+.+++++ ..+.+|...|
T Consensus 310 t~~--------~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-------------~~l~gH~~~V 367 (420)
T 4gga_A 310 SGA--------CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-------------AELKGHTSRV 367 (420)
T ss_dssp TTE--------EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-------------EEECCCSSCE
T ss_pred ccc--------cceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE-------------EEEcCCCCCE
Confidence 776 344443 456789999999999988765 7999999999998765 5778999999
Q ss_pred EEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 363 LCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 363 ~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
++++|++ ++|+||+.|++|++||+...
T Consensus 368 ~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 368 LSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999985 49999999999999998753
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=270.90 Aligned_cols=262 Identities=23% Similarity=0.307 Sum_probs=221.3
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
......+...+++....+.. .|...|++++| ++++|++|+.||.|++||+.+++.... +.+|...
T Consensus 112 d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------~~~~~~~ 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT------------MAGHQAR 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------------ECCCSSC
T ss_pred CCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE------------ecCCCCc
Confidence 34455566667777777773 38999999999 799999999999999999998876665 6689999
Q ss_pred eEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 130 VKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 130 v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
|.+++|.++.+++++.||.|++||++... .....+.+|
T Consensus 179 v~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------------------------~~~~~~~~~ 216 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRSGAIHHHDVRIAN------------------------------------------HQIGTLQGH 216 (401)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSSS------------------------------------------CEEEEEECC
T ss_pred eEEEEECCCEEEEEcCCCCEEEEecccCc------------------------------------------ceeeEEcCC
Confidence 99999999899999999999999998542 112234468
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--CCCcEEEEeCcchh
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--ADTKIKVWKKLRAA 287 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~ 287 (450)
.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+. .|...|.+++|+|.+..++++++ .|+.|++||+++++
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999888887 78999999999997777888876 79999999998765
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEE--eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS--GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.+..+. +...|.+++|+|++++|++ |+.||.|++||+.+++.. ....+.+|...|.++
T Consensus 296 --------~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-----------~~~~~~~h~~~v~~~ 355 (401)
T 4aez_A 296 --------RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-----------KQVDIPAHDTRVLYS 355 (401)
T ss_dssp --------EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-----------EEEEEECCSSCCCEE
T ss_pred --------EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-----------eEEEecCCCCCEEEE
Confidence 344443 5678999999999999999 558999999999976543 334567899999999
Q ss_pred EEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 366 AVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 366 ~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
+|++ .+|++++.||.|++||+.++
T Consensus 356 ~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 356 ALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EECTTSSEEEEECTTSEEEEEECCC-
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9984 49999999999999999875
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=275.92 Aligned_cols=264 Identities=24% Similarity=0.385 Sum_probs=220.0
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
......+...+++++.++. +|...|++++|++++|++|+.||.|++||+.+++.... +.+|...|.
T Consensus 152 dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~ 217 (435)
T 1p22_A 152 DNTIKIWDKNTLECKRILT--GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT------------LIHHCEAVL 217 (435)
T ss_dssp SSCEEEEESSSCCEEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE------------ECCCCSCEE
T ss_pred CCeEEEEeCCCCeEEEEEc--CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEE------------EcCCCCcEE
Confidence 3445566667788888888 99999999999999999999999999999999886655 678999999
Q ss_pred EEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 132 SLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 132 ~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+++|+++.+++|+.||.|++||+.++.... ....+.+|..
T Consensus 218 ~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------------------------------~~~~~~~~~~ 257 (435)
T 1p22_A 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDIT----------------------------------------LRRVLVGHRA 257 (435)
T ss_dssp EEECCTTEEEEEETTSCEEEEECSSSSCCE----------------------------------------EEEEECCCSS
T ss_pred EEEEcCCEEEEeeCCCcEEEEeCCCCCCce----------------------------------------eeeEecCCCC
Confidence 999999999999999999999998763210 0123346889
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.|.+++| +++++++|+.||.|++||+++++.+..+. .|...|.++.+. +.++++|+.||.|++||+++++
T Consensus 258 ~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~---- 327 (435)
T 1p22_A 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA---- 327 (435)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCC----
T ss_pred cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCC----
Confidence 9999999 68899999999999999999999999988 899999999995 4599999999999999998766
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCe
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL 371 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 371 (450)
.+..+.+|...|.+++| ++++|++|+.||.|++||+.+++... ..........+.+|...|++++|++++
T Consensus 328 ----~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~ 397 (435)
T 1p22_A 328 ----CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR----APAGTLCLRTLVEHSGRVFRLQFDEFQ 397 (435)
T ss_dssp ----EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT----SCTTTTEEEEECCCSSCCCCEEECSSC
T ss_pred ----EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc----ccccchheeeccCCCCCeEEEEeCCCE
Confidence 56677789999999999 78899999999999999997654110 000111335678899999999999999
Q ss_pred EEEEeCCCeEEEeeCCCC
Q 041325 372 LFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~ 389 (450)
|++|+.||.|++||+.+.
T Consensus 398 l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCSSSEEEEEC----
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999999864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=267.75 Aligned_cols=259 Identities=21% Similarity=0.234 Sum_probs=207.4
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--- 138 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--- 138 (450)
+++++++ +|...|++++| ++++||+|+.||.|+|||+........ ..+.+|...|.+++|+++
T Consensus 2 ~~~~~~~--~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 2 SMVVIAN--AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI----------DTLTGHEGPVWRVDWAHPKFG 69 (379)
T ss_dssp ---CCEE--ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE----------EEECCCSSCEEEEEECCGGGC
T ss_pred CccEEec--CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee----------eEecCCCCcEEEEEeCCCCCC
Confidence 4667778 99999999999 799999999999999999874332111 236789999999999843
Q ss_pred -eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 139 -KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 139 -~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
.|++++.||.|++||+.++.. .....+..|...|.+++
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~ 108 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRW-----------------------------------------SQIAVHAVHSASVNSVQ 108 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEE-----------------------------------------EEEEEECCCSSCEEEEE
T ss_pred CEEEEeccCCEEEEEEcCCCce-----------------------------------------eEeeeecCCCcceEEEE
Confidence 499999999999999988731 01122335888999999
Q ss_pred EccC--CCEEEEEeCCCcEEEEecCCCeE--EEEeecccccceEEEEEeec------------CCcEEEEEcCCCcEEEE
Q 041325 218 LSSD--GSLLYSTSWDRTFKIWRTSDFRC--LESVKNAHDDAINAIVVSKS------------NDGFVYTGSADTKIKVW 281 (450)
Q Consensus 218 ~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~i~vw 281 (450)
|+|+ +++|++++.|+.|++||+.++.. ...+. .|...|.+++|+|. +..++++++.||.|++|
T Consensus 109 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 187 (379)
T 3jrp_A 109 WAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187 (379)
T ss_dssp ECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEE
T ss_pred eCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEE
Confidence 9998 99999999999999999988732 33344 78899999999985 35689999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCC---CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD---GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|++.+. ........+.+|...|.+++|+|+ +++|++++.||.|++||+++++.. ..........|
T Consensus 188 d~~~~~----~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~ 255 (379)
T 3jrp_A 188 KYNSDA----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKF 255 (379)
T ss_dssp EEETTT----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCC
T ss_pred EecCCC----cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc--------ceeeeeccccC
Confidence 997655 223345566789999999999999 899999999999999999976411 01122344558
Q ss_pred ccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 359 TKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 359 ~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
...|++++|+++ +|++++.||.|++|++..
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 899999999854 999999999999999884
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=268.87 Aligned_cols=290 Identities=15% Similarity=0.251 Sum_probs=219.8
Q ss_pred cceEEEEEeCCE---EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC-Ce--EEEEeCCCeE
Q 041325 76 SYIPSLAIAGKL---LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG-DK--LFSAHQDHKI 149 (450)
Q Consensus 76 ~~v~~~~~d~~~---l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~dg~i 149 (450)
.....++++.++ +++|+.||.|+||++........ ....+.+|.+.|.+++|++ +. |++|+.||+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v 106 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK--------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTV 106 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT--------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC--------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeE
Confidence 344557775544 34578899999999865431100 1112568999999999998 44 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEE
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYST 228 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 228 (450)
++||+.++.... . .......+.+|...|.+++|+|++ ++|+++
T Consensus 107 ~vw~~~~~~~~~----------------~--------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 107 MVWEIPDGGLVL----------------P--------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp EEEECCTTCCSS----------------C--------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred EEEEccCCCCcc----------------c--------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence 999998762100 0 001233456799999999999998 699999
Q ss_pred eCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH-hhcccc
Q 041325 229 SWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL-EKHKSA 306 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~ 306 (450)
+.||.|++||+.+++.+..+. ..|...|.+++|+|+ ..+|++++.||.|++||+++++ .+..+ ..|...
T Consensus 151 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~ 221 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGT--------VVAEKDRPHEGT 221 (402)
T ss_dssp ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTE--------EEEEEECSSCSS
T ss_pred cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCc--------eeeeeccCCCCC
Confidence 999999999999999998883 379999999999984 4589999999999999998765 44454 456655
Q ss_pred -eEEEEEcCCCCEEEEe---eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE-EEeCCC
Q 041325 307 -VTALALSTDGTVLYSG---ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF-SGSSDN 379 (450)
Q Consensus 307 -i~~l~~~~~~~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-s~~~dg 379 (450)
+.+++|+|++++|++| +.|+.|++||+++++.. .......|...+.+++|+++ +|+ +|+.||
T Consensus 222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-----------LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS 290 (402)
T ss_dssp SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-----------SEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-----------ceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence 8999999999999999 78999999999976531 11122346678999999855 664 666899
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|++||+.++. .....+..+. |..+|.+++|+|++. ++++ .|+.+++|++
T Consensus 291 ~i~i~d~~~~~----~~~~~l~~~~-~~~~v~~~~~sp~~~-------------~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 291 SIRYFEITSEA----PFLHYLSMFS-SKESQRGMGYMPKRG-------------LEVN--KCEIARFYKL 340 (402)
T ss_dssp CEEEEEECSST----TCEEEEEEEC-CSSCCSEEEECCGGG-------------SCGG--GTEEEEEEEE
T ss_pred eEEEEEecCCC----cceEeecccc-cCCcccceEEecccc-------------ccee--cceeEEEEEc
Confidence 99999998741 1122333333 678999999999998 5654 4668999987
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=264.09 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=208.5
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|.+++|+++. |++|+.||.|++||+.....
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------------------------- 45 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------------------------- 45 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE----------------------------------------
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc----------------------------------------
Confidence 377999999999999876 99999999999999985421
Q ss_pred ecceeeeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecC-CcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSN-DGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 274 (450)
.....+.+|...|.+++|+++ +++|++++.||.|++||+.+++ .+..+. .|...|.+++|+|.. ..++++++.
T Consensus 46 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~ 123 (379)
T 3jrp_A 46 -KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASS 123 (379)
T ss_dssp -EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred -eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCCEEEEecC
Confidence 112234479999999999976 9999999999999999999987 555555 788999999999863 458999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-------------CCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-------------DGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
||.|++||++.... .....+..|...|.+++|+| ++++|++|+.||.|++||+++++..
T Consensus 124 d~~i~v~d~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-- 195 (379)
T 3jrp_A 124 DGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-- 195 (379)
T ss_dssp TSEEEEEECCTTSC------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--
T ss_pred CCcEEEEecCCCCc------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--
Confidence 99999999977531 12234557889999999999 6999999999999999999876422
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
......+.+|...|.+++|++ ++|++++.||.|++||+..+.. .....+.....|...|++++|+
T Consensus 196 -------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 196 -------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---PWKKTLLKEEKFPDVLWRASWS 265 (379)
T ss_dssp -------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---CCEEEESSSSCCSSCEEEEEEC
T ss_pred -------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---cceeeeeccccCCCcEEEEEEc
Confidence 234456788999999999984 4899999999999999987411 0012222334588999999999
Q ss_pred ecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++. +|++++.||.|++|+++
T Consensus 266 ~~g~-------------~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 266 LSGN-------------VLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSC-------------CEEEEESSSSEEEEEEE
T ss_pred CCCC-------------EEEEecCCCcEEEEeCC
Confidence 9999 89999999999999973
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=270.49 Aligned_cols=295 Identities=11% Similarity=0.124 Sum_probs=211.5
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccc--eeeeEEeecCCCcceEEEEE--eCCE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEH--QCSATLKVKGNSSYIPSLAI--AGKL 87 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~h~~~v~~~~~--d~~~ 87 (450)
..+..+.|+|+...+.+...+..+.. +..... ++++++. +|...|++++| ++++
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~i--------------------w~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVEL--------------------YEQDGNGWKHARTFS--DHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCE--------------------EEEETTEEEECCCBC--CCSSCEEEEEECTTTCC
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEE--------------------EEccCCceEEEEEEe--cCCceEEEEEEeCCCCE
Confidence 46888899998888877766555543 222233 5667777 99999999999 7899
Q ss_pred EEEeeCCCcEEEecCCCCC-ceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEec
Q 041325 88 LYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
|++|+.||.|++||+.+++ ... ...+.+|...|.+++|+++. |++++.|+.|++||++.+...
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---- 135 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQ----------TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---- 135 (377)
T ss_dssp EEEEETTSSEEEC------CCCC----------EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C----
T ss_pred EEEEeCCCeEEEEEcCCCCceee----------eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc----
Confidence 9999999999999998876 111 12356899999999999876 999999999999999876210
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec-CCCceEEEEEccCCCEEEEEeCCCcEEEEecC---
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH-HVDTVSALALSSDGSLLYSTSWDRTFKIWRTS--- 240 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--- 240 (450)
.....+.. |...|.+++|+|++++|++++.|+.|++||+.
T Consensus 136 ------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 179 (377)
T 3dwl_C 136 ------------------------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRD 179 (377)
T ss_dssp ------------------------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred ------------------------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence 01112234 88899999999999999999999999999985
Q ss_pred ---------------CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 241 ---------------DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 241 ---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
.++++..+ .|...|.+++|+|++ .+|++++.||.|++||+++++ .....+..+..|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 180 VDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPE----QPPRALITVKLSQL 252 (377)
T ss_dssp CC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTT----SCEEECCCEECSSS
T ss_pred cCCCccccccccccchhhhhhcc--cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCC----CcceeeEeecCCCC
Confidence 34555555 688999999999854 489999999999999998776 11112667778999
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce--eeeCCCCCCce----------------------------------
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNY--IVDGDDDSGHM---------------------------------- 349 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~~---------------------------------- 349 (450)
.|.+++|+|++++|++|+.++.+ +|+...... ...+.......
T Consensus 253 ~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 331 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKG 331 (377)
T ss_dssp CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------------
T ss_pred ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcc
Confidence 99999999999999998866655 776653221 11111000000
Q ss_pred ---eeeccccCCccceEEEEEeCC------eEEEEeCCCeEEEeeC
Q 041325 350 ---VLKGALRGHTKAILCLAVVSN------LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 350 ---~~~~~~~~~~~~v~~~~~~~~------~l~s~~~dg~v~iwd~ 386 (450)
........|...|+++.+.+. .|+||+.||.|++||+
T Consensus 332 ~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 332 SSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 011122349999999997532 6999999999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=281.66 Aligned_cols=294 Identities=21% Similarity=0.330 Sum_probs=221.2
Q ss_pred ccCCCccCCCC-CccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 13 RNKEPKFQPSS-NHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 13 ~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
.+..+.|+|+. ..+.+.+.+..++.-... ........+.+.+. +|...|++++| ++++|+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~---------------~~~~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLT---------------KDDKAYGVAQRRLT--GHSHFVEDVVLSSDGQFAL 446 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECC---------------CSTTCSCEEEEEEE--CCSSCEEEEEECTTSSEEE
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEcc---------------CCCcccccccceec--CCCCcEEEEEECCCCCEEE
Confidence 45667788765 455667666666541110 00112234566777 99999999999 799999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCc
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGK 167 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 167 (450)
+|+.||+|+|||+.++..... +.+|...|.+++|+++. |++++.|++|++||.......
T Consensus 447 sgs~Dg~v~vwd~~~~~~~~~------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~------- 507 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGVSTRR------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY------- 507 (694)
T ss_dssp EEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-------
T ss_pred EEeCCCcEEEEECCCCcceeE------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-------
Confidence 999999999999998876554 77999999999999876 999999999999998654211
Q ss_pred ccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCCCeEE
Q 041325 168 LKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
.... ...+|...|.+++|+|++ ..+++++.|+.|++||+.+++..
T Consensus 508 ---------~~~~------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 508 ---------TISE------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp ---------EECS------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred ---------eecc------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 0000 012588899999999976 68999999999999999999988
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
..+. .|...|.+++|+|+ ..+|++|+.||.|++||+++++ .+..+. +...|.+++|+|++.+|++++ +
T Consensus 555 ~~~~-~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~--------~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~ 622 (694)
T 3dm0_A 555 STLA-GHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGK--------KLYSLE-ANSVIHALCFSPNRYWLCAAT-E 622 (694)
T ss_dssp EEEC-CCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTE--------EEECCB-CSSCEEEEEECSSSSEEEEEE-T
T ss_pred EEEc-CCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc--------eEEEec-CCCcEEEEEEcCCCcEEEEEc-C
Confidence 8887 89999999999985 4589999999999999998766 333333 456799999999998887765 5
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeee------ccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCC
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLK------GALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~ 387 (450)
+.|++||+++++.+..+.......... .....+...+++++|++ ++|++|+.||.|++|++.
T Consensus 623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 669999999988765443322111000 01112233478899984 599999999999999986
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=277.65 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=200.3
Q ss_pred eEEeecCCCcceEEEEE--e------CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 67 ATLKVKGNSSYIPSLAI--A------GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d------~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.++. +|.+.|.+++| + +.+||+|+.||+|+|||+..+........ ........+.+|...|++++|+++
T Consensus 201 ~~l~--~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~-~~~~p~~~l~~h~~~v~sv~~s~~ 277 (524)
T 2j04_B 201 QTIV--HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK-MCEKPSLTLSLADSLITTFDFLSP 277 (524)
T ss_dssp EEEE--ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE-CCCSCSEEECCTTTCEEEEEESSS
T ss_pred EEEE--ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce-eecCceEEEEcCCCCEEEEEecCC
Confidence 3455 88999999999 3 46999999999999999987653210000 011123357789999999999865
Q ss_pred e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE-
Q 041325 139 K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL- 216 (450)
Q Consensus 139 ~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 216 (450)
. |++|+.||+|++||++++.. ....+.+|.+.|.++
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~------------------------------------------~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEV------------------------------------------PSFYDQVHDSYILSVS 315 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSS------------------------------------------CSEEEECSSSCEEEEE
T ss_pred CeEEEEeCCCEEEEEECCCCCC------------------------------------------ceEEeecccccEEEEE
Confidence 5 99999999999999986511 112345799999999
Q ss_pred -EEccCC-CEEEEEeCCCcEEEEecCCCeEEEEeecccc--cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 217 -ALSSDG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHD--DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 217 -~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
+|++++ .+|++|+.|++|+|||+++++++..+. .|. ..|.+++|+|+.. .+++++.|+.|++||++++.
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~----- 388 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAF----- 388 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTT-----
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccc-----
Confidence 578887 899999999999999999887766665 343 3588999998544 78999999999999997765
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc--------------eeeeC--CCCCC---------
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN--------------YIVDG--DDDSG--------- 347 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~--------------~~~~~--~~~~~--------- 347 (450)
....+.+|.+.|++++|+|++++|++|+.||+|++||+..+. .+... ..+..
T Consensus 389 ---~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~ 465 (524)
T 2j04_B 389 ---AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYE 465 (524)
T ss_dssp ---CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCC
T ss_pred ---cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCce
Confidence 445667899999999999999999999999999999975321 11111 11110
Q ss_pred ------ceeeeccccCCccceEEEEEeCC-----eEEEEeCCCeEEEeeCCC
Q 041325 348 ------HMVLKGALRGHTKAILCLAVVSN-----LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 348 ------~~~~~~~~~~~~~~v~~~~~~~~-----~l~s~~~dg~v~iwd~~~ 388 (450)
.......+.+|...|.+++|+++ .+++|+.||.|+||++.-
T Consensus 466 ~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 466 VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 01233456789999999999976 899999999999999874
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=262.51 Aligned_cols=269 Identities=14% Similarity=0.254 Sum_probs=213.3
Q ss_pred EEecCCCceEEEEEeCC----e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCce
Q 041325 122 VATGNGDAVKSLVVLGD----K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNY 195 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~----~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
...+|.++|.+++|+|+ . +++++.++.|++||+.++.... .+...
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~-------------~~~~~---------------- 63 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR-------------LLQSY---------------- 63 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE-------------EEEEE----------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE-------------eeeec----------------
Confidence 35589999999999973 2 7777888899999998763211 00000
Q ss_pred EEEeecceeeeecCCCceEEEEEccC----CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEE
Q 041325 196 VQVRRHKKCTWVHHVDTVSALALSSD----GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
....|...|.+++|+|+ +++|++|+.||.|++||+.+++.+..+. .|...|.+++|+|.+..+|++
T Consensus 64 ---------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s 133 (366)
T 3k26_A 64 ---------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLS 133 (366)
T ss_dssp ---------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEE
T ss_pred ---------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEE
Confidence 01137788999999998 6799999999999999999999998888 899999999999855669999
Q ss_pred EcCCCcEEEEeCcchhhhccccchhhhhH---hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCC----
Q 041325 272 GSADTKIKVWKKLRAALQVNKKHSLVQTL---EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDD---- 344 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---- 344 (450)
++.||.|++||+++++ ....+ ..|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus 134 ~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 134 VSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp EETTSCEEEEETTTTE--------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred EeCCCeEEEEEeecCe--------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 9999999999998765 33333 67899999999999999999999999999999997654311100
Q ss_pred -----------CCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCcc------ccCCCceeEEEecCCC
Q 041325 345 -----------DSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT------DHQKGYSCLAVLEGHR 407 (450)
Q Consensus 345 -----------~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~h~ 407 (450)
.............|...|.+++|+++++++++.||.|++||+.+... ........+..+.+|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 285 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence 00000111233458999999999999999999999999999986532 1112235678889999
Q ss_pred cceEEEEEEec--CCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 408 RPVKCLTAVVD--SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 408 ~~v~~l~~~~~--~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..|++++|+|+ +. +|++|+.||.|++||++
T Consensus 286 ~~v~~~~~s~~~~~~-------------~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 286 CDIWYMRFSMDFWQK-------------MLALGNQVGKLYVWDLE 317 (366)
T ss_dssp CCSSCCCCEECTTSS-------------EEEEECTTSCEEEEECC
T ss_pred CcEEEEEEcCCCCCc-------------EEEEEecCCcEEEEECC
Confidence 99999999999 88 99999999999999974
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=256.74 Aligned_cols=299 Identities=14% Similarity=0.131 Sum_probs=210.8
Q ss_pred cCCCccCCCCCcccccccccc-------CCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEEeCC
Q 041325 14 NKEPKFQPSSNHLQSELSNAS-------LSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGK 86 (450)
Q Consensus 14 ~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~ 86 (450)
+.++.|+|++..+.++....+ ++.-.. .. ..............+.+.+|...|.+++++++
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~-------~~-----~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~ 84 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRV-------DP-----TKDTEKEQFHILSEFALEDNDDSPTAIDASKG 84 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEE-------CT-----TSSSHHHHEEEEEEEECCTTSCCCCEEEEETT
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEE-------cC-----CCcceeeeeeeeeEEEccCCCCceEEEEeCCC
Confidence 457889999998888643222 221000 00 00011112233444555699999999999999
Q ss_pred EEEEee-----------CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE--EEeCCCeEEE
Q 041325 87 LLYGGS-----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF--SAHQDHKIRV 151 (450)
Q Consensus 87 ~l~tgs-----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~--s~~~dg~i~i 151 (450)
.+++|. .|+.+|+|++.............. ......+...+.+++|+||+ ++ +++.|++|++
T Consensus 85 ~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 85 IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVD---FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEEC---SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeec---eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 988875 467788888765442211100000 00123455678999999987 44 5557999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
||+++.+. +..+ .|.+.|.+++|+|+|+++++++.+
T Consensus 162 wd~~~~~~----------------~~~~----------------------------~~~~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 162 IDPSDLTE----------------KFEI----------------------------ETRGEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp EETTTTEE----------------EEEE----------------------------ECSSCCCEEEECTTSSEEEEECSS
T ss_pred eECCCCcE----------------EEEe----------------------------CCCCceEEEEEccCCceEEeccce
Confidence 99998732 1111 377789999999999999999854
Q ss_pred CcEEEEecCCCeEEE-EeecccccceEEEEEeecCCcEEEEEcCCC----cEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 232 RTFKIWRTSDFRCLE-SVKNAHDDAINAIVVSKSNDGFVYTGSADT----KIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 232 g~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
.+++|+..+++.+. .....|...|.+++|+|+ +..+++++.|+ .+++|++.... ........+.+|...
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~~s~d~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 198 -SLEVISTVTGSCIARKTDFDKNWSLSKINFIAD-DTVLIAASLKKGKGIVLTKISIKSGN----TSVLRSKQVTNRFKG 271 (365)
T ss_dssp -CEEEEETTTCCEEEEECCCCTTEEEEEEEEEET-TEEEEEEEESSSCCEEEEEEEEETTE----EEEEEEEEEESSCSC
T ss_pred -eEEEEEeccCcceeeeecCCCCCCEEEEEEcCC-CCEEEEEecCCcceeEEeecccccce----ecceeeeeecCCCCC
Confidence 56666666666554 333468889999999994 44788887776 68888876544 112223456678899
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIW 384 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iw 384 (450)
|++++|+|||++|++|+.|+.|+|||+++++++. ..+.+|...|++++|+++ +|++||.|++|+||
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~------------~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK------------IFKQAHSFAITEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE------------EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE------------EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999999999999999987652 235789999999999955 99999999999999
Q ss_pred eCCCC
Q 041325 385 RRSSS 389 (450)
Q Consensus 385 d~~~~ 389 (450)
|+...
T Consensus 340 ~ip~~ 344 (365)
T 4h5i_A 340 KLPLN 344 (365)
T ss_dssp ECCTT
T ss_pred EcCCC
Confidence 99754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=263.18 Aligned_cols=247 Identities=13% Similarity=0.193 Sum_probs=206.2
Q ss_pred EEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 122 VATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+.+|.+.|++++|+++.|++|+.||.|++||+....... . ..
T Consensus 11 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~----------------~---------------------~~ 53 (397)
T 1sq9_A 11 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNEN----------------P---------------------KD 53 (397)
T ss_dssp ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCC----------------G---------------------GG
T ss_pred hhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccccc----------------C---------------------CC
Confidence 3568999999999999889999999999999998873100 0 01
Q ss_pred ceeeeecCCCceEEEEEccC----C---CEEEEEeCCCcEEEEecCCCeE-----EEEeeccc-----ccceEEEEEe--
Q 041325 202 KKCTWVHHVDTVSALALSSD----G---SLLYSTSWDRTFKIWRTSDFRC-----LESVKNAH-----DDAINAIVVS-- 262 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~-- 262 (450)
....+.+|...|.+++|+|+ + ++|++++.||.|++||+.+++. +..+. .| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeec
Confidence 22344579999999999999 9 9999999999999999998776 66666 56 5899999999
Q ss_pred --ecCCcE-EEEEcCCCcEEEEeCcc------hhhhccccchhhh-----hH-------hhcccceEEEEEcCCCCEEEE
Q 041325 263 --KSNDGF-VYTGSADTKIKVWKKLR------AALQVNKKHSLVQ-----TL-------EKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 263 --~~~~~~-l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~-----~~-------~~~~~~i~~l~~~~~~~~l~~ 321 (450)
|++. + |++++.||.|++||++. ++ .+. .+ ..|...|.+++|+|++ +|++
T Consensus 133 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~ 202 (397)
T 1sq9_A 133 NDRLLS-HRLVATDVKGTTYIWKFHPFADESNSL--------TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT 202 (397)
T ss_dssp C----C-EEEEEEETTSCEEEEEEESSSSHHHHT--------TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE
T ss_pred cCCCCc-eEEEEEeCCCcEEEEeCCccccccccc--------eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE
Confidence 8554 7 99999999999999987 44 222 44 3478899999999999 9999
Q ss_pred eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC---C---ccceEEEEEeC--CeEEEEeCC---CeEEEeeCCCCc
Q 041325 322 GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG---H---TKAILCLAVVS--NLLFSGSSD---NTIRIWRRSSSV 390 (450)
Q Consensus 322 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~--~~l~s~~~d---g~v~iwd~~~~~ 390 (450)
++.||.|++||+++++.+ ..+.. | ...|.+++|++ ++|++++.| |.|++||+.++
T Consensus 203 ~~~dg~i~i~d~~~~~~~-------------~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~- 268 (397)
T 1sq9_A 203 GFNNGTVQISELSTLRPL-------------YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG- 268 (397)
T ss_dssp ECTTSEEEEEETTTTEEE-------------EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-
T ss_pred EeCCCcEEEEECCCCcee-------------EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-
Confidence 999999999999987655 44555 8 89999999984 599999999 99999999874
Q ss_pred cccCCCceeEEEecC-------------CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 391 TDHQKGYSCLAVLEG-------------HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.+..+.+ |...|.+++|+|++. +|++++.||.|++||++
T Consensus 269 -------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 269 -------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-------------TLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp -------CEEEEECBC--------CCBSBSSCEEEEEECSSSS-------------EEEEEETTSEEEEEETT
T ss_pred -------cccceeccCcccccccccccccCCcEEEEEECCCCC-------------EEEEEeCCCeEEEEEcC
Confidence 66777887 999999999999999 99999999999999974
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=252.45 Aligned_cols=290 Identities=19% Similarity=0.346 Sum_probs=224.0
Q ss_pred ccCCCccCCCC-CccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 13 RNKEPKFQPSS-NHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 13 ~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
.+..+.|+|+. ..+.+.+.+..++.= ...........+.++++ +|...|++++| |+++|+
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vW---------------d~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMW---------------KLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEE---------------EECCSSSCSEEEEEEEC--CCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEE---------------ECCCCCcccceeeEEEe--CCCCCEEEEEECCCCCEEE
Confidence 56778888874 566677777766541 11111223345677787 99999999999 799999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCc
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGK 167 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 167 (450)
+|+.||.|++|+......... ...+...+..+.+.++. |++++.|+.+++||+......
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~------- 163 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRR------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY------- 163 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-------
T ss_pred EEcccccceEEeecccceeee------------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE-------
Confidence 999999999999988775554 55677788888888665 999999999999998766211
Q ss_pred ccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCCeEE
Q 041325 168 LKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
.....+|...+.+++|+++ ..++++++.|+.|++||+.+++.+
T Consensus 164 -----------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 164 -----------------------------------TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp -----------------------------------EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred -----------------------------------EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 1112358889999999885 457889999999999999999999
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
..+. .|...|.+++|+|+ ..+|++|+.||.|++||+++.+ .+..+. +...+.+++|+|++.+ ++++.|
T Consensus 209 ~~~~-~h~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~--------~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d 276 (340)
T 4aow_A 209 TNHI-GHTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGK--------HLYTLD-GGDIINALCFSPNRYW-LCAATG 276 (340)
T ss_dssp EEEC-CCSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTE--------EEEEEE-CSSCEEEEEECSSSSE-EEEEET
T ss_pred eEec-CCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCc--------eeeeec-CCceEEeeecCCCCce-eeccCC
Confidence 8887 89999999999984 4589999999999999997765 344443 4568999999998765 556679
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCC
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~ 389 (450)
+.|++||++++..+..+.... ......+|...|++++|+++ +|++|+.||.|+|||+++|
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~----~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEV----ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-----------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CEEEEEECCCCeEEEeccccc----eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 999999999887664433221 12345678999999999854 9999999999999999876
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=256.40 Aligned_cols=293 Identities=10% Similarity=0.110 Sum_probs=200.3
Q ss_pred CccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 60 ASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 60 ~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
..+.+++++++ +|...|++++| ||++|++|+.|| ++||++++.+.... .+...+..+++.+
T Consensus 6 ~~~~~~~~~~~--~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~--------------~~~~~~~~~~~~~ 68 (355)
T 3vu4_A 6 MITRNPIVPEN--HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS--------------QEMRHLSKVRMLH 68 (355)
T ss_dssp ---------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE--------------EECSCCCEEEECT
T ss_pred ccccCCccccc--cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee--------------eecCCeEEEEEcC
Confidence 34445666666 99999999999 799999998875 78999876654332 1112466666654
Q ss_pred --CeE-EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 138 --DKL-FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 138 --~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+.+ ++++.|++|++||+.+++. +..+ .+...|.
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~----------------~~~~----------------------------~~~~~v~ 104 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQD----------------VSRI----------------------------KVDAPVK 104 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEE----------------EEEE----------------------------ECSSCEE
T ss_pred CCCEEEEEECCccEEEEEECCCCcE----------------EEEE----------------------------ECCCceE
Confidence 444 6788899999999998832 2221 2556899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEE--EcCCCcEEEEeCcchhhhcc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYT--GSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~ 291 (450)
+++++++. ++++. |+.|++||+.++ +.+..+.. ....+++++ .+++. |+.||.|++||+.++.....
T Consensus 105 ~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~ 174 (355)
T 3vu4_A 105 DLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR----FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATT 174 (355)
T ss_dssp EEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE----EEEEEEEET---TEEEEEESSCTTCEEEEECCC------
T ss_pred EEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc----CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccc
Confidence 99998764 44443 789999999988 76666652 444455664 35554 68999999999976431100
Q ss_pred cc-------chh-hhhHhhcccceEEEEEcCCCCEEEEeeCCCc-EEEEEcCCCceeeeCCCCCCceeeecccc-C-Ccc
Q 041325 292 KK-------HSL-VQTLEKHKSAVTALALSTDGTVLYSGACDRS-ILVWERDQGNYIVDGDDDSGHMVLKGALR-G-HTK 360 (450)
Q Consensus 292 ~~-------~~~-~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 360 (450)
.. ..+ +..+.+|...|++++|+|+|++|++|+.||+ |++||+++++.+ ..+. + |..
T Consensus 175 ~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-------------~~~~~g~h~~ 241 (355)
T 3vu4_A 175 QDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-------------REFRRGLDRA 241 (355)
T ss_dssp ------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE-------------EEEECTTCCS
T ss_pred ccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-------------EEEEcCCCCC
Confidence 00 011 5667889999999999999999999999998 999999988765 3444 4 899
Q ss_pred ceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCc---------------eeEEEecCCCcceEEEEEEecCCCCC
Q 041325 361 AILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGY---------------SCLAVLEGHRRPVKCLTAVVDSDYSN 423 (450)
Q Consensus 361 ~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~~~~~h~~~v~~l~~~~~~~~~~ 423 (450)
.|.+++|++ ++|++++.|+.|++||++.+........ ........+..+...++|++++.
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~--- 318 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS--- 318 (355)
T ss_dssp CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE---
T ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC---
Confidence 999999985 4999999999999999986422111000 00001111222346688998888
Q ss_pred CCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 424 RNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 424 ~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|++++.||.+++|++
T Consensus 319 ----------~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 319 ----------LVVVWPHTRMIETFKV 334 (355)
T ss_dssp ----------EEEEETTTTEEEEEEE
T ss_pred ----------EEEEEeCCCeEEEEEE
Confidence 9999999999999987
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=256.25 Aligned_cols=260 Identities=13% Similarity=0.117 Sum_probs=206.0
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+..|.++|.+++|+++. |++++.|+.|++||+.+++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 45689999999999886 88999999999999987721
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.....+.+|...|.+++|+|++++|++++.||.|++||+.+++....+. ..|...|.+++|+|+ ..++++++.||.|+
T Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVIS 121 (372)
T ss_dssp EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEE
T ss_pred EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEE
Confidence 0122344689999999999999999999999999999999887554442 368889999999985 45899999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC-----CCCCceeeecc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD-----DDSGHMVLKGA 354 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~ 354 (450)
+||++.... ..........|...|.+++|+|++++|++++.||.|++||++......... ...........
T Consensus 122 i~d~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
T 1k8k_C 122 ICYFEQEND----WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 197 (372)
T ss_dssp EEEEETTTT----EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred EEEecCCCc----ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe
Confidence 999976541 111122235678999999999999999999999999999975321100000 00001123356
Q ss_pred ccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 355 LRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
+..|...|.+++|++ ++|++++.||.|++||++++ +++..+..|..+|.+++|+|++.
T Consensus 198 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~------------ 257 (372)
T 1k8k_C 198 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK--------MAVATLASETLPLLAVTFITESS------------ 257 (372)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT--------TEEEEEECSSCCEEEEEEEETTE------------
T ss_pred cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------ceeEEEccCCCCeEEEEEecCCC------------
Confidence 668999999999974 49999999999999999874 67888889999999999999998
Q ss_pred EEEEEcccCCcEEEEEeC
Q 041325 433 FLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++| .|+.|++|+++
T Consensus 258 -~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 258 -LVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp -EEEEE-TTSSCEEEEEE
T ss_pred -EEEEE-eCCeEEEEEcc
Confidence 78777 89999999973
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-34 Score=254.27 Aligned_cols=271 Identities=8% Similarity=0.011 Sum_probs=198.5
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
++++|++|+.||.|++||+.+++...... ...|.++.++|+ +++++.|++|++|+.......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--------------~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~--- 108 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--------------TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITI--- 108 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--------------EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEE---
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--------------cCCceeeeeCCc-eEEecCCCeEEEEEccCceEE---
Confidence 78999999999999999999888665522 346777888888 999999999999998754111
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 241 (450)
...... . .......+|.+.|.+++|+| +++++++++.||.|++||+++
T Consensus 109 -------------~~~~~~--~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 109 -------------LDSKTN--K---------------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp -------------EETTTC--C---------------EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred -------------eecCCc--c---------------eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 000000 0 00001124678899999999 999999999999999999999
Q ss_pred CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh-hhHhh-cccceEEEEEcCCCCEE
Q 041325 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV-QTLEK-HKSAVTALALSTDGTVL 319 (450)
Q Consensus 242 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~-~~~~i~~l~~~~~~~~l 319 (450)
++.+......+...+.+++|+|+ ..++++|+.||.|++||+++++ .. ..+.. |...|++++|+|++++|
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~fs~~g~~l 229 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPD--------QASSRFPVDEEAKIKEVKFADNGYWM 229 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTT--------SCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred CcEEEEEecCCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCC--------CCccEEeccCCCCEEEEEEeCCCCEE
Confidence 99877665456678999999984 4589999999999999998776 33 44555 89999999999999999
Q ss_pred EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce--EEEEEe--CCeEEEEeC-CCeEEEeeCCCCccccC
Q 041325 320 YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI--LCLAVV--SNLLFSGSS-DNTIRIWRRSSSVTDHQ 394 (450)
Q Consensus 320 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~--~~~l~s~~~-dg~v~iwd~~~~~~~~~ 394 (450)
++++ |+.|++||+++++.+..+ ..+..|...+ .+++|+ +++|++++. |+.|++|++... .
T Consensus 230 ~s~~-~~~v~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~----~ 294 (343)
T 3lrv_A 230 VVEC-DQTVVCFDLRKDVGTLAY----------PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK----T 294 (343)
T ss_dssp EEEE-SSBEEEEETTSSTTCBSS----------CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT----T
T ss_pred EEEe-CCeEEEEEcCCCCcceee----------cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc----c
Confidence 9999 559999999987644211 1111233333 368887 459999888 999999999754 2
Q ss_pred CCceeEEEecCCCcceEEEEEEe---cCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 395 KGYSCLAVLEGHRRPVKCLTAVV---DSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 395 ~~~~~~~~~~~h~~~v~~l~~~~---~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+.+.. .++..+.|.+ +.. .+++++.||.+.++
T Consensus 295 ~~~~~--------~~~~~~~~~~~~~~~~-------------~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 295 KNWTK--------DEESALCLQSDTADFT-------------DMDVVCGDGGIAAI 329 (343)
T ss_dssp CSEEE--------EEEEECCC----CCCC-------------EEEEEEETTEEEEE
T ss_pred cceEe--------cCceeEecCccccccc-------------eeEEEecCCceEEE
Confidence 22222 4566677776 555 67777777777765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=266.39 Aligned_cols=246 Identities=12% Similarity=0.228 Sum_probs=190.3
Q ss_pred ecCCCceEEEEEeC-Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 124 TGNGDAVKSLVVLG-DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 124 ~~h~~~v~~l~~~~-~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
.+|.+.|++++|++ +. |++|+.||+|++||+.+.... ...
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-------------~~~------------------------ 102 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-------------EVY------------------------ 102 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-------------CCC------------------------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-------------ccc------------------------
Confidence 68999999999999 65 999999999999998762100 000
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC---CCeEEEEee--------c-c--cccceEEEEEeec-C
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS---DFRCLESVK--------N-A--HDDAINAIVVSKS-N 265 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~--------~-~--~~~~v~~~~~~~~-~ 265 (450)
... ...+|...|.+++|+|++++|++++.||.|++||+. +++...... . . +...+.++.+... +
T Consensus 103 ~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 103 SSS-LTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp SCS-EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred cee-eeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 000 111488999999999999999999999999999995 444433322 0 1 4455666664321 3
Q ss_pred CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh--cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK--HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
..++++++.||.|++||+++++ .+..+.. |...|++++|+|++++|++|+.||.|++||+++++.+
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---- 249 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI---- 249 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE----
T ss_pred CCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE----
Confidence 4589999999999999997766 5555655 7899999999999999999999999999999987655
Q ss_pred CCCCceeeecccc-CCccceEEEEEeCC------eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-----------
Q 041325 344 DDSGHMVLKGALR-GHTKAILCLAVVSN------LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG----------- 405 (450)
Q Consensus 344 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----------- 405 (450)
..+. .|...|.++++.+. +|++|+.||.|++||++++ +++..+.+
T Consensus 250 ---------~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~ 312 (437)
T 3gre_A 250 ---------RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG--------HCQYAFINSDEQPSMEHFL 312 (437)
T ss_dssp ---------EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT--------EEEEEEESSSSCCCGGGGS
T ss_pred ---------EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC--------cEEEEEEcCCCCCccceec
Confidence 3333 67789999977643 8999999999999999875 34444433
Q ss_pred ---------------CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 406 ---------------HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 406 ---------------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|...|++++|+ ++. +|++|+.||.|++||++
T Consensus 313 ~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-------------~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 313 PIEKGLEELNFCGIRSLNALSTISVS-NDK-------------ILLTDEATSSIVMFSLN 358 (437)
T ss_dssp CBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-------------EEEEEGGGTEEEEEETT
T ss_pred ccccccccceecccccCCceEEEEEC-Cce-------------EEEecCCCCeEEEEECC
Confidence 66667788887 556 89999999999999974
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=253.82 Aligned_cols=286 Identities=16% Similarity=0.215 Sum_probs=228.8
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|+...+.+...+..+ ..+...+++++.++. +|...|++++| ++++|++
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i--------------------~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSA--------------------SVWYSLNGERLGTLD--GHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCE--------------------EEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEE--------------------EEEeCCCchhhhhhh--hcCCcEEEEEEcCCCCEEEE
Confidence 45566666666666655444333 334445567888888 99999999999 6999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC-----CeEEEEEcCCCceeEEe
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD-----HKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-----g~i~iw~~~~~~~~~~~ 163 (450)
++.||.|++||+.+++.... +. |...|.+++|+++. +++++.+ |.|++||+.........
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~------------~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVAT------------WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp EETTTEEEEEETTTCCEEEE------------EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred EeCCCeEEEEECCCCcEEEE------------ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999999999998886655 33 77899999999877 8888888 99999999876321000
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC--ceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD--TVSALALSSDGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (450)
. .........+..|.. .+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 -------------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 -------------T-------------------KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp -------------E-------------------EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred -------------c-------------------ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 0 001112223345655 899999999999999999999999999998
Q ss_pred -CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEE
Q 041325 242 -FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY 320 (450)
Q Consensus 242 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 320 (450)
++.+..+. .|...|.+++|+|+ ..+|++++.||.|++||+++++ ....+. +...+..++|+|++++++
T Consensus 207 ~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~l~ 275 (369)
T 3zwl_B 207 NYEYVDSID-LHEKSISDMQFSPD-LTYFITSSRDTNSFLVDVSTLQ--------VLKKYE-TDCPLNTAVITPLKEFII 275 (369)
T ss_dssp TTEEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCC--------EEEEEE-CSSCEEEEEECSSSSEEE
T ss_pred CcEeEEEEe-cCCCceeEEEECCC-CCEEEEecCCceEEEEECCCCc--------eeeeec-CCCCceeEEecCCCceEE
Confidence 67777777 78999999999984 4589999999999999997765 333443 678899999999999999
Q ss_pred EeeCCC--------------cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEe
Q 041325 321 SGACDR--------------SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIW 384 (450)
Q Consensus 321 ~g~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iw 384 (450)
+++.++ .+++||..+++.+ ..+.+|...|++++|++ ++|++++.||.|++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 276 LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-------------GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp EEECCC-------------CEEEEEETTTCCEE-------------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EeecCCCceEEEEecCCCcceeEEEecCCCcch-------------hheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 999988 8999999988755 56778999999999984 499999999999999
Q ss_pred eCCCC
Q 041325 385 RRSSS 389 (450)
Q Consensus 385 d~~~~ 389 (450)
+++.+
T Consensus 343 ~~~~~ 347 (369)
T 3zwl_B 343 HFEKS 347 (369)
T ss_dssp EECHH
T ss_pred ECccc
Confidence 99864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=248.44 Aligned_cols=266 Identities=22% Similarity=0.304 Sum_probs=221.7
Q ss_pred CCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe
Q 041325 47 LAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT 124 (450)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 124 (450)
++........++...++++++++++++|...|++++| ++++|++|+.||+|++||+++++.... +.
T Consensus 39 lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~------------~~ 106 (318)
T 4ggc_A 39 LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------MT 106 (318)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------------EE
T ss_pred EEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE------------ec
Confidence 4444455677788888999999998899999999999 799999999999999999999887665 67
Q ss_pred cCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 125 GNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
+|...+.++.+.+..+++++.++.+++|+...... ...
T Consensus 107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~------------------------------------------~~~ 144 (318)
T 4ggc_A 107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH------------------------------------------HVA 144 (318)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC------------------------------------------EEE
T ss_pred CccceEEEeecCCCEEEEEecCCceEeeecCCCce------------------------------------------eEE
Confidence 89999999999999999999999999999887631 122
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE---EeecccccceEEEEEeecCCcEE--EEEcCCCcEE
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE---SVKNAHDDAINAIVVSKSNDGFV--YTGSADTKIK 279 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~i~ 279 (450)
.+.+|...+..+.+.++++++++++.|+.|++||+.+++... .....+...|.++.+.+.....+ ++++.++.|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 344789999999999999999999999999999998765321 11225778899999998776654 5677899999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+||.+... .. ....+...+..+.|+|+++.+++++ .|+.|++||+++++.+ ..+.+
T Consensus 225 lwd~~~~~--------~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~-------------~~l~g 282 (318)
T 4ggc_A 225 IWNVCSGA--------CL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-------------AELKG 282 (318)
T ss_dssp EEETTTCC--------EE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-------------EEECC
T ss_pred EEeccccc--------cc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE-------------EEEcC
Confidence 99987654 22 2234667899999999999887754 7999999999998765 57789
Q ss_pred CccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 358 HTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 358 ~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
|...|++++|++ ++|++|+.||+|+|||+..
T Consensus 283 H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 283 HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999985 4999999999999999875
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=261.09 Aligned_cols=267 Identities=15% Similarity=0.259 Sum_probs=210.9
Q ss_pred eEEecCCCceEEEEEeCC-e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 121 VVATGNGDAVKSLVVLGD-K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~-~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
.....|.+.|++++|+++ . |++++.||.|++|++....... . ...
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~----------------~-~~~--------------- 169 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP----------------E-PSG--------------- 169 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC----------------C-TTC---------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc----------------C-ccc---------------
Confidence 346789999999999986 3 8999999999999997631100 0 000
Q ss_pred EeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeE-------EEEeecccccceEEEEEeecCCcEE
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRC-------LESVKNAHDDAINAIVVSKSNDGFV 269 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l 269 (450)
.......+.+|...|.+++|+|++. +|++|+.||.|++||+..+.. ...+. .|...|.+++|+|.+..++
T Consensus 170 -~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 170 -ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp -CCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEE
T ss_pred -cCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEE
Confidence 0122334557999999999999988 999999999999999987322 23344 7889999999999777799
Q ss_pred EEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 270 YTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 270 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
++++.||.|++||+++.. .......+..|...|++++|+|+++ +|++|+.||.|++||+++...
T Consensus 248 ~s~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---------- 312 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNN-----TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---------- 312 (430)
T ss_dssp EEEETTSEEEEEETTCSC-----SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------
T ss_pred EEEeCCCeEEEEECCCCC-----CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------
Confidence 999999999999998652 1124445567899999999999887 688999999999999997431
Q ss_pred eeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc------CCCceeEEEecCCCcceEEEEEEecC
Q 041325 349 MVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH------QKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
....+..|...|++++|+++ +|++++.||.|++||+....... ......+..+.+|...|++++|+|++
T Consensus 313 --~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 313 --KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390 (430)
T ss_dssp --CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS
T ss_pred --CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCC
Confidence 22566779999999999853 69999999999999998631110 01136778888999999999999998
Q ss_pred CCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+. +|++++.||.|+||++.
T Consensus 391 ~~------------~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 391 PW------------IICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TT------------EEEEEETTSEEEEEEEC
T ss_pred CC------------EEEEEECCCCEEEeEcc
Confidence 85 79999999999999974
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=248.13 Aligned_cols=275 Identities=19% Similarity=0.281 Sum_probs=223.0
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
..+..+.| |+...+.+...+..+.. +...+.+....+. +|...|.+++| ++++|+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~v--------------------w~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRL--------------------WSKDDQWLGTVVY--TGQGFLNSVCYDSEKELLL 75 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEE--------------------EEESSSEEEEEEE--ECSSCEEEEEEETTTTEEE
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEE--------------------EECCCCEEEEEee--cCCccEEEEEECCCCCEEE
Confidence 35566666 66666666555554433 3344557777787 89999999999 799999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCccc
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
+|+.||.|++|++....... ....+.+|...|.+++|.++.+++++.||.|++|| ...
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~----------- 133 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGED---------PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGS----------- 133 (313)
T ss_dssp EEETTSCEEEEETTCCTTSC---------C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTE-----------
T ss_pred EecCCCeEEEEEeeecCCCC---------cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCc-----------
Confidence 99999999999987653211 11236789999999999888899999999999999 221
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
....+..|...+.+++|.+ +++++++++.||.|++|| ..+....+
T Consensus 134 --------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~ 179 (313)
T 3odt_A 134 --------------------------------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTF 179 (313)
T ss_dssp --------------------------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEE
T ss_pred --------------------------------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEE
Confidence 1223346888999999998 999999999999999999 45666777
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcE
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSI 328 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i 328 (450)
...+...+.+++|+|.+ .+++++.||.|++||+++++ .+..+..|...|++++|+|++ .|++++.||.|
T Consensus 180 ~~~~~~~i~~~~~~~~~--~~~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v 248 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDG--HFISCSNDGLIKLVDMHTGD--------VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTV 248 (313)
T ss_dssp CSSCSSCEEEEEEEETT--EEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEEEECTTS-CEEEEETTSEE
T ss_pred eccCcccEEEEEEcCCC--eEEEccCCCeEEEEECCchh--------hhhhhhcCCceEEEEEEecCC-CEEEEecCCEE
Confidence 64589999999999843 39999999999999997765 566777899999999999999 58899999999
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
++||+++++.+ ..+..|...|.+++|+++ .+++++.||.|++||++++
T Consensus 249 ~iwd~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 249 RIWSKENGSLK-------------QVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEECTTTCCEE-------------EEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGG
T ss_pred EEEECCCCcee-------------EEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCC
Confidence 99999988755 566778889999999865 5778999999999999875
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=263.47 Aligned_cols=269 Identities=10% Similarity=0.065 Sum_probs=206.6
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIR 150 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~ 150 (450)
.-..+|.+++| ||+++||++.|++|+ |....+ . +.+|...|.+++|+|++ .++++.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~------------l~gh~~~v~~V~FsPdg-----~~~~~~ 70 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---D------------INCNSKNLFHVKEFPLE-----FENKLD 70 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---C------------CSSBGGGTEEEEEECCC-----CCCTTT
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---e------------ecCCCccEEEEEECCCC-----CcceEE
Confidence 55689999999 899999999999999 643332 1 35899999999999987 455555
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+|+.+... ... + .|...|.+++|+|+|++|++++.
T Consensus 71 ~~~~~~~~-----------------~~~---------------------------~-~~~~~V~~vawSPdG~~LAs~s~ 105 (588)
T 2j04_A 71 FELAQQNG-----------------LLN---------------------------S-QPVCYPRVCKPSPIDDWMAVLSN 105 (588)
T ss_dssp TSCCCSSC-----------------SST---------------------------T-SCSCCEEEEEECSSSSCEEEEET
T ss_pred EEeCCCce-----------------Eee---------------------------c-CCCCcEEEEEECCCCCEEEEEeC
Confidence 55543221 000 0 25678999999999999999999
Q ss_pred CCcEEEEecCCCeEEEEeeccccc-----ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH----h
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDD-----AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL----E 301 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~ 301 (450)
||.|++||... ++..+. |.. .+.+++|+|+ +.+|++|+.||.|++||+..+.... ...-.+..+ .
T Consensus 106 dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~-~~~i~l~ti~~~~~ 179 (588)
T 2j04_A 106 NGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENT-PEFYFESSIRLSDA 179 (588)
T ss_dssp TSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTC-CCCEEEEEEECSCT
T ss_pred CCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCcccc-ccceeeeeeecccc
Confidence 99999999644 555554 333 5999999995 4599999999999999997754100 000012333 5
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc-cCCccceEEEEEeCCeEEEEeCCCe
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL-RGHTKAILCLAVVSNLLFSGSSDNT 380 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~ 380 (450)
+|...|.+++|+||| +++++.|+.|++||+..++.. .....+ .+|...|.+++|+++.|++++ +++
T Consensus 180 gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~----------~~~~tL~~~h~~~V~svaFsg~~LASa~-~~t 246 (588)
T 2j04_A 180 GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ----------PVSRMIQNASRRKITDLKIVDYKVVLTC-PGY 246 (588)
T ss_dssp TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC----------CCEEEEECCCSSCCCCEEEETTEEEEEC-SSE
T ss_pred cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc----------cceeeecccccCcEEEEEEECCEEEEEe-CCe
Confidence 688899999999999 888899999999999876421 011234 478889999999988999887 699
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEE--EecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA--VVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|++||+..+ .......+|...|..++| +|++. .+++++.||+ ++|.+
T Consensus 247 IkLWd~~~~--------~~~~~~~gh~~~V~~va~~~s~d~~-------------~La~a~edG~-klw~~ 295 (588)
T 2j04_A 247 VHKIDLKNY--------SISSLKTGSLENFHIIPLNHEKEST-------------ILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEEETTTT--------EEEEEECSCCSCCCEEEETTCSSCE-------------EEEECSSCEE-EEEES
T ss_pred EEEEECCCC--------eEEEEEcCCCceEEEEEeeeCCCCC-------------EEEEEcCCCC-EEEee
Confidence 999999864 332333389999999999 99998 9999999999 99986
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=257.83 Aligned_cols=249 Identities=12% Similarity=0.065 Sum_probs=173.1
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++++.|++|++||.+.+..... .....+.+|.+.|++++|+
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~--------------------------------------~~~~~~~gH~~~v~~v~~~ 145 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQ--------------------------------------HVLGGKSGHHNFVNDIDIA 145 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE--------------------------------------EEECTTTSCSSCEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCcccee--------------------------------------eeecccCCCCCceEEEEEc
Confidence 89999999999999988742110 1112234799999999999
Q ss_pred c--------CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 220 S--------DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 220 ~--------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
| ++++|++|+.|++|+|||+.++.++..+. .|...+.+++|+|.+..+|++++.||.|++||+++++....
T Consensus 146 p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 146 DVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp EEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred cccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence 7 78999999999999999999888777776 68899999999997666899999999999999987653211
Q ss_pred c-----------------cchhhhhHhhcccceEEEEEc-CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceee--
Q 041325 292 K-----------------KHSLVQTLEKHKSAVTALALS-TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVL-- 351 (450)
Q Consensus 292 ~-----------------~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-- 351 (450)
. .........+|...+.++.|+ |+++.|++++.|+.+++||+..++....+.........
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 0 001112234677889999987 79999999999999999999887654332221111000
Q ss_pred ----eccccCCccceEEEEEe--C-CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCC
Q 041325 352 ----KGALRGHTKAILCLAVV--S-NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNR 424 (450)
Q Consensus 352 ----~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 424 (450)
......+...+..+.+. + .++++|+.||.|++||+.++ .+...+.+|..+|.+++|+|+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~--------~~~~~~~~~~~~V~svafspdG~---- 372 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK--------DSNSIPIQLGMPIVDFCWHQDGS---- 372 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT--------TCCEEEEECSSCEEEEEECTTSS----
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC--------cEEEEecCCCCcEEEEEEcCCCC----
Confidence 01111122222222222 1 27788899999999999875 44556677889999999999999
Q ss_pred CCCCCCceEEEEEcccCCcEEEEEe
Q 041325 425 NSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 425 ~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+||+++.|| +.+|.|
T Consensus 373 ---------~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 373 ---------HLAIATEGS-VLLTRL 387 (393)
T ss_dssp ---------EEEEEESSE-EEEEEE
T ss_pred ---------EEEEEeCCC-eEEEEE
Confidence 999998777 666655
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=254.52 Aligned_cols=269 Identities=12% Similarity=0.198 Sum_probs=205.1
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--e---CCEEEEeeCCCcEEEecCCCCC-ceeeeecCCCCcceeEEecCCCceEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--A---GKLLYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d---~~~l~tgs~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
...+++....... +|...|++++| + +++|++|+.||.|++||+.+++ .... +.+|...|.+
T Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~v~~ 116 (357)
T 3i2n_A 50 EIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS------------VKGHKEIINA 116 (357)
T ss_dssp EECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE------------ECCCSSCEEE
T ss_pred eCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE------------EEecccceEE
Confidence 3333444433332 79999999999 4 6999999999999999999876 4433 6789999999
Q ss_pred EEEe------CC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 133 LVVL------GD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 133 l~~~------~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
++|. ++ .|++++.||.|++||+..+.. .+..+....
T Consensus 117 ~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~---------------~~~~~~~~~--------------------- 160 (357)
T 3i2n_A 117 IDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD---------------PVANMEPVQ--------------------- 160 (357)
T ss_dssp EEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---------------CSEEECCCT---------------------
T ss_pred EeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---------------cceeccccC---------------------
Confidence 9764 44 399999999999999988731 111111000
Q ss_pred eeecCCCceEEEE----EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeec--CCcEEEEEcCCCcE
Q 041325 205 TWVHHVDTVSALA----LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS--NDGFVYTGSADTKI 278 (450)
Q Consensus 205 ~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i 278 (450)
..+...+.+++ |+++++++++++.||.|++||+++++..... .|...|.+++|+|. ...++++++.||.|
T Consensus 161 --~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 161 --GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp --TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred --CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 01234788888 7889999999999999999999999876554 58899999999983 34589999999999
Q ss_pred EEEeCcchhhhccccchhhhhH-----hhcccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCC------
Q 041325 279 KVWKKLRAALQVNKKHSLVQTL-----EKHKSAVTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDS------ 346 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------ 346 (450)
++||+++++ ....+ ..|...|++++|+|+++ +|++|+.||.|++||++.+..........
T Consensus 237 ~i~d~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 237 HVFDMRTQH--------PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp EEEEEEEEE--------TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred EEEeCcCCC--------cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence 999998765 33333 37899999999999998 89999999999999998765432211111
Q ss_pred CceeeeccccCCccceEEEEEeCC--eEE-EEeCCCeEEEeeCCC
Q 041325 347 GHMVLKGALRGHTKAILCLAVVSN--LLF-SGSSDNTIRIWRRSS 388 (450)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~-s~~~dg~v~iwd~~~ 388 (450)
........+.+|...|++++|+++ +|+ +++.||.|++||+.+
T Consensus 309 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 309 GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred cccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 122455677889999999999855 676 899999999999986
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=255.10 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=208.6
Q ss_pred cccCCCccCCCC-CccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE---eCCE
Q 041325 12 RRNKEPKFQPSS-NHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI---AGKL 87 (450)
Q Consensus 12 ~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~ 87 (450)
..+..+.|+|+. ..+.+...+..+.. +.....+....+...+|...|.+++| ++++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~i--------------------wd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIIL--------------------WDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEE--------------------EETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEE--------------------EeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 456677788876 56666655554433 33333455556665589999999999 4689
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
|++|+.||.|++||+.+...... .. ..+|...|.+++|+++. |++++.||.|++||++..
T Consensus 134 l~s~~~d~~i~iwd~~~~~~~~~-~~---------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------- 195 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGSVIQVF-AK---------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-------- 195 (383)
T ss_dssp EEEEETTTEEEEEETTSCEEEEE-EC---------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC--------
T ss_pred EEEEeCCCEEEEEECCCCceEEE-ec---------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC--------
Confidence 99999999999999986432222 11 12455889999999876 999999999999999532
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCC---
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSD--- 241 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--- 241 (450)
....+..|...|.+++|+|+++ ++++++.|+.|++||+++
T Consensus 196 ------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 196 ------------------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp ------------------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred ------------------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence 1223446889999999999998 999999999999999997
Q ss_pred -CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc-----------------
Q 041325 242 -FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH----------------- 303 (450)
Q Consensus 242 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------------- 303 (450)
+..+..+ .|...|.+++|+|....+|++++.|+.|++||+++.+. ...+..|
T Consensus 240 ~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 240 KNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK--------PDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp TTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS--------CSEEEECCBCCCTTSCCCCCEECS
T ss_pred ccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc--------ccccccccccccccccceEEeccC
Confidence 5666666 48899999999983344899999999999999987662 1222211
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC--CccceEEEEEeC--CeEEEEeCCC
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG--HTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
...+..++|+|++++ +|+.||.|++||+.+++.+ ..+.+ |...+.+++|++ ++|++|+ ||
T Consensus 310 ~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~-------------~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV-------------HQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE-------------EEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred CCCceEEEecCCccc--ccCCCCeEEEEecCCCcee-------------eeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 134455777777776 7889999999999988765 33443 567778889984 4888987 99
Q ss_pred eEEEeeCCC
Q 041325 380 TIRIWRRSS 388 (450)
Q Consensus 380 ~v~iwd~~~ 388 (450)
.|++||+++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999874
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=255.17 Aligned_cols=303 Identities=15% Similarity=0.131 Sum_probs=219.2
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCC---ceeeeecCCC----------------------------------
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN---YVNITSTDVG---------------------------------- 116 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~---~~~~~~~~~~---------------------------------- 116 (450)
.++.+++| ||++|+++ .++.|++||+.+++ .+........
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 57888888 78876666 56899999999888 4433221110
Q ss_pred --------CcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcC--CCceeEEeccCcccccceeeeeeccCCC
Q 041325 117 --------DHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKID--NNTSAYYSTSGKLKNKYYERIATLPTLN 183 (450)
Q Consensus 117 --------~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (450)
........+|.+.|.+++|++++ | ++++.||.|++||+. ++.. +..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~----------------~~~~---- 143 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV----------------LKLR---- 143 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC----------------EEEE----
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce----------------eeee----
Confidence 00011123566789999999887 4 888999999999998 5521 1111
Q ss_pred cceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE----EeecccccceEEE
Q 041325 184 DRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE----SVKNAHDDAINAI 259 (450)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~ 259 (450)
....|...|.+++|+|++++|++|+.+|.|++|++.+++... .+. .|...|.++
T Consensus 144 ---------------------~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~ 201 (450)
T 2vdu_B 144 ---------------------KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDV 201 (450)
T ss_dssp ---------------------EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEE
T ss_pred ---------------------ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEE
Confidence 011467789999999999999999999999999998877543 555 788999999
Q ss_pred EEeec--CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh-HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCC
Q 041325 260 VVSKS--NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT-LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG 336 (450)
Q Consensus 260 ~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~ 336 (450)
+|+|+ ...+|++++.|+.|++||+++++ .+.. +.+|...|.+++|+ ++++|++|+.|+.|++||+.++
T Consensus 202 ~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 202 HLIKDSDGHQFIITSDRDEHIKISHYPQCF--------IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp EEEECTTSCEEEEEEETTSCEEEEEESCTT--------CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred EEcCCCCCCcEEEEEcCCCcEEEEECCCCc--------eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 99995 15589999999999999997765 3433 45789999999999 9999999999999999999998
Q ss_pred ceeeeCCCCCCce------------eeeccccCCccceEEEEEeC--CeEEEEe-CCCeEEEeeC--CCCccccCCCcee
Q 041325 337 NYIVDGDDDSGHM------------VLKGALRGHTKAILCLAVVS--NLLFSGS-SDNTIRIWRR--SSSVTDHQKGYSC 399 (450)
Q Consensus 337 ~~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~--~~~~~~~~~~~~~ 399 (450)
+.+..+....... ............|.+++|.+ ++|++++ .|+.|++|++ .. ......
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-----~~~l~~ 347 (450)
T 2vdu_B 273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-----KGDLAL 347 (450)
T ss_dssp CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-----TTCEEE
T ss_pred cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-----CCceee
Confidence 8664332110000 00000013345788999984 4888888 8999999999 33 223467
Q ss_pred EEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc------CCcEEEEEe
Q 041325 400 LAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL------DCEIKIWQI 449 (450)
Q Consensus 400 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~------Dg~i~iw~l 449 (450)
+..+..| ..|.+++|+|++. ++++++. +..|.+|.+
T Consensus 348 ~~~~~~~-~~v~~~~~~~~~~-------------~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 348 KQIITFP-YNVISLSAHNDEF-------------QVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEEEECS-SCEEEEEEETTEE-------------EEEECCTTCCSSCCCSEEEEEE
T ss_pred ccEeccC-CceEEEEecCCcE-------------EEEEecccCCCCCCcceEEEEE
Confidence 7778888 8899999999643 4444443 556888875
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=276.93 Aligned_cols=257 Identities=21% Similarity=0.245 Sum_probs=204.4
Q ss_pred eEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--e--E
Q 041325 67 ATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--K--L 140 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~--l 140 (450)
.++. +|.+.|++++| ++++|++|+.||.|+|||+.++..... ..+.+|.+.|.+++|+++ . |
T Consensus 3 ~~l~--gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~----------~~l~~h~~~V~~l~~s~~~~~~~l 70 (753)
T 3jro_A 3 VIAN--AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI----------DTLTGHEGPVWRVDWAHPKFGTIL 70 (753)
T ss_dssp -------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE----------EEECCCSSCEEEEEECCTTSCSEE
T ss_pred eecc--cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc----------eeccCCcCceEEEEecCCCCCCEE
Confidence 4556 99999999999 799999999999999999874432111 236789999999999854 3 9
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
++|+.||.|++||+.++.. .....+.+|...|.+++|+|
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~-----------------------------------------~~~~~~~~h~~~V~~v~~sp 109 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRW-----------------------------------------SQIAVHAVHSASVNSVQWAP 109 (753)
T ss_dssp EEEETTSCEEEEEEETTEE-----------------------------------------EEEEEECCCSSCEEEEEECC
T ss_pred EEEeCCCeEEEEECCCCcc-----------------------------------------cccccccCCCCCeEEEEECC
Confidence 9999999999999988731 11223346889999999999
Q ss_pred C--CCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeec------------CCcEEEEEcCCCcEEEEeCc
Q 041325 221 D--GSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKS------------NDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 221 ~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~i~vwd~~ 284 (450)
+ ++++++|+.||.|++||+.++. ....+. .|...|.++.|+|. ++.++++|+.||.|++||++
T Consensus 110 ~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~ 188 (753)
T 3jro_A 110 HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (753)
T ss_dssp GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence 8 9999999999999999998873 233344 78899999999984 35589999999999999998
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCC---CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTD---GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.+. ........+.+|...|++++|+|+ +++|++|+.||.|++||+.+++.. ..........|...
T Consensus 189 ~~~----~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~--------~~~~~~~~~~~~~~ 256 (753)
T 3jro_A 189 SDA----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDV 256 (753)
T ss_dssp TTT----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC--------CBCCBSSSSCCSSC
T ss_pred CCc----ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc--------ceeEEeccCCCCCc
Confidence 764 222355667789999999999999 899999999999999999976421 01122344568889
Q ss_pred eEEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 362 ILCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
|++++|++ +++++|+.||.|++|++..+
T Consensus 257 v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 257 LWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred eEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 99999985 49999999999999999853
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=253.78 Aligned_cols=271 Identities=20% Similarity=0.289 Sum_probs=207.8
Q ss_pred CCCcceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEeCC
Q 041325 73 GNSSYIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~d 146 (450)
+|.+.|++++| + +.+||+|+.||.|++|++........ ..........+.+|...|.+++|+++ .|++|+.|
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 89999999999 2 67999999999999999876311100 00112233457799999999999976 49999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
|.|++|++....... ..+ .....+..|...|.+++|+| ++.+|
T Consensus 204 g~i~vwd~~~~~~~~------------~~~------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 204 HTICLWDINATPKEH------------RVI------------------------DAKNIFTGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp SCEEEEETTSCCBGG------------GEE------------------------ECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred CeEEEEeCCCCCCCC------------cee------------------------ccceeecCCCCCEeeeEEeCCCCCEE
Confidence 999999998742100 000 01223446899999999999 78899
Q ss_pred EEEeCCCcEEEEecCCC---eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 226 YSTSWDRTFKIWRTSDF---RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
++++.||.|++||++++ +.+..+. .|...|++++|+|.+..++++|+.||.|++||++... ..+..+..
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------~~~~~~~~ 319 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------LKLHSFES 319 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------SCSEEEEC
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------CCeEEeec
Confidence 99999999999999987 4666666 7899999999999777789999999999999997633 14566777
Q ss_pred cccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeC-CCCCCceeeeccccCCccceEEEEEeCC---eEEEEeC
Q 041325 303 HKSAVTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDG-DDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSS 377 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~ 377 (450)
|...|++++|+|+++ +|++++.||.|++||+......... ..............+|...|.+++|+++ +|++++.
T Consensus 320 h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence 999999999999985 6999999999999999863211000 0000001234567789999999999955 8999999
Q ss_pred CCeEEEeeCCCC
Q 041325 378 DNTIRIWRRSSS 389 (450)
Q Consensus 378 dg~v~iwd~~~~ 389 (450)
||.|++|++...
T Consensus 400 dg~i~iw~~~~~ 411 (430)
T 2xyi_A 400 DNIMQVWQMAEN 411 (430)
T ss_dssp TSEEEEEEECHH
T ss_pred CCCEEEeEcccc
Confidence 999999998864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=276.18 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=207.2
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|++++|++++ |++|+.||+|++||+..+..
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------------------------- 43 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------------------------- 43 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE----------------------------------------
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC----------------------------------------
Confidence 467999999999999876 99999999999999985421
Q ss_pred ecceeeeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecC-CcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSN-DGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 274 (450)
.....+.+|.+.|.+++|+++ +++|++|+.||.|++||+.+++ .+..+. .|...|.+++|+|+. ...+++|+.
T Consensus 44 -~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~ 121 (753)
T 3jro_A 44 -KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASS 121 (753)
T ss_dssp -EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred -ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeC
Confidence 122234479999999999987 9999999999999999999887 555555 789999999999863 558999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-------------CCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-------------DGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
||.|++||++.+.. .....+..|...|.+++|+| ++++|++|+.||.|++||++++...
T Consensus 122 dg~I~vwdl~~~~~------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-- 193 (753)
T 3jro_A 122 DGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-- 193 (753)
T ss_dssp TSEEEEEECCSSSC------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--
T ss_pred CCcEEEEEeecCCC------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--
Confidence 99999999977631 12334567889999999999 5899999999999999999876422
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
......+.+|...|++++|++ +++++|+.||.|++||+.++... ..........|...|++++|+
T Consensus 194 -------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~v~~l~~s 263 (753)
T 3jro_A 194 -------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP---WKKTLLKEEKFPDVLWRASWS 263 (753)
T ss_dssp -------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC---CBCCBSSSSCCSSCCCCEEEC
T ss_pred -------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc---ceeEEeccCCCCCceEEEEEc
Confidence 234456788999999999984 48999999999999999874211 111233345688999999999
Q ss_pred ecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++. +|++|+.||.|++|+++
T Consensus 264 pdg~-------------~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 264 LSGN-------------VLALSGGDNKVTLWKEN 284 (753)
T ss_dssp TTTC-------------CEEEECSSSCEECCBCC
T ss_pred CCCC-------------EEEEEcCCCEEEEEecC
Confidence 9999 89999999999999974
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=234.96 Aligned_cols=296 Identities=13% Similarity=0.066 Sum_probs=198.6
Q ss_pred cceeeeEEeecCCCc----ceEEEEE---e--CCEEEEeeCCCcEEEecCCCC---CceeeeecCCCCcceeEEecCCCc
Q 041325 62 EHQCSATLKVKGNSS----YIPSLAI---A--GKLLYGGSSNGEIRAWNRDPN---NYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~----~v~~~~~---d--~~~l~tgs~dg~v~vw~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
..+++..|+ .-.+ .+.++-| . ..-++++++ ..|++|+..++ +... .+.+|..+
T Consensus 24 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~------------~~~~~~~~ 88 (356)
T 2w18_A 24 NLQLVSELK--NPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLY------------TWHFAEVP 88 (356)
T ss_dssp CEEEEEEEC--CCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEE------------EEECCSSC
T ss_pred eeeeeehhc--CCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeE------------EEeccCce
Confidence 346677776 3333 3455555 2 224666665 79999999887 3333 37788889
Q ss_pred eEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 130 VKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 130 v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
|..+.+.||. |++..- =..-.++.+.-. +.++ .+ +... .
T Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s----------------------pd~~-~~-------~~~l-------~ 131 (356)
T 2w18_A 89 VLQIVPVPDVYNLVCVALGNLEIREIRALFCS----------------------SDDE-SE-------KQVL-------L 131 (356)
T ss_dssp EEEECCCTTCCSCEEEEECSSSEEEEEEECC-----------------------------C-------CEEE-------E
T ss_pred eEEEEEcCcccceeeeeeccccccceEEEEEC----------------------CCcc-cc-------ccEE-------E
Confidence 9999999865 333221 111111111100 0000 00 0000 0
Q ss_pred eecCCCceEEEEEccCCCEEEEEe--CCCcEEEEec-CCCeEEEEeecccccceEEEEEeec--CCcEEEEEcCCCcEEE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTS--WDRTFKIWRT-SDFRCLESVKNAHDDAINAIVVSKS--NDGFVYTGSADTKIKV 280 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~v 280 (450)
..+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+. .|...+..++|++. +...|++++.|++|++
T Consensus 132 s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI 207 (356)
T 2w18_A 132 KSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVI 207 (356)
T ss_dssp EEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEE
T ss_pred eCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEE
Confidence 01233344443 5666666643 5999999999 5588777776 78888888888872 3358999999999999
Q ss_pred EeCcchhhhccccchhhhhHhhcc---cceEEEEEcCCCCEE------------EEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHK---SAVTALALSTDGTVL------------YSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~---~~i~~l~~~~~~~~l------------~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
||+.+++ .+..+.+|. ..+.+++|+|+|+++ ++|+.|++|++||..+++.+...
T Consensus 208 WDl~TGk--------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~--- 276 (356)
T 2w18_A 208 WNLKTGQ--------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM--- 276 (356)
T ss_dssp EETTTCC--------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE---
T ss_pred EECCCCc--------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE---
Confidence 9998877 555565433 467788999999876 56788999999999998765210
Q ss_pred CCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE-EEEEEecCCCCCC
Q 041325 346 SGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK-CLTAVVDSDYSNR 424 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~ 424 (450)
......+|...+.+..+++.++++++.|++|+|||+.++ +++..+.+|...+. .++|+|+++
T Consensus 277 -----~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG--------k~l~tL~gH~~~vvs~vafSPDG~---- 339 (356)
T 2w18_A 277 -----LYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG--------QCTALLPPVSDQHWSFVKWSGTDS---- 339 (356)
T ss_dssp -----EECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC--------SEEEEECCC--CCCCEEEECSSSS----
T ss_pred -----EeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC--------cEEEEecCCCCCeEEEEEECCCCC----
Confidence 000124666666777777889999999999999999985 78889999988665 589999999
Q ss_pred CCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 425 NSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 425 ~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.|++|+|||+.
T Consensus 340 ---------~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 340 ---------HLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp ---------EEEEECTTSCEEEEEEC
T ss_pred ---------EEEEEECCCcEEEecCC
Confidence 99999999999999974
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-32 Score=244.44 Aligned_cols=254 Identities=13% Similarity=0.097 Sum_probs=198.6
Q ss_pred ecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+|.+.|.+++|+++. |++++.||.|++|++...... .
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------------------------------------~ 47 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------------------------------------V 47 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------E
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------c
Confidence 4899999999999775 999999999999999876310 0
Q ss_pred ceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEec-CCCeEEEEeecc--cccceEEEEEeecCCcEEEEEcCCCc
Q 041325 202 KKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRT-SDFRCLESVKNA--HDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
.......|...|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+. . |...|.+++|+| ..++++++.|+.
T Consensus 48 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~--~~~l~s~~~d~~ 123 (342)
T 1yfq_A 48 DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALT-NNEANLGICRICKYG--DDKLIAASWDGL 123 (342)
T ss_dssp EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECB-SCCCCSCEEEEEEET--TTEEEEEETTSE
T ss_pred cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eecc-ccCCCCceEEEEeCC--CCEEEEEcCCCe
Confidence 0112336888999999999999 9999999999999999 87765 4554 6 899999999998 559999999999
Q ss_pred EEEEeCcchhhhc-cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccc
Q 041325 278 IKVWKKLRAALQV-NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 278 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 355 (450)
|++||+++..... ......+..+. |...|.+++|+|++ +++++.|+.|++||+++ +... .....
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~-----------~~~~~ 189 (342)
T 1yfq_A 124 IEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN-----------GTIEE 189 (342)
T ss_dssp EEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC-----------CEEEE
T ss_pred EEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc-----------ceeee
Confidence 9999987610000 00011344444 78899999999887 99999999999999987 4421 12344
Q ss_pred cCCccceEEEEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc---------ceEEEEEEecCCCCC
Q 041325 356 RGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR---------PVKCLTAVVDSDYSN 423 (450)
Q Consensus 356 ~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~ 423 (450)
..|...+.+++|++ +++++++.||.|++|+++.... .........+..|.. .|.+++|+|++.
T Consensus 190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--- 264 (342)
T 1yfq_A 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD--DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--- 264 (342)
T ss_dssp CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC--STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---
T ss_pred cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc--ccccccceeeecccccccccccceeEEEEEEcCCCC---
Confidence 56788999999986 4999999999999999976300 000134555666654 999999999999
Q ss_pred CCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 424 RNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 424 ~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.||.|++||++
T Consensus 265 ----------~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 265 ----------FLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ----------CEEEEETTSCEEEEETT
T ss_pred ----------EEEEecCCceEEEEcCc
Confidence 89999999999999974
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=254.75 Aligned_cols=262 Identities=11% Similarity=0.173 Sum_probs=192.1
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
.|.+.|.+++|++++ |++|+.||.|++||+.++........ ..+ ..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~-----~~~---------------------------~~ 73 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR-----GEY---------------------------NV 73 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC-----CCE---------------------------EE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc-----cce---------------------------eE
Confidence 467899999999876 99999999999999987631100000 000 01
Q ss_pred eeeeecCC------------CceEEEEEccCC--CEEEEEeCCCcEEEEecCCCeEE-----------------------
Q 041325 203 KCTWVHHV------------DTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFRCL----------------------- 245 (450)
Q Consensus 203 ~~~~~~~~------------~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~----------------------- 245 (450)
...+.+|. +.|.+++|+|++ .+|++++.|+.|++||+.+++..
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence 22344576 889999999998 79999999999999999765432
Q ss_pred ----------------EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 246 ----------------ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 246 ----------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
..+...|...|.+++|+|+ ..+|++| .|+.|++||++...............+..|...|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred eccccchheeeeccceEEeccCCCcceEEEEEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence 1233478999999999995 4488888 799999999974321000000001146689999999
Q ss_pred EEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc------------cceEEEEEeCC--eEEE
Q 041325 310 LALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT------------KAILCLAVVSN--LLFS 374 (450)
Q Consensus 310 l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~--~l~s 374 (450)
++|+|++ ++|++|+.||.|++||+++++... .....+..|. ..|.+++|+++ +|++
T Consensus 232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCD---------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTCSSSC---------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred EEECCCCCcEEEEEeCCCeEEEEECcCCcccc---------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence 9999998 999999999999999999876410 0012333444 49999999854 8999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc---------------eEEEEEEecCCCCCCCCCCCCceEEEEEcc
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP---------------VKCLTAVVDSDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~ 439 (450)
++. +.|++||++.. .+++..+.+|... +..++|+|++. +|++|+
T Consensus 303 ~~~-~~v~iwd~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-------------~l~s~s 361 (447)
T 3dw8_B 303 RDY-LSVKVWDLNME-------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-------------VVMTGS 361 (447)
T ss_dssp EES-SEEEEEETTCC-------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-------------EEEEEC
T ss_pred eeC-CeEEEEeCCCC-------ccccceeeccccccccccccccccccccceEEEECCCCC-------------EEEEec
Confidence 998 99999999862 2455666677542 33499999999 999999
Q ss_pred cCCcEEEEEeC
Q 041325 440 LDCEIKIWQIR 450 (450)
Q Consensus 440 ~Dg~i~iw~l~ 450 (450)
.||.|++||++
T Consensus 362 ~dg~v~iwd~~ 372 (447)
T 3dw8_B 362 YNNFFRMFDRN 372 (447)
T ss_dssp STTEEEEEETT
T ss_pred cCCEEEEEEcC
Confidence 99999999974
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=252.21 Aligned_cols=206 Identities=15% Similarity=0.135 Sum_probs=165.4
Q ss_pred EecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
..+|...|++|+|+|.. |++|+.||+|++||+..+...
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~--------------------------------------- 155 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP--------------------------------------- 155 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------------------------
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------------------------
Confidence 56788999999999743 999999999999999876321
Q ss_pred ecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 200 RHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
....+.+|.+.|++++|+| ++++|++|+.||+|++||++++....... ..+...+.+++|+|+ ..+|++|+.||.
T Consensus 156 --~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~ 232 (435)
T 4e54_B 156 --TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGN 232 (435)
T ss_dssp --EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT-TTEEEEECSSSB
T ss_pred --eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCC-CCEEEEEeCCCc
Confidence 1112336999999999998 78999999999999999998755433322 123446788999984 458999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
|++||++.. .+..+.+|...|++++|+|+++ +|++|+.|+.|++||+++.+... ......
T Consensus 233 i~~wd~~~~---------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----------~~~~~~ 293 (435)
T 4e54_B 233 VILLNMDGK---------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----------SFLYSL 293 (435)
T ss_dssp EEEEESSSC---------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----------CCSBCC
T ss_pred EeeeccCcc---------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc----------eEEEee
Confidence 999998643 3556778999999999999876 78899999999999998765321 113346
Q ss_pred CCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 357 GHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
+|...|++++|++ ++|++++.||.|++||+.++
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 7999999999985 49999999999999999875
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=246.86 Aligned_cols=242 Identities=19% Similarity=0.260 Sum_probs=194.3
Q ss_pred ceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
....++++++. +++++.||.|++|++..... . ......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~----------------~-----------------------~~~~~~ 76 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR----------------V-----------------------DKNVPL 76 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE----------------C-----------------------CTTCCC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC----------------C-----------------------CCCCce
Confidence 34568888887 34578899999999976521 0 011223
Q ss_pred eecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCC-------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 206 WVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDF-------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++ +.+..+. .|...|.+++|+|++..++++++.||.
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 447999999999999 9999999999999999999987 5566776 899999999999976579999999999
Q ss_pred EEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
|++||+++++ .+..+ ..|...|.+++|+|++++|++++.||.|++||+++++.+ ..+
T Consensus 156 i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------~~~ 214 (402)
T 2aq5_A 156 ILVWDVGTGA--------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV-------------AEK 214 (402)
T ss_dssp EEEEETTTTE--------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE-------------EEE
T ss_pred EEEEECCCCC--------ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee-------------eee
Confidence 9999998766 45555 678999999999999999999999999999999988755 344
Q ss_pred -cCCccc-eEEEEEeCC--eEEEE---eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCC
Q 041325 356 -RGHTKA-ILCLAVVSN--LLFSG---SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428 (450)
Q Consensus 356 -~~~~~~-v~~~~~~~~--~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 428 (450)
..|... +.++.|+++ +|++| +.|+.|++||+++... ..... ...|...+.+++|+|++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~~~v~~~~~s~~~~-------- 280 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-----PLSLQ-ELDTSSGVLLPFFDPDTN-------- 280 (402)
T ss_dssp ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-----CSEEE-ECCCCSSCEEEEEETTTT--------
T ss_pred ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-----CceEE-eccCCCceeEEEEcCCCC--------
Confidence 566665 888999854 88888 7999999999987411 11122 235778899999999999
Q ss_pred CCceEEEE-EcccCCcEEEEEeC
Q 041325 429 SSTSFLVY-SGSLDCEIKIWQIR 450 (450)
Q Consensus 429 ~~~~~~l~-s~~~Dg~i~iw~l~ 450 (450)
+|+ +|+.||.|++||++
T Consensus 281 -----~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 281 -----IVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp -----EEEEEETTCSCEEEEEEC
T ss_pred -----EEEEEEcCCCeEEEEEec
Confidence 665 66689999999974
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=257.42 Aligned_cols=310 Identities=10% Similarity=0.056 Sum_probs=221.7
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCC----------CCCCCCccccCCCCCccceeeeEEeecCCCcceEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVP----------SLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLA 82 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~ 82 (450)
.+.+..|+|++..+++++.+.+++ .+..+..- .|.|.. .........++....+.+ +|...|.+++
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~-d~~~~~~l~gh~~~v~~V~FsPdg--~~~~~~~~~~~~~~~~~~-~~~~~V~~va 92 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG-QPKYAKDINCNSKNLFHVKEFPLE--FENKLDFELAQQNGLLNS-QPVCYPRVCK 92 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE-EECCCSCCSSBGGGTEEEEEECCC--CCCTTTTSCCCSSCSSTT-SCSCCEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCceee-cccccceecCCCccEEEEEECCCC--CcceEEEEeCCCceEeec-CCCCcEEEEE
Confidence 677999999999999999999886 33322100 001111 122222333333333332 5688999999
Q ss_pred E--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC-----ceEEEEEeCCe--EEEEeCCCeEEEEE
Q 041325 83 I--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD-----AVKSLVVLGDK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 83 ~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~--l~s~~~dg~i~iw~ 153 (450)
| ||.+||+++.||.|++||.+. +... +. |.. .|.+++|+|++ |++|+.||+|++||
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~------------l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTN------------LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EEEE------------CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--eeee------------cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 9 899999999999999999544 2221 23 443 59999999988 99999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
+..+... ...+-.+..+. ....+|.+.|.+++|+|+| +++++.|+.
T Consensus 158 ~~~~~l~---------~~~~i~l~ti~-----------------------~~~~gh~~~V~sVawSPdg--Laass~D~t 203 (588)
T 2j04_A 158 IRKNSEN---------TPEFYFESSIR-----------------------LSDAGSKDWVTHIVWYEDV--LVAALSNNS 203 (588)
T ss_dssp CCCCTTT---------CCCCEEEEEEE-----------------------CSCTTCCCCEEEEEEETTE--EEEEETTCC
T ss_pred CCCCccc---------cccceeeeeee-----------------------cccccccccEEEEEEcCCc--EEEEeCCCe
Confidence 9876210 00000111110 0013588899999999999 888899999
Q ss_pred EEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 234 FKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 234 i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
|++||+.+++. ...+...|...|.+++|+ + ..+++++ ++.|++||+..++ ......+|.+.+..+
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~--------~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYS--------ISSLKTGSLENFHII 271 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTE--------EEEEECSCCSCCCEE
T ss_pred EEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCe--------EEEEEcCCCceEEEE
Confidence 99999988773 245544678899999998 3 5888887 6999999987665 212222799999999
Q ss_pred EE--cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 311 AL--STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 311 ~~--~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
+| +|++..|++++.||+ ++|.... +++.++-.++++.|+++++|+...
T Consensus 272 a~~~s~d~~~La~a~edG~-klw~~d~-----------------------------~~~spd~~l~a~~d~~v~lW~~~g 321 (588)
T 2j04_A 272 PLNHEKESTILLMSNKTSY-KVLLEDE-----------------------------LHVTADNIIAPYLEKKFKKWSTIW 321 (588)
T ss_dssp EETTCSSCEEEEECSSCEE-EEEESSS-----------------------------EEEECCCSSHHHHHHHHHHTTTTT
T ss_pred EeeeCCCCCEEEEEcCCCC-EEEeecc-----------------------------EEECCCceEEEEcCCEEEEEECCC
Confidence 99 999999999999999 9998651 335555333444599999999864
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
+ .+..+.+ ...|.+++|+|||+ .+|+++.
T Consensus 322 ~---------~l~~~~~-~~~I~~va~SPdG~-------------~lA~~~~ 350 (588)
T 2j04_A 322 N---------EFNNYET-TLVIHGISLSPDGY-------------SIAIVYD 350 (588)
T ss_dssp T---------SSSSSCC-EEEEEEEEECTTSS-------------EEEEEEE
T ss_pred C---------ceeeecc-ceEEEEEEECCCCC-------------EEEEEEe
Confidence 2 2234444 67799999999999 8888863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=244.52 Aligned_cols=329 Identities=15% Similarity=0.182 Sum_probs=210.3
Q ss_pred CcccCCCccCC-CCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEe-----ecCCCcceEEEEE-
Q 041325 11 CRRNKEPKFQP-SSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLK-----VKGNSSYIPSLAI- 83 (450)
Q Consensus 11 ~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~h~~~v~~~~~- 83 (450)
...+..+.|+| ++..+.+...+..+..-......... ......... ..+|...|.+++|
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 108 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS--------------YYTCKAVCSIGRDHPDVHRYSVETVQWY 108 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS--------------CEEECEEEEECTTCTTCCSSCEEEEEEC
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc--------------eEeccccccccccccccCCCcEEEEEEc
Confidence 34777888999 88888887777766541111000000 000000000 1269999999999
Q ss_pred --eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----eEEEEeCCCeEEEEEcCC
Q 041325 84 --AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-----KLFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 84 --d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~~~dg~i~iw~~~~ 156 (450)
++++|++++.||.|++||+.+++.... ..+...+.++.+.+. .+++++.||.|++||+++
T Consensus 109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADV-------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp TTCTTCEEEEETTSEEEEEETTTTEEEEE-------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEeCCCeEEEeeCCCCcccee-------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 567999999999999999998876554 236678999999853 399999999999999987
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFK 235 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 235 (450)
+.. ...+..|...|.+++|+|+++ ++++++.||.|+
T Consensus 176 ~~~-------------------------------------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 176 GSC-------------------------------------------SHILQGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp SCC-------------------------------------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cce-------------------------------------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 721 223346888999999999988 589999999999
Q ss_pred EEecCCCe-EEEEee--------------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 236 IWRTSDFR-CLESVK--------------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 236 iwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
+||++++. .+..+. ..|...|.+++|+|+ ..++++++.||.|++||+++++....... ...
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~ 288 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYG---KVC 288 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCC---CCC
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccc---ccc
Confidence 99998765 333331 267889999999984 45899999999999999987652110000 000
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
......+........+..+++++.|+.|++||+.+++.+ ..+.+|...|++++|+++ +|++++.|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------------~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-------------TMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE-------------EEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce-------------eeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 011122222222334566777788999999999988755 567889999999999954 89999999
Q ss_pred CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|.|++||+.+. +.+.....+. ....+.+.... .+.+++.|+.+++|+.
T Consensus 356 g~i~iw~~~~~--------~~~~~~~~~~---~~~~~~~~~~~------------~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 356 CNILAWVPSLY--------EPVPDDDETT---TKSQLNPAFED------------AWSSSDEEGGTSAWSH 403 (408)
T ss_dssp SCEEEEEECC-------------------------------------------------------------
T ss_pred CeEEEEeCCCC--------CccCCCCceE---eccccccccce------------eecccCccCceeecCC
Confidence 99999999874 2222222221 11223332221 5677888999999985
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=235.90 Aligned_cols=247 Identities=17% Similarity=0.229 Sum_probs=191.5
Q ss_pred EecCCCceEEEEEeCC----e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 123 ATGNGDAVKSLVVLGD----K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~----~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
+.+|.+.|++++|+++ . |++|+.||.|++||+++...
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------------------- 76 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------------------- 76 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------------------------------------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------------------------------------
Confidence 6699999999999987 3 99999999999999987311
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeec-CCcEEEEEcCCC
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADT 276 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg 276 (450)
.....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|.+. ...++++++.||
T Consensus 77 ---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg 151 (368)
T 3mmy_A 77 ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDK 151 (368)
T ss_dssp ---EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTS
T ss_pred ---eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCC
Confidence 111234469999999999999999999999999999999999887754 58999999999432 344799999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.|++||+++++ .+..+..+ ..+.++.+. ...+++++.++.+++|+++...... .......
T Consensus 152 ~i~vwd~~~~~--------~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~ 211 (368)
T 3mmy_A 152 TLKFWDTRSSN--------PMMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEF---------RRIESPL 211 (368)
T ss_dssp EEEEECSSCSS--------CSEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEE---------EECCCSC
T ss_pred cEEEEECCCCc--------EEEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchh---------hhccccc
Confidence 99999998765 44444433 456666665 4588899999999999998764331 1112223
Q ss_pred CCccceEEEEEeCC----eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc------------ceEEEEEEecCC
Q 041325 357 GHTKAILCLAVVSN----LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR------------PVKCLTAVVDSD 420 (450)
Q Consensus 357 ~~~~~v~~~~~~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~~~~~~ 420 (450)
.+...+.++.+.+. .+++++.||.|++||+... .....+..+.+|.. .|++++|+|++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 286 (368)
T 3mmy_A 212 KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP-----NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG 286 (368)
T ss_dssp SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS-----CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC
T ss_pred cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC-----CccccceeeeeeecccccccccccccceEEEEEecCCC
Confidence 34444445554443 4999999999999999863 11245566677766 799999999999
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.||.|++||++
T Consensus 287 -------------~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 287 -------------TLATVGSDGRFSFWDKD 303 (368)
T ss_dssp -------------CEEEEETTSCEEEEETT
T ss_pred -------------EEEEEccCCeEEEEECC
Confidence 89999999999999974
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-29 Score=231.72 Aligned_cols=262 Identities=16% Similarity=0.159 Sum_probs=204.3
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~ 161 (450)
+.++++++.|+.|++||+.+++.... +..|. .+.+++|++++ + ++++.|+.|++||+.+++.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-- 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-- 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--
Confidence 34688999999999999998876655 44554 58999999877 4 6777899999999988732
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 240 (450)
+..+ .+...+.+++|+|++++++.+ +.++.|++||+.
T Consensus 67 --------------~~~~----------------------------~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 67 --------------IATV----------------------------PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp --------------EEEE----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred --------------EEEE----------------------------ECCCCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 2221 123389999999999987655 467999999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEE-
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL- 319 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l- 319 (450)
+++.+..+. +...+.+++|+|++..++++++.++.|++||+.+++ ....+.. ...+..++|+|++++|
T Consensus 105 ~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--------~~~~~~~-~~~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 105 SNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--------VINTVSV-GRSPKGIAVTPDGTKVY 173 (391)
T ss_dssp TTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEEEC-CSSEEEEEECTTSSEEE
T ss_pred CCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--------EEEEEec-CCCcceEEECCCCCEEE
Confidence 999888876 456789999998666556889999999999997765 3333333 3567999999999887
Q ss_pred EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEe---CCCeEEEeeCCCCccccC
Q 041325 320 YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS---SDNTIRIWRRSSSVTDHQ 394 (450)
Q Consensus 320 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~---~dg~v~iwd~~~~~~~~~ 394 (450)
++++.++.|++||+++++.. ..+ .+...+.+++|++ ++|++++ .++.|++||+.++
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~-------------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~----- 234 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVI-------------DTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN----- 234 (391)
T ss_dssp EEETTTTEEEEEETTTTEEE-------------EEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-----
T ss_pred EEeCCCCEEEEEECCCCeEE-------------EEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-----
Confidence 57788999999999987654 122 2455788899984 4777777 6899999999874
Q ss_pred CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEE-EEcccCCcEEEEEeC
Q 041325 395 KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV-YSGSLDCEIKIWQIR 450 (450)
Q Consensus 395 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~i~iw~l~ 450 (450)
+.+..+..|. .+.+++|+|+++ +| ++++.|+.|++||++
T Consensus 235 ---~~~~~~~~~~-~~~~~~~s~dg~-------------~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 235 ---KITARIPVGP-DPAGIAVTPDGK-------------KVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ---EEEEEEECCS-SEEEEEECTTSS-------------EEEEEETTTTEEEEEETT
T ss_pred ---eEEEEEecCC-CccEEEEccCCC-------------EEEEEcCCCCEEEEEECC
Confidence 5666676665 478999999998 55 788899999999974
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-29 Score=234.28 Aligned_cols=286 Identities=10% Similarity=0.121 Sum_probs=218.4
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.+..+. .+ ..+.+++| ++.++++++.|+.|++||+.+++........ .+.+|...|.+++|+++.
T Consensus 114 ~~~~~~~--~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 114 RFISRFK--TG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE-------KYKKKLGFVETISIPEHNEL 183 (433)
T ss_dssp EEEEEEE--CS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------HHHTTCCEEEEEEEGGGTEE
T ss_pred eEEEEEc--CC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------cccccCCceeEEEEcCCCEE
Confidence 5566665 44 44568888 5778888889999999999988866532111 135788999999998655
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.|+.|++||+++++. + ..+..|...+.+++|+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~----------------~---------------------------~~~~~~~~~~~~~~~~ 220 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAY----------------K---------------------------ATVDLTGKWSKILLYD 220 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCE----------------E---------------------------EEEECSSSSEEEEEEE
T ss_pred EEEECCCCEEEEEECCCceE----------------E---------------------------EEEcCCCCCeeEEEEc
Confidence 88999999999999987732 1 1223577789999999
Q ss_pred cCCCEEEEE-eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--------CCCcEEEEeCcchhhhc
Q 041325 220 SDGSLLYST-SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--------ADTKIKVWKKLRAALQV 290 (450)
Q Consensus 220 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~ 290 (450)
|++++++++ +.|+.|++||+.+++.+..+. ....+.+++|+|++. .+++++ .||.|++||+++++
T Consensus 221 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~--- 294 (433)
T 3bws_A 221 PIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK--- 294 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE---
T ss_pred CCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc---
Confidence 999988554 479999999999999888876 345699999998554 666666 58899999997765
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEE-EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVL-YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
....+ .+...+..++|+|+++.+ ++++.|+.|++||+.+++.+ ..+ .+...+.+++|++
T Consensus 295 -----~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-------------~~~-~~~~~~~~~~~s~ 354 (433)
T 3bws_A 295 -----LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-------------KSI-PVFDKPNTIALSP 354 (433)
T ss_dssp -----EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE-------------EEE-ECSSSEEEEEECT
T ss_pred -----EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE-------------EEe-cCCCCCCeEEEcC
Confidence 22222 456688999999999755 66688999999999987654 222 2556788999984
Q ss_pred C--eEEEEeC---------------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 370 N--LLFSGSS---------------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 370 ~--~l~s~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
+ ++++++. ||.|++||+.++ +.+..+.. ...+.+++|+|+++
T Consensus 355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~------------ 413 (433)
T 3bws_A 355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD--------TVKEFWEA-GNQPTGLDVSPDNR------------ 413 (433)
T ss_dssp TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT--------EEEEEEEC-SSSEEEEEECTTSC------------
T ss_pred CCCEEEEEecCCCccccccccccccceEEEEEECCCC--------cEEEEecC-CCCCceEEEcCCCC------------
Confidence 4 7777765 579999999874 55666665 45789999999998
Q ss_pred EEEEEcc-cCCcEEEEEeC
Q 041325 433 FLVYSGS-LDCEIKIWQIR 450 (450)
Q Consensus 433 ~~l~s~~-~Dg~i~iw~l~ 450 (450)
+|++++ .|+.|++|++.
T Consensus 414 -~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 414 -YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp -EEEEEETTTTEEEEEEET
T ss_pred -EEEEEECCCCeEEEEEec
Confidence 777766 59999999974
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-30 Score=237.73 Aligned_cols=282 Identities=16% Similarity=0.075 Sum_probs=197.2
Q ss_pred CceEEEEEeCCe-EEEEeCCCeEEEEEcCCCc---eeEEeccCcccccceeeeeeccCCCcceeEeeec---------Cc
Q 041325 128 DAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNT---SAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA---------NN 194 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 194 (450)
.++.+++|++++ ++.++.++.|++||+.+++ ................. ..+............ ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRN--TTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCcccccccccc--ccchhhccccccccccccccccCcCc
Confidence 478999999877 6666778999999999886 32221111000000000 000000000000000 00
Q ss_pred eE----EEeecceeeeecCCCceEEEEEccCCCEE-EEEeCCCcEEEEecC--CCeEEEEeec-ccccceEEEEEeecCC
Q 041325 195 YV----QVRRHKKCTWVHHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTS--DFRCLESVKN-AHDDAINAIVVSKSND 266 (450)
Q Consensus 195 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~ 266 (450)
.. ............|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+.. .+...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~- 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD- 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-
Confidence 00 00001112234678899999999999996 889899999999999 8887777752 456889999999854
Q ss_pred cEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC---CCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 267 GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD---GTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 267 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
.+|++++.+|.|++|++.+.+. .......+.+|...|++++|+|+ +++|++|+.|+.|++||+++++.+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--- 234 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPE----EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD--- 234 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCC----SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE---
T ss_pred CEEEEEeCCCcEEEEecCCccc----ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee---
Confidence 5899999999999999876551 11022356779999999999999 9999999999999999999876541
Q ss_pred CCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEec------------------
Q 041325 344 DDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE------------------ 404 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------------------ 404 (450)
..+.+|...|.+++|+ +++|++++.|+.|++||+.++ +++..+.
T Consensus 235 ---------~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (450)
T 2vdu_B 235 ---------KWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTG--------KNLSTFDYNSLIKPYLNDQHLAPPR 297 (450)
T ss_dssp ---------EECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTC--------CEEEEEECHHHHGGGCCTTSBC---
T ss_pred ---------eeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCC--------cEeeeecchhhhhhhhhhccccccc
Confidence 2256899999999997 669999999999999999875 3444443
Q ss_pred -------CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 405 -------GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 405 -------~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
.+...|.+++|+|+++ +|++++ .|+.|++|++
T Consensus 298 ~~~~~~~~~~~~v~~i~~~~~~~-------------~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 298 FQNENNDIIEFAVSKIIKSKNLP-------------FVAFFVEATKCIIILEM 337 (450)
T ss_dssp -------CBCCCEEEEEECSSSS-------------EEEEEETTCSEEEEEEE
T ss_pred ccccccccceEEEEEEEEeCCCC-------------EEEEEECCCCeEEEEEe
Confidence 2345789999999999 888888 8999999998
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=226.54 Aligned_cols=242 Identities=13% Similarity=0.182 Sum_probs=175.3
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
...|...|.+++|++++ |++|+.| .+++|+++..... ..
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~----------------~~---------------------- 55 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHI----------------MS---------------------- 55 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEE----------------EE----------------------
T ss_pred cccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCccee----------------ee----------------------
Confidence 46899999999999888 6666555 5899998865221 00
Q ss_pred cceeeeecCCCceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.+...+..+++.++++.+ ++++.|+.|++||..+++.+..+. +...|.++.+++ + .++++ .|+.|+
T Consensus 56 -------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~--~-~~~~~-~~~~i~ 122 (355)
T 3vu4_A 56 -------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSR--E-FIVVS-YGDVIS 122 (355)
T ss_dssp -------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECS--S-EEEEE-ETTEEE
T ss_pred -------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcC--C-EEEEE-EcCEEE
Confidence 111246778888888777 567788999999999999998886 667999999984 4 33333 478999
Q ss_pred EEeCcch-hhhccccchhhhhHhhcccceEEEEEcCCCCEEEE--eeCCCcEEEEEcCCCceeeeCCCCC--Cceee-ec
Q 041325 280 VWKKLRA-ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS--GACDRSILVWERDQGNYIVDGDDDS--GHMVL-KG 353 (450)
Q Consensus 280 vwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~-~~ 353 (450)
+||+.+. + .+..+.. ....+++++ .++++ |+.||.|++||+.+++......... ....+ ..
T Consensus 123 i~d~~~~~~--------~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~ 189 (355)
T 3vu4_A 123 VFKFGNPWK--------RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV 189 (355)
T ss_dssp EEESSTTCC--------BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCE
T ss_pred EEECCCCce--------eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE
Confidence 9999776 3 3333332 344566776 56665 6889999999999765221110000 00111 45
Q ss_pred cccCCccceEEEEEeC--CeEEEEeCCCe-EEEeeCCCCccccCCCceeEEEec-C-CCcceEEEEEEecCCCCCCCCCC
Q 041325 354 ALRGHTKAILCLAVVS--NLLFSGSSDNT-IRIWRRSSSVTDHQKGYSCLAVLE-G-HRRPVKCLTAVVDSDYSNRNSDH 428 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~--~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~~~~~~~~~~~~~~ 428 (450)
.+.+|...|++++|++ ++|++|+.||+ |++||++++ +++..+. + |...|.+++|+|++.
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--------~~~~~~~~g~h~~~v~~~~~s~~~~-------- 253 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--------VLVREFRRGLDRADVVDMKWSTDGS-------- 253 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--------CEEEEEECTTCCSCEEEEEECTTSC--------
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--------cEEEEEEcCCCCCcEEEEEECCCCC--------
Confidence 6789999999999985 49999999998 999999975 6777777 5 999999999999999
Q ss_pred CCceEEEEEcccCCcEEEEEeC
Q 041325 429 SSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 429 ~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.|++|++||++
T Consensus 254 -----~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 254 -----KLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp -----EEEEEETTCEEEEEESS
T ss_pred -----EEEEEECCCEEEEEEcc
Confidence 99999999999999974
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=235.91 Aligned_cols=232 Identities=7% Similarity=0.020 Sum_probs=164.6
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--------Ce--EEEEeCCCeEEEEE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--------DK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~--l~s~~~dg~i~iw~ 153 (450)
++.+|++|+.|++|+|||.++++........ .+.+|.+.|++++|+| +. |++|+.|++|++||
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~-------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLG-------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEEC-------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeec-------ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 5678999999999999999887654331111 1468999999999986 33 99999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEEeCCC
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYSTSWDR 232 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 232 (450)
+.++.. ...+..|...|.+++|+|++ .+|++++.|+
T Consensus 173 ~~~~~~-------------------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~ 209 (393)
T 4gq1_A 173 LTDEGP-------------------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNG 209 (393)
T ss_dssp EETTEE-------------------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCce-------------------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence 987621 22334688899999999976 5899999999
Q ss_pred cEEEEecCCCeEEEEee------------------------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 233 TFKIWRTSDFRCLESVK------------------------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~------------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
+|++||+.+++...... ..|...+.++.|.+.+...+++++.|+.+++||+..++
T Consensus 210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~- 288 (393)
T 4gq1_A 210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN- 288 (393)
T ss_dssp EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-
Confidence 99999998876443321 24667889999986566689999999999999997765
Q ss_pred hccccchhhhhHhhcccceEE------------------EEEcC--CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 289 QVNKKHSLVQTLEKHKSAVTA------------------LALST--DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~------------------l~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
....+..+...+.. ..++| ++.++++|+.||.|++||+.+++..
T Consensus 289 -------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~--------- 352 (393)
T 4gq1_A 289 -------DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN--------- 352 (393)
T ss_dssp ----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC---------
T ss_pred -------CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE---------
Confidence 22233333322222 23333 3446778889999999999987644
Q ss_pred eeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCC
Q 041325 349 MVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~ 387 (450)
.....|..+|.+++|++ ++||+++.+| +.+|.+.
T Consensus 353 ----~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 353 ----SIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ----EEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ----EEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 34567888999999995 4999998776 5555543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-28 Score=221.44 Aligned_cols=302 Identities=15% Similarity=0.185 Sum_probs=219.0
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
....+...++++++.+. +|. .+.+++| ++++| ++++.|+.|++||+.+++.... +..+. .+
T Consensus 13 ~v~v~d~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------------~~~~~-~v 76 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIP--VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------------VPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEEE--CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------------EECSS-SE
T ss_pred EEEEEECCCCeEEEEee--cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE------------EECCC-Cc
Confidence 34445556678888887 665 4899999 78776 6777999999999998876654 33333 89
Q ss_pred EEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 131 KSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 131 ~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
.+++|+++. | ++++.|+.|++||+.+++. +..+
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~----------------~~~~---------------------------- 112 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV----------------AGTV---------------------------- 112 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEE----------------EEEE----------------------------
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeE----------------EEEE----------------------------
Confidence 999999876 5 4555679999999998732 1111
Q ss_pred cCCCceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. ....+.+++|+|++..++++++.++.|++||++++
T Consensus 113 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 113 KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 133468999999999977 677889999999999999888876 34567999999866655678899999999999776
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+ ....+. +...+.+++|+|++++|++++ .++.|++||+.+++.+ ..+..|. .+.
T Consensus 191 ~--------~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-------------~~~~~~~-~~~ 247 (391)
T 1l0q_A 191 S--------VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-------------ARIPVGP-DPA 247 (391)
T ss_dssp E--------EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-------------EEEECCS-SEE
T ss_pred e--------EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-------------EEEecCC-Ccc
Confidence 5 222222 456789999999999999888 6899999999987654 2333333 468
Q ss_pred EEEEeC--CeE-EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE---EEEEEecCCCCCCCCCCCC-------
Q 041325 364 CLAVVS--NLL-FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK---CLTAVVDSDYSNRNSDHSS------- 430 (450)
Q Consensus 364 ~~~~~~--~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~---~l~~~~~~~~~~~~~~~~~------- 430 (450)
+++|++ ++| ++++.|+.|++||+.++ +.+..+..|..+.. .+.+.|++... ....++.
T Consensus 248 ~~~~s~dg~~l~~s~~~d~~v~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~fs~~~~~~~~ 318 (391)
T 1l0q_A 248 GIAVTPDGKKVYVALSFXNTVSVIDTATN--------TITATMAVGKNPYASGQFIGSIPVQPVY-PSADFKSNITSGYI 318 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTT--------EEEEEEECSSSEECCSSCEEECSSCCCC-CBCCEEESCCSSEE
T ss_pred EEEEccCCCEEEEEcCCCCEEEEEECCCC--------cEEEEEECCcCCCccceeeecccccccc-cccccccccccccc
Confidence 888884 455 67789999999999875 56666666655432 13333332210 0111111
Q ss_pred ---ceEEEEEcccCCcEEEEEe
Q 041325 431 ---TSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 431 ---~~~~l~s~~~Dg~i~iw~l 449 (450)
+...+...+.|..+++|++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 319 FLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp ETTCCEEEEECCBSCSEEEEEC
T ss_pred cccceEEEEeCCCCceEEEEEC
Confidence 1136778888999999996
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=225.42 Aligned_cols=226 Identities=19% Similarity=0.234 Sum_probs=179.9
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC----eEEEEeecccccceEEEEEeec-CCcEEEEEcCCCcEE
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF----RCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADTKIK 279 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~ 279 (450)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+. .|...|.+++|+|. +..+|++++.||.|+
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 34589999999999999999999999999999999876 4555666 79999999999985 256899999999999
Q ss_pred EEeCcchhhhc-cccchhhhhHhhcccceEEEEEcCC--CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 280 VWKKLRAALQV-NKKHSLVQTLEKHKSAVTALALSTD--GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 280 vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+||++.++... .........+..|...|.+++|+|+ +++|++++.||.|++||+++++.+.................
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99997754110 0111345666789999999999999 99999999999999999998765422111111111112233
Q ss_pred CCccceEEEEEe-----CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecC----CCCCCCCC
Q 041325 357 GHTKAILCLAVV-----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS----DYSNRNSD 427 (450)
Q Consensus 357 ~~~~~v~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~~~~~~~ 427 (450)
.|...+.+++|+ ++++++++.|+.+.+|+...+ ....+..+.+|...|++++|+|++ .
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~~~~~p~~~~~~~------- 231 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG------KLHVAAKLPGHKSLIRSISWAPSIGRWYQ------- 231 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS------CEEEEEECCCCCSCEEEEEECCCSSCSSE-------
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC------ceeeeeecCCCCcceeEEEECCCCCCcce-------
Confidence 678889999997 459999999999988877653 335578888999999999999998 6
Q ss_pred CCCceEEEEEcccCCcEEEEEeC
Q 041325 428 HSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 428 ~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.||.|++||++
T Consensus 232 ------~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 232 ------LIATGCKDGRIRIFKIT 248 (351)
T ss_dssp ------EEEEEETTSCEEEEEEE
T ss_pred ------EEEEEcCCCeEEEEeCC
Confidence 89999999999999974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=227.21 Aligned_cols=224 Identities=8% Similarity=0.012 Sum_probs=168.2
Q ss_pred CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 138 DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 138 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
..+++|+.||+|++||+++++... .+. ...|.++.
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~----------------~~~-----------------------------~~~v~~~~ 83 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTIT----------------TIT-----------------------------TPNPRTGG 83 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEE----------------EEE-----------------------------EECCCTTC
T ss_pred CEEEEECCCCcEEEEECCCCcEEE----------------EEe-----------------------------cCCceeee
Confidence 349999999999999999874211 110 12566677
Q ss_pred EccCCCEEEEEeCCCcEEEEecC---------CCeEEEEeecccccceEEEEEee--cCCcEEEEEcCCCcEEEEeCcch
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTS---------DFRCLESVKNAHDDAINAIVVSK--SNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
++|+ +++++.|++|++|+.. +++.+..+...|...|.+++++| ++. ++++++.||.|++||++++
T Consensus 84 ~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~ 159 (343)
T 3lrv_A 84 EHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDD 159 (343)
T ss_dssp CCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSS
T ss_pred eCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCC
Confidence 7777 8999999999999665 55555566556778899999998 544 8999999999999999876
Q ss_pred hhhccccchhhhhH-hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEE
Q 041325 287 ALQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILC 364 (450)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 364 (450)
+ ..... ..+...+.+++|+|++++|++|+.||.|++||+++++.+ ...+.. |...|++
T Consensus 160 ~--------~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~------------~~~~~~~h~~~v~~ 219 (343)
T 3lrv_A 160 S--------QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA------------SSRFPVDEEAKIKE 219 (343)
T ss_dssp C--------EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC------------CEECCCCTTSCEEE
T ss_pred c--------EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC------------ccEEeccCCCCEEE
Confidence 6 22222 234567999999999999999999999999999987633 124455 9999999
Q ss_pred EEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE--EEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 365 LAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK--CLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 365 ~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
++|+++ +|++++ |+.|++||+++... ...+..+..|...+. +++|+|+++ +|++++.
T Consensus 220 l~fs~~g~~l~s~~-~~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~l~~~s~ 280 (343)
T 3lrv_A 220 VKFADNGYWMVVEC-DQTVVCFDLRKDVG-----TLAYPTYTIPEFKTGTVTYDIDDSGK-------------NMIAYSN 280 (343)
T ss_dssp EEECTTSSEEEEEE-SSBEEEEETTSSTT-----CBSSCCCBC-----CCEEEEECTTSS-------------EEEEEET
T ss_pred EEEeCCCCEEEEEe-CCeEEEEEcCCCCc-----ceeecccccccccccceEEEECCCCC-------------EEEEecC
Confidence 999854 899999 55999999997521 111222223444444 699999999 8999888
Q ss_pred -CCcEEEEEe
Q 041325 441 -DCEIKIWQI 449 (450)
Q Consensus 441 -Dg~i~iw~l 449 (450)
|+.|++|++
T Consensus 281 ~d~~i~v~~~ 290 (343)
T 3lrv_A 281 ESNSLTIYKF 290 (343)
T ss_dssp TTTEEEEEEE
T ss_pred CCCcEEEEEE
Confidence 999999987
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=202.12 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=119.4
Q ss_pred eecCCCceEEEEEcc---CCCEEEEEeCCCcEEEEecCCCeEEEEeeccc--ccceEEEEEeecCCcEE-----------
Q 041325 206 WVHHVDTVSALALSS---DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH--DDAINAIVVSKSNDGFV----------- 269 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l----------- 269 (450)
+..|...+..++|++ ++.+|++++.|++|+|||+.+++++..+...+ ...+.+++|+|++. ++
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~~w~ 252 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCAKES 252 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC-------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEeccCCCcce
Confidence 346888999999999 78999999999999999999999999997322 34677889998543 43
Q ss_pred -EEEcCCCcEEEEeCcchhhhccccchhhhhH-----hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 270 -YTGSADTKIKVWKKLRAALQVNKKHSLVQTL-----EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 270 -~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
++|+.|++|++||..+++ .+..+ .+|...+.+..+ ++.++++|+.|++|+|||+.+++++
T Consensus 253 laSGs~D~tIklWd~~tgk--------~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l---- 318 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTTL--------SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCT---- 318 (356)
T ss_dssp -----CCEEEEEEETTTTE--------EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEE----
T ss_pred eeccCCCcEEEEEECCCCE--------EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEE----
Confidence 678899999999998765 22211 345544444444 4789999999999999999999866
Q ss_pred CCCCceeeeccccCCccceE-EEEEeCC--eEEEEeCCCeEEEeeC
Q 041325 344 DDSGHMVLKGALRGHTKAIL-CLAVVSN--LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~-~~~~~~~--~l~s~~~dg~v~iwd~ 386 (450)
..+.+|...+. +++|+++ +|++|+.|++|+|||+
T Consensus 319 ---------~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 319 ---------ALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---------EEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ---------EEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 56777877654 5889865 9999999999999985
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=214.91 Aligned_cols=251 Identities=16% Similarity=0.194 Sum_probs=195.4
Q ss_pred CCCCCccceeeeEEe---ecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 56 QAPAASEHQCSATLK---VKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~---~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
..+...+++.++.+. +.+|...|.+++| +++++++++.||.|++||+++++.... +..|...+
T Consensus 147 ~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~------------~~~~~~~~ 214 (433)
T 3bws_A 147 DVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT------------VDLTGKWS 214 (433)
T ss_dssp EEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE------------EECSSSSE
T ss_pred EEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE------------EcCCCCCe
Confidence 334444455555221 2389999999999 789999999999999999998876655 55788899
Q ss_pred EEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 131 KSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 131 ~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
.+++|+++. + ++++.|+.|++||+.+++ .+..+.
T Consensus 215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~----------------~~~~~~--------------------------- 251 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNWISEDISVIDRKTKL----------------EIRKTD--------------------------- 251 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTE----------------EEEECC---------------------------
T ss_pred eEEEEcCCCCEEEEEecCCCcEEEEECCCCc----------------EEEEec---------------------------
Confidence 999999876 5 455589999999998873 222221
Q ss_pred cCCCceEEEEEccCCCEEEEEe--------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 208 HHVDTVSALALSSDGSLLYSTS--------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
+...+.+++|+|+++++++++ .|+.|++||+.+++.+..+. +...+.+++|+|+++.++++++.++.|+
T Consensus 252 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 252 -KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp -CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred -CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 233589999999999999888 58899999999998877764 6668899999987666778889999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---------------CCcEEEEEcCCCceeeeCCC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---------------DRSILVWERDQGNYIVDGDD 344 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---------------dg~i~vwd~~~~~~~~~~~~ 344 (450)
+||+.+++ ....+. +...+.+++|+|++++|++++. ||.|++||+.+++.+
T Consensus 329 v~d~~~~~--------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~----- 394 (433)
T 3bws_A 329 VYDLKEKK--------VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK----- 394 (433)
T ss_dssp EEETTTTE--------EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE-----
T ss_pred EEECCCCc--------EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE-----
Confidence 99997665 233332 5677999999999999988876 579999999988755
Q ss_pred CCCceeeeccccCCccceEEEEEeC--CeEEEEe-CCCeEEEeeCC
Q 041325 345 DSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS-SDNTIRIWRRS 387 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~~ 387 (450)
..+.. ...+.+++|++ ++|++++ .|+.|++|+++
T Consensus 395 --------~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 --------EFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp --------EEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred --------EEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 22222 35688999984 4777766 49999999986
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-26 Score=209.45 Aligned_cols=272 Identities=13% Similarity=0.052 Sum_probs=201.3
Q ss_pred cceEEEEE---eCCEEEEee----CCC----cEEEecC--CCCCceeeeecCCCCcceeEEecCCCceEEEEEe------
Q 041325 76 SYIPSLAI---AGKLLYGGS----SNG----EIRAWNR--DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL------ 136 (450)
Q Consensus 76 ~~v~~~~~---d~~~l~tgs----~dg----~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------ 136 (450)
..+....| ..+++++|+ .|| .|++||+ .+++.+.. ..+.+|...+..+++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~~~ 132 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ----------NSYKVNKQWLRYAGHTASDEVF 132 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE----------EEEEECGGGHHHHHHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee----------eEEEcChhHHHHHHHHHHHHHH
Confidence 45555566 245777876 467 8999999 88775422 1256777777776665
Q ss_pred ----------CCeEEEEeCC------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 137 ----------GDKLFSAHQD------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 137 ----------~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+..++.++.+ +.|++||++...
T Consensus 133 ~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------------------------------ 170 (415)
T 2hqs_A 133 EKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------------------------------------------ 170 (415)
T ss_dssp HHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------------------------------------------
T ss_pred HHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC------------------------------------------
Confidence 3446666554 799999997541
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCC---cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDR---TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
...+..|...+.+++|+|+|++|++++.++ .|++||+.+++... +. .+...+.+++|+|++..++++++.++.
T Consensus 171 --~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~-~~~~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 171 --QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp --CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE-CCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred --CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee-cCCCcccCEEEcCCCCEEEEEEecCCC
Confidence 123345788999999999999999999875 99999999988754 43 577889999999976645557776665
Q ss_pred --EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCceeeeCCCCCCceeee
Q 041325 278 --IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 278 --i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
|++||+.+++ ...+..+...+.+++|+|||++|++++. ++ .|++||+.+++..
T Consensus 247 ~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~------------- 304 (415)
T 2hqs_A 247 LNLYVMDLASGQ---------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ------------- 304 (415)
T ss_dssp CEEEEEETTTCC---------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-------------
T ss_pred ceEEEEECCCCC---------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-------------
Confidence 9999987654 2344557788999999999999988876 44 6788898876422
Q ss_pred ccccCCccceEEEEEeC--CeEEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCC
Q 041325 353 GALRGHTKAILCLAVVS--NLLFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSD 427 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~--~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 427 (450)
.+..+...+.+++|++ ++|++++.+ +.|++||+.++ +. ..+..|. .+.+++|+|+++
T Consensus 305 -~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--------~~-~~l~~~~-~~~~~~~spdg~------- 366 (415)
T 2hqs_A 305 -RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--------GV-QVLSSTF-LDETPSLAPNGT------- 366 (415)
T ss_dssp -ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--------CE-EECCCSS-SCEEEEECTTSS-------
T ss_pred -EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC--------CE-EEecCCC-CcCCeEEcCCCC-------
Confidence 2344566788899985 477777764 58999999874 22 3455554 899999999999
Q ss_pred CCCceEEEEEcccCC---cEEEEEe
Q 041325 428 HSSTSFLVYSGSLDC---EIKIWQI 449 (450)
Q Consensus 428 ~~~~~~~l~s~~~Dg---~i~iw~l 449 (450)
+|++++.|+ .|++||+
T Consensus 367 ------~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 367 ------MVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp ------EEEEEEEETTEEEEEEEET
T ss_pred ------EEEEEEcCCCccEEEEEEC
Confidence 888888877 7999986
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-25 Score=202.54 Aligned_cols=273 Identities=14% Similarity=0.018 Sum_probs=203.3
Q ss_pred cCCCCC--ccceeeeEEeecCCCcceEEEEEe----------------CCEEEEeeCC------CcEEEecCCCCCceee
Q 041325 55 KQAPAA--SEHQCSATLKVKGNSSYIPSLAIA----------------GKLLYGGSSN------GEIRAWNRDPNNYVNI 110 (450)
Q Consensus 55 ~~~~~~--~~~~~~~~l~~~~h~~~v~~~~~d----------------~~~l~tgs~d------g~v~vw~~~~~~~~~~ 110 (450)
...+.. .+++++....+.+|...+..+++. +..++.++.+ +.|++||++.... ..
T Consensus 95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~ 173 (415)
T 2hqs_A 95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FV 173 (415)
T ss_dssp EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EE
T ss_pred EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EE
Confidence 345555 666777443344999888887763 7788877765 7999999975442 22
Q ss_pred eecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC---eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcc
Q 041325 111 TSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH---KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDR 185 (450)
Q Consensus 111 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (450)
+.+|...|.+++|+|++ |++++.|+ .|++||+.+++..
T Consensus 174 ------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~------------------------- 216 (415)
T 2hqs_A 174 ------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------------------------- 216 (415)
T ss_dssp ------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-------------------------
T ss_pred ------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-------------------------
Confidence 56788999999999887 88888875 9999999987321
Q ss_pred eeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE-EEeCCCc--EEEEecCCCeEEEEeecccccceEEEEEe
Q 041325 186 FTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDRT--FKIWRTSDFRCLESVKNAHDDAINAIVVS 262 (450)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 262 (450)
.+..|...+.+++|+|+|+.|+ +++.++. |.+||+.+++. ..+. .+...+.+++|+
T Consensus 217 -------------------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~s 275 (415)
T 2hqs_A 217 -------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWF 275 (415)
T ss_dssp -------------------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEEC
T ss_pred -------------------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-CCCCcccceEEC
Confidence 1234667899999999999887 6666654 99999998876 3444 577889999999
Q ss_pred ecCCcEEEEEcC-CC--cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---CcEEEEEcCCC
Q 041325 263 KSNDGFVYTGSA-DT--KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD---RSILVWERDQG 336 (450)
Q Consensus 263 ~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d---g~i~vwd~~~~ 336 (450)
|++. .|+.++. ++ .|.+||+.+++ ...+..+...+.+++|+|+|++|++++.+ ..|++||+.++
T Consensus 276 pdg~-~l~~~s~~~g~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 276 PDSQ-NLAFTSDQAGRPQVYKVNINGGA---------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp TTSS-EEEEEECTTSSCEEEEEETTSSC---------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCCC-EEEEEECCCCCcEEEEEECCCCC---------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 9655 5555544 55 67777876654 12233355678899999999999988764 58999999987
Q ss_pred ceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC---eEEEeeCCCCccccCCCceeEEEecCCCcceE
Q 041325 337 NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN---TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK 411 (450)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~ 411 (450)
+.. .+..+. .+.+++|++ ++|++++.++ .|++||+.. .....+..|.+.|.
T Consensus 346 ~~~--------------~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g---------~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 346 GVQ--------------VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG---------RFKARLPATDGQVK 401 (415)
T ss_dssp CEE--------------ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS---------CCEEECCCSSSEEE
T ss_pred CEE--------------EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC---------CcEEEeeCCCCCCc
Confidence 532 233343 788899985 4788877776 799999874 45677889999999
Q ss_pred EEEEEecCC
Q 041325 412 CLTAVVDSD 420 (450)
Q Consensus 412 ~l~~~~~~~ 420 (450)
+++|+|...
T Consensus 402 ~~~~~~~~~ 410 (415)
T 2hqs_A 402 FPAWSPYLH 410 (415)
T ss_dssp EEEECCCCC
T ss_pred CCccccccc
Confidence 999999865
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=207.55 Aligned_cols=284 Identities=13% Similarity=0.165 Sum_probs=211.0
Q ss_pred eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEEeCCe--EEEEeCCCeEEEEEc
Q 041325 78 IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKI 154 (450)
Q Consensus 78 v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~ 154 (450)
+..+..++.++++++.|++|.+||..+++++.. +. ++. +..++|++++ |++++.|++|++||+
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~------------i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV------------IDTGYA--VHISRMSASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEE------------EECSTT--EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEE------------EecCcc--cceEEECCCCCEEEEECCCCeEEEEEC
Confidence 333333788999999999999999999987665 33 333 8899999887 999999999999999
Q ss_pred --CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc----CCCEEEEE
Q 041325 155 --DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS----DGSLLYST 228 (450)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~ 228 (450)
.+. ..+..++ +...+..++|+| +|++++++
T Consensus 208 ~~~t~----------------~~~~~i~----------------------------~g~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 208 WAKEP----------------TKVAEIK----------------------------IGIEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp TSSSC----------------EEEEEEE----------------------------CCSEEEEEEECCSTTCTTTEEEEE
T ss_pred cCCCC----------------cEEEEEe----------------------------cCCCcceEEeCCCcCCCCCEEEEE
Confidence 555 2222221 334678999999 99999988
Q ss_pred e-CCCcEEEEecCCCeEEEEeecc---------c-ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 229 S-WDRTFKIWRTSDFRCLESVKNA---------H-DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 229 ~-~dg~i~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
+ .++.|.+||..+++++..+... | ...+..+.++|++..++++...++.|.+||+.+.+.. .+
T Consensus 244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l------~~ 317 (543)
T 1nir_A 244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL------TV 317 (543)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC------EE
T ss_pred EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc------ee
Confidence 8 4899999999999998887621 2 2368899999977778899999999999998765410 01
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCeEE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLF 373 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 373 (450)
..+ .+...+..++|+|+|++|++++ .+++|.+||..+++.+..+. .....|.+....+ ++ +..++
T Consensus 318 ~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~---------~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 318 TSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD---------VGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp EEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE---------CSSSBCCTTCEEE-EETTTEEEEE
T ss_pred EEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec---------cCCCCCCCCCccc-CCCCCccEEE
Confidence 122 2456678899999999876654 58999999999988652111 1112354444343 23 23666
Q ss_pred EEe-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-------cCCcEE
Q 041325 374 SGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-------LDCEIK 445 (450)
Q Consensus 374 s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-------~Dg~i~ 445 (450)
++. .|++|.+||+.+... ....++++..+.+|...+..++++|+++ +|++++ .+++|.
T Consensus 387 s~~~~d~~V~v~d~~~~~~-~~~~~~~v~~l~~~g~~~~~v~~~pdg~-------------~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNH-PQYAWKKVAELQGQGGGSLFIKTHPKSS-------------HLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEBSSSSEEEEEECCTTTC-TTTBTSEEEEEECSCSCCCCEECCTTCC-------------EEEECCTTCSSHHHHTCEE
T ss_pred eccCCCceEEEEEeCCCCC-chhcCeEEEEEEcCCCCceEEEcCCCCC-------------cEEEecCCCCCcccCceEE
Confidence 665 689999999986211 0223689999999999999999999999 899887 378999
Q ss_pred EEEeC
Q 041325 446 IWQIR 450 (450)
Q Consensus 446 iw~l~ 450 (450)
+||++
T Consensus 453 v~d~~ 457 (543)
T 1nir_A 453 VFDLK 457 (543)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99974
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=198.48 Aligned_cols=314 Identities=12% Similarity=0.074 Sum_probs=212.3
Q ss_pred CCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecC--CCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 56 QAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNR--DPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
......++++++++. .+.. +.+++| ||++|++++.|+.|++||+ .+++.+.. +. +...+.
T Consensus 162 ~v~D~~t~~~~~~i~--~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~------------i~-~g~~p~ 225 (543)
T 1nir_A 162 ALVDGDSKKIVKVID--TGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE------------IK-IGIEAR 225 (543)
T ss_dssp EEEETTTCCEEEEEE--CSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE------------EE-CCSEEE
T ss_pred EEEECCCceEEEEEe--cCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE------------Ee-cCCCcc
Confidence 344556778888887 3333 888888 8999999999999999999 66654443 22 455789
Q ss_pred EEEEeC----Ce--EEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 132 SLVVLG----DK--LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 132 ~l~~~~----~~--l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
.++|+| ++ +++++ .+++|.+||..+.+. +..++.... ...
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~----------------~~~i~~~g~-----------------~~~ 272 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP----------------KQIVSTRGM-----------------TVD 272 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE----------------EEEEECCEE-----------------CSS
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc----------------ceeecccCc-----------------ccC
Confidence 999998 66 77776 489999999988743 222221000 000
Q ss_pred eeecC-CCceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 205 TWVHH-VDTVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 205 ~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
....| ...+..+.+++++.. +++...++.|.+||+.+.+.+......+...+..+.|+|++..+++++..++.|.+||
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 00012 237889999997654 5566788999999998876544222135667889999997664566677789999999
Q ss_pred CcchhhhccccchhhhhHhh----cccceEEEEEcCC-CCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 283 KLRAALQVNKKHSLVQTLEK----HKSAVTALALSTD-GTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~~~~-~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
..+++ ++..+.. |......+ ++|+ +.+++++. .|++|.+||+.+.+. ..........+.
T Consensus 353 ~~tg~--------l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~------~~~~~~~v~~l~ 417 (543)
T 1nir_A 353 SKDRR--------LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH------PQYAWKKVAELQ 417 (543)
T ss_dssp TTTTE--------EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC------TTTBTSEEEEEE
T ss_pred CCCCe--------EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC------chhcCeEEEEEE
Confidence 98876 3333321 43333333 4676 66667765 589999999987210 001122346777
Q ss_pred CCccceEEEEEeCC--eEEEEe-------CCCeEEEeeCCCCccccCCCceeEEE-----ecCCCcceEEEEEEecCCCC
Q 041325 357 GHTKAILCLAVVSN--LLFSGS-------SDNTIRIWRRSSSVTDHQKGYSCLAV-----LEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 357 ~~~~~v~~~~~~~~--~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~ 422 (450)
.|...+..+.++++ +|++++ .+++|.+||+.+.. ...+.+.. +..+...+..++|+|+++
T Consensus 418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~-- 491 (543)
T 1nir_A 418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGD-- 491 (543)
T ss_dssp CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT----SCCEEECHHHHHCCCSSCCEEEEEEECSSSS--
T ss_pred cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC----CCeEEeechhhcccCCCCCceEeccCCCCCC--
Confidence 78788888888855 888877 37899999999852 11111100 245678899999999999
Q ss_pred CCCCCCCCceEEEEEc-----ccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVYSG-----SLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~-----~~Dg~i~iw~l~ 450 (450)
.++.+ +.|+.|.|||.+
T Consensus 492 -----------~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 492 -----------EVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp -----------EEEEEEECCTTSCCEEEEEETT
T ss_pred -----------EEEEEeecCCCCCCeEEEEECC
Confidence 55543 358999999964
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=181.44 Aligned_cols=275 Identities=11% Similarity=0.124 Sum_probs=185.3
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC-CCeEEEEEcCCCceeE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ-DHKIRVWKIDNNTSAY 161 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i~iw~~~~~~~~~ 161 (450)
+..+++++.++.|++||..+++.... ...+...+ .++|++++ +++++. ++.|.+||..+++..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~- 75 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQ------------ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK- 75 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEE------------EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-
T ss_pred CEEEEEecCCCeEEEEeCcccceeee------------EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-
Confidence 44577888899999999999887665 33344566 99999876 555554 899999999877320
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC---cEEEEe
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR---TFKIWR 238 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd 238 (450)
...+..+..+..+++|+|++++++++..++ .|.+||
T Consensus 76 -----------------------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d 114 (331)
T 3u4y_A 76 -----------------------------------------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYS 114 (331)
T ss_dssp -----------------------------------------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEE
T ss_pred -----------------------------------------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEE
Confidence 111223444555599999999999655553 899999
Q ss_pred cCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc-EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
+.+++.+..+. ......+++|+|+++.++++...++. |.+|++.......... ...+ .....+..++|+|+|+
T Consensus 115 ~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~---~~~~-~~~~~~~~~~~spdg~ 188 (331)
T 3u4y_A 115 FLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG---QEFI-SGGTRPFNITFTPDGN 188 (331)
T ss_dssp TTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE---EEEE-CSSSSEEEEEECTTSS
T ss_pred CCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC---Cccc-cCCCCccceEECCCCC
Confidence 99999888776 34567999999976656666677788 9999986533110000 1111 2345578999999999
Q ss_pred EEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEE-EEeCCCeEEEeeCCCCcccc
Q 041325 318 VLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLF-SGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 318 ~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-s~~~dg~v~iwd~~~~~~~~ 393 (450)
+++++ ..++.|++||+.+++.. .....+. ....+..++|++ ++++ +...++.|.+||..++..
T Consensus 189 ~l~v~~~~~~~v~v~d~~~~~~~----------~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-- 255 (331)
T 3u4y_A 189 FAFVANLIGNSIGILETQNPENI----------TLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-- 255 (331)
T ss_dssp EEEEEETTTTEEEEEECSSTTSC----------EEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE--
T ss_pred EEEEEeCCCCeEEEEECCCCccc----------ceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce--
Confidence 66554 46899999999987651 0012222 224556788874 4554 444678899999987521
Q ss_pred CCCceeEEEecCC----Ccc---eEEEEEEecCCCCCCCCCCCCceEEE-EEcccCCcEEEEEeC
Q 041325 394 QKGYSCLAVLEGH----RRP---VKCLTAVVDSDYSNRNSDHSSTSFLV-YSGSLDCEIKIWQIR 450 (450)
Q Consensus 394 ~~~~~~~~~~~~h----~~~---v~~l~~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~i~iw~l~ 450 (450)
..+..+..+ ... ...++|+|+++ +| +++..++.|.+||+.
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------------~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 256 ----SFVKSFGHGLLIDPRPLFGANQMALNKTET-------------KLFISANISRELKVFTIS 303 (331)
T ss_dssp ----EEEEEEECCCCCCCGGGTTCCCEEECTTSS-------------EEEEEETTTTEEEEEETT
T ss_pred ----eeecccccccccCCCCcccccceEECCCCC-------------EEEEecCCCCcEEEEEec
Confidence 113332222 222 35689999998 55 555567799999974
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-22 Score=179.61 Aligned_cols=276 Identities=12% Similarity=0.195 Sum_probs=181.3
Q ss_pred EEEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC-CeEEEEEcC--CCcee
Q 041325 87 LLYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD-HKIRVWKID--NNTSA 160 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-g~i~iw~~~--~~~~~ 160 (450)
++++++.|+.|++|+++. +..... ....|...+.+++|++++ |++++.+ +.|.+|+++ ++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~- 74 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLT-----------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL- 74 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-----------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEe-----------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-
Confidence 455557899999999863 322111 123567789999999876 7777776 999999998 3321
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC-CCcEEEEec
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW-DRTFKIWRT 239 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 239 (450)
..+.. +. ....+..++|+|+++++++++. ++.|.+||+
T Consensus 75 -------------~~~~~---------------------------~~-~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 75 -------------TFAAE---------------------------SA-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp -------------EEEEE---------------------------EE-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred -------------eeccc---------------------------cc-cCCCCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 11111 11 1226789999999998877664 889999999
Q ss_pred C---CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-hhhhccccchhhh--hHh-hcccceEEEEE
Q 041325 240 S---DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-AALQVNKKHSLVQ--TLE-KHKSAVTALAL 312 (450)
Q Consensus 240 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~--~~~-~~~~~i~~l~~ 312 (450)
. ..+....+. ....+.+++|+|++..+++++..++.|++||+.+ ++.. ... ... .....+..++|
T Consensus 114 ~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 1ri6_A 114 EDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV------AQDPAEVTTVEGAGPRHMVF 185 (343)
T ss_dssp ETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE------EEEEEEEECSTTCCEEEEEE
T ss_pred CCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee------eecccccccCCCCCcceEEE
Confidence 4 334444443 3456889999986654444444899999999976 3310 000 111 12346788999
Q ss_pred cCCCCEEEEee-CCCcEEEEEcCC--CceeeeCCCCCCceeeecccc-C--CccceEEEEEeCC--eEE-EEeCCCeEEE
Q 041325 313 STDGTVLYSGA-CDRSILVWERDQ--GNYIVDGDDDSGHMVLKGALR-G--HTKAILCLAVVSN--LLF-SGSSDNTIRI 383 (450)
Q Consensus 313 ~~~~~~l~~g~-~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~--~l~-s~~~dg~v~i 383 (450)
+|+++++++++ .++.|.+|++.. ++... ......+. + ....+.+++|+++ +|+ ++..++.|++
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIEC--------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEE--------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--------EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 99999776554 789999999963 32110 00111111 1 1345667888844 555 5668999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
||+... ....+.+..+..+.. +..++|+|+++ +|++++ .|+.|.+|++
T Consensus 258 ~d~~~~----~~~~~~~~~~~~~~~-~~~~~~s~dg~-------------~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 258 FSVSED----GSVLSKEGFQPTETQ-PRGFNVDHSGK-------------YLIAAGQKSHHISVYEI 306 (343)
T ss_dssp EEECTT----SCCEEEEEEEECSSS-CCCEEECTTSS-------------EEEEECTTTCEEEEEEE
T ss_pred EEEcCC----CCceEEeeeecCCCc-cceEEECCCCC-------------EEEEecCCCCeEEEEEE
Confidence 999831 112345555555544 88999999998 676666 7899999965
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-23 Score=201.85 Aligned_cols=286 Identities=10% Similarity=0.087 Sum_probs=197.6
Q ss_pred CcceEEEEE--eCCEEEEeeC-CC-----cEEEecCCCCCceeeeecCCCCc--ceeEE----------ecCCCceEEEE
Q 041325 75 SSYIPSLAI--AGKLLYGGSS-NG-----EIRAWNRDPNNYVNITSTDVGDH--ANVVA----------TGNGDAVKSLV 134 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~-dg-----~v~vw~~~~~~~~~~~~~~~~~~--~~~~~----------~~h~~~v~~l~ 134 (450)
...|.+++| ||++|++++. || .|++||+.+++............ ..+.. ......|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999 8999999998 88 89999999988655532111000 00000 00013488999
Q ss_pred EeCCe--EEEEeCCCeEEEEEcCCC---ceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 135 VLGDK--LFSAHQDHKIRVWKIDNN---TSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 135 ~~~~~--l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
|+||+ |++++. +.|++||+.++ .. ..+..|
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--------------------------------------------~~l~~~ 150 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV--------------------------------------------RQLTHG 150 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC--------------------------------------------CBCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE--------------------------------------------EEcccC
Confidence 99987 666665 99999999876 21 112246
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc----------------eEEEEEeecCCcEEEEEc
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA----------------INAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~ 273 (450)
...+..++|+|||++|+.++ ++.|.+||+.+++...... .+... +..+.|+|++. .|++++
T Consensus 151 ~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~ 227 (741)
T 2ecf_A 151 EGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYAR 227 (741)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEE
T ss_pred CcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc-CCccceeccccceeeeeccccccceEECCCCC-EEEEEE
Confidence 66899999999999999887 5699999999887665443 22221 47899999655 666665
Q ss_pred CCC---------------------------------cEEEEeCcc-hhhhccccchhhhhHhhcccceEEEEEcCCCCEE
Q 041325 274 ADT---------------------------------KIKVWKKLR-AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 274 ~dg---------------------------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
.|+ .|.+||+.+ ++.. .+.....+...+..++| |||++|
T Consensus 228 ~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~-pDg~~l 300 (741)
T 2ecf_A 228 IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ------WIDLGKEQDIYLARVNW-RDPQHL 300 (741)
T ss_dssp EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE------EECCCSCSSEEEEEEEE-EETTEE
T ss_pred EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceE------EecCCCCcceEEEEEEe-CCCCEE
Confidence 554 788899876 5411 01101136678999999 999999
Q ss_pred EEeeC-----CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc----ceEEEEEe--CCeEEEEeCCCeEEEeeCCC
Q 041325 320 YSGAC-----DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK----AILCLAVV--SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 320 ~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 388 (450)
++++. +..|++||+.+++... .+..+.. .+..++|+ ++++++++.||.++||.+..
T Consensus 301 ~~~~~~~~~~~~~i~~~d~~~g~~~~-------------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 301 SFQRQSRDQKKLDLVEVTLASNQQRV-------------LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp EEEEEETTSSEEEEEEEETTTCCEEE-------------EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred EEEEecccCCeEEEEEEECCCCceEE-------------EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 97754 5679999999876541 1122221 34567777 44888999999888887763
Q ss_pred CccccCCCceeEEEecCCCcceEEE-EEEecCCCCCCCCCCCCceEEE-EEcccCC--cEEEEEe
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCL-TAVVDSDYSNRNSDHSSTSFLV-YSGSLDC--EIKIWQI 449 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg--~i~iw~l 449 (450)
. .. ...+..|...|..+ .|+|+++ .| ++++.|+ .++||++
T Consensus 368 ~-------~~-~~~l~~~~~~v~~~~~~s~dg~-------------~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 368 K-------GK-AAALTHGNWSVDELLAVDEKAG-------------LAYFRAGIESARESQIYAV 411 (741)
T ss_dssp S-------SC-EEESCCSSSCEEEEEEEETTTT-------------EEEEEECSSCTTCBEEEEE
T ss_pred C-------CC-eeeeeecceEEEeEeEEeCCCC-------------EEEEEEeCCCCceEEEEEE
Confidence 1 13 56677788888887 5999998 55 5566666 8999986
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=207.00 Aligned_cols=370 Identities=13% Similarity=0.054 Sum_probs=241.8
Q ss_pred cccCCcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcce-------E
Q 041325 7 FPMPCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYI-------P 79 (450)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v-------~ 79 (450)
++.-...+..+.|+|++..++..+....- .............++ .+++. +|...+ .
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~--------------~~~~~i~~~d~~~g~-~~~lt--~~~~~~~~~~~~~~ 110 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSS--------------LNTADLYFYNGENGE-IKRIT--YFSGKSTGRRMFTD 110 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTT--------------CCEEEEEEEETTTTE-EEECC--CCCEEEETTEECSE
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccC--------------CCCCeEEEEECCCCC-eEEcc--cCCCcccccccccc
Confidence 33333456788899999888875433100 000111111222223 45566 888888 8
Q ss_pred EEEE--eCCEEEEeeCC------CcEEEecCCCCCceeeeecCC------------------------------------
Q 041325 80 SLAI--AGKLLYGGSSN------GEIRAWNRDPNNYVNITSTDV------------------------------------ 115 (450)
Q Consensus 80 ~~~~--d~~~l~tgs~d------g~v~vw~~~~~~~~~~~~~~~------------------------------------ 115 (450)
+++| ||+++++++.+ ..|++|++.+++.........
T Consensus 111 ~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~ 190 (1045)
T 1k32_A 111 VAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE 190 (1045)
T ss_dssp EEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEE
T ss_pred cccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEE
Confidence 9999 78888888754 358888887665432211100
Q ss_pred -CCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCce-eEEeccCcccccceeeeeeccCCCcceeEeeec
Q 041325 116 -GDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTS-AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA 192 (450)
Q Consensus 116 -~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (450)
.......+.+|...+.++.|+++. +++++.|+.+++|.++.... ........ ..... .+.. ++...+. ..
T Consensus 191 ~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~----~~~~~-~~Sp-DG~~la~-~~ 263 (1045)
T 1k32_A 191 VNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT----DYYPR-HLNT-DGRRILF-SK 263 (1045)
T ss_dssp EETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC----SSCEE-EEEE-SSSCEEE-EE
T ss_pred CCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC----Cccee-eEcC-CCCEEEE-Ee
Confidence 001122346889999999999988 56777889999998764221 11111110 00111 1111 1111111 12
Q ss_pred CceEEEeeccee---ee-----------ecCCCceEEEEEc-cCCCEEEEEeCCCcEEEEecCCCeEEEEeeccccc-ce
Q 041325 193 NNYVQVRRHKKC---TW-----------VHHVDTVSALALS-SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDD-AI 256 (450)
Q Consensus 193 ~~~~~~~~~~~~---~~-----------~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v 256 (450)
+..+.++..... .+ ..|...+.+++|+ |+|++++.++ ++.|.+|++..++... +. .+.. .+
T Consensus 264 ~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-~~~~~~~ 340 (1045)
T 1k32_A 264 GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-EPLRIRY 340 (1045)
T ss_dssp TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-CCSCEEE
T ss_pred CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-CCCcceE
Confidence 333333321111 11 1244578999999 9999999888 8899999998877554 43 4555 88
Q ss_pred EEEEEeecCCcEEEEEcCCCcEE-EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 257 NAIVVSKSNDGFVYTGSADTKIK-VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
..++|+ + +..++.++.++.+. +||+..++ . ..+..+...+..++|+|||++|++++.++.|++||+.+
T Consensus 341 ~~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~~--------~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 341 VRRGGD-T-KVAFIHGTREGDFLGIYDYRTGK--------A-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp EEECSS-S-EEEEEEEETTEEEEEEEETTTCC--------E-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EeeeEc-C-CCeEEEEECCCceEEEEECCCCC--------c-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 999998 4 44677777788888 88986544 1 12225678899999999999999999999999999998
Q ss_pred CceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCC----------eEEEeeCCCCccccCCCceeEEEe
Q 041325 336 GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDN----------TIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg----------~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
++.. .....|...+.+++|+++ +|++++.++ .|++||+.++ + ...+
T Consensus 410 g~~~-------------~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------~-~~~l 467 (1045)
T 1k32_A 410 GKPT-------------VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------K-IFAA 467 (1045)
T ss_dssp CCEE-------------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------E-EEEC
T ss_pred CceE-------------EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--------c-EEEe
Confidence 7644 334467888889999854 787777654 8999999864 3 5667
Q ss_pred cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 404 EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..|...+..++|+|+++ +|+.++.++..++|+.
T Consensus 468 ~~~~~~~~~~~~spdG~-------------~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 468 TTENSHDYAPAFDADSK-------------NLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp SCSSSBEEEEEECTTSC-------------EEEEEESCCCCCEECS
T ss_pred eCCCcccCCceEcCCCC-------------EEEEEecccCCcCcch
Confidence 78888899999999999 8999998888888763
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=178.27 Aligned_cols=254 Identities=12% Similarity=0.065 Sum_probs=181.6
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCC-CceeEEeccC
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDN-NTSAYYSTSG 166 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~-~~~~~~~~~~ 166 (450)
+++.|+.|++||+.+++... +..|...|.+++|+|++ |++++ ++.|++||+.+ ++..
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~------ 76 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE------ 76 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE------
T ss_pred CCCcceeEEEEeCCCCceee-------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce------
Confidence 35678999999998877543 34678899999999887 55554 88999999988 6321
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC-CCceEEEEEccCCCEEEEEe--CCCcEEEE--ecCC
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH-VDTVSALALSSDGSLLYSTS--WDRTFKIW--RTSD 241 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~iw--d~~~ 241 (450)
... ..+ ...+.+++|+|++++|++++ .++...|| +..+
T Consensus 77 ----------~~~---------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 119 (297)
T 2ojh_A 77 ----------KVD---------------------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG 119 (297)
T ss_dssp ----------ECC---------------------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred ----------Eec---------------------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence 110 122 35788999999999999998 33455555 4455
Q ss_pred CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
++ ...+. ....+..++|+|++..+++++..++.+++|+++... . ....+..+...+.+++|+|++++|+.
T Consensus 120 ~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----~---~~~~~~~~~~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 120 GT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----G---VETRLTHGEGRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----C---CEEECCCSSSCEEEEEECTTSSEEEE
T ss_pred Cc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCC----C---cceEcccCCCccccceECCCCCEEEE
Confidence 44 33443 334588899999766556688889999999864322 0 12334456678999999999998887
Q ss_pred ee-CCCcEEEEEcC-CCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCC-----------CeEEEeeC
Q 041325 322 GA-CDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSD-----------NTIRIWRR 386 (450)
Q Consensus 322 g~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d-----------g~v~iwd~ 386 (450)
++ .++.+++|++. .+..+ ..+..|...+.++.|++ ++|++++.+ +.|++||+
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSV-------------ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EECTTSSCEEEEEETTSSCE-------------EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred EecCCCCccEEEECCCCCCc-------------EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 66 58999999986 33222 34556677888899985 477777765 56999999
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCC
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 442 (450)
.++ ....+..+.+|...+.+++|+|+++ +|++++.|.
T Consensus 257 ~~~------~~~~~~~~~~~~~~~~~~~~spdg~-------------~l~~~~~~~ 293 (297)
T 2ojh_A 257 DGG------NVETLFDLFGGQGTMNSPNWSPDGD-------------EFAYVRYFP 293 (297)
T ss_dssp TSC------SCEEEEEEEESTTTSCSCCBCTTSS-------------EEEEEEECC
T ss_pred CCC------CceeeeccCCCCcccccceECCCCC-------------EEEEEEecc
Confidence 864 2344555667888999999999999 787777654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=197.45 Aligned_cols=288 Identities=10% Similarity=0.067 Sum_probs=189.4
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCC---CceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN---NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
..|.+++| ||++|++++. +.|++||+.++ +... +..|...+..++|+||+ |+.++ ++.
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------l~~~~~~~~~~~~SPDG~~la~~~-~~~ 173 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------LTHGEGFATDAKLSPKGGFVSFIR-GRN 173 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------CCCSSSCEEEEEECTTSSEEEEEE-TTE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------cccCCcccccccCCCCCCEEEEEe-CCc
Confidence 34788888 8999999987 99999999887 4322 34677789999999988 66555 679
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+.+++........ ..... ..............+..++|+|||++|+++
T Consensus 174 i~~~d~~~g~~~~~~~~~----------------~~~~~-----------~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~ 226 (741)
T 2ecf_A 174 LWVIDLASGRQMQLTADG----------------STTIG-----------NGIAEFVADEEMDRHTGYWWAPDDSAIAYA 226 (741)
T ss_dssp EEEEETTTTEEEECCCCC----------------CSSEE-----------ESCCCHHHHHHSCCCCSEEECTTSSCEEEE
T ss_pred EEEEecCCCCEEEeccCC----------------cccee-----------ccccceeeeeccccccceEECCCCCEEEEE
Confidence 999999887432111100 00000 000000000011235789999999999998
Q ss_pred eCCC---------------------------------cEEEEecCC-CeEEEEeec-ccccceEEEEEeecCCcEEEEEc
Q 041325 229 SWDR---------------------------------TFKIWRTSD-FRCLESVKN-AHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 229 ~~dg---------------------------------~i~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
+.|+ .|.+||+.+ ++....... .+...+..++| |++..+++++.
T Consensus 227 ~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~ 305 (741)
T 2ecf_A 227 RIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQ 305 (741)
T ss_dssp EEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEE
T ss_pred EEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEe
Confidence 7665 789999988 775544331 36778999999 97664443332
Q ss_pred ----CCCcEEEEeCcchhhhccccchhhhhHhhccc----ceEEEEEcCCCCEEEEeeCCCcEEEEEcC-CCceeeeCCC
Q 041325 274 ----ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS----AVTALALSTDGTVLYSGACDRSILVWERD-QGNYIVDGDD 344 (450)
Q Consensus 274 ----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~i~~l~~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~ 344 (450)
.+..|++||+.+++ ....+..+.. .+..++|+|||+++++++.||.+++|.+. +++ .
T Consensus 306 ~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~----- 371 (741)
T 2ecf_A 306 SRDQKKLDLVEVTLASNQ--------QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-A----- 371 (741)
T ss_dssp ETTSSEEEEEEEETTTCC--------EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-E-----
T ss_pred cccCCeEEEEEEECCCCc--------eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-e-----
Confidence 36789999997765 2222222222 34688999999999999999988888765 222 2
Q ss_pred CCCceeeeccccCCccceEEE-EEeCC--eE-EEEeCCC--eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 345 DSGHMVLKGALRGHTKAILCL-AVVSN--LL-FSGSSDN--TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~-~~~~~--~l-~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
..+..|...+..+ .|+++ .| ++++.++ .+++|++... ......+.. ...+..++|+|+
T Consensus 372 --------~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~-------g~~~~~l~~-~~~~~~~~~spd 435 (741)
T 2ecf_A 372 --------AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ-------GGQPQRLSK-APGMHSASFARN 435 (741)
T ss_dssp --------EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT-------CCCCEECCC-SCSEEEEEECTT
T ss_pred --------eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC-------CCCeeeccc-CCCceEEEECCC
Confidence 3455667777776 47744 45 5566665 8999998642 122344444 566889999999
Q ss_pred CCCCCCCCCCCCceEEEEEcccC----CcEEEEEe
Q 041325 419 SDYSNRNSDHSSTSFLVYSGSLD----CEIKIWQI 449 (450)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~s~~~D----g~i~iw~l 449 (450)
++ +|+....+ +.+.+|++
T Consensus 436 g~-------------~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 436 AS-------------VYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SS-------------EEEEEEEETTEEEEEEEEET
T ss_pred CC-------------EEEEEecCCCCCCeEEEEEc
Confidence 98 55554333 35777764
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=174.92 Aligned_cols=266 Identities=9% Similarity=0.099 Sum_probs=184.1
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC-ceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD-AVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
++|++++.++.|++||+.+++...... .++.. .+..++|++++ ++++..++.|.+||+.+++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-----------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-----------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE-
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-----------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE-
Confidence 578999999999999999887655411 12222 47889999876 456666899999999887432
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe------------
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------------ 229 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------ 229 (450)
..+..... ..|...+.+++|+|++++++++.
T Consensus 70 ---------------~~~~~~~~----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 70 ---------------GRIDLSTP----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp ---------------EEEECCBT----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ---------------eeEEcCCc----------------------ccccccccceEECCCCCEEEEEecccccccccccc
Confidence 11110000 00122466789999999988886
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.++.|.+||+.+++.+..+. ....+.+++|+|++. +++++ ++.|.+||+.+++. ...+..+. ....
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~--------~~~~~~~~-~~~~ 178 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFE--APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAGTL--------VEDKPIQS-WEAE 178 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTTEE--------EEEECSTT-TTTT
T ss_pred cCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCCcE--------eeeeeccc-cCCC
Confidence 57999999999998887776 345678899998555 55555 68899999977652 21111111 0012
Q ss_pred EEEcCCCCEEEEeeCCC------------------------cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 310 LALSTDGTVLYSGACDR------------------------SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
+.|+|+++.++..+.++ .|.+||+.+++.. ......+...+.++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~------------~~~~~~~~~~~~~~ 246 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA------------MREVRIMDVFYFST 246 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE------------EEEEEECSSCEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce------------EeecCCCCCceeeE
Confidence 36789888776554333 4688999877542 12233455667788
Q ss_pred EEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 366 AVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 366 ~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
+|+++ +++++ ++.|++||+.++ +.+..+.. ...+.+++|+|+++ +|++++.|+.
T Consensus 247 ~~s~dg~~l~~~--~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~-------------~l~~~~~~~~ 302 (337)
T 1pby_B 247 AVNPAKTRAFGA--YNVLESFDLEKN--------ASIKRVPL-PHSYYSVNVSTDGS-------------TVWLGGALGD 302 (337)
T ss_dssp EECTTSSEEEEE--ESEEEEEETTTT--------EEEEEEEC-SSCCCEEEECTTSC-------------EEEEESBSSE
T ss_pred EECCCCCEEEEe--CCeEEEEECCCC--------cCcceecC-CCceeeEEECCCCC-------------EEEEEcCCCc
Confidence 88854 77776 799999999874 44455543 34678999999998 8888899999
Q ss_pred EEEEEeC
Q 041325 444 IKIWQIR 450 (450)
Q Consensus 444 i~iw~l~ 450 (450)
|++||++
T Consensus 303 i~v~d~~ 309 (337)
T 1pby_B 303 LAAYDAE 309 (337)
T ss_dssp EEEEETT
T ss_pred EEEEECc
Confidence 9999974
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=183.89 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=124.3
Q ss_pred cCCCceEEEEEccCCCEEE----EEeCCCcEEEEecCCC--------eE---EEEeecccccceEEEEEeecCCcEEEEE
Q 041325 208 HHVDTVSALALSSDGSLLY----STSWDRTFKIWRTSDF--------RC---LESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
.+...|.+++|+|++++|+ +|+.|+.|++||+.++ +. +..+. +|...|.+++|+|....+|+++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-DAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-SGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-CCCCceEEEEECCCCCCEEEEE
Confidence 3667899999999999999 7888999999998764 22 23333 6899999999999767799999
Q ss_pred cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
+.||.|++||++++. .......|...|++++|+|+|++|++|+.||.|++||.+ ++.........
T Consensus 169 s~Dg~v~iwD~~~~~--------~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~------ 233 (434)
T 2oit_A 169 LADGSIAVLQVTETV--------KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP------ 233 (434)
T ss_dssp ETTSCEEEEEESSSE--------EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCT------
T ss_pred ECCCeEEEEEcCCCc--------ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCc------
Confidence 999999999997764 233334578899999999999999999999999999998 43321110000
Q ss_pred ccccCCccceEEEEEeCC--eE-EEEeCCCe------EEEeeCCCC
Q 041325 353 GALRGHTKAILCLAVVSN--LL-FSGSSDNT------IRIWRRSSS 389 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~--~l-~s~~~dg~------v~iwd~~~~ 389 (450)
.....|...|.+++|+++ ++ +....||. +++|++...
T Consensus 234 ~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 001134558999999966 33 23444433 899999864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-20 Score=167.99 Aligned_cols=266 Identities=9% Similarity=0.087 Sum_probs=184.7
Q ss_pred CCcceEEEEE--eCCEEEEeeC-------CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSS-------NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LF 141 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~ 141 (450)
....+..+++ +++++++++. ++.|.+||..+++...... ....+..++|++++ ++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------NDLKPFGATINNTTQTLWF 105 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-------------ESSCCCSEEEETTTTEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-------------cCCCcceEEECCCCCEEEE
Confidence 4456788888 6888888774 5689999999988665521 12357788998765 45
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+...++.|.+||..+++... .++..... ..-......+.+++|+|+
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~----------------~~~~~~~~------------------~~~~~~~~~~~~~~~s~d 151 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKG----------------RLVLDDRK------------------RTEEVRPLQPRELVADDA 151 (353)
T ss_dssp EETTTTEEEEEETTTCCEEE----------------EEESCCCC------------------CCSSCCCCEEEEEEEETT
T ss_pred EecCCCEEEEEeCCCCeeEE----------------EEecCCCc------------------cccccCCCCCceEEECCC
Confidence 55668999999999884321 11110000 000001113688999999
Q ss_pred CCEEEEEe--CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 222 GSLLYSTS--WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 222 ~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
++++++++ .++.|.+||..+++.+..+. .+...+..++|+|+++ .++++..++.|.+||..+++ ....
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~--------~~~~ 221 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNK--------ILSR 221 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTE--------EEEE
T ss_pred CCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCe--------EEEE
Confidence 99877776 47889999999999888776 3555688999998554 77788889999999997765 2222
Q ss_pred Hh----hcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeE
Q 041325 300 LE----KHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLL 372 (450)
Q Consensus 300 ~~----~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 372 (450)
+. ++...+..++|+|+++++++++. ++.|.+||..+++.+. .+..... .+++|+ ++++
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-------------~~~~~~~--~~~~~s~dg~~l 286 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-------------KVAAPES--LAVLFNPARNEA 286 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-------------EEECSSC--CCEEEETTTTEE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-------------EEEcCCC--ceEEECCCCCEE
Confidence 22 24556788999999998777665 4899999999887552 1111111 356676 4444
Q ss_pred -EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 373 -FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 373 -~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
++...++.|.+||..++ +.+..+... ..+.+++|+|+++
T Consensus 287 ~v~~~~~~~v~~~d~~~~--------~~~~~~~~~-~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSY--------KVVKTFDTP-THPNSLALSADGK 326 (353)
T ss_dssp EEEETTTTEEEEEETTTT--------EEEEEEECC-SEEEEEEECTTSC
T ss_pred EEEECCCCeEEEEECCCC--------eEEEEEecC-CCCCeEEEcCCCC
Confidence 45557999999999874 555555543 4679999999998
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-20 Score=167.43 Aligned_cols=269 Identities=14% Similarity=0.191 Sum_probs=179.1
Q ss_pred CCCcEEEecCCC--CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeC---CCeEEEEEcCCCceeEEeccC
Q 041325 93 SNGEIRAWNRDP--NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQ---DHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 93 ~dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~---dg~i~iw~~~~~~~~~~~~~~ 166 (450)
.++.|.+|+++. ++.... ....+...+..++|+|++ |++++. ++.|.+|++..+...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~-----------~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND-----------GLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAH------ 76 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE-----------EEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEE------
T ss_pred CCCCEEEEEEcCCCCeEEEe-----------eeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEE------
Confidence 356677777654 443322 123455678889999887 666655 689999999766321
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCC---C
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSD---F 242 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~ 242 (450)
.+ ..+..+...+..++|+|+|++|++++ .++.|.+||+.. .
T Consensus 77 --------~~---------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 77 --------KL---------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp --------EE---------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred --------Ee---------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 11 11123556788999999999888887 789999999962 2
Q ss_pred eEEEEeecc--------cccceEEEEEeecCCcEEEEEcCCCcEEEEeCc-chhhhccccchhhhhHhh-cccceEEEEE
Q 041325 243 RCLESVKNA--------HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL-RAALQVNKKHSLVQTLEK-HKSAVTALAL 312 (450)
Q Consensus 243 ~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~-~~~~i~~l~~ 312 (450)
+.+..+... ....+.+++|+|++. ++++...++.|++|++. +++.. ....+.. ....+..++|
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~------~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLS------EQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEE------EEEEEECCTTCCEEEEEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEE------EeeeEEcCCCCCCceEEE
Confidence 333333211 112488899999777 78888889999999987 33210 1111111 2235778999
Q ss_pred cCCCCEEEE-eeCCCcEEEEEcCC--CceeeeCCCCCCceeeeccccCC------ccceEEEEEeCC--eE-EEEeCCCe
Q 041325 313 STDGTVLYS-GACDRSILVWERDQ--GNYIVDGDDDSGHMVLKGALRGH------TKAILCLAVVSN--LL-FSGSSDNT 380 (450)
Q Consensus 313 ~~~~~~l~~-g~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~--~l-~s~~~dg~ 380 (450)
+|||++|++ +..++.|.+|++.. ++.. ........ ...+..++|+++ +| ++...++.
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFT-----------QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEE-----------EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceE-----------EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 999996665 55688999999874 3321 11111111 145778888854 55 56667899
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc-CCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL-DCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~i~iw~l 449 (450)
|.+|++... .....+..+..+...+..++|+|+++ +|++++. ++.|.+|++
T Consensus 264 v~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~spdg~-------------~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 264 LAVFAVTAD-----GHLTLIQQISTEGDFPRDFDLDPTEA-------------FVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEECGG-----GCEEEEEEEECSSSCCCEEEECTTSS-------------EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCC-----CcEEEeEEEecCCCCcCeEEECCCCC-------------EEEEEEcCCCcEEEEEE
Confidence 999998732 12456666776777789999999999 7777665 589999965
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-20 Score=192.62 Aligned_cols=320 Identities=9% Similarity=0.036 Sum_probs=215.1
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCC------CcEEEecCCCCCceeeeecCCCCcceeEEecCCCce-------
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSN------GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV------- 130 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v------- 130 (450)
.+.+. +|...+.+++| ||++||.++.+ ..|++|++.+++... +..|...+
T Consensus 45 ~~~lt--~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~-------------lt~~~~~~~~~~~~~ 109 (1045)
T 1k32_A 45 TRKIV--SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-------------ITYFSGKSTGRRMFT 109 (1045)
T ss_dssp EEEEE--CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-------------CCCCCEEEETTEECS
T ss_pred EEEee--eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEE-------------cccCCCccccccccc
Confidence 45666 89999999999 89999988653 379999998876322 45677777
Q ss_pred EEEEEeCCe--EEEEeCC------CeEEEEEcCCCceeEEeccCcccc------------------------cceeee--
Q 041325 131 KSLVVLGDK--LFSAHQD------HKIRVWKIDNNTSAYYSTSGKLKN------------------------KYYERI-- 176 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~------------------------~~~~~~-- 176 (450)
..++|+||+ +++++.+ ..|..|++.++............. .....+
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~ 189 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 189 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEE
Confidence 999999887 5666544 358888887765432211100000 000000
Q ss_pred -------eeccCC----------CcceeEeeecCceEEEeec-----ceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 177 -------ATLPTL----------NDRFTKCFLANNYVQVRRH-----KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 177 -------~~~~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
..+... .+.+......++...++.. ....+..|. .+...+|+|+|++++.+. ++.|
T Consensus 190 ~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i 267 (1045)
T 1k32_A 190 EVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSI 267 (1045)
T ss_dssp EEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEE
T ss_pred ECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEE
Confidence 000000 1111111122222233221 122333343 466779999999888875 8999
Q ss_pred EEEecCCCeEEEEeec----------ccccceEEEEEe-ecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 235 KIWRTSDFRCLESVKN----------AHDDAINAIVVS-KSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~----------~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
.+||+...+ +..+.. .+...+.+++|+ |++. .+++++ ++.|.+|++..+. ...+..+
T Consensus 268 ~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~---------~~~~~~~ 335 (1045)
T 1k32_A 268 YIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTY---------VLKVPEP 335 (1045)
T ss_dssp EEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSB---------EEECSCC
T ss_pred EEecCCceE-eeeeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCc---------eEEccCC
Confidence 999995443 334431 133478999999 8555 566555 7899999986554 1123445
Q ss_pred cc-ceEEEEEcCCCCEEEEeeCCCcEE-EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC
Q 041325 304 KS-AVTALALSTDGTVLYSGACDRSIL-VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 304 ~~-~i~~l~~~~~~~~l~~g~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
.. .+..++|+ ||+.|+.++.++.+. +||+..++.. .+..|...+..++|++ ++|++++.++
T Consensus 336 ~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~--------------~l~~~~~~~~~~~~SpDG~~la~~~~~~ 400 (1045)
T 1k32_A 336 LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE--------------KFEENLGNVFAMGVDRNGKFAVVANDRF 400 (1045)
T ss_dssp SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE--------------ECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce--------------EecCCccceeeeEECCCCCEEEEECCCC
Confidence 56 78999999 999999999888888 9998876432 2336778899999985 4899999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCC----------cEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC----------EIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg----------~i~iw~l 449 (450)
.|++||+.++ +......+|...+.+++|+||++ +|++++.++ .|++||+
T Consensus 401 ~v~~~d~~tg--------~~~~~~~~~~~~v~~~~~SpDG~-------------~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 401 EIMTVDLETG--------KPTVIERSREAMITDFTISDNSR-------------FIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEEEETTTC--------CEEEEEECSSSCCCCEEECTTSC-------------EEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred eEEEEECCCC--------ceEEeccCCCCCccceEECCCCC-------------eEEEEecCccccccCCCCCeEEEEEC
Confidence 9999999875 44555567999999999999999 888887654 8999997
Q ss_pred C
Q 041325 450 R 450 (450)
Q Consensus 450 ~ 450 (450)
+
T Consensus 460 ~ 460 (1045)
T 1k32_A 460 E 460 (1045)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-20 Score=165.61 Aligned_cols=276 Identities=10% Similarity=0.142 Sum_probs=178.4
Q ss_pred CCCcceEEEEE--eCCEEEEeeCC-CcEEEecCC--CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe-
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSN-GEIRAWNRD--PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH- 144 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~d-g~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~- 144 (450)
.|...+.+++| ++++|++++.+ +.|++|+++ +++..... .+..+ ..+..++|++++ +++++
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~s~dg~~l~~~~~ 103 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA----------ESALP-GSLTHISTDHQGQFVFVGSY 103 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE----------EEECS-SCCSEEEECTTSSEEEEEET
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc----------ccccC-CCCcEEEEcCCCCEEEEEec
Confidence 57788999999 79988888876 999999987 44433221 12233 378999999876 65555
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.++.|.+||+..+... .....+ .....+.+++|+|++++
T Consensus 104 ~~~~i~~~d~~~~~~~-------------~~~~~~----------------------------~~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPV-------------GVVDVV----------------------------EGLDGCHSANISPDNRT 142 (343)
T ss_dssp TTTEEEEEEEETTEEE-------------EEEEEE----------------------------CCCTTBCCCEECTTSSE
T ss_pred CCCeEEEEECCCCccc-------------cccccc----------------------------cCCCCceEEEECCCCCE
Confidence 4899999999633110 111111 12335888999999998
Q ss_pred EEEEe-CCCcEEEEecCC-CeEEE----EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc--hhhhccccchh
Q 041325 225 LYSTS-WDRTFKIWRTSD-FRCLE----SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR--AALQVNKKHSL 296 (450)
Q Consensus 225 l~~~~-~dg~i~iwd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~ 296 (450)
+++++ .++.|.+||+.+ ++... .+.......+..++|+|++..+++++..++.|.+|++.. ++... ...
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~---~~~ 219 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC---VQT 219 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE---EEE
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE---Eee
Confidence 88887 899999999987 54432 223233457889999986664556667899999999854 22100 001
Q ss_pred hhhHh---hcccceEEEEEcCCCCEEEE-eeCCCcEEEEEcCC--CceeeeCCCCCCceeeeccccCCccceEEEEEeC-
Q 041325 297 VQTLE---KHKSAVTALALSTDGTVLYS-GACDRSILVWERDQ--GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS- 369 (450)
Q Consensus 297 ~~~~~---~~~~~i~~l~~~~~~~~l~~-g~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 369 (450)
...+. .....+..++|+|++++|++ +..++.|.+||+.. ++. .....+..+.. +.+++|++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~-----------~~~~~~~~~~~-~~~~~~s~d 287 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL-----------SKEGFQPTETQ-PRGFNVDHS 287 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE-----------EEEEEEECSSS-CCCEEECTT
T ss_pred ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce-----------EEeeeecCCCc-cceEEECCC
Confidence 11111 11345678999999998875 44789999999983 221 12222333333 77888874
Q ss_pred -CeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 370 -NLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 370 -~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
++|++++ .++.|.+|++... ....+.+..+.. .....+++|.++.+
T Consensus 288 g~~l~~~~~~~~~v~v~~~d~~----~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 288 GKYLIAAGQKSHHISVYEIVGE----QGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp SSEEEEECTTTCEEEEEEEETT----TTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred CCEEEEecCCCCeEEEEEEcCC----CceeeEcccccc-CCCCeeEEEEcccC
Confidence 4677666 6899999966521 111344444443 24567888888765
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=192.88 Aligned_cols=282 Identities=10% Similarity=0.037 Sum_probs=183.1
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC---ceEEEEEeCCe--EEEEeCC---
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD---AVKSLVVLGDK--LFSAHQD--- 146 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~--l~s~~~d--- 146 (450)
.+.+++| ||+++++ +.||+|++||+.+++.... +.+|.. .|.+++|+||+ |++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~------------~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~ 84 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL------------IEGKKIESLRAIRYEISPDREYALFSYNVEPI 84 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE------------ECTTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE------------eccccccccccceEEECCCCCEEEEEecCccc
Confidence 3566777 7887766 7899999999998876554 344543 49999999987 7777664
Q ss_pred ------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 147 ------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 147 ------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
+.|.+||+++++.. .+.. ...|...+..++|+|
T Consensus 85 ~~~~~~~~i~~~d~~~~~~~--------------~l~~---------------------------~~~~~~~~~~~~~SP 123 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDPQ--------------SLDP---------------------------PEVSNAKLQYAGWGP 123 (723)
T ss_dssp SSSCCCSEEEEEESSSCCCE--------------ECCC---------------------------TTCCSCCCSBCCBCS
T ss_pred eeecceeeEEEEECCCCceE--------------eccC---------------------------CccccccccccEECC
Confidence 78889999887321 0000 013445688899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc------------------eEEEEEeecCCcEEEEEcCCC------
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA------------------INAIVVSKSNDGFVYTGSADT------ 276 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~l~~~~~dg------ 276 (450)
||+.|+.++. +.|++||+.+++...... .+... +.+++|+|++. .|+.++.++
T Consensus 124 dG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~ 200 (723)
T 1xfd_A 124 KGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIM 200 (723)
T ss_dssp STTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEE
T ss_pred CCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceE
Confidence 9999999885 799999999887665554 32322 37899999665 566655432
Q ss_pred ----------------------------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC----
Q 041325 277 ----------------------------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---- 324 (450)
Q Consensus 277 ----------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---- 324 (450)
.|++||+.+++... ..........+...+..++|+|||++|++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 278 (723)
T 1xfd_A 201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL--EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN 278 (723)
T ss_dssp EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE--ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC
T ss_pred EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE--EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCC
Confidence 78999987665100 00000112224667899999999998877653
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeecccc-CCccce----EEEEEeC--CeEEE--EeCCC------eEEEeeC-CC
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALR-GHTKAI----LCLAVVS--NLLFS--GSSDN------TIRIWRR-SS 388 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v----~~~~~~~--~~l~s--~~~dg------~v~iwd~-~~ 388 (450)
+..|++||+.+++... ... .+...+ ..++|++ +.|+. +..++ .|.+||. ..
T Consensus 279 ~~~i~~~d~~~g~~~~-------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 345 (723)
T 1xfd_A 279 VSILTLCDATTGVCTK-------------KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN 345 (723)
T ss_dssp EEEEEEEETTTCCEEE-------------EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC
T ss_pred eEEEEEEeCCCCcceE-------------EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC
Confidence 3579999999876441 111 122222 2567774 44443 55677 5667773 33
Q ss_pred CccccCCCceeEEEecCCCcceEE-EEEEecCCCCCCCCCCCCceEEEEEccc-C--CcEEEEEe
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKC-LTAVVDSDYSNRNSDHSSTSFLVYSGSL-D--CEIKIWQI 449 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~~~~~~~~~l~s~~~-D--g~i~iw~l 449 (450)
+. ..+...+..+...+.. ++|+|+++ .|+..+. + +.++||++
T Consensus 346 ~~------~~~~~~l~~~~~~~~~~~~~spdg~-------------~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 346 SS------NDNIQSITSGDWDVTKILAYDEKGN-------------KIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp SS------SCCCCBSCCSSSCEEEEEEEETTTT-------------EEEEEESSSCTTCCEEEEE
T ss_pred CC------ccceeEeecCCeEEEeeeEEcCCCC-------------EEEEEEcCCCCcceEEEEE
Confidence 21 0012233333334444 69999999 6765544 4 88999987
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-21 Score=186.61 Aligned_cols=286 Identities=10% Similarity=0.072 Sum_probs=189.6
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEE
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 151 (450)
..|.+++| | +.++.+. ++.|++||+.+++.... ..+...+.+++|+|++ |+. ..|+.|++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-------------~~~~~~~~~~~~SpdG~~la~-~~~~~i~v 145 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-------------FDTNEETASLDFSPVGDRVAY-VRNHNLYI 145 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-------------ECCTTCCTTCEECTTSSEEEE-EETTEEEE
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-------------cCCcccccCCcCCCCCCEEEE-EECCeEEE
Confidence 56999999 6 6666554 59999999988764432 3556678899999887 555 57899999
Q ss_pred EEcCC-----CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 152 WKIDN-----NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 152 w~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
||+.+ ++......... ... ..... ....+...+.+++|+|||++|+
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~----------------~~~-----------~~g~~--~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 146 ARGGKLGEGMSRAIAVTIDGT----------------ETL-----------VYGQA--VHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp EECBCTTSCCCCCEESCSCCB----------------TTE-----------EESSC--CGGGCTTCCCSEEECTTSSEEE
T ss_pred EecCcccccCCCcEEeccCCC----------------CCe-----------Ecccc--hhhhhcCCCceEEECCCCCEEE
Confidence 99987 53211110000 000 00000 1112334578899999999999
Q ss_pred EEe---------------------------------CCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEE
Q 041325 227 STS---------------------------------WDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 227 ~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
+++ .+..|.+||+.+++....... .+...+.+++|+|++. .|+++
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~ 275 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVA 275 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEE
Confidence 987 457899999999886554431 4567899999999555 66666
Q ss_pred cCCC-----cEEEEeCcch-hhhccccchhhhhHhhcc---cceEEEEEcC--CCCEEEEeeCCCcEEEEEcC-CCceee
Q 041325 273 SADT-----KIKVWKKLRA-ALQVNKKHSLVQTLEKHK---SAVTALALST--DGTVLYSGACDRSILVWERD-QGNYIV 340 (450)
Q Consensus 273 ~~dg-----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~---~~i~~l~~~~--~~~~l~~g~~dg~i~vwd~~-~~~~~~ 340 (450)
+.++ .|++||+.++ ... .+.. ..+. ..+..++|+| ||++++++..||.+++|++. +++.+
T Consensus 276 ~~~~~~~~~~v~~~d~~~g~~~~------~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~- 347 (706)
T 2z3z_A 276 EVNRAQNECKVNAYDAETGRFVR------TLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI- 347 (706)
T ss_dssp EECTTSCEEEEEEEETTTCCEEE------EEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE-
T ss_pred EeCCCCCeeEEEEEECCCCceee------EEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE-
Confidence 5554 8999999776 210 0100 1111 1246789999 99999999999999999876 44322
Q ss_pred eCCCCCCceeeeccccCCccceEE-EEEeCC--eE-EEEeCCC----eEEEeeCCCCccccCCCceeEEEecCCCcceEE
Q 041325 341 DGDDDSGHMVLKGALRGHTKAILC-LAVVSN--LL-FSGSSDN----TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412 (450)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~--~l-~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 412 (450)
..+..+...+.. ++|+++ .| ++++.++ .|..||+.++ . ...+. |...+.+
T Consensus 348 ------------~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--------~-~~~l~-~~~~~~~ 405 (706)
T 2z3z_A 348 ------------RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--------K-TKDLT-PESGMHR 405 (706)
T ss_dssp ------------EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--------C-CEESC-CSSSEEE
T ss_pred ------------EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--------C-ceecc-CCCceEE
Confidence 344556667766 688744 55 4555554 5666776653 1 22333 6677999
Q ss_pred EEEEecCCCCCCCCCCCCceEEEEEcccC----CcEEEEEeC
Q 041325 413 LTAVVDSDYSNRNSDHSSTSFLVYSGSLD----CEIKIWQIR 450 (450)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~s~~~D----g~i~iw~l~ 450 (450)
++|+|+++ +++..+.+ +.|++||++
T Consensus 406 ~~~spdg~-------------~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 406 TQLSPDGS-------------AIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEECTTSS-------------EEEEEEECSSCSCEEEEEESS
T ss_pred EEECCCCC-------------EEEEEecCCCCCcEEEEEECC
Confidence 99999998 66655433 569999863
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-21 Score=182.62 Aligned_cols=263 Identities=11% Similarity=0.078 Sum_probs=182.9
Q ss_pred CcceEEEEE--eCCEEEEeeC-CCcEEEecCCCCCceeeeecCCCCcceeEEecCC-CceEEEEEeCCe-EEEEeC---C
Q 041325 75 SSYIPSLAI--AGKLLYGGSS-NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG-DAVKSLVVLGDK-LFSAHQ---D 146 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~-l~s~~~---d 146 (450)
..+|.+++| ||++||+++. ||+++||++++++.... ..|. ..+..++|+|+. +++++. +
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~l-------------t~~~~~~~~~~~~spd~~l~~~~~~~g~ 87 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKL-------------NREPINSVLDPHYGVGRVILVRDVSKGA 87 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEEC-------------CSSCCSEECEECTTCSEEEEEEECSTTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEee-------------ecccccccccccCCCCeEEEEeccCCCC
Confidence 567999988 8999999887 99999999866654332 3444 689999999988 555554 4
Q ss_pred CeEEEEEcCC--CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 147 HKIRVWKIDN--NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 147 g~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
...++|.++. ... .. .+ .....+...+|+|+++.
T Consensus 88 ~~~~l~~~~~~~~g~--------------~~--~l----------------------------~~~~~~~~~~~s~dg~~ 123 (582)
T 3o4h_A 88 EQHALFKVNTSRPGE--------------EQ--RL----------------------------EAVKPMRILSGVDTGEA 123 (582)
T ss_dssp CCEEEEEEETTSTTC--------------CE--EC----------------------------TTSCSBEEEEEEECSSC
T ss_pred cceEEEEEeccCCCc--------------cc--cc----------------------------cCCCCceeeeeCCCCCe
Confidence 5567766654 210 00 00 01112345678887753
Q ss_pred -EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC----CcEEEEeCcchhhhccccchhhhh
Q 041325 225 -LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----TKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 225 -l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+++.+.++.+.+||+.+++...... +.. .+++|+|++. .++.++.+ +.|++||+.+++ ...
T Consensus 124 ~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~---------~~~ 189 (582)
T 3o4h_A 124 VVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGG---------LRV 189 (582)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCC---------CEE
T ss_pred EEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCC---------ceE
Confidence 3344445556699999887655544 222 8899999665 77766665 789999987765 224
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE--------EeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA--------VVS 369 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~ 369 (450)
+..+...+..++|+|||++|+++..++ .|++||+.+++.. .+..|...+..++ |++
T Consensus 190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~sp 255 (582)
T 3o4h_A 190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--------------DLELPSKDFSSYRPTAITWLGYLP 255 (582)
T ss_dssp ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--------------ECCCSCSHHHHHCCSEEEEEEECT
T ss_pred eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--------------EccCCCcChhhhhhccccceeEcC
Confidence 456778889999999999999888888 8999999887633 3344544454444 775
Q ss_pred C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc---E
Q 041325 370 N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE---I 444 (450)
Q Consensus 370 ~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~---i 444 (450)
+ ++++++.||.+++|++ + +... .+.+.|.+++|+ ++. ++++++.+.. |
T Consensus 256 dg~~~~~~~~~g~~~l~~~--g--------~~~~---~~~~~v~~~~~s-dg~-------------~l~~~s~~~~p~~l 308 (582)
T 3o4h_A 256 DGRLAVVARREGRSAVFID--G--------ERVE---APQGNHGRVVLW-RGK-------------LVTSHTSLSTPPRI 308 (582)
T ss_dssp TSCEEEEEEETTEEEEEET--T--------EEEC---CCSSEEEEEEEE-TTE-------------EEEEEEETTEEEEE
T ss_pred CCcEEEEEEcCCcEEEEEE--C--------Ceec---cCCCceEEEEec-CCE-------------EEEEEcCCCCCCeE
Confidence 4 8889999999999998 3 2222 234678899999 887 8888887754 5
Q ss_pred EEEEe
Q 041325 445 KIWQI 449 (450)
Q Consensus 445 ~iw~l 449 (450)
.+|++
T Consensus 309 ~~~d~ 313 (582)
T 3o4h_A 309 VSLPS 313 (582)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 55553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5e-21 Score=188.48 Aligned_cols=269 Identities=11% Similarity=0.104 Sum_probs=172.9
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCc--eeeeecCCC-----CcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNY--VNITSTDVG-----DHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~--~~~~~~~~~-----~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
+.|.|+.+++++.|| | +||+.+++. ......... ..... ...+...|.+++|+++..+..+.|+.|++||
T Consensus 31 ~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d 107 (706)
T 2z3z_A 31 LQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKF-QTTDAFPSFRTLDAGRGLVVLFTQGGLVGFD 107 (706)
T ss_dssp CEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC------------CCCEEEEETTTTEEEEEETTEEEEEE
T ss_pred CcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcc-ccccccCceeEEECCCCeEEEEECCEEEEEE
Confidence 444477788888888 8 999998876 332111000 00000 0112257999999998744444579999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
+.+++.. .+..+...+.+++|+|+|++|+.+ .++.
T Consensus 108 ~~~~~~~--------------------------------------------~l~~~~~~~~~~~~SpdG~~la~~-~~~~ 142 (706)
T 2z3z_A 108 MLARKVT--------------------------------------------YLFDTNEETASLDFSPVGDRVAYV-RNHN 142 (706)
T ss_dssp TTTTEEE--------------------------------------------EEECCTTCCTTCEECTTSSEEEEE-ETTE
T ss_pred CCCCceE--------------------------------------------EccCCcccccCCcCCCCCCEEEEE-ECCe
Confidence 9887321 111345567889999999999985 5899
Q ss_pred EEEEecCC-----CeEEEEeecccccc--------------eEEEEEeecCCcEEEEEc---------------------
Q 041325 234 FKIWRTSD-----FRCLESVKNAHDDA--------------INAIVVSKSNDGFVYTGS--------------------- 273 (450)
Q Consensus 234 i~iwd~~~-----~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~--------------------- 273 (450)
|++||+.+ ++...... .+... +.++.|+|++. .|++++
T Consensus 143 i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 143 LYIARGGKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp EEEEECBCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred EEEEecCcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCce
Confidence 99999998 76655443 22222 58899999655 666665
Q ss_pred ------------CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-----cEEEEEcCCC
Q 041325 274 ------------ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-----SILVWERDQG 336 (450)
Q Consensus 274 ------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-----~i~vwd~~~~ 336 (450)
.+..|++||+.+++.. .+.....+...+..++|+|||++|++++.++ .|++||+.++
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTV------YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEE------ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceE------eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 4578999999776511 1111124567799999999999999988775 8999999987
Q ss_pred ceeeeCCCCCCceeeeccccCCccceEEEEEeC--C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEE
Q 041325 337 NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412 (450)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 412 (450)
+.... ............+.++.|++ + ++++++.||.+++|++... ...+..+..|...+..
T Consensus 295 ~~~~~--------~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-------~~~~~~l~~~~~~v~~ 359 (706)
T 2z3z_A 295 RFVRT--------LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-------GRLIRQVTKGEWEVTN 359 (706)
T ss_dssp CEEEE--------EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-------SCEEEECCCSSSCEEE
T ss_pred ceeeE--------EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-------CCEEEecCCCCeEEEe
Confidence 32210 00000011111235567765 4 8889999999999987621 2456667778888877
Q ss_pred -EEEEecCC
Q 041325 413 -LTAVVDSD 420 (450)
Q Consensus 413 -l~~~~~~~ 420 (450)
++|+|+++
T Consensus 360 ~~~~spdg~ 368 (706)
T 2z3z_A 360 FAGFDPKGT 368 (706)
T ss_dssp EEEECTTSS
T ss_pred eeEEcCCCC
Confidence 79999998
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-21 Score=175.19 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=147.0
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCe----------EEEE----eecccccceEEEEEeecCCcEEE----EE
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR----------CLES----VKNAHDDAINAIVVSKSNDGFVY----TG 272 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~----~~~~~~~~v~~~~~~~~~~~~l~----~~ 272 (450)
..++.+++++++.++++++.++ +++|+..... .+.. ....+...|.+++|+|++. +|+ ++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEecc
Confidence 4678899999999999999888 8888753210 1111 0113556799999999655 666 78
Q ss_pred cCCCcEEEEeCcchhhhcc---ccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 273 SADTKIKVWKKLRAALQVN---KKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
+.|+.|++||+++...... ........+.+|...|.+++|+|+ +++|++++.||.|++||++++...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~--------- 185 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV--------- 185 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE---------
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce---------
Confidence 8999999999876520000 011123445678999999999997 889999999999999999987533
Q ss_pred eeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-------CCcceEEEEEEecC
Q 041325 349 MVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-------HRRPVKCLTAVVDS 419 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~ 419 (450)
....+|...|.+++|+ +++|++|+.||.|++||.+. .....+.. |...|.+++|+++.
T Consensus 186 ----~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~---------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 186 ----CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL---------QEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp ----EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC---------CEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred ----eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC---------cccccccCCcccCCCCceeEEEEEEecCc
Confidence 2345688899999998 45999999999999999882 22233322 34589999999988
Q ss_pred CCCCCCCCCCCceEEEEE-cccCCc------EEEEEeC
Q 041325 420 DYSNRNSDHSSTSFLVYS-GSLDCE------IKIWQIR 450 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s-~~~Dg~------i~iw~l~ 450 (450)
. ++++ ++.||. +++|+++
T Consensus 253 ~-------------~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 253 V-------------FAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp E-------------EEEEEEETTCCSSSCCEEEEEECC
T ss_pred e-------------EEEEEccCCCccCCCCceEEEEec
Confidence 7 5533 444543 8899874
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=161.46 Aligned_cols=260 Identities=11% Similarity=0.097 Sum_probs=170.3
Q ss_pred CCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeC-CCcEEEecCCCCCc-eeeeecCCCCcceeEEecCCCceE
Q 041325 56 QAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSS-NGEIRAWNRDPNNY-VNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~-dg~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
..+...+++.+..+. .+...+ +++| |++++++++. ++.|++||+.+++. ... +..+..+..
T Consensus 23 ~~~d~~~~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~------------~~~~~~~~~ 87 (331)
T 3u4y_A 23 SFFSTDTLEILNQIT--LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA------------IQEGQSSMA 87 (331)
T ss_dssp EEEETTTCCEEEEEE--CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE------------EEECSSCCC
T ss_pred EEEeCcccceeeeEE--ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe------------cccCCCCcc
Confidence 344455667777777 556666 8888 7886666655 89999999998875 333 445555555
Q ss_pred EEEEeCCe--EEEEeCCC---eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 132 SLVVLGDK--LFSAHQDH---KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 132 ~l~~~~~~--l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
+++|++++ ++++..++ .|.+||+.+++. +..++
T Consensus 88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~----------------~~~~~-------------------------- 125 (331)
T 3u4y_A 88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF----------------ISTIP-------------------------- 125 (331)
T ss_dssp CEEECTTSSEEEECCCSSSSCEEEEEETTTTEE----------------EEEEE--------------------------
T ss_pred ceEECCCCCEEEEecCCCCcccEEEEECCCCCe----------------EEEEE--------------------------
Confidence 59999876 66544442 899999988732 21111
Q ss_pred ecCCCceEEEEEccCCCEEEEE-eCCCc-EEEEecCCCeEEE----EeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 207 VHHVDTVSALALSSDGSLLYST-SWDRT-FKIWRTSDFRCLE----SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
......+++|+|+|++++++ ..++. |.+|++.....+. ... .....+..++|+|++..+++++..++.|.+
T Consensus 126 --~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 126 --IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGI 202 (331)
T ss_dssp --CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred --CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 23356899999999855554 55688 9999987543221 111 334567999999866656677778999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
||+.+++. ...+..+. ....+..++|+|+|++|+++. .++.|.+||+.+++..... .....+..+.
T Consensus 203 ~d~~~~~~-----~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-------~~~~~~~~~~ 269 (331)
T 3u4y_A 203 LETQNPEN-----ITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK-------SFGHGLLIDP 269 (331)
T ss_dssp EECSSTTS-----CEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEE-------EEECCCCCCC
T ss_pred EECCCCcc-----cceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeec-------ccccccccCC
Confidence 99977651 00033333 336678899999999776654 5788999999987752100 0001111111
Q ss_pred c---ceEEEEEeC--CeEE-EEeCCCeEEEeeCCC
Q 041325 360 K---AILCLAVVS--NLLF-SGSSDNTIRIWRRSS 388 (450)
Q Consensus 360 ~---~v~~~~~~~--~~l~-s~~~dg~v~iwd~~~ 388 (450)
. ....++|++ ++|+ ++..++.|.+||+..
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 1 124567774 4554 555677999999986
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=162.81 Aligned_cols=242 Identities=12% Similarity=0.021 Sum_probs=167.9
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecC-CCceEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGN-GDAVKSLV 134 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~ 134 (450)
....++.. .+. .|...|.+++| |+++|++++ ++.|++||+.+ ++.... ..+| ...+.+++
T Consensus 28 d~~~~~~~-~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~------------~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 28 NIRTRKMR-VVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV------------DTGFATICNNDHG 91 (297)
T ss_dssp ETTTTEEE-EEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC------------CCTTCCCBCSCCE
T ss_pred eCCCCcee-eec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe------------ccccccccccceE
Confidence 33444444 344 68899999999 799999987 78999999998 765544 2233 46789999
Q ss_pred EeCCe--EEEEe--CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 135 VLGDK--LFSAH--QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 135 ~~~~~--l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
|+++. |++++ .++...+|.++.... . ... + .+.
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~--------------~-~~~---------------------------~-~~~ 128 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGG--------------T-PRL---------------------------M-TKN 128 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCC--------------C-CEE---------------------------C-CSS
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCC--------------c-eEE---------------------------e-ecC
Confidence 99887 77777 345666666543210 0 000 0 122
Q ss_pred CceEEEEEccCCCEEE-EEeCCCcEEEEecC--CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 211 DTVSALALSSDGSLLY-STSWDRTFKIWRTS--DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
..+..++|+|++++|+ ++..++.+++|++. +++. ..+. .+...+.++.|+|++..+++++..++.+++|++....
T Consensus 129 ~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 129 LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 2488899999999877 77789999999853 3433 3444 5678899999998665445555568999999985321
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----------CcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----------RSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.....+..+...+..++|+|++++|++++.+ +.|++||+.+++.. ......
T Consensus 207 -------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~~~~~~ 268 (297)
T 2ojh_A 207 -------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE-----------TLFDLF 268 (297)
T ss_dssp -------SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE-----------EEEEEE
T ss_pred -------CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce-----------eeeccC
Confidence 1233445566788999999999999988876 56999999876532 223344
Q ss_pred CCccceEEEEEeC--CeEEEEeCCC
Q 041325 357 GHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
+|...+.+++|++ ++|++++.+.
T Consensus 269 ~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 269 GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCcccccceECCCCCEEEEEEecc
Confidence 6777888888984 4777666553
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-20 Score=180.22 Aligned_cols=291 Identities=10% Similarity=-0.008 Sum_probs=182.1
Q ss_pred CCCCccceeeeEEeecCCCc---ceEEEEE--eCCEEEEeeCC---------CcEEEecCCCCCceeeeecCCCCcceeE
Q 041325 57 APAASEHQCSATLKVKGNSS---YIPSLAI--AGKLLYGGSSN---------GEIRAWNRDPNNYVNITSTDVGDHANVV 122 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~---~v~~~~~--d~~~l~tgs~d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~ 122 (450)
.....++++...+. +|.. .|.+++| ||++|++++.+ +.|++||+.+++......
T Consensus 41 ~~d~~~g~~~~~~~--~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---------- 108 (723)
T 1xfd_A 41 LWNVETNTSTVLIE--GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP---------- 108 (723)
T ss_dssp EBCGGGCCCEEEEC--TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC----------
T ss_pred EEECCCCcEEEEec--cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC----------
Confidence 34445566666666 6665 4999999 89999999875 788899999887532211
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
..+|...+..++|+||+ |+.++. +.|++||+.+++.......... .
T Consensus 109 ~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~---------------~---------------- 156 (723)
T 1xfd_A 109 PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE---------------G---------------- 156 (723)
T ss_dssp TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT---------------T----------------
T ss_pred CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC---------------C----------------
Confidence 12455568899999888 666665 8999999988743221111000 0
Q ss_pred cceeeeecC---------CCceEEEEEccCCCEEEEEeCCC----------------------------------cEEEE
Q 041325 201 HKKCTWVHH---------VDTVSALALSSDGSLLYSTSWDR----------------------------------TFKIW 237 (450)
Q Consensus 201 ~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iw 237 (450)
..+.++ .+.+.+++|+|||+.|+.++.|+ .|++|
T Consensus 157 ---~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 233 (723)
T 1xfd_A 157 ---VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (723)
T ss_dssp ---TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred ---ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence 000011 12347889999999888877543 79999
Q ss_pred ecCCCeEEEEeecc-----cccceEEEEEeecCCcEEEEEc----CCCcEEEEeCcchhhhccccchhhhhHhh-cccce
Q 041325 238 RTSDFRCLESVKNA-----HDDAINAIVVSKSNDGFVYTGS----ADTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAV 307 (450)
Q Consensus 238 d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i 307 (450)
|+.+++....+... +...+..++|+|++. ++++.. .+..|++||+.+++ ....+.. +...+
T Consensus 234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGV--------CTKKHEDESEAWL 304 (723)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCC--------EEEEEEEECSSCC
T ss_pred ECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCc--------ceEEEEeccCCEE
Confidence 99988765555421 256789999999554 555543 33679999987765 2222211 22333
Q ss_pred ----EEEEEcCCCCEEEE--eeCCC------cEEEEEc-CCCceeeeCCCCCCceeeeccccCCccceEE-EEEeC--Ce
Q 041325 308 ----TALALSTDGTVLYS--GACDR------SILVWER-DQGNYIVDGDDDSGHMVLKGALRGHTKAILC-LAVVS--NL 371 (450)
Q Consensus 308 ----~~l~~~~~~~~l~~--g~~dg------~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~--~~ 371 (450)
..++|+|||+.|+. +..++ .|.+||+ ..++.. ....+..+...+.. ++|++ +.
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----------~~~~l~~~~~~~~~~~~~spdg~~ 373 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND-----------NIQSITSGDWDVTKILAYDEKGNK 373 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-----------CCCBSCCSSSCEEEEEEEETTTTE
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-----------ceeEeecCCeEEEeeeEEcCCCCE
Confidence 37899999997775 44566 5777773 333200 01223323333443 57874 46
Q ss_pred EEEEeCC---CeEEEeeCCCCccccCCCceeEEEecC---CCcceEEEEEEecCC
Q 041325 372 LFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEG---HRRPVKCLTAVVDSD 420 (450)
Q Consensus 372 l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~ 420 (450)
|+..+.+ +.+++|++.... ......+.. |...+..++|+|+++
T Consensus 374 l~~~~~~~~~~~~~l~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 374 IYFLSTEDLPRRRQLYSANTVG------NFNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp EEEEESSSCTTCCEEEEECSST------TCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred EEEEEcCCCCcceEEEEEeCCC------CCCcceecccccCCCCeEEEEECCCCC
Confidence 6655444 789999987431 011122332 667789999999998
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=177.49 Aligned_cols=275 Identities=11% Similarity=0.065 Sum_probs=179.2
Q ss_pred EEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC---ceEEEEEeCCe--EEEEeC-------
Q 041325 80 SLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD---AVKSLVVLGDK--LFSAHQ------- 145 (450)
Q Consensus 80 ~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~--l~s~~~------- 145 (450)
.++| ||++++++ .||.|++||+.+++.... +.+|.. .+.+++|+||+ |+.++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTI------------LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEE------------ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEE------------EccccccccceeeEEECCCCCeEEEEecCceeEEe
Confidence 4566 67555554 699999999999886554 333332 48999999887 776665
Q ss_pred --CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 146 --DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 146 --dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
++.|++||+++++. +... .....+..++|+|||+
T Consensus 87 s~~~~i~~~d~~~g~~----------------~~~~----------------------------~l~~~~~~~~~SPDG~ 122 (719)
T 1z68_A 87 SYTATYYIYDLSNGEF----------------VRGN----------------------------ELPRPIQYLCWSPVGS 122 (719)
T ss_dssp CEEEEEEEEETTTTEE----------------CCSS----------------------------CCCSSBCCEEECSSTT
T ss_pred ecceEEEEEECCCCcc----------------ccce----------------------------ecCcccccceECCCCC
Confidence 78999999998732 0000 0113578899999999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccce-----------------EEEEEeecCCcEEEEEcCCC----------
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAI-----------------NAIVVSKSNDGFVYTGSADT---------- 276 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg---------- 276 (450)
.|+.+. ++.|++||+.+++.......++...+ .+++|+|++. .|+.++.|.
T Consensus 123 ~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 123 KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEE
T ss_pred EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeec
Confidence 999886 78999999998876554332332222 4899999655 666665442
Q ss_pred ------------------------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcE
Q 041325 277 ------------------------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSI 328 (450)
Q Consensus 277 ------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i 328 (450)
.|++||+.+++............+..+...+..++|+||++++++.... ..|
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL 280 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence 7889999876521000000113456688889999999998877774432 248
Q ss_pred EEEE----cCCCceeeeCCCCCCceeeeccc----cCCccceE-----EEEEeC--CeEE--EEeCCC--eEEEeeCCCC
Q 041325 329 LVWE----RDQGNYIVDGDDDSGHMVLKGAL----RGHTKAIL-----CLAVVS--NLLF--SGSSDN--TIRIWRRSSS 389 (450)
Q Consensus 329 ~vwd----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~--~~l~--s~~~dg--~v~iwd~~~~ 389 (450)
.+|| ..+++.. ... ..|...+. .+.|++ +.++ +...+| .|.+||+..+
T Consensus 281 ~~~d~~~~~~~g~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 281 SICDFREDWQTWDCP-------------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp EEEEECSSSSSEECC-------------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred EEEcccCCCCCCceE-------------EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 8899 7666532 222 34555554 677774 4333 454565 4666776653
Q ss_pred ccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc-----CCcEEEEEe
Q 041325 390 VTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL-----DCEIKIWQI 449 (450)
Q Consensus 390 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~-----Dg~i~iw~l 449 (450)
+ ...+..+...+..+.++ +++ .|+..+. ++.+++|.+
T Consensus 348 --------~-~~~lt~~~~~v~~~~~~-d~~-------------~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 348 --------N-AIQITSGKWEAINIFRV-TQD-------------SLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp --------T-CEECSCSSSCEEEEEEE-CSS-------------EEEEEESCGGGCTTCBEEEEE
T ss_pred --------c-eEecccCceEEEEEEEE-eCC-------------EEEEEEecCCCCCceEEEEEE
Confidence 1 34455566678888877 766 4444444 488999976
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.6e-19 Score=157.17 Aligned_cols=242 Identities=9% Similarity=0.077 Sum_probs=168.7
Q ss_pred CCCceEEEEEeCCe--EEEEeC-------CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceE
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQ-------DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (450)
....+..++|+++. +++++. ++.|.+||..+++.. ..++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~----------------~~~~---------------- 86 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT----------------QAIH---------------- 86 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE----------------EEEE----------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE----------------EEEe----------------
Confidence 34578899999875 666553 568999999887321 1111
Q ss_pred EEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCCcEEEEecCCCeEEEEeeccccc--------ceEEEEEeecCCc
Q 041325 197 QVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDRTFKIWRTSDFRCLESVKNAHDD--------AINAIVVSKSNDG 267 (450)
Q Consensus 197 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~ 267 (450)
....+..++|++++++++.+ ..++.|.+||..+++.+..+...... .+.+++++|+++.
T Consensus 87 ------------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 154 (353)
T 3vgz_A 87 ------------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT 154 (353)
T ss_dssp ------------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE
T ss_pred ------------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE
Confidence 12246778999999965554 55799999999999988887632221 2788999986664
Q ss_pred EEEEE-cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCC
Q 041325 268 FVYTG-SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDS 346 (450)
Q Consensus 268 ~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 346 (450)
+++++ +.++.|.+||..+++ ....+..+...+..++|+|++++|++++.++.|.+||..+++.+....
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~--- 223 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIK--------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKK--- 223 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTE--------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEE---
T ss_pred EEEEecCCCceEEEEcCCCCc--------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEE---
Confidence 44444 358899999997765 333333344557889999999999999999999999999887652111
Q ss_pred CceeeeccccCCccceEEEEEeC--CeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCC
Q 041325 347 GHMVLKGALRGHTKAILCLAVVS--NLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSN 423 (450)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 423 (450)
....++...+.+++|++ ++++.++ .++.|.+||..++ +.+..+.... ...++|+|+++.
T Consensus 224 ------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--------~~~~~~~~~~--~~~~~~s~dg~~-- 285 (353)
T 3vgz_A 224 ------LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--------NILAKVAAPE--SLAVLFNPARNE-- 285 (353)
T ss_dssp ------CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--------CEEEEEECSS--CCCEEEETTTTE--
T ss_pred ------cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--------cEEEEEEcCC--CceEEECCCCCE--
Confidence 11123455677888884 4555554 5599999999874 3444444332 257999999982
Q ss_pred CCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 424 RNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 424 ~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
++++...++.|.+||++
T Consensus 286 ----------l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 286 ----------AYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp ----------EEEEETTTTEEEEEETT
T ss_pred ----------EEEEECCCCeEEEEECC
Confidence 44555579999999963
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-18 Score=151.71 Aligned_cols=278 Identities=9% Similarity=0.083 Sum_probs=174.1
Q ss_pred CCCcEEEecCC--CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC----CeEEEEEcCCCceeEEec
Q 041325 93 SNGEIRAWNRD--PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD----HKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 93 ~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iw~~~~~~~~~~~~ 164 (450)
.++.|.+|.++ +++.... ... +...+..++|+|++ |++++.+ +.|.+|+++......
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~-----------~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~--- 89 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPL-----------SDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL--- 89 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEE-----------EEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---
T ss_pred CCCCEEEEEEeCCCCCEEEe-----------ecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---
Confidence 46789999764 4544333 112 66788889999877 7777775 799999987631000
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCCCe
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSDFR 243 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 243 (450)
..+. ....+......+++ +++++++++ .++.|.+|++....
T Consensus 90 ---------~~~~---------------------------~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g 131 (361)
T 3scy_A 90 ---------HLLN---------------------------TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDG 131 (361)
T ss_dssp ---------EEEE---------------------------EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred ---------EEee---------------------------EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCC
Confidence 1111 11123345667777 788777766 68899999997543
Q ss_pred EEEEe----ec---------ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc-chh----hhhHhhccc
Q 041325 244 CLESV----KN---------AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK-HSL----VQTLEKHKS 305 (450)
Q Consensus 244 ~~~~~----~~---------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~----~~~~~~~~~ 305 (450)
.+..+ .. .+...+.+++|+|++..++++...++.|.+|++.......... ... .........
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 211 (361)
T 3scy_A 132 ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS 211 (361)
T ss_dssp CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence 32221 10 1123357899999666556666678999999886543100000 000 011112345
Q ss_pred ceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeC--CCe
Q 041325 306 AVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSS--DNT 380 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~--dg~ 380 (450)
.+..++|+|||+++++++ .++.|.+|++.+++... .........+......++|+++ +|+++.. ++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~--------~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE--------IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE--------EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE--------eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 678999999999887777 68999999998765321 0111122333445678888754 6755554 589
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
|.+|++... ......+..+.. ...+.+++|+|+++ +|++++ .++.|.+|++
T Consensus 284 i~v~~~~~~----~g~~~~~~~~~~-g~~~~~~~~spdg~-------------~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 284 VAIFKVDET----NGTLTKVGYQLT-GIHPRNFIITPNGK-------------YLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEEEECTT----TCCEEEEEEEEC-SSCCCEEEECTTSC-------------EEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCC----CCcEEEeeEecC-CCCCceEEECCCCC-------------EEEEEECCCCCEEEEEE
Confidence 999998621 112344555544 55788999999999 777776 7799999865
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-18 Score=152.22 Aligned_cols=259 Identities=14% Similarity=0.151 Sum_probs=163.7
Q ss_pred CCCcceEEEEE--eCCEEEEeeC---CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe-
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSS---NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH- 144 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~- 144 (450)
.+...+..++| ||+ |++++. ++.|++|++.++...... .+..+...+..++|++++ |++++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~----------~~~~~~~~p~~~a~spdg~~l~~~~~ 105 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN----------TVVAPGTPPAYVAVDEARQLVYSANY 105 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE----------EEEEESCCCSEEEEETTTTEEEEEET
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee----------eeecCCCCCEEEEECCCCCEEEEEeC
Confidence 45677788888 677 555544 689999999766543321 123566788999999876 77776
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.++.|.+|++...... ..+..+...... + ....+...+.+++|+|+|++
T Consensus 106 ~~~~v~v~~~~~~g~~-------------~~~~~~~~~~~~----------------p--~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 106 HKGTAEVMKIAADGAL-------------TLTDTVQHSGHG----------------P--RPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp TTTEEEEEEECTTSCE-------------EEEEEEECCCCC----------------S--STTCSSCCEEEEEECTTSCE
T ss_pred CCCEEEEEEeCCCCCe-------------eecceeecCCCC----------------C--CccccCCCceEEEECCCCcE
Confidence 6899999999643110 111111000000 0 00013345889999999996
Q ss_pred EEEEeCCCcEEEEecC-CCeEE--EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 225 LYSTSWDRTFKIWRTS-DFRCL--ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+++...++.|.+||+. +++.. ..+.......+..++|+|++..++++...++.|.+|++.... ........+.
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~ 230 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT----GAFTQLGIVK 230 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT----TEEEEEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC----CceEEeeeee
Confidence 6666678899999998 45432 222222334678899999666456667888999999986421 0000111111
Q ss_pred h------cccceEEEEEcCCCCEEE-EeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeE
Q 041325 302 K------HKSAVTALALSTDGTVLY-SGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLL 372 (450)
Q Consensus 302 ~------~~~~i~~l~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l 372 (450)
. ....+..++|+|||++|+ +...++.|.+|++..... ......+..+...+..++|++ ++|
T Consensus 231 ~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~----------~~~~~~~~~~~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 231 TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH----------LTLIQQISTEGDFPRDFDLDPTEAFV 300 (347)
T ss_dssp SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC----------EEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc----------EEEeEEEecCCCCcCeEEECCCCCEE
Confidence 1 114588999999999874 555689999999873211 112234444555678888985 477
Q ss_pred EEEeC-CCeEEEeeCC
Q 041325 373 FSGSS-DNTIRIWRRS 387 (450)
Q Consensus 373 ~s~~~-dg~v~iwd~~ 387 (450)
++++. ++.|.+|++.
T Consensus 301 ~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 301 VVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEEcCCCcEEEEEEe
Confidence 77765 5899999554
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=155.27 Aligned_cols=269 Identities=10% Similarity=0.055 Sum_probs=164.6
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~ 160 (450)
++.++++++.++.|++||+.+++....... +....+..++|++++ + ++...++.|.+||+.+++..
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-----------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEEC-----------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEec-----------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 577899999999999999998876554111 111257789999876 4 45567899999999887432
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC---------
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD--------- 231 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 231 (450)
..+..... . ..+...+..++|+|+|+++++++.+
T Consensus 79 ----------------~~~~~~~~-----------------~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 79 ----------------FHANLSSV-----------------P----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp ----------------EEEESCCS-----------------T----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ----------------EEEEcccc-----------------c----ccccccccceEECCCCCEEEEEcccccccccccc
Confidence 11110000 0 0001246789999999999998865
Q ss_pred ---CcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc-
Q 041325 232 ---RTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK- 304 (450)
Q Consensus 232 ---g~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~- 304 (450)
+.|.+||+.+++. +..+. +...+.+++|+|++. + ++++. .|.+||+.+++.. ..+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-l-~~~~~--~i~~~d~~~~~~~--------~~~~~~~~ 187 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGS-L-YVAGP--DIYKMDVKTGKYT--------VALPLRNW 187 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSC-E-EEESS--SEEEECTTTCCEE--------EEECSTTC
T ss_pred cCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCc-E-EEccC--cEEEEeCCCCcee--------cccccccc
Confidence 8999999988543 33333 344688999998655 4 44443 4999999776521 1111000
Q ss_pred -----------------------cceEEEEEcCCCCEEEEeeCCC-cEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 305 -----------------------SAVTALALSTDGTVLYSGACDR-SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 305 -----------------------~~i~~l~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.....+++++++.......... .+..+|..+++... .....+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 255 (349)
T 1jmx_B 188 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT------------QEFADLTE 255 (349)
T ss_dssp CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE------------EEEEECSS
T ss_pred CCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe------------cccccCCC
Confidence 0334566665542211110011 12224444333210 11112344
Q ss_pred ceEEEEEeC-C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 361 AILCLAVVS-N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 361 ~v~~~~~~~-~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
.+.++++++ + +++++ ++.|.+||+.++ +.+..+.. ...+.+++|+|+++ +|++
T Consensus 256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~-------------~l~~ 311 (349)
T 1jmx_B 256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR--------KLIKAANL-DHTYYCVAFDKKGD-------------KLYL 311 (349)
T ss_dssp CEEEEEECSSCTTEEEEE--ESEEEEEETTTT--------EEEEEEEC-SSCCCEEEECSSSS-------------CEEE
T ss_pred cceeeEecCCCCCEEEEE--cCeEEEEECccC--------eEEEEEcC-CCCccceEECCCCC-------------EEEE
Confidence 567777765 4 67766 889999999874 44444442 34577999999998 6777
Q ss_pred cccCCcEEEEEeC
Q 041325 438 GSLDCEIKIWQIR 450 (450)
Q Consensus 438 ~~~Dg~i~iw~l~ 450 (450)
++.++.|++||++
T Consensus 312 ~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 312 GGTFNDLAVFNPD 324 (349)
T ss_dssp ESBSSEEEEEETT
T ss_pred ecCCCeEEEEecc
Confidence 8889999999974
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=173.08 Aligned_cols=228 Identities=8% Similarity=0.079 Sum_probs=165.0
Q ss_pred CCceEEEEEeCCe--EEEEeC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 127 GDAVKSLVVLGDK--LFSAHQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 127 ~~~v~~l~~~~~~--l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
..+|.+++|++|+ |+.++. ||++++|+++.+...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~------------------------------------------- 57 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV------------------------------------------- 57 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-------------------------------------------
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-------------------------------------------
Confidence 3579999999876 887776 999999998665210
Q ss_pred eeeecCC-CceEEEEEccCCCEEEEEeC---CCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 204 CTWVHHV-DTVSALALSSDGSLLYSTSW---DRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 204 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
.+..|. ..+..++|+|+ +++++++. +...++|.+.. +... .+. ....+...+|+|+++..+++...++
T Consensus 58 -~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~--~~~~~~~~~~s~dg~~~~~~s~~~~ 132 (582)
T 3o4h_A 58 -KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE--AVKPMRILSGVDTGEAVVFTGATED 132 (582)
T ss_dssp -ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECT--TSCSBEEEEEEECSSCEEEEEECSS
T ss_pred -eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-ccc--CCCCceeeeeCCCCCeEEEEecCCC
Confidence 111233 57889999999 77777765 45556655432 2222 333 2223446688887777666666666
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
.+.+||+.+++. .. +..+.. .+++|+|||++|++++.+ +.|++||+.+++..
T Consensus 133 ~~~l~d~~~g~~--------~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~------------- 188 (582)
T 3o4h_A 133 RVALYALDGGGL--------RE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR------------- 188 (582)
T ss_dssp CEEEEEEETTEE--------EE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-------------
T ss_pred CceEEEccCCcE--------EE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-------------
Confidence 677999876651 11 112222 789999999999988877 78999999877532
Q ss_pred ccccCCccceEEEEEeCC--eEEEEeCCC--eEEEeeCCCCccccCCCceeEEEecCCCcceEEEE--------EEecCC
Q 041325 353 GALRGHTKAILCLAVVSN--LLFSGSSDN--TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT--------AVVDSD 420 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~--~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--------~~~~~~ 420 (450)
.+..|...+..++|+++ .|+++..++ .|++||+.++ +.. .+.+|...+..++ |+||+.
T Consensus 189 -~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~ 258 (582)
T 3o4h_A 189 -VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG--------SVE-DLELPSKDFSSYRPTAITWLGYLPDGR 258 (582)
T ss_dssp -EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC--------CEE-ECCCSCSHHHHHCCSEEEEEEECTTSC
T ss_pred -EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC--------cEE-EccCCCcChhhhhhccccceeEcCCCc
Confidence 45677788899999855 888888888 8999999874 333 6677877777777 999997
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++++++.||.++||++
T Consensus 259 -------------~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 259 -------------LAVVARREGRSAVFID 274 (582)
T ss_dssp -------------EEEEEEETTEEEEEET
T ss_pred -------------EEEEEEcCCcEEEEEE
Confidence 9999999999999985
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-17 Score=145.71 Aligned_cols=281 Identities=14% Similarity=0.160 Sum_probs=170.1
Q ss_pred CCcceEEEEE--eCCEEEEeeCC----CcEEEecCCC--CCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEe-
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSN----GEIRAWNRDP--NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAH- 144 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~d----g~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~- 144 (450)
|...+..++| ||++|++++.+ |.|.+|+++. ++..... ....+......+++.++.|++++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~----------~~~~~~~~p~~~~~dg~~l~~~~~ 117 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN----------TQKTMGADPCYLTTNGKNIVTANY 117 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE----------EEECSSSCEEEEEECSSEEEEEET
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee----------EeccCCCCcEEEEECCCEEEEEEC
Confidence 5677778888 79999999886 7999998865 3332221 12234556777888444466555
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.++.|.+|++......... ......... .......+...+.+++|+|+|++
T Consensus 118 ~~~~v~~~~~~~~g~~~~~----------~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPA----------SDVIEFKGS-------------------GPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSC----------SEEEECCCC-------------------CSCTTTCSSCCEEEEEECTTSSE
T ss_pred CCCEEEEEEeCCCCcCccc----------ceeEEccCC-------------------CCCccccCCCcceEEEECCCCCE
Confidence 6889999999754211000 000000000 00000013345788999999997
Q ss_pred EEEEe-CCCcEEEEecCCCeE------E------EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 225 LYSTS-WDRTFKIWRTSDFRC------L------ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 225 l~~~~-~dg~i~iwd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+++++ .++.|.+|++..... + ..........+..++|+|++..++++...++.|.+||+.++....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~- 247 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE- 247 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-
Confidence 76655 588999998875431 1 222224456678999998665444555579999999987553110
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC--CcEEEEEcC--CCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--RSILVWERD--QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
...+.....+......++|+|||++|+++..+ +.|.+|++. +++.. ....+.. ...+.+++|
T Consensus 248 --~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~-----------~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 248 --IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT-----------KVGYQLT-GIHPRNFII 313 (361)
T ss_dssp --EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE-----------EEEEEEC-SSCCCEEEE
T ss_pred --eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE-----------EeeEecC-CCCCceEEE
Confidence 00111222233456899999999998776654 899999996 33321 1122222 345678888
Q ss_pred eC--CeEEEEe-CCCeEEEeeCC--CCccccCCCceeEEEe-cCCCcceEEEEEE
Q 041325 368 VS--NLLFSGS-SDNTIRIWRRS--SSVTDHQKGYSCLAVL-EGHRRPVKCLTAV 416 (450)
Q Consensus 368 ~~--~~l~s~~-~dg~v~iwd~~--~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~ 416 (450)
++ ++|++++ .++.|.+|++. ++ +..... ..+...+.||.|.
T Consensus 314 spdg~~l~~~~~~~~~v~v~~~d~~~g--------~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQIFERDQATG--------LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTSCEEEEEETTTTEEEEEEECTTTC--------CEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCC--------cEeecceeeeCCCCeEEEEc
Confidence 84 4677776 67899997654 32 222211 1234568888875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-18 Score=152.97 Aligned_cols=287 Identities=9% Similarity=0.025 Sum_probs=180.2
Q ss_pred ccceeeeEEeecCCCcceEE-----EEE--eCCEEEEeeC-CC--cEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 61 SEHQCSATLKVKGNSSYIPS-----LAI--AGKLLYGGSS-NG--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~-----~~~--d~~~l~tgs~-dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
.++..+..+. .|...... .+| ||++|+.++. +| .|.+||+.+++.... ..++...+
T Consensus 18 ~~g~~~~~lt--~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------t~~~~~~~ 83 (388)
T 3pe7_A 18 STGAQVTRLT--PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------TEGRGDNT 83 (388)
T ss_dssp TTCCEEEECS--CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------CCSSCBCS
T ss_pred CCCcceEEec--CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------eeCCCCCc
Confidence 3345566666 67665555 566 8999998887 67 488889988876554 33455555
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
..+.|+|++ |+.++.++.|++||+.+++.... . ..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~--------------~-----------------------------~~ 120 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV--------------Y-----------------------------QV 120 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--------------E-----------------------------EC
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCcceee--------------e-----------------------------ec
Confidence 567899887 88888899999999998743111 0 11
Q ss_pred CCCceEEE--EEccCCCEEEEE----------------------eCCCcEEEEecCCCeEEEEeecccccceEEEEEee-
Q 041325 209 HVDTVSAL--ALSSDGSLLYST----------------------SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK- 263 (450)
Q Consensus 209 ~~~~v~~~--~~~~~~~~l~~~----------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~- 263 (450)
+...+... .+++++++++.. ..+..|.+||+.+++..... .+...+..+.|+|
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL--QENQWLGHPIYRPY 198 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETT
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee--cCCccccccEECCC
Confidence 22223222 347788777642 24478999999988755444 3566789999998
Q ss_pred cCCcEEEEEcC------CCcEEEEeCcchhhhccccchhhhhHhhcc--cceEEEEEcCCCCEEEEeeC-CC----cEEE
Q 041325 264 SNDGFVYTGSA------DTKIKVWKKLRAALQVNKKHSLVQTLEKHK--SAVTALALSTDGTVLYSGAC-DR----SILV 330 (450)
Q Consensus 264 ~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~g~~-dg----~i~v 330 (450)
++. .|+.... ...|.++|...+. ...+..+. ..+..++|+|||+.|+..+. ++ .|++
T Consensus 199 dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 199 DDS-TVAFCHEGPHDLVDARMWLINEDGTN---------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEE-EEEEEECSCTTTSSCSEEEEETTSCC---------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred CCC-EEEEEEecCCCCCcceEEEEeCCCCc---------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 655 4444433 3377788875443 11222222 35778899999997765443 22 3999
Q ss_pred EEcCCCceeeeCCCCCCceeeeccccCCccc---e--EEEEEeCCeEEEE---------eCCCeEEEeeCCCCccccCCC
Q 041325 331 WERDQGNYIVDGDDDSGHMVLKGALRGHTKA---I--LCLAVVSNLLFSG---------SSDNTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v--~~~~~~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~ 396 (450)
||+.+++... .....++... . ..++.+++.|+.. ..+..|++||+.++
T Consensus 269 ~d~~~g~~~~-----------l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~------- 330 (388)
T 3pe7_A 269 ADPETLENRQ-----------LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG------- 330 (388)
T ss_dssp ECTTTCCEEE-----------EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT-------
T ss_pred EecCCCceEE-----------EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC-------
Confidence 9999876321 1111111000 0 1344445555533 45678999999864
Q ss_pred ceeEEEecCCCc-----------ceEEEEEEecCCCCCCCCCCCCceEEEE-EcccCCcEEEEEe
Q 041325 397 YSCLAVLEGHRR-----------PVKCLTAVVDSDYSNRNSDHSSTSFLVY-SGSLDCEIKIWQI 449 (450)
Q Consensus 397 ~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~~~~~~~~~l~-s~~~Dg~i~iw~l 449 (450)
....+..|.. .+.+++|+||++ .|+ ++..+|...||.+
T Consensus 331 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~-------------~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 331 --TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDK-------------QILFTSDVHGKPALYLA 380 (388)
T ss_dssp --EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSS-------------EEEEEECTTSSCEEEEE
T ss_pred --ceEEeccccCcccccccccccCCCCccCCCCCC-------------EEEEEecCCCceeEEEE
Confidence 2334444544 578889999998 555 4556888888865
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-18 Score=150.84 Aligned_cols=253 Identities=7% Similarity=0.076 Sum_probs=170.0
Q ss_pred CCCCccceeeeEEeecCCCc-ceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 57 APAASEHQCSATLKVKGNSS-YIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~-~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
.....+++.++.+.. ++.. .+.+++| |++++ +++..++.|.+||+.+++........... .|...+..
T Consensus 15 ~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~ 86 (337)
T 1pby_B 15 VIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-------ERVKSLFG 86 (337)
T ss_dssp EEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT-------EEEECTTC
T ss_pred EEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc-------cccccccc
Confidence 334455677777763 2222 4778888 67665 55666899999999988866542211000 01235778
Q ss_pred EEEeCCe--EEEEe------------CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 133 LVVLGDK--LFSAH------------QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 133 l~~~~~~--l~s~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
++|++++ ++++. .++.|.+||+.+++. ...++
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------------~~~~~------------------ 132 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----------------RKAFE------------------ 132 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----------------EEEEE------------------
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE----------------EEEEe------------------
Confidence 9999776 66664 579999999987732 11111
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc-ccceEEEEEeecCCcEEEEEcCCC-
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH-DDAINAIVVSKSNDGFVYTGSADT- 276 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg- 276 (450)
....+.+++|+|++++++++ ++.|.+||+.+++....+.... ..+ +.|+|++..+++++..++
T Consensus 133 ----------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~ 197 (337)
T 1pby_B 133 ----------APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp ----------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTE
T ss_pred ----------CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCc
Confidence 12356788999999988887 6899999999999887776322 122 266775553444433333
Q ss_pred ----------------------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 277 ----------------------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 277 ----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
.|.+||+.+++.. ...+..+...+..++|+|++++++++ ++.|++||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-------MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-------EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eeeeeeccccccccccccccccceEEEeCCCCCce-------EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 4688998776521 11223345678899999999999988 7999999999
Q ss_pred CCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 335 QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
+++.+. .+. ....+.+++|++ ++|++++.++.|++||+.++
T Consensus 269 ~~~~~~-------------~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 269 KNASIK-------------RVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TTEEEE-------------EEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCcCcc-------------eec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 876542 121 123467788874 57888889999999999874
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-17 Score=146.78 Aligned_cols=278 Identities=12% Similarity=0.104 Sum_probs=170.4
Q ss_pred EEEEeeCC--CcEEEecC--CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcC-CCce
Q 041325 87 LLYGGSSN--GEIRAWNR--DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKID-NNTS 159 (450)
Q Consensus 87 ~l~tgs~d--g~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~-~~~~ 159 (450)
+++.|+.. +.|.+|++ .++++...... ..+....+..++|++++ |++++.+ .|.+|++. +++.
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~---------~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~ 73 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRT---------EIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI 73 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEE---------ECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEE---------ccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE
Confidence 35556543 56887765 44443322100 01233478899999877 7788877 99999997 5522
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE--EEEEe--------
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL--LYSTS-------- 229 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~-------- 229 (450)
... .. ...+ +.+..++|+|+|++ ++++.
T Consensus 74 ~~~--------------~~---------------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 74 VHE--------------AS---------------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp EEE--------------EE---------------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred EEe--------------eE---------------------------eecC-CCCccEEECCCCCEEEEEEecCCcceecc
Confidence 100 00 0001 12445789999984 44543
Q ss_pred -----CCCcEEEEecC-CCeEEEEeec---ccccceEEEEEeecCCcEEEEE-cCCCcEEEEeCc-chhhhccccchhhh
Q 041325 230 -----WDRTFKIWRTS-DFRCLESVKN---AHDDAINAIVVSKSNDGFVYTG-SADTKIKVWKKL-RAALQVNKKHSLVQ 298 (450)
Q Consensus 230 -----~dg~i~iwd~~-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~-~~~~~~~~~~~~~~ 298 (450)
.+|.+.+|++. +++....+.. .+...+.+++|+|+++ +++++ ..++.|++||+. +++.. .+.
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~------~~~ 184 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVE------LVG 184 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEE------EEE
T ss_pred ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEE------Eee
Confidence 68999999997 4655443331 2456789999999665 45544 457899999987 44311 111
Q ss_pred hHh--hcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcC--CCceeeeCCCCCCceeeeccc----cCCcc------ceE
Q 041325 299 TLE--KHKSAVTALALSTDGTVLYSGAC-DRSILVWERD--QGNYIVDGDDDSGHMVLKGAL----RGHTK------AIL 363 (450)
Q Consensus 299 ~~~--~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~------~v~ 363 (450)
.+. .+...+..++|+|||++|++++. ++.|.+|++. +++.... ......+ .+|.. .+.
T Consensus 185 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT-------HHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-------EEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc-------cceEEcCCCCcCCcccccccccccc
Confidence 121 13456899999999999988775 6899999875 4442100 0000111 22332 577
Q ss_pred EEE-EeCC--eEEEEeCC-C-----eEEEeeCC-CCccccCCCceeEE-EecCCCcceEEEEEEe---cCCCCCCCCCCC
Q 041325 364 CLA-VVSN--LLFSGSSD-N-----TIRIWRRS-SSVTDHQKGYSCLA-VLEGHRRPVKCLTAVV---DSDYSNRNSDHS 429 (450)
Q Consensus 364 ~~~-~~~~--~l~s~~~d-g-----~v~iwd~~-~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~---~~~~~~~~~~~~ 429 (450)
.++ |+++ +|++++.+ + .|.+|++. ++ ....+. ....+...+..++|+| +++
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------~~~~~~~~~~~~~~~~~~~a~sp~~~dg~--------- 322 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG------SIEKQLFLSPTPTSGGHSNAVSPCPWSDE--------- 322 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS------CEEEEEEEEECSSCCTTCCCEEECTTCTT---------
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC------CEEEeeeeeecCCCCcccceecCCCcCCC---------
Confidence 888 8754 66665543 2 89999986 32 112111 2333555677899999 788
Q ss_pred CceEEEEEccc-CCcEEEEEe
Q 041325 430 STSFLVYSGSL-DCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~-Dg~i~iw~l 449 (450)
+|++++. ++.|.+|++
T Consensus 323 ----~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 323 ----WMAITDDQEGWLEIYRW 339 (365)
T ss_dssp ----EEEEECSSSCEEEEEEE
T ss_pred ----EEEEEEcCCCeEEEEEE
Confidence 7888776 589999986
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-18 Score=166.37 Aligned_cols=305 Identities=12% Similarity=0.048 Sum_probs=186.3
Q ss_pred CCCccceeeeEEeecCCCc---ceEEEEE--eCCEEEEeeC---------CCcEEEecCCCCCceeeeecCCCCcceeEE
Q 041325 58 PAASEHQCSATLKVKGNSS---YIPSLAI--AGKLLYGGSS---------NGEIRAWNRDPNNYVNITSTDVGDHANVVA 123 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~---~v~~~~~--d~~~l~tgs~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 123 (450)
.....+++.+.+. +|.. .|.+++| ||++|++++. ++.|++||+.+++....
T Consensus 41 ~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~------------- 105 (719)
T 1z68_A 41 YNIETGQSYTILS--NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG------------- 105 (719)
T ss_dssp EESSSCCEEEEEC--HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------------
T ss_pred EEcCCCcEEEEEc--cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------------
Confidence 3344556655555 4544 3889999 8999999876 78999999998875211
Q ss_pred ecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
..-...+..++|+||+ |+.+ .|+.|++|++.++........+.
T Consensus 106 ~~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~---------------------------------- 150 (719)
T 1z68_A 106 NELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNGR---------------------------------- 150 (719)
T ss_dssp SCCCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCCB----------------------------------
T ss_pred eecCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCCC----------------------------------
Confidence 0012468889999988 6665 47899999998874321110000
Q ss_pred ceeeeecCCCc---------eEEEEEccCCCEEEEEeCCC----------------------------------cEEEEe
Q 041325 202 KKCTWVHHVDT---------VSALALSSDGSLLYSTSWDR----------------------------------TFKIWR 238 (450)
Q Consensus 202 ~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd 238 (450)
....+.++.+. ..+++|+|||++|+.++.|. .|++||
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 00011123222 25899999999999987552 788999
Q ss_pred cCCCeEE--EEee-----cccccceEEEEEeecCCcEEEEEcCC----CcEEEEe----CcchhhhccccchhhhhH---
Q 041325 239 TSDFRCL--ESVK-----NAHDDAINAIVVSKSNDGFVYTGSAD----TKIKVWK----KLRAALQVNKKHSLVQTL--- 300 (450)
Q Consensus 239 ~~~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd----~~~~~~~~~~~~~~~~~~--- 300 (450)
+.+++.. ..+. ..+...+..++|+|+ +.++++.... ..|.+|| +.+++ ....+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--------~~~~~~~~ 301 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWD--------CPKTQEHI 301 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEE--------CCGGGEEE
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCc--------eEEEEecc
Confidence 9987642 1221 146778999999996 4455553322 2488889 66554 22233
Q ss_pred -hhcccceE-----EEEEcCCCCEEEE--eeCCC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE-eC
Q 041325 301 -EKHKSAVT-----ALALSTDGTVLYS--GACDR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV-VS 369 (450)
Q Consensus 301 -~~~~~~i~-----~l~~~~~~~~l~~--g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~ 369 (450)
..+...+. .++|+|||+.|+. ...+| .|.+||+.+++. ..+..+...+..+.+ ++
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~--------------~~lt~~~~~v~~~~~~d~ 367 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA--------------IQITSGKWEAINIFRVTQ 367 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC--------------EECSCSSSCEEEEEEECS
T ss_pred cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce--------------EecccCceEEEEEEEEeC
Confidence 24555565 7899999996554 44555 567777765542 123334444554443 45
Q ss_pred CeEEEEeC-----CCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC--
Q 041325 370 NLLFSGSS-----DNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD-- 441 (450)
Q Consensus 370 ~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D-- 441 (450)
+.|+..+. ++.+++|.+..... ....+++.. +.+|...+..+.|+++++. ++++++.+
T Consensus 368 ~~i~~~~~~~~~~~~~~~l~~~~~~~g--~~~~~~l~~~~~~~~~~~~~~~~s~dg~~------------l~~~~s~~~~ 433 (719)
T 1z68_A 368 DSLFYSSNEFEEYPGRRNIYRISIGSY--PPSKKCVTCHLRKERCQYYTASFSDYAKY------------YALVCYGPGI 433 (719)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEECSSS--SCCEEESSTTTTTTTBCBEEEEECGGGSS------------EEEEECCBSS
T ss_pred CEEEEEEecCCCCCceEEEEEEeCCCC--CCCceeccCccCCCCCceEEEEECCCCCE------------EEEEcCCCCC
Confidence 55555554 48889998764100 000111111 2236677889999999884 44444444
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
..+.+||+
T Consensus 434 p~~~l~d~ 441 (719)
T 1z68_A 434 PISTLHDG 441 (719)
T ss_dssp CEEEEECS
T ss_pred CeEEEEEC
Confidence 45677765
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-16 Score=152.91 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=153.1
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC-----ceEEEEEeCCe--EEEEeCC-
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD-----AVKSLVVLGDK--LFSAHQD- 146 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~--l~s~~~d- 146 (450)
...+++| ||++++++ ||.|++||+.+++.... +.+|.. ....+.|+||+ |+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE------------ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE------------EechhhhhhcccccceEECCCCCEEEEEECCe
Confidence 4557888 78888886 89999999999886554 334432 23458889888 7777665
Q ss_pred --------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 147 --------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 147 --------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+.+.+||+.+++.. .+..|...+...+|
T Consensus 84 ~~~r~~~~~~~~~~d~~~~~~~--------------------------------------------~l~~~~~~~~~~~~ 119 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKRQLI--------------------------------------------TEERIPNNTQWVTW 119 (740)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC--------------------------------------------CSSCCCTTEEEEEE
T ss_pred eeEEEccceEEEEEECCCCcEE--------------------------------------------EcccCCCcceeeEE
Confidence 56779999988321 11235667999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccce-----------------EEEEEeecCCcEEEEEcC-CC----
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAI-----------------NAIVVSKSNDGFVYTGSA-DT---- 276 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~l~~~~~-dg---- 276 (450)
+|||+.|+.+. ++.|.+||+.+++.......++...+ ..+.|+|+++ .|+.++. ++
T Consensus 120 SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 120 SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPL 197 (740)
T ss_dssp CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCE
T ss_pred CCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCce
Confidence 99999999885 78999999988875543222222222 3588999666 5554432 11
Q ss_pred -------------------------------cEEEEeCcc---hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 277 -------------------------------KIKVWKKLR---AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 277 -------------------------------~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
.|++||+.+ ++............+.++...+..++|+|||+.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 477788766 4200000000111223477789999999999976655
Q ss_pred eC----CCcEEEEEcCCCc----eeeeCCCCCCceeeeccc--cCCccceE-----EEEEeCC--eEE-EEe-CCC--eE
Q 041325 323 AC----DRSILVWERDQGN----YIVDGDDDSGHMVLKGAL--RGHTKAIL-----CLAVVSN--LLF-SGS-SDN--TI 381 (450)
Q Consensus 323 ~~----dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~v~-----~~~~~~~--~l~-s~~-~dg--~v 381 (450)
.. +..|++||+.+++ +.. ...+ ..|...|. ...|+++ .|+ ..+ .+| .|
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~-----------~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLV-----------ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECG-----------GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred eCCCCCEEEEEEEECCCCccccceeE-----------EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence 33 3479999999876 220 0111 23443332 5667744 544 454 444 57
Q ss_pred EEeeCCCC
Q 041325 382 RIWRRSSS 389 (450)
Q Consensus 382 ~iwd~~~~ 389 (450)
++||...+
T Consensus 347 ~~~~~~~~ 354 (740)
T 4a5s_A 347 CYFQIDKK 354 (740)
T ss_dssp EEEETTCS
T ss_pred EEEECCCC
Confidence 88887753
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-14 Score=129.33 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=142.9
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-EEEEee--------cccccceEEEEEeecCCcEEEEEc-CCCcE
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-CLESVK--------NAHDDAINAIVVSKSNDGFVYTGS-ADTKI 278 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i 278 (450)
+-.....++++++|+++++...++.|++||..... .+..+. ..+......++++|.+..++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 34468899999999988888889999999986542 444442 133446889999984455677775 68999
Q ss_pred EEEeCcchhhhccccchhhhhHh----------hcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLE----------KHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~----------~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
++||.. +. .+..+. .+-.....++++|+ ++++++...++.|++||..+++.+..+
T Consensus 169 ~~~~~~-g~--------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~----- 234 (329)
T 3fvz_A 169 VQFSPS-GK--------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI----- 234 (329)
T ss_dssp EEECTT-SC--------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-----
T ss_pred EEEcCC-CC--------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-----
Confidence 999943 32 122221 22344789999998 777777778999999999977765321
Q ss_pred ceeeeccccCCccceEEEEEeCCeEE--------EEeCCCeEEEeeCCCCccccCCCceeEEEe---cCCCcceEEEEEE
Q 041325 348 HMVLKGALRGHTKAILCLAVVSNLLF--------SGSSDNTIRIWRRSSSVTDHQKGYSCLAVL---EGHRRPVKCLTAV 416 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~l~--------s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~ 416 (450)
....+...+.++++.+..++ +...+..|++||..++ +.+..+ .++...+..|+++
T Consensus 235 ------~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g--------~~~~~~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 235 ------KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG--------EIIDVFKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp ------CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC--------CEEEEECCSSSCCSSEEEEEEC
T ss_pred ------eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC--------eEEEEEcCCCCccCCeeEEEEC
Confidence 11234455667777664332 3334558999998875 455555 3677789999999
Q ss_pred ecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++. ++++...++.|++|++
T Consensus 301 ~dG~-------------lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 301 EDGT-------------VYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TTSE-------------EEEEESSSCCEEEEEE
T ss_pred CCCC-------------EEEEECCCCEEEEEeC
Confidence 9997 8999999999999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=135.50 Aligned_cols=272 Identities=11% Similarity=0.109 Sum_probs=169.3
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CCCeEEEEEcCCCcee
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QDHKIRVWKIDNNTSA 160 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iw~~~~~~~~ 160 (450)
.|+.|.+||..+++.... +..+..+ .++|++++ ++++. .++.|.+||..+.+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~------------i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~- 93 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGM------------VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF- 93 (361)
T ss_dssp GGCEEEEEETTTCCEEEE------------EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-
T ss_pred ccCeEEEEECCCCeEEEE------------ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-
Confidence 478999999988886544 2333334 89999887 66664 367899999987733
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC--CCcEEEEe
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW--DRTFKIWR 238 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd 238 (450)
+..++..... ..+......++++|+|++|+++.. ++.|.+||
T Consensus 94 ---------------~~~i~~~~~~---------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d 137 (361)
T 2oiz_A 94 ---------------EKEISLPPKR---------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVD 137 (361)
T ss_dssp ---------------EEEEEECTTB---------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEE
T ss_pred ---------------EEEEEcCccc---------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEE
Confidence 2222110000 012234677999999999998864 68999999
Q ss_pred cCCCeEEEE-eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-hhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 239 TSDFRCLES-VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-AALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
+.+++.+.. +. .. ....+.+.|.+...+++.+.||.+.+|+... ++... .......+.....+ ..+.+++++
T Consensus 138 ~~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~--~~~~~~~~~~~~~~-~~~~~~~~g 211 (361)
T 2oiz_A 138 VAKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS--QSRSKQMFSVKDDP-IFIAPALDK 211 (361)
T ss_dssp TTTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE--EEECCCCSCTTTSC-BCSCCEECS
T ss_pred CCCCcEEEEEec--CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee--eccccceEcCCCCc-eEEEecccC
Confidence 999988877 64 22 2233556775556788888999999998754 22100 00000111111222 123446777
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec----cccCCccceEEEEEe--CCeEEEEeC-----------CC
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG----ALRGHTKAILCLAVV--SNLLFSGSS-----------DN 379 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~-----------dg 379 (450)
..++..+.++.|.++|+...+..... ...... ...........++++ ++.++++.. ++
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDG-----PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEE-----EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred CEEEEEeCCCeEEEEEecCCCceecc-----cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 77777788999999998754321000 000000 000000111124555 345554432 35
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.|.+||+.+. +.+..+..+. +.+++|+|+++ +|++++. +.|.+||++
T Consensus 287 ~v~viD~~t~--------~~v~~i~~~~--p~~ia~spdg~-------------~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 287 EIWVMDTKTK--------QRVARIPGRD--ALSMTIDQQRN-------------LMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEEEETTTT--------EEEEEEECTT--CCEEEEETTTT-------------EEEEECS-SCEEEEECS
T ss_pred eEEEEECCCC--------cEEEEEecCC--eeEEEECCCCC-------------EEEEeCC-CeEEEEECC
Confidence 8999999874 7778887776 99999999999 8888876 999999964
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-14 Score=126.26 Aligned_cols=241 Identities=11% Similarity=0.212 Sum_probs=161.7
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
++-..+.+++++++. +++...++.|.+||.+.... ..+....
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-----------------~~~~~~~------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-----------------FQFGECG------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-----------------EEECCBS-------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-----------------EEecccC-------------------
Confidence 444678999998766 55557789999999874311 1110000
Q ss_pred eeeeecCCCceEEEEE-ccCCCEEEEEeC-CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 203 KCTWVHHVDTVSALAL-SSDGSLLYSTSW-DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~-~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
...++...+..+++ .++++++++... ++.|.+|| .+++.+..+...+...+..+++.+++ .++++...++.|.+
T Consensus 71 --~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 71 --KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVII 146 (286)
T ss_dssp --SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred --CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEE
Confidence 00023446889999 467776666543 88999999 56777776654445678999999854 47777778899999
Q ss_pred EeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 281 WKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
||..... ...+ ..+...+..++++++|+++++...++.|++||.. ++.+.. ....++
T Consensus 147 ~~~~g~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-----------~~~~g~ 205 (286)
T 1q7f_A 147 FDQNGNV---------LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQ-----------IGGEGI 205 (286)
T ss_dssp ECTTSCE---------EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEE-----------ESCTTT
T ss_pred EcCCCCE---------EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEE-----------EccCCc
Confidence 9964321 1111 1234568999999999988888889999999975 333311 111222
Q ss_pred ccceEEEEEeC--CeEEEEeCCC-eEEEeeCCCCccccCCCceeEEEecCCC--cceEEEEEEecCCCCCCCCCCCCceE
Q 041325 359 TKAILCLAVVS--NLLFSGSSDN-TIRIWRRSSSVTDHQKGYSCLAVLEGHR--RPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 359 ~~~v~~~~~~~--~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
...+..+++++ +++++...++ .|.+||... +.+..+..+. ..+.++++.+++.
T Consensus 206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---------~~~~~~~~~~~~~~~~~i~~~~~g~------------- 263 (286)
T 1q7f_A 206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---------QLISALESKVKHAQCFDVALMDDGS------------- 263 (286)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---------CEEEEEEESSCCSCEEEEEEETTTE-------------
T ss_pred cCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---------CEEEEEcccCCCCcceeEEECCCCc-------------
Confidence 35678888874 4667776675 999999653 3344444333 3477999999988
Q ss_pred EEEEcccCCcEEEEEe
Q 041325 434 LVYSGSLDCEIKIWQI 449 (450)
Q Consensus 434 ~l~s~~~Dg~i~iw~l 449 (450)
++++ +.|+.|++|++
T Consensus 264 l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 264 VVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEE-ETTTEEEEEEC
T ss_pred EEEE-CCCCeEEEEEc
Confidence 7777 57999999986
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.2e-15 Score=132.45 Aligned_cols=247 Identities=12% Similarity=0.098 Sum_probs=158.7
Q ss_pred CCCccceeeeEEeecCCC-cceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 58 PAASEHQCSATLKVKGNS-SYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~-~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
....+++.++++. .+. ..+..++| |++++ +++..++.|.+||+.+++............ .+...+..+
T Consensus 26 ~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~------~~~~~~~~~ 97 (349)
T 1jmx_B 26 VDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG------EVGRSMYSF 97 (349)
T ss_dssp EETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT------EEEECSSCE
T ss_pred EECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc------cccccccce
Confidence 3445567777777 332 25678888 67765 455678999999999887655422110000 002347889
Q ss_pred EEeCCe--EEEEeCC------------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 134 VVLGDK--LFSAHQD------------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 134 ~~~~~~--l~s~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
+|++++ +++++.+ +.|.+||+.+++.. ..+.
T Consensus 98 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------~~~~---------------------- 142 (349)
T 1jmx_B 98 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------------KPVR---------------------- 142 (349)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------------CCSE----------------------
T ss_pred EECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-------------ceee----------------------
Confidence 999876 7777755 89999999875210 0000
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccccc-----------------------ce
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDD-----------------------AI 256 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------~v 256 (450)
...+...+.+++|+|+++ +++++ +.|.+||+.+++.+..+...... ..
T Consensus 143 ------~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 143 ------TFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp ------EEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ------eccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 012334688899999999 55554 44999999999887776522100 23
Q ss_pred EEEEEeecC----------CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCC
Q 041325 257 NAIVVSKSN----------DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACD 325 (450)
Q Consensus 257 ~~~~~~~~~----------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d 325 (450)
..+++.++. ..++.....++.+++|++. .+...+..++|+| ++++++++ +
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~sp~dg~~l~~~--~ 274 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-----------------DLTELYFTGLRSPKDPNQIYGV--L 274 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-----------------ECSSCEEEEEECSSCTTEEEEE--E
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-----------------cCCCcceeeEecCCCCCEEEEE--c
Confidence 345554321 1123344555666666641 1445678999999 99999988 8
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
+.|.+||+.+++.+. .+. ....+.+++|++ ++|++++.++.|++||..++
T Consensus 275 ~~v~~~d~~~~~~~~-------------~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 275 NRLAKYDLKQRKLIK-------------AAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SEEEEEETTTTEEEE-------------EEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CeEEEEECccCeEEE-------------EEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 899999999877542 111 123356788874 47777888999999999874
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-16 Score=149.98 Aligned_cols=293 Identities=9% Similarity=0.011 Sum_probs=169.9
Q ss_pred CCCcceEEEEEeCCEEE--Ee--eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE---------EEEEe--C
Q 041325 73 GNSSYIPSLAIAGKLLY--GG--SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK---------SLVVL--G 137 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~--tg--s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--~ 137 (450)
+|...+..++++++.++ +. +.++...||....+..... +..|...+. ...|+ |
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~SP 88 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES------------ALPAPWNVRNRVFEYSGFPWAGVPRP 88 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE------------SSCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce------------eCCCCccccccccccCCccceeeeec
Confidence 89999999999766544 34 4478899998543332222 234444444 55565 5
Q ss_pred Ce-E-EEEeC--CCeEEEEEcC--C-CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 138 DK-L-FSAHQ--DHKIRVWKID--N-NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 138 ~~-l-~s~~~--dg~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
|+ . +..+. +..|.+|++. . +.. ..+...+ ...|.
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~--------------~~l~~~~-------------------------~~~~~ 129 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVP--------------RPLTPVS-------------------------AVGGG 129 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCC--------------EECSCCC-------------------------CSTTC
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCC--------------EeccCCc-------------------------cCCCC
Confidence 54 3 33333 4556666654 2 311 0000000 00145
Q ss_pred CceEEEEEccCCCEEEEEeCC----------CcEEEEecCC------CeEEEEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 211 DTVSALALSSDGSLLYSTSWD----------RTFKIWRTSD------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+..++|+|||+.|+.++.+ ..|.+||+.+ ++..... ..+...+..++|+|++. .|+.++.
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~SpDG~-~la~~~~ 207 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS-DDAHRFVTGPRLSPDGR-QAVWLAW 207 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS-CSCSSEECCCEECTTSS-EEEEEEE
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE-ecCCCcccCceECCCCC-EEEEEEC
Confidence 578899999999999998876 5899999987 5543332 12446788899999665 5555543
Q ss_pred C--------CcEEEEeCc-chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC--cEEEEEcCCCceeeeCC
Q 041325 275 D--------TKIKVWKKL-RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR--SILVWERDQGNYIVDGD 343 (450)
Q Consensus 275 d--------g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~ 343 (450)
+ ..|++||+. ++.. .........+...+..++|+|||++++++..++ .|.+||+.+++......
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~~-----~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGRF-----ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSCE-----EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred CCCCCCCCCcEEEEEEECCCCcc-----cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence 3 479999987 3410 001222233467889999999999888888888 66777765655331111
Q ss_pred CCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 344 DDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
...... ...-...+..+++. +.++++++. +.++||.+... ...+..+..|...+..+. ++++..
T Consensus 283 ~~~~~~-----~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~-------~~~~~~l~~~~~~~~~~~-s~~~~~ 348 (662)
T 3azo_A 283 REEEFA-----GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE-------SGELVDAAGPWTEWAATL-TVSGTR 348 (662)
T ss_dssp CSSBSS-----CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT-------TTEEEECCSSCCEEEEEE-EEETTE
T ss_pred cccccc-----CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC-------CCcEEEecCCCCeEEEEE-ecCCCE
Confidence 000000 00000013456775 448888888 99999944321 023566777777777662 445441
Q ss_pred CCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 422 SNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.++++++.+....+|.
T Consensus 349 -----------~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 349 -----------AVGVAASPRTAYEVVE 364 (662)
T ss_dssp -----------EEEEEEETTEEEEEEE
T ss_pred -----------EEEEEcCCCCCCEEEE
Confidence 1455555555555553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=145.24 Aligned_cols=286 Identities=10% Similarity=-0.003 Sum_probs=166.1
Q ss_pred eEEEEE--eCCEEEEeeCC---CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEE
Q 041325 78 IPSLAI--AGKLLYGGSSN---GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIR 150 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 150 (450)
+.+++| ||++|+....+ ..|.+||+.+++.... ..++......+.|+|++ |+.++.++.|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l------------~~~~~~~~~~~~~spdg~~l~~~~~~~~l~ 105 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL------------TEGKGDNTFGGFISTDERAFFYVKNELNLM 105 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC------------CCSSCBCTTTCEECTTSSEEEEEETTTEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe------------ecCCCCccccceECCCCCEEEEEEcCCcEE
Confidence 666777 89998876543 3688889888764433 11222223347789876 88888889999
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc-eEEEeecceeeeecCCCceEEEEEccCCCEEEEE-
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN-YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST- 228 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 228 (450)
+||+.+++.......... ... ... .+++.... .... ....+.++|+++.++..
T Consensus 106 ~~d~~~~~~~~~~~~~~~---~~~--------~g~-~l~~~~~~~~~~~-------------~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 106 KVDLETLEEQVIYTVDEE---WKG--------YGT-WVANSDCTKLVGI-------------EILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp EEETTTCCEEEEEECCTT---EEE--------EEE-EEECTTSSEEEEE-------------EEEGGGCCCCCSHHHHHH
T ss_pred EEECCCCCcEEEEecccc---cCC--------CCC-EEEeccCCccccc-------------cccccccCCCCcceeeee
Confidence 999988754222111100 000 000 00000000 0000 00124578888877654
Q ss_pred ----eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------CcEEEEeCcchhhhccccchhhh
Q 041325 229 ----SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 229 ----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
..+..|.+||+.+++..... .+...+..+.|+|.++..++..+.+ ..|.+||+..++ . .
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--------~-~ 229 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--------V-R 229 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--------C-E
T ss_pred eccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--------e-e
Confidence 45678999999988765544 3567789999998323344443333 368888875443 1 1
Q ss_pred hHhhc--ccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---
Q 041325 299 TLEKH--KSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--- 368 (450)
Q Consensus 299 ~~~~~--~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 368 (450)
.+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++... .....++ . +.|+
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-----------l~~~~~~----~-~~~s~~d 293 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-----------VMVMPPC----S-HLMSNFD 293 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-----------EEECCSE----E-EEEECSS
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-----------eeeCCCC----C-CCccCCC
Confidence 11111 2357889999999988777544 449999998775431 1111121 1 5564
Q ss_pred CCeEEEEe----------------CCCeEEEeeCCCCccccCCCceeEEEecCCCc-----------ceEEEEEEecCCC
Q 041325 369 SNLLFSGS----------------SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR-----------PVKCLTAVVDSDY 421 (450)
Q Consensus 369 ~~~l~s~~----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~ 421 (450)
+++++.++ .++.|++||+.++. ...+..+.. .+..+.|+|+++
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 363 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS---------AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDD- 363 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTB---------CCEEEECCCCCCCBTTBSSTTCCCCEECTTSS-
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCc---------eEEccCCCCccccccccccCCCCCceEccCCC-
Confidence 44666544 34789999988641 122333333 256678999988
Q ss_pred CCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 422 SNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
.|+.++ .++...||.+
T Consensus 364 ------------~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 364 ------------GVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp ------------EEEEEECTTSSCEEEEE
T ss_pred ------------eEEEEecCCCCceEEEE
Confidence 565554 4666677654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-15 Score=130.61 Aligned_cols=254 Identities=11% Similarity=0.123 Sum_probs=165.8
Q ss_pred ceEEEEEeCCEEEEee---------CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC
Q 041325 77 YIPSLAIAGKLLYGGS---------SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ 145 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs---------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 145 (450)
.+...++||++++... .++.|.+||+.+++.... ..+..++|+|++ |+.++.
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----------------~~~~~~~~SpDg~~la~~~~ 78 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----------------ENATMPRISPDGKKIAFMRA 78 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----------------ESCEEEEECTTSSEEEEEEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----------------ccCCCeEECCCCCEEEEEEe
Confidence 3455555888887642 257899999988763221 467889999887 666554
Q ss_pred C---Ce--EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 146 D---HK--IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 146 d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
+ +. |.+|++.+++.. .+..+.. +..++|+|
T Consensus 79 ~~~~~~~~l~~~~~~~g~~~--------------------------------------------~l~~~~~-~~~~~wsp 113 (347)
T 2gop_A 79 NEEKKVSEIWVADLETLSSK--------------------------------------------KILEAKN-IRSLEWNE 113 (347)
T ss_dssp ETTTTEEEEEEEETTTTEEE--------------------------------------------EEEEESE-EEEEEECT
T ss_pred ccCCCcceEEEEECCCCceE--------------------------------------------EEEcCCC-ccceeECC
Confidence 3 33 777777766221 0111223 88899999
Q ss_pred CCCEEEEEeCC---------------------------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc
Q 041325 221 DGSLLYSTSWD---------------------------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 221 ~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
+|+.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|++ +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg--~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK--IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE--EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe--EEEEEe
Confidence 99988887632 5799999998887566652 3 78899999744 666665
Q ss_pred CCC-------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC--------CcEEEEEcCCCce
Q 041325 274 ADT-------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--------RSILVWERDQGNY 338 (450)
Q Consensus 274 ~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--------g~i~vwd~~~~~~ 338 (450)
.++ ...+|.+.+++ ...+..+ ..+..+ +|||++|+.++.+ ..|.+|| +++.
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~---------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~ 254 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGK---------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV 254 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTE---------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE
T ss_pred cccccccccccccEEEeCCCc---------eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce
Confidence 442 44555544322 1112222 344444 9999988877754 3688888 4432
Q ss_pred eeeCCCCCCceeeeccccCCccceEE-EEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILC-LAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
. .....+...+.. +.|+..++++++.++.+++| +.++ +. ..+..+...|.+++|++
T Consensus 255 ~-------------~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g--------~~-~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 255 M-------------GILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDG--------EI-KPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp E-------------ESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESS--------SE-EEEECSSSEEEEEEESS
T ss_pred E-------------eccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCC--------ce-EEEecCCCeEEeeeeeC
Confidence 2 233445566775 77872288889999999999 8742 22 23334577899999998
Q ss_pred cCCCCCCCCCCCCceEEEEEcccCCcE-EEEEe
Q 041325 418 DSDYSNRNSDHSSTSFLVYSGSLDCEI-KIWQI 449 (450)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~s~~~Dg~i-~iw~l 449 (450)
. ++++++.++.. .||.+
T Consensus 312 --~-------------~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 312 --I-------------VVYLKETATRLRELFTW 329 (347)
T ss_dssp --S-------------EEEEEECSSSCCEEEEE
T ss_pred --c-------------EEEEEcCCCChHHheEe
Confidence 5 77777777765 78865
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.4e-16 Score=138.16 Aligned_cols=252 Identities=12% Similarity=0.083 Sum_probs=154.1
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCC-CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe----EEEEe--
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRD-PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK----LFSAH-- 144 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~-- 144 (450)
+...+..+++ ||++|++++.+ .|.+|++. +++...... ...+ +.+..++|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~----------~~~~-g~~~~~~~spdg~~l~~~~~~~~ 105 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS----------HPIG-GHPRANDADTNTRAIFLLAAKQP 105 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE----------EECC-SSGGGGCTTSCCEEEEEEECSST
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE----------eecC-CCCccEEECCCCCEEEEEEecCC
Confidence 4456788888 79999999887 99999987 665433211 1111 124457777765 23442
Q ss_pred -----------CCCeEEEEEcCC-CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 145 -----------QDHKIRVWKIDN-NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 145 -----------~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
.+|.+.+|+++. ++... .+..+. ..+...
T Consensus 106 ~~~~~~~~~~~~~g~v~v~~~~~~g~~~~-------------~~~~~~--------------------------~~~~~~ 146 (365)
T 1jof_A 106 PYAVYANPFYKFAGYGNVFSVSETGKLEK-------------NVQNYE--------------------------YQENTG 146 (365)
T ss_dssp TCCEEEEEESSSCCEEEEEEECTTCCEEE-------------EEEEEE--------------------------CCTTCC
T ss_pred cceeccceeecCCceEEEEccCCCCcCcc-------------eEeeEE--------------------------eCCCCc
Confidence 689999999974 32100 000000 014457
Q ss_pred eEEEEEccCCCEEEEEeC-CCcEEEEecC-CCeEE--EEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc--
Q 041325 213 VSALALSSDGSLLYSTSW-DRTFKIWRTS-DFRCL--ESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-- 285 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 285 (450)
+.+++|+|+|++++++.. ++.|.+||+. +++.. ..+.. .+...+..++|+|+++.++++...++.|.+|++..
T Consensus 147 ~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence 899999999998887764 6799999998 66543 22321 13567899999986553344444578999998653
Q ss_pred hhhhccccchhhhhH----hhccc------ceEEEE-EcCCCCEEEEeeCCC------cEEEEEcC-CCceeeeCCCCCC
Q 041325 286 AALQVNKKHSLVQTL----EKHKS------AVTALA-LSTDGTVLYSGACDR------SILVWERD-QGNYIVDGDDDSG 347 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~----~~~~~------~i~~l~-~~~~~~~l~~g~~dg------~i~vwd~~-~~~~~~~~~~~~~ 347 (450)
++... ....+..+ .++.. .+..++ |+|||++|+++..+. .|.+|++. +++...
T Consensus 227 g~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~------- 297 (365)
T 1jof_A 227 HMPVY--THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK------- 297 (365)
T ss_dssp CCEEE--EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE-------
T ss_pred CcEEE--ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE-------
Confidence 32100 00001111 12222 578999 999999988776432 89999996 444220
Q ss_pred ceeeeccccCCccceEEEEEe-----CCeEEEEeCC-CeEEEeeCCC
Q 041325 348 HMVLKGALRGHTKAILCLAVV-----SNLLFSGSSD-NTIRIWRRSS 388 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~d-g~v~iwd~~~ 388 (450)
.......+...+..++++ +++|++++.+ +.|.+|++..
T Consensus 298 ---~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 298 ---QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ---EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ---eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 000111122223344444 5688888764 8999999875
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.4e-15 Score=129.82 Aligned_cols=251 Identities=10% Similarity=0.100 Sum_probs=170.8
Q ss_pred CcceEEEEE--eCCEEEEeeCC------------------------CcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 75 SSYIPSLAI--AGKLLYGGSSN------------------------GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~d------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
-+.+.++++ +|+++++...+ +.|.+||..+++...... .++-.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-----------~~~~~ 91 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-----------KNLFY 91 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-----------TTTCS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-----------CCccC
Confidence 456899999 68899888877 479999998887654311 13445
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
....+++.+++ +++...++.|++|+.+.... .+..+..... ...-
T Consensus 92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~---------------~~~~~~~~~~------------------~g~~ 138 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG---------------PLLILGRSMQ------------------PGSD 138 (329)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEECTTCSSC---------------CSEEESBTTB------------------CCCS
T ss_pred CceEEEECCCCCEEEEECCCCEEEEEeCCCCeE---------------EEEEecccCC------------------CCCC
Confidence 78899999776 56666789999999865410 0111100000 0000
Q ss_pred ecCCCceEEEEEcc-CCCEEEEEe-CCCcEEEEecCCCeEEEEeec---------ccccceEEEEEeecCCcEEEEEcCC
Q 041325 207 VHHVDTVSALALSS-DGSLLYSTS-WDRTFKIWRTSDFRCLESVKN---------AHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 207 ~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
..+......++++| ++.++++.+ .++.|++|| .+++.+..+.. .+......++++|+.+.++++...+
T Consensus 139 ~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 12444688999999 888888876 699999999 56777666641 1223488999998656678888889
Q ss_pred CcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcC------CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALST------DGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~------~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
+.|++||..+++ .+..+ ..+...+..++++| +|+..++...+..|++||..+++.+..+.
T Consensus 218 ~~I~~~~~~~G~--------~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~---- 285 (329)
T 3fvz_A 218 GRIQCFKTDTKE--------FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK---- 285 (329)
T ss_dssp TEEEEEETTTCC--------EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC----
T ss_pred CEEEEEECCCCc--------EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc----
Confidence 999999987554 22222 23456778899998 44433334445689999999887663211
Q ss_pred ceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 348 HMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
....+.....+++++++ ++++...++.|++|++..
T Consensus 286 ------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 286 ------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ------CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 11345566788999854 778888899999999764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-14 Score=121.41 Aligned_cols=242 Identities=11% Similarity=0.203 Sum_probs=160.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe-EEEEeC--C
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK-LFSAHQ--D 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~~--d 146 (450)
+|-..+.++++ +++++++...++.|.+||.+ ++.......... ..+|...+..+++. ++. ++.+.. +
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~------~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK------RDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS------STTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC------CcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 45567899999 58888888889999999987 443332111000 01344578899994 444 555553 8
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.|++||.+.. . +..+.. .+...+.++++++++++++
T Consensus 100 ~~i~~~d~~g~-~----------------~~~~~~--------------------------~~~~~~~~i~~~~~g~l~v 136 (286)
T 1q7f_A 100 HQIQIYNQYGQ-F----------------VRKFGA--------------------------TILQHPRGVTVDNKGRIIV 136 (286)
T ss_dssp CEEEEECTTSC-E----------------EEEECT--------------------------TTCSCEEEEEECTTSCEEE
T ss_pred CEEEEECCCCc-E----------------EEEecC--------------------------ccCCCceEEEEeCCCCEEE
Confidence 89999994332 1 111100 1334678999999999888
Q ss_pred EEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh--hc
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE--KH 303 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~ 303 (450)
+...++.|.+||.. ++.+..+.. .+...+..++++++ ..++++...++.|++||..... +..+. ++
T Consensus 137 ~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~---------~~~~~~~g~ 205 (286)
T 1q7f_A 137 VECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEGQY---------LRQIGGEGI 205 (286)
T ss_dssp EETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTCCE---------EEEESCTTT
T ss_pred EECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCCCE---------EEEEccCCc
Confidence 87788999999964 555555542 23456899999974 4467777788999999974322 11221 22
Q ss_pred ccceEEEEEcCCCCEEEEeeCCC-cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCe
Q 041325 304 KSAVTALALSTDGTVLYSGACDR-SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNT 380 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~ 380 (450)
...+..++++++|+++++...++ .|.+||.. ++.+.. .........+.+++++++ ++++ +.|+.
T Consensus 206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~-----------~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISA-----------LESKVKHAQCFDVALMDDGSVVLA-SKDYR 272 (286)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEE-----------EEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred cCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEE-----------EcccCCCCcceeEEECCCCcEEEE-CCCCe
Confidence 35688999999999888887776 99999954 443310 111112234678888754 5555 67999
Q ss_pred EEEeeCCC
Q 041325 381 IRIWRRSS 388 (450)
Q Consensus 381 v~iwd~~~ 388 (450)
|++|++..
T Consensus 273 v~v~~~~~ 280 (286)
T 1q7f_A 273 LYIYRYVQ 280 (286)
T ss_dssp EEEEECSC
T ss_pred EEEEEccc
Confidence 99999864
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-15 Score=144.17 Aligned_cols=314 Identities=12% Similarity=0.109 Sum_probs=181.3
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcc-----eEEEEE--eC
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSY-----IPSLAI--AG 85 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~-----v~~~~~--d~ 85 (450)
+..++.|+|++..+.+. +..+ ..+...++++...+. +|... ...++| ||
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i--------------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg 73 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNI--------------------LVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDG 73 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEE--------------------EEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTS
T ss_pred cccccEECCCCcEEEEc--CCcE--------------------EEEECCCCceEEEEe--chhhhhhcccccceEECCCC
Confidence 35577888887655553 2222 233444556666666 66643 223566 89
Q ss_pred CEEEEeeCC---------CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEc
Q 041325 86 KLLYGGSSN---------GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKI 154 (450)
Q Consensus 86 ~~l~tgs~d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~ 154 (450)
++|+.++.+ +.+.+||+.+++... +..|...+...+|+||+ |+.+ .|+.|++|++
T Consensus 74 ~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-------------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~ 139 (740)
T 4a5s_A 74 QFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-------------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIE 139 (740)
T ss_dssp SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred CEEEEEECCeeeEEEccceEEEEEECCCCcEEE-------------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEEC
Confidence 999999876 567799999987543 24566789999999988 6555 5789999999
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC---------CceEEEEEccCCCEE
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV---------DTVSALALSSDGSLL 225 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l 225 (450)
.++........+.. ...+.++. +....+.|+|||+.|
T Consensus 140 ~~~~~~~lt~~g~~----------------------------------~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l 185 (740)
T 4a5s_A 140 PNLPSYRITWTGKE----------------------------------DIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (740)
T ss_dssp TTSCCEECCSCCBT----------------------------------TTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred CCCceEEEcCCCCc----------------------------------cceecCcccccccchhcCCCcceEECCCCCEE
Confidence 88743221111100 00011121 123457788888877
Q ss_pred EEEeCC------------------------------------CcEEEEecCC---Ce--EEEEeec-----ccccceEEE
Q 041325 226 YSTSWD------------------------------------RTFKIWRTSD---FR--CLESVKN-----AHDDAINAI 259 (450)
Q Consensus 226 ~~~~~d------------------------------------g~i~iwd~~~---~~--~~~~~~~-----~~~~~v~~~ 259 (450)
+.++.| ..|.+||+.+ ++ ....+.. .+...+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 776422 1588899988 73 2223331 266789999
Q ss_pred EEeecCCcEEEEEc----CCCcEEEEeCcchhhhccccchhhhhH--hhcccceE-----EEEEcCCCCEEE-EeeC-C-
Q 041325 260 VVSKSNDGFVYTGS----ADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVT-----ALALSTDGTVLY-SGAC-D- 325 (450)
Q Consensus 260 ~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~-----~l~~~~~~~~l~-~g~~-d- 325 (450)
+|+|++. .++... .+..|.+||+.+++.. ........+ ..+...+. ..+|+|||+.|+ ..+. +
T Consensus 266 ~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~--~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G 342 (740)
T 4a5s_A 266 TWATQER-ISLQWLRRIQNYSVMDICDYDESSGR--WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (740)
T ss_dssp EEEETTE-EEEEEEESSTTEEEEEEEEEETTTTE--EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred EEeCCCe-EEEEEeCCCCCEEEEEEEECCCCccc--cceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence 9999654 444332 2347999998776400 000011211 23444443 688999999877 5553 3
Q ss_pred -CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE-EEeCCeEE-EEeC----CCeEEEeeCCCCccccCCCce
Q 041325 326 -RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL-AVVSNLLF-SGSS----DNTIRIWRRSSSVTDHQKGYS 398 (450)
Q Consensus 326 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~-s~~~----dg~v~iwd~~~~~~~~~~~~~ 398 (450)
..|++||..+++.. .+......+..+ .++++.|+ ++.. .+...||.+... ...
T Consensus 343 ~~~l~~~~~~~~~~~--------------~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~------g~~ 402 (740)
T 4a5s_A 343 YRHICYFQIDKKDCT--------------FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLI------DYT 402 (740)
T ss_dssp CEEEEEEETTCSSCE--------------ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETT------EEE
T ss_pred ceEEEEEECCCCceE--------------ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECC------CCC
Confidence 36888888765432 222223344443 36666444 4443 234455544321 011
Q ss_pred eEEEec----CCCcceEEEEEEecCCC
Q 041325 399 CLAVLE----GHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 399 ~~~~~~----~h~~~v~~l~~~~~~~~ 421 (450)
....+. +....+....|+|++++
T Consensus 403 ~~~~lt~~~~~~~~~~~~~~~S~dg~~ 429 (740)
T 4a5s_A 403 KVTCLSCELNPERCQYYSVSFSKEAKY 429 (740)
T ss_dssp EEEESSTTTSTTTBCBEEEEECTTSSE
T ss_pred cceeeccccCCCCCceEEEEECCCCCE
Confidence 111232 23456889999999983
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-12 Score=112.77 Aligned_cols=282 Identities=11% Similarity=0.070 Sum_probs=182.1
Q ss_pred eEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE
Q 041325 67 ATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA 143 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~ 143 (450)
..+.+..+...+.++++ +|+++++...++.|.+||.. ++..... ...+...+.++++.+++ ++.+
T Consensus 6 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-----------~~~~~~~~~~i~~~~~g~l~v~ 73 (299)
T 2z2n_A 6 QELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-----------LPTPDAKVMCLTISSDGEVWFT 73 (299)
T ss_dssp EEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-----------CSSTTCCEEEEEECTTSCEEEE
T ss_pred EEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-----------CCcccCceeeEEECCCCCEEEe
Confidence 34444467788999999 57777776667899999988 5543321 11234678899998766 5544
Q ss_pred e-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 144 H-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 144 ~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
. .++.|..|+.+.. .. .. .++ .....+.++++++++
T Consensus 74 ~~~~~~i~~~~~~g~-~~--------------~~-~~~---------------------------~~~~~~~~i~~~~~g 110 (299)
T 2z2n_A 74 ENAANKIGRITKKGI-IK--------------EY-TLP---------------------------NPDSAPYGITEGPNG 110 (299)
T ss_dssp ETTTTEEEEECTTSC-EE--------------EE-ECS---------------------------STTCCEEEEEECTTS
T ss_pred CCCCCeEEEECCCCc-EE--------------EE-eCC---------------------------CcCCCceeeEECCCC
Confidence 4 4788999987622 10 00 000 123367889999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
.++++...++.|..||. +++............+..+++.+++ .++++...++.|..||. +++... .....
T Consensus 111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~-------~~~~~ 180 (299)
T 2z2n_A 111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITE-------FKIPT 180 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEE-------EECSS
T ss_pred CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEE-------eeCCC
Confidence 88887777889999998 5554433222344568899998643 46666666789999998 443110 01112
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCe
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNT 380 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~ 380 (450)
....+..++++++|++.++...++.|.+||. +++... .....+...+.+++++++ +.++...++.
T Consensus 181 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 181 PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE------------FKIPTPNARPHAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE------------EECSSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE------------EECCCCCCCceeEEECCCCCEEEeccCCce
Confidence 3456789999999997777767889999998 654321 112234456788888743 4455446789
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|..||.. + ......+..+...+.++++ +++. ++++.+ .+.|..++.
T Consensus 248 i~~~d~~-g-------~~~~~~~~~~~~~~~~i~~-~~g~-------------l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 248 IGRLTSN-N-------IIEEYPIQIKSAEPHGICF-DGET-------------IWFAME-CDKIGKLTL 293 (299)
T ss_dssp EEEEETT-T-------EEEEEECSSSSCCEEEEEE-CSSC-------------EEEEET-TTEEEEEEE
T ss_pred EEEECCC-C-------ceEEEeCCCCCCccceEEe-cCCC-------------EEEEec-CCcEEEEEc
Confidence 9999974 2 1111223345567899999 8877 666555 455666654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-14 Score=141.13 Aligned_cols=230 Identities=14% Similarity=0.143 Sum_probs=147.5
Q ss_pred eCCE-EEEeeC-CCcEEEecCC--C-CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC----------
Q 041325 84 AGKL-LYGGSS-NGEIRAWNRD--P-NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD---------- 146 (450)
Q Consensus 84 d~~~-l~tgs~-dg~v~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---------- 146 (450)
||++ |+.++. +..|.+|++. + ++........ ...|...+..++|+||+ |+.++.|
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~--------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS--------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC--------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc--------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 5887 665543 6778888876 3 4432220000 00166788999999887 7777766
Q ss_pred CeEEEEEcCC------CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee-cCCCceEEEEEc
Q 041325 147 HKIRVWKIDN------NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV-HHVDTVSALALS 219 (450)
Q Consensus 147 g~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 219 (450)
..|++||+.+ +... .+. .+...+..++|+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~~~~~~~~~~S 196 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVR--------------------------------------------ELSDDAHRFVTGPRLS 196 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSE--------------------------------------------ESSCSCSSEECCCEEC
T ss_pred eEEEEEECCCCccccCCcee--------------------------------------------EEEecCCCcccCceEC
Confidence 5899999887 3210 111 233467778999
Q ss_pred cCCCEEEEEeCC--------CcEEEEecC-CC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcch
Q 041325 220 SDGSLLYSTSWD--------RTFKIWRTS-DF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRA 286 (450)
Q Consensus 220 ~~~~~l~~~~~d--------g~i~iwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~ 286 (450)
|||++|+.++.+ ..|.+||+. ++ .....+...+...+..+.|+|++. +++++..++ .|.+||+.++
T Consensus 197 pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 197 PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTC
T ss_pred CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCC
Confidence 999999987754 379999998 56 233444424567899999999776 888888888 5666665444
Q ss_pred hhhccccchhhhhHhhccc--------ceEEEEEcCCCCEEEEeeCCCcEEEE--EcCCCceeeeCCCCCCceeeecccc
Q 041325 287 ALQVNKKHSLVQTLEKHKS--------AVTALALSTDGTVLYSGACDRSILVW--ERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~--------~i~~l~~~~~~~~l~~g~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+. ......+.. .+..++|+|++++++++.. +.+++| |+.+++ + ..+.
T Consensus 276 ~~--------~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~-------------~~l~ 332 (662)
T 3azo_A 276 AA--------TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L-------------VDAA 332 (662)
T ss_dssp CE--------EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E-------------EECC
T ss_pred ce--------eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E-------------EEec
Confidence 31 111111111 1467899999999999998 999999 544443 2 3445
Q ss_pred CCccceEEE-EEeCC--eEEEEeCCCe--EEEeeCCCC
Q 041325 357 GHTKAILCL-AVVSN--LLFSGSSDNT--IRIWRRSSS 389 (450)
Q Consensus 357 ~~~~~v~~~-~~~~~--~l~s~~~dg~--v~iwd~~~~ 389 (450)
.|...+..+ +++++ ++++++.+.. |.+||+.++
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 566677777 77777 3344455544 555565543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=123.83 Aligned_cols=283 Identities=11% Similarity=0.088 Sum_probs=176.1
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeEEecC
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGN 126 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h 126 (450)
...+++.+.++. .+..+ .+++ |+++|+++. .++.|.+||..+.+.......... ...+
T Consensus 37 D~~t~~~~~~i~--~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~------~~~~ 106 (361)
T 2oiz_A 37 DYTNGKFLGMVP--TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK------RVQG 106 (361)
T ss_dssp ETTTCCEEEEEE--CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT------BCCB
T ss_pred ECCCCeEEEEec--CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc------cccc
Confidence 445566777777 66665 7888 899999886 367899999988876655321110 0013
Q ss_pred CCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeee-ccCCCcceeEeeecCceEEEeec
Q 041325 127 GDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIAT-LPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 127 ~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
......+++++++ |+++.. +++|.+||+.+.+ .+.. ++
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~----------------~~~~~i~--------------------- 149 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD----------------YVEDVTA--------------------- 149 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE----------------EEEEEGG---------------------
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc----------------EEEEEec---------------------
Confidence 3467789999877 666653 6899999999883 2222 22
Q ss_pred ceeeeecCCCceEEEEEccCC-CEEEEEeCCCcEEEEecCC-CeEEEEee-----cccccceEEEEEeecCCcEEEEEcC
Q 041325 202 KKCTWVHHVDTVSALALSSDG-SLLYSTSWDRTFKIWRTSD-FRCLESVK-----NAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
.. ....+.+.|++ ..+++.+.||.+.+|+... ++...... .....++ .+.+.+++. .++..+.
T Consensus 150 -------~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~ 219 (361)
T 2oiz_A 150 -------AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD-KAHFVSY 219 (361)
T ss_dssp -------GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS-EEEEEBT
T ss_pred -------CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC-EEEEEeC
Confidence 11 11224556654 6777888899999998865 54442211 0111221 223345343 4555567
Q ss_pred CCcEEEEeCcchhhhccccchhhh--hHh--hcccceEEEEEcCCCCEEEEeeC-----------CCcEEEEEcCCCcee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQ--TLE--KHKSAVTALALSTDGTVLYSGAC-----------DRSILVWERDQGNYI 339 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~--~~~--~~~~~i~~l~~~~~~~~l~~g~~-----------dg~i~vwd~~~~~~~ 339 (450)
++.|.++|+............... ... ........++|+|+++.++++.. ++.|.+||+.+++.+
T Consensus 220 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v 299 (361)
T 2oiz_A 220 YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV 299 (361)
T ss_dssp TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence 889999998644311101000000 000 01122223789999888877643 348999999998765
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
..+..+. +.++++++ ++|++++. +.|.+||..++ ..+.+..+..+......++++|
T Consensus 300 -------------~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~------~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 300 -------------ARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP------EPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp -------------EEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS------SCEEEEEETTSCSSEEEEEECC
T ss_pred -------------EEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC------cceeeEEeccCCCCcEEEEecC
Confidence 3444444 78888874 58887776 99999998863 1266777666777788999999
Q ss_pred cCC
Q 041325 418 DSD 420 (450)
Q Consensus 418 ~~~ 420 (450)
++.
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 875
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-14 Score=129.63 Aligned_cols=241 Identities=9% Similarity=-0.031 Sum_probs=148.8
Q ss_pred EecCCCceEE-----EEEeCCe--EEEEeC-CCe--EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeec
Q 041325 123 ATGNGDAVKS-----LVVLGDK--LFSAHQ-DHK--IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA 192 (450)
Q Consensus 123 ~~~h~~~v~~-----l~~~~~~--l~s~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (450)
+..|...... .+|+||+ |+.++. +|. |.+||+.+++.. ...
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~----------------~lt------------- 76 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT----------------QLT------------- 76 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE----------------ECC-------------
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE----------------Eee-------------
Confidence 3445444444 7899877 776666 674 888888877321 111
Q ss_pred CceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEE--eecCCcEEE
Q 041325 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVV--SKSNDGFVY 270 (450)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~ 270 (450)
.++...+....|+|+++.|+.++.++.|.+||+.+++...... .+...+....+ ++++. +++
T Consensus 77 --------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~-~l~ 140 (388)
T 3pe7_A 77 --------------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCT-KLV 140 (388)
T ss_dssp --------------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSS-EEE
T ss_pred --------------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCC-eec
Confidence 1233344467899999999999999999999999988766555 34444444444 44333 443
Q ss_pred E----------------------EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCC--
Q 041325 271 T----------------------GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACD-- 325 (450)
Q Consensus 271 ~----------------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d-- 325 (450)
. ...+..|.+||+.+++ ...+..+...+..++|+| ||+.|+....+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (388)
T 3pe7_A 141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---------STVILQENQWLGHPIYRPYDDSTVAFCHEGPH 211 (388)
T ss_dssp EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred cccccCcccccccccchhhhhhccCCcceEEEEECCCCc---------eEEeecCCccccccEECCCCCCEEEEEEecCC
Confidence 2 2245789999987765 122334556789999999 99998877753
Q ss_pred ----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCc--cceEEEEEeCC--eEEEEeC-CC----eEEEeeCCCCccc
Q 041325 326 ----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT--KAILCLAVVSN--LLFSGSS-DN----TIRIWRRSSSVTD 392 (450)
Q Consensus 326 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~--~l~s~~~-dg----~v~iwd~~~~~~~ 392 (450)
..|.++|...++.. .+..+. ..+....|+++ .|+..+. ++ .|++||+.++.
T Consensus 212 ~~~~~~l~~~d~~~~~~~--------------~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-- 275 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNMR--------------KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE-- 275 (388)
T ss_dssp TTSSCSEEEEETTSCCCE--------------ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC--
T ss_pred CCCcceEEEEeCCCCceE--------------EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc--
Confidence 37888887654321 222232 35677888754 5544332 22 39999998752
Q ss_pred cCCCceeEEEecCCCcc---eEEEEEEecCCCCCCCCCCCCceEEEEEc---------ccCCcEEEEEeC
Q 041325 393 HQKGYSCLAVLEGHRRP---VKCLTAVVDSDYSNRNSDHSSTSFLVYSG---------SLDCEIKIWQIR 450 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~~~~~~~~~~~~~l~s~---------~~Dg~i~iw~l~ 450 (450)
.+.+..+.++... ...+.|+|+++ .|+.. ..+..|++||++
T Consensus 276 ----~~~l~~~~~~~~~~~~~~~~~~spdg~-------------~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 276 ----NRQLTSMPACSHLMSNYDGSLMVGDGS-------------DAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp ----EEEEEEECCEEEEEECTTSSEEEEEEC-------------CC------------CCCCEEEEEETT
T ss_pred ----eEEEEcCCCceeeeecCCCCeEccCCC-------------cceeEeeeccccccCCCCEEEEEecc
Confidence 2333344331111 12237999998 45432 456789999863
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-14 Score=123.99 Aligned_cols=262 Identities=13% Similarity=0.089 Sum_probs=163.5
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-E-EEEeCCCeEEE
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-L-FSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l-~s~~~dg~i~i 151 (450)
..|.+++| ++..++..+.++.++.|. ++.... +..+...+.+++|++++ | +++..++.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~ 70 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLE------------ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFK 70 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEE------------EESSCCCEEEEEECTTSCEEEEETTTCEEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEE------------EeccCccccCcEECCCCCEEEEECCCCEEEE
Confidence 34666677 455566667788888882 222221 44566678999999776 4 46778899999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
||.++++.... ...+...+.+++++++++++++...+
T Consensus 71 ~d~~~~~~~~~-------------------------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~ 107 (333)
T 2dg1_A 71 INPETKEIKRP-------------------------------------------FVSHKANPAAIKIHKDGRLFVCYLGD 107 (333)
T ss_dssp ECTTTCCEEEE-------------------------------------------EECSSSSEEEEEECTTSCEEEEECTT
T ss_pred EeCCCCcEEEE-------------------------------------------eeCCCCCcceEEECCCCcEEEEeCCC
Confidence 99987632110 00234578999999999988877666
Q ss_pred ----CcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcC------CCcEEEEeCcchhhhccccchhhhhH
Q 041325 232 ----RTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSA------DTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 232 ----g~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
+.|.+||..+++....+. ......+..+++.|++ .++++... .+.|..+|...++. ..+
T Consensus 108 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~---------~~~ 177 (333)
T 2dg1_A 108 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV---------TPI 177 (333)
T ss_dssp SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE---------EEE
T ss_pred CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEE---------EEe
Confidence 689999998776543332 1234578999999744 35555443 35566666543321 111
Q ss_pred hhcccceEEEEEcCCCCEEEE-eeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEe
Q 041325 301 EKHKSAVTALALSTDGTVLYS-GACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGS 376 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~-g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 376 (450)
......+..++|+|+++.|+. .+.++.|.+||+.+ ++.+.... ........++ ..+..++++ +++.++..
T Consensus 178 ~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-----~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~ 251 (333)
T 2dg1_A 178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----ATIPYYFTGH-EGPDSCCIDSDDNLYVAMY 251 (333)
T ss_dssp EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----EEEEEECCSS-SEEEEEEEBTTCCEEEEEE
T ss_pred ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc-----ceEEEecCCC-CCCCceEECCCCCEEEEEc
Confidence 123345788999999986654 45678999999863 32211000 0000111222 356778887 44666666
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEEecCCCc------ceEEEEEEecCC
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR------PVKCLTAVVDSD 420 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~------~v~~l~~~~~~~ 420 (450)
.++.|.+||... +.+..+..+.. .+.+++|++++.
T Consensus 252 ~~~~v~~~d~~g---------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 252 GQGRVLVFNKRG---------YPIGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp TTTEEEEECTTS---------CEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred CCCEEEEECCCC---------CEEEEEEcCCCccccccCcceEEECCCCC
Confidence 788999999853 33444443332 689999998876
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.64 E-value=7.5e-13 Score=117.58 Aligned_cols=250 Identities=12% Similarity=0.077 Sum_probs=156.4
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+....+. ++...+.+++| ++++++++..++.|.+||.++++.... ...+...+.++++++++
T Consensus 34 ~~~~~~~~--~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~------------~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 34 AEPWLEIS--KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP------------FVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp CEEEEEEE--SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE------------EECSSSSEEEEEECTTSC
T ss_pred cceeEEEe--ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE------------eeCCCCCcceEEECCCCc
Confidence 45566666 78888899999 688888888899999999988775543 22455689999999776
Q ss_pred EEEEe-CC----CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 140 LFSAH-QD----HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 140 l~s~~-~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
++.++ .+ +.|.+||.+++..... +.. ..+...+.
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~----------------~~~-------------------------~~~~~~~~ 138 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDI----------------IED-------------------------LSTAYCID 138 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEE----------------ECS-------------------------SSSCCCEE
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEE----------------Ecc-------------------------CccCCccc
Confidence 54444 44 5899999887632100 000 01234688
Q ss_pred EEEEccCCCEEEEEeC------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch-h
Q 041325 215 ALALSSDGSLLYSTSW------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA-A 287 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~ 287 (450)
+++++|+|+++++... .+.|..+|..+++..... .....+..++++|++..++++...++.|.+||+... .
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 9999999987776653 356777776654443322 234457889999855545566677889999998532 1
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
............+.++ ..+..++++++|+++++...++.|.+||.. ++.+..... .....+|...+.+++|
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~-------~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILI-------PGRDEGHMLRSTHPQF 287 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEEC-------TTGGGTCSCBCCEEEE
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEc-------CCCccccccCcceEEE
Confidence 0000000000011111 367889999999988888788999999984 443311000 0000122235778888
Q ss_pred eC--CeEEEEeCC
Q 041325 368 VS--NLLFSGSSD 378 (450)
Q Consensus 368 ~~--~~l~s~~~d 378 (450)
++ +.|+.++.+
T Consensus 288 ~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 288 IPGTNQLIICSND 300 (333)
T ss_dssp CTTSCEEEEEEEC
T ss_pred CCCCCEEEEEeCc
Confidence 74 356555544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-13 Score=119.65 Aligned_cols=263 Identities=11% Similarity=0.033 Sum_probs=169.9
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCccccc
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK 171 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 171 (450)
.++.|.++|.++++.......... -.........+.+.++. +++...++.|.+||..+.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n------~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~------------ 76 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRAN------GFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKE------------ 76 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHH------SSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCE------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhc------CcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEE------------
Confidence 489999999998876543210000 00122356778888887 44455579999999998843
Q ss_pred ceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 172 YYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
+..++ .......++++++++++++...++.|.+||..+++....+..+
T Consensus 77 ----~~~i~----------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g 124 (328)
T 3dsm_A 77 ----VGRIT----------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP 124 (328)
T ss_dssp ----EEEEE----------------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred ----EEEcC----------------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence 11111 2235788999888855454448999999999999988777632
Q ss_pred cc----cceEEEEEeecCCcEEEEEc-CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-
Q 041325 252 HD----DAINAIVVSKSNDGFVYTGS-ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD- 325 (450)
Q Consensus 252 ~~----~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d- 325 (450)
.. .....+++. ++.++++.. .++.|.++|..+++ ....+.. ......++++|+|++++++..+
T Consensus 125 ~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~--------~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 125 DMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDK--------VVDELTI-GIQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp TCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTE--------EEEEEEC-SSCBCCCEECTTSEEEEEBCCBC
T ss_pred CccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCe--------EEEEEEc-CCCccceEEcCCCCEEEEECCCc
Confidence 21 145667773 554555544 48899999998765 2222221 2345778999999977776655
Q ss_pred ---------CcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCcccc
Q 041325 326 ---------RSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 326 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
+.|.++|..+++... .+.. .......+++++ ++|+++.. .|.+||..++....
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~-------------~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEK-------------QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEE-------------EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS
T ss_pred cCCccccCCceEEEEECCCCeEEE-------------EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee
Confidence 789999998876441 1111 113567888884 46666554 89999998752210
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc----ccCCcEEEEEe
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG----SLDCEIKIWQI 449 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~----~~Dg~i~iw~l 449 (450)
...+..+......++++|++.. ++++. ..++.|.+||.
T Consensus 259 ------~~~~~~~~~~p~gi~vdp~~g~------------lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 259 ------RPFLEFRDTKYYGLTVNPNNGE------------VYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ------SCSBCCCSSCEEEEEECTTTCC------------EEEEECTTSSSEEEEEEECT
T ss_pred ------eeeecCCCCceEEEEEcCCCCe------------EEEEcccccccCCEEEEECC
Confidence 0111112456889999985442 66666 67889999985
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-12 Score=119.83 Aligned_cols=279 Identities=12% Similarity=0.149 Sum_probs=184.3
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcC--CCce
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKID--NNTS 159 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~--~~~~ 159 (450)
.+.++++...++.|.++|..+++.+.... ....+..+.|++++ +++++.|+.|.+||+. +.+.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~-------------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~ 232 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLD-------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT 232 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEE-------------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEe-------------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE
Confidence 35677778889999999999998776521 22356789999877 8888999999999995 4421
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc----cCCCEEEEEe-CCCcE
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS----SDGSLLYSTS-WDRTF 234 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~-~dg~i 234 (450)
+..++ .......++|+ |+|++++++. .++.|
T Consensus 233 ----------------v~~i~----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v 268 (567)
T 1qks_A 233 ----------------VAEIK----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQY 268 (567)
T ss_dssp ----------------EEEEE----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred ----------------eEEEe----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeE
Confidence 11111 11235789999 6999888776 46999
Q ss_pred EEEecCCCeEEEEeeccc----------ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 235 KIWRTSDFRCLESVKNAH----------DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
.++|..+.+.+..+.... ...+..+..++....+++....+|.|.++|....+. . .+..+ ...
T Consensus 269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----~-~v~~i-~~~ 341 (567)
T 1qks_A 269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----L-KTTEI-SAE 341 (567)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----E-EEEEE-ECC
T ss_pred EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----c-eeeee-ecc
Confidence 999999999888775221 125778888876666777788889999999865320 0 01111 123
Q ss_pred cceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEe-CCC
Q 041325 305 SAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGS-SDN 379 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~-~dg 379 (450)
.....+.|+|+|++++++. .++.|.++|+.+++.+.... ......|.+.-..+ ++++ ..+++. .++
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~--------vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~ 412 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED--------TGGQTPHPGRGANF-VHPTFGPVWATSHMGDD 412 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE--------CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSS
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe--------ccCcCCCCccceee-ECCCCCcEEEeCCCCCC
Confidence 4466789999999987765 57899999999987552110 00112343322222 3432 444443 568
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc-------CCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL-------DCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~-------Dg~i~iw~l 449 (450)
.|.++|..+.... ...++.+..+......-..+..+|+++ +|..... .++|.++|+
T Consensus 413 ~Vsvid~~~~~~~-~~~~kvv~~i~~~g~g~~~i~~~p~~~-------------~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 413 SVALIGTDPEGHP-DNAWKILDSFPALGGGSLFIKTHPNSQ-------------YLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EEEEEECCTTTCT-TTBTSEEEEEECSCSCCCCEECCTTCS-------------EEEEECTTCSSHHHHTCEEEEEG
T ss_pred eEEEecCCCCCCc-cccCEEEEEEecCCCCCEEEEeCCCCC-------------eEEEecCCCCCcccCceEEEEEC
Confidence 9999998863111 122567777765544434577889988 5665441 458888886
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-13 Score=132.61 Aligned_cols=281 Identities=8% Similarity=0.024 Sum_probs=167.2
Q ss_pred eEEEEEeCCEEEEeeCCC---cEEEe--cCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE-----EEeC
Q 041325 78 IPSLAIAGKLLYGGSSNG---EIRAW--NRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF-----SAHQ 145 (450)
Q Consensus 78 v~~~~~d~~~l~tgs~dg---~v~vw--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~-----s~~~ 145 (450)
+.....+|++++-...++ .-.+| +...++......... ...+|...+..++|+||+ |+ .|+.
T Consensus 72 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~------~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~ 145 (695)
T 2bkl_A 72 VSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG------WSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD 145 (695)
T ss_dssp ECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG------SSSSSCEEEEEEEECTTSSEEEEEEEETTCS
T ss_pred CCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH------hccCCCEEEEEEEECCCCCEEEEEECCCCCc
Confidence 333345888887666543 23444 443443222211100 012455678999999988 44 3344
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc--eEEEEEccCCC
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT--VSALALSSDGS 223 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~ 223 (450)
+..|++||+.+++... . .+... ...++|+|||+
T Consensus 146 ~~~i~v~dl~tg~~~~---------------~------------------------------~~~~~~~~~~~~wspDg~ 180 (695)
T 2bkl_A 146 EAVLHVIDVDSGEWSK---------------V------------------------------DVIEGGKYATPKWTPDSK 180 (695)
T ss_dssp CCEEEEEETTTCCBCS---------------S------------------------------CCBSCCTTCCCEECTTSS
T ss_pred eEEEEEEECCCCCCcC---------------C------------------------------cccCcccccceEEecCCC
Confidence 5789999999883210 0 01111 25789999999
Q ss_pred EEEEEeCCCc-------------EEEEecCCCeE--EEEee-cccccceEEEEEeecCCcEEEEEcCCC----cEEEEeC
Q 041325 224 LLYSTSWDRT-------------FKIWRTSDFRC--LESVK-NAHDDAINAIVVSKSNDGFVYTGSADT----KIKVWKK 283 (450)
Q Consensus 224 ~l~~~~~dg~-------------i~iwd~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~ 283 (450)
.|+.++.|.. |++|++.++.. ...+. ..+...+..+.|+|++. +|+.++.++ .|.+|+.
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECT
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcC
Confidence 9999988776 99999987752 12222 13445788999999765 454444444 6666654
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC-c
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH-T 359 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 359 (450)
.+++ ...+..+...+....+ ++|++++... .++.|.+||+.+++.- . ....+..+ .
T Consensus 260 ~~~~---------~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~--------~--~~~l~~~~~~ 319 (695)
T 2bkl_A 260 GEKD---------FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA--------S--WKEIVPEDSS 319 (695)
T ss_dssp TCSS---------CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG--------G--CEEEECCCSS
T ss_pred CCCc---------eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc--------C--CeEEecCCCC
Confidence 3322 2223334445555666 5666444433 2578999999765310 0 01112222 3
Q ss_pred cceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEEE-
Q 041325 360 KAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLVY- 436 (450)
Q Consensus 360 ~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~- 436 (450)
..+..+++.++ ++++...|+..++|.+... ......+..+ ...+..+.++++++ .++
T Consensus 320 ~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~~~~v~~~~~s~d~~-------------~l~~ 379 (695)
T 2bkl_A 320 ASLLSVSIVGGHLSLEYLKDATSEVRVATLK-------GKPVRTVQLPGVGAASNLMGLEDLD-------------DAYY 379 (695)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEEETT-------CCEEEECCCSSSSEECCCBSCTTCS-------------EEEE
T ss_pred CeEEEEEEECCEEEEEEEECCEEEEEEEeCC-------CCeeEEecCCCCeEEEEeecCCCCC-------------EEEE
Confidence 45677888755 7788888999888876521 1234445444 56777888888776 455
Q ss_pred ---EcccCCcEEEEEeC
Q 041325 437 ---SGSLDCEIKIWQIR 450 (450)
Q Consensus 437 ---s~~~Dg~i~iw~l~ 450 (450)
+....++|++||++
T Consensus 380 ~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 380 VFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEEETTEEEEEEEEETT
T ss_pred EEcCCCCCCEEEEEECC
Confidence 44456889999863
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-12 Score=113.06 Aligned_cols=229 Identities=11% Similarity=0.113 Sum_probs=152.4
Q ss_pred EecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
+..+.....+++|++++ ++++..++.|..|+..++ ..
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~--------------------------------------- 62 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS--------------------------------------- 62 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---------------------------------------
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---------------------------------------
Confidence 44556678899999764 777788999999998865 21
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec---ccccceEEEEEeecCCcEEEE----E
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---AHDDAINAIVVSKSNDGFVYT----G 272 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~----~ 272 (450)
.+..+...+.+++++++|+++++...++.|.+||..+++....... .....+..+++.|++ .++++ |
T Consensus 63 -----~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g 136 (296)
T 3e5z_A 63 -----PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYG 136 (296)
T ss_dssp -----EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHH
T ss_pred -----EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccc
Confidence 1112445688999999999887777778999999988775443321 112346789998744 35555 3
Q ss_pred c-------------CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC-CCce
Q 041325 273 S-------------ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD-QGNY 338 (450)
Q Consensus 273 ~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~-~~~~ 338 (450)
+ ..+.|..++.. ++ ...+..+......++|+|+++.+++.+.++.|++|++. +++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~---------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPD-GT---------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGET 206 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTT-SC---------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCE
T ss_pred cccccccccccccCCCcEEEEECCC-CC---------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcC
Confidence 2 13456666543 22 11222344567899999999998777788999999987 4432
Q ss_pred -eeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 339 -IVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
. ....+..+...+.+++++++ .|..+. ++.|.+||... +.+..+..+.. +++++|.
T Consensus 207 ~~-----------~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g---------~~~~~~~~~~~-~~~~~f~ 264 (296)
T 3e5z_A 207 EY-----------QGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG---------DELGRVLTPQT-TSNLCFG 264 (296)
T ss_dssp EE-----------EEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS---------CEEEEEECSSC-CCEEEEE
T ss_pred cC-----------CCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC---------CEEEEEECCCC-ceeEEEE
Confidence 1 00111223445567788743 344444 88999999863 45666766777 9999995
Q ss_pred -ecCCCCCCCCCCCCceEEEEEcccCC
Q 041325 417 -VDSDYSNRNSDHSSTSFLVYSGSLDC 442 (450)
Q Consensus 417 -~~~~~~~~~~~~~~~~~~l~s~~~Dg 442 (450)
++++ .|+.++.++
T Consensus 265 ~~d~~-------------~L~v~t~~~ 278 (296)
T 3e5z_A 265 GPEGR-------------TLYMTVSTE 278 (296)
T ss_dssp STTSC-------------EEEEEETTE
T ss_pred CCCCC-------------EEEEEcCCe
Confidence 7777 777777765
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-12 Score=127.56 Aligned_cols=242 Identities=11% Similarity=0.042 Sum_probs=152.6
Q ss_pred cCCCceEEEEEeCCe--EEEEeCC-C----eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQD-H----KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~d-g----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
+|...+..++|+||+ |+.+..+ | .|++||+.+++....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~----------------------------------- 166 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD----------------------------------- 166 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 344568899999987 5544433 3 899999998842110
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc----------------EEEEecCCCeEE--EEeec-ccccceEE
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT----------------FKIWRTSDFRCL--ESVKN-AHDDAINA 258 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~--~~~~~-~~~~~v~~ 258 (450)
.. .+ ..+..++|+|||+.|+.++.++. |++|++.+++.. ..+.. .+...+..
T Consensus 167 -------~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 167 -------VL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp -------EE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred -------cc-cC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 00 01 12567899999999999887766 999999876521 22221 23455788
Q ss_pred EEEeecCCcEEEEEcC----CCcEEEEeCcc------hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---
Q 041325 259 IVVSKSNDGFVYTGSA----DTKIKVWKKLR------AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--- 325 (450)
Q Consensus 259 ~~~~~~~~~~l~~~~~----dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--- 325 (450)
+.|+|++..++++... +..|.+||+.+ +.. ....+..+...+.. .|+|+|+.|+..+..
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-------~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-------KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------CCEEEECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-------ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence 9999966644443321 56899999865 320 12223334444444 488899888776653
Q ss_pred -CcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc--ceEEEEEe-CC-eEEEEeCCCe--EEEeeCCCCccccCCCce
Q 041325 326 -RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK--AILCLAVV-SN-LLFSGSSDNT--IRIWRRSSSVTDHQKGYS 398 (450)
Q Consensus 326 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~-~l~s~~~dg~--v~iwd~~~~~~~~~~~~~ 398 (450)
+.|.+||+.++..- ....+..|.. .+..+.|. ++ ++++...|+. |.+|++.++ +
T Consensus 310 ~~~l~~~d~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------~ 370 (710)
T 2xdw_A 310 NYRLINIDFTDPEES-----------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------A 370 (710)
T ss_dssp TCEEEEEETTSCCGG-----------GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------C
T ss_pred CCEEEEEeCCCCCcc-----------cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------C
Confidence 36999998865310 0012223322 57778887 44 7777888885 555666443 3
Q ss_pred eEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc---ccCCcEEEEEe
Q 041325 399 CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG---SLDCEIKIWQI 449 (450)
Q Consensus 399 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~---~~Dg~i~iw~l 449 (450)
.+..+..+...+..+.+++++.. ++++. ...+.|++||+
T Consensus 371 ~~~~l~~~~~~v~~~~~s~d~~~------------l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 371 LLKIFPLEVGSVVGYSGQKKDTE------------IFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEEECCCSSEEEEEECCTTCSE------------EEEEEECSSCCCEEEEEET
T ss_pred EEEecCCCCceEEEEecCCCCCE------------EEEEEeCCCCCCEEEEEEC
Confidence 45666667788899999988762 33332 24578998886
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-12 Score=111.45 Aligned_cols=235 Identities=11% Similarity=0.082 Sum_probs=155.7
Q ss_pred ceEEEEE--eCCEEE-EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEE
Q 041325 77 YIPSLAI--AGKLLY-GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVW 152 (450)
Q Consensus 77 ~v~~~~~--d~~~l~-tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw 152 (450)
...++++ +|++++ +.+.++.|.+|+..+...... ...+...+.++++.+++ ++.+..++.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEE
Confidence 6778888 577777 547789999999766543221 11233467889998765 6655558899999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
|........ +. ......+..++++++++++++...++
T Consensus 93 d~~~~~~~~-----------------~~--------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~ 129 (270)
T 1rwi_B 93 AAGSNNQTV-----------------LP--------------------------FDGLNYPEGLAVDTQGAVYVADRGNN 129 (270)
T ss_dssp CTTCSCCEE-----------------CC--------------------------CCSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred eCCCceEee-----------------ee--------------------------cCCcCCCcceEECCCCCEEEEECCCC
Confidence 987652110 00 01223578999999999877777788
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
.|.+|+..+........ .....+..+++.+++ .++++...++.|.+||...... ..........+..+++
T Consensus 130 ~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~p~~i~~ 199 (270)
T 1rwi_B 130 RVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQ--------VVLPFTDITAPWGIAV 199 (270)
T ss_dssp EEEEECTTCCSCEECCC-CSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCE--------EECCCSSCCSEEEEEE
T ss_pred EEEEEECCCceeEeecc-ccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCce--------EeecccCCCCceEEEE
Confidence 99999876554332222 233467889998744 3667777788999999865431 1111122256789999
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCC
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+++|+++++...++.|.+|+....... .....+...+.+++++ ++++++...++.|+++++...
T Consensus 200 d~~g~l~v~~~~~~~v~~~~~~~~~~~-------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 200 DEAGTVYVTEHNTNQVVKLLAGSTTST-------------VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CTTCCEEEEETTTSCEEEECTTCSCCE-------------ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCCEEEEECCCCcEEEEcCCCCcce-------------eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 999987777777889999998754322 1111223567888887 457788888999999998863
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.56 E-value=8.2e-11 Score=102.59 Aligned_cols=283 Identities=12% Similarity=0.087 Sum_probs=181.5
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEE
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFS 142 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s 142 (450)
+..+.+......+.++++ +|++.++...++.|.+||.. ++.... . ...+...+.++++.+++ ++.
T Consensus 10 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~----------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 10 LEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF-E----------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-E----------CSSTTCCEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE-E----------CCCCCCcceeEEECCCCCEEE
Confidence 444554456678899999 57877777778999999987 554332 1 11233578899998766 555
Q ss_pred Ee-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 143 AH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 143 ~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+. .++.|..||.. ++.... ..+ .....+.++++.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~~---------------~~~---------------------------~~~~~~~~i~~~~~ 114 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTEY---------------PLP---------------------------QPDSGPYGITEGLN 114 (300)
T ss_dssp EETTTTEEEEECTT-SCEEEE---------------ECS---------------------------STTCCEEEEEECST
T ss_pred EecCCCeEEEECCC-CCeEEe---------------cCC---------------------------CCCCCCccceECCC
Confidence 54 47889999877 421100 000 12246789999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
++++++...++.|..||.. ++............+..+++.+++. ++++...++.|..||. +++.. . ....
T Consensus 115 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~------~-~~~~ 184 (300)
T 2qc5_A 115 GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLE------E-YPLP 184 (300)
T ss_dssp TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE------E-EECS
T ss_pred CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEE------E-eeCC
Confidence 9988877768899999987 5544322212445788999987443 6666666788999997 33311 0 1111
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCC
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDN 379 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg 379 (450)
.....+..++++++|++.++....+.|.+||. +++... .....+...+.+++++++ +.++...++
T Consensus 185 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 185 TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE------------YDIPTPNARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE------------EECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE------------EECCCCCCCceEEEECCCCCEEEeccCCC
Confidence 23356889999999987777666788999998 444321 112233456788888743 555555578
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|..||.... .....+......+.++++.+++. ++++.. . .|..++.
T Consensus 252 ~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~~~~g~-------------l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 252 QIGRITNDNT--------IQEYQLQTENAEPHGITFGKDGS-------------VWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEECTTSC--------EEEEECCSTTCCCCCEEECTTSC-------------EEEECS-S-EEEEEEE
T ss_pred eEEEECCCCc--------EEEEECCccCCccceeEeCCCCC-------------EEEEcc-C-ceEEeCC
Confidence 9999997421 11122333445688899988887 666655 4 6766664
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-12 Score=112.21 Aligned_cols=233 Identities=8% Similarity=0.039 Sum_probs=153.7
Q ss_pred ceEEEEEeCCe-EEE-E-eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGDK-LFS-A-HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~~-l~s-~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
...++++.+++ ++. + ..++.|.+|+..+..... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-----------------~~------------------------- 62 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-----------------LP------------------------- 62 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-----------------CC-------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-----------------Ee-------------------------
Confidence 67888998766 554 5 677899999876542100 00
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
..+...+.+++++++++++++.. ++.|.+||...... ..+.......+..+++.+++ .++++...++.|.+|+..+
T Consensus 63 -~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 63 -FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp -CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTC
T ss_pred -eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCC
Confidence 01223567899999998666655 88999999876543 33321233578899998744 3666667788999997543
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.. ...........+..++++++|+++++...++.|.+||........ ....+...+.++
T Consensus 139 ~~--------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~p~~i 197 (270)
T 1rwi_B 139 KT--------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-------------LPFTDITAPWGI 197 (270)
T ss_dssp CS--------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-------------CCCSSCCSEEEE
T ss_pred ce--------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe-------------ecccCCCCceEE
Confidence 32 111111223457889999999977777778899999988654321 111222557788
Q ss_pred EEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 366 AVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 366 ~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
+++++ ++++...++.|.+|+.... ........+...+.++++.+++. ++++...++.
T Consensus 198 ~~d~~g~l~v~~~~~~~v~~~~~~~~--------~~~~~~~~~~~~p~~i~~~~~g~-------------l~v~~~~~~~ 256 (270)
T 1rwi_B 198 AVDEAGTVYVTEHNTNQVVKLLAGST--------TSTVLPFTGLNTPLAVAVDSDRT-------------VYVADRGNDR 256 (270)
T ss_dssp EECTTCCEEEEETTTSCEEEECTTCS--------CCEECCCCSCSCEEEEEECTTCC-------------EEEEEGGGTE
T ss_pred EECCCCCEEEEECCCCcEEEEcCCCC--------cceeeccCCCCCceeEEECCCCC-------------EEEEECCCCE
Confidence 88754 5555566889999998753 11112223345689999999988 8999999999
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
|+++++
T Consensus 257 v~~~~~ 262 (270)
T 1rwi_B 257 VVKLTS 262 (270)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-12 Score=111.33 Aligned_cols=211 Identities=11% Similarity=0.103 Sum_probs=140.4
Q ss_pred CCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC-CceE
Q 041325 137 GDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV-DTVS 214 (450)
Q Consensus 137 ~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 214 (450)
|+. |++++.|+.|.+||.++++. +..++ .+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~----------------~w~~~---------------------------~~~~~~~~ 40 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI----------------VWEYP---------------------------LEKGWECN 40 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE----------------EEEEE---------------------------CCTTCCCC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE----------------EEEeC---------------------------CCccCCCc
Confidence 455 88889999999999988843 22221 122 3578
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhcccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~ 293 (450)
++.+.|+|++++ +.++.|..||. +++.+..+.......+.++.+.+++. ++++.+. ++.|..+|. +++... .
T Consensus 41 ~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~--~ 113 (276)
T 3no2_A 41 SVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGEVLS--K 113 (276)
T ss_dssp EEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSCEEE--E
T ss_pred CeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCCEEE--E
Confidence 899999999888 45788999999 89999988843345788888887444 6666665 777777775 333110 0
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCe
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNL 371 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 371 (450)
.........+......+++.++|+++++...++.|..||.. ++.+..... . ....++... +++
T Consensus 114 ~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~-------------~-~~~~~~~~~~~g~~ 178 (276)
T 3no2_A 114 TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL-------------S-GTPFSSAFLDNGDC 178 (276)
T ss_dssp EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC-------------S-SCCCEEEECTTSCE
T ss_pred EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC-------------C-CCccceeEcCCCCE
Confidence 00000001122244566789999999999999999999998 887632211 1 122333443 568
Q ss_pred EEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC------CcceEEEEEEecCC
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH------RRPVKCLTAVVDSD 420 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~ 420 (450)
+++++.++.|..+|..++ +.+..+..+ ...+..++..+++.
T Consensus 179 ~v~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESN--------RIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEECBTTSEEEEECTTTC--------CEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEEeCCCCeEEEEeCcCC--------cEEEEecCCCCCCccccccccceEcCCCC
Confidence 888888889999998875 444444322 12367777777777
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-12 Score=112.72 Aligned_cols=243 Identities=12% Similarity=0.110 Sum_probs=158.0
Q ss_pred eeeeEEeecCCCcceEEEEE--eCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
..+..+. .+.....+++| +++ +++++..++.|..|+..++ ... +..+...+.++++++++
T Consensus 18 ~~~~~l~--~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~------------~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 18 AEARRLA--DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP------------EMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp CCCEEEE--CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE------------EESSCSSEEEEEECTTCC
T ss_pred CcEEEEe--cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE------------EECCCCCcceeeECCCCc
Confidence 3445566 67778889999 577 7888889999999998876 222 33566788999999877
Q ss_pred EEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
++.+. .++.|.+||..+++....... .. ......+..+++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~-------------~~--------------------------~~~~~~~~~i~~ 122 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADS-------------FE--------------------------GKKLNSPNDVCL 122 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECE-------------ET--------------------------TEECCCCCCEEE
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeec-------------cC--------------------------CCCCCCCCCEEE
Confidence 55444 468999999977632111000 00 001224678999
Q ss_pred ccCCCEEEE----Ee-------------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 219 SSDGSLLYS----TS-------------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 219 ~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
+|+|+++++ |+ ..+.|..++.. ++. ..+. .+......++|+|++. .+++.+.++.|.+|
T Consensus 123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~ 198 (296)
T 3e5z_A 123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-RDRVKPNGLAFLPSGN-LLVSDTGDNATHRY 198 (296)
T ss_dssp CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-CCCSSEEEEEECTTSC-EEEEETTTTEEEEE
T ss_pred CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-cCCCCCccEEECCCCC-EEEEeCCCCeEEEE
Confidence 999998887 32 13456666655 443 3333 4556778999998666 45888888999999
Q ss_pred eCc-chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 282 KKL-RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 282 d~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
++. .+... . ....+..+...+..++++++|+++++. ++.|.+||.. ++.+ ..+..+..
T Consensus 199 ~~~~~g~~~---~--~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~-------------~~~~~~~~ 257 (296)
T 3e5z_A 199 CLNARGETE---Y--QGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL-------------GRVLTPQT 257 (296)
T ss_dssp EECSSSCEE---E--EEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE-------------EEEECSSC
T ss_pred EECCCCcCc---C--CCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE-------------EEEECCCC
Confidence 986 22210 0 001112244566789999999866665 7889999986 5433 23344445
Q ss_pred ceEEEEEe-C--CeEEEEeCCCeEEEeeCCC
Q 041325 361 AILCLAVV-S--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 361 ~v~~~~~~-~--~~l~s~~~dg~v~iwd~~~ 388 (450)
+.+++|. + +.|++++.++ +.-++.++
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred -ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 7888885 3 3777777664 44455554
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=127.82 Aligned_cols=244 Identities=10% Similarity=0.033 Sum_probs=156.9
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCC-----cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNG-----EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
+|...+..++| ||++||.++.++ .|++||+.+++.... .. .+ ..+..++|+||+ |+.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-----------~~-~~-~~~~~~~wspDg~~l~~~ 188 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------VL-ER-VKFSCMAWTHDGKGMFYN 188 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------EE-EE-ECSCCEEECTTSSEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------cc-cC-cccceEEEEeCCCEEEEE
Confidence 45556888888 899998776543 899999999886543 01 11 136789999886 7777
Q ss_pred eCCCe----------------EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 144 HQDHK----------------IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 144 ~~dg~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
+.++. |++|++.++.... ..+. ...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------~~v~---------------------------~~~ 229 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED------------ILCA---------------------------EFP 229 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC------------EEEE---------------------------CCT
T ss_pred EECCccccccccccccCCCCEEEEEECCCCcccc------------eEEe---------------------------ccC
Confidence 77665 8999987763100 0000 001
Q ss_pred cCCCceEEEEEccCCCEEEEEeC-----CCcEEEEecCC------Ce-EEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 208 HHVDTVSALALSSDGSLLYSTSW-----DRTFKIWRTSD------FR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
.|...+..+.|+|||++|+.++. +..|.+||+.+ +. ....+. .+...+.. .|+++++.+++.+..+
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRH 307 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCEE-EEEEETTEEEEEECTT
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee-CCCCcEEE-EEeccCCEEEEEECCC
Confidence 24456788999999999888764 56899999976 43 344444 34444444 4777666555555443
Q ss_pred ---CcEEEEeCcchhhhccccchhhhhHhhccc--ceEEEEEcCCCCEEEEeeCCCc--EEEEEcCCCceeeeCCCCCCc
Q 041325 276 ---TKIKVWKKLRAALQVNKKHSLVQTLEKHKS--AVTALALSTDGTVLYSGACDRS--ILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 276 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~--i~vwd~~~~~~~~~~~~~~~~ 348 (450)
+.|.+||+.++... ....+..+.. .+..++|++++.++++...|+. |.+|++.+++.+
T Consensus 308 ~~~~~l~~~d~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~--------- 372 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEES------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL--------- 372 (710)
T ss_dssp CTTCEEEEEETTSCCGG------GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE---------
T ss_pred CCCCEEEEEeCCCCCcc------cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE---------
Confidence 36999998664310 1122223333 6788999887888888888885 566777566533
Q ss_pred eeeeccccCCccceEEEEEeC--CeEE-EEe---CCCeEEEeeCCCC
Q 041325 349 MVLKGALRGHTKAILCLAVVS--NLLF-SGS---SDNTIRIWRRSSS 389 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~--~~l~-s~~---~dg~v~iwd~~~~ 389 (450)
..+..+...+..+++++ +.++ +.+ ..+.|+.||+.++
T Consensus 373 ----~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 373 ----KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp ----EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred ----EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 23444566777888764 3333 322 3478999999875
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-13 Score=131.44 Aligned_cols=242 Identities=11% Similarity=0.071 Sum_probs=152.2
Q ss_pred CCCcceEEEEE--eCCEEE-----EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLY-----GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~-----tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
+|...+..++| ||++|| .|+.+..|++||+.+++.... .. +.. .....++|++|+ |+.+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~--------~~~--~~~~~~~wspDg~~l~~~ 185 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DV--------IEG--GKYATPKWTPDSKGFYYE 185 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CC--------BSC--CTTCCCEECTTSSEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cc--------cCc--ccccceEEecCCCEEEEE
Confidence 46667888999 899999 566667899999999885411 00 011 112678999886 8888
Q ss_pred eCCCe-------------EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 144 HQDHK-------------IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 144 ~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
+.|.. |++|++.++.... ..+. ....|.
T Consensus 186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------~lv~---------------------------~~~~~~ 226 (695)
T 2bkl_A 186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------TVVH---------------------------ERTGDP 226 (695)
T ss_dssp ECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------EEEE---------------------------CCCCCT
T ss_pred EecCCCCCccccCCCCCEEEEEECCCCchhc------------eEEE---------------------------ecCCCC
Confidence 87766 9999998773100 0000 011245
Q ss_pred CceEEEEEccCCCEEEEEeCCC----cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc---CCCcEEEEeC
Q 041325 211 DTVSALALSSDGSLLYSTSWDR----TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS---ADTKIKVWKK 283 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~ 283 (450)
..+..+.|+|+|++|+.++.++ .|.+||..+++.. .+. .+...+....+ ++++ +++.+. .++.|.+||+
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~-~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV-KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE-ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBT
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee-cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeC
Confidence 5788999999999998887666 6777777655433 333 34445555556 4344 555554 3588999998
Q ss_pred cchhhhccccchhhhhHhhc--ccceEEEEEcCCCCEEEEeeCCCcEEEEEcC-CCceeeeCCCCCCceeeeccccCC-c
Q 041325 284 LRAALQVNKKHSLVQTLEKH--KSAVTALALSTDGTVLYSGACDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGH-T 359 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 359 (450)
.+++.. ....+..+ ...+..++++ ++.++++...|+..++|.+. +++.. ..+..+ .
T Consensus 303 ~~~~~~------~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~-------------~~l~~~~~ 362 (695)
T 2bkl_A 303 AKPARA------SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV-------------RTVQLPGV 362 (695)
T ss_dssp TBCSGG------GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE-------------EECCCSSS
T ss_pred CCCCcc------CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee-------------EEecCCCC
Confidence 665310 01122222 3457888888 77888889999988888665 23322 222223 4
Q ss_pred cceEEEEEeC--CeEE-EE---eCCCeEEEeeCCCC
Q 041325 360 KAILCLAVVS--NLLF-SG---SSDNTIRIWRRSSS 389 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~-s~---~~dg~v~iwd~~~~ 389 (450)
..+..+++++ +.++ +. ...++|++||+.++
T Consensus 363 ~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 363 GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp SEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 5566666653 3444 22 23478999998865
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-12 Score=111.36 Aligned_cols=236 Identities=9% Similarity=0.005 Sum_probs=151.9
Q ss_pred cceEEEEEeCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-eEEEEe-CCCeEEEE
Q 041325 76 SYIPSLAIAGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-KLFSAH-QDHKIRVW 152 (450)
Q Consensus 76 ~~v~~~~~d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~-~dg~i~iw 152 (450)
.....+.+++. ++++...++.|.+||..+++.+... ........++++++ .++.+. .++.|.+|
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i-------------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~i 110 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRI-------------TGFTSPRYIHFLSDEKAYVTQIWDYRIFII 110 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEE-------------ECCSSEEEEEEEETTEEEEEEBSCSEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEc-------------CCCCCCcEEEEeCCCeEEEEECCCCeEEEE
Confidence 45677888554 4455556799999999998876652 22357788999644 466665 78999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WD 231 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 231 (450)
|..+.+... .++.... .+.......+++ .++.++++.. .+
T Consensus 111 D~~t~~~~~----------------~i~~g~~----------------------~~~~~~p~~i~~-~~~~lyv~~~~~~ 151 (328)
T 3dsm_A 111 NPKTYEITG----------------YIECPDM----------------------DMESGSTEQMVQ-YGKYVYVNCWSYQ 151 (328)
T ss_dssp ETTTTEEEE----------------EEECTTC----------------------CTTTCBCCCEEE-ETTEEEEEECTTC
T ss_pred ECCCCeEEE----------------EEEcCCc----------------------cccCCCcceEEE-ECCEEEEEcCCCC
Confidence 999874321 1110000 001113445666 3444444433 48
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC----------CcEEEEeCcchhhhccccchhhhhHh
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----------TKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+.|.++|+.+++.+..+.. ......+.+.++ ..+++++..+ +.|.++|..+++ ....+.
T Consensus 152 ~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--------v~~~~~ 220 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTI--GIQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--------VEKQFK 220 (328)
T ss_dssp CEEEEEETTTTEEEEEEEC--SSCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--------EEEEEE
T ss_pred CEEEEEECCCCeEEEEEEc--CCCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCe--------EEEEEe
Confidence 8999999999998888762 344577888864 3355555444 789999987665 222222
Q ss_pred hc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--C-eEEEE--
Q 041325 302 KH-KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--N-LLFSG-- 375 (450)
Q Consensus 302 ~~-~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~-- 375 (450)
.. ......++++|++++|+++.. .|.+||..+++... .............+++++ . +.++.
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-----------~~~~~~~~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-----------RPFLEFRDTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-----------SCSBCCCSSCEEEEEECTTTCCEEEEECT
T ss_pred cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-----------eeeecCCCCceEEEEEcCCCCeEEEEccc
Confidence 11 236789999999999988765 89999998776320 011111235577888874 2 55555
Q ss_pred --eCCCeEEEeeCC
Q 041325 376 --SSDNTIRIWRRS 387 (450)
Q Consensus 376 --~~dg~v~iwd~~ 387 (450)
..++.|.+||..
T Consensus 288 ~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 288 DYQQQGIVYRYSPQ 301 (328)
T ss_dssp TSSSEEEEEEECTT
T ss_pred ccccCCEEEEECCC
Confidence 578999999987
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-11 Score=107.15 Aligned_cols=250 Identities=13% Similarity=0.117 Sum_probs=160.2
Q ss_pred CCCcceEEEEE--eCCEEEE-------eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-e-EE
Q 041325 73 GNSSYIPSLAI--AGKLLYG-------GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-K-LF 141 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~t-------gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-l~ 141 (450)
+.-....+++| +++++++ +..++.|.+||..+++....... ...++...+.++++.++ + ++
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~~~~~~~~i~~~~~~g~l~ 86 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP--------EVNGYGGIPAGCQCDRDANQLF 86 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC--------EETTEECCEEEEEECSSSSEEE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec--------ccCCCCCCCceEEEecCCCcEE
Confidence 45556788889 5777877 67789999999888775433110 01124467899999987 4 67
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
.++.++.|.+||.+ ++..... ..... ......+.+++++++
T Consensus 87 v~~~~~~l~~~d~~-g~~~~~~---------------~~~~~-----------------------~~~~~~~~~i~~d~~ 127 (314)
T 1pjx_A 87 VADMRLGLLVVQTD-GTFEEIA---------------KKDSE-----------------------GRRMQGCNDCAFDYE 127 (314)
T ss_dssp EEETTTEEEEEETT-SCEEECC---------------SBCTT-----------------------SCBCBCCCEEEECTT
T ss_pred EEECCCCEEEEeCC-CCEEEEE---------------eccCC-----------------------CccccCCcCEEECCC
Confidence 77666689999987 5321100 00000 012235788999999
Q ss_pred CCEEEEEeCC---------------CcEEEEecCCCeEEEEeecccccceEEEEEe----ecCCcEEEEEcCCCcEEEEe
Q 041325 222 GSLLYSTSWD---------------RTFKIWRTSDFRCLESVKNAHDDAINAIVVS----KSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 222 ~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~vwd 282 (450)
|+++++...+ +.|..||.. ++...... +......++++ ++++.++++...++.|.+||
T Consensus 128 g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~ 204 (314)
T 1pjx_A 128 GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD 204 (314)
T ss_dssp SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEE
Confidence 9887776654 567777766 55433322 34456888898 75444556667789999999
Q ss_pred Ccc-hhhhccccchhhhhHhhcc-cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 283 KLR-AALQVNKKHSLVQTLEKHK-SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
... +... .......+..+. ..+..++++++|+++++...++.|.+||..+++.+ ..+..+..
T Consensus 205 ~~~~g~~~---~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-------------~~~~~~~~ 268 (314)
T 1pjx_A 205 IKGPAKIE---NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-------------MRIRCPFE 268 (314)
T ss_dssp EEETTEEE---EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-------------EEEECSSS
T ss_pred CCCCCccc---cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-------------EEEeCCCC
Confidence 752 2210 000111222232 55788999999998888878899999998865533 12233446
Q ss_pred ceEEEEEeC--CeE-EEEeCCCeEEEeeCCC
Q 041325 361 AILCLAVVS--NLL-FSGSSDNTIRIWRRSS 388 (450)
Q Consensus 361 ~v~~~~~~~--~~l-~s~~~dg~v~iwd~~~ 388 (450)
.+.++++++ +.| ++...++.|..|++..
T Consensus 269 ~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 269 KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 788899864 434 4555668899999874
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=123.26 Aligned_cols=188 Identities=6% Similarity=-0.084 Sum_probs=117.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEE-------------------EEEeecCCcEEEEE---
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINA-------------------IVVSKSNDGFVYTG--- 272 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~--- 272 (450)
.+.|+|+|+.|+.++.++.|.+||+.+++...... .+...... +.++|+++.+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 36799999999999999999999999887655444 22221111 22344333222211
Q ss_pred -cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCC------CcEEEEEcCCCceeeeCCC
Q 041325 273 -SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACD------RSILVWERDQGNYIVDGDD 344 (450)
Q Consensus 273 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~ 344 (450)
..+..|.+||+.+++. . .+..+...+..+.|+| +++.|+..+.+ ..|.+||+..++..
T Consensus 164 ~~~~~~l~~~d~~~g~~--------~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----- 229 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGEL--------E-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR----- 229 (396)
T ss_dssp TCCCEEEEEEETTTCCE--------E-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-----
T ss_pred CCCcceEEEEECCCCcE--------E-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-----
Confidence 4567899999876541 1 1123566788999999 78877766543 46888888755321
Q ss_pred CCCceeeeccccCC-ccceEEEEEeC--CeEEEEeCC-----CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 345 DSGHMVLKGALRGH-TKAILCLAVVS--NLLFSGSSD-----NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 345 ~~~~~~~~~~~~~~-~~~v~~~~~~~--~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
...... ...+..+.|++ ++|+.++.+ +.|++||+.++. ...+..+.+ .. +.|+
T Consensus 230 --------~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~------~~~l~~~~~----~~-~~~s 290 (396)
T 3c5m_A 230 --------KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE------NEEVMVMPP----CS-HLMS 290 (396)
T ss_dssp --------ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC------EEEEEECCS----EE-EEEE
T ss_pred --------EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC------eEEeeeCCC----CC-CCcc
Confidence 111111 23567788874 466666543 459999998641 122222222 22 8899
Q ss_pred e-cCCCCCCCCCCCCceEEEEEcc----------------cCCcEEEEEe
Q 041325 417 V-DSDYSNRNSDHSSTSFLVYSGS----------------LDCEIKIWQI 449 (450)
Q Consensus 417 ~-~~~~~~~~~~~~~~~~~l~s~~----------------~Dg~i~iw~l 449 (450)
| +++ ++++++ .++.|++||+
T Consensus 291 ~~dg~-------------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 291 NFDGS-------------LMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp CSSSS-------------EEEEEECCC----------CCCCCCEEEEEET
T ss_pred CCCCc-------------eEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 9 988 777654 3478999986
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.3e-12 Score=107.04 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=137.2
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC-CceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG-DAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+++|++++.|+.|.+||.++++.+.. +..+. ..+.++.+.+++ ++. +.++.|..||. +++..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~------------~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~-- 68 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWE------------YPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGREL-- 68 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEE------------EECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEE--
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEE------------eCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEE--
Confidence 68899999999999999999998776 33333 467888898877 444 55788999998 55321
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC-CCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW-DRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 241 (450)
..+.. +....+.++.+.++|+++++.+. ++.|..+|. +
T Consensus 69 --------------W~~~~--------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~ 107 (276)
T 3no2_A 69 --------------WNIAA--------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-K 107 (276)
T ss_dssp --------------EEEEC--------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-T
T ss_pred --------------EEEcC--------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-C
Confidence 11110 11235778899999999999887 788888886 6
Q ss_pred CeEEEEeecc-----cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 242 FRCLESVKNA-----HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 242 ~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
++.+..+... +......+...+ +.+++++...++.|..||.. ++ .+..+... ..+.++...++|
T Consensus 108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~--------~~w~~~~~-~~~~~~~~~~~g 176 (276)
T 3no2_A 108 GEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQ--------LLNSVKLS-GTPFSSAFLDNG 176 (276)
T ss_dssp SCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SC--------EEEEEECS-SCCCEEEECTTS
T ss_pred CCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CC--------EEEEEECC-CCccceeEcCCC
Confidence 7777666421 112344556666 44588899999999999986 55 33333322 345678888999
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeee
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
++++++..++.|..+|..+++.+.+
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCEEEE
T ss_pred CEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 9999999888999999999987753
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-11 Score=110.85 Aligned_cols=219 Identities=12% Similarity=0.119 Sum_probs=135.5
Q ss_pred cceEEEEE--eCCEEEEeeCC---C--cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 76 SYIPSLAI--AGKLLYGGSSN---G--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~d---g--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
..+.+++| ||++|+.++.+ + .|.+|++.+++.... . .+.. +..++|+|++ |+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l------------~-~~~~-~~~~~wspdg~~l~~~~~~ 124 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI------------L-EAKN-IRSLEWNEDSRKLLIVGFK 124 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE------------E-EESE-EEEEEECTTSSEEEEEEEC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE------------E-cCCC-ccceeECCCCCEEEEEEcc
Confidence 35677888 79999987754 3 478888887764443 2 2223 8999999876 6666532
Q ss_pred ---------------------------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 147 ---------------------------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 147 ---------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
..|.+||+.+++. +
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~----------------~----------------------- 165 (347)
T 2gop_A 125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV----------------I----------------------- 165 (347)
T ss_dssp CCC---------CCCC---------CEEEEEEEETTTTEE----------------E-----------------------
T ss_pred CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE----------------E-----------------------
Confidence 3566666665521 0
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCC-------cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR-------TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
..+.. . .+..++|+|+| +++++..++ ...||.+.+++. ..+. .+ ..+..+ +|++. .|+.+
T Consensus 166 ----~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~-~~-~~~~~~--spdg~-~l~~~ 232 (347)
T 2gop_A 166 ----EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMF-EK-VSFYAV--DSDGE-RILLY 232 (347)
T ss_dssp ----EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEE-EE-ESEEEE--EECSS-CEEEE
T ss_pred ----eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEec-cC-cceeeE--CCCCC-EEEEE
Confidence 01111 1 56788999999 777776542 344554445554 3333 23 444444 77555 44444
Q ss_pred cCC--------CcEEEEeCcchhhhccccchhhhhHhhcccceEE-EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 273 SAD--------TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA-LALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 273 ~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
+.+ ..|.+|| +++ .......+...+.. +.|+ ++ ++++++.++.+++| +.+++..
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~--------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~---- 295 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKE--------VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK---- 295 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSC--------EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE----
T ss_pred EccccCCccccceEEEEC--CCc--------eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE----
Confidence 432 4677887 332 12222345567776 8999 88 89999999999999 8754321
Q ss_pred CCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeE-EEeeCC
Q 041325 344 DDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTI-RIWRRS 387 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v-~iwd~~ 387 (450)
.+..+...|.+++|++.++++++.++.. .+|.+.
T Consensus 296 ----------~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 296 ----------PIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ----------EEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred ----------EEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 2223467788898888666677777654 677654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.4e-10 Score=99.62 Aligned_cols=282 Identities=9% Similarity=-0.014 Sum_probs=163.3
Q ss_pred eCCEEEEeeC--CC---cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CC
Q 041325 84 AGKLLYGGSS--NG---EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QD 146 (450)
Q Consensus 84 d~~~l~tgs~--dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~d 146 (450)
++++++.... .+ .|.++|..+++.+.. +.....+ .++++||+ ++.+. .+
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~------------i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGH------------VNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEE------------ecCCCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 4555554432 22 789999998886544 1111223 88999887 66554 36
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.|.+||..+.+. +..++.... ... .+......++++|+|++|+
T Consensus 97 ~~v~viD~~t~~~----------------~~~i~~~~~-------------------~~~-~~g~~p~~~~~spDG~~l~ 140 (373)
T 2mad_H 97 DYVEVFDPVTFLP----------------IADIELPDA-------------------PRF-DVGPYSWMNANTPNNADLL 140 (373)
T ss_pred CeEEEEECCCCcE----------------EEEEECCCc-------------------ccc-ccCCCccceEECCCCCEEE
Confidence 7899999987633 222211100 000 0112345789999999999
Q ss_pred EEeC--CCcEEEEecCCCeEEEE-eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 227 STSW--DRTFKIWRTSDFRCLES-VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 227 ~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
++.. ++.|.++| .+++.+.. +. ... ++.+.|.....+++.+.||.+.++|. +++...... ....+.+.
T Consensus 141 v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~--~~~~~~~~ 211 (373)
T 2mad_H 141 FFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL--VGAMLTAA 211 (373)
T ss_pred EEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe--ccccccCC
Confidence 8874 57899999 99988877 64 222 24455656667778889999999998 654110000 00001111
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec----cccCCccceEEEEEe--CCeEEEEeC
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG----ALRGHTKAILCLAVV--SNLLFSGSS 377 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~ 377 (450)
........+.+++..++..+.++.+.+.|+......... ...... ...........+.++ ++.++.+..
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~-----~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~ 286 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA-----PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS 286 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee-----eeeecCCcccccceecCceEeEEECCCCCEEEEEec
Confidence 111223456666655555557889999999754321100 000000 000011222234444 445555432
Q ss_pred ----------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEE
Q 041325 378 ----------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKI 446 (450)
Q Consensus 378 ----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~i 446 (450)
++.|.++|..+. +.+..+.. .....+++|+||++. +++++. .++.|.+
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~--------~vv~~i~~-g~~p~~i~~s~Dg~~------------~l~v~~~~~~~V~V 345 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVG--------QTSSQISL-GHDVDAISVAQDGGP------------DLYALSAGTEVLHI 345 (373)
T ss_pred cCCcccccCCCCeEEEEECCCC--------EEEEEEEC-CCCcCeEEECCCCCe------------EEEEEcCCCCeEEE
Confidence 357999999874 55566642 335889999999873 455555 5899999
Q ss_pred EEeC
Q 041325 447 WQIR 450 (450)
Q Consensus 447 w~l~ 450 (450)
||++
T Consensus 346 iD~~ 349 (373)
T 2mad_H 346 YDAG 349 (373)
T ss_pred EECC
Confidence 9974
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-10 Score=102.93 Aligned_cols=291 Identities=10% Similarity=0.085 Sum_probs=174.9
Q ss_pred CCCCccceeeeEEeecCC-------Ccce-EEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 57 APAASEHQCSATLKVKGN-------SSYI-PSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h-------~~~v-~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
.....+++.+-.+..... ...+ ..+..++..++.++.+|.|..+|..+++......... .
T Consensus 67 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------~ 134 (376)
T 3q7m_A 67 ALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG------------E 134 (376)
T ss_dssp EEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS------------C
T ss_pred EEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC------------c
Confidence 344456666666653221 2223 3445578889999999999999999998776533221 1
Q ss_pred ceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 129 AVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 129 ~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
........++.++.++.++.|..+|..+++......... . ......
T Consensus 135 ~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~----------------~------------------~~~~~~ 180 (376)
T 3q7m_A 135 ALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDM----------------P------------------SLSLRG 180 (376)
T ss_dssp CCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---------------------------------------CC
T ss_pred eEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC----------------C------------------ceeecC
Confidence 111223446678889999999999998885432211110 0 000000
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc---------e-EEEEEeecCCcEEEEEcCCCcE
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA---------I-NAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~l~~~~~dg~i 278 (450)
...++ .. +..++.+..++.|..+|..+++.+.......... + ..... .++.++.++.++.+
T Consensus 181 ~~~~~----~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l 251 (376)
T 3q7m_A 181 ESAPT----TA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNL 251 (376)
T ss_dssp CCCCE----EE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCE
T ss_pred CCCcE----EE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEE
Confidence 11111 11 3467778889999999999998887765221100 1 11112 23578888889999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
..+|..+++. +.... ......+.. ++..++.++.++.|..+|..+++.+..... ..
T Consensus 252 ~~~d~~tG~~--------~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~------------~~ 307 (376)
T 3q7m_A 252 TALDLRSGQI--------MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD------------LL 307 (376)
T ss_dssp EEEETTTCCE--------EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT------------TT
T ss_pred EEEECCCCcE--------Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc------------cC
Confidence 9999987762 11111 122334444 466788888999999999999986632210 11
Q ss_pred ccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 359 TKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 359 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
...+......++.|+.++.+|.|.++|..++ +.+.........+.......+ . .|+.+
T Consensus 308 ~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG--------~~~~~~~~~~~~~~~~~~~~~-~-------------~l~v~ 365 (376)
T 3q7m_A 308 HRLLTSPVLYNGNLVVGDSEGYLHWINVEDG--------RFVAQQKVDSSGFQTEPVAAD-G-------------KLLIQ 365 (376)
T ss_dssp TSCCCCCEEETTEEEEECTTSEEEEEETTTC--------CEEEEEECCTTCBCSCCEEET-T-------------EEEEE
T ss_pred CCcccCCEEECCEEEEEeCCCeEEEEECCCC--------cEEEEEecCCCcceeCCEEEC-C-------------EEEEE
Confidence 1222334446788999999999999999876 344444332233322111223 3 58888
Q ss_pred ccCCcEEEEE
Q 041325 439 SLDCEIKIWQ 448 (450)
Q Consensus 439 ~~Dg~i~iw~ 448 (450)
+.||.|+.|+
T Consensus 366 ~~~G~l~~~~ 375 (376)
T 3q7m_A 366 AKDGTVYSIT 375 (376)
T ss_dssp BTTSCEEEEE
T ss_pred eCCCEEEEEe
Confidence 8999999987
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-10 Score=96.32 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=156.2
Q ss_pred cCCCceEEEEEeCCe-EEEEeC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK-LFSAHQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~-l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
.+...+.++++.+++ ++.+.. ++.|.+||.. +...... .+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~---------------~~---------------------- 53 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP---------------LP---------------------- 53 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE---------------CS----------------------
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec---------------CC----------------------
Confidence 444688999999776 555554 7899999987 4221100 00
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
.+...+.++++++++.++++...++.|..||.. ++. ..+.. .....+..+++.++ +.++++...++.|..|
T Consensus 54 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~ 125 (299)
T 2z2n_A 54 -----TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRI 125 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred -----cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEE
Confidence 123468899999999988877778899999986 332 22221 24457888999863 3466666678899999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|. +++.. ..........+..+++.++|+++++...++.|..||. +++... .........
T Consensus 126 d~-~g~~~-------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~------------~~~~~~~~~ 184 (299)
T 2z2n_A 126 TD-DGKIR-------EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE------------FKIPTPASG 184 (299)
T ss_dssp CT-TCCEE-------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE------------EECSSTTCC
T ss_pred CC-CCCEE-------EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE------------eeCCCCCCc
Confidence 97 33311 0011123456889999999988887777889999998 655331 112223345
Q ss_pred eEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc
Q 041325 362 ILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 362 v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~ 439 (450)
+.++++++ ++.++...++.|.+||. ++. ........+...+.++++.+++. ++++..
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-------~~~~~~~~~~~~~~~i~~~~~g~-------------l~v~~~ 243 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRITT-SGE-------ITEFKIPTPNARPHAITAGAGID-------------LWFTEW 243 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCC-------EEEEECSSTTCCEEEEEECSTTC-------------EEEEET
T ss_pred ceeEEECCCCCEEEEccCCceEEEECC-CCc-------EEEEECCCCCCCceeEEECCCCC-------------EEEecc
Confidence 67888874 45555556789999998 431 11122334556788999999988 677666
Q ss_pred cCCcEEEEEe
Q 041325 440 LDCEIKIWQI 449 (450)
Q Consensus 440 ~Dg~i~iw~l 449 (450)
.++.|..||.
T Consensus 244 ~~~~i~~~d~ 253 (299)
T 2z2n_A 244 GANKIGRLTS 253 (299)
T ss_dssp TTTEEEEEET
T ss_pred CCceEEEECC
Confidence 6788888874
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-11 Score=119.53 Aligned_cols=281 Identities=12% Similarity=0.058 Sum_probs=163.0
Q ss_pred eEEEEEeCCEEEEeeCCCc---EEEecC--C---CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC-
Q 041325 78 IPSLAIAGKLLYGGSSNGE---IRAWNR--D---PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD- 146 (450)
Q Consensus 78 v~~~~~d~~~l~tgs~dg~---v~vw~~--~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d- 146 (450)
+.....||++++....++. -.+|.. . .++......... ...+|...+..++|+||+ |+.+..+
T Consensus 111 ~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~------l~~~~~~~~~~~~~SPDG~~la~~~~~~ 184 (741)
T 1yr2_A 111 FGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNT------WAKDGATALDAWAASDDGRLLAYSVQDG 184 (741)
T ss_dssp ECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGG------CC----EEEEEEEECTTSSEEEEEEEET
T ss_pred cCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHH------hccCCCEEEEeEEECCCCCEEEEEEcCC
Confidence 3344468988886655433 455543 2 232222111000 012344478899999887 5544332
Q ss_pred ----CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 147 ----HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 147 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
..|++||+.+++.... . .+...+..++|+||
T Consensus 185 G~e~~~i~v~dl~tg~~~~~---------------~-----------------------------~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 185 GSDWRTVKFVGVADGKPLAD---------------E-----------------------------LKWVKFSGLAWLGN- 219 (741)
T ss_dssp TCSEEEEEEEETTTCCEEEE---------------E-----------------------------EEEEESCCCEESTT-
T ss_pred CCceEEEEEEECCCCCCCCc---------------c-----------------------------CCCceeccEEEECC-
Confidence 3699999998842110 0 00011346889999
Q ss_pred CEEEEEeCCCc--------------EEEEecCCCeE--EEEeec-ccccceEEEEEeecCCcEEEEEcC-----CCcEEE
Q 041325 223 SLLYSTSWDRT--------------FKIWRTSDFRC--LESVKN-AHDDAINAIVVSKSNDGFVYTGSA-----DTKIKV 280 (450)
Q Consensus 223 ~~l~~~~~dg~--------------i~iwd~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~v 280 (450)
+.|+.+..++. |.+|++.++.. ...+.. .+...+..+.|+|++. +|+..+. ...|++
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~ 298 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHV 298 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEE
Confidence 88888876554 88999977652 222221 2233578999998665 4444443 348999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCCc-eeeeCCCCCCceeeeccc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQGN-YIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~ 355 (450)
||+.++.. . ....+..+...+... ++|+|+.|+..+.+ +.|.+||+.++. . ....+
T Consensus 299 ~d~~~~~~----~--~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~~l~ 359 (741)
T 1yr2_A 299 ARVTNGKI----G--PVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR------------FDTVV 359 (741)
T ss_dssp EEEETTEE----C--CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCE------------EEEEE
T ss_pred EECCCCCC----c--ccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccc------------cEEEe
Confidence 99865420 0 012222233334444 34889988887753 459999987641 1 11222
Q ss_pred cCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceE
Q 041325 356 RGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
..+...+..+++.++ ++++...|+..+||.+... ......+.. +...+..+.++++++
T Consensus 360 ~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~~~~v~~~~~s~d~~------------- 419 (741)
T 1yr2_A 360 PESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD-------GKPAGAVSLPGIGSASGLSGRPGDR------------- 419 (741)
T ss_dssp CCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT-------SCEEEECBCSSSCEEEEEECCBTCS-------------
T ss_pred cCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC-------CCceeeccCCCCeEEEEeecCCCCC-------------
Confidence 334445667777755 7788888998888765421 123444543 366788999999877
Q ss_pred EEE----EcccCCcEEEEEe
Q 041325 434 LVY----SGSLDCEIKIWQI 449 (450)
Q Consensus 434 ~l~----s~~~Dg~i~iw~l 449 (450)
.|+ +....++|++||+
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp CEEEEEEETTEEEEEEEEET
T ss_pred EEEEEEcCCCCCCEEEEEEC
Confidence 344 3445688999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.2e-10 Score=104.92 Aligned_cols=322 Identities=11% Similarity=0.042 Sum_probs=184.8
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCC--CCCceeeeecCCCCcceeEEecCCCce
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRD--PNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
.......+++.+.++. ....+..+.+ ||+++++++.||.|.+||+. +.+.+.. +.. ....
T Consensus 179 V~viD~~t~~v~~~i~---~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~------------i~~-G~~P 242 (567)
T 1qks_A 179 IALIDGSTYEIKTVLD---TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE------------IKI-GSEA 242 (567)
T ss_dssp EEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE------------EEC-CSEE
T ss_pred EEEEECCCCeEEEEEe---CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE------------Eec-CCCC
Confidence 3344556677777776 2334567788 89999999999999999995 5554443 112 2346
Q ss_pred EEEEEe----CCe--EEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 131 KSLVVL----GDK--LFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 131 ~~l~~~----~~~--l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
..++|+ |++ +++ ...+++|.++|..+.+.. ..++.... ..
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~----------------~~i~~~~~-----------------~~ 289 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK----------------KIQSTRGM-----------------TY 289 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE----------------EEEECCEE-----------------CT
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE----------------EEEecccc-----------------cc
Confidence 789999 465 444 455799999998887432 22211000 00
Q ss_pred eeeecCCC-ceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 204 CTWVHHVD-TVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 204 ~~~~~~~~-~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
.....|.. .+..+..++++.. ++....+|.|.++|....+.+.............+.|+|++..++++...++.|.++
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 00001222 5777888887555 444456799999999876433322222445677889999777566777788999999
Q ss_pred eCcchhhhccccchhh-hhHhhcccceEEEEEcCCCCEE-EEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLV-QTLEKHKSAVTALALSTDGTVL-YSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~l-~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+.+++.... . .+ . ...|.+.-..+ ++|++..+ +++. .++.|.++|..+.+.. ...+.....+...
T Consensus 370 D~~t~kl~~~--i-~vgg-~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~------~~~~kvv~~i~~~ 438 (567)
T 1qks_A 370 DTKEGKLVAI--E-DTGG-QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP------DNAWKILDSFPAL 438 (567)
T ss_dssp ETTTTEEEEE--E-ECSS-SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT------TTBTSEEEEEECS
T ss_pred ECCCCcEEEE--E-eccC-cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc------cccCEEEEEEecC
Confidence 9987762110 0 01 0 11232211122 57875444 4443 4689999999863210 0001122233222
Q ss_pred ccceEEEEEe--CCeEEEEeC-------CCeEEEeeCCCCccccCCCceeEEEec--------CCCcceEEEEEEecCCC
Q 041325 359 TKAILCLAVV--SNLLFSGSS-------DNTIRIWRRSSSVTDHQKGYSCLAVLE--------GHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~ 421 (450)
...-..+..+ +.++.+... .+.|.++|+.+....... +.+..+. .-...+..+.|+++|++
T Consensus 439 g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 516 (567)
T 1qks_A 439 GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD--PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE 516 (567)
T ss_dssp CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC--CCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC--CCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence 2222233444 346666552 458999999863100001 1112221 12457889999999983
Q ss_pred CCCCCCCCCceEEEEEcc----cCCcEEEEEeC
Q 041325 422 SNRNSDHSSTSFLVYSGS----LDCEIKIWQIR 450 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~----~Dg~i~iw~l~ 450 (450)
++++.. .++.|.++|.+
T Consensus 517 ------------~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 517 ------------VWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp ------------EEEEEECCTTSCCEEEEEETT
T ss_pred ------------EEEEeecCCCCCCcEEEEECC
Confidence 444422 47889998853
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.41 E-value=5.8e-10 Score=97.03 Aligned_cols=225 Identities=11% Similarity=0.103 Sum_probs=145.0
Q ss_pred CCCcceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCe
Q 041325 73 GNSSYIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~ 148 (450)
.+...--+..|+ +.++++...++.|..||..+++.... .....+.++++.+++ ++.+. ++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--------------~~~~~~~~i~~~~dG~l~v~~-~~~ 74 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV--------------TMDAPVSSVALRQSGGYVATI-GTK 74 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE--------------ECSSCEEEEEEBTTSSEEEEE-TTE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE--------------eCCCceEEEEECCCCCEEEEE-CCe
Confidence 444556677773 56777777889999999988764322 234578999999877 66665 567
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|.+||.++++.... ...... .....++.++++++|+++++.
T Consensus 75 l~~~d~~~g~~~~~--------------~~~~~~-------------------------~~~~~~~di~~d~dG~l~~~~ 115 (297)
T 3g4e_A 75 FCALNWKEQSAVVL--------------ATVDND-------------------------KKNNRFNDGKVDPAGRYFAGT 115 (297)
T ss_dssp EEEEETTTTEEEEE--------------EECCTT-------------------------CSSEEEEEEEECTTSCEEEEE
T ss_pred EEEEECCCCcEEEE--------------EecCCC-------------------------CCCCCCCCEEECCCCCEEEec
Confidence 99999987632111 110000 012357889999999976654
Q ss_pred eCC---------CcEEEEecCC-CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc--chhhhccccchh
Q 041325 229 SWD---------RTFKIWRTSD-FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL--RAALQVNKKHSL 296 (450)
Q Consensus 229 ~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~ 296 (450)
..+ ..-.+|.+.. ++... +. ......+.++|+|+++.++++.+.++.|.+|++. ++... ....
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~-~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---~~~~ 190 (297)
T 3g4e_A 116 MAEETAPAVLERHQGALYSLFPDHHVKK-YF-DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---NRRS 190 (297)
T ss_dssp EECCSBTTBCCTTCEEEEEECTTSCEEE-EE-EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---EEEE
T ss_pred CCcccccccccCCCcEEEEEECCCCEEE-Ee-eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---CcEE
Confidence 321 2334554432 33332 22 2445678999998766566777888999999873 33210 0111
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
...+......+..++++++|++.++...++.|.+||..+++.+ ..+..+...+++++|.+
T Consensus 191 ~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~-------------~~i~~p~~~~t~~~f~g 250 (297)
T 3g4e_A 191 VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL-------------QTVKLPVDKTTSCCFGG 250 (297)
T ss_dssp EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE-------------EEEECSSSBEEEEEEES
T ss_pred EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE-------------EEEECCCCCceEEEEeC
Confidence 2222223456788999999988888777889999999888755 33444456789999983
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-10 Score=99.04 Aligned_cols=245 Identities=9% Similarity=0.031 Sum_probs=150.1
Q ss_pred cCCCceEEEEEeCCe-EEEE--------eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCce
Q 041325 125 GNGDAVKSLVVLGDK-LFSA--------HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNY 195 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~-l~s~--------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
..-....+++|.++. ++.+ ..++.|.+||..+++...... +
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------~--------------- 64 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------P--------------- 64 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------C---------------
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------------c---------------
Confidence 334567889998666 4444 678899999987763211100 0
Q ss_pred EEEeecceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEE-eec---ccccceEEEEEeecCCcEEE
Q 041325 196 VQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLES-VKN---AHDDAINAIVVSKSNDGFVY 270 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---~~~~~v~~~~~~~~~~~~l~ 270 (450)
...++...+.+++++++ ++++++ +..+.|.+||.. ++.... ... .....+.++++.+++ .+++
T Consensus 65 ---------~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v 132 (314)
T 1pjx_A 65 ---------EVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWI 132 (314)
T ss_dssp ---------EETTEECCEEEEEECSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEE
T ss_pred ---------ccCCCCCCCceEEEecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEE
Confidence 00013346889999998 665554 445579999998 665433 221 112458899998743 3555
Q ss_pred EEcCC---------------CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc----CCCCEEEEe-eCCCcEEE
Q 041325 271 TGSAD---------------TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS----TDGTVLYSG-ACDRSILV 330 (450)
Q Consensus 271 ~~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~~g-~~dg~i~v 330 (450)
+...+ +.|..||.. ++ . ..+..+......++++ |+++.|+.+ ..++.|.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--------~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~ 202 (314)
T 1pjx_A 133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--------M-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS 202 (314)
T ss_dssp EECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--------E-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred EecCcccccccccccccCCCCeEEEECCC-CC--------E-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEE
Confidence 55444 567777754 22 1 1111233456889999 999766555 56789999
Q ss_pred EEcC-CCceeeeCCCCCCceeeeccccCCc-cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC
Q 041325 331 WERD-QGNYIVDGDDDSGHMVLKGALRGHT-KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406 (450)
Q Consensus 331 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 406 (450)
||.. +++... ......+..+. .....+++++ ++.++...++.|.+||..++ +.+..+..+
T Consensus 203 ~~~~~~g~~~~--------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g--------~~~~~~~~~ 266 (314)
T 1pjx_A 203 YDIKGPAKIEN--------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG--------QPKMRIRCP 266 (314)
T ss_dssp EEEEETTEEEE--------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB--------SCSEEEECS
T ss_pred EECCCCCcccc--------ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC--------cEeEEEeCC
Confidence 9986 343110 00112233333 4567788874 46666667889999998753 233444556
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
...+.+++|++++.. ++++...++.|..|++
T Consensus 267 ~~~~~~i~~~~dg~~------------l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 267 FEKPSNLHFKPQTKT------------IFVTEHENNAVWKFEW 297 (314)
T ss_dssp SSCEEEEEECTTSSE------------EEEEETTTTEEEEEEC
T ss_pred CCCceeEEECCCCCE------------EEEEeCCCCeEEEEeC
Confidence 678999999888872 3445556688988886
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-12 Score=112.11 Aligned_cols=166 Identities=11% Similarity=0.038 Sum_probs=123.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-----------EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-----------CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.++.+++++...++++|+.+ .+.+|++.+.+ ..... .+.. |..++| ++..|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 68999999999999999987 55569876443 11222 3455 999999 34477777 8899999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
||+++.. .......+...+.++.+.+. .+++++.||.|.+||+.++... .+..
T Consensus 111 ~dv~sl~--------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----------------~~~~ 163 (388)
T 1xip_A 111 LDLEELS--------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----------------QLAQ 163 (388)
T ss_dssp EESSSTT--------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----------------EEEE
T ss_pred EEchhhh--------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-----------------cccC
Confidence 9987654 11123345566788777654 3888899999999999976532 1446
Q ss_pred ceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCcee--EEEe------c---CCCcceEEEEEEecCC
Q 041325 361 AILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSC--LAVL------E---GHRRPVKCLTAVVDSD 420 (450)
Q Consensus 361 ~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~------~---~h~~~v~~l~~~~~~~ 420 (450)
.|+|++|+++-++.|..||.+++|+.... .. ...+ . +|...|.+|.|.+++.
T Consensus 164 ~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~--------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 164 NVTSFDVTNSQLAVLLKDRSFQSFAWRNG--------EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETT--------EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred CceEEEEcCCceEEEEcCCcEEEEcCCCc--------cccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 89999999887899999999999987753 22 3334 2 4788999999999887
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-11 Score=107.31 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=122.0
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
.+..+++ ...++++|+.++ +++|+++..+.... ........ .....+.. |+.|+|.++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~-~~~~~~~~-~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT-SDSTPLTF-KWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH-SSSCCCCC-SEEEECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc-cccccccc-eEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 4777777 588899999875 66698654331000 00000011 11234666 99999944447776 8899999999
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
.+..... ....|...+.++.+.+. .++++..||.|
T Consensus 114 ~sl~~~~-------------------------------------------~~~~~~~~v~~i~~~~p--~~av~~~dG~L 148 (388)
T 1xip_A 114 EELSEFR-------------------------------------------TVTSFEKPVFQLKNVNN--TLVILNSVNDL 148 (388)
T ss_dssp SSTTCEE-------------------------------------------EEEECSSCEEEEEECSS--EEEEEETTSEE
T ss_pred hhhhccC-------------------------------------------ccceeecceeeEEecCC--CEEEEECCCCE
Confidence 8763210 11134455667666543 28888999999
Q ss_pred EEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh---hcccceEEEE
Q 041325 235 KIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE---KHKSAVTALA 311 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~ 311 (450)
.+||+.++.... +...|.+++|+|. + ++.|..||.+++|+....+............+. +|...|.++.
T Consensus 149 ~v~dl~~~~~~~-----~~~~Vs~v~WSpk--G-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~ 220 (388)
T 1xip_A 149 SALDLRTKSTKQ-----LAQNVTSFDVTNS--Q-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT 220 (388)
T ss_dssp EEEETTTCCEEE-----EEESEEEEEECSS--E-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE
T ss_pred EEEEccCCcccc-----ccCCceEEEEcCC--c-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE
Confidence 999999877643 3468999999973 3 678999999999987655421000010111222 3678899999
Q ss_pred EcCCCCEEEE
Q 041325 312 LSTDGTVLYS 321 (450)
Q Consensus 312 ~~~~~~~l~~ 321 (450)
|.+++.++++
T Consensus 221 wl~~~~flv~ 230 (388)
T 1xip_A 221 ILSPQDFLAV 230 (388)
T ss_dssp ESSSSEEEEE
T ss_pred EecCCeEEEE
Confidence 9999998887
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-09 Score=96.07 Aligned_cols=278 Identities=11% Similarity=0.105 Sum_probs=163.4
Q ss_pred EEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCce
Q 041325 80 SLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 80 ~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~ 159 (450)
....++..++.++.+|.|..+|.++++............. ...........+...++.++.++.++.|..+|.++++.
T Consensus 48 ~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 48 HPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW--FSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C--CSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCE
T ss_pred ccEEECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc--ccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCE
Confidence 3344788888888899999999999987765332211000 00001112244555677799999999999999998854
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
........ . ....++ . .+..++.++.++.|..+|.
T Consensus 126 ~W~~~~~~----------------~-----------------------~~~~p~----~--~~~~v~v~~~~g~l~~~d~ 160 (376)
T 3q7m_A 126 AWQTKVAG----------------E-----------------------ALSRPV----V--SDGLVLIHTSNGQLQALNE 160 (376)
T ss_dssp EEEEECSS----------------C-----------------------CCSCCE----E--ETTEEEEECTTSEEEEEET
T ss_pred EEEEeCCC----------------c-----------------------eEcCCE----E--ECCEEEEEcCCCeEEEEEC
Confidence 22111100 0 000111 1 1446778888999999999
Q ss_pred CCCeEEEEeecccccce------EEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh-h--hHhhcccceEEE
Q 041325 240 SDFRCLESVKNAHDDAI------NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV-Q--TLEKHKSAVTAL 310 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~--~~~~~~~~i~~l 310 (450)
.+++.+...... ..+ ...... ++.++.++.++.+..+|..+++..-....... . .+..........
T Consensus 161 ~tG~~~W~~~~~--~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 161 ADGAVKWTVNLD--MPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp TTCCEEEEEECC--C-----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred CCCcEEEEEeCC--CCceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 999988777621 111 222222 34788888899999999987762111000000 0 000000000011
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCc
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
.. .+..++.++.++.|..+|..+++.+.... ......+...++.++.++.++.|..+|..++
T Consensus 236 ~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---------------~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG- 297 (376)
T 3q7m_A 236 VV--VNGVVFALAYNGNLTALDLRSGQIMWKRE---------------LGSVNDFIVDGNRIYLVDQNDRVMALTIDGG- 297 (376)
T ss_dssp EE--ETTEEEEECTTSCEEEEETTTCCEEEEEC---------------CCCEEEEEEETTEEEEEETTCCEEEEETTTC-
T ss_pred EE--ECCEEEEEecCcEEEEEECCCCcEEeecc---------------CCCCCCceEECCEEEEEcCCCeEEEEECCCC-
Confidence 11 34678888889999999999988663211 1223456667888999999999999999876
Q ss_pred cccCCCceeEEEec-CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 391 TDHQKGYSCLAVLE-GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 391 ~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.+.... .....+..... .+. .|+.++.+|.|.++|.
T Consensus 298 -------~~~w~~~~~~~~~~~~~~~--~~~-------------~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 298 -------VTLWTQSDLLHRLLTSPVL--YNG-------------NLVVGDSEGYLHWINV 335 (376)
T ss_dssp -------CEEEEECTTTTSCCCCCEE--ETT-------------EEEEECTTSEEEEEET
T ss_pred -------cEEEeecccCCCcccCCEE--ECC-------------EEEEEeCCCeEEEEEC
Confidence 2333332 11112222222 233 6788888898988875
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.35 E-value=6.3e-09 Score=90.42 Aligned_cols=223 Identities=12% Similarity=0.061 Sum_probs=138.9
Q ss_pred CCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 126 NGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 126 h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
+..-..+..|+++. +++...++.|..||..++....
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------------------- 49 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR----------------------------------------- 49 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-----------------------------------------
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-----------------------------------------
Confidence 33455678888632 5566678899999998763210
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc---cccceEEEEEeecCCcEEEEEcC-----
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA---HDDAINAIVVSKSNDGFVYTGSA----- 274 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~----- 274 (450)
......+.+++++++|+++++ . ++.|.+||..+++........ ....++.+++.|++. ++++...
T Consensus 50 ----~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~ 122 (297)
T 3g4e_A 50 ----VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAP 122 (297)
T ss_dssp ----EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBT
T ss_pred ----EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCccccc
Confidence 012346889999999995554 4 578999999887654333211 234578899987444 4443321
Q ss_pred ----CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE-eeCCCcEEEEEc--CCCceeeeCCCCCC
Q 041325 275 ----DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS-GACDRSILVWER--DQGNYIVDGDDDSG 347 (450)
Q Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-g~~dg~i~vwd~--~~~~~~~~~~~~~~ 347 (450)
...-.+|.+.... ....+.........++|+|+++.|+. .+.++.|.+|++ .+++..
T Consensus 123 ~~~~~~~~~l~~~d~~g--------~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~-------- 186 (297)
T 3g4e_A 123 AVLERHQGALYSLFPDH--------HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS-------- 186 (297)
T ss_dssp TBCCTTCEEEEEECTTS--------CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE--------
T ss_pred ccccCCCcEEEEEECCC--------CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc--------
Confidence 1223455443211 01111223345688999999987654 555789999997 344321
Q ss_pred ceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE-ecCC
Q 041325 348 HMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV-VDSD 420 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~ 420 (450)
.......+..+......++++ +++.++...++.|..||..++ +.+..+..+...+++++|. |+++
T Consensus 187 ~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG--------~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 187 NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG--------KRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC--------CEEEEEECSSSBEEEEEEESGGGC
T ss_pred CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc--------eEEEEEECCCCCceEEEEeCCCCC
Confidence 001111222333456778887 446666667788999998864 5667777777789999998 7776
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=8.8e-10 Score=97.43 Aligned_cols=281 Identities=10% Similarity=0.061 Sum_probs=165.8
Q ss_pred eCCEEEEeeC-----CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CC
Q 041325 84 AGKLLYGGSS-----NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QD 146 (450)
Q Consensus 84 d~~~l~tgs~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~d 146 (450)
|++.++.... ++.|.+.|..+++.+.... .+. .+ . ++++|++ ++.+. .+
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-----------vG~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-----------GGF-LP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-----------ECS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-----------CCC-CC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 5666666654 6799999999988776522 122 23 4 8999887 55554 36
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.|.+||..+.+. +..++..... . .........++++|||++++
T Consensus 109 ~~VsviD~~t~~v----------------~~~I~v~~g~-------------------r-~~~g~~P~~~a~spDGk~ly 152 (386)
T 3sjl_D 109 DYVEVFDPVTLLP----------------TADIELPDAP-------------------R-FLVGTYPWMTSLTPDGKTLL 152 (386)
T ss_dssp EEEEEECTTTCCE----------------EEEEEETTCC-------------------C-CCBSCCGGGEEECTTSSEEE
T ss_pred CEEEEEECCCCeE----------------EEEEECCCcc-------------------c-cccCCCCceEEEcCCCCEEE
Confidence 7899999998843 2222110000 0 00111345689999999998
Q ss_pred EEeC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-hhhhccccchhhhhHhhc
Q 041325 227 STSW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-AALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 227 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~ 303 (450)
++.. ++.|.++|+.+++.+..+.... . ..+.|.+...+++.+.||.+.+.++.. ++... ... ..+...
T Consensus 153 Van~~~~~~VsVID~~t~~vv~tI~v~g--~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~--~~~--~~~~~~ 223 (386)
T 3sjl_D 153 FYQFSPAPAVGVVDLEGKAFKRMLDVPD--C---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI--THT--EVFHPE 223 (386)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEECCS--E---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE--EEC--CCCSCT
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEECCC--c---ceeecCCCceeEEECCCCCEEEEECCCCCeEEE--eec--ceeccc
Confidence 8864 6899999999999999886322 1 223344555677888899999999875 44210 000 111111
Q ss_pred ccceE-EEEEc-CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec----cccCCccceEEEEEe--CCeEEEE
Q 041325 304 KSAVT-ALALS-TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG----ALRGHTKAILCLAVV--SNLLFSG 375 (450)
Q Consensus 304 ~~~i~-~l~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~ 375 (450)
...+. ...|. ++|++++ .+.+|.|++.|+.+...... ....... ...-.......++++ ++.++..
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~-----~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~ 297 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL-----PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 297 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC-----CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee-----cceeccccccccccccCCCcceeeECCCCCeEEEE
Confidence 12221 24564 6776555 45589999999976542110 0000000 000011122234444 4454444
Q ss_pred eC----------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE-cccCCcE
Q 041325 376 SS----------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS-GSLDCEI 444 (450)
Q Consensus 376 ~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s-~~~Dg~i 444 (450)
.. .+.|.+.|+.+. +.+..+.- ...+.+|++++|++. +|++ ...++.|
T Consensus 298 ~~~~~~~~hk~~~~~V~viD~~t~--------kv~~~i~v-g~~~~~lavs~D~~~------------~ly~tn~~~~~V 356 (386)
T 3sjl_D 298 VDQRDEWRHKTASRFVVVLDAKTG--------ERLAKFEM-GHEIDSINVSQDEKP------------LLYALSTGDKTL 356 (386)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTC--------CEEEEEEE-EEEECEEEECSSSSC------------EEEEEETTTTEE
T ss_pred eccccccccCCCCCEEEEEECCCC--------eEEEEEEC-CCCcceEEECCCCCe------------EEEEEcCCCCeE
Confidence 32 257899999874 55555532 246889999999852 4444 5668999
Q ss_pred EEEEeC
Q 041325 445 KIWQIR 450 (450)
Q Consensus 445 ~iw~l~ 450 (450)
.++|.+
T Consensus 357 sViD~~ 362 (386)
T 3sjl_D 357 YIHDAE 362 (386)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999863
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-09 Score=98.49 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=150.1
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC--eE
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH--KI 149 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg--~i 149 (450)
.....|++ +++++++...++.|++||.+++...... .. ..... ++|+++. |+++..++ .|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I 196 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTV 196 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------cc-CCCCc-eeEecCCCcEEEEecCCCceE
Confidence 35778888 5777777777899999999887765441 12 12233 8888765 77777765 78
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+|+........ .+.... ......+.+++++|++..|+.+.
T Consensus 197 ~~~d~~~~~~~~-------------~~g~~~--------------------------~~~~~~p~~iav~p~~g~lyv~d 237 (409)
T 3hrp_A 197 YVYMKASGWAPT-------------RIGQLG--------------------------STFSGKIGAVALDETEEWLYFVD 237 (409)
T ss_dssp EEEEGGGTTCEE-------------EEEECC--------------------------TTSCSCCCBCEECTTSSEEEEEC
T ss_pred EEEEcCCCceeE-------------Eeeecc--------------------------chhcCCcEEEEEeCCCCeEEEEE
Confidence 888876542100 000000 01234577899999544555577
Q ss_pred CCCcEEEEecCCCeEEEEe---ecccccce-E-EEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc-----hhhhh
Q 041325 230 WDRTFKIWRTSDFRCLESV---KNAHDDAI-N-AIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH-----SLVQT 299 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~---~~~~~~~v-~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~ 299 (450)
.++.|..||..++.....- .......- . .++++|.+..++++-..++.|+.|+............ ..-..
T Consensus 238 ~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~ 317 (409)
T 3hrp_A 238 SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLR 317 (409)
T ss_dssp TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEG
T ss_pred CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcc
Confidence 7889999999876533220 11122222 3 8999986666777778889999998753210000000 00000
Q ss_pred HhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCC-CCCceeeeccccCCccceEEEEEeC--CeEEEE
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDD-DSGHMVLKGALRGHTKAILCLAVVS--NLLFSG 375 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~ 375 (450)
....-.....++++|+|+++++-. .++.|+.|++.+++....... .......-......-.....+++++ +++++-
T Consensus 318 ~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp GGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred cccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 001123578999999999777777 789999999877753311100 0000000000011123467788875 366666
Q ss_pred eCCCeEEEeeC
Q 041325 376 SSDNTIRIWRR 386 (450)
Q Consensus 376 ~~dg~v~iwd~ 386 (450)
..+++|+.+++
T Consensus 398 ~~n~~Ir~i~~ 408 (409)
T 3hrp_A 398 AWGKAIRKYAV 408 (409)
T ss_dssp STTCEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 66777777654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-09 Score=98.88 Aligned_cols=250 Identities=10% Similarity=0.103 Sum_probs=151.6
Q ss_pred CceEEEEEeCCe-EE-EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK-LF-SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
.....|++.++. |+ +...++.|++||.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------------------------------------ 168 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------------------------------------ 168 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------------------------------------
Confidence 367889998766 44 4455689999999876321110
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCC--cEEEEecCCCeEEEEe---ecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDR--TFKIWRTSDFRCLESV---KNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
....... ++|+++++.|+++..++ .|.+|+...+.....+ .......+.+++++|.+. .|+.+..++.|+.
T Consensus 169 --~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~ 244 (409)
T 3hrp_A 169 --PGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGR 244 (409)
T ss_dssp --ETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEE
T ss_pred --ccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEE
Confidence 0111233 89999999988888766 7888888765443333 112446678899997444 5555777889999
Q ss_pred EeCcchhhhccccchhhhhHhhcccce-E-EEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCC-CCCceeeecccc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAV-T-ALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDD-DSGHMVLKGALR 356 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i-~-~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~ 356 (450)
||...+........ ...+....- . .++|+|+ +.++++-..++.|+.|+............ ...... -....
T Consensus 245 ~d~~~~~~~~~~~~----~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~d-g~~~~ 319 (409)
T 3hrp_A 245 FNVKTQEVTLIKQL----ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQD-GLREE 319 (409)
T ss_dssp EETTTCCEEEEEEC----CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBC-EEGGG
T ss_pred EECCCCCEEEEecc----cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCC-Ccccc
Confidence 99865541110000 011111111 3 8999995 55666666788999999764321111000 000000 00000
Q ss_pred CCccceEEEEEeC--CeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEecCC---------------CcceEEEEEEec
Q 041325 357 GHTKAILCLAVVS--NLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGH---------------RRPVKCLTAVVD 418 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~ 418 (450)
..-.....+++++ +++++-. .++.|+.|++.++ . +..+.++ -.....|++.++
T Consensus 320 ~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--------~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~ 390 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--------Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE 390 (409)
T ss_dssp CBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT--------E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS
T ss_pred cEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--------E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC
Confidence 1123457888874 4666666 7899999997654 1 2333332 245789999999
Q ss_pred CCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 419 SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+. ++++-..++.|+.++++
T Consensus 391 g~-------------lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 391 GG-------------YWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SE-------------EEEEESTTCEEEEEEEC
T ss_pred CC-------------EEEEECCCCeEEEEEeC
Confidence 77 88888888999988874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-08 Score=88.38 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=153.0
Q ss_pred CCCceEEEEEeCCe-EEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK-LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~-l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
....+.++++.+++ ++.+. .++.|.+||.. ++.... .++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~---------------~~~----------------------- 58 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF---------------EVP----------------------- 58 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE---------------ECS-----------------------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE---------------ECC-----------------------
Confidence 34578899998766 55554 57899999987 422100 000
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.....+.+++++++++++++...++.|..||.. ++............+..+++.+. ..++++...++.|..||.
T Consensus 59 ----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~ 132 (300)
T 2qc5_A 59 ----TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTA 132 (300)
T ss_dssp ----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECT
T ss_pred ----CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECC
Confidence 123468899999999887777668899999988 55432222123467889999863 346666666788999997
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
. ++.. ...+......+..+++.+++++.++...++.|..||. +++... .....+...+.
T Consensus 133 ~-g~~~-------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~------------~~~~~~~~~~~ 191 (300)
T 2qc5_A 133 D-GTIY-------EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE------------YPLPTNAAAPV 191 (300)
T ss_dssp T-SCEE-------EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE------------EECSSTTCCEE
T ss_pred C-CCEE-------EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE------------eeCCCCCCCcc
Confidence 6 3311 0011123456889999999997776666788999998 554321 11222334577
Q ss_pred EEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 364 CLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 364 ~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
++++++ ++.++....+.|.+||.... .....+..+...+.++++.+++. ++++...+
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~d~~g~-------------l~v~~~~~ 250 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITTTGE--------ISEYDIPTPNARPHAITAGKNSE-------------IWFTEWGA 250 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECTTCC--------EEEEECSSTTCCEEEEEECSTTC-------------EEEEETTT
T ss_pred eEEECCCCCEEEEccCCCEEEEEcCCCc--------EEEEECCCCCCCceEEEECCCCC-------------EEEeccCC
Confidence 888874 35555556678999997321 11122333456788999999887 66666667
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
+.|..|+.
T Consensus 251 ~~i~~~~~ 258 (300)
T 2qc5_A 251 NQIGRITN 258 (300)
T ss_dssp TEEEEECT
T ss_pred CeEEEECC
Confidence 77887763
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.6e-10 Score=111.44 Aligned_cols=198 Identities=17% Similarity=0.081 Sum_probs=126.2
Q ss_pred CceEEEEEccCCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC---------
Q 041325 211 DTVSALALSSDGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--------- 276 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------- 276 (450)
..+..++|+|||++|+.+..+ ..|++||+.+++.+.... +...+..++|+|+ + .|+.+..++
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-S-EEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-C-EEEEEEecCccccccccc
Confidence 467889999999999887643 469999999998765422 2233467899996 5 555554443
Q ss_pred -----cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-----cEEEEEcCCC--ceeeeCCC
Q 041325 277 -----KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-----SILVWERDQG--NYIVDGDD 344 (450)
Q Consensus 277 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-----~i~vwd~~~~--~~~~~~~~ 344 (450)
.|++|++.++.. ....+.....+...+..+.|+|||++|+..+.++ .|++||+.++ +..
T Consensus 239 ~~~~~~v~~~~lgt~~~----~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~----- 309 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQS----ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV----- 309 (741)
T ss_dssp CCCCCEEEEEETTSCGG----GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC-----
T ss_pred CCCCCEEEEEECCCCch----hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc-----
Confidence 388999865541 1112222223334588999999999988877544 8999999865 201
Q ss_pred CCCceeeeccccCCccc-eEEEEEeCCeEEEEeC----CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecC
Q 041325 345 DSGHMVLKGALRGHTKA-ILCLAVVSNLLFSGSS----DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
..+..+... ...+..+++.|+..+. ++.|.+||+.++. ......+..+...+..+.+. ++
T Consensus 310 --------~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~------~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 310 --------TALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST------PRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp --------EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS------CEEEEEECCCSSEEEEEEEE-BT
T ss_pred --------EEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc------cccEEEecCCCCeEEEEEEE-CC
Confidence 112222222 2233345776666665 3459999987531 12233334455567777776 44
Q ss_pred CCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
. ++++...|+..+||.+
T Consensus 375 ~-------------lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 375 R-------------LFASYIHDAKSQVLAF 391 (741)
T ss_dssp E-------------EEEEEEETTEEEEEEE
T ss_pred E-------------EEEEEEECCEEEEEEE
Confidence 4 8889999998888854
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-09 Score=102.33 Aligned_cols=322 Identities=11% Similarity=0.073 Sum_probs=176.7
Q ss_pred CCCccceeeeEEeecCCCc---------ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 58 PAASEHQCSATLKVKGNSS---------YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~---------~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
....+++.+-+++...... ....+++++..++.++.|+.|..+|..+++.+.......... ...
T Consensus 92 lD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-------~~~ 164 (677)
T 1kb0_A 92 IDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK-------GSL 164 (677)
T ss_dssp EETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC-------SSC
T ss_pred EECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC-------cCc
Confidence 3445666666666322211 113455678899999999999999999999877644320000 000
Q ss_pred ce-EEEEEeCCeEEEEeC------CCeEEEEEcCCCceeEEeccCcccc-cceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 129 AV-KSLVVLGDKLFSAHQ------DHKIRVWKIDNNTSAYYSTSGKLKN-KYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 129 ~v-~~l~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
.+ .......+.++.++. +|.|+.+|..+++............ ...... ... .. ...+...
T Consensus 165 ~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~-~~~---~g-~~~w~~~------- 232 (677)
T 1kb0_A 165 TITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDE-SMK---RA-ARTWDPS------- 232 (677)
T ss_dssp BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH-HHH---HH-HTTSCGG-------
T ss_pred ccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccc-ccc---cc-ccccccc-------
Confidence 11 111233556666654 7999999999996644332211100 000000 000 00 0000000
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCC-------------------cEEEEecCCCeEEEEeecccc--------
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDR-------------------TFKIWRTSDFRCLESVKNAHD-------- 253 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~-------- 253 (450)
.......+.......+++++++.+++.+..++ .|..+|..+++.+..++..+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 00000001122234678888888888877654 499999999999888763222
Q ss_pred cceEEEEEeecCC--cEEEEEcCCCcEEEEeCcchhhhccccchhhh---hH--------------hhcc----------
Q 041325 254 DAINAIVVSKSND--GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ---TL--------------EKHK---------- 304 (450)
Q Consensus 254 ~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~--------------~~~~---------- 304 (450)
.....+....++. ..++.++.+|.++++|.++++........... .+ .+..
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 1122222222222 47899999999999999888732111100000 00 0000
Q ss_pred cceEEEEEcCCCCEEEEeeCC-------------------------------------------CcEEEEEcCCCceeee
Q 041325 305 SAVTALALSTDGTVLYSGACD-------------------------------------------RSILVWERDQGNYIVD 341 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~d-------------------------------------------g~i~vwd~~~~~~~~~ 341 (450)
..-..++++|++.++++...+ |.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 001257889988888876432 7799999999886632
Q ss_pred CCCCCCceeeeccccCCccceE--EEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEec
Q 041325 342 GDDDSGHMVLKGALRGHTKAIL--CLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVD 418 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~ 418 (450)
... ..++. .+...+++++.++.||.+++||..++ +.+..+... .....-+.|..+
T Consensus 473 ~~~--------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG--------~~lw~~~~~~~~~~~p~~y~~~ 530 (677)
T 1kb0_A 473 VEH--------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG--------EKLWEAPTGTGVVAAPSTYMVD 530 (677)
T ss_dssp EEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--------CEEEEEECSSCCCSCCEEEEET
T ss_pred cCC--------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCC--------ceeeeeeCCCCcccCCEEEEeC
Confidence 111 11111 23345778888999999999999986 555555432 222334556677
Q ss_pred CC
Q 041325 419 SD 420 (450)
Q Consensus 419 ~~ 420 (450)
++
T Consensus 531 G~ 532 (677)
T 1kb0_A 531 GR 532 (677)
T ss_dssp TE
T ss_pred CE
Confidence 76
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-08 Score=89.61 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=135.5
Q ss_pred ceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEE
Q 041325 77 YIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVW 152 (450)
Q Consensus 77 ~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw 152 (450)
...+..| + +.++++...++.|..||.++++.... .....+.++++.+++ ++.++.+ .|.+|
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--------------~~~~~v~~i~~~~dg~l~v~~~~-gl~~~ 114 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--------------ALPFMGSALAKISDSKQLIASDD-GLFLR 114 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--------------ECSSCEEEEEEEETTEEEEEETT-EEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--------------ECCCcceEEEEeCCCeEEEEECC-CEEEE
Confidence 4566777 3 45677777789999999987654322 123578999998766 6666654 49999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC--
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW-- 230 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 230 (450)
|.++++.... ...... .....+.+++++++|+++++...
T Consensus 115 d~~~g~~~~~--------------~~~~~~-------------------------~~~~~~~~i~~d~~G~l~v~~~~~~ 155 (326)
T 2ghs_A 115 DTATGVLTLH--------------AELESD-------------------------LPGNRSNDGRMHPSGALWIGTMGRK 155 (326)
T ss_dssp ETTTCCEEEE--------------ECSSTT-------------------------CTTEEEEEEEECTTSCEEEEEEETT
T ss_pred ECCCCcEEEE--------------eeCCCC-------------------------CCCCCCCCEEECCCCCEEEEeCCCc
Confidence 9877642111 000000 01235789999999997665442
Q ss_pred ----CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc--ch-hhhccccchhhhhHhhc
Q 041325 231 ----DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL--RA-ALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 231 ----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~ 303 (450)
.+.|..++ +++... +. ........++|+|+++.++++...++.|.+||+. ++ ... .......+...
T Consensus 156 ~~~~~~~l~~~~--~g~~~~-~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---~~~~~~~~~~~ 228 (326)
T 2ghs_A 156 AETGAGSIYHVA--KGKVTK-LF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---KAEVFIDSTGI 228 (326)
T ss_dssp CCTTCEEEEEEE--TTEEEE-EE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---CCEEEEECTTS
T ss_pred CCCCceEEEEEe--CCcEEE-ee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---CceEEEECCCC
Confidence 24555556 455433 22 2334567899998665556666778899999985 33 210 00011112223
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
...+..++++++|++.++...++.|.+||. +++.+ ..+..+...+++++|.
T Consensus 229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~-------------~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI-------------ARYEVPGKQTTCPAFI 279 (326)
T ss_dssp SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE-------------EEEECSCSBEEEEEEE
T ss_pred CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEE-------------EEEECCCCCcEEEEEe
Confidence 345678999999988777767789999998 45433 2233344568999997
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-09 Score=94.54 Aligned_cols=281 Identities=11% Similarity=0.050 Sum_probs=167.9
Q ss_pred eCCEEEEeeC-C----CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CC
Q 041325 84 AGKLLYGGSS-N----GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QD 146 (450)
Q Consensus 84 d~~~l~tgs~-d----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~d 146 (450)
++++++.... + +.|.+.|..+.+.+.... .+. .+ .+++++++ ++.+. .+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~-----------vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD-----------GGF-LP--HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE-----------ECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE-----------CCC-CC--ceEECCCCCEEEEEeccccccccCCCC
Confidence 5665555544 2 699999999998776622 122 34 79999887 55554 46
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCC-CcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTL-NDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 225 (450)
+.|.++|..+.+.. ..++.. ..++ ........+.++|||+++
T Consensus 149 ~~VsviD~~t~~vv----------------~~I~v~g~~r~---------------------~~g~~P~~~~~spDGk~l 191 (426)
T 3c75_H 149 DYVEVFDPVTFLPI----------------ADIELPDAPRF---------------------LVGTYQWMNALTPDNKNL 191 (426)
T ss_dssp EEEEEECTTTCCEE----------------EEEEETTCCCC---------------------CBSCCGGGSEECTTSSEE
T ss_pred CEEEEEECCCCcEE----------------EEEECCCcccc---------------------ccCCCcceEEEcCCCCEE
Confidence 78999999988432 222110 0000 001134568899999999
Q ss_pred EEEeC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 226 YSTSW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 226 ~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
+++.. ++.|.+.|+.+++.+..+.... . ....|.+...+++.+.||.+.+.+...++..... . ..+...
T Consensus 192 yV~n~~~~~~VsVID~~t~kvv~~I~v~g--~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~--~--~~~~v~ 262 (426)
T 3c75_H 192 LFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN--T--EVFHTE 262 (426)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEECCS--E---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE--C--CCCSCT
T ss_pred EEEecCCCCeEEEEECCCCeEEEEEEcCC--c---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe--e--eeeccC
Confidence 98874 5789999999999998887322 1 3344445556777778898888887444311000 0 111111
Q ss_pred ccc-eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee--c--cccCCccceEEEEEe--CCeEEEEe
Q 041325 304 KSA-VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK--G--ALRGHTKAILCLAVV--SNLLFSGS 376 (450)
Q Consensus 304 ~~~-i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~~~~~~--~~~l~s~~ 376 (450)
..+ ...+.+.+++..++.....+.|.+.|........... .... . ...........++++ ++.++...
T Consensus 263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~-----~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP-----IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC-----EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee-----eeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence 111 1235688998888777888999999987654221000 0000 0 000001111123444 45444443
Q ss_pred C----------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEE
Q 041325 377 S----------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIK 445 (450)
Q Consensus 377 ~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~ 445 (450)
. ++.|.+.|..+. +.+..+.. ......++|+|+++. +++++. .++.|.
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~--------kvv~~I~v-g~~P~gia~spDg~~------------~lyv~n~~s~~Vs 396 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETG--------ERINKIEL-GHEIDSINVSQDAEP------------LLYALSAGTQTLH 396 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTC--------CEEEEEEE-EEEECEEEECCSSSC------------EEEEEETTTTEEE
T ss_pred cccccccccCCCCEEEEEECCCC--------eEEEEEEC-CCCcCeEEEccCCCE------------EEEEEcCCCCeEE
Confidence 2 357999999874 55555542 235789999999872 455555 699999
Q ss_pred EEEeC
Q 041325 446 IWQIR 450 (450)
Q Consensus 446 iw~l~ 450 (450)
++|++
T Consensus 397 VID~~ 401 (426)
T 3c75_H 397 IYDAA 401 (426)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99964
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.7e-09 Score=90.29 Aligned_cols=228 Identities=12% Similarity=0.114 Sum_probs=138.0
Q ss_pred cCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 125 GNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
..........|.+++ +++...++.|..|+.... .
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~------------------------------------------ 78 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-V------------------------------------------ 78 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-E------------------------------------------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-E------------------------------------------
Confidence 344567788888654 667777899999987432 1
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec---ccccceEEEEEeecCCcEEEE----EcC
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---AHDDAINAIVVSKSNDGFVYT----GSA 274 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~----~~~ 274 (450)
..+..+...+..++++++|+++++...++.|..||.. ++....... .....++.+++.+++. ++++ |..
T Consensus 79 --~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~ 154 (305)
T 3dr2_A 79 --DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLR 154 (305)
T ss_dssp --EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGS
T ss_pred --EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCcc
Confidence 0111244568899999999977666566889999986 553322211 1123467889987433 5554 332
Q ss_pred -------------CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC------CcEEEEEcCC
Q 041325 275 -------------DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD------RSILVWERDQ 335 (450)
Q Consensus 275 -------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d------g~i~vwd~~~ 335 (450)
.+.|..||..+++. .. +. .......++|+||++.|+.+... +.|.+|++..
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~--------~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPL--------QR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCC--------EE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred ccccccccccccCCCeEEEEcCCCCcE--------EE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 25677777655441 11 11 33456789999999988877665 7899999875
Q ss_pred CceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEE
Q 041325 336 GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT 414 (450)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 414 (450)
+. +.. .... . .........+.++.+ .|.++..+ .|.+|+... +.+..+..+. .+.+++
T Consensus 225 ~~-l~~------~~~~-~--~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~g---------~~~~~~~~~~-~~~~~~ 283 (305)
T 3dr2_A 225 GA-LHD------RRHF-A--SVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSDG---------QLLGHIPTPG-TASNCT 283 (305)
T ss_dssp TE-EEE------EEEE-E--CCSSSCCCSEEECTTSCEEECCSS-EEEEECTTS---------CEEEEEECSS-CCCEEE
T ss_pred CC-ccC------CeEE-E--ECCCCCCCeEEECCCCCEEEecCC-cEEEECCCC---------CEEEEEECCC-ceeEEE
Confidence 43 100 0000 0 111222345666633 35555544 499999753 3455555444 588999
Q ss_pred EEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 415 AVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
|.++++ .|+.++.++.
T Consensus 284 f~~d~~-------------~L~it~~~~l 299 (305)
T 3dr2_A 284 FDQAQQ-------------RLFITGGPCL 299 (305)
T ss_dssp ECTTSC-------------EEEEEETTEE
T ss_pred EeCCCC-------------EEEEEcCCeE
Confidence 998877 6666666543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=5.7e-08 Score=85.54 Aligned_cols=216 Identities=13% Similarity=0.015 Sum_probs=131.5
Q ss_pred ceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
-..+..|+++. +++...++.|..||.+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-------------------------------------------- 85 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-------------------------------------------- 85 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------------------------------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------------------
Confidence 34567788752 5666678899999988763210
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc---cccceEEEEEeecCCcEEEEEcC------CC
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA---HDDAINAIVVSKSNDGFVYTGSA------DT 276 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~------dg 276 (450)
+ .....+.+++++++++++++. .+ .|.+||..+++........ ....++.+.+++++. ++++... .+
T Consensus 86 ~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~ 161 (326)
T 2ghs_A 86 H-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAG 161 (326)
T ss_dssp E-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCE
T ss_pred E-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCce
Confidence 0 122368899999999877654 44 4999999887754332211 124688999997544 4443321 24
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcC--CC-ceeeeCCCCCCceeee
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERD--QG-NYIVDGDDDSGHMVLK 352 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~ 352 (450)
.|..++ +++ ...+.........++|+|+++.|+.+ +.++.|.+||+. ++ +.. .....
T Consensus 162 ~l~~~~--~g~---------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~--------~~~~~ 222 (326)
T 2ghs_A 162 SIYHVA--KGK---------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG--------KAEVF 222 (326)
T ss_dssp EEEEEE--TTE---------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS--------CCEEE
T ss_pred EEEEEe--CCc---------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc--------CceEE
Confidence 455555 332 11111223456789999999877555 457899999986 44 211 00011
Q ss_pred ccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE-ecCC
Q 041325 353 GALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV-VDSD 420 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~ 420 (450)
..+.........+.++ +++.++...++.|.+||.. + +.+..+..+...+++++|. +++.
T Consensus 223 ~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g--------~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 223 IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G--------NHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C--------CEEEEEECSCSBEEEEEEESTTSC
T ss_pred EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C--------CEEEEEECCCCCcEEEEEecCCCC
Confidence 1122223445677776 4455555567889999974 2 3455566666779999998 7766
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=8e-09 Score=100.28 Aligned_cols=299 Identities=12% Similarity=0.084 Sum_probs=165.0
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEe------CCCeEEEEEc
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAH------QDHKIRVWKI 154 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~------~dg~i~iw~~ 154 (450)
+++++..++.++.||.|..+|..+++.+............ ......+ ....+.++.++ .+|.|+.||.
T Consensus 117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~--~~~~~sP----~v~~g~v~vg~~~~~~~~~g~v~a~D~ 190 (689)
T 1yiq_A 117 VAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRS--YTITGAP----RVVNGKVVIGNGGAEFGVRGYVTAYDA 190 (689)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSC--CBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred cEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCC--ccccCCc----EEECCEEEEEeCCCccCCCCEEEEEEC
Confidence 4557888999999999999999999987764432000000 0001111 12355565554 3789999999
Q ss_pred CCCceeEEeccCc-ccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-ecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 155 DNNTSAYYSTSGK-LKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-VHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
++++......... ....... ...+... ... +....... .++......++++++..+++.+..++
T Consensus 191 ~tG~~~W~~~~~~~~p~~~~~--------~~~~~~~--~~~----~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g 256 (689)
T 1yiq_A 191 ETGKEAWRFYTVPGDPKLPPE--------GKGMEIA--AKT----WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNG 256 (689)
T ss_dssp TTCCEEEEEESSCCCTTSCCC--------SHHHHHH--HTT----CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred CCCcEEEEecccCCCcccccc--------ccccccc--ccc----cCCceeeecCCCCccccceeEcCCCCEEEEeCCCC
Confidence 9997644322110 0000000 0000000 000 00000000 01112223578888888888888776
Q ss_pred c-------------------EEEEecCCCeEEEEeecccc--------cceEEEEEeecCC--cEEEEEcCCCcEEEEeC
Q 041325 233 T-------------------FKIWRTSDFRCLESVKNAHD--------DAINAIVVSKSND--GFVYTGSADTKIKVWKK 283 (450)
Q Consensus 233 ~-------------------i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~ 283 (450)
. |..+|..+++.+..++..+. ..+........+. ..++.++.+|.++++|.
T Consensus 257 ~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~ 336 (689)
T 1yiq_A 257 SLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDR 336 (689)
T ss_dssp ESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred CccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEEC
Confidence 3 99999999999988763211 1111112221121 26888999999999999
Q ss_pred cchhhhccccchh--------------h--h--h--Hhhccc-----------ceEEEEEcCCCCEEEEeeC--------
Q 041325 284 LRAALQVNKKHSL--------------V--Q--T--LEKHKS-----------AVTALALSTDGTVLYSGAC-------- 324 (450)
Q Consensus 284 ~~~~~~~~~~~~~--------------~--~--~--~~~~~~-----------~i~~l~~~~~~~~l~~g~~-------- 324 (450)
++++......... + . . +..... .-..++|+|+..++++...
T Consensus 337 ~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 416 (689)
T 1yiq_A 337 ATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEH 416 (689)
T ss_dssp TTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEEC
T ss_pred CCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeee
Confidence 8887421100000 0 0 0 000000 1123788998888877632
Q ss_pred -------------------------------------CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce-EEEE
Q 041325 325 -------------------------------------DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI-LCLA 366 (450)
Q Consensus 325 -------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~ 366 (450)
+|.|+.||+.+++.+.... .+.... -.+.
T Consensus 417 ~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-------------~~~~~~~g~~~ 483 (689)
T 1yiq_A 417 IPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-------------YVTIFNGGTLS 483 (689)
T ss_dssp CSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-------------ESSSCCCCEEE
T ss_pred ccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-------------CCCCccCccce
Confidence 3779999999988663211 111111 1334
Q ss_pred EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc-ceEEEEEEecCC
Q 041325 367 VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR-PVKCLTAVVDSD 420 (450)
Q Consensus 367 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~ 420 (450)
-.+.+++.++.||.++.||.+++ +.+..+..... ...-+.|..+++
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG--------~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTG--------EKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTC--------CEEEEEECSSCCCSCCEEEEETTE
T ss_pred ECCCEEEEECCCCcEEEEECCCC--------ccceeeeCCCCcccCceEEEECCE
Confidence 45779999999999999999986 55655543322 224466677776
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.18 E-value=9.8e-10 Score=97.21 Aligned_cols=263 Identities=17% Similarity=0.143 Sum_probs=154.6
Q ss_pred CCcceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEE
Q 041325 74 NSSYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVW 152 (450)
Q Consensus 74 h~~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw 152 (450)
+...+.++..+ +..|+.++.+ |..+|. +++....... ............+.++.++.++.|..+
T Consensus 58 ~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~------------~~~~~~~~~~~~~~l~v~t~~~~l~~~ 122 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDT------------KKAIVSDFTIFEDILYVTSMDGHLYAI 122 (330)
T ss_dssp GGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----------------CCEEEETTEEEEECTTSEEEEE
T ss_pred CCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEEC------------CCCcccCceEECCEEEEEecCCEEEEE
Confidence 34455667763 5667767665 888886 4443222110 111122223335668888888889999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
|.+ ++..... ......+.++...+++. ++.++.++
T Consensus 123 d~~-g~~~~~~-------------------------------------------~~~~~~~~~~~~~~~g~-l~vgt~~~ 157 (330)
T 3hxj_A 123 NTD-GTEKWRF-------------------------------------------KTKKAIYATPIVSEDGT-IYVGSNDN 157 (330)
T ss_dssp CTT-SCEEEEE-------------------------------------------ECSSCCCSCCEECTTSC-EEEECTTS
T ss_pred cCC-CCEEEEE-------------------------------------------cCCCceeeeeEEcCCCE-EEEEcCCC
Confidence 887 5221100 01122344555666676 56677789
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
.|..+|.. ++.+..+. .....+.++... .++.+..++ +.|..+| .+++ ...........+.++..
T Consensus 158 ~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d--~~g~l~v~t--~~l~~~d-~~g~--------~~~~~~~~~~~~~~~~~ 222 (330)
T 3hxj_A 158 YLYAINPD-GTEKWRFK-TNDAITSAASIG--KDGTIYFGS--DKVYAIN-PDGT--------EKWNFYAGYWTVTRPAI 222 (330)
T ss_dssp EEEEECTT-SCEEEEEE-CSSCCCSCCEEC--TTCCEEEES--SSEEEEC-TTSC--------EEEEECCSSCCCSCCEE
T ss_pred EEEEECCC-CCEeEEEe-cCCCceeeeEEc--CCCEEEEEe--CEEEEEC-CCCc--------EEEEEccCCcceeceEE
Confidence 99999998 77776665 334556666665 344566666 7899999 4443 11122223355778888
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCcc
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVT 391 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~ 391 (450)
.++|. |..++.++.|..+|. +++.+.. .......+.++... ...|..++.+|.|..+|. ++
T Consensus 223 ~~~g~-l~v~t~~~gl~~~~~-~g~~~~~-------------~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g-- 284 (330)
T 3hxj_A 223 SEDGT-IYVTSLDGHLYAINP-DGTEKWR-------------FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DG-- 284 (330)
T ss_dssp CTTSC-EEEEETTTEEEEECT-TSCEEEE-------------EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TS--
T ss_pred CCCCe-EEEEcCCCeEEEECC-CCCEeEE-------------eeCCCCccccceEcCCCeEEEecCCCCEEEECC-CC--
Confidence 87775 555677888888874 4443321 11111222334455 558888889989999985 33
Q ss_pred ccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 392 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.+..+......+.++...+++. |..++.+|.+++...
T Consensus 285 ------~~~~~~~~~~~~~~~~~~d~~g~--------------l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 285 ------TEKWNFETGSWIIATPVIDENGT--------------IYFGTRNGKFYALFN 322 (330)
T ss_dssp ------CEEEEEECSSCCCSCCEECTTCC--------------EEEECTTSCEEEEEC
T ss_pred ------cEEEEEEcCCccccceEEcCCCE--------------EEEEcCCCeEEEEec
Confidence 33333433445566666656665 667888999988654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-09 Score=105.06 Aligned_cols=241 Identities=11% Similarity=0.111 Sum_probs=142.2
Q ss_pred CCCcceEEEEE--eCCEEEE-----eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYG-----GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~t-----gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
+|...+..++| ||++||- |+.+..|++||+.+++.... .+.+ .....++|+ |+ |+.+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----------~~~~--~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----------PLKD--VKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------EEEE--EESCCCEEE-TTTEEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------ccCC--ceeccEEEe-CCCEEEEE
Confidence 45567888888 8998883 44446899999999885433 0111 112456787 54 7777
Q ss_pred eCCC-------------eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec-C
Q 041325 144 HQDH-------------KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH-H 209 (450)
Q Consensus 144 ~~dg-------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 209 (450)
+.+. .|++|++.+..... ..+. .... |
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~------------~~v~---------------------------~~~~~~ 232 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDD------------RLVF---------------------------GAIPAQ 232 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGC------------EEEE---------------------------SCSGGG
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccc------------eEEE---------------------------ecCCCC
Confidence 6664 38888887663100 0000 0012 3
Q ss_pred CCceEEEEEccCCCEEEEEeC----CCcEEEEecCCCe-EEEEeecccccceEEEEEeecCCcEEEEEcCC---CcEEEE
Q 041325 210 VDTVSALALSSDGSLLYSTSW----DRTFKIWRTSDFR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD---TKIKVW 281 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vw 281 (450)
...+..+.++|||++|+.... ++.|.++|+.++. ....+. .+....... +.+.++.+++.+..+ +.|..+
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~ 310 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTV 310 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 345678899999998865442 3589999997763 334444 344444444 555566666666554 678889
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+.++... ....+..+...+. .|+++++.|+....++ .|++||+..+... ......
T Consensus 311 d~~~~~~~------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~-------------~l~~p~ 369 (693)
T 3iuj_A 311 DAANPGPA------HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR-------------EVALPG 369 (693)
T ss_dssp ETTSCCGG------GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE-------------EECCSS
T ss_pred eCCCCCcc------ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE-------------EeecCC
Confidence 98765410 1122334444444 8888898887766544 6889988754321 111122
Q ss_pred ccceEEEEEe--CCeEEEEeCC----CeEEEeeCCCC
Q 041325 359 TKAILCLAVV--SNLLFSGSSD----NTIRIWRRSSS 389 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~d----g~v~iwd~~~~ 389 (450)
...+..+.++ ++.++....+ +.|..||+.++
T Consensus 370 ~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 370 LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 3345555554 3333333333 78899988764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.5e-09 Score=100.50 Aligned_cols=213 Identities=11% Similarity=0.109 Sum_probs=122.7
Q ss_pred EeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEE
Q 041325 83 IAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 83 ~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
..+..++.++.++.|..+|..+++.+............... .....-..+.+..+.++.++.|+.|..+|.++++....
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEA-CCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGC-TTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccc-cccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeee
Confidence 36777888888899999999999987764432211000000 00000123445677799999999999999999965432
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe------CCCcEEE
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------WDRTFKI 236 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i 236 (450)
...... ... .......++ + .++ .++.++ .+|.|..
T Consensus 147 ~~~~~~--------------~~~-------------------~~~~~~sP~--v---~~g-~v~vg~~~~~~~~~g~v~a 187 (689)
T 1yiq_A 147 VDTRAD--------------HKR-------------------SYTITGAPR--V---VNG-KVVIGNGGAEFGVRGYVTA 187 (689)
T ss_dssp EECCSC--------------TTS-------------------CCBCCSCCE--E---ETT-EEEECCBCTTTCCBCEEEE
T ss_pred ecCcCC--------------CCC-------------------CccccCCcE--E---ECC-EEEEEeCCCccCCCCEEEE
Confidence 211100 000 000000111 1 133 344443 3689999
Q ss_pred EecCCCeEEEEeecccc------------------------------cceEEEEEeecCCcEEEEEcCCCc---------
Q 041325 237 WRTSDFRCLESVKNAHD------------------------------DAINAIVVSKSNDGFVYTGSADTK--------- 277 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~------------------------------~~v~~~~~~~~~~~~l~~~~~dg~--------- 277 (450)
||..+|+.+..+..... .....+++.|. .++++.+..++.
T Consensus 188 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~ 266 (689)
T 1yiq_A 188 YDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQ 266 (689)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHT
T ss_pred EECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCC
Confidence 99999998877652110 01124677763 457888877764
Q ss_pred ----------EEEEeCcchhhhccccchhhhh-Hh--h--cccceEEEEEcCCCC---EEEEeeCCCcEEEEEcCCCcee
Q 041325 278 ----------IKVWKKLRAALQVNKKHSLVQT-LE--K--HKSAVTALALSTDGT---VLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 278 ----------i~vwd~~~~~~~~~~~~~~~~~-~~--~--~~~~i~~l~~~~~~~---~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
|..+|.++++.. +..... .. . ....+.......+|+ .++.++.+|.++++|..+++.+
T Consensus 267 ~~gd~~y~~~v~AlD~~TG~~~----W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 267 AKGDNLFLSSIVAVNADTGEYV----WHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp TCSCCTTTTEEEEEETTTCCEE----EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCCceeeeeEEEEEccCCcee----EeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 999999888721 111000 00 0 111222222223565 7899999999999999999987
Q ss_pred e
Q 041325 340 V 340 (450)
Q Consensus 340 ~ 340 (450)
.
T Consensus 343 ~ 343 (689)
T 1yiq_A 343 S 343 (689)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.7e-12 Score=111.91 Aligned_cols=180 Identities=16% Similarity=0.158 Sum_probs=97.8
Q ss_pred eCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 136 LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 136 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
.++.+++++.||.|+.||..+++.... .. . +.+.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~----------------~~---------------------------~--~~~~s 42 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT----------------LK---------------------------E--DPVLQ 42 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE----------------EE---------------------------C--CCSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE----------------ec---------------------------C--CCcee
Confidence 456699999999999999999854221 11 0 12223
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEE-EEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINA-IVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
..+..++..+++++.||.|+.||..+++.+..+.......+.+ ..+. .++.+++++.++.|+.||.++++
T Consensus 43 ~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~------- 113 (369)
T 2hz6_A 43 VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGE------- 113 (369)
T ss_dssp CC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------
T ss_pred cceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCc-------
Confidence 3344567778888899999999999988776664221111111 1111 24467888889999999998887
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-----
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS----- 369 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----- 369 (450)
.+..+..+. ...++|++..+++++.|+.|+.||.++++.+.... ... .....+.+
T Consensus 114 -~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-----------~~~----~~~~~~~~~~~~~ 173 (369)
T 2hz6_A 114 -KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-----------YFD----YAASLPEDDVDYK 173 (369)
T ss_dssp ------------------------EEEEEEEEEEECCCSSSSSCCCEEE-----------EEE----ECCBCCCCCTTCC
T ss_pred -EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-----------ccc----ccCccccCCcccc
Confidence 333333222 23456688899999999999999999987552111 001 11122223
Q ss_pred CeEEEEeCCCeEEEeeCCCC
Q 041325 370 NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~~~ 389 (450)
+.+++++.||.|+.||..++
T Consensus 174 ~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 174 MSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp CCEEEEETSCEEEEECTTTC
T ss_pred ceEEEECCCCEEEEEECCCC
Confidence 56788899999999999876
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.3e-08 Score=98.68 Aligned_cols=213 Identities=8% Similarity=0.076 Sum_probs=125.4
Q ss_pred EeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEE
Q 041325 83 IAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 83 ~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
..+..++.++.++.|..+|..+++.+................. ......+++.++.++.++.|+.|..+|..+++....
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC-DVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS-CSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccc-cCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 3577777777889999999999998776443321100000000 001123455677899999999999999999965432
Q ss_pred eccC-cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC------CCcEE
Q 041325 163 STSG-KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW------DRTFK 235 (450)
Q Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~ 235 (450)
.... .... . ......++ . .+..++.++. ++.|+
T Consensus 154 ~~~~~~~~~--------------~--------------------~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~ 193 (677)
T 1kb0_A 154 QNTFEGQKG--------------S--------------------LTITGAPR----V--FKGKVIIGNGGAEYGVRGYIT 193 (677)
T ss_dssp EETTTTCCS--------------S--------------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEE
T ss_pred ecCCcCcCc--------------C--------------------cccccCcE----E--ECCEEEEEecccccCCCCEEE
Confidence 2211 0000 0 00000111 1 1334455443 68999
Q ss_pred EEecCCCeEEEEeeccccc-------------------------------ceEEEEEeecCCcEEEEEcCCC--------
Q 041325 236 IWRTSDFRCLESVKNAHDD-------------------------------AINAIVVSKSNDGFVYTGSADT-------- 276 (450)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~-------------------------------~v~~~~~~~~~~~~l~~~~~dg-------- 276 (450)
.+|..+++.+..+...... ....+++.+. .+.++.+..++
T Consensus 194 a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~ 272 (677)
T 1kb0_A 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVR 272 (677)
T ss_dssp EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHH
T ss_pred EEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCC
Confidence 9999999998777521111 1124677764 44777776654
Q ss_pred -----------cEEEEeCcchhhhccccchhhhhHhhc-------ccceEEEEEcCCC---CEEEEeeCCCcEEEEEcCC
Q 041325 277 -----------KIKVWKKLRAALQVNKKHSLVQTLEKH-------KSAVTALALSTDG---TVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 277 -----------~i~vwd~~~~~~~~~~~~~~~~~~~~~-------~~~i~~l~~~~~~---~~l~~g~~dg~i~vwd~~~ 335 (450)
.|..+|.++++.. +... ...| ......+....+| +.++.++.+|.|+++|..+
T Consensus 273 ~~~~gd~~~~~sv~AlD~~TG~~~----W~~~--~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t 346 (677)
T 1kb0_A 273 SPKGGDNLYLASIVALDPDTGKYK----WHYQ--ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN 346 (677)
T ss_dssp STTCCCCTTTTEEEEECTTTCCEE----EEEE--SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred CccCCCCeeeEEEEEEECCCCCEE----EEEe--cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC
Confidence 4889999887721 1110 0011 1222333444477 6899999999999999999
Q ss_pred CceeeeCC
Q 041325 336 GNYIVDGD 343 (450)
Q Consensus 336 ~~~~~~~~ 343 (450)
++.+....
T Consensus 347 G~~l~~~~ 354 (677)
T 1kb0_A 347 GKFISAKN 354 (677)
T ss_dssp CCEEEEEE
T ss_pred CCEecccc
Confidence 99876443
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.7e-07 Score=82.52 Aligned_cols=261 Identities=8% Similarity=-0.026 Sum_probs=153.2
Q ss_pred CCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeEE
Q 041325 56 QAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVA 123 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 123 (450)
..+...+++.+.++. .-..+ .+++ ||++++.+. .++.|.+||..+.+............ .
T Consensus 50 ~v~D~~t~~~~~~i~--~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~----~ 121 (373)
T 2mad_H 50 WVLDAGSGSILGHVN--GGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR----F 121 (373)
T ss_pred EEEECCCCeEEEEec--CCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc----c
Confidence 344455677777776 33334 6666 899999886 36789999998877665532210000 0
Q ss_pred ecCCCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeee-ccCCCcceeEeeecCceEEE
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIAT-LPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (450)
.+......++++|++ |+.+.. ++.|.++| .+++. +.. ++.
T Consensus 122 -~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~----------------~~~~i~~----------------- 166 (373)
T 2mad_H 122 -DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS----------------DDQLLSS----------------- 166 (373)
T ss_pred -ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE----------------EeEEcCC-----------------
Confidence 011234578899877 666653 57899999 87732 222 211
Q ss_pred eecceeeeecCCCceEEEEEccCC-CEEEEEeCCCcEEEEecCCCeEEEEeec----ccccc-eEEEEEeecCCcEEEEE
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDG-SLLYSTSWDRTFKIWRTSDFRCLESVKN----AHDDA-INAIVVSKSNDGFVYTG 272 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~-v~~~~~~~~~~~~l~~~ 272 (450)
. .++.+.+++ +.+++.+.||.+.++|. +++....... ....+ .....+.+....++++.
T Consensus 167 -----------~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 231 (373)
T 2mad_H 167 -----------P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV 231 (373)
T ss_pred -----------C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence 0 123344543 45566778999999999 7776633220 11111 12344555445444444
Q ss_pred cCCCcEEEEeCcchhhhccccchhhh----hHhhcccceEEEEEcCCCCEEEEeeC----------CCcEEEEEcCCCce
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQ----TLEKHKSAVTALALSTDGTVLYSGAC----------DRSILVWERDQGNY 338 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~ 338 (450)
..+.+.+.|+............... ...........++++|+++.++++.. ++.|.++|..+++.
T Consensus 232 -~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 232 -YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred -CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 6788999998654311101000000 00001233455789999998888653 35799999998876
Q ss_pred eeeCCCCCCceeeeccccCCccceEEEEEe--CC-eEEEEe-CCCeEEEeeCCCC
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILCLAVV--SN-LLFSGS-SDNTIRIWRRSSS 389 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~-~dg~v~iwd~~~~ 389 (450)
+. .+.. .....+++|+ ++ +++++. .++.|.++|..++
T Consensus 311 v~-------------~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 311 SS-------------QISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EE-------------EEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 52 2211 1235677777 45 677776 5899999999874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=4.5e-08 Score=86.58 Aligned_cols=285 Identities=10% Similarity=0.008 Sum_probs=161.6
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVV 122 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 122 (450)
.......+.+.+.++.. -..+ . +++ ||++++.+. .++.|.+||..+.+.........+..
T Consensus 61 V~ViD~~t~~v~~~I~v--G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r---- 132 (386)
T 3sjl_D 61 QFVIDGEAGRVIGMIDG--GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR---- 132 (386)
T ss_dssp EEEEETTTTEEEEEEEE--CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC----
T ss_pred EEEEECCCCeEEEEEEC--CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc----
Confidence 34455667788888873 3334 3 666 898887765 36789999999998776532211000
Q ss_pred EecCCCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
.........+++++|+ ++.+.. ++.|.++|+.+.+ .+..++...
T Consensus 133 -~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~----------------vv~tI~v~g--------------- 180 (386)
T 3sjl_D 133 -FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA----------------FKRMLDVPD--------------- 180 (386)
T ss_dssp -CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE----------------EEEEEECCS---------------
T ss_pred -cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc----------------EEEEEECCC---------------
Confidence 0012245678899877 666653 6899999999983 333332110
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-CeEEEEee---cccccceE-EEEEeecCCcEEEEEc
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD-FRCLESVK---NAHDDAIN-AIVVSKSNDGFVYTGS 273 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~---~~~~~~v~-~~~~~~~~~~~l~~~~ 273 (450)
. ...+....+.+++.+.||.+.+.++.+ ++...... .....++. ...|.+ .++.++..+
T Consensus 181 --------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-~dG~~~~vs 244 (386)
T 3sjl_D 181 --------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPT 244 (386)
T ss_dssp --------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEB
T ss_pred --------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc-CCCcEEEEe
Confidence 0 112222345566667777777777765 44322111 01112221 235543 233444466
Q ss_pred CCCcEEEEeCcchhhhccccchhhh--hH-h-hcccceEEEEEcCCCCEEEEeeC----------CCcEEEEEcCCCcee
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQ--TL-E-KHKSAVTALALSTDGTVLYSGAC----------DRSILVWERDQGNYI 339 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~--~~-~-~~~~~i~~l~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~ 339 (450)
.+|.|.+.|+............... .. . -.......++++++++.++.... .+.|.++|+.+++.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 6899999998665422111111100 00 1 12234456788999998888653 257999999998865
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEe--CC-eEEEE-eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVV--SN-LLFSG-SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
. .+.. ...+..++++ ++ +|++. ..++.|.++|..++ +.+..+..- ..-+.|.+
T Consensus 325 ~-------------~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~--------k~~~~i~~~-~~p~~l~~ 381 (386)
T 3sjl_D 325 A-------------KFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG--------EELRSVNQL-GHGPQVIT 381 (386)
T ss_dssp E-------------EEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC--------CEEEEECCC-CSSCCEEE
T ss_pred E-------------EEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC--------cEEEEecCC-CCCceeEE
Confidence 2 1111 1245677776 33 55554 45899999999875 555555422 22334444
Q ss_pred Eec
Q 041325 416 VVD 418 (450)
Q Consensus 416 ~~~ 418 (450)
++|
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.6e-08 Score=86.31 Aligned_cols=200 Identities=10% Similarity=0.052 Sum_probs=117.4
Q ss_pred CCCceEEEEEccCCCEEEEEeC-----CCcEEEEecCCCeEEEEeecc-----cccceEEEEEeecCCcEEEEEc---CC
Q 041325 209 HVDTVSALALSSDGSLLYSTSW-----DRTFKIWRTSDFRCLESVKNA-----HDDAINAIVVSKSNDGFVYTGS---AD 275 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~---~d 275 (450)
+...+..++++++++++++-.. ++.|.+||+.+++.+..+... +...+..+++.+.+...+++.. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 5568999999999886665443 578999999999877766521 1235689999874444455555 67
Q ss_pred CcEEEEeCcchhhhccccc--hh-----hhhHhh--------------cccceEEEEEcCCCCEEEEeeCCC-cEEEEEc
Q 041325 276 TKIKVWKKLRAALQVNKKH--SL-----VQTLEK--------------HKSAVTALALSTDGTVLYSGACDR-SILVWER 333 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~--~~-----~~~~~~--------------~~~~i~~l~~~~~~~~l~~g~~dg-~i~vwd~ 333 (450)
+.|.+||+.+++....... .. .....+ ....+..|+|+|+++.|+.+..++ .|..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 8999999876542110000 00 000000 012468899999999888887766 5555543
Q ss_pred CCCceeeeCCCCCCceeeec--cccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc
Q 041325 334 DQGNYIVDGDDDSGHMVLKG--ALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP 409 (450)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 409 (450)
..... .......... ...++......++++ ++++++...++.|.+||..++. ...+... .+...
T Consensus 225 ~~~~~-----~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~------~~~~~~~-~~~~~ 292 (343)
T 2qe8_A 225 ADLSN-----LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA------YKLLVTD-EKLSW 292 (343)
T ss_dssp HHHTC-----TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE------EEEEEEC-GGGSC
T ss_pred HHhcC-----CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC------EEEEEEC-Cceec
Confidence 21000 0000000000 011222344556676 5577888888999999984330 1122211 12456
Q ss_pred eEEEEEEecCC
Q 041325 410 VKCLTAVVDSD 420 (450)
Q Consensus 410 v~~l~~~~~~~ 420 (450)
+.+++|.+++.
T Consensus 293 p~~va~~~~g~ 303 (343)
T 2qe8_A 293 TDSFNFGSDGY 303 (343)
T ss_dssp EEEEEECTTSC
T ss_pred CCeeEECCCCc
Confidence 88999998887
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=95.95 Aligned_cols=255 Identities=16% Similarity=0.151 Sum_probs=148.4
Q ss_pred EEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCC
Q 041325 80 SLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNN 157 (450)
Q Consensus 80 ~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~ 157 (450)
+... .+..|+.++.++.|..|| .+++...... .+...+.++...++. ++.++.+ |..+|. ++
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~------------~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g 87 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFK------------SGEIIECRPSIGKDGTIYFGSDK--VYAINP-DG 87 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSC------------GGGEEEECCEETTTTEECCSSCE--EEEECC-CG
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEe------------cCCCcccceEEecCCcEEEecCc--EEEECC-CC
Confidence 3445 366777888889999999 7777544311 122344566665444 6666555 777775 33
Q ss_pred ceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 041325 158 TSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIW 237 (450)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 237 (450)
+. +..... .........+. +..+..++.++.|..+
T Consensus 88 ~~----------------~~~~~~---------------------------~~~~~~~~~~~--~~~l~v~t~~~~l~~~ 122 (330)
T 3hxj_A 88 TE----------------KWRFDT---------------------------KKAIVSDFTIF--EDILYVTSMDGHLYAI 122 (330)
T ss_dssp GG----------------GGGSCC--------------------------------CCEEEE--TTEEEEECTTSEEEEE
T ss_pred cE----------------EEEEEC---------------------------CCCcccCceEE--CCEEEEEecCCEEEEE
Confidence 11 001100 00011111222 4567778889999999
Q ss_pred ecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 238 RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 238 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
|.. ++...... .....+.++... .++.++.++.++.|..+|.. ++ ....+......+.++...+++.
T Consensus 123 d~~-g~~~~~~~-~~~~~~~~~~~~--~~g~l~vgt~~~~l~~~d~~-g~--------~~~~~~~~~~~~~~~~~d~~g~ 189 (330)
T 3hxj_A 123 NTD-GTEKWRFK-TKKAIYATPIVS--EDGTIYVGSNDNYLYAINPD-GT--------EKWRFKTNDAITSAASIGKDGT 189 (330)
T ss_dssp CTT-SCEEEEEE-CSSCCCSCCEEC--TTSCEEEECTTSEEEEECTT-SC--------EEEEEECSSCCCSCCEECTTCC
T ss_pred cCC-CCEEEEEc-CCCceeeeeEEc--CCCEEEEEcCCCEEEEECCC-CC--------EeEEEecCCCceeeeEEcCCCE
Confidence 998 77666655 334445555555 35567888888999999986 43 1112222334566777777777
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCC
Q 041325 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 318 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~ 396 (450)
+.+ ++ +.|..+| .+++... ........+.++..+++ .|..++.++.|..+|...
T Consensus 190 l~v-~t--~~l~~~d-~~g~~~~-------------~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g-------- 244 (330)
T 3hxj_A 190 IYF-GS--DKVYAIN-PDGTEKW-------------NFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG-------- 244 (330)
T ss_dssp EEE-ES--SSEEEEC-TTSCEEE-------------EECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTS--------
T ss_pred EEE-Ee--CEEEEEC-CCCcEEE-------------EEccCCcceeceEECCCCeEEEEcCCCeEEEECCCC--------
Confidence 554 44 7899999 6665442 11222345667777755 788888888888887532
Q ss_pred ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 397 YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 397 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
..+..+......+..+...+++. |..++.+|.|..+|
T Consensus 245 -~~~~~~~~~~~~~~~~~~~~~g~--------------l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 -TEKWRFKTGKRIESSPVIGNTDT--------------IYFGSYDGHLYAIN 281 (330)
T ss_dssp -CEEEEEECSSCCCSCCEECTTSC--------------EEEECTTCEEEEEC
T ss_pred -CEeEEeeCCCCccccceEcCCCe--------------EEEecCCCCEEEEC
Confidence 22333333333334444443443 66666777777665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-11 Score=109.20 Aligned_cols=188 Identities=13% Similarity=0.131 Sum_probs=98.4
Q ss_pred EEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCce
Q 041325 82 AIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 82 ~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~ 159 (450)
+.++..+++++.||.|+.||..+++....... +.+.+..+..+. +++++.||.|+.||.++++.
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 34789999999999999999999998766332 122222222223 66678999999999987743
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
... ...... .. ....++ +. .+..+++++.|+.|..||.
T Consensus 72 ~w~----------------~~~~~~--------------------~~-~~~sp~----~~-~~~~v~~g~~dg~v~a~D~ 109 (369)
T 2hz6_A 72 LTK----------------LPFTIP--------------------EL-VQASPC----RS-SDGILYMGKKQDIWYVIDL 109 (369)
T ss_dssp SEE----------------CSCCHH--------------------HH-HTTCSC----C------CCCCEEEEEEEEECC
T ss_pred eee----------------eeccCc--------------------cc-cccCce----Ee-cCCEEEEEeCCCEEEEEEC
Confidence 211 100000 00 001111 11 2446777888999999999
Q ss_pred CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC---
Q 041325 240 SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG--- 316 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--- 316 (450)
.+|+.+..+.. +. ...++| .++.+++++.|+.|+.||.++++ .+..+... .....++..+.
T Consensus 110 ~tG~~~w~~~~-~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~--------~~W~~~~~--~~~~~~~~~~~~~~ 173 (369)
T 2hz6_A 110 LTGEKQQTLSS-AF----ADSLSP-STSLLYLGRTEYTITMYDTKTRE--------LRWNATYF--DYAASLPEDDVDYK 173 (369)
T ss_dssp C----------------------------EEEEEEEEEEECCCSSSSS--------CCCEEEEE--EECCBCCCCCTTCC
T ss_pred CCCcEEEEecC-CC----cccccc-cCCEEEEEecCCEEEEEECCCCC--------EEEeEecc--cccCccccCCcccc
Confidence 99998877762 22 133455 45588888999999999998876 22111111 11222333322
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeee
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
..+++++.||.|+.||..+++.+..
T Consensus 174 ~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 174 MSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp CCEEEEETSCEEEEECTTTCCEEEE
T ss_pred ceEEEECCCCEEEEEECCCCcEEEE
Confidence 5677888999999999999987654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-08 Score=90.07 Aligned_cols=265 Identities=11% Similarity=0.001 Sum_probs=151.4
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CCCeEEEEEcCCCceeEEe
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iw~~~~~~~~~~~ 163 (450)
.|.+.|..+++.+.... .+. .+ .+.+++++ ++.+. .++.|.+||..+.+..
T Consensus 47 ~vsvID~~t~~v~~~i~-----------vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv--- 109 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL-----------GAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI--- 109 (368)
T ss_dssp EEEEEETTTTEEEEEEE-----------ECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---
T ss_pred eEEEEECCCCeEEEEEe-----------CCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---
Confidence 78899999988776622 233 34 79999887 66654 3789999999998432
Q ss_pred ccCcccccceeeeeeccCCC-cceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC--CCcEEE--Ee
Q 041325 164 TSGKLKNKYYERIATLPTLN-DRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW--DRTFKI--WR 238 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd 238 (450)
..++... .++ ........++++|||++++++.. +..+.+ +|
T Consensus 110 -------------~~I~v~~~~~~---------------------~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD 155 (368)
T 1mda_H 110 -------------ADIELPDAPRF---------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155 (368)
T ss_dssp -------------EEEEETTSCSC---------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred -------------EEEECCCcccc---------------------ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEc
Confidence 2222110 000 00113457899999999998874 467888 99
Q ss_pred cCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-----hhhhccccchhhhhHhhcccceEEEEEc
Q 041325 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-----AALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
..+ +..+... +. +...|.+...+++.+.||.+.+.|+.+ ++...... ..+.....+. . .
T Consensus 156 ~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t----~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 156 ASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT----GAQNCSSQAA---Q-A 219 (368)
T ss_dssp TEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC----TTSCBCSCCE---E-E
T ss_pred hhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee----eeeeCCCCcc---c-c
Confidence 877 4444411 11 223454555677778899998999875 33110000 1111122333 3 5
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCce--eeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeC---------CCeEE
Q 041325 314 TDGTVLYSGACDRSILVWERDQGNY--IVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS---------DNTIR 382 (450)
Q Consensus 314 ~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~---------dg~v~ 382 (450)
+++..++..+. +.|.+.|+..... +......... ...............+..+++.++.+.. ++.+.
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~-~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG-RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH-HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc-ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 66666666666 9999999875321 1000000000 0000000011111233333455554432 23566
Q ss_pred EeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEeC
Q 041325 383 IWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQIR 450 (450)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l~ 450 (450)
++|+.+. +.+..+.... ....++|++|++. ++++.. .++.|.++|++
T Consensus 298 ViD~~t~--------~vv~~i~vg~-~p~gi~~s~Dg~~------------l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 298 SVTASVG--------QTSGPISNGH-DSDAIIAAQDGAS------------DNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEESSSC--------CEEECCEEEE-EECEEEECCSSSC------------EEEEEETTTTEEEEEESS
T ss_pred EEECCCC--------eEEEEEECCC-CcceEEECCCCCE------------EEEEccCCCCeEEEEECC
Confidence 9999874 4555554332 5889999999974 566666 59999999974
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-07 Score=82.67 Aligned_cols=235 Identities=12% Similarity=0.170 Sum_probs=139.9
Q ss_pred eeeeEEeecCCCcceEEEEE--eCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
..+..+. .+........| +++ +++++..++.|..|+.. ++.. . +..+...+..+++.+++
T Consensus 35 ~~~~~l~--~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~-~------------~~~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 35 ARLLTLY--DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD-V------------LLDATAFTNGNAVDAQQR 98 (305)
T ss_dssp CCCEEEE--CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE-E------------EEESCSCEEEEEECTTSC
T ss_pred CceEEEe--cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE-E------------EeCCCCccceeeECCCCC
Confidence 3455555 66677888888 577 67788888999999873 4422 1 23455678999999777
Q ss_pred EEEEeC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 LFSAHQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
++++.. ++.|.+|+.+ +....... ... ......++++++
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~-------------~~~--------------------------~~~~~~~~~i~~ 138 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVG-------------RYA--------------------------GKRLNSPNDLIV 138 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEC-------------EET--------------------------TEECSCCCCEEE
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEe-------------ccC--------------------------CCccCCCCCEEE
Confidence 666654 5789999876 32110000 000 001234678999
Q ss_pred ccCCCEEEE----EeC-------------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------
Q 041325 219 SSDGSLLYS----TSW-------------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------ 275 (450)
Q Consensus 219 ~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 275 (450)
+++|+++++ |.. .+.|..||..+++..... .....+.++|+|++. .|+.+...
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~~spdg~-~lyv~~~~~~~~~~ 214 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGS 214 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEEECTTSS-EEEEEECCC---CC
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceEEcCCCC-EEEEEecCCcCCCC
Confidence 999998876 332 256777887666543322 234567899998655 44444433
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
+.|.+|++...... ........ .......++++++|++ .+++.+| |.+|+.. ++.+ ..+
T Consensus 215 ~~i~~~~~~~~~l~---~~~~~~~~--~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~-g~~~-------------~~~ 273 (305)
T 3dr2_A 215 VEITAFAWRDGALH---DRRHFASV--PDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD-GQLL-------------GHI 273 (305)
T ss_dssp CEEEEEEEETTEEE---EEEEEECC--SSSCCCSEEECTTSCE-EECCSSE-EEEECTT-SCEE-------------EEE
T ss_pred CEEEEEEecCCCcc---CCeEEEEC--CCCCCCeEEECCCCCE-EEecCCc-EEEECCC-CCEE-------------EEE
Confidence 78999997643200 00011111 2234567899999994 4444444 9999984 4433 122
Q ss_pred cCCccceEEEEEe--CCeEEEEeCCCe
Q 041325 356 RGHTKAILCLAVV--SNLLFSGSSDNT 380 (450)
Q Consensus 356 ~~~~~~v~~~~~~--~~~l~s~~~dg~ 380 (450)
..+. .+.+++|. ++.|+.++.++.
T Consensus 274 ~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 274 PTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred ECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 2222 46778885 446776666543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-08 Score=97.38 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=121.3
Q ss_pred CCCceEEEEEccCCCEEEEE-----eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--------
Q 041325 209 HVDTVSALALSSDGSLLYST-----SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-------- 275 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------- 275 (450)
|...+..++|+|||++|+-+ +....|++||+.+++.+.... .......++|+ +++. |+.+..+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~-l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEG-FFYSSYDKPDGSELS 202 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTE-EEEEESSCCC-----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCE-EEEEEecCccccccc
Confidence 45578889999999988843 333579999999998655322 12224677899 6664 4444444
Q ss_pred -----CcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeC----CCcEEEEEcCCCceeeeCCCC
Q 041325 276 -----TKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGAC----DRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 276 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~ 345 (450)
..|++|++.+.. .....+..... +...+..+.|+|||++|+.... ++.|+++|+.++...
T Consensus 203 ~~~~~~~v~~~~lgt~~----~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~------ 272 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQ----EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP------ 272 (693)
T ss_dssp --CCCCEEEEEETTSCG----GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC------
T ss_pred ccCCCcEEEEEECCCCc----ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc------
Confidence 348999986654 11123333333 4455788999999998865432 358999998765310
Q ss_pred CCceeeeccccCCccceEE-EEEeCCe-EEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 346 SGHMVLKGALRGHTKAILC-LAVVSNL-LFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~-~~~~~~~-l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
...+..+...... +...++. ++....+ +.|..+|+.++. ......+..|...+. .|+++++
T Consensus 273 ------~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~------~~~~~~l~~~~~~~~--~~s~~g~ 338 (693)
T 3iuj_A 273 ------LLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG------PAHWRDLIPERQQVL--TVHSGSG 338 (693)
T ss_dssp ------CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC------GGGCEEEECCCSSCE--EEEEETT
T ss_pred ------eEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC------ccccEEEecCCCCEE--EEEEECC
Confidence 0122223333333 3444554 4444443 679999988641 111234455655555 8999988
Q ss_pred CCCCCCCCCCceEEEEEcc-cCC--cEEEEEe
Q 041325 421 YSNRNSDHSSTSFLVYSGS-LDC--EIKIWQI 449 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~-~Dg--~i~iw~l 449 (450)
.|+... .|+ .|++|++
T Consensus 339 -------------~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 339 -------------YLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp -------------EEEEEEEETTEEEEEEECT
T ss_pred -------------EEEEEEEECCeeEEEEEEC
Confidence 555544 454 5777765
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-07 Score=74.10 Aligned_cols=210 Identities=10% Similarity=0.097 Sum_probs=130.4
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
...+.|...+.+.++++. +.-......|.|+ +.++.+.+.+|.|+++|+++++..... . .....-.
T Consensus 33 ~~~~~~~~~~~~Vv~~~p-hd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-----------~~~~Fge 99 (268)
T 3nok_A 33 GSVQEPVRRVAHIIREYP-HATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-----------LGNIFAE 99 (268)
T ss_dssp --CCCCEEEEEEEEEEEE-CCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-----------CTTCCEE
T ss_pred CcccCccccceEEEEEEc-CCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-----------CCCccee
Confidence 333455555567777774 2233445789995 455566777889999999999977763 1 1111223
Q ss_pred EEEEeCCeEEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 132 SLVVLGDKLFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 132 ~l~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
.+++.++.|+. .-.++.+.+||.++.+ .+..++..
T Consensus 100 Git~~g~~Ly~ltw~~~~v~V~D~~Tl~----------------~~~ti~~~---------------------------- 135 (268)
T 3nok_A 100 GLASDGERLYQLTWTEGLLFTWSGMPPQ----------------RERTTRYS---------------------------- 135 (268)
T ss_dssp EEEECSSCEEEEESSSCEEEEEETTTTE----------------EEEEEECS----------------------------
T ss_pred EEEEeCCEEEEEEccCCEEEEEECCcCc----------------EEEEEeCC----------------------------
Confidence 46666777444 4458899999999883 33333211
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc-c---cceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH-D---DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
..-..++ ++++.|+.+..++.|.++|..+.+.+..+.... . ..++.+.|. +..+.+..-.++.|.+.|.+++
T Consensus 136 ~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 136 GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATG 211 (268)
T ss_dssp SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTC
T ss_pred CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 1112333 457777777779999999999999888876321 1 245677877 4445555557889999999888
Q ss_pred hhhccccchhhhh-H----hhcccceEEEEEcCCCCEEEEee
Q 041325 287 ALQVNKKHSLVQT-L----EKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 287 ~~~~~~~~~~~~~-~----~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
+.........+.. . .....-.+.||++|+++.|++.+
T Consensus 212 ~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 212 TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 7432222221111 1 11224678999999766555543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.5e-07 Score=77.36 Aligned_cols=197 Identities=9% Similarity=0.033 Sum_probs=128.0
Q ss_pred eEEEEEccCCCEEEEEeC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 213 VSALALSSDGSLLYSTSW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
...++|++++.++++.+. ++.|+++|+.+++.+..+..........+++. ++.+.++.-.++.+.++|..+.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--- 97 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--- 97 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE---
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc---
Confidence 579999998755555443 68999999999999988763332233455665 56567777789999999987665
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
.+..+...... ...+++||+.++++..++.|.++|..+.+.+....- ..-...-..+..+.|.+.
T Consensus 98 -----v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V--------g~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 98 -----NIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV--------KYNGHRVIRLNELEYING 162 (266)
T ss_dssp -----EEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC--------EETTEECCCEEEEEEETT
T ss_pred -----EEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE--------CCCCcccccceeEEEECC
Confidence 33333211011 233555788777777889999999998765421100 000001113456666655
Q ss_pred eEE-EEeCCCeEEEeeCCCCccccCCCceeEEEecCC-------------CcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 371 LLF-SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-------------RRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 371 ~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
.+. ....++.|.+.|..++ +.+..+.-. ....+.|+|+|+++. +++
T Consensus 163 ~lyvn~~~~~~V~vID~~tg--------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~------------lfV 222 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDG--------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR------------IFV 222 (266)
T ss_dssp EEEEEETTSSEEEEEETTTC--------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE------------EEE
T ss_pred EEEEecCCCCeEEEEECCCC--------cEEEEEECCCcccccccccccccCceEEEEEcCCCCE------------EEE
Confidence 444 4445789999999885 444444321 124689999999874 778
Q ss_pred EcccCCcEEEEEe
Q 041325 437 SGSLDCEIKIWQI 449 (450)
Q Consensus 437 s~~~Dg~i~iw~l 449 (450)
++...+.|..-++
T Consensus 223 Tgk~~~~v~~i~l 235 (266)
T 2iwa_A 223 TGKLWPKLFEIKL 235 (266)
T ss_dssp EETTCSEEEEEEE
T ss_pred ECCCCCeEEEEEE
Confidence 8878888877665
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-07 Score=83.41 Aligned_cols=252 Identities=13% Similarity=0.096 Sum_probs=143.0
Q ss_pred cceEEEEE--eCCEEEEee--CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeC-----
Q 041325 76 SYIPSLAI--AGKLLYGGS--SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQ----- 145 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~----- 145 (450)
.....+++ +|+++++.. .++.++||.+.+++.... .... . ...+|...+..+++.++. |+.+..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~-p~~~--~---~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPF-PPQS--G---NAIITFDTVLGIKSDGNGIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEES-CCCC--S---SCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecC-CCcc--c---CcccceeEeeEEEEcCCCcEEEEcCCCCcC
Confidence 67889999 688888864 235366666654432211 0000 0 022466789999999866 665543
Q ss_pred -CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 146 -DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 146 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
++.|.+||+.+++.. ..+..... ...+...+..+++++++..
T Consensus 91 ~~~~i~~~d~~tg~~~----------------~~~~~~~~---------------------~~~~~~~~~~v~vd~~~g~ 133 (343)
T 2qe8_A 91 SVPKLVAWDTLNNQLS----------------RVIYLPPP---------------------ITLSNSFVNDLAVDLIHNF 133 (343)
T ss_dssp SCCEEEEEETTTTEEE----------------EEEECCTT---------------------TSCTTCCCCEEEEETTTTE
T ss_pred CCCeEEEEECCCCeEE----------------EEEECChh---------------------hcccccccceEEEecCCCE
Confidence 578999999887421 11110000 0012335688999986444
Q ss_pred E-EEEe---CCCcEEEEecCCCeEEEEeeccc-----------------------------ccceEEEEEeecCCcEEEE
Q 041325 225 L-YSTS---WDRTFKIWRTSDFRCLESVKNAH-----------------------------DDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 225 l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~~l~~ 271 (450)
+ ++-. .++.|.+||+.+++....+. .| ...++.|+++|++. .|+.
T Consensus 134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~ 211 (343)
T 2qe8_A 134 VYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYL 211 (343)
T ss_dssp EEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEE
T ss_pred EEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEE
Confidence 4 4444 57899999998877655442 11 02357899998554 5555
Q ss_pred EcCCCcEEEEeCcchhhhcc--ccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 272 GSADTKIKVWKKLRAALQVN--KKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
+..++. ++|.+........ ........+ .++......++++++|+++++...++.|.+||..+++..
T Consensus 212 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-------- 282 (343)
T 2qe8_A 212 SPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-------- 282 (343)
T ss_dssp EESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE--------
T ss_pred EeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE--------
Confidence 554442 4444432210000 000111111 123345678999999999999888999999998555422
Q ss_pred ceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEee
Q 041325 348 HMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWR 385 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd 385 (450)
.... ..+-....++++.+ .++++.+..+.+.+|.
T Consensus 283 ---~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 283 ---LLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---EEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ---EEEE-CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1111 11234567888864 3556655555554443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-06 Score=82.52 Aligned_cols=292 Identities=12% Similarity=0.140 Sum_probs=159.2
Q ss_pred EeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC-Cc-eEEEEEeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 83 IAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG-DA-VKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 83 ~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~-v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
..+..++.++.++.|..+|..+++.+............. ... .. -..+.+..+.++.++.|+.|..+|..+++..
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKAR---TSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccc---cccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEe
Confidence 357777778888999999999999877644322111000 000 00 1234455677889999999999999999876
Q ss_pred EEeccCccccc-c-------eeeeeeccCC-----CcceeEeeecCceEEEeecceee------------------e---
Q 041325 161 YYSTSGKLKNK-Y-------YERIATLPTL-----NDRFTKCFLANNYVQVRRHKKCT------------------W--- 206 (450)
Q Consensus 161 ~~~~~~~~~~~-~-------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------------------~--- 206 (450)
........... . ......+... .+....++....-..++...... +
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 55443211000 0 0000000000 01122222222111222111000 0
Q ss_pred -----ecCCCceEEEEEccCCCEEEEEeCCCc-------------------EEEEecCCCeEEEEeecc-cc-------c
Q 041325 207 -----VHHVDTVSALALSSDGSLLYSTSWDRT-------------------FKIWRTSDFRCLESVKNA-HD-------D 254 (450)
Q Consensus 207 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~-~~-------~ 254 (450)
..+......++++++..+++.+..++. |..+|..+++.+..++.. |. .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 001111234688888888888877663 999999999998888733 21 2
Q ss_pred ceEEEEEeecCC--cEEEEEcCCCcEEEEeCcchhhhccccchh--------------hh----hHhhc----------c
Q 041325 255 AINAIVVSKSND--GFVYTGSADTKIKVWKKLRAALQVNKKHSL--------------VQ----TLEKH----------K 304 (450)
Q Consensus 255 ~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------~~----~~~~~----------~ 304 (450)
+.....+..++. ..++.++.+|.++++|..+++......... +. .+.+. .
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~ 380 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence 222222222222 258899999999999998877321000000 00 00000 0
Q ss_pred cceEEEEEcCCCCEEEEee------------------------------------CCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 305 SAVTALALSTDGTVLYSGA------------------------------------CDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
..-..++++|+..+++... .+|.|..||+.+++.+....
T Consensus 381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~----- 455 (668)
T 1kv9_A 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP----- 455 (668)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-----
T ss_pred cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-----
Confidence 0011267788766665421 24789999999998663211
Q ss_pred eeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 349 MVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
.. ....-..+...+++++.++.||.++.||.+++
T Consensus 456 ------~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 456 ------YP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp ------ES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ------CC-CCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 10 11111234456789999999999999999986
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-06 Score=72.87 Aligned_cols=215 Identities=11% Similarity=0.098 Sum_probs=136.3
Q ss_pred ccceeeeEEeecCCC--cceEEEEEeC-CEEEEe-eC--CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEE
Q 041325 61 SEHQCSATLKVKGNS--SYIPSLAIAG-KLLYGG-SS--NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLV 134 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~--~~v~~~~~d~-~~l~tg-s~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 134 (450)
.+.+.++++. |. .....++|++ ..|+.+ +. ++.|++.|+.+++.+..... +.......++
T Consensus 7 ~~~~vv~~~p---~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-----------~~~~fgeGi~ 72 (266)
T 2iwa_A 7 YIVEVLNEFP---HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-----------DDSYFGEGLT 72 (266)
T ss_dssp EEEEEEEEEE---CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-----------CTTCCEEEEE
T ss_pred cCceEEEEEE---CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-----------CCCcceEEEE
Confidence 4567777775 44 3467899943 455544 33 57999999999997766321 1112334677
Q ss_pred EeCCeEEEE-eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 135 VLGDKLFSA-HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 135 ~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+.++.|+.+ -.++.+.++|..+.+ .+..++.. ...
T Consensus 73 ~~g~~lyv~t~~~~~v~viD~~t~~----------------v~~~i~~g---------------------------~~~- 108 (266)
T 2iwa_A 73 LLNEKLYQVVWLKNIGFIYDRRTLS----------------NIKNFTHQ---------------------------MKD- 108 (266)
T ss_dssp EETTEEEEEETTCSEEEEEETTTTE----------------EEEEEECC---------------------------SSS-
T ss_pred EeCCEEEEEEecCCEEEEEECCCCc----------------EEEEEECC---------------------------CCC-
Confidence 777775544 457899999999873 33333211 001
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccc----cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHD----DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
...++++++.++++..++.|.++|..+.+.+..+..... ..++.+.+. +..+++....++.|.+.|..+++..
T Consensus 109 -g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 109 -GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp -CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred -eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEE
Confidence 123455777777777789999999999998888763221 136778887 4445555556889999999887632
Q ss_pred ccccchhhh-h--Hh--hcccceEEEEEcCCCCE-EEEeeCCCcEEEEEcCCC
Q 041325 290 VNKKHSLVQ-T--LE--KHKSAVTALALSTDGTV-LYSGACDRSILVWERDQG 336 (450)
Q Consensus 290 ~~~~~~~~~-~--~~--~~~~~i~~l~~~~~~~~-l~~g~~dg~i~vwd~~~~ 336 (450)
..-...-.. . .. ........|+|+|+++. ++++...+.|.+.++...
T Consensus 186 ~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 186 GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 111111010 0 00 11245689999998865 455667888999988753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-05 Score=79.45 Aligned_cols=307 Identities=10% Similarity=0.178 Sum_probs=171.8
Q ss_pred eEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcC
Q 041325 78 IPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKID 155 (450)
Q Consensus 78 v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~ 155 (450)
|.++..| ...|..|+.++.|..|+..+++...... ..+...|.++....++ +..++.++-+..||..
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~-----------~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~ 243 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP-----------ILGTKQIQAILQQSPTRIWVATEGAGLFLINPK 243 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC---------------CCCEEEEEEEETTEEEEEEBSSCEEEEETT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC-----------CCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCC
Confidence 7888773 5566667776568899987766433210 1124578888876544 7777766558999988
Q ss_pred CCceeEEeccC----cccccceeeeeeccCCCcceeEeeecCceEEEeec-cee-eee--------cCCCceEEEEEccC
Q 041325 156 NNTSAYYSTSG----KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH-KKC-TWV--------HHVDTVSALALSSD 221 (450)
Q Consensus 156 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--------~~~~~v~~~~~~~~ 221 (450)
+.+...+.... ......+.++.. ..++.+.+... ++...+... ... .+. -....|.++...++
T Consensus 244 ~~~~~~~~~~~~~~~~l~~~~i~~i~~--d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 320 (795)
T 4a2l_A 244 TKEIKNYLHSPSNPKSISSNYIRSLAM--DSQNRLWIGTF-NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ 320 (795)
T ss_dssp TTEEEEECCCTTCTTSCSCSBEEEEEE--CTTSCEEEEES-SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT
T ss_pred CCeEEEeecCCCCccccCCCeEEEEEE--cCCCCEEEEeC-ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC
Confidence 76544333221 111112222221 12223322222 222222111 111 111 12357999999988
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeec-----ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKN-----AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
|. |..|+.++-|..|+..+......... .....|.++... .++.|..|+.++-|..||..++..........
T Consensus 321 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d--~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 321 GG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED--KDKNLWIGTNDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp SC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC--TTSCEEEEESSSCEEEECTTTCCEEEECCC--
T ss_pred cC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC--CCCCEEEEECCCCeEEEcCCCCcEEEEecCCC
Confidence 87 56677778899998765542221110 123458888776 45678888888889999976544211000000
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSG 375 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~ 375 (450)
..........|.++...+++++|..|+.++-|.+||..+++...-... ........|.++..+.+ .|..|
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~---------~~~l~~~~v~~i~~d~~g~lwig 468 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR---------NSQLVNENVYAILPDGEGNLWLG 468 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT---------TSCCSCSCEEEEEECSSSCEEEE
T ss_pred CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC---------CCCcCCCeeEEEEECCCCCEEEE
Confidence 000001235789999988888577788777799999987754311000 00123456888888743 56666
Q ss_pred eCCCeEEEeeCCCCccccCCCceeEEEec-------CCCcceEEEEEEecCC
Q 041325 376 SSDNTIRIWRRSSSVTDHQKGYSCLAVLE-------GHRRPVKCLTAVVDSD 420 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~ 420 (450)
+.+ .+.+||..++. ...+. -....|.++...+++.
T Consensus 469 t~~-Gl~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 469 TLS-ALVRFNPEQRS---------FTTIEKEKDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp ESS-CEEEEETTTTE---------EEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred ecC-ceeEEeCCCCe---------EEEccccccccccCCceEEEEEECCCCC
Confidence 664 58889877531 11111 1235688888777776
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=5.2e-06 Score=70.67 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=143.6
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEE-EEeCCCeEEEEEcCCCceeE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLF-SAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~-s~~~dg~i~iw~~~~~~~~~ 161 (450)
|.+|+.+.. +.|+.++++....... . ....+......+..+++.++ .|+ +-..++.|..++.+......
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~-~------~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 72 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKT-E------AKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT 72 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGG-G------CEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE
T ss_pred CcEEEEEcC-CeEEEEEecCcccccc-c------ceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE
Confidence 345555554 5788888776542110 0 00011111235678899864 344 44457889999987652100
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE-EEeCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 240 (450)
.. .........+++++++..++ +-...+.|.++++.
T Consensus 73 ----------------~~---------------------------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~ 109 (267)
T 1npe_A 73 ----------------II---------------------------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (267)
T ss_dssp ----------------EE---------------------------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ----------------EE---------------------------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence 00 01113568899999655554 44557889999987
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcC--CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCE
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA--DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTV 318 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 318 (450)
.... ..+..........+++.|.++.++++... .+.|..+++..... ..+. .........++++++++.
T Consensus 110 g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------~~~~--~~~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 110 GTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------RILA--QDNLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp SCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------EEEE--CTTCSCEEEEEEETTTTE
T ss_pred CCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------EEEE--ECCCCCCcEEEEcCCCCE
Confidence 4332 22221222467899999855544444433 46888888653220 0110 012245788999998776
Q ss_pred EEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe-CCCeEEEeeCCCCccccCCC
Q 041325 319 LYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS-SDNTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 319 l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~ 396 (450)
|+.+. ..+.|.++|........ . ... ......++..++.|+.+. .++.|..+|..++
T Consensus 181 lyv~d~~~~~I~~~~~~g~~~~~----------~---~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g------- 239 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQPGRRK----------V---LEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS------- 239 (267)
T ss_dssp EEEEETTTTEEEEEETTEEEEEE----------E---EEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTT-------
T ss_pred EEEEECCCCEEEEEecCCCceEE----------E---ecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCC-------
Confidence 65554 56789999987543210 1 111 122356667766555444 5689999998864
Q ss_pred ceeEEEecCCC-cceEEEEEEecCC
Q 041325 397 YSCLAVLEGHR-RPVKCLTAVVDSD 420 (450)
Q Consensus 397 ~~~~~~~~~h~-~~v~~l~~~~~~~ 420 (450)
+.+..+.... .....+++.|++.
T Consensus 240 -~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 240 -KEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp -EEEEEECCSSCCCCCCEEEECSCC
T ss_pred -CceEEEccccccccceeeecCccC
Confidence 4555554322 2467788877753
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.1e-06 Score=70.85 Aligned_cols=204 Identities=9% Similarity=0.082 Sum_probs=126.9
Q ss_pred ccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCC--cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNG--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
...+.++++. +.-......|.| ++.++.+.+.+| .|+++|+++++........ ....-..++..+
T Consensus 29 ~~~~vv~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-----------~~~FgeGit~~g 96 (262)
T 3nol_A 29 YDYQIVHSYP-HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-----------KRYFGEGISDWK 96 (262)
T ss_dssp EEEEEEEEEE-CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------TTCCEEEEEEET
T ss_pred cceEEEEEec-CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------CccceeEEEEeC
Confidence 3456677774 122234578888 555556666666 8999999999977763221 111224466677
Q ss_pred CeEEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 138 DKLFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 138 ~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
+.|+... .++.+.+||.++.+ .+..++.. . ...
T Consensus 97 ~~ly~ltw~~~~v~v~D~~t~~----------------~~~ti~~~----------------------------~--eG~ 130 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIRNLR----------------QVRSFNYD----------------------------G--EGW 130 (262)
T ss_dssp TEEEEEESSSSEEEEEETTTCC----------------EEEEEECS----------------------------S--CCC
T ss_pred CEEEEEEeeCCEEEEEECccCc----------------EEEEEECC----------------------------C--Cce
Confidence 7755544 58899999999883 33333211 0 112
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc-c---cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH-D---DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
.+.++++.|+.+..++.|.++|..+.+.+..+.... . ..++.+.+. +..+.+..-.++.|.+.|.++++.....
T Consensus 131 glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 131 GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 233567777776668889999999999888876321 1 335567776 4445555657889999999887733221
Q ss_pred cchhhhhH----hhcccceEEEEEcCCCCEEEEeeC
Q 041325 293 KHSLVQTL----EKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 293 ~~~~~~~~----~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
....+... .......+.|||+|+++.|++.+.
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 11111110 112345789999998887776653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.6e-05 Score=74.69 Aligned_cols=311 Identities=11% Similarity=0.138 Sum_probs=172.4
Q ss_pred CcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEE
Q 041325 75 SSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVW 152 (450)
Q Consensus 75 ~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw 152 (450)
...|.++.. ....|..|+.++-+.+||..+++............ .-....|.++...+++ |..|+.+ -|.+|
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~ 287 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPK-----SISSNYIRSLAMDSQNRLWIGTFN-DLNIY 287 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTT-----SCSCSBEEEEEECTTSCEEEEESS-CEEEE
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCcc-----ccCCCeEEEEEEcCCCCEEEEeCC-hhheE
Confidence 456888887 35566667655558999987766443311100000 0123578999888666 7778776 58889
Q ss_pred EcCCCceeEEeccC----cccccceeeeeeccCCCcceeEeeecCceEEEeec-ce-eeeec-------CCCceEEEEEc
Q 041325 153 KIDNNTSAYYSTSG----KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH-KK-CTWVH-------HVDTVSALALS 219 (450)
Q Consensus 153 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-------~~~~v~~~~~~ 219 (450)
+..+.......... ......+..+. ...++.+.+....++...+... .. ..+.. ....|.++...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIF--MDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEE--ECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEE--EeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 98776544332211 11111111111 1122222222222333222211 11 11111 23468999998
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeec-------ccccceEEEEEeecCCcE-EEEEcCCCcEEEEeCcchhhhcc
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-------AHDDAINAIVVSKSNDGF-VYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
++|. |..|+.++-|..||..+++....... .....|.++...+ ++. |..|+.++.|..||..+++....
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE--KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET--TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC--CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 8887 55678787899999887654433211 1235688888763 445 88888877899999876542110
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
. .. .-......|.++...++|++.+. +.+ -|.+||..+++........ .........|.++..+.+
T Consensus 443 ~---~~-~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 443 N---QR-NSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEK-------DGTPVVSKQITTLFRDSHK 509 (795)
T ss_dssp C---TT-TSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCT-------TCCBCCCCCEEEEEECTTC
T ss_pred e---cC-CCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccc-------cccccCCceEEEEEECCCC
Confidence 0 00 00023457899999888875554 444 4889998876543100000 000112356888888744
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEec-------CCCcceEEEEEEecCC
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE-------GHRRPVKCLTAVVDSD 420 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~ 420 (450)
.|..|+. +.|..||..++ .. .+. .....|.++...+++.
T Consensus 510 ~lWigt~-~Gl~~~~~~~~--------~~--~~~~~~~~~~l~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 510 RLWIGGE-EGLSVFKQEGL--------DI--QKASILPVSNVTKLFTNCIYEASNGI 555 (795)
T ss_dssp CEEEEES-SCEEEEEEETT--------EE--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred CEEEEeC-CceEEEeCCCC--------eE--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence 5666666 55888887653 11 111 2344688888777776
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-06 Score=79.38 Aligned_cols=261 Identities=9% Similarity=0.024 Sum_probs=151.6
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCccee
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANV 121 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 121 (450)
........+.+.+.++... ..+ .+++ |+++|+.+. .++.|.++|..+.+............
T Consensus 100 ~VsVID~~t~~vv~~I~vG--~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r--- 172 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGG--FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR--- 172 (426)
T ss_dssp EEEEEETTTTEEEEEEEEC--SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---
T ss_pred eEEEEECCCCEEEEEEECC--CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc---
Confidence 3344556778888888853 234 6777 888888775 46789999999998776532210000
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
.........+.+++|+ ++.+.. ++.|.+.|+.+.+.......... ....+.....+. ....++.+.
T Consensus 173 --~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-------~~~~p~g~~~~v-~~~~dG~~~ 242 (426)
T 3c75_H 173 --FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-------YHIFPASPTVFY-MNCRDGSLA 242 (426)
T ss_dssp --CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-------EEEEEEETTEEE-EEETTSSEE
T ss_pred --cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-------eeeccCCCcEEE-EEcCCCCEE
Confidence 0012245678888877 666653 68899999999865443322110 001111111111 112222111
Q ss_pred -Eeecc--e-----eeeecCCCce-EEEEEccCCCEEEEEeCCCcEEEEecCCCeEE--EEeecc---------cccceE
Q 041325 198 -VRRHK--K-----CTWVHHVDTV-SALALSSDGSLLYSTSWDRTFKIWRTSDFRCL--ESVKNA---------HDDAIN 257 (450)
Q Consensus 198 -~~~~~--~-----~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~---------~~~~v~ 257 (450)
+.... . ..+.-...++ ..+.+.+++..++.....+.|.+.|....... ..+... ......
T Consensus 243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 11100 0 0010011111 23467888888777778899999998654322 111100 112223
Q ss_pred EEEEeecCCcEEEEEc---------CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEee-CCC
Q 041325 258 AIVVSKSNDGFVYTGS---------ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGA-CDR 326 (450)
Q Consensus 258 ~~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~-~dg 326 (450)
.++++++++.++++.. .++.|.++|..+.+ .+..+.. ......++|+|||+ ++++.. .++
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--------vv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--------RINKIEL-GHEIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------EEEEEEE-EEEECEEEECCSSSCEEEEEETTTT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--------EEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCC
Confidence 4688886665444432 23579999997766 4444432 23578999999999 888887 589
Q ss_pred cEEEEEcCCCceee
Q 041325 327 SILVWERDQGNYIV 340 (450)
Q Consensus 327 ~i~vwd~~~~~~~~ 340 (450)
.|.++|+.+++.+.
T Consensus 394 ~VsVID~~t~kvv~ 407 (426)
T 3c75_H 394 TLHIYDAATGEELR 407 (426)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eEEEEECCCCCEEE
Confidence 99999999988663
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-05 Score=65.01 Aligned_cols=202 Identities=12% Similarity=0.133 Sum_probs=124.8
Q ss_pred cceeeeEEeecCCCcceEEEEEeCCEEE-EeeCC--CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 62 EHQCSATLKVKGNSSYIPSLAIAGKLLY-GGSSN--GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~d~~~l~-tgs~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
..+.++++. |.-......+.|++..|. +.+.+ ..|+++|+.+++......... ...--.++..++
T Consensus 8 ~~~v~~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-----------~~fgeGi~~~~~ 75 (243)
T 3mbr_X 8 GYRVVKRYP-HDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP-----------PYFGAGIVAWRD 75 (243)
T ss_dssp CEEEEEEEE-CCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----------TCCEEEEEEETT
T ss_pred ceEEEEEcC-CCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----------CcceeEEEEeCC
Confidence 446667763 233345778999655555 44554 489999999999877632211 112234566677
Q ss_pred eEEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 139 KLFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 139 ~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
.|+. .-.++.+.+||.++. +.+..++.. ..-..++
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl----------------~~~~ti~~~----------------------------~~Gwglt 111 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATL----------------TPRARFRYP----------------------------GEGWALT 111 (243)
T ss_dssp EEEEEESSSSEEEEEETTTT----------------EEEEEEECS----------------------------SCCCEEE
T ss_pred EEEEEEeeCCEEEEEECCcC----------------cEEEEEeCC----------------------------CCceEEe
Confidence 7444 456899999999988 333333311 1112333
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccc----cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHD----DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
+++..|+.+..++.|.++|..+.+.+..+..... ..++.+.+. +..+++..-.+..|.+.|.++++......
T Consensus 112 --~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 112 --SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp --ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred --eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 4566666666789999999999998888763211 345677776 45455555568899999998877432211
Q ss_pred chhhh-hH----hhcccceEEEEEcCCCCEEEEee
Q 041325 294 HSLVQ-TL----EKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 294 ~~~~~-~~----~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
...+. .. .....-.+.|+++|+++.|++.+
T Consensus 188 l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 188 LQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 11111 11 11234678999999877666554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-06 Score=70.25 Aligned_cols=177 Identities=10% Similarity=0.035 Sum_probs=113.2
Q ss_pred eEEEEEccCCCEEEEEeCCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 213 VSALALSSDGSLLYSTSWDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
...+.|+ ++.++.+.+.+| .|+.+|+.+++.+..+.......-..++.. ++.+.+..-.++.+.+||..+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~--- 118 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR--- 118 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC---
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc---
Confidence 4788998 677777777765 899999999999988863222222334544 66666677779999999997765
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc-cceEEEEEeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT-KAILCLAVVS 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~ 369 (450)
.+.++.... .-..++ +|++.|+....++.|.++|..+.+.+.... -...+.. ..++.+.|.+
T Consensus 119 -----~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~---------V~~~g~~~~~lNELe~~~ 181 (262)
T 3nol_A 119 -----QVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTIT---------VTAHGEELPELNELEWVD 181 (262)
T ss_dssp -----EEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEE---------CEETTEECCCEEEEEEET
T ss_pred -----EEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEE---------eccCCccccccceeEEEC
Confidence 444443221 113333 577777777778889999999877552110 0011111 2334566664
Q ss_pred CeEEEE-eCCCeEEEeeCCCCccccCCCceeEEEecCC------------CcceEEEEEEecCC
Q 041325 370 NLLFSG-SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH------------RRPVKCLTAVVDSD 420 (450)
Q Consensus 370 ~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~~~~~~ 420 (450)
..|.+. -.++.|.+.|.+++ +.+..+... ....+.|+|.|+.+
T Consensus 182 G~lyan~w~~~~I~vIDp~tG--------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETG--------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTC--------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred CEEEEEEccCCeEEEEECCCC--------cEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 444444 46888999999886 333333221 23568999999887
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.3e-06 Score=78.63 Aligned_cols=284 Identities=10% Similarity=0.038 Sum_probs=143.6
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE-EEEEeCCeEEEEeC------CCeEEEEE
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK-SLVVLGDKLFSAHQ------DHKIRVWK 153 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~~------dg~i~iw~ 153 (450)
+++++..++.++.|+.|..+|..+++........... ....+. ......+.++.++. ++.|..+|
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~--------~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D 182 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPK--------VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFD 182 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGG--------GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC--------ccceeccCCEEECCEEEEEecCCccCCCCEEEEEE
Confidence 4567888888999999999999999987664322100 000111 11123556666655 79999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC--
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD-- 231 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 231 (450)
.++++............... ..........+. -........+...... .+-......+++.++...++.+..+
T Consensus 183 ~~tG~~~W~~~~~~~~~~~~--~~p~~~~~~~~~--G~~~~g~~~w~~~~~~-~gg~~~w~~~a~d~~~g~vy~~~g~~~ 257 (571)
T 2ad6_A 183 LKTGELKWRAFATGSDDSVR--LAKDFNSANPHY--GQFGLGTKTWEGDAWK-IGGGTNWGWYAYDPKLNLFYYGSGNPA 257 (571)
T ss_dssp TTTCCEEEEEESSSCHHHHT--BCTTTTTTCGGG--CCSSHHHHTSSTTGGG-GCCCCCCSCCEEETTTTEEEEECCCCS
T ss_pred CCCCcEEEEEccCCCccccc--cCcccccccccc--cccccccccCccccee-cCCCCeeeeEEEcCCCCeEEEECCCCc
Confidence 99997654332211100000 000000000000 0000000000000000 0000011234566655556555432
Q ss_pred --------------CcEEEEecCCCeEEEEeeccccc-----ceEE---EEEeecCC--cEEEEEcCCCcEEEEeCcchh
Q 041325 232 --------------RTFKIWRTSDFRCLESVKNAHDD-----AINA---IVVSKSND--GFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 232 --------------g~i~iwd~~~~~~~~~~~~~~~~-----~v~~---~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~ 287 (450)
+.|..+|..+++.+..++..+.. .+.. +....++. ..++.++.+|.+.++|..+++
T Consensus 258 ~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 258 PWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 35999999999988877632210 1111 12112121 257788899999999998876
Q ss_pred hhccccchh-hh---hHh-hcccc--------------------------eEEEEEcCCCCEEEEee-------------
Q 041325 288 LQVNKKHSL-VQ---TLE-KHKSA--------------------------VTALALSTDGTVLYSGA------------- 323 (450)
Q Consensus 288 ~~~~~~~~~-~~---~~~-~~~~~--------------------------i~~l~~~~~~~~l~~g~------------- 323 (450)
..-...... .. .+. ....+ -..++++|+..++++..
T Consensus 338 ~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 417 (571)
T 2ad6_A 338 LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP 417 (571)
T ss_dssp EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC
T ss_pred EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc
Confidence 321110000 00 000 00000 02467888877777654
Q ss_pred ------------------------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCC
Q 041325 324 ------------------------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDN 379 (450)
Q Consensus 324 ------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 379 (450)
.+|.|..||..+++.+...... ..... ..+...+.+++.++.||
T Consensus 418 ~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---------~~~~~---~~~~t~gg~v~~g~~dg 485 (571)
T 2ad6_A 418 YRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---------FAAWG---GTLYTKGGLVWYATLDG 485 (571)
T ss_dssp CCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---------SCCCS---BCEEETTTEEEEECTTS
T ss_pred cccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---------CCccc---eeEEECCCEEEEEcCCC
Confidence 3478899999888765321110 00011 11233467888899999
Q ss_pred eEEEeeCCCC
Q 041325 380 TIRIWRRSSS 389 (450)
Q Consensus 380 ~v~iwd~~~~ 389 (450)
.|+.||.+++
T Consensus 486 ~l~a~D~~tG 495 (571)
T 2ad6_A 486 YLKALDNKDG 495 (571)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 9999999986
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.77 E-value=0.0001 Score=73.16 Aligned_cols=313 Identities=10% Similarity=0.045 Sum_probs=168.0
Q ss_pred cceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeee-------cCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCC
Q 041325 76 SYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITS-------TDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQD 146 (450)
Q Consensus 76 ~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d 146 (450)
..|.++..| ...|..|+..+-|.++|..+........ .... . ..-....|.++....++ |..|+.+
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~-~----~~l~~~~v~~i~~D~~g~lWigt~~ 332 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDN-N----YSLSNASARYIFQDSFNNIWIGTWG 332 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSS-T----TSBSSSCEEEEEECSSCCEEEEEBS
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCC-C----CCCCCCeEEEEEEeCCCCEEEEecC
Confidence 568888883 5567778775678889987766433211 0000 0 01234578999888666 8899888
Q ss_pred CeEEEEEcCCCceeEEecc------CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-------ecCCCce
Q 041325 147 HKIRVWKIDNNTSAYYSTS------GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-------VHHVDTV 213 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v 213 (450)
+-|..++........+... .......+..+.. ..++.+.+....++...+.. ....+ ......|
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~lWigt~~~Gl~~~~~-~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD--DGQGKLWIGTDGGGINVFEN-GKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE--CTTSCEEEEEBSSCEEEEET-TEEEEECC-----CCCSBE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE--cCCCCEEEEeCCCcEEEEEC-CCCeEEEccCCCCCCCcce
Confidence 8899999876654333211 1111111122211 11222322222233222221 11111 1234578
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
.++...+++.+ ..|+.++-|..+|..+++...... ......|.++... .++.+..|+. +.|..||..+++.....
T Consensus 410 ~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g~lwigt~-~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 410 LCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED--KNKKIWIGTH-AGVFVIDLASKKVIHHY 485 (781)
T ss_dssp EEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC--TTSEEEEEET-TEEEEEESSSSSCCEEE
T ss_pred EEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC--CCCCEEEEEC-CceEEEeCCCCeEEecc
Confidence 89988888764 457777779999988765433221 1134568887766 4556777776 55888987665421100
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-e
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-L 371 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 371 (450)
...........|.++...++|++.+ |+.++-|..||..+++... ...........|.++..+.+ .
T Consensus 486 ---~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~----------~~~~~~l~~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 486 ---DTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK----------FNQYEGFCSNTINQIYRSSKGQ 551 (781)
T ss_dssp ---CTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE----------ECTTTTCSCSCEEEEEECTTSC
T ss_pred ---cCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE----------ccCCCCCCCCeeEEEEECCCCC
Confidence 0000001146789999998887554 5554448888887654321 00011112456888888743 5
Q ss_pred EEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCC
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSD 420 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~ 420 (450)
|..|+.+|.|..||..++. ........+ ....|.++...+++.
T Consensus 552 lWi~T~~Glv~~~d~~~~~------~~~~~~~~gl~~~~i~~i~~d~~g~ 595 (781)
T 3v9f_A 552 MWLATGEGLVCFPSARNFD------YQVFQRKEGLPNTHIRAISEDKNGN 595 (781)
T ss_dssp EEEEETTEEEEESCTTTCC------CEEECGGGTCSCCCCCEEEECSSSC
T ss_pred EEEEECCCceEEECCCCCc------EEEccccCCCCCceEEEEEECCCCC
Confidence 6666667665889877531 111111111 123566777766665
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.70 E-value=5e-06 Score=74.21 Aligned_cols=206 Identities=11% Similarity=0.103 Sum_probs=120.4
Q ss_pred eCCEEE-EeeCCCcEEEecCCCC----CceeeeecCCCCcceeEEec-CCCceEEEEEeCCe-EEEEeCC------CeEE
Q 041325 84 AGKLLY-GGSSNGEIRAWNRDPN----NYVNITSTDVGDHANVVATG-NGDAVKSLVVLGDK-LFSAHQD------HKIR 150 (450)
Q Consensus 84 d~~~l~-tgs~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~-l~s~~~d------g~i~ 150 (450)
++++|+ +|..++.|.|.|+.+. +.........- ... ....-..+...|++ ++++..+ |.|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~------~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEV------KKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHH------HHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEE
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhc------ccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEE
Confidence 355555 5667899999998754 22222110000 000 01133445566776 3344333 6899
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS- 229 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 229 (450)
+.|.++.+. +...+... +-..--..+-|+|+++.+++..
T Consensus 168 vlD~~T~~v----------------~~~~~~~~------------------------~~~~~~Yd~~~~p~~~~mvsS~w 207 (462)
T 2ece_A 168 MLDHYSFEP----------------LGKWEIDR------------------------GDQYLAYDFWWNLPNEVLVSSEW 207 (462)
T ss_dssp EECTTTCCE----------------EEECCSBC------------------------TTCCCCCCEEEETTTTEEEECBC
T ss_pred EEECCCCeE----------------EEEEccCC------------------------CCccccceEEECCCCCEEEEccC
Confidence 999988733 22222110 0111233577899999888874
Q ss_pred ------------------CCCcEEEEecCCCeEEEEeecc-cccceEEEEE--eecCCcEEEEEc-----CCCcEEEEeC
Q 041325 230 ------------------WDRTFKIWRTSDFRCLESVKNA-HDDAINAIVV--SKSNDGFVYTGS-----ADTKIKVWKK 283 (450)
Q Consensus 230 ------------------~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~~l~~~~-----~dg~i~vwd~ 283 (450)
.+.+|.+||+.+++.+.++..+ .......+.| +|++...++++- .+++|.+|..
T Consensus 208 g~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 208 AVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp CCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred cCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 3689999999999888888743 2234556666 775554455555 6778887765
Q ss_pred cchhhhccccc-----hh---h----hhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCC
Q 041325 284 LRAALQVNKKH-----SL---V----QTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQ 335 (450)
Q Consensus 284 ~~~~~~~~~~~-----~~---~----~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~ 335 (450)
..+........ +. + ..+.+.......|.+++||++|+++.. .+.|.+||+..
T Consensus 288 d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 288 EDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp ETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 44321100000 00 0 111111345788999999999988776 67899999863
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.9e-06 Score=67.23 Aligned_cols=176 Identities=14% Similarity=0.022 Sum_probs=113.4
Q ss_pred ceEEEEEccCCCEEEEEeCC--CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 212 TVSALALSSDGSLLYSTSWD--RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
-...+.|+. +.++.+.+.+ ..|+.+|+.+++.+..+.......-..++.. ++.+....-.++.+.+||..+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~-- 96 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT-- 96 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--
Confidence 467899986 5566666654 4899999999999988863322222344444 66667777789999999997765
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc---cceEEEE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT---KAILCLA 366 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 366 (450)
.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+.+... ....+. ..++.+.
T Consensus 97 ------~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I-----------~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 97 ------PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSI-----------KVTAGGRPLDNLNELE 156 (243)
T ss_dssp ------EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEE-----------ECEETTEECCCEEEEE
T ss_pred ------EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEE-----------EEccCCcccccceeeE
Confidence 444443222 224444 46777777777899999999987755211 111111 2345667
Q ss_pred EeCCeEE-EEeCCCeEEEeeCCCCccccCCCceeEEEecC-------------CCcceEEEEEEecCC
Q 041325 367 VVSNLLF-SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-------------HRRPVKCLTAVVDSD 420 (450)
Q Consensus 367 ~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~ 420 (450)
+.+..|. ....+..|.+.|.+++ +.+..+.. -....+.|++.|+.+
T Consensus 157 ~~~G~lyanvw~s~~I~vIDp~tG--------~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 157 WVNGELLANVWLTSRIARIDPASG--------KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp EETTEEEEEETTTTEEEEECTTTC--------BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred EeCCEEEEEECCCCeEEEEECCCC--------CEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence 7655444 4446788999999886 33333321 123568999999877
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=0.00032 Score=69.64 Aligned_cols=312 Identities=8% Similarity=0.079 Sum_probs=169.1
Q ss_pred cceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 76 SYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 76 ~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
..|.++..| ...|..|+.++-|..||..+++.......... . ..-....|.++....++ |..|+.+ -+.+||
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~---~--~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d 236 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQN---P--NSLPGNDVRCIYKDTNGNIWIGTSK-GLALFN 236 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC-------------CCSSEEEEEECTTCCEEEEETT-EEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCC---c--ccCCCCceeEEEEcCCCCEEEEeCC-cHheEC
Confidence 457888874 66777787776688999877654332110000 0 00123568888887666 7777776 588999
Q ss_pred cCCCceeEEeccCcc-cccceeeeeeccC-CCcceeEeeecCceEEEeecce--eee---------------ecCCCceE
Q 041325 154 IDNNTSAYYSTSGKL-KNKYYERIATLPT-LNDRFTKCFLANNYVQVRRHKK--CTW---------------VHHVDTVS 214 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~v~ 214 (450)
..+.....+...... .......+..+.. .++.+.+....++...+..... ..+ .-....|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 237 ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR 316 (781)
T ss_dssp TTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred CCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence 877644322211100 0000011222211 2222222222133222211100 000 11345789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee--------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK--------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
++...++|. |..|+.++-|..++........... ......|.++... .++.|..|+.++-|..||..++
T Consensus 317 ~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d--~~g~lWigt~~~Gl~~~~~~~~ 393 (781)
T 3v9f_A 317 YIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD--GQGKLWIGTDGGGINVFENGKR 393 (781)
T ss_dssp EEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC--TTSCEEEEEBSSCEEEEETTEE
T ss_pred EEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc--CCCCEEEEeCCCcEEEEECCCC
Confidence 999988886 5667777888999987654322111 0123468888776 4557778887777999997654
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
..... ..........|.++...+++++ ..|+.++-|..+|..+++...- .........|.++.
T Consensus 394 ~~~~~-----~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~-----------~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 394 VAIYN-----KENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQII-----------ELEKNELLDVRVFY 456 (781)
T ss_dssp EEECC----------CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEEC-----------CSTTTCCCCEEEEE
T ss_pred eEEEc-----cCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEe-----------ccCCCCCCeEEEEE
Confidence 31110 0001123467899998877764 4467667799999877653310 00012345788888
Q ss_pred EeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEec---CCCcceEEEEEEecCC
Q 041325 367 VVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE---GHRRPVKCLTAVVDSD 420 (450)
Q Consensus 367 ~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~ 420 (450)
.+.+ .|..|+. +.|..||..++. ........ .....|.++...+++.
T Consensus 457 ~d~~g~lwigt~-~Gl~~~~~~~~~------~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 457 EDKNKKIWIGTH-AGVFVIDLASKK------VIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp ECTTSEEEEEET-TEEEEEESSSSS------CCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred ECCCCCEEEEEC-CceEEEeCCCCe------EEecccCcccccccceeEEEEEcCCCC
Confidence 8743 6666766 568889877531 11111111 1135688888777776
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.9e-05 Score=71.12 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=48.4
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.+..++.++.++.|..+|..+++.+............ ......-..+++.++.++.++.|+.|..+|.++++.....
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~---~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR---PCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC---CSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc---cccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 4555555555445999999999987764433211100 0000001233456777889999999999999999876554
Q ss_pred c
Q 041325 164 T 164 (450)
Q Consensus 164 ~ 164 (450)
.
T Consensus 144 ~ 144 (582)
T 1flg_A 144 K 144 (582)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.9e-05 Score=69.21 Aligned_cols=257 Identities=10% Similarity=0.026 Sum_probs=143.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcc----e---eEEecCCCceEEEEEeC-Ce-EE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA----N---VVATGNGDAVKSLVVLG-DK-LF 141 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~----~---~~~~~h~~~v~~l~~~~-~~-l~ 141 (450)
+.-....++++ ++++++++..++.|..|+..++.............. . .........+..+++.+ +. |+
T Consensus 16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 44345667777 577788888899999999877654332111000000 0 00000113578899985 44 77
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS- 220 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 220 (450)
.+...+.|..+|..++.... +..... . ........+++.+
T Consensus 96 v~d~~~~i~~~d~~~g~~~~--------------~~~~~~-~------------------------~~~~~p~~i~~d~~ 136 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQ--------------LATSVD-G------------------------VPFKWLYAVTVDQR 136 (322)
T ss_dssp EEETTTEEEEECTTCEECEE--------------EESEET-T------------------------EECSCEEEEEECTT
T ss_pred EEECCCCEEEEeCCCCEEEE--------------ecccCC-C------------------------CcccccceEEEecC
Confidence 77666668888766442110 000000 0 0112467889999
Q ss_pred CCCEEEEEeC-----------------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 221 DGSLLYSTSW-----------------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 221 ~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
+|++.++-.. ++.|..||..+++...... .....+.++++++++.++++-..++.|..|++
T Consensus 137 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~ 214 (322)
T 2fp8_A 137 TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWL 214 (322)
T ss_dssp TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEES
T ss_pred CCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 8886665432 3678889987776433322 23456778999755535555567789999998
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC----------CCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC----------DRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
...... ....... ..+ ...+++.++|++.++... .+.|..+|.. ++.+..+..+
T Consensus 215 ~~~~~~---~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~-------- 278 (322)
T 2fp8_A 215 EGPKKG---TAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP-------- 278 (322)
T ss_dssp SSTTTT---CEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC--------
T ss_pred CCCcCC---ccceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC--------
Confidence 653210 0001111 123 678999999987666544 4668888864 5443211111
Q ss_pred cccCC-ccceEEEEEeCC-eEEEEeCCCeEEEeeCCC
Q 041325 354 ALRGH-TKAILCLAVVSN-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 354 ~~~~~-~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~ 388 (450)
.+. -..++++.+.+. +.++...++.|..+++..
T Consensus 279 --~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 279 --PPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp --TTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred --CCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 010 233455556555 445555678898888764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=8.9e-06 Score=77.07 Aligned_cols=212 Identities=12% Similarity=0.064 Sum_probs=116.9
Q ss_pred eCCEEEEeeC-CCcEEEecC-CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeE
Q 041325 84 AGKLLYGGSS-NGEIRAWNR-DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 84 d~~~l~tgs~-dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
.+..++.++. ++.|..+|. .+++.+............... .....-..++..++.++.++.|+.|..+|..+++...
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVM-CCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGC-TTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccc-cccccccccEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4666666666 899999999 899987664332211000000 0000012234567778999999999999999985533
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC------CCcEE
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW------DRTFK 235 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~ 235 (450)
......... .......++ + .++ .+++++. ++.|.
T Consensus 140 ~~~~~~~~~----------------------------------~~~~~~~P~--v---~~g-~v~vg~~~~~~~~~g~v~ 179 (571)
T 2ad6_A 140 EVEVCDPKV----------------------------------GSTLTQAPF--V---AKD-TVLMGCSGAELGVRGAVN 179 (571)
T ss_dssp EEECCCGGG----------------------------------TCBCCSCCE--E---ETT-EEEEECBCGGGTCCCEEE
T ss_pred EecCCCCCc----------------------------------cceeccCCE--E---ECC-EEEEEecCCccCCCCEEE
Confidence 221110000 000001111 1 133 4555544 78999
Q ss_pred EEecCCCeEEEEeeccccc-------------------------------------ceEEEEEeecCCcEEEEEcCC---
Q 041325 236 IWRTSDFRCLESVKNAHDD-------------------------------------AINAIVVSKSNDGFVYTGSAD--- 275 (450)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~-------------------------------------~v~~~~~~~~~~~~l~~~~~d--- 275 (450)
.+|..+++.+..+...... ....+++.+. .+.++.+..+
T Consensus 180 a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~-~g~vy~~~g~~~~ 258 (571)
T 2ad6_A 180 AFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LNLFYYGSGNPAP 258 (571)
T ss_dssp EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSC
T ss_pred EEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC-CCeEEEECCCCcc
Confidence 9999999988877522110 0012455553 3455555432
Q ss_pred -------------CcEEEEeCcchhhhccccchhhhh------HhhcccceEEEEEcCCCC---EEEEeeCCCcEEEEEc
Q 041325 276 -------------TKIKVWKKLRAALQVNKKHSLVQT------LEKHKSAVTALALSTDGT---VLYSGACDRSILVWER 333 (450)
Q Consensus 276 -------------g~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~i~~l~~~~~~~---~l~~g~~dg~i~vwd~ 333 (450)
+.|..+|.++++.. +..... +.....++. +....+|+ .++.++.+|.++++|.
T Consensus 259 ~~~~~~~gd~~y~~~v~Ald~~tG~~~----W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~ 333 (571)
T 2ad6_A 259 WNETMRPGDNKWTMTIWGRDLDTGMAK----WGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNR 333 (571)
T ss_dssp SCGGGSCSCCTTTTEEEEEETTTCCEE----EEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred ccCCccCCCceeEEEEEEEecCCCcEE----EEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEEC
Confidence 35888998887621 111000 001112221 23334674 6778899999999999
Q ss_pred CCCceeeeC
Q 041325 334 DQGNYIVDG 342 (450)
Q Consensus 334 ~~~~~~~~~ 342 (450)
.+++.+...
T Consensus 334 ~tG~~~w~~ 342 (571)
T 2ad6_A 334 ENGNLIVAE 342 (571)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEeee
Confidence 999987654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-06 Score=68.70 Aligned_cols=175 Identities=9% Similarity=0.053 Sum_probs=114.6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
...+.|+ ++.++.+.+.+|.|+.+|+++++.+..+ .........+++. ++.+.+..-.++.+.+||..+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~----- 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ----- 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE-----
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc-----
Confidence 4788887 4667777788899999999999988877 2332222335554 56677777789999999997766
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc---cceEEEEEeC
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT---KAILCLAVVS 369 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~ 369 (450)
.+.++... ..-..++ +|++.|+.+..++.|+++|..+.+.+... ....+. ..++.+.|..
T Consensus 128 ---~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I-----------~V~~~g~~v~~lNeLe~~d 190 (268)
T 3nok_A 128 ---RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAV-----------QVKLRGQPVELINELECAN 190 (268)
T ss_dssp ---EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEE-----------ECEETTEECCCEEEEEEET
T ss_pred ---EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEE-----------EeCCCCcccccccccEEeC
Confidence 34444322 2223444 46888888878999999999987755211 111111 2345667764
Q ss_pred CeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEecC-------------CCcceEEEEEEecCCC
Q 041325 370 NLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEG-------------HRRPVKCLTAVVDSDY 421 (450)
Q Consensus 370 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~~ 421 (450)
..|.+.. .++.|.+.|.+++ +.+..+.- -....+.|++.|+.+.
T Consensus 191 G~lyanvw~s~~I~vIDp~TG--------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATG--------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTC--------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred CEEEEEECCCCeEEEEeCCCC--------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 4444444 6788999999886 33333321 1235689999998773
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-05 Score=70.60 Aligned_cols=193 Identities=10% Similarity=0.101 Sum_probs=112.6
Q ss_pred eEEEEEccCCCEEEEEeCC------CcEEEEecCCCeEEEEeecccc--cceEEEEEeecCCcEEEEEc-----------
Q 041325 213 VSALALSSDGSLLYSTSWD------RTFKIWRTSDFRCLESVKNAHD--DAINAIVVSKSNDGFVYTGS----------- 273 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~----------- 273 (450)
-..+...|+| +++++..+ |.|.++|.++++.+..+..... ..-..+.|+|..+ .+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCcccccccc
Confidence 4557778998 66666555 7899999999999998863211 2234577888555 666663
Q ss_pred --------CCCcEEEEeCcchhhhccccchhhhhHhh--cccceEEEEE--cCCCCEEEEeeC------CCcEEEEEcCC
Q 041325 274 --------ADTKIKVWKKLRAALQVNKKHSLVQTLEK--HKSAVTALAL--STDGTVLYSGAC------DRSILVWERDQ 335 (450)
Q Consensus 274 --------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~--~~~~~~l~~g~~------dg~i~vwd~~~ 335 (450)
....|.+||+.+++ .+..+.. .......+.| +|+++++++++. +++|.+|....
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k--------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRK--------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTE--------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred chhhhhhccCCEEEEEECCCCc--------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 47899999997654 3333322 1133455656 999999888774 56888877665
Q ss_pred Cceee----eCCCCCCceeee---ccccCCccceEEEEEe--CCeEEEE-eCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 336 GNYIV----DGDDDSGHMVLK---GALRGHTKAILCLAVV--SNLLFSG-SSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 336 ~~~~~----~~~~~~~~~~~~---~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
++... ..........+. ..+.+-......|.++ +++|.++ -..+.|.+||+... ...+.+..+.-
T Consensus 290 g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~-----~~~~lv~~I~t 364 (462)
T 2ece_A 290 GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP-----FKPVLTGKVKL 364 (462)
T ss_dssp TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST-----TSCEEEEEEEC
T ss_pred CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC-----CCcEEEEEEEe
Confidence 43210 000000000000 0000001234566666 4455544 44789999998642 12344444322
Q ss_pred CC--------------cceEEEEEEecCC
Q 041325 406 HR--------------RPVKCLTAVVDSD 420 (450)
Q Consensus 406 h~--------------~~v~~l~~~~~~~ 420 (450)
.. ..-..++++||++
T Consensus 365 GG~~~~~~~~~G~~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 365 GGIFHRADHPAGHKLTGAPQMLEISRDGR 393 (462)
T ss_dssp BTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred CCeeccccccccccCCCCCCEEEEcCCCC
Confidence 10 1257889999998
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.5e-05 Score=74.02 Aligned_cols=275 Identities=11% Similarity=0.102 Sum_probs=139.0
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE-EEEEeCCeEEEEe------CCCeEEEEEcCCCcee
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK-SLVVLGDKLFSAH------QDHKIRVWKIDNNTSA 160 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iw~~~~~~~~ 160 (450)
++.++.|+.|..+|..+++.+......... ....+. .-....+.++.++ .+|.|+.+|.++++..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~--------~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIK--------VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGG--------GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCC--------ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 888889999999999999987663322100 000111 1112355666665 3899999999999765
Q ss_pred EEeccCcccccc-eeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce-EEEEEccCCCEEEEEeCC-------
Q 041325 161 YYSTSGKLKNKY-YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV-SALALSSDGSLLYSTSWD------- 231 (450)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d------- 231 (450)
............ ........ ...+.. .......+... .+..-...+ ..+++.++..+++.+..+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~--~~~~g~---~~~g~~tw~g~--~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIK--NPHYGQ---KGLGTGTWEGD--AWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTT--CGGGCC---TTHHHHTSSTT--GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred EEEcCCCCccccccccccccc--cccccc---cccccccCCCc--ceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 433222110000 00000000 000000 00000000000 000000011 134566666667766554
Q ss_pred ---------CcEEEEecCCCeEEEEeeccccc--------ceEEEEEe-ecCC--cEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 232 ---------RTFKIWRTSDFRCLESVKNAHDD--------AINAIVVS-KSND--GFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 232 ---------g~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~-~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+.|..+|.++++.+-.++..+.. ...-+... .+++ ..++.++.+|.+.++|.++++....
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 47999999999998887743321 11111221 1121 3577789999999999988763211
Q ss_pred ccchhhhh----Hh-hcc--------------------------cceEEEEEcCCCCEEEEee-----------------
Q 041325 292 KKHSLVQT----LE-KHK--------------------------SAVTALALSTDGTVLYSGA----------------- 323 (450)
Q Consensus 292 ~~~~~~~~----~~-~~~--------------------------~~i~~l~~~~~~~~l~~g~----------------- 323 (450)
........ .. ... ..-..++++|+..++++..
T Consensus 349 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g 428 (599)
T 1w6s_A 349 NKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAG 428 (599)
T ss_dssp EESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred ccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCC
Confidence 11000000 00 000 0012456777666655432
Q ss_pred ----------------------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeE
Q 041325 324 ----------------------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTI 381 (450)
Q Consensus 324 ----------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v 381 (450)
.+|.|..||+.+++.+..... ...... -.+...+.+++.++.||.+
T Consensus 429 ~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---------~~~~~~---g~~~tagg~vf~gt~dg~l 496 (599)
T 1w6s_A 429 QFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---------RFAVWG---GTMATAGDLVFYGTLDGYL 496 (599)
T ss_dssp SCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---------SSCCCS---BCEEETTTEEEEECTTSEE
T ss_pred cceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---------CCCccC---cceEecCCEEEEECCCCeE
Confidence 346788888888876532111 000111 1234457788889999999
Q ss_pred EEeeCCCC
Q 041325 382 RIWRRSSS 389 (450)
Q Consensus 382 ~iwd~~~~ 389 (450)
+.||.+++
T Consensus 497 ~A~D~~tG 504 (599)
T 1w6s_A 497 KARDSDTG 504 (599)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99999987
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=6.6e-06 Score=72.85 Aligned_cols=252 Identities=6% Similarity=-0.065 Sum_probs=139.8
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeEEe
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVAT 124 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 124 (450)
.....+++.+.++.. |. .+ .+.+ |+++++.+. .++.|.+||+.+++............. .
T Consensus 50 vID~~t~~v~~~i~v-G~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~---~- 121 (368)
T 1mda_H 50 VSCAGCGVTLGHSLG-AF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---S- 121 (368)
T ss_dssp EEETTTTEEEEEEEE-CT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC---C-
T ss_pred EEECCCCeEEEEEeC-CC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc---c-
Confidence 455678899999985 33 34 5777 888888876 368999999999998776321100000 0
Q ss_pred cCCCceEEEEEeCCe--EEEEeC--CCeEEE--EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc-eEE
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQ--DHKIRV--WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN-YVQ 197 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (450)
.......++++||+ ++.+.. +..|.+ +|..+ .... .... +....+.....+. ....++ ...
T Consensus 122 -~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~~-------~~~~~p~g~~~~~-~~~~dg~~~~ 189 (368)
T 1mda_H 122 -VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSAS-------CFHIHPGAAATHY-LGSCPASLAA 189 (368)
T ss_dssp -BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECSS-------CCCCEEEETTEEE-CCCCTTSCEE
T ss_pred -cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECCC-------ceEEccCCCeEEE-EEcCCCCEEE
Confidence 01245678899887 666654 467888 88876 1111 1110 0001111111111 111111 111
Q ss_pred Eeecc----eee--------eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC--eEEEEeecc---------ccc
Q 041325 198 VRRHK----KCT--------WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF--RCLESVKNA---------HDD 254 (450)
Q Consensus 198 ~~~~~----~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~---------~~~ 254 (450)
+.... ... +.-...+. . .+++..++..+. +.+.+.|.... +.+..+... ...
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~ 264 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence 11110 000 00011222 3 555666666666 99999998653 233322210 111
Q ss_pred ceEEEEEeecCCcEEEEEc---C-----CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEee-C
Q 041325 255 AINAIVVSKSNDGFVYTGS---A-----DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGA-C 324 (450)
Q Consensus 255 ~v~~~~~~~~~~~~l~~~~---~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~-~ 324 (450)
....+.++++++.++++.. . ++.+.++|+.+.+ .+..+... .....++|+|||+ ++++.. .
T Consensus 265 g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--------vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~ 335 (368)
T 1mda_H 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------TSGPISNG-HDSDAIIAAQDGASDNYANSAG 335 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------EEECCEEE-EEECEEEECCSSSCEEEEEETT
T ss_pred cceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--------EEEEEECC-CCcceEEECCCCCEEEEEccCC
Confidence 2223678886664554433 2 2456699997766 44454433 3578999999998 455555 5
Q ss_pred CCcEEEEEcCCCceeeeC
Q 041325 325 DRSILVWERDQGNYIVDG 342 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~ 342 (450)
++.|.++|+.+++.+...
T Consensus 336 ~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 336 TEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp TTEEEEEESSSCEEEEEC
T ss_pred CCeEEEEECCCCcEEEEE
Confidence 999999999999877433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-06 Score=76.78 Aligned_cols=285 Identities=12% Similarity=0.117 Sum_probs=154.6
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCc---------ceeEEe------------cCC------Cc--eEEEEEe--
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDH---------ANVVAT------------GNG------DA--VKSLVVL-- 136 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~---------~~~~~~------------~h~------~~--v~~l~~~-- 136 (450)
|.||+..|.|+|+-+.+++.+.......... ...++. .+. +. -..+.+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 6688899999999999888776644332110 000000 011 11 1344442
Q ss_pred -CCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 137 -GDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 137 -~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
+|+ +++...++.|.+.|+++.+... +..++. ...
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~--------------ii~ip~----------------------------g~~ 135 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDA--------------ILEIPN----------------------------AKG 135 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEE--------------EEECSS----------------------------CCS
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEee--------------EEeCCC----------------------------CCC
Confidence 122 5555557789999999984321 112321 124
Q ss_pred eEEEEE-c-cCCCEEEEEe------------------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE
Q 041325 213 VSALAL-S-SDGSLLYSTS------------------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 213 v~~~~~-~-~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
...+++ . |+++++++++ .++.+.+.|..+.+...++.-+ +....++++|+++ ++++.
T Consensus 136 phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk-~~~vt 212 (595)
T 1fwx_A 136 IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGK-WAFST 212 (595)
T ss_dssp EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSS-EEEEE
T ss_pred CcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC--CCccceEECCCCC-EEEEE
Confidence 566776 4 7888887774 2467999999999988888732 2456777888555 55544
Q ss_pred cCC---------------CcEEEEeCcchhhhc--c-------------cc--chh-hhhHhhcccceEEEEEcCCCCEE
Q 041325 273 SAD---------------TKIKVWKKLRAALQV--N-------------KK--HSL-VQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 273 ~~d---------------g~i~vwd~~~~~~~~--~-------------~~--~~~-~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
+.+ ..|.+.|....+... . .. ... +..+. -.....++.++|||+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHL 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEE
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEE
Confidence 433 234455443321100 0 00 001 11111 12345678999999987
Q ss_pred EEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCcc--ccC
Q 041325 320 YSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVT--DHQ 394 (450)
Q Consensus 320 ~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~--~~~ 394 (450)
++++ .+.+|.++|+.+.+......-.... ........ ......++|+++ ...+...|+.|.+||+..... ...
T Consensus 292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~-~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~ 369 (595)
T 1fwx_A 292 CVAGKLSPTVTVLDVTRFDAVFYENADPRS-AVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGE 369 (595)
T ss_dssp EEECTTSSBEEEEEGGGHHHHHHSCCCGGG-GEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTC
T ss_pred EEeCCCCCeEEEEECcccccccccccCccc-ceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccc
Confidence 7665 5789999999965311100000000 01111111 233577888754 455677899999999876210 001
Q ss_pred CCceeEEEecCCCcce-----EEEEEEecCC
Q 041325 395 KGYSCLAVLEGHRRPV-----KCLTAVVDSD 420 (450)
Q Consensus 395 ~~~~~~~~~~~h~~~v-----~~l~~~~~~~ 420 (450)
+..+.+..+..|-.+- ..+.++||++
T Consensus 370 ~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 370 KVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp SCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred ccceeEEEeecccccccceeccceEeCCCCC
Confidence 2235566666554432 1223466776
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00012 Score=62.01 Aligned_cols=197 Identities=12% Similarity=0.110 Sum_probs=117.8
Q ss_pred ceEEEEEe--CCE-EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEEE-EeCCCeEE
Q 041325 77 YIPSLAIA--GKL-LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLFS-AHQDHKIR 150 (450)
Q Consensus 77 ~v~~~~~d--~~~-l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s-~~~dg~i~ 150 (450)
.+..+++| +.. +++-..++.|.+++.++...... ..........+++.++ .++. -...+.|.
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~------------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~ 104 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI------------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIE 104 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE------------ECTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE------------EECCCCCccEEEEEecCCeEEEEECCCCEEE
Confidence 46788884 444 44555678999999876653322 1122246788899863 3444 44567888
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+++++...... + .. ........++++|++..|+.+..
T Consensus 105 ~~~~~g~~~~~--------------~--~~---------------------------~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 105 VAKMDGTQRRV--------------L--FD---------------------------TGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp EEETTSCSCEE--------------E--EC---------------------------SSCSSEEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEE--------------E--EE---------------------------CCCCCccEEEEeeCCCEEEEEEC
Confidence 88886542100 0 00 01124678999996655555543
Q ss_pred ---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 231 ---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 231 ---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
.+.|..+++.. +....+..........++++++++.++++-...+.|.++|...... ..... .....
T Consensus 142 ~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--------~~~~~-~~~~P 211 (267)
T 1npe_A 142 NRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR--------RKVLE-GLQYP 211 (267)
T ss_dssp CSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE--------EEEEE-CCCSE
T ss_pred CCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce--------EEEec-CCCCc
Confidence 36888888764 3233332123346788999986665677777788999999865431 01111 12334
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
..++.. ++.++++...++.|.++|..+++.+
T Consensus 212 ~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 212 FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence 566664 3444444445689999999988755
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-05 Score=77.45 Aligned_cols=272 Identities=12% Similarity=0.069 Sum_probs=136.6
Q ss_pred eCCEEEEeeCCC-----------cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC-CCeE
Q 041325 84 AGKLLYGGSSNG-----------EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ-DHKI 149 (450)
Q Consensus 84 d~~~l~tgs~dg-----------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i 149 (450)
++++++.|+.++ .+.+||..+++...... ....+.....++++..+. ++.|+. ++.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~---------~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV---------TVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE---------EECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc---------cCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 788888887543 58899998876443311 111233334455665433 667764 5679
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+||..+.+- ..+..++ ....-.+++..+++++++.|+
T Consensus 268 ~~yd~~t~~W--------------~~~~~~~----------------------------~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 268 SLYDSSSDSW--------------IPGPDMQ----------------------------VARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp EEEEGGGTEE--------------EECCCCS----------------------------SCCSSCEEEECTTSCEEEECC
T ss_pred EEecCcCCce--------------eECCCCC----------------------------ccccccceEEecCCeEEEEeC
Confidence 9999887631 1111111 111123455567889999988
Q ss_pred -CC-----CcEEEEecCCCeEEEEee---cccccceEEEEEeecCCcEEEEEcCC---------CcEEEEeCcchhhhcc
Q 041325 230 -WD-----RTFKIWRTSDFRCLESVK---NAHDDAINAIVVSKSNDGFVYTGSAD---------TKIKVWKKLRAALQVN 291 (450)
Q Consensus 230 -~d-----g~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~ 291 (450)
.+ ..+.+||..+.+-...-. ......-....+.. ++..++.++.+ ..+..||..+....
T Consensus 306 ~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~-- 382 (656)
T 1k3i_A 306 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV-- 382 (656)
T ss_dssp CCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--
T ss_pred cccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCccee--
Confidence 34 569999998765332200 00000000000111 22334444444 35677887654311
Q ss_pred ccchhhhhHhh------cccceEEEEEcC-CCCEEEEeeCCC-----------cEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 292 KKHSLVQTLEK------HKSAVTALALST-DGTVLYSGACDR-----------SILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 292 ~~~~~~~~~~~------~~~~i~~l~~~~-~~~~l~~g~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
........ ....-.++.|.. ++++++.|+.++ .|.+||..+.+..... ..
T Consensus 383 ---~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---------~~ 450 (656)
T 1k3i_A 383 ---KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA---------SN 450 (656)
T ss_dssp ---EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC---------TT
T ss_pred ---ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc---------cC
Confidence 00000000 011223444433 778888887543 5777887765433110 00
Q ss_pred cccCCccceEEEEE-eCCeEEEEeCC-----------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 354 ALRGHTKAILCLAV-VSNLLFSGSSD-----------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 354 ~~~~~~~~v~~~~~-~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
.+......-.++.. ++.+++.|+.+ ..+.+||..+. .+..+..+...........+.++++
T Consensus 451 ~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~------~W~~~~~~~~~R~~hs~a~ll~dg~- 523 (656)
T 1k3i_A 451 GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD------TFYKQNPNSIVRVYHSISLLLPDGR- 523 (656)
T ss_dssp CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT------EEEECCCCSSCCCTTEEEEECTTSC-
T ss_pred CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC------ceeecCCCCCccccccHhhcCCCcE-
Confidence 11111111233334 56688888754 45889998753 2333322222222233445567887
Q ss_pred CCCCCCCCCceEEEEEccc
Q 041325 422 SNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~~ 440 (450)
+++.||.
T Consensus 524 ------------v~v~GG~ 530 (656)
T 1k3i_A 524 ------------VFNGGGG 530 (656)
T ss_dssp ------------EEEEECC
T ss_pred ------------EEecCCC
Confidence 8888885
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00026 Score=61.95 Aligned_cols=191 Identities=10% Similarity=0.054 Sum_probs=106.9
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeec----ccccceEEEEEee-cCCcEEEEEcC-----------
Q 041325 212 TVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKN----AHDDAINAIVVSK-SNDGFVYTGSA----------- 274 (450)
Q Consensus 212 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~~l~~~~~----------- 274 (450)
.+..+++.+ +++ |+.+...+.|..+|..+++. ..+.. ......+.+++.+ ++. +.++...
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCccccccccccee
Confidence 468899997 565 55555455688888875532 22210 1113467788886 433 4443322
Q ss_pred ------CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 275 ------DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 275 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
++.|..||..+++. ..+.........++++|+++.|+.+ ..++.|.+|++..... .
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~---------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--------~ 220 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKET---------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--------G 220 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEE---------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--------T
T ss_pred hcccCCCceEEEEeCCCCEE---------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--------C
Confidence 36688888654431 1111112345679999999866655 5568999999875320 0
Q ss_pred ceeeeccccCCccceEEEEEeC--CeEEEEeC----------CCeEEEeeCCCCccccCCCceeEEEecCC----CcceE
Q 041325 348 HMVLKGALRGHTKAILCLAVVS--NLLFSGSS----------DNTIRIWRRSSSVTDHQKGYSCLAVLEGH----RRPVK 411 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h----~~~v~ 411 (450)
......... + ...+++++ ++.++... .+.|..+|... +.+..+... ...++
T Consensus 221 ~~~~~~~~~---g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---------~~~~~~~~~~g~~~~~~~ 287 (322)
T 2fp8_A 221 TAEVLVKIP---N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG---------NILEVIPLPPPFAGEHFE 287 (322)
T ss_dssp CEEEEEECS---S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS---------CEEEEEECCTTTTTSCCC
T ss_pred ccceEEeCC---C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC---------CEEEEEECCCCCccccce
Confidence 111111111 2 45677764 44444333 45677777642 334444322 23466
Q ss_pred EEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 412 CLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+++ .++. ++++....+.|..+++
T Consensus 288 ~~~~-~~g~-------------L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 288 QIQE-HDGL-------------LYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEEE-ETTE-------------EEEECSSCSEEEEEEC
T ss_pred EEEE-eCCE-------------EEEeecCCCceEEEec
Confidence 6665 4555 6777777888888876
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.8e-05 Score=72.12 Aligned_cols=212 Identities=11% Similarity=0.084 Sum_probs=117.6
Q ss_pred eCCEEEEeeC-CCcEEEecC-CCCCceeeeecCCCCcceeEEecCCCceEEEEE--eCCe----EEEEeCCCeEEEEEcC
Q 041325 84 AGKLLYGGSS-NGEIRAWNR-DPNNYVNITSTDVGDHANVVATGNGDAVKSLVV--LGDK----LFSAHQDHKIRVWKID 155 (450)
Q Consensus 84 d~~~l~tgs~-dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~----l~s~~~dg~i~iw~~~ 155 (450)
.+..++.++. ++.|..+|. .+++.+............... ........+++ ..+. ++.++.|+.|..+|..
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~-~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVA-CCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGC-SSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccc-cccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 4666777776 899999999 899987764432211000000 00001122445 4455 8889999999999999
Q ss_pred CCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe------
Q 041325 156 NNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------ 229 (450)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------ 229 (450)
+++............ .......++ + .++ .+++++
T Consensus 140 TG~~~W~~~~~~~~~----------------------------------~~~~~ssP~--v---~~g-~V~vg~~g~e~g 179 (599)
T 1w6s_A 140 TGETVWKVENSDIKV----------------------------------GSTLTIAPY--V---VKD-KVIIGSSGAELG 179 (599)
T ss_dssp TCCEEEEEECCCGGG----------------------------------TCBCCSCCE--E---ETT-EEEECCBCGGGT
T ss_pred CCCEEEeecCCCCCc----------------------------------cceeecCCE--E---ECC-EEEEEecccccC
Confidence 986533221110000 000001111 1 133 445544
Q ss_pred CCCcEEEEecCCCeEEEEeecccccc------------------------------------e-EEEEEeecCCcEEEEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDA------------------------------------I-NAIVVSKSNDGFVYTG 272 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~------------------------------------v-~~~~~~~~~~~~l~~~ 272 (450)
.+|.|+.+|.++++.+-.+....... + ..+++.+ ..++++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 37999999999999887776321110 0 1234544 34466666
Q ss_pred cCC----------------CcEEEEeCcchhhhccccchhhhh------HhhcccceEEEEEc-CCC---CEEEEeeCCC
Q 041325 273 SAD----------------TKIKVWKKLRAALQVNKKHSLVQT------LEKHKSAVTALALS-TDG---TVLYSGACDR 326 (450)
Q Consensus 273 ~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~i~~l~~~-~~~---~~l~~g~~dg 326 (450)
..+ +.|..+|.++++.. +..... +.....++. +... .+| ..++.++.+|
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~----W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G 333 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK----FGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNG 333 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE----EEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTS
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCcee----eEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCc
Confidence 654 37888998887621 111000 001112221 2222 467 5677889999
Q ss_pred cEEEEEcCCCceeeeC
Q 041325 327 SILVWERDQGNYIVDG 342 (450)
Q Consensus 327 ~i~vwd~~~~~~~~~~ 342 (450)
.++++|.++++.+...
T Consensus 334 ~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 334 IVYTLDRTDGALVSAN 349 (599)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCEeecc
Confidence 9999999999987654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00086 Score=59.26 Aligned_cols=235 Identities=11% Similarity=0.053 Sum_probs=134.3
Q ss_pred cceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEE-EEeCCCeEEE
Q 041325 76 SYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLF-SAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~-s~~~dg~i~i 151 (450)
+..+|.+.+ ..+|+.+.. ..|+..+++....... . .....+..++|.+. .|+ +-...+.|..
T Consensus 34 d~~~C~~~~~~~~ll~~~~-~~I~~i~~~g~~~~~~------------~-~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r 99 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLL------------L-NNLENAIALDFHHRRELVFWSDVTLDRILR 99 (349)
T ss_dssp TSSCEEESSSCCEEEEECB-SCEEEECTTSCCEEEE------------E-CSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCcccccccCceeEeecc-cceEEEeCCCCeeEEe------------e-cCCCceEEEEEeccccEEEEEeccCCceEE
Confidence 334555552 344444433 5688888776554332 1 22345788999843 344 4445678888
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-CCEEEEEeC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSW 230 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 230 (450)
++++....... ..........+++.+. +.+.++-..
T Consensus 100 ~~~~g~~~~~~-------------------------------------------~~~~~~~p~glavd~~~g~ly~~d~~ 136 (349)
T 3v64_C 100 ANLNGSNVEEV-------------------------------------------VSTGLESPGGLAVDWVHDKLYWTDSG 136 (349)
T ss_dssp EETTSCSCEEE-------------------------------------------ECSSCSCCCEEEEETTTTEEEEEETT
T ss_pred EecCCCCceEE-------------------------------------------EeCCCCCccEEEEecCCCeEEEEcCC
Confidence 88876521100 0011124567888874 455555556
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.+.|.+.++........+. ........+++.|....++++-... +.|..+++.... ........-.....
T Consensus 137 ~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~~~~PnG 207 (349)
T 3v64_C 137 TSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--------RRIIADTHLFWPNG 207 (349)
T ss_dssp TTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEESCCSSCSCEEE
T ss_pred CCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--------cEEEEECCCCCcce
Confidence 7889999987543322232 3345678999998666566666555 788888875432 00111112345789
Q ss_pred EEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCC
Q 041325 310 LALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 310 l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~ 387 (450)
|+++|++..|+.+. ..+.|..+|+...... .. ....-.....+++..+ ++++-...+.|..++..
T Consensus 208 la~d~~~~~lY~aD~~~~~I~~~~~dG~~~~----------~~---~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~ 274 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKHHVIERANLDGSHRK----------AV---ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKF 274 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCE----------EE---ECSSCSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCceE----------EE---EeCCCCCceEEEEECCEEEEecCCCCeEEEEEcc
Confidence 99998776666554 4678999998743211 01 1111223456666655 45555567788888754
Q ss_pred CC
Q 041325 388 SS 389 (450)
Q Consensus 388 ~~ 389 (450)
++
T Consensus 275 ~G 276 (349)
T 3v64_C 275 TG 276 (349)
T ss_dssp TC
T ss_pred CC
Confidence 43
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00058 Score=61.31 Aligned_cols=232 Identities=12% Similarity=0.061 Sum_probs=132.7
Q ss_pred EEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEE-EEeCCCeEEEEEc
Q 041325 79 PSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLF-SAHQDHKIRVWKI 154 (450)
Q Consensus 79 ~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~-s~~~dg~i~iw~~ 154 (450)
+|.+.+ ..+|+.+.. ..|+..++........ ......+..++|.+. .|+ +-...+.|..+++
T Consensus 80 ~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~-------------~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~ 145 (386)
T 3v65_B 80 SCKALGPEPVLLFANR-IDIRQVLPHRSEYTLL-------------LNNLENAIALDFHHRRELVFWSDVTLDRILRANL 145 (386)
T ss_dssp CEEECSSCCEEEEECB-SCEEEECTTSCCCEEE-------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eECCccccceeEeecC-ccceeeccCCCcEEEE-------------ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 344442 344444433 6788888876654333 122346788999853 344 4445678888888
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-CCEEEEEeCCCc
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRT 233 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 233 (450)
+........ .........+++++. +.++++-...+.
T Consensus 146 ~g~~~~~~~-------------------------------------------~~~~~~p~glavd~~~g~lY~~d~~~~~ 182 (386)
T 3v65_B 146 NGSNVEEVV-------------------------------------------STGLESPGGLAVDWVHDKLYWTDSGTSR 182 (386)
T ss_dssp TSCCEEEEE-------------------------------------------CSSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred CCCCcEEEE-------------------------------------------eCCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence 765211100 001123466888874 444555556778
Q ss_pred EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 234 FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
|.+.++........+. ........+++.|....++++-... +.|..+++.... ........-.....|++
T Consensus 183 I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~~~~PnGlav 253 (386)
T 3v65_B 183 IEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--------RRIIADTHLFWPNGLTI 253 (386)
T ss_dssp EEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEEEECSSCSCEEEEEE
T ss_pred EEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--------cEEEEECCCCCeeeEEE
Confidence 9988887543333332 3345678999998666555665555 778888865432 01111112345689999
Q ss_pred cCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 313 STDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 313 ~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
+|++..|+.+. ..+.|..+|+...... .. ..........+++.++ ++++-...+.|..++..++
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~----------~~---~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 254 DYAGRRMYWVDAKHHVIERANLDGSHRK----------AV---ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EGGGTEEEEEETTTTEEEEECTTSCSCE----------EE---ECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCCeeE----------EE---EECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence 98766666554 4677999987643211 01 1111223456666655 5556666788888885543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.38 E-value=0.0032 Score=64.50 Aligned_cols=177 Identities=12% Similarity=0.148 Sum_probs=108.5
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeec---CCcEEEEEc----------CCCcEEEEeCcchhhhccccchhhhh
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKS---NDGFVYTGS----------ADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.|++.|..+.+.+..+.......+.+++...- ...++++|+ ..|.|.+|++..++ .+.+..
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k------L~lv~~ 881 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK------LQTVAE 881 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE------EEEEEE
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE------EEEEEE
Confidence 46778877777777666556666777765432 234777776 35889999986322 222322
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDN 379 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 379 (450)
. ..++.+++++-- +| +|++|- ..+|++|++...+.+. .......+ -.+..+...+++++.|..-.
T Consensus 882 ~-~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~----------~~~~~~~~-i~~~~l~~~~~~I~vgD~~~ 946 (1158)
T 3ei3_A 882 K-EVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR----------TECNHYNN-IMALYLKTKGDFILVGDLMR 946 (1158)
T ss_dssp E-EESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE----------EEEEECCC-SCEEEEEEETTEEEEEESSB
T ss_pred E-EcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE----------EEeecccc-EEEEEEeccCCEEEEEEhhh
Confidence 2 246778888744 45 444443 5789999998654331 00111111 11346666789999999888
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|.++.++.. ......+. -..+...++++.+-.++ .++.+..+|.|.+...
T Consensus 947 Sv~~~~y~~~----~~~L~~~a-~D~~~~~vta~~~ld~~--------------t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 947 SVLLLAYKPM----EGNFEEIA-RDFNPNWMSAVEILDDD--------------NFLGAENAFNLFVCQK 997 (1158)
T ss_dssp CEEEEEEETT----TTEEEEEE-ECCSCBCEEEEEEEETT--------------EEEEEETTSEEEEEEE
T ss_pred eEEEEEEEcC----CCeEEEEE-eecccccEEEEEEEccC--------------cEEEEcCCCcEEEEec
Confidence 8887765532 11112222 23356678899887664 5777889999888753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00089 Score=58.00 Aligned_cols=210 Identities=12% Similarity=0.108 Sum_probs=119.6
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL 136 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 136 (450)
.....+.+..+. . ......+++ +++++++-..++.|..||.+... ... ..-...+..+++.
T Consensus 18 ~~~~~~~~~~~p--~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~-------------~~~~~~p~gia~~ 80 (306)
T 2p4o_A 18 ELAPAKIITSFP--V-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIH-------------ATVEGKVSGLAFT 80 (306)
T ss_dssp CCCCEEEEEEEC--T-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEE-------------EECSSEEEEEEEC
T ss_pred cCCCceEeEeCC--C-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEE-------------EeCCCCceeEEEc
Confidence 344556666664 2 256778888 57877777788999999977542 221 1122467889998
Q ss_pred CCe-EEEEeC--CC-eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 137 GDK-LFSAHQ--DH-KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 137 ~~~-l~s~~~--dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
+++ ++.+.. ++ .|..++..+++... +...+ ....
T Consensus 81 ~dG~l~vad~~~~~~~v~~~d~~~g~~~~--------------~~~~~----------------------------~~~~ 118 (306)
T 2p4o_A 81 SNGDLVATGWNADSIPVVSLVKSDGTVET--------------LLTLP----------------------------DAIF 118 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTSCEEE--------------EEECT----------------------------TCSC
T ss_pred CCCcEEEEeccCCcceEEEEcCCCCeEEE--------------EEeCC----------------------------Cccc
Confidence 766 555542 22 35556655553211 11110 0111
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCCeE-EEEee--------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVK--------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
...++..+++..+++-..++.|..+|...++. +.... .......+.+ +++++.++++-...+.|..|++
T Consensus 119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~ 196 (306)
T 2p4o_A 119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPV 196 (306)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEB
T ss_pred cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEe
Confidence 23344444444444444578888888876532 21110 0111234555 6656656777778889999998
Q ss_pred cc-hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 284 LR-AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 284 ~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.. +... . ...+. .......++++++|++.++....+.|.++|.. ++
T Consensus 197 ~~~g~~~---~---~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~ 243 (306)
T 2p4o_A 197 DSTDKPG---E---PEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS 243 (306)
T ss_dssp CTTSCBC---C---CEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC
T ss_pred CCCCCCC---c---cEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC
Confidence 64 2210 0 01110 11345778999999887777778899999875 44
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.28 E-value=7.2e-05 Score=69.37 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=125.3
Q ss_pred EEEEE-----eCCEEEEeeC-CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCe--EEEEe----
Q 041325 79 PSLAI-----AGKLLYGGSS-NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDK--LFSAH---- 144 (450)
Q Consensus 79 ~~~~~-----d~~~l~tgs~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~--l~s~~---- 144 (450)
-.+++ ||++|+.... ++.|.+-|+++.+...+... ........+++. |+. +++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-----------p~g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-----------PNAKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-----------CCCCCCcceeeeecCCCcEEEEeccccc
Confidence 56666 7888887665 45799999999987775321 222356677762 444 55553
Q ss_pred --------------CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 145 --------------QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 145 --------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
.++.+.+.|.++.+.......+... ..+..-+ ++++......+.. ....+..-.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~p----d~~~~sp--dGk~~~vt~~~se------~~~~i~~~~ 226 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNL----DNCDADY--EGKWAFSTSYNSE------KGMTLPEMT 226 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCC----CCEEECS--SSSEEEEEESCTT------CCSSHHHHT
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCc----cceEECC--CCCEEEEEecCcc------cCcchhhcc
Confidence 3467889998887443322221100 1111111 1111111111000 000000000
Q ss_pred ----CceEEE------EEccCCCEEEEEeCCCcEEEEecCC--CeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 211 ----DTVSAL------ALSSDGSLLYSTSWDRTFKIWRTSD--FRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 211 ----~~v~~~------~~~~~~~~l~~~~~dg~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
+.|.-+ .+.++|+.... +.|.+.|..+ ++. +..+. -.....++.++|++...++++..+..
T Consensus 227 ~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~ 300 (595)
T 1fwx_A 227 AAEMDHIVVFNIAEIEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPT 300 (595)
T ss_dssp CCSEEEEEEEEHHHHHHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSB
T ss_pred ccccceEEEeeccceeEeccCCCeeEE----CcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCe
Confidence 001101 12334544333 4599999987 544 45554 34567889999988877888888999
Q ss_pred EEEEeCcchhhhccc----cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 278 IKVWKKLRAALQVNK----KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 278 i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
|.++|+.+.+..... ........ .-......++|+|+|...++...|+.|.+||+.+
T Consensus 301 VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 301 VTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 999999765311000 00011111 1234578899999995455666799999999986
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0011 Score=55.15 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=119.3
Q ss_pred cCCCceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+-.+.+..++++|+++. +++...++.|...|.. ++.+..+..........|++.+ ++.++++.-.++.+.++++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCC
Confidence 44457999999997664 4557788999999998 8888887533346778888885 3335566667788888887543
Q ss_pred hh-hccccch-hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec----cccCCcc
Q 041325 287 AL-QVNKKHS-LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG----ALRGHTK 360 (450)
Q Consensus 287 ~~-~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 360 (450)
.. ....... ... ....+.....++|+|+++.|+++.+.....+|.+. +.. . ........ .-..+..
T Consensus 102 ~~i~~~~~~~~~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~~----~--~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 102 SEVKILKKIKIPLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GLL----S--SNELHISKDKALQRQFTLD 173 (255)
T ss_dssp CCEEEEEEEECCCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-STT----C--SSCCEEEECHHHHHTCCSS
T ss_pred Ceeeeeeeeccccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-ccc----c--CCceeeecchhhccccccC
Confidence 31 0000000 000 11235567999999999888887776655666654 100 0 00001100 0011234
Q ss_pred ceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEec-CC------CcceEEEEEEecCC
Q 041325 361 AILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE-GH------RRPVKCLTAVVDSD 420 (450)
Q Consensus 361 ~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~h------~~~v~~l~~~~~~~ 420 (450)
.+.++++++. +++....++.+.++|.... ......+. +. ...-..|+|.+++.
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-------~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-------VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTTCC-------EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-------EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 5688889854 7777777888999997742 12222332 21 12568999999988
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0018 Score=58.08 Aligned_cols=194 Identities=14% Similarity=0.037 Sum_probs=114.0
Q ss_pred CceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 211 DTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 211 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
..+..++|++.+. ++++-...+.|..+++........+. ........+++.+..+.++++-...+.|.+.++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--
Confidence 3578899997544 45555567889999988665433333 2334567788887666677777778889888875432
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
....+.........++++|.+..|+.... . +.|..+++...... ......-.....|++
T Consensus 193 ------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-------------~~~~~~~~~PnGlav 253 (386)
T 3v65_B 193 ------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-------------IIADTHLFWPNGLTI 253 (386)
T ss_dssp ------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-------------EEECSSCSCEEEEEE
T ss_pred ------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-------------EEEECCCCCeeeEEE
Confidence 01111122345789999987666665543 3 67888887643211 011111234577888
Q ss_pred e--CC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcE
Q 041325 368 V--SN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444 (450)
Q Consensus 368 ~--~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i 444 (450)
+ +. +.++-+..+.|..+|+... .....+.........|++ ..+. ++++-...+.|
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~dG~--------~~~~~~~~~~~~P~giav-~~~~-------------ly~td~~~~~V 311 (386)
T 3v65_B 254 DYAGRRMYWVDAKHHVIERANLDGS--------HRKAVISQGLPHPFAITV-FEDS-------------LYWTDWHTKSI 311 (386)
T ss_dssp EGGGTEEEEEETTTTEEEEECTTSC--------SCEEEECSSCSSEEEEEE-ETTE-------------EEEEETTTTEE
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCC--------eeEEEEECCCCCceEEEE-ECCE-------------EEEeeCCCCeE
Confidence 7 33 4455556778999987642 111112222334566776 3333 55555556666
Q ss_pred EEEE
Q 041325 445 KIWQ 448 (450)
Q Consensus 445 ~iw~ 448 (450)
..++
T Consensus 312 ~~~~ 315 (386)
T 3v65_B 312 NSAN 315 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0022 Score=55.78 Aligned_cols=230 Identities=16% Similarity=0.114 Sum_probs=128.7
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEE-EEeCCCeEEEEEcCCCceeEEe
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLF-SAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~-s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
+|+.+.. ..|+..|+++.+.... ......+.+++|.+. .|+ +-..++.|..++++.....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~-------------~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--- 65 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSL-------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--- 65 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEE-------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------
T ss_pred EEEEECC-CeEEEEECCCcceEeh-------------hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC---
Confidence 3444443 5688889887765443 122346788999853 344 4445688888887752000
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~ 242 (450)
. .... .+.........+++++. +++.++-...+.|.+.|+...
T Consensus 66 ---~------~~~~---------------------------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 66 ---S------SYDT---------------------------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp -----------CEE---------------------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred ---c------ccEE---------------------------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 0 0000 00011124578888874 445555566789999998754
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
.....+. ........+++.|....++++.... +.|...++..... ..+ ....-.....+++++++..|+.
T Consensus 110 ~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------~~~--~~~~~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 110 KRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSL--VTENIQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEE--ECSSCSCEEEEEEETTTTEEEE
T ss_pred ceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------EEE--EECCCCCceEEEEeccCCEEEE
Confidence 3333332 3345678999998555455555443 6788887643220 001 0112345789999987776666
Q ss_pred ee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 322 GA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 322 g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
+. ..+.|..+|+...... ... .....-.....+++.++ ++++-...+.|..++..++
T Consensus 181 ~D~~~~~I~~~d~dg~~~~----------~~~-~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRK----------TIL-EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EETTTTEEEEEETTSCSCE----------EEE-ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCeEEEEecCCCceE----------EEe-ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence 55 4578999998743211 011 11111123456666655 5555556788988887654
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0014 Score=59.71 Aligned_cols=153 Identities=10% Similarity=0.075 Sum_probs=91.2
Q ss_pred ceEEEEEeCC--e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGD--K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~--~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
....|+++|+ . |+.+...+.|+.+|++.......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~------------------------------------------- 174 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV------------------------------------------- 174 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE-------------------------------------------
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE-------------------------------------------
Confidence 4577888862 3 66666557788888876532110
Q ss_pred eecCCCceEEEEEccCCCEEEEEeC-CC----cEEEEecCCCeEE--EEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSW-DR----TFKIWRTSDFRCL--ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
.........+++++++++|+.+.. ++ .+...+. .+... ..+. .......++++|....++++-..++.|
T Consensus 175 -~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 175 -YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp -ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred -ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEE
Confidence 012235788999999996666554 22 2333343 22221 2222 234467788887555566666678899
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQ 335 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~ 335 (450)
..++...+... .+... ........++|+|+|++|+.+ ...+.|..++...
T Consensus 251 ~~~~~~~~~~~------~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 251 FRYDFTTQETT------PLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEETTTTEEE------EEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEECCCCcEE------EEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99998654310 01111 112356789999999955544 4678899988763
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.0029 Score=55.85 Aligned_cols=155 Identities=15% Similarity=0.026 Sum_probs=96.3
Q ss_pred ceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+..++|++....| ++-...+.|..+++........+. ........+++.+..+.++++-...+.|.+.++....
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 57889999755544 454567889999988655333333 2334567888887666677777778899999875432
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEee-CC-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CD-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
..............++++|.+..|+... .+ +.|..+++...... ......-.....++++
T Consensus 150 -----~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-------------~~~~~~~~~PnGla~d 211 (349)
T 3v64_C 150 -----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-------------IIADTHLFWPNGLTID 211 (349)
T ss_dssp -----CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-------------ESCCSSCSCEEEEEEE
T ss_pred -----eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-------------EEEECCCCCcceEEEe
Confidence 0111112234568999999666555544 34 77888887643211 0111122345788887
Q ss_pred C--C-eEEEEeCCCeEEEeeCCC
Q 041325 369 S--N-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 369 ~--~-~l~s~~~dg~v~iwd~~~ 388 (450)
+ . +.++-...+.|..+|+..
T Consensus 212 ~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 212 YAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCEEEEEECCCCEEEEEeCCC
Confidence 3 3 444555667899998874
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00061 Score=65.99 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCeEEEEeeccc--c----------------------------cceEEEEEeecCCcEEEEEcCCCc---
Q 041325 231 DRTFKIWRTSDFRCLESVKNAH--D----------------------------DAINAIVVSKSNDGFVYTGSADTK--- 277 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~--~----------------------------~~v~~~~~~~~~~~~l~~~~~dg~--- 277 (450)
+|.|..+|..+++.+..+.... . .....+++.+. .++++.+..++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccc
Confidence 5899999999999988775211 0 01123566663 447777777663
Q ss_pred ----------------EEEEeCcchhhhccccchhhhhHhhcc-------cceEEEEEcCCCC---EEEEeeCCCcEEEE
Q 041325 278 ----------------IKVWKKLRAALQVNKKHSLVQTLEKHK-------SAVTALALSTDGT---VLYSGACDRSILVW 331 (450)
Q Consensus 278 ----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~l~~~~~~~---~l~~g~~dg~i~vw 331 (450)
|..+|.++++.. +.... ..|. .+.....+..+|+ .++.++.+|.++++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~----W~~~~--~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLA----WHYQV--TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEE----EEEES--STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCcee----eEeec--CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 899999887721 11110 0111 2222223334665 68999999999999
Q ss_pred EcCCCceee
Q 041325 332 ERDQGNYIV 340 (450)
Q Consensus 332 d~~~~~~~~ 340 (450)
|..+|+.+.
T Consensus 330 D~~tG~~l~ 338 (668)
T 1kv9_A 330 DRTNGKLIS 338 (668)
T ss_dssp ETTTCCEEE
T ss_pred ECCCCCEec
Confidence 999999873
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0041 Score=56.02 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=133.0
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEEEE-eCCCeEEEEEcCCCceeEE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLFSA-HQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~-~~dg~i~iw~~~~~~~~~~ 162 (450)
.+|+.+.. ..|+..+++....... ......+..|+|.+. .|+-+ ...+.|+.++++.....
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~-------------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-- 147 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSL-------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-- 147 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEE-------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred ceeEEecc-ceeEEEccCCcceeEe-------------ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--
Confidence 44554443 6788888877654433 233457889999853 34443 45677888887653100
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 241 (450)
. ...............+++.+ .+++.++-...+.|.+.++..
T Consensus 148 -----------~--------------------------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 148 -----------S--------------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp -----------C--------------------------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred -----------C--------------------------cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 0 00000011223577899988 555555656678999999876
Q ss_pred CeEEEEeecccccceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEE
Q 041325 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY 320 (450)
Q Consensus 242 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 320 (450)
......+. ........|++.|....++++-.. .+.|...++.... ........-.....|++++++..|+
T Consensus 191 ~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--------~~~~~~~~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 191 VKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVTENIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp CSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--------CEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--------cEEEEECCCCceEEEEEEeCCCEEE
Confidence 54444443 344567899999855545555433 4778888875432 1111111235678999998777776
Q ss_pred Eee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 321 SGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 321 ~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
.+. ..+.|..+|+...... .. ......-....+++..++ ++++-...+.|..+|..++
T Consensus 262 ~aD~~~~~I~~~d~dG~~~~----------~~-~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNRK----------TI-LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEETTTTEEEEEETTSCCCE----------EE-EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred EEECCCCEEEEEeCCCCccE----------EE-EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 665 4578999998743221 01 111111223456666665 5556666788988886654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0025 Score=52.87 Aligned_cols=211 Identities=12% Similarity=0.154 Sum_probs=126.5
Q ss_pred CCCcceEEEEEe--CC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-E-EEEeCCC
Q 041325 73 GNSSYIPSLAIA--GK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-L-FSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~d--~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l-~s~~~dg 147 (450)
|-...+..++++ ++ ++++...++.|...|.. ++....... .+ ....-.|++.+++ + ++.-.++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----------~g-~~D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----------DF-VKDLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----------SS-CSSEEEEEECSTTEEEEEETTTT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----------CC-CCChHHeEEeCCCEEEEEECCCC
Confidence 666789999994 44 55557778899999987 665554211 12 2467778887665 4 3434567
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 227 (450)
.+.++++......... ... .++. ...........++|+|.++.|++
T Consensus 92 ~l~~~~v~~~~~i~~~----------~~~-~~~~-----------------------~~~~~N~g~EGLA~d~~~~~L~v 137 (255)
T 3qqz_A 92 AIYVISLTPNSEVKIL----------KKI-KIPL-----------------------QESPTNCGFEGLAYSRQDHTFWF 137 (255)
T ss_dssp EEEEEEECTTCCEEEE----------EEE-ECCC-----------------------SSCCCSSCCEEEEEETTTTEEEE
T ss_pred cEEEEEcCCCCeeeee----------eee-cccc-----------------------ccccccCCcceEEEeCCCCEEEE
Confidence 8888888765310000 000 0000 00123456789999999887777
Q ss_pred EeCCCcEEEEecCC---CeEEEEee------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 228 TSWDRTFKIWRTSD---FRCLESVK------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 228 ~~~dg~i~iwd~~~---~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
+.......+|.+.. ...+..+. ......+.+++++|..+.+++....++.+..+|...... ....+..
T Consensus 138 a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~---~~~~L~~ 214 (255)
T 3qqz_A 138 FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI---GEMSLTK 214 (255)
T ss_dssp EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECST
T ss_pred EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE---EEEEcCC
Confidence 77665666665541 11122221 112346789999998877888888889999999654320 1111111
Q ss_pred hHhh---cccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 299 TLEK---HKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 299 ~~~~---~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.+.+ .-.....|+|.++|++.+ .++.+.++++..
T Consensus 215 g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 215 GSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp TGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred ccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence 1111 123668899999998544 477776766654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0036 Score=54.13 Aligned_cols=226 Identities=16% Similarity=0.060 Sum_probs=119.4
Q ss_pred CceEEEEEeCCe-EEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK-LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
.....++|.++. |+.+. .++.|..||.+..... .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------------~----------------------------- 67 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------------H----------------------------- 67 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---------------E-----------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE---------------E-----------------------------
Confidence 467788888765 55444 6788888887654110 0
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.........+++.++++++++..... .|..+|..+++...............++..+ +...+++-..++.|..+|.
T Consensus 68 -~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 68 -ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp -EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEET
T ss_pred -EeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeC
Confidence 01122578899999999766654332 4667777777654333212222334444432 3334555556888888887
Q ss_pred cchhhhccccchhhh--hHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCc
Q 041325 284 LRAALQVNKKHSLVQ--TLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
..+............ .....-.....+ +++++.|+.+ ...+.|.+|++.. ++.. ........
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--------~~~~~~~~---- 211 (306)
T 2p4o_A 146 VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--------EPEIFVEQ---- 211 (306)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--------CCEEEEES----
T ss_pred CCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--------ccEEEecc----
Confidence 543100000000000 001111234455 7788766555 4567899999874 2210 00000111
Q ss_pred cceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE---ecCC
Q 041325 360 KAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV---VDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~ 420 (450)
.....++++ +++.++....+.|.+++.... ...+..+.......++++|. +++.
T Consensus 212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~-------~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-------TTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp CCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-------EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred CCCCCeEECCCCCEEEEeCCCCeEEEECCCCC-------EEEEeecccccCCceEEEEecccCCCC
Confidence 123345555 556666666788999986521 11122233333568899998 6765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0037 Score=54.28 Aligned_cols=197 Identities=11% Similarity=0.031 Sum_probs=110.6
Q ss_pred CceEEEEEccCCC-EEEEEeCCCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 211 DTVSALALSSDGS-LLYSTSWDRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 211 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
..+..++|++.+. ++++-..++.|..+++.. +.....+..........+++.+..+.++++-..++.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 3578899998654 445555678999999875 122222221223456788888656666777778889999997543
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC--CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.. .............++++|.+..|+..... +.|..+++...... .. ....-.....
T Consensus 110 ~~--------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~----------~~---~~~~~~~P~g 168 (316)
T 1ijq_A 110 KR--------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----------SL---VTENIQWPNG 168 (316)
T ss_dssp SE--------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE----------EE---ECSSCSCEEE
T ss_pred ce--------EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE----------EE---EECCCCCceE
Confidence 20 00111122457899999966666555443 67888887532211 00 1112234578
Q ss_pred EEEeC--Ce-EEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 365 LAVVS--NL-LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 365 ~~~~~--~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+++++ +. .++-+..+.|..+|+... ..+.+............+++. .+. ++++-...
T Consensus 169 la~d~~~~~lY~~D~~~~~I~~~d~dg~------~~~~~~~~~~~~~~P~giav~-~~~-------------ly~~d~~~ 228 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKLHSISSIDVNGG------NRKTILEDEKRLAHPFSLAVF-EDK-------------VFWTDIIN 228 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEEECTTTTSSEEEEEEE-TTE-------------EEEEETTT
T ss_pred EEEeccCCEEEEEECCCCeEEEEecCCC------ceEEEeecCCccCCcEEEEEE-CCE-------------EEEEECCC
Confidence 88873 34 445556678999998742 112222221122334566663 333 55555556
Q ss_pred CcEEEEE
Q 041325 442 CEIKIWQ 448 (450)
Q Consensus 442 g~i~iw~ 448 (450)
+.|..++
T Consensus 229 ~~V~~~~ 235 (316)
T 1ijq_A 229 EAIFSAN 235 (316)
T ss_dssp TEEEEEE
T ss_pred CeEEEEe
Confidence 6666554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0046 Score=53.67 Aligned_cols=155 Identities=15% Similarity=0.052 Sum_probs=93.7
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc-CCCcEEEEeCcchhhh
Q 041325 212 TVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS-ADTKIKVWKKLRAALQ 289 (450)
Q Consensus 212 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~ 289 (450)
....+++.+ .+.++++-...+.|.++++........+. ........+++.|....++++-. ..+.|...++....
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 156 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-- 156 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--
Confidence 456788887 45555555567899999987543222222 34456789999985554445442 35778888765322
Q ss_pred ccccchhhhhH-hhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 290 VNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 290 ~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
...+ ...-.....|++++++..|+.+. ..+.|..+|+...... ... ...-.....+++
T Consensus 157 -------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~----------~~~---~~~~~~P~glav 216 (318)
T 3sov_A 157 -------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ----------AVV---KGSLPHPFALTL 216 (318)
T ss_dssp -------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----------EEE---CSCCSCEEEEEE
T ss_pred -------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE----------EEe---cCCCCCceEEEE
Confidence 1111 11224568999999776666654 4678999998743211 011 112233456676
Q ss_pred eCC-eEEEEeCCCeEEEeeCCCC
Q 041325 368 VSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 368 ~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
.++ ++++-...+.|..++..++
T Consensus 217 ~~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 217 FEDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp ETTEEEEEETTTTEEEEEETTTC
T ss_pred eCCEEEEEecCCCeEEEEECCCC
Confidence 665 5556566788999988664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00051 Score=67.61 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=72.3
Q ss_pred ceEEEEEc-cCCCEEEEEeC-CC----cEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCC----CcEEE
Q 041325 212 TVSALALS-SDGSLLYSTSW-DR----TFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----TKIKV 280 (450)
Q Consensus 212 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~v 280 (450)
.+...+|+ |||++|+-+.. +| .|+++|+.++ +.+.. ........+.|+|+++.++++...+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 99998875543 22 5999999988 63221 1112245788998766555554322 25777
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCC
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQG 336 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~ 336 (450)
+++.++.. ....+... ........+.|+|||++|+..+. ...|+++|+.++
T Consensus 252 ~~lgt~~~----~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQS----EDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGG----GCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCch----hcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 77755431 00011110 12234567899999998887653 346888888764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0055 Score=53.49 Aligned_cols=280 Identities=9% Similarity=0.031 Sum_probs=138.0
Q ss_pred CCcceEEEEE-e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEE
Q 041325 74 NSSYIPSLAI-A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRV 151 (450)
Q Consensus 74 h~~~v~~~~~-d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~i 151 (450)
-...+.+|.| + +..++ ++.+|.| +...+.++.=...... .......+.+|.+.++.++.++.++.|..
T Consensus 34 ~~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~--------~~~~~~~~~~i~~~~~~~~~~g~~g~i~~ 103 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLV--------LDHSDYRFNSVSFQGNEGWIVGEPPIMLH 103 (327)
T ss_dssp CSSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCC--------CSCCCCEEEEEEEETTEEEEEEETTEEEE
T ss_pred CCCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCC--------CCCCCccEEEEEecCCeEEEEECCCeEEE
Confidence 3457999999 4 55566 4566765 3333444311110000 01123468888998877666666674433
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
..+.++. +..+.... .+.+.+..+.+.+++..++.+ .+
T Consensus 104 -S~DgG~t-------------W~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~-~~ 141 (327)
T 2xbg_A 104 -TTDGGQS-------------WSQIPLDP---------------------------KLPGSPRLIKALGNGSAEMIT-NV 141 (327)
T ss_dssp -ESSTTSS-------------CEECCCCT---------------------------TCSSCEEEEEEEETTEEEEEE-TT
T ss_pred -ECCCCCC-------------ceECcccc---------------------------CCCCCeEEEEEECCCCEEEEe-CC
Confidence 2222211 01110000 012235566666666655554 45
Q ss_pred CcE-EEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE-EeCcchhhhccccchhhhhHhhcccceEE
Q 041325 232 RTF-KIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV-WKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 232 g~i-~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
|.| +-.| .++.-..........+..+.+.+. ..+++++ .+|.+.. +|-. + ..+..+. ......+..
T Consensus 142 g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~-~~~~~~g-~~G~~~~S~d~g-G-----~tW~~~~--~~~~~~~~~ 209 (327)
T 2xbg_A 142 GAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPS-GEYVAVS-SRGSFYSTWEPG-Q-----TAWEPHN--RTTSRRLHN 209 (327)
T ss_dssp CCEEEESS--TTSSEEEEECSCCCCEEEEEECTT-SCEEEEE-TTSSEEEEECTT-C-----SSCEEEE--CCSSSCEEE
T ss_pred ccEEEEcC--CCCCCEEeecCCCcceEEEEEcCC-CcEEEEE-CCCcEEEEeCCC-C-----CceeECC--CCCCCccce
Confidence 544 2222 233222332244567888888863 3355544 4454443 3310 1 1111221 123457888
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc-cCCccceEEEEEeC-CeEEEEeCCCeEEEeeCC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL-RGHTKAILCLAVVS-NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~ 387 (450)
+.+.+++++++ ++.+|.+++.+...++.-. ..... ..+...+.++.+.+ ..++.++.+|.|. +...
T Consensus 210 ~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~D 277 (327)
T 2xbg_A 210 MGFTPDGRLWM-IVNGGKIAFSDPDNSENWG----------ELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQD 277 (327)
T ss_dssp EEECTTSCEEE-EETTTEEEEEETTEEEEEC----------CCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESS
T ss_pred eEECCCCCEEE-EeCCceEEEecCCCCCeeE----------eccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCC
Confidence 99999887655 4567887776433232110 00000 01223577888863 3445555577663 3333
Q ss_pred CCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.+ ..+..+.........+.++.|.+++ .++.++.+|.|.-++
T Consensus 278 gG-----~tW~~~~~~~~~~~~~~~v~~~~~~--------------~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 278 GG-----QTWQQDVDVKKVPSNFYKILFFSPD--------------QGFILGQKGILLRYV 319 (327)
T ss_dssp TT-----SSCEECGGGTTSSSCCCEEEEEETT--------------EEEEECSTTEEEEEC
T ss_pred CC-----cccEEcCccCCCCCCeEEEEEECCC--------------ceEEEcCCceEEEEc
Confidence 32 2233222111234567888887554 466667889776553
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.015 Score=56.98 Aligned_cols=159 Identities=16% Similarity=0.085 Sum_probs=94.9
Q ss_pred CceEEEEEccCC-CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhh
Q 041325 211 DTVSALALSSDG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAAL 288 (450)
Q Consensus 211 ~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~ 288 (450)
.....|++.+.+ +++++-...+.|.+.++........+. ........|++.|..+.++++-..+ +.|...++....
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~- 548 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 548 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-
Confidence 356788998866 455555567899999997554333333 3445688999998655455554333 678888875432
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
........-.....|++++.+..|+.+. ..+.|..+++....... +. .....-....+|++
T Consensus 549 -------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~----------v~-~~~~~l~~P~glav 610 (791)
T 3m0c_C 549 -------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT----------IL-EDEKRLAHPFSLAV 610 (791)
T ss_dssp -------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----------EE-ECTTTTSSEEEEEE
T ss_pred -------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE----------Ee-cCCCccCCCCEEEE
Confidence 1111112235678999998777666664 45678888886433210 11 11111223456777
Q ss_pred eCCeEE-EEeCCCeEEEeeCCCC
Q 041325 368 VSNLLF-SGSSDNTIRIWRRSSS 389 (450)
Q Consensus 368 ~~~~l~-s~~~dg~v~iwd~~~~ 389 (450)
.++.|+ +-...+.|...|..++
T Consensus 611 ~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 611 FEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp ETTEEEEEETTTTEEEEEETTTC
T ss_pred eCCEEEEEECCCCEEEEEeCCCC
Confidence 766444 4445677888876654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.01 Score=53.99 Aligned_cols=154 Identities=10% Similarity=0.104 Sum_probs=85.9
Q ss_pred ceEEEEEeCC----eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 129 AVKSLVVLGD----KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 129 ~v~~l~~~~~----~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
....|++.++ .|+.+...+.|+.++..++.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~------------------------------------------ 177 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK------------------------------------------ 177 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE------------------------------------------
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe------------------------------------------
Confidence 4568888863 366665557888888866632110
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCC---C-cEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWD---R-TFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.........++++++++++++.... . .+...+...+.. ...+ ........+++.|....++++-..++.|+
T Consensus 178 --~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~ 253 (433)
T 4hw6_A 178 --TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--CNARGAKTCAVHPQNGKIYYTRYHHAMIS 253 (433)
T ss_dssp --CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--EECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred --ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--cccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence 0122357899999999944443311 1 133333221111 0111 12344567788874444555666778899
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERD 334 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~ 334 (450)
.+|..++... . .+... ........++|+|++++|+.+ ...+.|+.++..
T Consensus 254 ~~d~~~g~~~----~-~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 254 SYDPATGTLT----E-EEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EECTTTCCEE----E-EEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEECCCCeEE----E-EEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 9998654310 0 00000 111223469999999955554 456789998865
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00034 Score=67.76 Aligned_cols=75 Identities=5% Similarity=0.092 Sum_probs=46.8
Q ss_pred ceEEEEEccCCCEEEEEe-CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc-CC-----CcEEEEeCc
Q 041325 212 TVSALALSSDGSLLYSTS-WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS-AD-----TKIKVWKKL 284 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~vwd~~ 284 (450)
...++++..++++++.|+ .+..+.+||..+.+-...-.......-.+++..+ ++.+++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344567788999999998 4568999999876543322111112223444444 344777777 34 568999987
Q ss_pred chh
Q 041325 285 RAA 287 (450)
Q Consensus 285 ~~~ 287 (450)
+..
T Consensus 323 t~~ 325 (656)
T 1k3i_A 323 SKT 325 (656)
T ss_dssp TTE
T ss_pred CCc
Confidence 755
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.94 E-value=0.01 Score=53.40 Aligned_cols=158 Identities=13% Similarity=0.048 Sum_probs=95.4
Q ss_pred CCceEEEEEccCCCEEE-EEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 210 VDTVSALALSSDGSLLY-STSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
...+..++|++....|+ +-...+.|..+++.... ....+..........+++.+..+.++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 34678999998555444 44567889999887521 112222134456788888876676777778888999998764
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.. ....+.........|++.|.+.+|+.... .+.|...++...... ......-....
T Consensus 191 ~~--------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-------------~~~~~~l~~P~ 249 (400)
T 3p5b_L 191 VK--------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-------------SLVTENIQWPN 249 (400)
T ss_dssp CS--------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-------------EEECSSCSCEE
T ss_pred Cc--------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-------------EEEECCCCceE
Confidence 33 11111122345789999997666665543 367888887643211 01111223457
Q ss_pred EEEEe--CCeE-EEEeCCCeEEEeeCCC
Q 041325 364 CLAVV--SNLL-FSGSSDNTIRIWRRSS 388 (450)
Q Consensus 364 ~~~~~--~~~l-~s~~~dg~v~iwd~~~ 388 (450)
.|+++ +..| ++=...+.|..+|+..
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 78887 3344 4445567899999864
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.012 Score=53.65 Aligned_cols=125 Identities=9% Similarity=0.001 Sum_probs=75.1
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEe-ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 212 TVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 212 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
....+++++ ++.++++-..++.|+.+|..++.....+ ..........++++|+++.++++-...+.|+.++.......
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK 308 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence 456788999 7776666667789999999877652222 21222233469999866546677777889999876421100
Q ss_pred ccccchhhhh-----------HhhcccceEEEEE---------cCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 290 VNKKHSLVQT-----------LEKHKSAVTALAL---------STDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 290 ~~~~~~~~~~-----------~~~~~~~i~~l~~---------~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.......... ....-.....+++ .++|++.++-...+.|+.++. ++.
T Consensus 309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 0000000000 0011234677999 677777777667788999985 443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.011 Score=53.87 Aligned_cols=73 Identities=7% Similarity=-0.115 Sum_probs=52.3
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 212 TVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 212 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
....++++| ++.++++-..++.|..++...+................++++|+++.++++-...+.|..++..
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 356788999 7777766667889999999877653333322334578899998665466777778899998765
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.011 Score=51.21 Aligned_cols=122 Identities=15% Similarity=0.292 Sum_probs=76.5
Q ss_pred ceEEEEE--ccC-CC-EEEEEeCCCcEEEEecC-------CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 212 TVSALAL--SSD-GS-LLYSTSWDRTFKIWRTS-------DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 212 ~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.+..+++ ++. +. ++++...+|.+..|++. +.+.++++. ..+.+..+...+ ..+.|+.+-.+..|..
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADD-EYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcC-CCCeEEEecccceEEE
Confidence 4566666 663 44 67778889999999882 346677776 345778888876 4558888888876666
Q ss_pred EeCcchhhhccccchhhhhH--hhcccceEEEEE--cCCCC-EEEEee-CCCcEEEEEcC-CCcee
Q 041325 281 WKKLRAALQVNKKHSLVQTL--EKHKSAVTALAL--STDGT-VLYSGA-CDRSILVWERD-QGNYI 339 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~--~~~~~-~l~~g~-~dg~i~vwd~~-~~~~~ 339 (450)
++.+-... .....+..+ ......+..|++ .++++ +|++.+ .+..+.+||.. +.+.+
T Consensus 206 ~da~p~~~---~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 206 FSAEPDGG---SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp EECSTTSC---SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred EeCCcCCC---CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 66432110 011122222 112245777877 45555 666665 57799999997 44444
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00022 Score=69.23 Aligned_cols=157 Identities=16% Similarity=0.095 Sum_probs=88.5
Q ss_pred eEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhc
Q 041325 213 VSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~ 290 (450)
...|++.+ .++++++-...+.|.++++........+. ........|++.|....++++-... +.|..+++.....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-- 531 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-- 531 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--
Confidence 45677875 44555555567889999987554333333 2334567888887555444444333 6787777643220
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
..+ ....-.....|+++|++..|+.+ ...+.|.++++....... + ............|++.+
T Consensus 532 ----~~l--~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~----------~-~~~~~~~~~P~glavd~ 594 (699)
T 1n7d_A 532 ----YSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT----------I-LEDEKRLAHPFSLAVFE 594 (699)
T ss_dssp ----CEE--SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE----------E-CCCSSSCSSCCCCEEET
T ss_pred ----eEE--EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE----------E-EecCCcCCCceEeEEEC
Confidence 000 11122446789999876555544 456789999986432110 1 11111112234556665
Q ss_pred C-eEEEEeCCCeEEEeeCCCC
Q 041325 370 N-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 370 ~-~l~s~~~dg~v~iwd~~~~ 389 (450)
+ ++++....+.|..++..++
T Consensus 595 ~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 595 DKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp TEEEEECSTTTCEEEEETTTE
T ss_pred CEEEEEeCCCCeEEEEEccCC
Confidence 5 5555566788999987654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.70 E-value=0.02 Score=49.57 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=115.6
Q ss_pred ceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--CeE-EEEeCCCeEE
Q 041325 77 YIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--DKL-FSAHQDHKIR 150 (450)
Q Consensus 77 ~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~~~dg~i~ 150 (450)
...+++|| +.++++-...+.|..+++++...... .....-.....+++.. ..| ++-...+.|.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-----------~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~ 104 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----------VVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 104 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-----------EEEECCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-----------EEcCCCCCccEEEEEcCCCeEEEEECCCCEEE
Confidence 45677784 55666666778898888876532111 1112223455667663 333 4444567788
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS- 229 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 229 (450)
+++++...... + ..........++++|.+..|+.+.
T Consensus 105 ~~~~dG~~~~~--------------l-----------------------------~~~~~~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 105 VSNLDGSLRKV--------------L-----------------------------FWQELDQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp EEETTSCSCEE--------------E-----------------------------ECSSCSSEEEEEEEGGGTEEEEEEC
T ss_pred EEECCCCcEEE--------------E-----------------------------EeCCCCCccEEEEeCCCCEEEEEec
Confidence 88876542100 0 001223567899998655555554
Q ss_pred -CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 230 -WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 230 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
..+.|...++... ....+....-...+.|++++..+.+.++-...+.|..+|+..... . .+ .........
T Consensus 142 ~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~-~~--~~~~~~~P~ 212 (318)
T 3sov_A 142 GEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----Q-AV--VKGSLPHPF 212 (318)
T ss_dssp SSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----E-EE--ECSCCSCEE
T ss_pred CCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-----E-EE--ecCCCCCce
Confidence 3578888887633 222332123345689999986776777777888999999864320 0 11 111234456
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
.+++. .+.++++-...+.|..++..+++.
T Consensus 213 glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 213 ALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 77775 344555555678899999877653
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0094 Score=56.55 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=47.1
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC------eEEEEe------CCCe
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD------KLFSAH------QDHK 148 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~l~s~~------~dg~ 148 (450)
+++.+..++.++.|+.|..+|..+++............. ......++ ...+ .+++++ .+|.
T Consensus 113 ~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~---~~~~~sP~----v~~~~~~G~~~v~vg~~~~e~~~~g~ 185 (582)
T 1flg_A 113 AAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAG---YTMTGAPT----IVKDGKTGKVLLIHGSSGDEFGVVGR 185 (582)
T ss_dssp CEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGT---CBCCSCCE----EEECTTTCCEEEEECCBCGGGCCBCE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcC---cccccCCE----EeCCCcCCcEEEEEeccccccCCCCE
Confidence 445677888899999999999999998766433211000 00001111 1233 455554 3789
Q ss_pred EEEEEcCCCceeEEe
Q 041325 149 IRVWKIDNNTSAYYS 163 (450)
Q Consensus 149 i~iw~~~~~~~~~~~ 163 (450)
|..+|.++++.....
T Consensus 186 v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 186 LFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEECTTTCCEEEEE
T ss_pred EEEEECCCCCEEeec
Confidence 999999988876543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.018 Score=49.52 Aligned_cols=148 Identities=11% Similarity=0.183 Sum_probs=76.8
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-------CcEEEEeCcchhh
Q 041325 221 DGSLLYSTSWDR-----TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-------TKIKVWKKLRAAL 288 (450)
Q Consensus 221 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~ 288 (450)
++.+++.|+.++ .+.+||+.+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 466677776543 577888887653332111112222233333 45566666543 3588899876553
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.. +..+.........+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+......-.
T Consensus 186 ~~------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-----------~~~~~~r~~~~ 246 (302)
T 2xn4_A 186 TY------IAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-----------ADMNMCRRNAG 246 (302)
T ss_dssp EE------ECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-----------CCCSSCCBSCE
T ss_pred EE------CCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeC-----------CCCCCccccCe
Confidence 21 1111111122222333 67788888764 3688999987654321 11111111122
Q ss_pred EEEEeCCeEEEEeCCC-----eEEEeeCCCC
Q 041325 364 CLAVVSNLLFSGSSDN-----TIRIWRRSSS 389 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg-----~v~iwd~~~~ 389 (450)
.+...+.+++.|+.++ .+.+||..+.
T Consensus 247 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 247 VCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 3344555677777653 4788888753
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.027 Score=49.10 Aligned_cols=155 Identities=10% Similarity=0.145 Sum_probs=86.3
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEec--CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRT--SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
...+..+++.+++.+++.+...+..+-+|- .+-+.+ .......+..+.+.+. +.++.++.+|.+++.+...++
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~--g~~~~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPD--GRLWMIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTT--SCEEEEETTTEEEEEETTEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC---CCCCCCccceeEECCC--CCEEEEeCCceEEEecCCCCC
Confidence 346788899998887776654444444442 233333 2234567888888753 345556667887776422222
Q ss_pred hhccccchhhhhH-hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 288 LQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
.+..+..- ......+..+++.+++.+++++. +|.| .+....++.- ............+.++.
T Consensus 237 -----tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW----------~~~~~~~~~~~~~~~v~ 299 (327)
T 2xbg_A 237 -----NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTW----------QQDVDVKKVPSNFYKIL 299 (327)
T ss_dssp -----EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSC----------EECGGGTTSSSCCCEEE
T ss_pred -----eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCccc----------EEcCccCCCCCCeEEEE
Confidence 11111110 01223578899998877766654 6766 3344433211 11111112234567777
Q ss_pred Ee-CCeEEEEeCCCeEEEeeC
Q 041325 367 VV-SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 367 ~~-~~~l~s~~~dg~v~iwd~ 386 (450)
+. ++.+++++.+|.|.-++-
T Consensus 300 ~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 300 FFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEETTEEEEECSTTEEEEECC
T ss_pred EECCCceEEEcCCceEEEEcC
Confidence 74 567888888998776653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.062 Score=52.78 Aligned_cols=157 Identities=11% Similarity=0.024 Sum_probs=95.2
Q ss_pred CCceEEEEEccC-CCEEEEEeCCCcEEEEecCCC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 210 VDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 210 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
...+..++|++. +.++++-...+.|+.+++... .....+. ........|++.+..+.++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 446788999985 444555556688988988753 1222222 2445677899987677778888888999999986
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
.... ...+.........|++.|.+.+|+.... + +.|.+.++...... ......-...
T Consensus 502 G~~~--------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-------------~lv~~~l~~P 560 (791)
T 3m0c_C 502 GVKR--------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-------------SLVTENIQWP 560 (791)
T ss_dssp SSSE--------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-------------EEECSSCSCE
T ss_pred CCeE--------EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-------------EEEeCCCCCc
Confidence 4331 1111122345789999997666666543 2 67888887643321 1111122356
Q ss_pred EEEEEe--CCeE-EEEeCCCeEEEeeCCC
Q 041325 363 LCLAVV--SNLL-FSGSSDNTIRIWRRSS 388 (450)
Q Consensus 363 ~~~~~~--~~~l-~s~~~dg~v~iwd~~~ 388 (450)
..|+++ ...| ++=...+.|...++..
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 778877 3344 4444567788888864
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.026 Score=48.47 Aligned_cols=148 Identities=11% Similarity=0.158 Sum_probs=76.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-----cEEEEeCcchhhhc
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-----KIKVWKKLRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~ 290 (450)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.++ .+.+||+.+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~- 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF- 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE-
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe-
Confidence 56667777644 3588899887653322211111122233333 455667776553 5778887665422
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-------CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-------RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+........
T Consensus 138 -----~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-----------~~~p~~r~~~~ 199 (302)
T 2xn4_A 138 -----HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-----------AEMSTRRSGAG 199 (302)
T ss_dssp -----EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-----------CCCSSCCBSCE
T ss_pred -----ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-----------CCCcccccccc
Confidence 11112111222222223 66777777643 3588999887654321 11111111223
Q ss_pred EEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 364 CLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 364 ~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
++.+.+.+++.|+.+ ..+.+||+.+.
T Consensus 200 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 200 VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 344455677777664 36888998753
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.03 Score=48.05 Aligned_cols=147 Identities=10% Similarity=0.107 Sum_probs=77.1
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcchhhhc
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 290 (450)
++++++.|+.+ ..+.+||+.+.+-...-.......-.++... ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56666666643 3588899887653322211112222233333 45567777654 458889987665321
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+........++
T Consensus 190 ------~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-----------~~~p~~r~~~~~~ 250 (301)
T 2vpj_A 190 ------VTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-----------TSMTTPRCYVGAT 250 (301)
T ss_dssp ------ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-----------CCCSSCCBSCEEE
T ss_pred ------CCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-----------CCCCCcccceeEE
Confidence 1111111122222333 67777887764 4689999987764321 1111111122334
Q ss_pred EEeCCeEEEEeCC-----CeEEEeeCCC
Q 041325 366 AVVSNLLFSGSSD-----NTIRIWRRSS 388 (450)
Q Consensus 366 ~~~~~~l~s~~~d-----g~v~iwd~~~ 388 (450)
...+.+++.|+.+ ..+.+||.++
T Consensus 251 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 251 VLRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred EECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 4455566777665 3577888775
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.033 Score=47.99 Aligned_cols=147 Identities=10% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcchhhhc
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 290 (450)
++++++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 45666666533 4688899887653322111111122233333 45567777654 458889987655321
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+... ...+........++
T Consensus 199 ------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----------~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 199 ------ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF-----------VAPMKHRRSALGIT 259 (308)
T ss_dssp ------CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-----------CCCCSSCCBSCEEE
T ss_pred ------CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-----------CCCCCCCccceEEE
Confidence 1112111222223333 67778888765 568999998765432 11111111122333
Q ss_pred EEeCCeEEEEeCC-----CeEEEeeCCC
Q 041325 366 AVVSNLLFSGSSD-----NTIRIWRRSS 388 (450)
Q Consensus 366 ~~~~~~l~s~~~d-----g~v~iwd~~~ 388 (450)
...+.+++.|+.+ ..+.+||+.+
T Consensus 260 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 260 VHQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 3445566777654 3577888774
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.052 Score=49.78 Aligned_cols=120 Identities=9% Similarity=0.073 Sum_probs=71.0
Q ss_pred ceEEEEE-------ccCCCEEEEEeCCC-------cEEEEecCC-CeEE-----EEeecccccceEEEEEeecCCcEEEE
Q 041325 212 TVSALAL-------SSDGSLLYSTSWDR-------TFKIWRTSD-FRCL-----ESVKNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 212 ~v~~~~~-------~~~~~~l~~~~~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
....++| +++++.|+++...+ .|.+.+... +... ..+. .......++++|....++++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFN 264 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEE
Confidence 5788999 99999666665543 255665333 2221 1222 12345677888866666777
Q ss_pred EcCCCcEEEEeCc-------chhh-hcccc-----chhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcC
Q 041325 272 GSADTKIKVWKKL-------RAAL-QVNKK-----HSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERD 334 (450)
Q Consensus 272 ~~~dg~i~vwd~~-------~~~~-~~~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~ 334 (450)
-..++.|..+|+. ++.. ..... ...+... ........|+|+|+|++|+.+ +....|+.++..
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 8888899999986 3321 00000 0001111 123456889999999965555 456788886654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.046 Score=47.02 Aligned_cols=148 Identities=7% Similarity=0.099 Sum_probs=76.5
Q ss_pred CCCEEEEEeCC----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------CcEEEEeCcchhhhc
Q 041325 221 DGSLLYSTSWD----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKKLRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~ 290 (450)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||..+.+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 56667777654 5688899887653322211111122223333 55577777655 458889987655221
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---------CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---------DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
+..+.........+.+ ++++++.|+. -..+.+||+.+.+... ...+......
T Consensus 133 ------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-----------~~~~p~~r~~ 193 (306)
T 3ii7_A 133 ------KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-----------LCPMIEARKN 193 (306)
T ss_dssp ------ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-----------ECCCSSCCBS
T ss_pred ------CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-----------CCCccchhhc
Confidence 1111111122222222 6677777764 3458899988765431 1111111112
Q ss_pred eEEEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 362 ILCLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
-.++...+.+++.|+.+ ..+.+||+.+.
T Consensus 194 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 194 HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CEEEEETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 23333445566666653 35788888753
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.047 Score=46.79 Aligned_cols=173 Identities=7% Similarity=0.059 Sum_probs=102.8
Q ss_pred EecCCCceEEEEEeC--CeEEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLG--DKLFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~--~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
+.....--.+++|.+ ..++.++ ..++|..|+...+.... + .++.... .
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--------------~-~~~~~s~-------~------- 58 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--------------V-VIDGASS-------N------- 58 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--------------E-CCTTTCC-------S-------
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--------------E-ecCCccc-------c-------
Confidence 344445566788886 3466665 68999999987552211 1 1110000 0
Q ss_pred ecceeeeecCCCceEEEEE---ccCCCEEEEEe-------------CCCcEEEEecC---CCeEEEEeecc---------
Q 041325 200 RHKKCTWVHHVDTVSALAL---SSDGSLLYSTS-------------WDRTFKIWRTS---DFRCLESVKNA--------- 251 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~-------------~dg~i~iwd~~---~~~~~~~~~~~--------- 251 (450)
......+..+.+ .++++++++.. .+..|..||+. +++.+......
T Consensus 59 -------g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~ 131 (334)
T 2p9w_A 59 -------GDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKK 131 (334)
T ss_dssp -------SCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHH
T ss_pred -------CCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccc
Confidence 000113578888 68877776543 26789999999 77766555411
Q ss_pred ---cccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 252 ---HDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 252 ---~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
.....+.++..+.++ ..++++.. +.|..++....... .+.............+.|+++|+|+.|++...+|.
T Consensus 132 ~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~~~---~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~ 207 (334)
T 2p9w_A 132 AGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKTVS---TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA 207 (334)
T ss_dssp HSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCCEE---EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS
T ss_pred ccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCEEe---eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe
Confidence 113578899987444 56666666 77666665432100 00000000112234678999999999888877999
Q ss_pred EEEEEcCC
Q 041325 328 ILVWERDQ 335 (450)
Q Consensus 328 i~vwd~~~ 335 (450)
|..+|+..
T Consensus 208 L~~fD~~~ 215 (334)
T 2p9w_A 208 LTAFDVSK 215 (334)
T ss_dssp EEEEECSS
T ss_pred EEEEcCCC
Confidence 99999884
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.052 Score=46.71 Aligned_cols=147 Identities=10% Similarity=0.116 Sum_probs=77.5
Q ss_pred CCCEEEEEeCC------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC---------CCcEEEEeCcc
Q 041325 221 DGSLLYSTSWD------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---------DTKIKVWKKLR 285 (450)
Q Consensus 221 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~ 285 (450)
++++++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 56677777654 4688999887653322111111122223333 4556666653 34588899877
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.+.. .+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+... ...+.....
T Consensus 179 ~~W~------~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~-----------~~~~p~~r~ 239 (306)
T 3ii7_A 179 ETWT------ELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-----------VSPMPWKGV 239 (306)
T ss_dssp TEEE------EECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEE-----------CCCCSCCBS
T ss_pred CeEE------ECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE-----------CCCCCCCcc
Confidence 6532 12112111122222233 67777777654 458899988765431 111111122
Q ss_pred ceEEEEEeCCeEEEEeCC-----CeEEEeeCCC
Q 041325 361 AILCLAVVSNLLFSGSSD-----NTIRIWRRSS 388 (450)
Q Consensus 361 ~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~ 388 (450)
...++...+.+++.|+.+ ..+.+||..+
T Consensus 240 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 240 TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp CCEEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 223444455677777754 4688888875
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.1 Score=49.88 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=128.6
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
+|+-+ ..+.|+.-++++....... ....-..+..|+|.+.. +++-..++.|..++++.......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~-----------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v- 74 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAI-----------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV- 74 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEEC-----------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-
T ss_pred EEEEE-eCCcEEEEECCCCCcceEE-----------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE-
Confidence 44444 3467888888765432220 11223467889998533 44445578888888765421100
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 242 (450)
+. ........+++.+.+ ++.++-...+.|.+.++...
T Consensus 75 ---------------~~---------------------------~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 75 ---------------VE---------------------------FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp ---------------EC---------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred ---------------Ee---------------------------CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 00 011245678888754 44555556788999998754
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEE-cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTG-SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
.....+. ........|++.|..+.++++- +..+.|...++.... ...+...-.....|+++++++.|+.
T Consensus 113 ~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---------~~~l~~~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 113 HRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---------RTTLVPNVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp TCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---------CEEEECSCSSEEEEEEETTTTEEEE
T ss_pred cEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---------eEEEECCCCCcceEEEccccCEEEE
Confidence 3222222 3445678999998555444443 235677777765432 1111113456789999997776666
Q ss_pred ee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe-CCCeEEEeeCCCC
Q 041325 322 GA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS-SDNTIRIWRRSSS 389 (450)
Q Consensus 322 g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~~ 389 (450)
+. ..+.|..+|+...... . +...-....++++.++.|+... ..+.|...|..++
T Consensus 183 aD~~~~~I~~~d~dG~~~~-----------v---~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGLNRE-----------V---IADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EETTTTEEEEEETTSCSCE-----------E---EEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCEEEEEcCCCCceE-----------E---eeccCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence 65 4678999998753211 1 1111223457777766555444 5788888887654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.018 Score=56.58 Aligned_cols=154 Identities=12% Similarity=0.156 Sum_probs=80.4
Q ss_pred EEEEEccCCCEEEEEeCC-----CcEEEEecCCCeE--EEEeecccccceEEEEEeecCCcEEEEEcC--CCcEEEEeCc
Q 041325 214 SALALSSDGSLLYSTSWD-----RTFKIWRTSDFRC--LESVKNAHDDAINAIVVSKSNDGFVYTGSA--DTKIKVWKKL 284 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~ 284 (450)
..++|+||++.|+....+ ..|..+++.++.. ...+..........+.|+|++..++++... ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 457899999888777654 3688888876532 222221233445678899876644444432 4467888886
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCCceeeeCCCCCCceeeecc-ccCCc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQGNYIVDGDDDSGHMVLKGA-LRGHT 359 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 359 (450)
++.. ................++.|+.++.+++....+ ..|..+|+.++... .. +..+.
T Consensus 304 ~~~~----~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-------------~~~li~~~ 366 (751)
T 2xe4_A 304 KGNA----HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW-------------SHVLVDHS 366 (751)
T ss_dssp SCTT----CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC-------------CCEEECCC
T ss_pred CCCC----CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc-------------eeeEECCC
Confidence 5420 000011111223444556555433344444333 35666776542100 11 11122
Q ss_pred --cceEEEEEeCC-eEEEEeCCCeEEEe
Q 041325 360 --KAILCLAVVSN-LLFSGSSDNTIRIW 384 (450)
Q Consensus 360 --~~v~~~~~~~~-~l~s~~~dg~v~iw 384 (450)
..+..+.+.++ ++++...++..++|
T Consensus 367 ~~~~l~~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 367 EDVFMESIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp SSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred CCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 24556676666 55666777764444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.077 Score=45.95 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=113.7
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC---Cc---E-EEEEcC--CCcEEEEeCc--chhhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN---DG---F-VYTGSA--DTKIKVWKKL--RAALQ 289 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~---~-l~~~~~--dg~i~vwd~~--~~~~~ 289 (450)
...+++.....+-+.+||+ +++.+..+. .+.++.+..-|.- .. + +++.-. ++.|.+|++. ++..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l- 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL- 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE-
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce-
Confidence 4556777778889999999 788888875 2567777776511 11 2 333333 5889999763 2221
Q ss_pred ccccchhhhh----HhhcccceEEEEE--cCC-CC-EEEEeeCCCcEEEEEcCC---CceeeeCCCCCCceeeeccccCC
Q 041325 290 VNKKHSLVQT----LEKHKSAVTALAL--STD-GT-VLYSGACDRSILVWERDQ---GNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 290 ~~~~~~~~~~----~~~~~~~i~~l~~--~~~-~~-~l~~g~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
..+.. +......+..+++ +|. ++ ++++...+|.+..|++.. ++. .....+.+..
T Consensus 114 -----~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~---------~~~lVR~f~l- 178 (355)
T 3amr_A 114 -----QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI---------SGKKVRAFKM- 178 (355)
T ss_dssp -----EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE---------EEEEEEEEEC-
T ss_pred -----eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc---------cceEEEEecC-
Confidence 11111 0011145667777 674 43 688888899999999843 211 1112233332
Q ss_pred ccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEec-CC-CcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 359 TKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE-GH-RRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 359 ~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
...+-.+..++ ..|+.+-++..|..++.+... ....+.+..+. ++ ...+..|+.-+... +.+.+
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~---~~~~~~v~~~~~g~l~aDvEGLai~~~~~---------g~gyL 246 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDG---GSNGTVIDRADGRHLTRDIEGLTIYYAAD---------GKGYL 246 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTS---CSCCEEEEEBSSSSBCSCEEEEEEEECGG---------GCEEE
T ss_pred CCCcceEEEcCCCCeEEEecccceEEEEeCCcCC---CCCceEEEEecCCccccCcceEEEEecCC---------CCEEE
Confidence 23566777774 489999998666555544210 11124444442 22 24688888854431 11225
Q ss_pred EEEcccCCcEEEEEe
Q 041325 435 VYSGSLDCEIKIWQI 449 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l 449 (450)
++++=.+.+..+||.
T Consensus 247 ivSsQG~~s~~Vydr 261 (355)
T 3amr_A 247 MASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEGGGTEEEEEES
T ss_pred EEEcCCCCEEEEEEC
Confidence 555557788999986
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.086 Score=45.52 Aligned_cols=149 Identities=7% Similarity=0.090 Sum_probs=76.1
Q ss_pred cCCCEEEEEeC-----C------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--------CcEEE
Q 041325 220 SDGSLLYSTSW-----D------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--------TKIKV 280 (450)
Q Consensus 220 ~~~~~l~~~~~-----d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~v 280 (450)
.++.+++.|+. . ..+..||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEE
Confidence 46777777773 1 1277888887653221111111111223333 55566666632 45888
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C-----CcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D-----RSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
||..+.+.. .+..+.........+. -++++++.|+. + ..+.+||..+.+... ...
T Consensus 122 ~d~~~~~W~------~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-----------~~~ 182 (315)
T 4asc_A 122 YDRLSFKWG------ESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-----------LAP 182 (315)
T ss_dssp EETTTTEEE------ECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-----------CCC
T ss_pred ECCCCCcEe------ECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-----------CCC
Confidence 998765422 1212211112222222 26677777776 2 468899988765431 111
Q ss_pred ccCCccceEEEEEeCCeEEEEeCCC-----eEEEeeCCCC
Q 041325 355 LRGHTKAILCLAVVSNLLFSGSSDN-----TIRIWRRSSS 389 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~~l~s~~~dg-----~v~iwd~~~~ 389 (450)
+......-.++...+.+++.|+.++ .+.+||+.+.
T Consensus 183 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 183 MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 1111112233444566667776654 4788888753
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.11 Score=46.15 Aligned_cols=201 Identities=10% Similarity=0.120 Sum_probs=122.3
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.+.-.+|..+.++.-. ..++.++|+++...+..+. ....|.-=.|. ....|+..+ +..|+-|++.... ...+-
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s-~P~kv 141 (494)
T 1bpo_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGES-QPVKM 141 (494)
T ss_dssp SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSC-CCEEE
T ss_pred ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEec--CCCeEEEEc-CCeeEEecccCCC-Cchhh
Confidence 3455778777777665 7899999999999998887 45567776777 344555444 3579999986522 10011
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEee-------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGA-------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
......+ ....|..-..+++.++++..+ -.|.+.+|..+.+ ..+.+.+|...-..+.
T Consensus 142 FdR~~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--------------~sQ~ieGhaa~F~~~~ 205 (494)
T 1bpo_A 142 FDRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------------VSQPIEGHAASFAQFK 205 (494)
T ss_dssp EECCGGG--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--------------CEEEECCSEEEEEEEE
T ss_pred eecchhc--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--------------ccchheeeeeeeEEEe
Confidence 1111122 246677778888998877543 2477889988754 2356677766655555
Q ss_pred EeCC-----eEEEEeC---CCeEEEeeCCCCc-cccCCCceeEEEe---cCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 367 VVSN-----LLFSGSS---DNTIRIWRRSSSV-TDHQKGYSCLAVL---EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 367 ~~~~-----~l~s~~~---dg~v~iwd~~~~~-~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
..++ +++-+.. .+.+.|-++.... ....-..+.+..+ ..-.+--.++..++... +
T Consensus 206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-------------v 272 (494)
T 1bpo_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------V 272 (494)
T ss_dssp CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-------------E
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-------------E
Confidence 5543 3333333 2789999986431 1111111122211 11233345667777666 7
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
+..-..-|.|++||++
T Consensus 273 iyviTK~G~i~lyDle 288 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLE 288 (494)
T ss_dssp EEEEETTSEEEEEETT
T ss_pred EEEEecCceEEEEecc
Confidence 8888889999999974
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.032 Score=47.89 Aligned_cols=146 Identities=8% Similarity=0.174 Sum_probs=76.6
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCe-----EEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcc
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFR-----CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLR 285 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~ 285 (450)
++.+++.|+.+ ..+.+||..+.+ .+..+. ....-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p--~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN--VRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS--SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC--CCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence 46667777654 468899987755 222222 11122233333 45566676643 3578888876
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.+... +..+.........+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+.....
T Consensus 138 ~~W~~------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-----------~~~p~~r~ 198 (301)
T 2vpj_A 138 DQWSM------LGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-----------TPMATKRS 198 (301)
T ss_dssp TEEEE------EEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-----------CCCSSCCB
T ss_pred CeEEE------CCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-----------CCCCcccc
Confidence 54221 1111111112222223 67777777754 4588999887654321 11111111
Q ss_pred ceEEEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 361 AILCLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 361 ~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
...++.+.+.+++.|+.+ ..+.+||+.+.
T Consensus 199 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 199 GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 223344455566777664 46889998853
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0024 Score=62.02 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=87.9
Q ss_pred ceEEEEEccCCCEEEEE-eCCCcEEEEecCC----CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 212 TVSALALSSDGSLLYST-SWDRTFKIWRTSD----FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+..++|++.+..|+.+ ...+.|+.+++.. ......+. ........|++.+..+.++++-...+.|.++++...
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 46678899866555554 4567899999875 22222221 122345667777656666677677788999997643
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.. ...+.........|+++|.+.+|+.... . +.|.++++...... .+ ....-.....
T Consensus 486 ~~--------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~----------~l---~~~~l~~PnG 544 (699)
T 1n7d_A 486 KR--------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----------SL---VTENIQWPNG 544 (699)
T ss_dssp CE--------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC----------EE---SCSSCSSCCC
T ss_pred ce--------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee----------EE---EeCCCCCccE
Confidence 21 1111111234577899986665555443 2 67777776532111 00 0111123456
Q ss_pred EEEeC--C-eEEEEeCCCeEEEeeCCC
Q 041325 365 LAVVS--N-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 365 ~~~~~--~-~l~s~~~dg~v~iwd~~~ 388 (450)
|++++ . ++++-+..+.|..+++..
T Consensus 545 lavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred EEEeccCCEEEEEecCCCeEEEEccCC
Confidence 77763 3 555556678899999864
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.015 Score=49.87 Aligned_cols=172 Identities=10% Similarity=0.038 Sum_probs=97.0
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh------cccceEEEEE---cCCCCEEEEe
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK------HKSAVTALAL---STDGTVLYSG 322 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~~~i~~l~~---~~~~~~l~~g 322 (450)
......+++|++....++++.-..+.|..||...+... .+ .+.. ....+..|.| .|+++++++.
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~------~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~ 83 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF------NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVM 83 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE------EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE------EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEE
Confidence 34456778898755545555558999999998643210 11 1111 1124578999 6888777754
Q ss_pred e-------------CCCcEEEEEcC---CCceeeeCCCCCCceeeeccccC-CccceEEEEEe--CCeEEEEeCC-CeEE
Q 041325 323 A-------------CDRSILVWERD---QGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVV--SNLLFSGSSD-NTIR 382 (450)
Q Consensus 323 ~-------------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~d-g~v~ 382 (450)
. .+..|..||+. +++.+............ ....+ -......++.+ |+..++++.. +.|.
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~-~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEF-EKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA 162 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHH-HHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccc-cccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence 4 26789999998 66654211100000000 00001 11235677776 5677777777 7766
Q ss_pred EeeCCCCccccCCCceeEEE-e--cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 383 IWRRSSSVTDHQKGYSCLAV-L--EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~-~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..+.... ....... . .......+.|+++|++. +|+....+|.|.-+|++
T Consensus 163 rV~pdG~------~~~~~~~~~~~~~~~~G~nGIv~~pdg~-------------~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 163 RVSADGK------TVSTFAWESGNGGQRPGYSGITFDPHSN-------------KLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EECTTSC------CEEEEEECCCCSSSCCSCSEEEEETTTT-------------EEEEESSSSSEEEEECS
T ss_pred EEeCCCC------EEeeeeecCCCcccccCcceEEEeCCCC-------------EEEEEcCCCeEEEEcCC
Confidence 6655421 1111110 0 11122367999999998 66666669999888864
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.19 Score=44.16 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=15.8
Q ss_pred EEeCCEEEEeeCC-CcEEEecCCC
Q 041325 82 AIAGKLLYGGSSN-GEIRAWNRDP 104 (450)
Q Consensus 82 ~~d~~~l~tgs~d-g~v~vw~~~~ 104 (450)
.+++.+++.|+.+ ..+.++|...
T Consensus 17 ~~~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 17 IDNDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp EETTEEEEECGGGTTCEEEEETTS
T ss_pred EECCEEEEEeCcCCCeEEEEcccc
Confidence 3477777777654 4688888864
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.32 Score=46.54 Aligned_cols=154 Identities=16% Similarity=0.061 Sum_probs=96.5
Q ss_pred ceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+..++|++....+ ++-..++.|..+++........+. ........+++.+..++++++-...+.|.+.++......
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~- 115 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ- 115 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-
Confidence 57889999855554 455567899999987544333333 233457788888766767788788889999997543210
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
.+ ....-.....|++.|...+|+.... .+.|...++...... .+. ..-.....++++
T Consensus 116 -----~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~----------~l~----~~~~~P~GlalD 174 (628)
T 4a0p_A 116 -----VL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT----------TLV----PNVGRANGLTID 174 (628)
T ss_dssp -----EE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE----------EEE----CSCSSEEEEEEE
T ss_pred -----EE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE----------EEE----CCCCCcceEEEc
Confidence 01 1122345689999986556665542 467777777643211 111 123345778887
Q ss_pred C--C-eEEEEeCCCeEEEeeCCC
Q 041325 369 S--N-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 369 ~--~-~l~s~~~dg~v~iwd~~~ 388 (450)
. + +.++=...+.|...|+..
T Consensus 175 ~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 175 YAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCEEEEEECCCCEEEEEcCCC
Confidence 3 3 444445667899999874
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.083 Score=45.48 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCEEEEEeC----C-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcch
Q 041325 221 DGSLLYSTSW----D-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLRA 286 (450)
Q Consensus 221 ~~~~l~~~~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 286 (450)
++.+++.|+. + ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4556666654 2 4688899887653222111111111223333 45566666643 35788888765
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
+... +..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+......
T Consensus 148 ~W~~------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-----------~~~p~~r~~ 208 (308)
T 1zgk_A 148 EWHL------VAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-----------TAMNTIRSG 208 (308)
T ss_dssp EEEE------CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-----------CCCSSCCBS
T ss_pred eEeE------CCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-----------CCCCCcccc
Confidence 5321 1111111222222333 67777777754 4588999887654321 111111112
Q ss_pred eEEEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 362 ILCLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
-.++.+.+.+++.|+.+ ..+.+||+.+.
T Consensus 209 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 209 AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 23344455566777654 45889998853
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.26 Score=43.14 Aligned_cols=182 Identities=9% Similarity=0.083 Sum_probs=96.9
Q ss_pred ceEEEEEccCCCEEEEE------------eCCCcEEEEecCC--CeEEEEeec-c-----cccceEEEEEeec--CCcE-
Q 041325 212 TVSALALSSDGSLLYST------------SWDRTFKIWRTSD--FRCLESVKN-A-----HDDAINAIVVSKS--NDGF- 268 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~--~~~~~~~~~-~-----~~~~v~~~~~~~~--~~~~- 268 (450)
...+++..++|..++++ ..+|.|.++|..+ .+. ..+.. + .......+.+.++ +...
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45567778877555544 1689999999874 222 22221 1 2346777887663 2223
Q ss_pred EEEEcC--CCcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeC-----------------CCcE
Q 041325 269 VYTGSA--DTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGAC-----------------DRSI 328 (450)
Q Consensus 269 l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~-----------------dg~i 328 (450)
+++-.. +..|.+|++.... .....+..+.+ .-...+.+.+.++|.+.++... .|.|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~----~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEE----KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTT----TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEECCCCCCeEEEEEEECCC----CEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 444333 5678888876532 11122223222 1245788999999987776541 2344
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--e-EEEEeCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--L-LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
..+|.. +. ..+...-..-+.++|+++ . .++-+..+.|..|++... ........+.
T Consensus 206 yr~d~~--~~--------------~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-----g~l~~~~~~~- 263 (355)
T 3sre_A 206 TYYSPN--DV--------------RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-----WTLTPLRVLS- 263 (355)
T ss_dssp EEECTT--CC--------------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-----SCEEEEEEEE-
T ss_pred EEEECC--eE--------------EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC-----CcEecCEEEe-
Confidence 444432 10 011111233478888855 4 445556789999998642 1112222221
Q ss_pred CCcceEEEEEEe-cCC
Q 041325 406 HRRPVKCLTAVV-DSD 420 (450)
Q Consensus 406 h~~~v~~l~~~~-~~~ 420 (450)
..+..-.+++.+ +|.
T Consensus 264 ~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 264 FDTLVDNISVDPVTGD 279 (355)
T ss_dssp CSSEEEEEEECTTTCC
T ss_pred CCCCCceEEEeCCCCc
Confidence 234556677766 366
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.17 Score=44.95 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=94.0
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc---ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH---DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
...+|..++.+- ++.||.-++......+.+...+ ...+..+..+|++. +|+..+ +..|.|..+..+........
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccc
Confidence 344666666665 5889988887544444444332 33678899998444 555554 46789988864321111000
Q ss_pred --hhh--hhHh------hcccceEEEEEcC---CCCEEEEeeCCCcEEEEEcCCCcee-eeCCCCCCceeeeccccCCcc
Q 041325 295 --SLV--QTLE------KHKSAVTALALST---DGTVLYSGACDRSILVWERDQGNYI-VDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 295 --~~~--~~~~------~~~~~i~~l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 360 (450)
..+ +.+. ....+|..+.|+| ++..|++-..|+.|++||+...... ..+..... .........
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~----~fg~d~~~~ 180 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNN----SFGLDARVN 180 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCS----EEESCSSCC
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcccc----ccCCCcccc
Confidence 000 0111 1257799999999 4568999999999999999862210 01111100 012233446
Q ss_pred ceEEEEEeCC----eEEEEeCCCeEEEe
Q 041325 361 AILCLAVVSN----LLFSGSSDNTIRIW 384 (450)
Q Consensus 361 ~v~~~~~~~~----~l~s~~~dg~v~iw 384 (450)
.|.+++|.++ |+++.+..|-|+-.
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 7889999865 45555677887643
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.3 Score=42.10 Aligned_cols=150 Identities=7% Similarity=0.134 Sum_probs=73.3
Q ss_pred ccCCCEEEEEeC----CC-------cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-------CcEEE
Q 041325 219 SSDGSLLYSTSW----DR-------TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-------TKIKV 280 (450)
Q Consensus 219 ~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~v 280 (450)
..++.+++.|+. ++ .+..||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence 345677777762 11 277888877653322111111122233333 45566666653 34778
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC------CCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC------DRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
||..+.+... +..+......-..+. .++++++.|+. -..+.+||..+.+.... ..
T Consensus 132 yd~~~~~W~~------~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-----------~~ 192 (318)
T 2woz_A 132 YDPVAAKWSE------VKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL-----------AP 192 (318)
T ss_dssp EETTTTEEEE------ECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE-----------CC
T ss_pred EeCCCCCEeE------CCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC-----------CC
Confidence 8887654221 111111111112222 36777777764 23589999987654321 11
Q ss_pred ccCCccceEEEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 355 LRGHTKAILCLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
+......-.++...+.+++.|+.+ ..+.+||+.+.
T Consensus 193 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 193 MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 111111123334455566666643 34678888753
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.35 Score=41.66 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=58.0
Q ss_pred CCCEEEEEeCC--------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC-C-----CcEEEEeCcch
Q 041325 221 DGSLLYSTSWD--------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-D-----TKIKVWKKLRA 286 (450)
Q Consensus 221 ~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~ 286 (450)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+. + ..+.+||..+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 45666666632 4588899987653221111111122223333 5557777765 2 46888998765
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-----cEEEEEcCCCcee
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-----SILVWERDQGNYI 339 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-----~i~vwd~~~~~~~ 339 (450)
+.. .+..+.........+.+ ++++++.|+.++ .+.+||+.+.+..
T Consensus 176 ~W~------~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 176 EWK------ELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EEE------ECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred eEE------ECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 532 12222111122222333 677788887654 4888998876543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.62 Score=44.45 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=110.9
Q ss_pred cceEEEEEe--CC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--CeEE-EEeCCCeE
Q 041325 76 SYIPSLAIA--GK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--DKLF-SAHQDHKI 149 (450)
Q Consensus 76 ~~v~~~~~d--~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~~~dg~i 149 (450)
.....|+|+ +. ++++=...+.|..++++....... .....-.....|++.. +.|+ +-...+.|
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~-----------v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I 108 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----------VVVSGLLSPDGLACDWLGEKLYWTDSETNRI 108 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE-----------EECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE-----------EEeCCCCCcCeEEEEecCCEEEEEeCCCCEE
Confidence 446677773 44 444444567788888765431111 1222224677888874 3344 44556888
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+.+++........ ...-.....|+++|.+..|+...
T Consensus 109 ~v~~~dG~~~~~l~-------------------------------------------~~~l~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 109 EVSNLDGSLRKVLF-------------------------------------------WQELDQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp EEEETTSCSCEEEE-------------------------------------------CSSCSCCCCEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEE-------------------------------------------eCCCCCCceEEEecCCCeEEEec
Confidence 88888765211000 01222467889998655555444
Q ss_pred C--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 230 W--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 230 ~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
. .+.|...++.... ...+........+.|++.+..+.+.++-...+.|..+|+..... ..... +.....
T Consensus 146 ~g~~~~I~r~~~dG~~-~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-----~~~~~---~~~~~P 216 (619)
T 3s94_A 146 WGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----QAVVK---GSLPHP 216 (619)
T ss_dssp CSSSCEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-----C------------C
T ss_pred cCCCCEEEEEECCCCc-eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-----EEEEe---CCCCCc
Confidence 3 4567777765332 22232133456789999986676777777788899999865331 01111 112223
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
..|++..+ .+.++-...+.|...|..+++..
T Consensus 217 ~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 217 FALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp CCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred eEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 56777654 44445456788999998877644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.34 Score=50.02 Aligned_cols=196 Identities=10% Similarity=0.134 Sum_probs=112.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+.-.+|..+.++.-. ..++.|+|+++...+..+. ....|.-=.|. ....|+..+. ..|..|++....
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWi--s~~~l~lVT~-~aVyHW~~~~~s------- 136 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGES------- 136 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEec--CCCeeEEEcC-CeEEEeccCCCC-------
Confidence 445677777666654 7899999999988888776 44566666666 4445444443 569999995421
Q ss_pred hhhhhHhhc----ccceEEEEEcCCCCEEEEee-------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 295 SLVQTLEKH----KSAVTALALSTDGTVLYSGA-------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 295 ~~~~~~~~~----~~~i~~l~~~~~~~~l~~g~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.+.+.+..| ...|..-..+++.++++..+ ..|.+.+|..+.+. .+.+.||...-.
T Consensus 137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--------------sQ~iegha~~F~ 202 (1630)
T 1xi4_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--------------SQPIEGHAASFA 202 (1630)
T ss_pred ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--------------chhhhHhHhhhh
Confidence 244444444 45677777888888877543 35788888887542 244555554444
Q ss_pred EEEEeCC-----eEEEEeC---CCeEEEeeCCCC-ccccCCCceeEEEe---cCCCcceEEEEEEecCCCCCCCCCCCCc
Q 041325 364 CLAVVSN-----LLFSGSS---DNTIRIWRRSSS-VTDHQKGYSCLAVL---EGHRRPVKCLTAVVDSDYSNRNSDHSST 431 (450)
Q Consensus 364 ~~~~~~~-----~l~s~~~---dg~v~iwd~~~~-~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 431 (450)
.+...++ +++.+.. .+.+.|-++... .....-..+.+..+ ..-..-..++..++...
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g----------- 271 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD----------- 271 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-----------
Confidence 4433322 2221111 268888888643 10000000111111 11122233445555544
Q ss_pred eEEEEEcccCCcEEEEEeC
Q 041325 432 SFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 432 ~~~l~s~~~Dg~i~iw~l~ 450 (450)
++..-+.-|.|+++|+.
T Consensus 272 --~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 272 --VVFLITKYGYIHLYDLE 288 (1630)
T ss_pred --EEEEEecCceEEEEecc
Confidence 67777788999999873
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.017 Score=50.09 Aligned_cols=127 Identities=8% Similarity=0.036 Sum_probs=69.4
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEE--eCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSA--HQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~--~~dg~i~iw~~~~~~~~~~ 162 (450)
+.+++.++.||.|.-.|.++++........ ...+.+...+.... ..+.++.+ ..||.|..++..++.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 557889999999999999999987775443 00111111111110 12234444 5799999999877632111
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE-EEEEccCCCEEEEEeCCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS-ALALSSDGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (450)
..... +.. ...+.....+|. ..--...+..+++|+.+|.+...|+.+
T Consensus 83 ~~~~~-----------lv~---------------------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t 130 (339)
T 2be1_A 83 LSIRQ-----------LVS---------------------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN 130 (339)
T ss_dssp EEHHH-----------HHT---------------------TCSEEEECC----------CCEEEEECEEEEEEEEEETTT
T ss_pred ecccc-----------cee---------------------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC
Confidence 10000 000 000000001110 000001355788999999999999999
Q ss_pred CeEEEEeec
Q 041325 242 FRCLESVKN 250 (450)
Q Consensus 242 ~~~~~~~~~ 250 (450)
|+.+..+..
T Consensus 131 G~~~W~~~~ 139 (339)
T 2be1_A 131 GEIISAFGP 139 (339)
T ss_dssp CCEEEEEST
T ss_pred CcEEEEEec
Confidence 999998873
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.057 Score=47.85 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=79.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCe------------EEEEeecc-----cccceEEEEEeecCCc--EEEEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFR------------CLESVKNA-----HDDAINAIVVSKSNDG--FVYTG 272 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~-----~~~~v~~~~~~~~~~~--~l~~~ 272 (450)
.+..+..+|+|++||..+ +..|.|-.+..+. ..+.+..+ ...+|..+.|+|.... .|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 467799999999999887 5688888887321 11223211 2467999999986544 79999
Q ss_pred cCCCcEEEEeCcchhhhccccchhh---hhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEE
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLV---QTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWE 332 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd 332 (450)
..|+.|++||+........ ..... ..+......|.+++|.+++-.|...+ .+|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999999999986331110 00000 01112236789999999887777754 788887643
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.62 Score=41.57 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=90.7
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCC-----------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDF-----------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
+..++++.-....+.-..||.|..|-.... .....+.......|..|+.- ....++-..+|.|..|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 444566555566666677888888854321 11122221122356666653 4466666789999999
Q ss_pred eCcch-hhhcc-----ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 282 KKLRA-ALQVN-----KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 282 d~~~~-~~~~~-----~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
-.... ++... .....+..+ ....|..++......+.++-..||.|+.|-....-.+-.... .....+....
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~ 260 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS-DGCKVPMKID 260 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC-CCEEEEEECG
T ss_pred CCCCCCCcCCCCCcccccceEeccc--CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC-CCccccEEec
Confidence 75432 11000 011111122 234566777654335666777899999997653221110000 0111111111
Q ss_pred cCCccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 356 RGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
......|..++....+.+.-..||.|+.|=..
T Consensus 261 ~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 261 SLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp GGTTSCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred ccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCC
Confidence 11223577888777777777899999999654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.51 Score=40.63 Aligned_cols=109 Identities=8% Similarity=0.144 Sum_probs=56.3
Q ss_pred CCCEEEEEeCC-------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC------CCcEEEEeCcchh
Q 041325 221 DGSLLYSTSWD-------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA------DTKIKVWKKLRAA 287 (450)
Q Consensus 221 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~ 287 (450)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+. -..+.+||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE--TTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE--CCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 56667777653 3578888887653322111111111222232 5556666654 2358899987765
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCcee
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYI 339 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~ 339 (450)
... +..+.........+.+ ++++++.|+.+ ..+.+||+.+.+..
T Consensus 187 W~~------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 187 WKD------LAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEE------ECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEE------CCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 321 1111111122222333 66777777653 34778888876543
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.78 Score=42.09 Aligned_cols=171 Identities=6% Similarity=0.046 Sum_probs=89.9
Q ss_pred ceEEEEEcc-C-CCEEEEEeCCCcEEEEecCCCeEEEEeecc--cccceEEEEE-------eecCCcEEEEEcCCC----
Q 041325 212 TVSALALSS-D-GSLLYSTSWDRTFKIWRTSDFRCLESVKNA--HDDAINAIVV-------SKSNDGFVYTGSADT---- 276 (450)
Q Consensus 212 ~v~~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~l~~~~~dg---- 276 (450)
....|+|+| + ++++++-...+.|++.|+.++......... .......++| .+.++.++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 3 444444444578999999887766554421 1235889999 875553444444432
Q ss_pred --cEEEEeCcc-hhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcC-------CCceeeeC-CC
Q 041325 277 --KIKVWKKLR-AALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERD-------QGNYIVDG-DD 344 (450)
Q Consensus 277 --~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~-------~~~~~~~~-~~ 344 (450)
.|.+++... +........ ..+.. -.....++++|+ +.++++-..++.|..+|+. ++..-... ..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~---~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDI---QLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCE---EEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccc---eeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255665322 111000000 11111 234567889994 5555566678889999997 44420000 00
Q ss_pred CCCceeeeccccCCccceEEEEEeC--Ce-EEEEeCCCeEEEeeCC
Q 041325 345 DSGHMVLKGALRGHTKAILCLAVVS--NL-LFSGSSDNTIRIWRRS 387 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~s~~~dg~v~iwd~~ 387 (450)
........... +....-..+++++ ++ +++-.....|+.++..
T Consensus 296 ~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 00000000111 1223446788874 44 4455567788886654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.78 Score=40.94 Aligned_cols=200 Identities=11% Similarity=0.134 Sum_probs=107.0
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCeEEEEeCCCeEEEEEcCCCceeEEec
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDKLFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
+.||-=. ..++.|+|+++...+.... - ...|.-=.|- ++.|+-.+ +..|.-|+++.....
T Consensus 78 ~iiALra-g~~lQiFnle~K~klks~~------------~-~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P---- 138 (494)
T 1bpo_A 78 KVIALKA-GKTLQIFNIEMKSKMKAHT------------M-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQP---- 138 (494)
T ss_dssp SCEEEEE-TTEEEEEETTTTEEEEEEE------------C-SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCC----
T ss_pred cEEEEec-CCeEEEEchHHhhhhccee------------c-CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCc----
Confidence 3444333 4678888888877555422 1 2356666665 44444443 356888888653210
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-------CCCcEEEE
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-------WDRTFKIW 237 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~iw 237 (450)
.+.+.+...+ ....|..-..+++.++++..+ -.|.+.+|
T Consensus 139 -----~kvFdR~~~L-----------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 139 -----VKMFDRHSSL-----------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp -----EEEEECCGGG-----------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred -----hhheecchhc-----------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence 0000110010 123455556677777766443 24778999
Q ss_pred ecCCCeEEEEeecccccceEEEEEeec--CCcEEEEEcC---CCcEEEEeCcch-hhhccccchhhh---hHhhcccceE
Q 041325 238 RTSDFRCLESVKNAHDDAINAIVVSKS--NDGFVYTGSA---DTKIKVWKKLRA-ALQVNKKHSLVQ---TLEKHKSAVT 308 (450)
Q Consensus 238 d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~---dg~i~vwd~~~~-~~~~~~~~~~~~---~~~~~~~~i~ 308 (450)
..+.+. .+.+. +|...-..+..... ...+++.+.. .+.+++.++... .-...-..+.+. .-+...+-..
T Consensus 185 S~er~~-sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 185 SVDRKV-SQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp ESTTCC-EEEEC-CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred eccccc-cchhe-eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 987543 23333 55444333332210 1113333333 278999998543 100000000000 0112234456
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
++..++.-..++.-+.-|.|++||+.++.+++
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEecccCCEEEEEecCceEEEEecccceeee
Confidence 78888888889999999999999999999873
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.85 E-value=2 Score=44.29 Aligned_cols=271 Identities=11% Similarity=0.098 Sum_probs=140.6
Q ss_pred EEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC------CeEEEEe---CCCe
Q 041325 79 PSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG------DKLFSAH---QDHK 148 (450)
Q Consensus 79 ~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~~---~dg~ 148 (450)
.|+++ ++.+|+.|+..|.=.+|.+...... .......+.-...-++|.+++... ..+++++ .+|.
T Consensus 330 ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~-----~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 330 ECLTYLDNGVVFVGSRLGDSQLVKLNVDSNE-----QGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGS 404 (1158)
T ss_dssp SEEEECSTTEEEEECSSSCEEEEEECSSCCT-----TSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCE
T ss_pred cEEEEECCCEEEEEEecCCcEEEEEecCCCC-----ccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCe
Confidence 55666 6779999999888777776543210 000001112234456888888752 2355443 4688
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCC----CcceeEeeecCceEEEe--ecceeeeecCCCceEEEEEccCC
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTL----NDRFTKCFLANNYVQVR--RHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
+++..-.-+....... ..+ ....+.++... .+.+.++...+....+. ....... . .-.|..+.
T Consensus 405 L~~lr~Gi~~~~~~~~--~l~--gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev-~------~~gf~~~~ 473 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHASI--DLP--GIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEET-E------LMGFVDDQ 473 (1158)
T ss_dssp EEEEEESBCEEEEEEE--CCC--SCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEE-C------CTTCCSSS
T ss_pred EEEEecCCCEEEEEee--cCC--CccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCccccc-c------cccccCCC
Confidence 8887654432221111 111 11334444321 23333333333332221 1111111 0 00122233
Q ss_pred CEEEEEeC---------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 223 SLLYSTSW---------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 223 ~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
..|+++.. ...|++.+......+..+.......|...+.+ +. .++.+. ++.+.++++..++...
T Consensus 474 ~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~-~vvva~-g~~l~~fel~~~~L~~--- 546 (1158)
T 3ei3_A 474 QTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SS-QVVVAV-GRALYYLQIHPQELRQ--- 546 (1158)
T ss_dssp CEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SS-EEEEEE-TTEEEEEEEETTEEEE---
T ss_pred CcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CC-EEEEEE-CCEEEEEEeeCCceee---
Confidence 33333321 34577777766566666664445567777765 33 555554 5788888776543111
Q ss_pred chhhhhHhhcccceEEEEEcCC------CCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccC--CccceEE
Q 041325 294 HSLVQTLEKHKSAVTALALSTD------GTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRG--HTKAILC 364 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~------~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 364 (450)
... ......|.|+++.|. ++++++|.. |++|+|+++.+.+.+. ...+.. -...+.-
T Consensus 547 ---~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~-----------~~~L~~~~~p~si~l 611 (1158)
T 3ei3_A 547 ---ISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH-----------KEMLGGEIIPRSILM 611 (1158)
T ss_dssp ---EEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE-----------EEECCSSCCEEEEEE
T ss_pred ---ecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE-----------EEECCCCCCCcEEEE
Confidence 111 123567999999763 479999996 9999999998765442 112211 1112222
Q ss_pred EEEeC-CeEEEEeCCCeEEEeeCC
Q 041325 365 LAVVS-NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 365 ~~~~~-~~l~s~~~dg~v~iwd~~ 387 (450)
+.+.+ .+|..|-.||.+.-+.+.
T Consensus 612 ~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 612 TTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEETTEEEEEEEETTSEEEEEEEC
T ss_pred EEeCCCcEEEEEeCCCeEEEEEEc
Confidence 22323 388899999998666554
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.64 E-value=0.86 Score=38.47 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=77.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.|..++...+.. ++. . ||.|..|-....-.+.. .......|..++.. .. +.+.-. ||.|..|-......
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G--~~-hs~al~-~G~v~~wG~n~~gq--- 132 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV-PAEARSGVDAIAAG--AW-ASYALK-DGKVIAWGDDSDGQ--- 132 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC-CGGGSSSEEEEEEE--TT-EEEEEE-TTEEEEEECCTTST---
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC-CcccCCCeEEEECc--CC-EEEEEe-CCeEEEecCCCCCc---
Confidence 455565543332 333 4 88888887654322211 11223467777775 34 433334 99999997643220
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCe
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL 371 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 371 (450)
+.........|..++...+ ..+.-. ||.|+.|-....-.+ ..... -...|..++-...+
T Consensus 133 -----lg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gql----------g~p~~---~~~~v~~i~~G~~h 191 (282)
T 3qhy_B 133 -----TTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQT----------TVPAE---AQSGVDDVAGGIFH 191 (282)
T ss_dssp -----TSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTT----------SCCGG---GGSSEEEEEECSSE
T ss_pred -----CCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCC----------CCcee---cCCCeEEEEecCCE
Confidence 0001112345777776533 333334 799999987643211 00011 13467788777665
Q ss_pred EEEEeCCCeEEEeeCCC
Q 041325 372 LFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~ 388 (450)
.+.- .||.|+.|=...
T Consensus 192 s~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 192 SLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp EEEE-ETTEEEEEECCT
T ss_pred EEEE-ECCeEEEEECCC
Confidence 4445 699999997654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.58 E-value=1.1 Score=39.30 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.5
Q ss_pred CceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 128 DAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
.....++|.+++ ++.+..+|.|++++
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 456799999887 77778889999988
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=95.50 E-value=0.97 Score=38.15 Aligned_cols=222 Identities=11% Similarity=0.130 Sum_probs=118.8
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCC
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~ 156 (450)
.|..++.-....+.-. ||.|+.|-......... + ......|..++......+.-. ||.|..|-...
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~-----p-------~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM-----P-------AATQSGVDAIAAGNYHSLALK-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC-----C-------GGGGSCCCEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC-----C-------ccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCC
Confidence 4677777333333335 89999997654332211 0 011236778887777633334 89999998765
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKI 236 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 236 (450)
....- +|. .-...|..++...+. .+.-. ||.|..
T Consensus 91 ~Gqlg-----------------~P~--------------------------~~~~~v~~ia~G~~h--s~al~-~G~v~~ 124 (282)
T 3qhy_B 91 DGQTT-----------------VPA--------------------------EARSGVDAIAAGAWA--SYALK-DGKVIA 124 (282)
T ss_dssp TSTTC-----------------CCG--------------------------GGSSSEEEEEEETTE--EEEEE-TTEEEE
T ss_pred CCCCC-----------------CCc--------------------------ccCCCeEEEECcCCE--EEEEe-CCeEEE
Confidence 41100 000 011256666665433 33334 889999
Q ss_pred EecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
|-....-.+.. .......|..++.- ....++. . ||.|..|-....... ..+. .....|..++...+.
T Consensus 125 wG~n~~gqlg~-~~~~~~~i~~i~~G--~~~~~~l-~-~G~v~~wG~n~~gql----g~p~----~~~~~v~~i~~G~~h 191 (282)
T 3qhy_B 125 WGDDSDGQTTV-PAEAQSGVTALDGG--VYTALAV-K-NGGVIAWGDNYFGQT----TVPA----EAQSGVDDVAGGIFH 191 (282)
T ss_dssp EECCTTSTTSC-CGGGGSSEEEEEEC--SSEEEEE-E-TTEEEEEECCTTSTT----SCCG----GGGSSEEEEEECSSE
T ss_pred ecCCCCCcCCC-CccCCCCeEEEEcc--cCEEEEE-E-CCEEEEecCCCCCCC----CCce----ecCCCeEEEEecCCE
Confidence 97654322211 11234567777664 3323333 3 799999975432210 0011 113567777775432
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
.++. .||.|+.|-....-.+ .... .....|..++-...+.+.-. ||.|..|=...
T Consensus 192 -s~al--~~G~v~~wG~n~~gql----------g~p~---~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 192 -SLAL--KDGKVIAWGDNRYKQT----------TVPT---EALSGVSAIASGEWYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -EEEE--ETTEEEEEECCTTSTT----------CCCG---GGGSSCCEEEECSSCEEEEE-TTEEEEESTTC
T ss_pred -EEEE--ECCeEEEEECCCCCCC----------CCCc---ccCCCceEEEcCCCEEEEEE-CCEEEEecCCC
Confidence 3333 5999999986643211 0000 11234677776666555555 99999997654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.34 E-value=2.4 Score=41.70 Aligned_cols=277 Identities=14% Similarity=0.174 Sum_probs=138.1
Q ss_pred CcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 75 SSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 75 ~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
...|.++.. +...|..|+.+| +..+|..+...... . ......|.++....+.|..++.+ -+..+|
T Consensus 62 ~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~----~--------~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~ 127 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQP----E--------TDFPTDVRTMALQGDTLWLGALN-GLYTYQ 127 (758)
T ss_dssp SSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCC----S--------CCCCSCEEEEEEETTEEEEEETT-EEEEEE
T ss_pred CceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECc----c--------cCCCceEEEEEecCCcEEEEcCC-cceeEe
Confidence 346888877 456788888766 78899876543220 0 01123577776666667777776 578888
Q ss_pred cCCCceeEEecc-Ccccccceeeeeecc-CCCcceeEeeecCceEEEeec-cee-eee--c----CCCceEEEEEccCCC
Q 041325 154 IDNNTSAYYSTS-GKLKNKYYERIATLP-TLNDRFTKCFLANNYVQVRRH-KKC-TWV--H----HVDTVSALALSSDGS 223 (450)
Q Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--~----~~~~v~~~~~~~~~~ 223 (450)
..+.+...+... ...... .+..+. ..++.+.+.. .++...+... ... .+. . ....|.++....++.
T Consensus 128 ~~~~~~~~~~~~~~~l~~~---~i~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~ 203 (758)
T 3ott_A 128 LQSRKLTSFDTRRNGLPNN---TIYSIIRTKDNQIYVGT-YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQ 203 (758)
T ss_dssp TTTCCEEEECHHHHCCSCS---CEEEEEECTTCCEEEEE-TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTT
T ss_pred CCCCeEEEeccCCCCcCCC---eEEEEEEcCCCCEEEEe-CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCC
Confidence 876654333111 011111 111111 1122222222 2222222111 111 110 0 122478888887777
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
.|..|+. +-+..+|..+++... +.......|.++... .++.|..|+.+ -+.+++..+......... ......-.
T Consensus 204 ~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d--~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~-~~~~~~l~ 277 (758)
T 3ott_A 204 CVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALD--GNGDLLAGTDN-GLYVYHNDTTPLQHIIHD-SRNIQSLT 277 (758)
T ss_dssp EEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEEC--TTCCEEEEETT-EEEEECCTTSCCEEECCC-TTCTTSCS
T ss_pred EEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEc--CCCCEEEEeCC-ceeEEecCCCcEEEEEcC-CCCcCcCC
Confidence 6666664 468888987765432 221223457777665 45566667754 578888755431100000 00000112
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc--cCCccceEEEEEeCC-eEEEEeCCCe
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL--RGHTKAILCLAVVSN-LLFSGSSDNT 380 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~l~s~~~dg~ 380 (450)
...|.++....+|. |..|+..| +.++.... ... ....... ......|.++..+.+ .|..|+.+|
T Consensus 278 ~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~~~---------~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G- 344 (758)
T 3ott_A 278 NNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-ALQ---------FIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG- 344 (758)
T ss_dssp CSCEEEEEECTTCC-EEEEESSS-EEEECCCC--CE---------EEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-
T ss_pred cCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-cee---------EEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-
Confidence 35688998887776 44555566 55443221 100 0000000 112345788877643 666666555
Q ss_pred EEEeeCCC
Q 041325 381 IRIWRRSS 388 (450)
Q Consensus 381 v~iwd~~~ 388 (450)
+..++..+
T Consensus 345 l~~~~~~~ 352 (758)
T 3ott_A 345 LIRFTDPA 352 (758)
T ss_dssp EEEESCTT
T ss_pred ceeecccc
Confidence 55666543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.9 Score=36.35 Aligned_cols=138 Identities=11% Similarity=0.044 Sum_probs=73.5
Q ss_pred CCEEEEEeCCCcEEEEecCCCe------EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFR------CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
..+|+....| +++.=...+.. ....+....-..+..++|+| +. .|.+. .+|.+.-.+..+..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G-~LYaV-~~G~Ly~~~~~t~~-------- 71 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GG-ELYGV-LNDKIYKGTPPTHD-------- 71 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TS-CEEEE-ETTEEEEESCCCST--------
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-Cc-cEEEE-eCCeEEEECCCCCC--------
Confidence 3455556666 55544444332 12223211124778999998 33 44444 77877766654332
Q ss_pred hhhhHhhcccc--------eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc--cCCccceEEE
Q 041325 296 LVQTLEKHKSA--------VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL--RGHTKAILCL 365 (450)
Q Consensus 296 ~~~~~~~~~~~--------i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~ 365 (450)
. ..+.+.... ...+.|.|+|.+.++ .||.|+-++..+.. .....-.... ..--..+..+
T Consensus 72 ~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~--------~~~Wl~~a~~vg~~gw~~~~~l 140 (236)
T 1tl2_A 72 N-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD--------TDNWIARATEVGSGGWSGFKFL 140 (236)
T ss_dssp T-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST--------TCCHHHHSEEEECSSGGGEEEE
T ss_pred c-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC--------CCceeccccEeccCCCCceEEE
Confidence 1 111111222 378999999987777 56999888754321 0011000011 1112457888
Q ss_pred EEeCC-eEEEEeCCCeEEE
Q 041325 366 AVVSN-LLFSGSSDNTIRI 383 (450)
Q Consensus 366 ~~~~~-~l~s~~~dg~v~i 383 (450)
.+.++ .|.+.. |+.++-
T Consensus 141 ff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 141 FFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp EECTTSCEEEEE-TTEEEE
T ss_pred EECCCceEEEEe-CCcEEe
Confidence 88876 666666 887543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.84 E-value=1.9 Score=37.81 Aligned_cols=110 Identities=11% Similarity=0.089 Sum_probs=56.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee------cccccceEEEEEeec---CCcEEEEEcC-------C
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK------NAHDDAINAIVVSKS---NDGFVYTGSA-------D 275 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~---~~~~l~~~~~-------d 275 (450)
....|+|.|+|+.|+.+...|.|++++.. ++....+. .........|+++|+ +..+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 56899999999834455668999999853 43221111 112345688999974 3333333222 2
Q ss_pred CcEEEEeCcchhhhccccchhhhhHh---hcccceEEEEEcCCCCEEEEe
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLE---KHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~g 322 (450)
..|..|++.............+..+. ........|+|.|||.+.++-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 34555555322100000001111111 111223579999999655553
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=94.75 E-value=3.5 Score=40.50 Aligned_cols=288 Identities=10% Similarity=0.076 Sum_probs=139.6
Q ss_pred cceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 76 SYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 76 ~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
..|.++..| ...|..|+.+ -+.+++..+.+........... . .-....|.++....++ |..|+..| +.++.
T Consensus 232 ~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~-~----~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 232 NSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNI-Q----SLTNNIIWNIFADQEHNIWLGTDYG-ISLSR 304 (758)
T ss_dssp EEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCT-T----SCSCSCEEEEEECTTCCEEEEESSS-EEEEC
T ss_pred CeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCc-C----cCCcCeEEEEEEcCCCCEEEEeCCc-ccccc
Confidence 347777774 4455556654 5788887766544331111000 0 0123468888877655 88888777 54443
Q ss_pred cCCCceeEEecc---CcccccceeeeeeccCCCcceeEeeecCceEEEeecc----ee-eee-------cCCCceEEEEE
Q 041325 154 IDNNTSAYYSTS---GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK----KC-TWV-------HHVDTVSALAL 218 (450)
Q Consensus 154 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~-------~~~~~v~~~~~ 218 (450)
... ........ .......+..+ ....++.+-+.. .++...+.... .. .+. -....|.++.-
T Consensus 305 ~~~-~~~~~~~~~~~~~~~~~~v~~i--~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 380 (758)
T 3ott_A 305 YNS-ALQFIPISQITGTGDGNQFYSL--FRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYE 380 (758)
T ss_dssp CCC--CEEEEHHHHSCSCCCCBEEEE--EECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEE
T ss_pred cCC-ceeEEecccCCCCCCCceEEEE--EEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEE
Confidence 321 11111100 00001111111 111222222221 22222221111 00 111 01245888888
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cc----cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NA----HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
..++++ ..|+ ++-|..||..+++...... .. ....|.++... .++.|..|+..+-|..+|..+........
T Consensus 381 d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g~lWigT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 381 DKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFED--TAGQLWISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp CTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEEC--TTSEEEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred CCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEc--CCCCEEEEECCCceEEEccccccccCCcc
Confidence 888874 4455 4578899998776543221 01 12346666654 56678888877778888854311000000
Q ss_pred ch---hhhhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 294 HS---LVQTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 294 ~~---~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
.. ......+ ....|.++...++|++.+.++..+-|..+|..+++...-.. ..+ .....+.++..+.
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~---------~~~-~~~~~~~~i~~d~ 526 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFA---------DEL-TGEKSPNYLLCDE 526 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECT---------TTS-CGGGCEEEEEECT
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecC---------CCc-CCCcccceEEECC
Confidence 00 0000011 22458899999888876633334558889988765431100 001 1134567777764
Q ss_pred C-eEEEEeCCCeEEEeeCCCC
Q 041325 370 N-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 370 ~-~l~s~~~dg~v~iwd~~~~ 389 (450)
+ .|..|+.+ -+..++..+.
T Consensus 527 ~g~lWigt~~-Gl~~~~~~~~ 546 (758)
T 3ott_A 527 DGLLWVGFHG-GVMRINPKDE 546 (758)
T ss_dssp TSCEEEEETT-EEEEECC--C
T ss_pred CCCEEEEecC-ceEEEecCCC
Confidence 3 55666655 4778887653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=2.2 Score=37.30 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=69.6
Q ss_pred ceEEEEEccCCCEEEEEe-----------------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 212 TVSALALSSDGSLLYSTS-----------------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+.+.+.++|.+.++.. ..|.|.-+|. ++. ..+. ..-...+.++|+|+++.+.++-+.
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~-~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVA-EGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEE-EEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEee-cCCcccCcceECCCCCEEEEEeCC
Confidence 578899999998766643 1244555554 322 2222 234567999999977766777778
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCC-CcEEEEEcC
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACD-RSILVWERD 334 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d-g~i~vwd~~ 334 (450)
.+.|..|++..... ......+ ......-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 242 ~~~I~~~~~~~~g~-----l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 242 AHKIHVYEKHANWT-----LTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp GTEEEEEEECTTSC-----EEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCeEEEEEECCCCc-----EecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 89999999863210 0011112 1245678899998 59877766544 345555443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=3.6 Score=39.89 Aligned_cols=155 Identities=9% Similarity=0.120 Sum_probs=78.7
Q ss_pred cCCCEEEEEeCC----CcEEEEecCCCeEEEEe-e-----cccccceEEEEEeecCCcEEEEEcCC------CcEEEEeC
Q 041325 220 SDGSLLYSTSWD----RTFKIWRTSDFRCLESV-K-----NAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKK 283 (450)
Q Consensus 220 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~ 283 (450)
.++.+++.|+.+ ..+.+||..+.+-...- . ......-.+++....++.+++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 45888898876533222 1 01111223333331134466666643 35778888
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.+.... .+..+...... .+++...++++++.|+.++ .+.+||..+.+....... .........
T Consensus 476 ~t~~W~------~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~--------g~~p~~r~~ 540 (695)
T 2zwa_A 476 KTREWS------MIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK--------DEFFQNSLV 540 (695)
T ss_dssp TTTEEE------ECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS--------SGGGGSCCB
T ss_pred CCCcEE------ECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC--------CCCCCcccc
Confidence 765422 22222211122 2233323788888887655 699999987654311000 001111111
Q ss_pred eEEEEEe---CCeEEEEeC--C-----CeEEEeeCCCC
Q 041325 362 ILCLAVV---SNLLFSGSS--D-----NTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~---~~~l~s~~~--d-----g~v~iwd~~~~ 389 (450)
-.++.+. +.+++.|+. + +.+.+||+.+.
T Consensus 541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1334455 446666765 2 45888998864
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.41 E-value=1.2 Score=38.93 Aligned_cols=94 Identities=4% Similarity=0.076 Sum_probs=46.4
Q ss_pred CCCEEEEEeC-CCcEEEEecCC--CeEEEEeec-c-cccceEEEEEeecCCcEEEEEcC-C---------CcEEEEeCcc
Q 041325 221 DGSLLYSTSW-DRTFKIWRTSD--FRCLESVKN-A-HDDAINAIVVSKSNDGFVYTGSA-D---------TKIKVWKKLR 285 (450)
Q Consensus 221 ~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~vwd~~~ 285 (450)
++.+++.|+. ...+.+||+.+ .+- ..+.. . ....-.+++.. ++.+++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W-~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKW-TALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCE-EECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCe-eECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 5666666653 35688889864 221 12211 1 11122233333 4556666665 2 4688899877
Q ss_pred hhhhccccchhhhhHh-hcccceEEEEEcCCCCEEEEeeCC
Q 041325 286 AALQVNKKHSLVQTLE-KHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
.+.. .+..+. ........+. .++++++.|+.+
T Consensus 96 ~~W~------~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWV------KLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TEEE------ECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CcEE------ECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 6532 121111 1112222233 467788888754
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.24 Score=42.88 Aligned_cols=119 Identities=9% Similarity=0.085 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEe--ecCCcEEEEE-cCCCcEEEEeCcchhhhccccchhhhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS--KSNDGFVYTG-SADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.+++.++.||.|.-.|..+|+.+..+......++....-. +.++..++.. +.||.|..++..++.... .. .+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--~~-~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL--PL-SIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE--EE-EHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe--ee-cccc
Confidence 4688899999999999999999998873311222221100 0112233333 689999999987664211 11 1111
Q ss_pred HhhcccceEE---EEE-----cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 300 LEKHKSAVTA---LAL-----STDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 300 ~~~~~~~i~~---l~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
+. ..+++.. ... ...+..+++|+.+|.+...|+.+|+.+......
T Consensus 88 lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 88 LV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 11 1222221 000 014568899999999999999999988776543
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=94.09 E-value=3.1 Score=37.23 Aligned_cols=274 Identities=10% Similarity=0.087 Sum_probs=132.1
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEEeCCeEEEEeCC-CeEEEE
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVVLGDKLFSAHQD-HKIRVW 152 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~~~d-g~i~iw 152 (450)
...|..++.-+...+.-..||.|+.|-....-.+-...... ......+. -....|..++...+..+.-..| +.|..|
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 34677788866666667778999999755422111100000 00000111 1234678888777774444555 599999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
-....-..-. +.. ....... +.. ......|..++.. ....+.-..||
T Consensus 94 G~n~~GqLG~---g~~-~~~~~p~-------------------------~v~--~l~~~~i~~ia~G--~~h~~alt~~G 140 (406)
T 4d9s_A 94 GWGDFGRLGH---GNS-SDLFTPL-------------------------PIK--ALHGIRIKQIACG--DSHCLAVTMEG 140 (406)
T ss_dssp ECCGGGTTCS---SSC-CCEEEEE-------------------------ECG--GGTTCCEEEEEEC--SSEEEEEETTS
T ss_pred cCCCCcCCCC---CCC-Cccccce-------------------------Eec--ccCCCCEEEEEEC--hhheEEEcCCC
Confidence 6543211000 000 0000000 000 0012245556554 33455556788
Q ss_pred cEEEEecCCC----------e-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-hhccc---cchhh
Q 041325 233 TFKIWRTSDF----------R-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-LQVNK---KHSLV 297 (450)
Q Consensus 233 ~i~iwd~~~~----------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---~~~~~ 297 (450)
.|..|-.... . ....+.......|..++.- ..+.++-..+|.|..|-..... +.... ...+.
T Consensus 141 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~ 217 (406)
T 4d9s_A 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG---AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPE 217 (406)
T ss_dssp CEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEE
T ss_pred cEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC---CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccE
Confidence 9999965431 1 1111221122356666653 4466666789999999643211 00000 00000
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeC
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS 377 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 377 (450)
.........|..++.. ..+.++-..+|.|+.|-....-.+-.... .....+..........|..++-...+.+.-..
T Consensus 218 ~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~ 294 (406)
T 4d9s_A 218 RVTSTGGEKMSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDL-EDHLIPHKLEALSNSFISQISGGWRHTMALTS 294 (406)
T ss_dssp ECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEET
T ss_pred EecccCCceEEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCC-cCccccEEecccCCCCEEEEEecCCEEEEEcC
Confidence 0001112346666553 34555667899999997654322111110 01111111111223457777777777777789
Q ss_pred CCeEEEeeCCC
Q 041325 378 DNTIRIWRRSS 388 (450)
Q Consensus 378 dg~v~iwd~~~ 388 (450)
||.|+.|=.+.
T Consensus 295 ~G~v~~wG~n~ 305 (406)
T 4d9s_A 295 DGKLYGWGWNK 305 (406)
T ss_dssp TSCEEEEECCT
T ss_pred CCeEEEeeCCC
Confidence 99999996543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=3 Score=36.54 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=21.1
Q ss_pred CceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 128 DAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
.....|+|.+++ |+.+..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe
Confidence 467889998776 78888889998886
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=5.7 Score=38.52 Aligned_cols=119 Identities=10% Similarity=0.026 Sum_probs=61.0
Q ss_pred cCCCEEEEEeCCC--cEEEEecCCCeEEEEee---cc-cccceEEEEEeecCCcEEEEEcC--C-----CcEEEEeCcch
Q 041325 220 SDGSLLYSTSWDR--TFKIWRTSDFRCLESVK---NA-HDDAINAIVVSKSNDGFVYTGSA--D-----TKIKVWKKLRA 286 (450)
Q Consensus 220 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~l~~~~~--d-----g~i~vwd~~~~ 286 (450)
.++.+++.|+.++ .+.+||..+.+-...-. .. ......++.+....+.+++.|+. + +.+..||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 3778888887654 68999998865332211 01 11122234444322446666665 2 45888998766
Q ss_pred hhhccccchhhhhH-hhcccceEEEEEcCCCCEEEEeeC--------CCcEEEEEcCCCcee
Q 041325 287 ALQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGAC--------DRSILVWERDQGNYI 339 (450)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~~--------dg~i~vwd~~~~~~~ 339 (450)
.......+..+... .........+ ...++++++.|+. ...+.+||+.+.+..
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 51000001111111 0111122222 3323777788774 345899999877643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.56 E-value=0.91 Score=36.34 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=61.7
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE------EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC------LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
.+..++|+|+|.+.++ .+|.+.-.+..+... -..+-...-..-.++.|.+ ++.|.+. .||.|.-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~--~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP--NGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT--TSCEEEE-ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC--CCCEEEe-CCCEEEEeCCCc
Confidence 6779999999986666 678776666644221 1111100111136777775 3444444 669888777533
Q ss_pred hhhhccccchhhhhHhh--cccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 286 AALQVNKKHSLVQTLEK--HKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
... ..+.-.....+ -=..+..|.+.|+|.+.++. |+.++-.
T Consensus 117 ~~~---~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 117 SDT---DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp STT---CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CCC---CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 220 11100000000 11467999999999877666 7876543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=93.10 E-value=2.7 Score=43.82 Aligned_cols=75 Identities=11% Similarity=0.027 Sum_probs=47.7
Q ss_pred cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 254 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
+-..++..++ ..+.+..-+.-|.|.+||+.++. ++..-+-....|...+.+....-++.....|.|.-..+
T Consensus 259 Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~--------~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v 329 (1630)
T 1xi4_A 259 DFPVAMQISE-KHDVVFLITKYGYIHLYDLETGT--------CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (1630)
T ss_pred CcceEEEecc-ccCEEEEEecCceEEEEecccch--------hhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEE
Confidence 3445666766 44578888899999999998877 55544444555655555444334444456676666665
Q ss_pred CCCc
Q 041325 334 DQGN 337 (450)
Q Consensus 334 ~~~~ 337 (450)
...+
T Consensus 330 ~~~~ 333 (1630)
T 1xi4_A 330 EEEN 333 (1630)
T ss_pred ccch
Confidence 5443
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=93.09 E-value=1.2 Score=40.67 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=60.5
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE--EEeec-----ccccceEEEEEeec---CCcEEEEEcC------
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL--ESVKN-----AHDDAINAIVVSKS---NDGFVYTGSA------ 274 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~~~------ 274 (450)
.....|+|.|+|+++++-...+.|++++..+++.. ..+.. ........|+++|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999997776544457988887655432 22221 12456779999984 3333333321
Q ss_pred ------CCcEEEEeCcchhhhccccchhhhhHh-hcccceEEEEEcCCCCEEEEee
Q 041325 275 ------DTKIKVWKKLRAALQVNKKHSLVQTLE-KHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 275 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
...|.-|+..............+..+. ........|+|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554322100000011111111 1123468899999998777644
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=6.5 Score=37.46 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=92.2
Q ss_pred CceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 211 DTVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 211 ~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
..+.+++|++.+.. +++-...+.|..+++........+. ........+++.+..+++.++-...+.|.+.++.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~-~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~- 426 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT-AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR- 426 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE-CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-
Confidence 35678899885444 4444457888888887543322232 33356778888876676778878889999998764320
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
. .+ ....-.....|++.|...+|+.... .+.|...++...... .+ ....-.....|++
T Consensus 427 ----~-~l--~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~----------~l---~~~~l~~P~Glal 486 (619)
T 3s94_A 427 ----K-IL--ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV----------VL---VNTSLGWPNGLAL 486 (619)
T ss_dssp ----E-EE--ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE----------EE---ECSSCSCEEEEEE
T ss_pred ----E-EE--EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE----------EE---EeCCCCCCeeeEE
Confidence 0 11 1112356789999996445555442 356766666532111 01 1112234567777
Q ss_pred e--CCeEEEE-eCCCeEEEeeCCC
Q 041325 368 V--SNLLFSG-SSDNTIRIWRRSS 388 (450)
Q Consensus 368 ~--~~~l~s~-~~dg~v~iwd~~~ 388 (450)
+ .+.|..+ +..+.|..+++..
T Consensus 487 D~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 487 DYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSS
T ss_pred cccCCEEEEEECCCCEEEEEecCC
Confidence 7 3444444 4557788888764
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.25 E-value=6.2 Score=35.47 Aligned_cols=272 Identities=10% Similarity=0.023 Sum_probs=135.1
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCC-CCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDV-GDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
..|..|+.-+...+.-..||.|+.|-....-.+-...... ...... ...-...|..|+......+.-..||.|..|-.
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~-~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPD-LIDLPGKALCISAGDSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCE-ECCCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCe-EEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence 3578888877777777889999999765422111100000 000011 11123467888877777777788999999986
Q ss_pred --CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 155 --DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
...-..-...... ...... ......|..++.. ....+.-..+|
T Consensus 154 ~~n~~GqlG~~~~~~----~~~p~~-----------------------------~~~~~~i~~va~G--~~hs~alt~~G 198 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGN----KRTPID-----------------------------LMEGTVCCSIASG--ADHLVILTTAG 198 (423)
T ss_dssp EECSSSEEESBTTBC----EEEEEE-----------------------------SSTTCCEEEEEEC--SSEEEEEETTS
T ss_pred CCCCCCCcCcCCCCC----CceeeE-----------------------------ecCCCcEEEEecC--CCeEEEEecCC
Confidence 3221100000000 000000 0112245556554 33455556788
Q ss_pred cEEEEecCCCeE----------------------EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-hh
Q 041325 233 TFKIWRTSDFRC----------------------LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-LQ 289 (450)
Q Consensus 233 ~i~iwd~~~~~~----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~ 289 (450)
.|..|-....-. ...+.......|..++.. ....++.-..+|.|..|-..... +.
T Consensus 199 ~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g--~~~~~~~~~~~g~v~~wG~n~~gqlg 276 (423)
T 3mvd_K 199 KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT--NYCTFMRESQTQVIWATGLNNFKQLA 276 (423)
T ss_dssp CEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE--TTEEEEEETTTCCEEEEEECTTCTTS
T ss_pred eEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC--CcEEEEEECCCCeEEEEeCCCCCcCC
Confidence 888885432110 111111223456666654 33344444789999999653311 00
Q ss_pred cccc--chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 290 VNKK--HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 290 ~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
.... .............|..|+.. ..+.++-..||.|+.|-....-.+-...... .......+..-...|..++-
T Consensus 277 ~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~~p~~v~~l~~~v~~ia~ 353 (423)
T 3mvd_K 277 HETKGKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKD-VVEKPTIVKKLTEKIVSVGC 353 (423)
T ss_dssp SCCTTCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCS-CEEEEEECTTCCSCEEEEEE
T ss_pred CCCCCCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccc-cccCceEeccCCCCEEEEEc
Confidence 0000 00000000012346666553 3455566789999999765321111111000 01111122222236888887
Q ss_pred eCCeEEEEeCCCeEEEeeCCC
Q 041325 368 VSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 368 ~~~~l~s~~~dg~v~iwd~~~ 388 (450)
...+.+.-..||.|+.|=...
T Consensus 354 G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 354 GEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp ETTEEEEEETTSCEEEEECCT
T ss_pred CCCeEEEEcCCCCEEEECCCC
Confidence 777777778999999996553
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.12 E-value=6.4 Score=35.36 Aligned_cols=266 Identities=8% Similarity=-0.005 Sum_probs=126.1
Q ss_pred CceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 128 DAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 128 ~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
..|..|+......+.-..||.|..|=....-..-........ ...| ...
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~-------~~~P------------------------~~v 123 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS-------ESKP------------------------DLI 123 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTS-------SSSC------------------------EEC
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcc-------ccCC------------------------eEE
Confidence 457788877777777788999999976543110000000000 0000 000
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEec--CC-CeE--------EEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRT--SD-FRC--------LESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~-~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
.....|..++.. ....+.-..||.|..|-. .. ++. ...........|..|+.- ..+.++-..+|
T Consensus 124 ~~~~~i~~va~G--~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G---~~hs~alt~~G 198 (423)
T 3mvd_K 124 DLPGKALCISAG--DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG---ADHLVILTTAG 198 (423)
T ss_dssp CCSSCEEEEEEC--SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC---SSEEEEEETTS
T ss_pred cCCCCEEEEEcC--cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC---CCeEEEEecCC
Confidence 011245555443 234444567888888864 22 211 111111233456666653 44666667899
Q ss_pred cEEEEeCcchh-hhcccc--------------chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 277 KIKVWKKLRAA-LQVNKK--------------HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 277 ~i~vwd~~~~~-~~~~~~--------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
.|..|-..... +..... ..+..........|..++... ...++.-..+|.|+.|-....-.+-.
T Consensus 199 ~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~ 277 (423)
T 3mvd_K 199 KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAH 277 (423)
T ss_dssp CEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSS
T ss_pred eEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCC
Confidence 99999643211 100000 000000001123455555442 22233335789999997654322211
Q ss_pred CCCCCC-ceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCcc-cc---CCCceeEEEecCCCcceEEEEEE
Q 041325 342 GDDDSG-HMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT-DH---QKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 342 ~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~---~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
...... ...+. ... ...|..++-...+.+.-..||.|+.|=...... .. .........+..-...|..|+..
T Consensus 278 ~~~~~~~~~~p~-~~~--~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G 354 (423)
T 3mvd_K 278 ETKGKEFALTPI-KTE--LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG 354 (423)
T ss_dssp CCTTCSEEEEEE-EEC--CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE
T ss_pred CCCCCceeeeeE-EcC--CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC
Confidence 000000 01111 111 346777777777777788999999996543110 00 01011122222222357777655
Q ss_pred ecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
... .+.-..||.|+.|-
T Consensus 355 ~~h---------------s~alt~~G~v~~wG 371 (423)
T 3mvd_K 355 EVC---------------SYAVTIDGKLYSWG 371 (423)
T ss_dssp TTE---------------EEEEETTSCEEEEE
T ss_pred CCe---------------EEEEcCCCCEEEEC
Confidence 442 33336788888883
|
| >4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A | Back alignment and structure |
|---|
Probab=90.94 E-value=8.4 Score=34.40 Aligned_cols=271 Identities=10% Similarity=0.092 Sum_probs=131.3
Q ss_pred cceEEEEEeCCEEEEeeCC-CcEEEecCCCCCceeeeecCCCCcceeEE-ecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 76 SYIPSLAIAGKLLYGGSSN-GEIRAWNRDPNNYVNITSTDVGDHANVVA-TGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
..|..++.-....+.-..| |.|+.|-......+-..... ........ ......|..|+......+.-..||.|..|-
T Consensus 68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG 146 (406)
T 4d9s_A 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWG 146 (406)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCC-CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCC-ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeC
Confidence 4688888844444444444 59999965432111000000 00000001 112336888887777777778899999997
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
....-..-.... ........+.. .....|..++.. ....+.-..+|.
T Consensus 147 ~n~~GqLG~g~~--~~~~~p~~v~~-----------------------------~~~~~i~~va~G--~~hs~alt~~G~ 193 (406)
T 4d9s_A 147 RNQNGQLGLGDT--EDSLVPQKIQA-----------------------------FEGIRIKMVAAG--AEHTAAVTEDGD 193 (406)
T ss_dssp CCTTSTTCSSSC--CCEEEEEECGG-----------------------------GTTCCEEEEEEC--SSEEEEEETTSC
T ss_pred CCCCccCCCCCC--CCcccceEecc-----------------------------cCCCcEEEEecC--CCeEEEEeCCCC
Confidence 654311000000 00000000000 011245555543 334455567888
Q ss_pred EEEEecCCC----------e-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-hhc-----cccchh
Q 041325 234 FKIWRTSDF----------R-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-LQV-----NKKHSL 296 (450)
Q Consensus 234 i~iwd~~~~----------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~-----~~~~~~ 296 (450)
|..|-.... . ....+.......|..++.- ..+.+.-..+|.|..|-..... +.. ......
T Consensus 194 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G---~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~ 270 (406)
T 4d9s_A 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG---WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 270 (406)
T ss_dssp EEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC---SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC---CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence 888854321 1 1111221222456666653 4455666788999999643321 000 000111
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS 376 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 376 (450)
+..+ ....|..++.. ....++-..||.|+.|-....-.+-.... .....+..........|..++-...+.++-.
T Consensus 271 v~~~--~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~~~~~v~~va~G~~hs~alt 345 (406)
T 4d9s_A 271 LEAL--SNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNN-LDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT 345 (406)
T ss_dssp CGGG--TTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSS-SCEEEEEEECCGGGCCEEEEEECSSEEEEEE
T ss_pred eccc--CCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCC-CCCccCEEEeccCCCcEEEEEeCCCeEEEEe
Confidence 1111 12346666653 34555567899999997654222110000 1111111111122346777877777777778
Q ss_pred CCCeEEEeeCCC
Q 041325 377 SDNTIRIWRRSS 388 (450)
Q Consensus 377 ~dg~v~iwd~~~ 388 (450)
.||.|+.|=...
T Consensus 346 ~~G~v~~wG~n~ 357 (406)
T 4d9s_A 346 ERNNVFAWGRGT 357 (406)
T ss_dssp TTSCEEEEECCT
T ss_pred CCCCEEEecCCC
Confidence 999999996543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.29 E-value=8.6 Score=33.49 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=41.2
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----eEEEEeC-C
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-----KLFSAHQ-D 146 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~~~-d 146 (450)
-..-..|+| ||+++++ ..+|.|++++ +++........ ...........|+++++ .|+.+.. +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~-------v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~ 99 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS-------VYHRGESGLLGLALHPRFPQEPYVYAYRTVA 99 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC-------CCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce-------EeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence 445678888 6775554 5669999998 33322111110 01122356789999987 3544433 2
Q ss_pred -----CeEEEEEcCC
Q 041325 147 -----HKIRVWKIDN 156 (450)
Q Consensus 147 -----g~i~iw~~~~ 156 (450)
+.|..|+...
T Consensus 100 ~~~~~~~v~r~~~~~ 114 (352)
T 2ism_A 100 EGGLRNQVVRLRHLG 114 (352)
T ss_dssp TTSSEEEEEEEEECS
T ss_pred CCCCccEEEEEEeCC
Confidence 5566666653
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=89.17 E-value=10 Score=32.85 Aligned_cols=250 Identities=12% Similarity=0.065 Sum_probs=117.3
Q ss_pred CCceEEEEEeCCe-EEEEeC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 127 GDAVKSLVVLGDK-LFSAHQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 127 ~~~v~~l~~~~~~-l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
-...+.|+|.+++ ++.+.. .|.|++++...+.. ..+..++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~--------------~~v~~~~~----------------------- 73 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK--------------TELGEVPG----------------------- 73 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--------------EEEEECTT-----------------------
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE--------------eeecccCc-----------------------
Confidence 4567899999887 666666 89999887655422 11111110
Q ss_pred eeecCCCceEEEEEccC---CCEEEEE-e--CCCcEEEEecCCC----------eEEE-EeecccccceEEEEEeecCCc
Q 041325 205 TWVHHVDTVSALALSSD---GSLLYST-S--WDRTFKIWRTSDF----------RCLE-SVKNAHDDAINAIVVSKSNDG 267 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~---~~~l~~~-~--~dg~i~iwd~~~~----------~~~~-~~~~~~~~~v~~~~~~~~~~~ 267 (450)
.+.........|+++|+ +..|+.. + .++.|.-|.+..+ +.+. .+..........|.|.|++.
T Consensus 74 v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~- 152 (347)
T 3das_A 74 VSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM- 152 (347)
T ss_dssp CCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-
T ss_pred eeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-
Confidence 00123346788999985 3344433 2 3455555655431 1111 12212223456788987543
Q ss_pred EEEEEcC-------------CCcEEEEeCcchhhhccccchhhhhH-hhcccceEEEEEcCCCCEEEEee-CCCcEEEEE
Q 041325 268 FVYTGSA-------------DTKIKVWKKLRAALQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGA-CDRSILVWE 332 (450)
Q Consensus 268 ~l~~~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd 332 (450)
+.++.+. .|.|.-.+....- ...........+ .++. ....++|+|+|++.++=. .|+.=.|--
T Consensus 153 Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i-p~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~ 230 (347)
T 3das_A 153 LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP-APGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNA 230 (347)
T ss_dssp EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB-CTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEE
T ss_pred EEEEECCCCCCccccCCCCCCCEEEEEeCCCCc-cCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeE
Confidence 4444332 2444444432210 000000000011 1232 346789999877655432 233222222
Q ss_pred cCCCcee----eeCCC-CCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC
Q 041325 333 RDQGNYI----VDGDD-DSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406 (450)
Q Consensus 333 ~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 406 (450)
+..+... ..... ......+...+..+......++|... ++...-..+.|....+..... ..+....+.+.
T Consensus 231 i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~----~~~~e~~l~~~ 306 (347)
T 3das_A 231 IKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAA----AADPQAFLEGE 306 (347)
T ss_dssp ECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEE----SSCCEEESTTT
T ss_pred EcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCce----ecceEEeecCC
Confidence 2333211 00000 00111112222222235577777744 555555556666566553210 01223344555
Q ss_pred CcceEEEEEEecCC
Q 041325 407 RRPVKCLTAVVDSD 420 (450)
Q Consensus 407 ~~~v~~l~~~~~~~ 420 (450)
...+..|+..||+.
T Consensus 307 ~gR~~dv~~~pDG~ 320 (347)
T 3das_A 307 YGRLRTVAPAGGDK 320 (347)
T ss_dssp SSCEEEEEEEETTE
T ss_pred CCCccEEEECCCCc
Confidence 57899999999998
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=87.54 E-value=14 Score=37.38 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=33.9
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (450)
..+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356778888888899999999999999999999888754
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.19 E-value=19 Score=31.75 Aligned_cols=272 Identities=12% Similarity=0.133 Sum_probs=128.8
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEEe--CCeEEEEeCCCeEEEEE
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVVL--GDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~~~dg~i~iw~ 153 (450)
.|..++.-....+.-..||.|..|-....-.+-.... ........+. .....+..++.+ .+..+.-..||.|..|-
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT-ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS-CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc-CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4666666667777777899999996543211100000 0000000011 112234444544 34466667899999997
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
....-.. +............++ . .....|..++.. ....++-..+|.
T Consensus 133 ~n~~GqL-----G~g~~~~~~~p~~v~------------------------~--l~~~~i~~va~G--~~hs~alt~~G~ 179 (389)
T 3kci_A 133 EAEDGKL-----GHGNRSPCDRPRVIE------------------------S--LRGIEVVDVAAG--GAHSACVTAAGD 179 (389)
T ss_dssp CCGGGTT-----CSSSCCCEEEEEECG------------------------G--GTTSCEEEEEEC--SSEEEEEETTSC
T ss_pred CCCCCcC-----CCCCCccCcCCeEec------------------------c--cCCCeEEEEEeC--cCeEEEEeCCCe
Confidence 5432110 000000000000000 0 011245555543 334555567888
Q ss_pred EEEEecCCC-----------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-hhcc-----ccchh
Q 041325 234 FKIWRTSDF-----------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-LQVN-----KKHSL 296 (450)
Q Consensus 234 i~iwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~-----~~~~~ 296 (450)
|..|-.... .....+.......|..++... ...+.++-..||.|..|-..... +... .....
T Consensus 180 v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 258 (389)
T 3kci_A 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMK 258 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEE
T ss_pred EEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEE
Confidence 888864321 111122212234566666532 12456666788999999653321 1000 00111
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS 376 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 376 (450)
+..+ ....|..++.. ....++-..||.|+.|-....-.+-.... .....+..........|..++-...+.+...
T Consensus 259 v~~~--~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~ 333 (389)
T 3kci_A 259 IDSL--TGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSD-DHVRRPRQVQGLQGKKVIAIATGSLHCVCCT 333 (389)
T ss_dssp CGGG--TTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEE
T ss_pred eccc--CCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCC-ccccCCeEeccCCCCCEEEEEeccCeEEEEC
Confidence 1111 12346666654 34555557899999997654221111000 1111111111122345778877777777778
Q ss_pred CCCeEEEeeCCC
Q 041325 377 SDNTIRIWRRSS 388 (450)
Q Consensus 377 ~dg~v~iwd~~~ 388 (450)
.||.|+.|=.+.
T Consensus 334 ~~G~v~~wG~n~ 345 (389)
T 3kci_A 334 EDGEVYTWGDND 345 (389)
T ss_dssp TTCCEEEEECCT
T ss_pred CCCCEEEeeCCC
Confidence 999999997654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=84.73 E-value=19 Score=31.23 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=50.1
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
..+..+. ..-..-..|+| ||+++++--..|.|++++..+++......... +..........|+++|+.
T Consensus 22 ~~~~~va--~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~------v~~~g~~GllGia~~Pdf~~ 93 (347)
T 3das_A 22 KVLRTVA--TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG------VSPSGEGGLLGIALSPDYAS 93 (347)
T ss_dssp EEEEEEE--CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT------CCCBTTBSEEEEEECTTHHH
T ss_pred ceeEEee--cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc------eeecCCCCceeeEecccccc
Confidence 4445554 55667889999 78877777658999999876555322211100 012334578999999852
Q ss_pred ---EEEE---eCCCeEEEEEcCC
Q 041325 140 ---LFSA---HQDHKIRVWKIDN 156 (450)
Q Consensus 140 ---l~s~---~~dg~i~iw~~~~ 156 (450)
|+.. ..++.|.-|.+..
T Consensus 94 ~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 94 DHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp HCEEEEEEECSSSEEEEEEEBCT
T ss_pred CCEEEEEEecCCCCEEEEEEeCC
Confidence 4332 2344555555543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=84.67 E-value=16 Score=33.16 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=24.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
...+.|+|.|+|+++++-...+.|++++..+++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 456799999999977765444578888765543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=83.75 E-value=21 Score=31.01 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=31.1
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.....|+| ||+.|+.+...|.|++++.+. ......... .. ...........|+++|+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~----~~-v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGV----PD-VWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSC----CC-CCCSTTCSEEEEEECTT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCC----cc-cccCCCCCceeEEECCC
Confidence 45678888 677344555679999998532 211110000 00 01122346788999985
|
| >3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A | Back alignment and structure |
|---|
Probab=83.22 E-value=3.6 Score=39.43 Aligned_cols=82 Identities=9% Similarity=0.045 Sum_probs=49.0
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCc-ceeEEecCCCceEEEEEeCCeEEE--EeCCCeEEEE
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDH-ANVVATGNGDAVKSLVVLGDKLFS--AHQDHKIRVW 152 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~l~s--~~~dg~i~iw 152 (450)
..|.|+.++..+++|-+.|.++|+|++.+++++.......... ....+.+...+-.-+...+..+++ -..+|..++|
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~ 301 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMG 301 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEE
Confidence 5688888899999999999999999999999776644421110 000011111111222222333222 2356899999
Q ss_pred EcCCC
Q 041325 153 KIDNN 157 (450)
Q Consensus 153 ~~~~~ 157 (450)
.+...
T Consensus 302 ~l~~~ 306 (729)
T 3f7f_A 302 TLLVD 306 (729)
T ss_dssp EEEC-
T ss_pred EEEEc
Confidence 98654
|
| >1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B | Back alignment and structure |
|---|
Probab=83.01 E-value=25 Score=31.32 Aligned_cols=271 Identities=9% Similarity=0.030 Sum_probs=134.9
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecC--CCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEE
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTD--VGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVW 152 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw 152 (450)
...|..++.-....+.-..||.|+.|-......+-..... ....+.. . .-...|..++...+..+.-..||.|..|
T Consensus 58 ~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~-v-~l~~~i~~va~G~~hs~alt~~G~v~~w 135 (413)
T 1a12_A 58 PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGK-V-ELQEKVVQVSAGDSHTAALTDDGRVFLW 135 (413)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEE-C-CCCSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeE-e-cCCCcEEEEecCCCeEEEEcCCCcEEEe
Confidence 3678888886666666778999999976542211110000 0000100 1 1134788888777777777889999999
Q ss_pred Ec--CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 153 KI--DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 153 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
-. ...-..- ..... ..... +... .....|..++... ...+.-..
T Consensus 136 G~~~n~~GqlG--~~~~~-~~~~~---------------------------P~~v--~~~~~i~~ia~G~--~hs~alt~ 181 (413)
T 1a12_A 136 GSFRDNNGVIG--LLEPM-KKSMV---------------------------PVQV--QLDVPVVKVASGN--DHLVMLTA 181 (413)
T ss_dssp ECEEETTEEEE--SSBBT-BCEEE---------------------------EEEE--CCSSCEEEEEECS--SEEEEEET
T ss_pred eCCcCCCCccC--cCCcc-ccccC---------------------------CEEe--cCCCCEEEEEecC--ceEEEEcC
Confidence 75 2221000 00000 00000 0000 1123455555543 34455567
Q ss_pred CCcEEEEecCCCeEE----------------------EEeecc-----cccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 231 DRTFKIWRTSDFRCL----------------------ESVKNA-----HDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 231 dg~i~iwd~~~~~~~----------------------~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
||.|..|-....-.+ ..+... ....|..|+.- ..+.++-..+|.|..|-.
T Consensus 182 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G---~~hs~alt~~G~v~~wG~ 258 (413)
T 1a12_A 182 DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG---AYFTFAISHEGHVYGFGL 258 (413)
T ss_dssp TSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEE---TTEEEEEETTCCEEEEEC
T ss_pred CCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeC---CCEEEEEeCCCCEEEEeC
Confidence 788888865431110 001100 22456666664 334455568899999975
Q ss_pred cchh-hhcc-----ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 284 LRAA-LQVN-----KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 284 ~~~~-~~~~-----~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
.... +... .....+..+......|..++.. ....++-..||.|+.|-....-.+-..........+ ..+..
T Consensus 259 n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P-~~v~~ 335 (413)
T 1a12_A 259 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIP-TLISR 335 (413)
T ss_dssp CTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEE-EECCS
T ss_pred CCCcCCCCCCCCcccccEEchhccCCCceEEEEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCC-EEecc
Confidence 4321 1000 0111122222212346666654 345555667999999976542111100000111111 11111
Q ss_pred CccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 358 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
-..|..++-...+.+.-..||.|+.|=...
T Consensus 336 -l~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 336 -LPAVSSVACGASVGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp -SSSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred -cCceeEEEECcceEEEEeCCCCEEEecCCC
Confidence 126788877777777778999999996553
|
| >3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.12 E-value=30 Score=31.56 Aligned_cols=277 Identities=10% Similarity=0.087 Sum_probs=133.4
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCC----------------------CcceeEEec-------
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVG----------------------DHANVVATG------- 125 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~----------------------~~~~~~~~~------- 125 (450)
...|..++.-+...+.-..||.|+.|-....-.+-....... .........
T Consensus 66 ~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 357888888777777777899999997644321110000000 000011111
Q ss_pred CCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 126 NGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 126 h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
....|..|+......+.-..||.|..|-......-.......... .......++ .
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~-~~~~P~~v~------------------------~ 200 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIK-IQKTPWKVP------------------------T 200 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBS-CEEEEEECC------------------------C
T ss_pred CCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCc-cccCcEEcc------------------------c
Confidence 235788888877777777889999999852110000000000000 000000000 0
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEE----------ee--cccccceEEEEEeecCCcEEEEEc
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLES----------VK--NAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------~~--~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
.....|..++.. ....+.-..+|.|..|-....-.+.. +. ......|..|+. +....++-.
T Consensus 201 --l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~---G~~hs~alt 273 (473)
T 3of7_A 201 --FSKYNIVQLAPG--KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS---GENHCFALT 273 (473)
T ss_dssp --CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE---CSSEEEEEE
T ss_pred --cCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEec---CCCeEEEEe
Confidence 011236666554 33455556788888886543211100 00 001135666655 344666666
Q ss_pred CCCcEEEEeCcch-hhhccc---------cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 274 ADTKIKVWKKLRA-ALQVNK---------KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 274 ~dg~i~vwd~~~~-~~~~~~---------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
.+|.|..|-.... ++.... ....+.. .....|..++.. ...-++-..||.|+.|-....-.+-...
T Consensus 274 ~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~--~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n~~GqLG~~~ 349 (473)
T 3of7_A 274 KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL--PDNVVIRSIAAG--EHHSLILSQDGDLYSCGRLDMFEVGIPK 349 (473)
T ss_dssp TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC--CTTCCEEEEEEC--SSEEEEEETTSCEEEEEECTTCTTCCCG
T ss_pred cCCCEEEeCCCCCCCcCCCCcccCCceeeccccccc--cCCccEEEEEeC--CCeEEEEeCCCeEEEEECCCCCccCCCc
Confidence 7899999965321 111000 0001111 112346666654 3344555678999999765321110000
Q ss_pred ------------CCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 344 ------------DDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 344 ------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
...........+.. ...|..++-.....++-..||.|+.|=...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~P~~v~~-~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 350 DNLPEYTYKDVHGKARAVPLPTKLNN-VPKFKSVAAGSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp GGCCTTCEECTTSCEEEEEEEEECCS-SCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred cccccccccccCCceeeeccCcccCC-CCceEEEEeCCCeEEEEeCCCcEEEeeCCC
Confidence 00000001111111 126777777777777778999999996553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 450 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-21 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-21 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-19 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-15 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-13 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 9e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-11 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-10 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 5e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.004 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 7e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.003 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.003 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.1 bits (232), Expect = 1e-21
Identities = 70/374 (18%), Positives = 128/374 (34%), Gaps = 35/374 (9%)
Query: 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVV------------ATGNGDAVKSLVVLGD 138
+N +N +++ DH +VV ATG + V
Sbjct: 34 KQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDG 93
Query: 139 KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198
L + D +N ++S + Y + P T +
Sbjct: 94 SLVARLSDDSAANKDPEN----LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINA 258
++K + +L S S + S+ + +D +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 259 IVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTV 318
+ VS + ++ GS D ++VW V + S ++ HK +V ++ + DG
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQS 268
Query: 319 LYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGS 376
+ SG+ DRS+ +W N D + GH +L +A N + SGS
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV-TYIGHKDFVLSVATTQNDEYILSGS 327
Query: 377 SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436
D + W + S + L +L+GHR V + +N +S +
Sbjct: 328 KDRGVLFWDKKSG--------NPLLMLQGHRNSVISV------AVANGSSLGPEYNVFA- 372
Query: 437 SGSLDCEIKIWQIR 450
+GS DC+ +IW+ +
Sbjct: 373 TGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.2 bits (144), Expect = 1e-10
Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 44/205 (21%)
Query: 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLFS 142
GK + GS + +R W+ + + D N TG+ D+V S+V G + S
Sbjct: 217 GKYIAAGSLDRAVRVWDSETG-----FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271
Query: 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202
D +++W + N + +++
Sbjct: 272 GSLDRSVKLWNLQNANN-------------------------------KSDSKTPNSGTC 300
Query: 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262
+ T++ H D V ++A + + + S S DR W L ++ H +++ ++ V+
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVA 359
Query: 263 KS-----NDGFVYTGSADTKIKVWK 282
TGS D K ++WK
Sbjct: 360 NGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.3 bits (225), Expect = 4e-21
Identities = 56/336 (16%), Positives = 114/336 (33%), Gaps = 43/336 (12%)
Query: 124 TGNGDAVKSLVV--LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPT 181
+G+ V ++ + + SA +D I+VW + + G +
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFDHSGK 72
Query: 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD 241
L + + T H VS++++ +G + S S D+T K+W
Sbjct: 73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132
Query: 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301
C+++ H + + + ++ + + S D ++VW L
Sbjct: 133 GYCVKTF-TGHREWVRMVRPNQDGT-LIASCSNDQTVRVWV--------VATKECKAELR 182
Query: 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV-------LKGA 354
+H+ V ++ + + + S G +++ G D +
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT 242
Query: 355 LRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412
L GH + + S + S + D T+R+W + C+ L H V
Sbjct: 243 LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--------RCMKTLNAHEHFVTS 294
Query: 413 LTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448
L D T+ V +GS+D +K+W+
Sbjct: 295 L-------------DFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 85.6 bits (210), Expect = 4e-19
Identities = 54/336 (16%), Positives = 109/336 (32%), Gaps = 56/336 (16%)
Query: 72 KGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129
G+ S + + ++ S + I+ W+ + ++ H + V + D
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK----GHTDSVQDISFDH 69
Query: 130 VKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKC 189
L+ + I ++ S + I + D+ K
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS--ASRDKTIKM 127
Query: 190 FLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK 249
+ + T+ H + V + + DG+L+ S S D+T ++W + C ++
Sbjct: 128 WEVQTG-----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182
Query: 250 NAHDDAINAI-------------------VVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290
H + I S F+ +GS D IK+W
Sbjct: 183 -EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD-------- 233
Query: 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
+ TL H + V + + G + S A D+++ VW+ +
Sbjct: 234 VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM----------- 282
Query: 351 LKGALRGHTKAILCLAV--VSNLLFSGSSDNTIRIW 384
L H + L + + +GS D T+++W
Sbjct: 283 --KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 76.7 bits (187), Expect = 5e-16
Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 10/216 (4%)
Query: 117 DHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERI 176
+ ++V+ +K V H+ V + N S +
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171
Query: 177 ATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKI 236
+ + + + G L S S D+T K+
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231
Query: 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296
W S CL ++ HD+ + ++ S F+ + + D ++VW K
Sbjct: 232 WDVSTGMCLMTLV-GHDNWVRGVLFH-SGGKFILSCADDKTLRVWDY--------KNKRC 281
Query: 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332
++TL H+ VT+L + +G+ D+++ VWE
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 6e-14
Identities = 46/294 (15%), Positives = 84/294 (28%), Gaps = 64/294 (21%)
Query: 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINA 258
R +K H V+ + S++ S S D T K+W ++K H D++
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQD 64
Query: 259 IVVSKSNDGFVYTGSADTKIKVWKKLRAA------------------------------- 287
I S + T +
Sbjct: 65 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 124
Query: 288 --LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345
+ + V+T H+ V + + DGT++ S + D+++ VW + +
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184
Query: 346 SG---------HMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKG 396
L SGS D TI++W S+
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG------- 237
Query: 397 YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
CL L GH V+ + + + S + D +++W +
Sbjct: 238 -MCLMTLVGHDNWVRGVLFHSGGKF-------------ILSCADDKTLRVWDYK 277
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.9 bits (185), Expect = 9e-16
Identities = 23/127 (18%), Positives = 48/127 (37%), Gaps = 8/127 (6%)
Query: 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS 264
T+ H ++A+ +G+ + S D T +++ + L + + + V
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK 280
Query: 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324
+ + G D VW K L H + V+ L ++ DG + +G+
Sbjct: 281 SGRLLLAGYDDFNCNVWDA--------LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 325 DRSILVW 331
D + +W
Sbjct: 333 DSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.6 bits (179), Expect = 6e-15
Identities = 44/326 (13%), Positives = 88/326 (26%), Gaps = 40/326 (12%)
Query: 124 TGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPT 181
G+ + ++ L SA QD K+ +W + +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD 241
+ + ++ R L+ +
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301
++ + + +G+ D K+W ++ QT
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD--------VREGMCRQTFT 223
Query: 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361
H+S + A+ +G +G+ D + +++ ++ D+ +
Sbjct: 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS-------- 275
Query: 362 ILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421
+ + LL +G D +W D K VL GH V CL
Sbjct: 276 -VSFSKSGRLLLAGYDDFNCNVW-------DALKA-DRAGVLAGHDNRVSCL-------- 318
Query: 422 SNRNSDHSSTSFLVYSGSLDCEIKIW 447
+ V +GS D +KIW
Sbjct: 319 -----GVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.6 bits (127), Expect = 2e-08
Identities = 43/292 (14%), Positives = 81/292 (27%), Gaps = 71/292 (24%)
Query: 197 QVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAI 256
+++ + T H+ + A+ +D LL S S D IW + + ++ +
Sbjct: 42 RIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 257 NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK----------------------- 293
+ S + G + K R +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS 160
Query: 294 -------------HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340
T H V +L+L+ D + SGACD S +W+ +G
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM--- 217
Query: 341 DGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYS 398
+ GH I + N +GS D T R++ + +
Sbjct: 218 ----------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267
Query: 399 CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
+ ++ S + L+ +G D +W
Sbjct: 268 N------IICGITSVS-------------FSKSGRLLLAGYDDFNCNVWDAL 300
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.1 bits (105), Expect = 8e-06
Identities = 31/179 (17%), Positives = 49/179 (27%), Gaps = 55/179 (30%)
Query: 61 SEHQCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDH 118
E C T G+ S I ++ G GS + R ++ + + S D
Sbjct: 214 REGMCRQTFT--GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC 271
Query: 119 ANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIAT 178
+ + G L + + D VW +R
Sbjct: 272 GITSVSFSKS--------GRLLLAGYDDFNCNVWDALKA----------------DRAGV 307
Query: 179 LPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIW 237
L H + VS L ++ DG + + SWD KIW
Sbjct: 308 LA---------------------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.5 bits (181), Expect = 1e-15
Identities = 53/313 (16%), Positives = 93/313 (29%), Gaps = 32/313 (10%)
Query: 72 KGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131
S + L + + G + I+ W+++ I TG+ +V
Sbjct: 12 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL------------TGHTGSVL 59
Query: 132 SLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFL 191
L + + D +RVW ++ + + + +
Sbjct: 60 CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV 119
Query: 192 ANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251
+ + V H V+ + + S S DRT K+W TS + ++
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGH 177
Query: 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311
I + D V +GS+D I++W A +
Sbjct: 178 K----RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF------- 226
Query: 312 LSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL 371
D + SGA D I VW+ L H+ + L
Sbjct: 227 ---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE----HSGRVFRLQFDEFQ 279
Query: 372 LFSGSSDNTIRIW 384
+ S S D+TI IW
Sbjct: 280 IVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.3 bits (152), Expect = 8e-12
Identities = 59/325 (18%), Positives = 99/325 (30%), Gaps = 45/325 (13%)
Query: 124 TGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLN 183
+ V L K+ S +D+ I++W + L +
Sbjct: 12 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR-----ILTGHTGSVLCLQYDER 66
Query: 184 DRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243
T + V + + L L + ++ + S DR+ +W +
Sbjct: 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126
Query: 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303
+ + VV + + S D IKVW V+TL H
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYI-VSASGDRTIKVWN--------TSTCEFVRTLNGH 177
Query: 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363
K + L ++ SG+ D +I +W D L GH + +
Sbjct: 178 KRGIACL--QYRDRLVVSGSSDNTIRLW-------------DIECGACLRVLEGHEELVR 222
Query: 364 CLAVVSNLLFSGSSDNTIRIWR-RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYS 422
C+ + + SG+ D I++W ++ G CL L H V L
Sbjct: 223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL--------- 273
Query: 423 NRNSDHSSTSFLVYSGSLDCEIKIW 447
F + S S D I IW
Sbjct: 274 ------QFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (136), Expect = 1e-09
Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 7/134 (5%)
Query: 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAI 259
+ + L L+ S S D T ++W CL ++ +
Sbjct: 166 STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC-- 223
Query: 260 VVSKSNDGFVYTGSADTKIKVWKKLRAA-LQVNKKHSLVQTLEKHKSAVTALALSTDGTV 318
+ ++ + +G+ D KIKVW + A + ++TL +H V L D
Sbjct: 224 --IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQ 279
Query: 319 LYSGACDRSILVWE 332
+ S + D +IL+W+
Sbjct: 280 IVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 6e-04
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 17/74 (22%)
Query: 293 KHSL--VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350
+HSL + + V L D + SG D +I +W+++
Sbjct: 2 RHSLQRIHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLE------------- 46
Query: 351 LKGALRGHTKAILC 364
K L GHT ++LC
Sbjct: 47 CKRILTGHTGSVLC 60
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 69.9 bits (169), Expect = 1e-13
Identities = 42/354 (11%), Positives = 111/354 (31%), Gaps = 31/354 (8%)
Query: 72 KGNSSYIPSLAIAGKLLYGGSSNGEIRAWN---RDPNNYVNITSTDVGDHANVVATGNGD 128
K + + I S++ S +G ++ W+ D N + + + + +
Sbjct: 11 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 129 AVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTK 188
A++ + + + ++I + K+ + + + + + +
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDE-----TKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 189 CFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248
+ A+N + T V + +D S + +W T ++ T
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV------ES 179
Query: 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308
+ V S G + TG + +++ + + ++ + +++
Sbjct: 180 PMTPSQFATS--VDISERGLIATGFNNGTVQISELSTL--RPLYNFESQHSMINNSNSIR 235
Query: 309 ALALSTDGTVLYSGACDRSILV---WERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365
++ S G++L S +E + G I + H+ ++ L
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295
Query: 366 AV--VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417
+ L S D +R W D + + L H ++ ++
Sbjct: 296 SFNDSGETLCSAGWDGKLRFW-------DVKTK-ERITTLNMHCDDIEIEEDIL 341
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.8 bits (148), Expect = 5e-11
Identities = 35/353 (9%), Positives = 89/353 (25%), Gaps = 66/353 (18%)
Query: 122 VATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPT 181
+ + S+ S D ++VW
Sbjct: 9 AGKAHDADIFSVSACNSFTVSCSGDGYLKVW----------------------------- 39
Query: 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTS 240
D + +HHVD + A+ + + L+ +TS+ +R +
Sbjct: 40 --DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRIT 97
Query: 241 DFRCLESVKN---------AHDDAINAIVVSKSNDGFVY----TGSADTKIKVW------ 281
+ V + A+ SND + +W
Sbjct: 98 REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA 157
Query: 282 ----KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337
+ V++ T++ +S G + +G + ++ + E
Sbjct: 158 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLR 216
Query: 338 YIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGY 397
+ + + + ++R + +LL N+ +
Sbjct: 217 PLYNFESQHSMINNSNSIRSVKFSPQG-----SLLAIAHDSNSFGCITL-----YETEFG 266
Query: 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
+ L + + + + + S D +++ W ++
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 1e-11
Identities = 39/329 (11%), Positives = 81/329 (24%), Gaps = 23/329 (6%)
Query: 72 KGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129
+ YI + I LL S +G + + D + ++ D
Sbjct: 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67
Query: 130 VKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKC 189
+ +G + I T+ + KY + + +
Sbjct: 68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127
Query: 190 FLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK 249
N V K + + ++ S L + + +R
Sbjct: 128 DPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTI 187
Query: 250 NAHDDAINAI--VVSKSNDGFVYTGSADTKIKVW-------KKLRAALQVNKKHSLVQTL 300
+ S D ++ V + + H L
Sbjct: 188 EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247
Query: 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360
V ++ S LY+ D I W +K + +
Sbjct: 248 TNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK------------KIKNFAKFNED 295
Query: 361 AILCLAVVSNLLFSGSSDNTIRIWRRSSS 389
+++ +A N+L +SD+T +
Sbjct: 296 SVVKIACSDNILCLATSDDTFKTNAAIDQ 324
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 9e-08
Identities = 17/129 (13%), Positives = 44/129 (34%), Gaps = 15/129 (11%)
Query: 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD 241
+D+ + + + V+++ S LY+ D W
Sbjct: 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
Query: 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301
+ +++ ++D++ ++ S++ S DT K + QT+E
Sbjct: 283 RKKIKNFAKFNEDSVVK--IACSDNILCLATSDDT-FKTNAA------------IDQTIE 327
Query: 302 KHKSAVTAL 310
+ S++ +
Sbjct: 328 LNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 16/107 (14%), Positives = 39/107 (36%), Gaps = 13/107 (12%)
Query: 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355
+VQ + K ++ + + ++L + D S+ V+ D + ++ L +L
Sbjct: 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY---------KFDIQAKNVDLLQSL 53
Query: 356 RGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
+ +LC + N ++ G+ I S + +
Sbjct: 54 -RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE 99
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.0 bits (107), Expect = 5e-06
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307
++ A D I+ I + S + S D + V+K + K+ + ++K +
Sbjct: 6 IEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYK-----FDIQAKNVDLLQSLRYKHPL 59
Query: 308 TALALS-TDGTVLYSGACDRSILVW 331
+Y G IL
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKV 84
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.9 bits (151), Expect = 2e-11
Identities = 62/389 (15%), Positives = 126/389 (32%), Gaps = 56/389 (14%)
Query: 60 ASEHQCSATLKVKGNSSYIPS-LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDH 118
E + LK G+ ++ + L G + GS + ++ W+ +
Sbjct: 3 RGELKSPKVLK--GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------- 51
Query: 119 ANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIAT 178
G+ V S + + + S D ++VW + + +
Sbjct: 52 ---TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE- 107
Query: 179 LPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWR 238
+ A V +C V + + DG + S ++D K+W
Sbjct: 108 ----KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD 163
Query: 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298
CL +++ + + + + V +GS DT I+VW + + +
Sbjct: 164 PETETCLHTLQGHTNRVYS----LQFDGIHVVSGSLDTSIRVWD--------VETGNCIH 211
Query: 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358
TL H+S + + L +L SG D ++ +W+ G + H
Sbjct: 212 TLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP----------NKH 259
Query: 359 TKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418
A+ CL N + + S D T+++W + G V +
Sbjct: 260 QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL---VTLESGGSGGVVWRI----- 311
Query: 419 SDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447
SN + S +G+ + ++ +
Sbjct: 312 -RASNTKLVCAVGS---RNGTEETKLLVL 336
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 46/256 (17%), Positives = 80/256 (31%), Gaps = 39/256 (15%)
Query: 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H D V L G+ + S S D T K+W +CL ++ H + + + +
Sbjct: 15 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDNIIIS 72
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA-------LALSTDGTVLYS 321
T ++ K V+ + G L+
Sbjct: 73 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV 132
Query: 322 GACDRSILVWERDQGNYIVDGDDDS-------GHMVLKGALRGHTKAILCLAVVSNLLFS 374
+ + + G +V G D L+GHT + L + S
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVS 192
Query: 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434
GS D +IR+W + +C+ L GH+ + +
Sbjct: 193 GSLDTSIRVW--------DVETGNCIHTLTGHQSLTSGM---------------ELKDNI 229
Query: 435 VYSGSLDCEIKIWQIR 450
+ SG+ D +KIW I+
Sbjct: 230 LVSGNADSTVKIWDIK 245
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (145), Expect = 1e-10
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH 252
+ V + K H V +L + G ST D WRT + ++
Sbjct: 248 VEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKE 305
Query: 253 DDAINAIVVSKSNDGFVYTGSADTKIKVWK 282
++ + +S +D ++ TGS D K V++
Sbjct: 306 SSSVLSCDIS-VDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 30/271 (11%), Positives = 73/271 (26%), Gaps = 24/271 (8%)
Query: 64 QCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANV 121
+ L +YI S + G L G + W+ A
Sbjct: 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY 145
Query: 122 VATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPT 181
+ D+ D + H + + + S +
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG--- 202
Query: 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD 241
D + + Q+++H + + + G L ++ +
Sbjct: 203 -LDNTVRSWDLREGRQLQQHDFTSQIFSL------GYCPTGEWLAVGMESSNVEVLHVNK 255
Query: 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301
+ H+ + ++ + + + D + W+ + +
Sbjct: 256 PDK--YQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRT--------PYGASIFQS- 303
Query: 302 KHKSAVTALALSTDGTVLYSGACDRSILVWE 332
K S+V + +S D + +G+ D+ V+E
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 5e-06
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 8/135 (5%)
Query: 205 TWVHHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK 263
+ +++DG + D R + ++ H + + A+ +S
Sbjct: 4 QGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL--NHGEVVCAVTIS- 60
Query: 264 SNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA 323
+ VYTG +KVW + NK + + + L DG L G
Sbjct: 61 NPTRHVYTGG-KGCVKVWD---ISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116
Query: 324 CDRSILVWERDQGNY 338
++ +W+
Sbjct: 117 EASTLSIWDLAAPTP 131
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK----NAHDD 254
R ++ ++H + V A+ +S+ +Y+ K+W S V D+
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN 98
Query: 255 AINAIVVSKSNDGFVYTGS 273
I + + + G
Sbjct: 99 YIRSCKLLPDGCTLIVGGE 117
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 5e-05
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355
+ TL H V A+ +S +Y+G + VW+ V +
Sbjct: 44 QINTLN-HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNK--------SPVSQLDC 93
Query: 356 RGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
I ++ + L G +T+ IW ++ + +
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 8e-05
Identities = 36/287 (12%), Positives = 67/287 (23%), Gaps = 43/287 (14%)
Query: 184 DRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243
K + ++ + ++ + + + L DG L T IW +
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303
+ + + ++ +D I VW L +
Sbjct: 131 PRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCID 190
Query: 304 KSAVTAL--ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG---- 357
S D TV + L G +G + G
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV 250
Query: 358 -------------HTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV 402
H +L L S DN + WR + +
Sbjct: 251 LHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--------ASIFQ 302
Query: 403 LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
V VD Y + +GS D + ++++
Sbjct: 303 S-KESSSVLSCDISVDDKY-------------IVTGSGDKKATVYEV 335
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 60.5 bits (145), Expect = 1e-10
Identities = 19/239 (7%), Positives = 56/239 (23%), Gaps = 6/239 (2%)
Query: 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275
AL + + T++ + + +S +++ N +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335
I + +L + ++ + A+S DG +Y+ L
Sbjct: 62 GDIYGID--LDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119
Query: 336 GN---YIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT- 391
+ D ++ ++ A +L +G + + +V
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVAL 179
Query: 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450
+ + + + + L ++
Sbjct: 180 PLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 36/288 (12%), Positives = 65/288 (22%), Gaps = 30/288 (10%)
Query: 63 HQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRD-PNNYVNITSTDVGDHANV 121
S+ G S Y +++ GK +Y + + + + + ST G A
Sbjct: 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137
Query: 122 VATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPT 181
V T L+ D I + K Y
Sbjct: 138 VRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGY-------- 189
Query: 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD 241
L Q RH+ D + +
Sbjct: 190 ----SAPDVLYFWPHQSPRHEFSMLYTIARFKD------DKQDPATADLLYGYLSVDLKT 239
Query: 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301
+ + + D G + + + K+ L++
Sbjct: 240 GKTHTQEFADLTELYFT-GLRSPKDPNQIYGVLNR-LAKYDL--------KQRKLIKAAN 289
Query: 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349
+A G LY G + V+ D + + G M
Sbjct: 290 -LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.6 bits (96), Expect = 1e-04
Identities = 31/320 (9%), Positives = 69/320 (21%), Gaps = 17/320 (5%)
Query: 79 PSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHAN-----------VVATGNG 127
P+L + + + + + + V +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 128 DAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFT 187
+ + + K + + S S GK L
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 188 KCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIW---RTSDFRC 244
+ K V + + DGSL + + T
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304
+ + + ++ K A L L+ K
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK 241
Query: 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364
+ A T+ + ++ D ++K A HT +
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQ---RKLIKAANLDHTYYCVA 298
Query: 365 LAVVSNLLFSGSSDNTIRIW 384
+ L+ G + N + ++
Sbjct: 299 FDKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 38.6 bits (88), Expect = 0.001
Identities = 20/284 (7%), Positives = 59/284 (20%), Gaps = 44/284 (15%)
Query: 207 VHHVDTVSALALSSDGSLLY-STSWDRTFKIWRTSDFRCLESVKNA-----HDDAINAIV 260
+ ++ D Y + + + ++ +
Sbjct: 36 MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA 95
Query: 261 VSKSNDGFVYTGSADTKIKVWKKLRAALQV----NKKHSLVQTLEKHKS--AVTALALST 314
+S + VY T+ + ++ + + V + +
Sbjct: 96 IS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 154
Query: 315 DGTVLYSGACDRSILVWERDQGNYIVDGDDDS-------GHMVLKGALRGHTKAILCLAV 367
DG++ +G + V + + + H ++L
Sbjct: 155 DGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 214
Query: 368 VSN----LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSN 423
+ + T Q+ + R K +
Sbjct: 215 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRL 274
Query: 424 RNSDHSSTSFL--------------------VYSGSLDCEIKIW 447
D + +Y G ++ ++
Sbjct: 275 AKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVF 318
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.7 bits (140), Expect = 5e-10
Identities = 45/381 (11%), Positives = 107/381 (28%), Gaps = 55/381 (14%)
Query: 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLFS 142
+ +N E+ + + N +V + + V + +++ +
Sbjct: 19 RTQIAICPNNHEVHIYEKSGNKWVQVH----------ELKEHNGQVTGVDWAPDSNRIVT 68
Query: 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202
D VW + T ++ + +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 203 KCTWVHHVD-----TVSALALSSDGSLLYSTSWDRTFKIW----RTSDFRCLESVKNAHD 253
H+ TV +L + LL + S D +I+ + + R + +
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN----KKHSLVQTLEKHKSAVTA 309
+ S S+ G+V+ + V K V TL + A
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLA 248
Query: 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369
+ T+ +++ +G D +++ D +G + G L ++
Sbjct: 249 VTFITESSLVAAGH-DCFPVLF---------TYDSAAGKLSFGGRLDVPKQSSQ------ 292
Query: 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHS 429
++ + + +S + L H+ V ++ + S
Sbjct: 293 ---RGLTARERFQNLDKKASSEGSAAAGAGL--DSLHKNSVSQISVL---------SGGK 338
Query: 430 STSFLVYSGSLDCEIKIWQIR 450
+ + +D + IW +R
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVR 359
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.1 bits (128), Expect = 1e-08
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSND 266
V+ +S A + D + + + I+ S + H+ + + + +
Sbjct: 5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DS 63
Query: 267 GFVYTGSADTKIKVW 281
+ T D VW
Sbjct: 64 NRIVTCGTDRNAYVW 78
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362
++ A + D T + + + ++ + V L+ H +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIY-----------EKSGNKWVQVHELKEHNGQV 54
Query: 363 LCLAVV--SNLLFSGSSDNTIRIW 384
+ SN + + +D +W
Sbjct: 55 TGVDWAPDSNRIVTCGTDRNAYVW 78
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.6 bits (124), Expect = 4e-08
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313
+ I+ +K + + ++ +++K K V L++H VT + +
Sbjct: 8 EPISCHAWNKDRT-QIAICPNNHEVHIYEK------SGNKWVQVHELKEHNGQVTGVDWA 60
Query: 314 TDGTVLYSGACDRSILVWERDQGNY 338
D + + DR+ VW +
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLKGRTW 85
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 1e-08
Identities = 36/199 (18%), Positives = 62/199 (31%), Gaps = 20/199 (10%)
Query: 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311
H ++ + + D +V TG+ D I+V+ + L H V AL
Sbjct: 11 HMTSVITCL--QFEDNYVITGADDKMIRVYDS--------INKKFLLQLSGHDGGVWALK 60
Query: 312 LSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL 371
+ G ++ + + V +S L + K I+
Sbjct: 61 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT------- 113
Query: 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSST 431
GS DNT+ +W+ + G L H V + S
Sbjct: 114 ---GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170
Query: 432 SFLVYSGSLDCEIKIWQIR 450
+V SGS D + +W +
Sbjct: 171 GNIVVSGSYDNTLIVWDVA 189
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 7e-08
Identities = 10/89 (11%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH 252
+ + +H +SA+ + + + F I+ + + +
Sbjct: 264 SIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKD 323
Query: 253 DDAINAIVVSKSNDGFVYTGSADTKIKVW 281
D I + V+ V D + +
Sbjct: 324 ADQIWS--VNFKGKTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 2e-07
Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 8/231 (3%)
Query: 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVV 261
++ T H+ +V L + + + + + D+ +++ + + + L + HD + A+
Sbjct: 4 QRTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKY 61
Query: 262 SKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV----TALALSTDGT 317
++ G + +GS D ++VW + + + S D T
Sbjct: 62 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119
Query: 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS 377
+ S + ++ +Y + + G LRGH ++ ++ N++ SGS
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179
Query: 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
DNT+ +W + + + + D + R D
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 20/254 (7%), Positives = 61/254 (24%), Gaps = 19/254 (7%)
Query: 143 AHQDHKIRVWKIDNNTSA------YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196
+D+ + VWK+ +S + + + + + + +
Sbjct: 114 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173
Query: 197 QVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAI 256
V T + G S + R +++ +
Sbjct: 174 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG 233
Query: 257 NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316
+ + + V K V +++ + + H + ++A+
Sbjct: 234 ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS 293
Query: 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSG 375
+ + ++ G ++ + I + L+ +
Sbjct: 294 DNILVSGSENQFNIYNLRSGK------------LVHANILKDADQIWSVNFKGKTLVAAV 341
Query: 376 SSDNTIRIWRRSSS 389
D + S
Sbjct: 342 EKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.6 bits (85), Expect = 0.002
Identities = 46/375 (12%), Positives = 103/375 (27%), Gaps = 37/375 (9%)
Query: 74 NSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133
+S I L + G+ + IR ++ ++ +G+ V +L
Sbjct: 12 MTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL------------QLSGHDGGVWAL 59
Query: 134 VVL-GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA 192
G L S D +RVW I + + + +
Sbjct: 60 KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 119
Query: 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH 252
+ ++ + + + + + + RT V ++
Sbjct: 120 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 179
Query: 253 DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312
D+ + V++ ++ +G D ++ T+ L
Sbjct: 180 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD--TTIRIWDLENGELMY 237
Query: 313 STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLL 372
+ G G S + + G D + + + AI V N+L
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 297
Query: 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432
SGS +N I+ + + G A + + + ++ +
Sbjct: 298 VSGS-ENQFNIY-------NLRSGKLVHANILKDADQIWSV------NFKGKT------- 336
Query: 433 FLVYSGSLDCEIKIW 447
LV + D + +
Sbjct: 337 -LVAAVEKDGQSFLE 350
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 1e-08
Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 6/246 (2%)
Query: 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF 268
H ++AL+ S+DG L+S + W S + H I I +
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG--D 68
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV----TALALSTDGTVLYSGAC 324
++T S D +KV + + +K + + + AV + +
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIW 384
+ + + + D + + + K + + ++
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 385 RRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444
+ + + + + + + S + + +GSLD +
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 248
Query: 445 KIWQIR 450
+W +
Sbjct: 249 IVWNMN 254
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 9e-08
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354
S+ Q H A+TAL+ S DG L+S + I W+ G +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI------------SNRVF 50
Query: 355 LRGHTKAILCLAVVSNL-LFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
H I + S LF+ S D+ +++ S D K +
Sbjct: 51 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 96
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 2e-04
Identities = 46/319 (14%), Positives = 93/319 (29%), Gaps = 36/319 (11%)
Query: 72 KGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129
G++ I +L+ + GK L+ + G I +W+ G V +
Sbjct: 9 YGHNKAITALSSSADGKTLFSADAEGHINSWD-----------ISTGISNRVFPDVHATM 57
Query: 130 VKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTK 188
+ + LF+ D ++V + + +A +
Sbjct: 58 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAA 117
Query: 189 CFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248
C+ + + ++ S +ALS+D + D +++ S E
Sbjct: 118 CYKHIAIYSHGKLTEVPISYNS---SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK 174
Query: 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308
H I ++ S + V T + I L + S
Sbjct: 175 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234
Query: 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368
D L +G+ D S++VW + + H + + +
Sbjct: 235 ------DNVRLATGSLDNSVIVW-----------NMNKPSDHPIIIKGAHAMSSVNSVIW 277
Query: 369 SN--LLFSGSSDNTIRIWR 385
N + S D+ I+ W
Sbjct: 278 LNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.4 bits (87), Expect = 0.001
Identities = 40/330 (12%), Positives = 81/330 (24%), Gaps = 41/330 (12%)
Query: 122 VATGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATL 179
V G+ A+ +L G LFSA + I W I
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----------------ISNRVF 50
Query: 180 PTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239
P ++ + + + V + SS +S +
Sbjct: 51 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD 110
Query: 240 SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299
D K+ + + Y S + + Q +K H +
Sbjct: 111 GDIAVAACYKHIAIYSHGKLT----EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLS 166
Query: 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359
T + + +V +S + + + ++
Sbjct: 167 GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 226
Query: 360 KAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS 419
A + + + L +GS DN++ +W + + + V +
Sbjct: 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKP-----SDHPIIIKGAHAMSSVNSVI----- 276
Query: 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449
+ S D IK W +
Sbjct: 277 ---------WLNETTIVSAGQDSNIKFWNV 297
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.3 bits (126), Expect = 2e-08
Identities = 32/318 (10%), Positives = 69/318 (21%), Gaps = 35/318 (11%)
Query: 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKI 149
++ + + + + D G N V +G + + ++ + +
Sbjct: 23 HFAAVTQQFVIDGEAGRVI--GMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYV 80
Query: 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLAN---------------N 194
V+ + +L
Sbjct: 81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA 140
Query: 195 YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDD 254
+ ++ C + + DGSL E +
Sbjct: 141 FKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-----TEVFHPEDEF 195
Query: 255 AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL----VQTLEKHKSAVTAL 310
IN S G + + KI + + +
Sbjct: 196 LINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254
Query: 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370
A +Y R + ++V D +G + A I + V +
Sbjct: 255 AYHRALDRIYLLVDQRDEWRH-KTASRFVVVLDAKTGERL---AKFEMGHEIDSINVSQD 310
Query: 371 ----LLFSGSSDNTIRIW 384
L + D T+ I
Sbjct: 311 EKPLLYALSTGDKTLYIH 328
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 2e-08
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH 252
+ R K A + L+ + S D I+ + NAH
Sbjct: 198 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 257
Query: 253 DDAINAIVVSKSNDGFVYTGSADTKIKVWK 282
D +N ++ + + AD IK W
Sbjct: 258 KDGVNNLLW--ETPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 1e-07
Identities = 34/290 (11%), Positives = 82/290 (28%), Gaps = 42/290 (14%)
Query: 124 TGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNN--------TSAYYSTSGKL------- 168
+G+ + +L V + L S D +I W + S S + +
Sbjct: 10 SGHNKGITALTV--NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDD 67
Query: 169 ----------KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218
+ ++A+ + + +++ +
Sbjct: 68 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVS 127
Query: 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN--DGFVYTGSADT 276
S + T ++++ SD +K + I +S S
Sbjct: 128 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKIL 187
Query: 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG 336
+ + + + S + + + A + ++ +G+ D +I ++ +
Sbjct: 188 LYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247
Query: 337 NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWR 385
I+ AL H + L + L S +D I+ W
Sbjct: 248 MKII------------KALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.3 bits (110), Expect = 2e-06
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 355 LRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407
+ GH K I L V N L SGS D I W SS DH L +
Sbjct: 9 ISGHNKGITALTV--NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQE 59
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.6 bits (124), Expect = 4e-08
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 1/89 (1%)
Query: 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH 252
V V H +V L S DG+ + S S D+T KIW + + +++
Sbjct: 221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 280
Query: 253 DDAINAIVVSKSNDGFVYTGSADTKIKVW 281
+ + + V + SA+ I
Sbjct: 281 RIEDQQLGIIWTKQALV-SISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.6 bits (98), Expect = 5e-05
Identities = 28/264 (10%), Positives = 58/264 (21%), Gaps = 13/264 (4%)
Query: 124 TGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYS-TSGKLKNKYYERIATLP 180
T + G S +R+W T + +
Sbjct: 55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES 114
Query: 181 TLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240
+ +V + + ++ S +
Sbjct: 115 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 174
Query: 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300
+ + + V + DG ++ + V +
Sbjct: 175 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN 234
Query: 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360
H +V L S DGT + S + D++I +W +
Sbjct: 235 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIED---------- 284
Query: 361 AILCLAVVSNLLFSGSSDNTIRIW 384
L + L S S++ I
Sbjct: 285 QQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.3 bits (87), Expect = 0.001
Identities = 9/95 (9%), Positives = 18/95 (18%), Gaps = 16/95 (16%)
Query: 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366
L + G + S+ H+
Sbjct: 20 AVVLGNTPAGDKIQY-CNGTSVYTVPVGSLT-------------DTEIYTEHSHQTTVAK 65
Query: 367 VVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399
+ SG +RIW + + +
Sbjct: 66 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.0 bits (86), Expect = 0.002
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 13/100 (13%)
Query: 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298
T+ F L A+V+ + G T + + +
Sbjct: 6 TALFPSLPRTARGT-----AVVLGNTPAGDKIQYCNGTSVYTVPV--------GSLTDTE 52
Query: 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNY 338
+H T S G SG ++ +W+ Q +
Sbjct: 53 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.8 bits (83), Expect = 0.004
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 20/79 (25%)
Query: 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428
+ S S+D TI+IW ++ + R ++ +
Sbjct: 250 GTKIASASADKTIKIWNVAT--------LKVEKTIPVGTRIEDQQLGIIWTKQ------- 294
Query: 429 SSTSFLVYSGSLDCEIKIW 447
+ S S + I
Sbjct: 295 -----ALVSISANGFINFV 308
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.0 bits (120), Expect = 1e-07
Identities = 24/308 (7%), Positives = 62/308 (20%), Gaps = 31/308 (10%)
Query: 86 KLLYGGSSNGE-IRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAH 144
G+ G+ + ++ A V + + ++V
Sbjct: 56 VAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGV---DRNGKFAVVANDRFEIMTV 112
Query: 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204
+ I+ + A + N + + A + + K
Sbjct: 113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF 172
Query: 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN------AHDDAINA 258
A A +D LY S+ V + + N
Sbjct: 173 AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP 232
Query: 259 IVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTV 318
+ + + + ++ LE +
Sbjct: 233 TKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAY 290
Query: 319 LYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGS 376
+L ++ + + L + ++ +
Sbjct: 291 YQGAPEKGVLLKYDVK-----------------TRKVTEVKNNLTDLRLSADRKTVMVRK 333
Query: 377 SDNTIRIW 384
D I +
Sbjct: 334 DDGKIYTF 341
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 15/148 (10%), Positives = 37/148 (25%), Gaps = 17/148 (11%)
Query: 194 NYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT---FKIWRTSDFRCLESVKN 250
N+ K + + L + +D + + +
Sbjct: 211 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMII 270
Query: 251 AHDDAINAIVVSKSNDGFVY--TGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308
+ +I V + Y + + + + + K+ +T
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT------------RKVTEVKNNLT 318
Query: 309 ALALSTDGTVLYSGACDRSILVWERDQG 336
L LS D + D I + ++
Sbjct: 319 DLRLSADRKTVMVRKDDGKIYTFPLEKP 346
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.8 bits (96), Expect = 1e-04
Identities = 18/168 (10%), Positives = 41/168 (24%), Gaps = 9/168 (5%)
Query: 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSA- 143
K LY S + +R N+ + V + ++ + S
Sbjct: 190 SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP-----FVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 144 ---HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200
+ + N Y L++ + + + +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304
Query: 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248
K + ++ L LS+D + D + +V
Sbjct: 305 VKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.7 bits (88), Expect = 0.001
Identities = 18/232 (7%), Positives = 48/232 (20%), Gaps = 14/232 (6%)
Query: 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVV 261
V + + D + + + + + A+ V
Sbjct: 34 TYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGV 93
Query: 262 SKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS-LVQTLEKHKSAVTALALSTDGTVLY 320
++ V + V + + + ++ ++
Sbjct: 94 DRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGET 153
Query: 321 SGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNT 380
G ++I V++ + ++S L+ S +
Sbjct: 154 DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN------------LYYLSYRSL 201
Query: 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432
R + S V+ V S S +
Sbjct: 202 DPSPDRVVLNFSFEVV-SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 5e-07
Identities = 10/91 (10%), Positives = 27/91 (29%), Gaps = 1/91 (1%)
Query: 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NA 251
+ V D + D T ++W + +C++ +
Sbjct: 234 DGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK 293
Query: 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282
+ V + +G + + S D + ++
Sbjct: 294 QQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (106), Expect = 5e-06
Identities = 18/263 (6%), Positives = 59/263 (22%), Gaps = 24/263 (9%)
Query: 212 TVSALALSSDGSLLYSTSWDRTF-KIWRTSD--FRCLESVKNAHDDAINAIVVSKSNDG- 267
+ L+ + + F + D + + + S
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327
++ +G K+ VW + + ++ + ++ ++ +G L R
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387
+ G+ + ++ + + V + +
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198
Query: 388 SSVTDHQKGYSCLAVLEGHRR--------------------PVKCLTAVVDSDYSNRNSD 427
+ + +K + + +
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258
Query: 428 HSSTSFLVYSGSLDCEIKIWQIR 450
S + D I++W +
Sbjct: 259 SWLDSQKFATVGADATIRVWDVT 281
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.0 bits (99), Expect = 4e-05
Identities = 42/314 (13%), Positives = 80/314 (25%), Gaps = 36/314 (11%)
Query: 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQ 145
+ Y + +R + D ++ V G ++VV T S + L S +
Sbjct: 31 AIAYPCGKSAFVRCLD-DGDSKVPPVVQFTGHGSSVVTT----VKFSPIKGSQYLCSGDE 85
Query: 146 DHKIRVWKIDNNTSAY-----YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200
K+ VW + + + ++ I+ +N+
Sbjct: 86 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFIS 145
Query: 201 HKKCTWVHHVD-------TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHD 253
+ V S+ F F + +
Sbjct: 146 WDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 205
Query: 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313
+ + S + FV T +D KI + + +
Sbjct: 206 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW----- 260
Query: 314 TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---N 370
D + D +I VW D + V K L + VV+
Sbjct: 261 LDSQKFATVGADATIRVW-----------DVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 309
Query: 371 LLFSGSSDNTIRIW 384
+ S S D T+ +
Sbjct: 310 RIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 6e-04
Identities = 11/115 (9%), Positives = 32/115 (27%), Gaps = 13/115 (11%)
Query: 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362
++ T L+ + + + D + + +GH + +
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH---------GSSVV 66
Query: 363 LCLAVV----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCL 413
+ S L SG + +W + + + + + P+ +
Sbjct: 67 TTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.8 bits (115), Expect = 7e-07
Identities = 33/362 (9%), Positives = 83/362 (22%), Gaps = 48/362 (13%)
Query: 47 LAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNN 106
+A S++ A A+ C S+I G W
Sbjct: 5 VAGSAAAASAAAASDGSSCDHGPGAISRRSHIT---------LPAYFAGTTENWVSCAGC 55
Query: 107 YVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSG 166
V + + + VA +G + + + V+
Sbjct: 56 GVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIEL 114
Query: 167 KLKNKYYERIATLPTLNDRFTKCFLANNY---------------VQVRRHKKCTWVHHVD 211
++ N + C L + Q+ + C +H
Sbjct: 115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA 174
Query: 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT 271
+ S SL S A + + A + G +
Sbjct: 175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQ-----CTGAQNCSSQA--AQANYPGMLVW 227
Query: 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331
A + ++ ++ ++S A + G + + + ++
Sbjct: 228 AVAS-------SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI 280
Query: 332 ERDQGNYIVDGDDDSGHMVLKGALR-----GHTKAILCLAVVSN----LLFSGSSDNTIR 382
+ + ++ V + + + + + + +
Sbjct: 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD 340
Query: 383 IW 384
I+
Sbjct: 341 IY 342
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 19/309 (6%), Positives = 66/309 (21%), Gaps = 41/309 (13%)
Query: 60 ASEHQCSATLKVKGNSSYIPSLAIA--GKLLY-GGSSNGEIRAWNRDPNNYVNITSTDVG 116
+ + + +A G++ Y + + + + +
Sbjct: 18 TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP 77
Query: 117 --------------DHANVVATGNGDAVKSLVVLGDKLFSAHQD-----HKIRVWKIDNN 157
D + + ++ A D +
Sbjct: 78 EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI 137
Query: 158 TSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ-------VRRHKKCTWVHHV 210
T ++ G + + + ++ V V
Sbjct: 138 TMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197
Query: 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVY 270
D T++ + D +
Sbjct: 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-AMREVRIMDVFYFSTAVNPAKTRAF 256
Query: 271 TGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILV 330
++ + +K++ ++ + + ++ +STDG+ ++ G +
Sbjct: 257 GA--YNVLESFD--------LEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 331 WERDQGNYI 339
++ +
Sbjct: 306 YDAETLEKK 314
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 9/127 (7%), Positives = 31/127 (24%), Gaps = 5/127 (3%)
Query: 137 GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196
D + ++ A + + R +
Sbjct: 209 IDPADPTAYRTGLLTMDLETGEMAMREVRI---MDVFYFSTAVNPAKTRAFGAYNVLESF 265
Query: 197 QVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDD 254
+ ++ V + ++ +S+DGS ++ + V
Sbjct: 266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASM 325
Query: 255 AINAIVV 261
++ ++ +
Sbjct: 326 SLASVRL 332
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 32/313 (10%), Positives = 77/313 (24%), Gaps = 22/313 (7%)
Query: 86 KLLYGGSSNGEIRAWNRDPNNYVN-ITSTDVG----------DHANVVATGNGDAVKSLV 134
+ + ++ + + IT D G AT N +
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 135 VLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN 194
L D ++ + A S GK + + F
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVA 118
Query: 195 YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDD 254
+ ++ LA + DGS LY D + +++ +
Sbjct: 119 LYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAE 178
Query: 255 AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST 314
V + +G T +K + + T++ + +
Sbjct: 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI 238
Query: 315 DGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--L 371
+S A + D + ++ + + + V ++
Sbjct: 239 MDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV-----PLPHSYYSVNVSTDGST 293
Query: 372 LFSGSSDNTIRIW 384
++ G + + +
Sbjct: 294 VWLGGALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.5 bits (85), Expect = 0.003
Identities = 28/276 (10%), Positives = 62/276 (22%), Gaps = 36/276 (13%)
Query: 208 HHVDTVSALALSSDGSLLY-STSWDRTFKIWRTSDFRCLESVK----NAHDDAINAIVVS 262
T ++ G + Y + + + L + ++ +S
Sbjct: 31 DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALS 90
Query: 263 KSNDGFVYTGSADTKIKVWKKLRAALQV--NKKHSLVQTLEKHKSAVTALALSTDGTVLY 320
S +++ + + + + +T LA + DG+ LY
Sbjct: 91 PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150
Query: 321 SGACDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV---------VSN 370
D ++ E ++ L + + +
Sbjct: 151 GLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDID 210
Query: 371 LLFSGSSDNTIRIWR------RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNR 424
+ + V Y AV R + D
Sbjct: 211 PADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN 270
Query: 425 NS------DHSSTSF-------LVYSGSLDCEIKIW 447
S HS S V+ G ++ +
Sbjct: 271 ASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (93), Expect = 4e-04
Identities = 20/194 (10%), Positives = 49/194 (25%), Gaps = 8/194 (4%)
Query: 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE----SVKNAHDDAINAIVVSKSNDGF 268
V LS+ G L+ D + + + + + +
Sbjct: 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123
Query: 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGACD 325
+ + + + + + E+ + V A+ S +
Sbjct: 124 IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE 183
Query: 326 R-SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIW 384
IL+ + N + + + + G L G + + A N L + +
Sbjct: 184 TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA 243
Query: 385 RRSSSVTDHQKGYS 398
+ G
Sbjct: 244 IEDTGGQTPHPGRG 257
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 37.6 bits (86), Expect = 0.003
Identities = 24/240 (10%), Positives = 50/240 (20%), Gaps = 13/240 (5%)
Query: 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE--SVKNAHDDAINAIVVSKSNDG- 267
V +S+ G L D + + +K + K +
Sbjct: 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121
Query: 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327
+ G+ + Q + V + V A
Sbjct: 122 YTIAGAYWPPQFAIMD-------GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH 174
Query: 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387
+ V + L G + S+ + ++ N
Sbjct: 175 PEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVI 234
Query: 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447
S S L + P + V ++ H + G+ +
Sbjct: 235 DSKDRR---LSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY 291
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 37.1 bits (84), Expect = 0.003
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 269 VYTGSADTK-IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY-SGACDR 326
VY S +++ I VW L +L Q ++ V + +S D LY +
Sbjct: 6 VYIASPESQQIHVWN-----LNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEF 59
Query: 327 SILVWERDQGNYI 339
+L + +
Sbjct: 60 RVLAYRIAPDDGA 72
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 450 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.98 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.91 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.82 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.8 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.78 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.72 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.65 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.63 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.51 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.45 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.31 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.29 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.26 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.25 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.03 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.93 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.92 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.89 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.89 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.89 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.88 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.88 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.78 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.78 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.76 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.63 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.59 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.31 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.15 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.02 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.84 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.77 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.7 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.61 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.52 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.42 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.26 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.16 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.12 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.06 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.72 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.53 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.43 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.25 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.23 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.22 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.9 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.86 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.1 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.85 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.22 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.18 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.45 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.22 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 92.93 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.77 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 89.99 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.61 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 89.16 | |
| d1a12a_ | 401 | Regulator of chromosome condensation RCC1 {Human ( | 86.75 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 84.01 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.29 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 81.98 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-43 Score=314.69 Aligned_cols=291 Identities=18% Similarity=0.318 Sum_probs=242.0
Q ss_pred CccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 60 ASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 60 ~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
+...+.++++ +|...|+|++| +|++||||+ ||.|+|||+........ .......+|.+.|.+++|++
T Consensus 39 p~~~~~~~~~---~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~-------~~~~~~~~h~~~I~~v~~s~ 107 (337)
T d1gxra_ 39 PRHARQINTL---NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP-------VSQLDCLNRDNYIRSCKLLP 107 (337)
T ss_dssp CSEEEEEEEE---CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC-------SEEEECSCTTSBEEEEEECT
T ss_pred CCCceEEEEC---CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccce-------eEEeeecCCCCcEEEEEEcC
Confidence 3455666666 69999999999 799999997 79999999987653221 11123457999999999998
Q ss_pred Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 138 DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 138 ~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
+. |++|+.||+|++||+..... .....+..|...+.+
T Consensus 108 dg~~l~s~~~dg~i~iwd~~~~~~-----------------------------------------~~~~~~~~~~~~v~~ 146 (337)
T d1gxra_ 108 DGCTLIVGGEASTLSIWDLAAPTP-----------------------------------------RIKAELTSSAPACYA 146 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC-------------------------------------------EEEEEEECSSSCEEE
T ss_pred CCCEEEEeeccccccccccccccc-----------------------------------------ccccccccccccccc
Confidence 76 99999999999999986532 111233468889999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
++|+|++.++++++.|+.|++||+.+++...... .|...+.+++|++. ...+++++.|+.+++||+++++
T Consensus 147 ~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~-~~~~~v~~l~~s~~-~~~~~~~~~d~~v~i~d~~~~~-------- 216 (337)
T d1gxra_ 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGR-------- 216 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE--------
T ss_pred cccccccccccccccccccccccccccccccccc-cccccccccccccc-ccccccccccccccccccccce--------
Confidence 9999999999999999999999999999888776 78999999999984 4489999999999999997765
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLF 373 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 373 (450)
.+..+ .+...|.+++|+|++++|++|+.|+.|++||+++++.. ....|...|++++|++ ++|+
T Consensus 217 ~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------------~~~~~~~~i~~v~~s~~g~~l~ 281 (337)
T d1gxra_ 217 QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--------------QLHLHESCVLSLKFAYCGKWFV 281 (337)
T ss_dssp EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--------------EECCCSSCEEEEEECTTSSEEE
T ss_pred eeccc-ccccceEEEEEcccccccceeccccccccccccccccc--------------cccccccccceEEECCCCCEEE
Confidence 33333 47789999999999999999999999999999977543 3467889999999985 4999
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++.||.|++||+.++ +.+..+ .|...|.+++|+|+++ +|++|+.||+|+||||
T Consensus 282 s~s~Dg~i~iwd~~~~--------~~~~~~-~~~~~v~~~~~s~d~~-------------~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 282 STGKDNLLNAWRTPYG--------ASIFQS-KESSSVLSCDISVDDK-------------YIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSEEEEEETTTC--------CEEEEE-ECSSCEEEEEECTTSC-------------EEEEEETTSCEEEEEE
T ss_pred EEeCCCeEEEEECCCC--------CEEEEc-cCCCCEEEEEEeCCCC-------------EEEEEeCCCeEEEEEE
Confidence 9999999999999875 445544 4788999999999999 9999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-42 Score=306.11 Aligned_cols=284 Identities=22% Similarity=0.444 Sum_probs=248.7
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
...++|+ ||.++|++|+| ++++||||+.||+|+|||+.+++.... +.+|...|.+++|+++.
T Consensus 8 ~~~~~L~--GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~------------~~~h~~~V~~~~~~~~~~~ 73 (317)
T d1vyhc1 8 PEKYALS--GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT------------LKGHTDSVQDISFDHSGKL 73 (317)
T ss_dssp SCSCEEE--CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE------------ECCCSSCEEEEEECTTSSE
T ss_pred CccEEEc--CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEE------------EeCCCCcEEEEeeeccccc
Confidence 3456788 99999999999 799999999999999999999887665 67899999999999877
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.++.+.+|+...... ...+..|...+.++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~ 110 (317)
T d1vyhc1 74 LASCSADMTIKLWDFQGFEC-------------------------------------------IRTMHGHDHNVSSVSIM 110 (317)
T ss_dssp EEEEETTSCCCEEETTSSCE-------------------------------------------EECCCCCSSCEEEEEEC
T ss_pred cccccccccccccccccccc-------------------------------------------ccccccccccceeeecc
Confidence 88999999999999887622 11223578899999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
++++.+++++.|+.+++||+++++.+..+. .|...+.+++++++ ..++++++.|+.|++|++.+.+ ....
T Consensus 111 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~d~~v~~~~~~~~~--------~~~~ 180 (317)
T d1vyhc1 111 PNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKE--------CKAE 180 (317)
T ss_dssp SSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC--------EEEE
T ss_pred CCCceEEeeccCcceeEeecccceeeeEEc-cCCCcceeeecccC-CCEEEEEeCCCeEEEEeeccce--------eeEE
Confidence 999999999999999999999999988887 88899999999984 4589999999999999997765 4556
Q ss_pred HhhcccceEEEEEcCC--------------------CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 300 LEKHKSAVTALALSTD--------------------GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~--------------------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+..+...+.+++|+|+ +.++++++.|+.|++||+++++.+ ..+.+|.
T Consensus 181 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~-------------~~~~~~~ 247 (317)
T d1vyhc1 181 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-------------MTLVGHD 247 (317)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE-------------EEEECCS
T ss_pred EecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE-------------EEEeCCC
Confidence 6677788888888765 457999999999999999988755 5677899
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
..|.++++++ ++|++|+.||.|++||+.++ +++..+.+|..+|++++|+|+++ +|+|
T Consensus 248 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~h~~~V~~~~~s~~~~-------------~l~s 306 (317)
T d1vyhc1 248 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--------RCMKTLNAHEHFVTSLDFHKTAP-------------YVVT 306 (317)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTS--------CCCEEEECCSSCEEEEEECSSSS-------------CEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCeEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCC-------------EEEE
Confidence 9999999984 49999999999999999874 67788999999999999999999 8999
Q ss_pred cccCCcEEEEE
Q 041325 438 GSLDCEIKIWQ 448 (450)
Q Consensus 438 ~~~Dg~i~iw~ 448 (450)
|+.||+|+|||
T Consensus 307 ~s~Dg~i~iWd 317 (317)
T d1vyhc1 307 GSVDQTVKVWE 317 (317)
T ss_dssp EETTSEEEEEC
T ss_pred EeCCCeEEEeC
Confidence 99999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-41 Score=308.68 Aligned_cols=315 Identities=24% Similarity=0.400 Sum_probs=240.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCC------cceeEEecCCCceEEEEEeCCe--EEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGD------HANVVATGNGDAVKSLVVLGDK--LFS 142 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~--l~s 142 (450)
+|.+.|+||+| ||++||+|+ ||.|+|||+.+++........... ........|...|.+++|++++ |++
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s 138 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 138 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee
Confidence 79999999999 799999987 899999999998876654332211 1222345788899999999876 999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
|+.||.|++||...++. ...+.+|...|.++++++++
T Consensus 139 ~~~dg~v~i~~~~~~~~-------------------------------------------~~~~~~h~~~v~~~~~~~~~ 175 (388)
T d1erja_ 139 GAEDRLIRIWDIENRKI-------------------------------------------VMILQGHEQDIYSLDYFPSG 175 (388)
T ss_dssp EETTSCEEEEETTTTEE-------------------------------------------EEEECCCSSCEEEEEECTTS
T ss_pred ccccccccccccccccc-------------------------------------------cccccccccccccccccccc
Confidence 99999999999988732 12233688999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
..+++++.++.+++||..+........ +.....++.+.+.+..+|++++.||.|++||.+++..... .........+
T Consensus 176 ~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~ 252 (388)
T d1erja_ 176 DKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER-LDSENESGTG 252 (388)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE-EC------CC
T ss_pred ccccccccceeeeeeeccccccccccc--cccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee-eccccccccC
Confidence 999999999999999999988877765 5556677778876777899999999999999987652111 1112334456
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCe
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNT 380 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~ 380 (450)
|...|.+++|+|++++|++|+.||.|++||+.+++......... ..........|...|++++|++ ++|++|+.||.
T Consensus 253 h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~ 331 (388)
T d1erja_ 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN-SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331 (388)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccc-ccceeeecccccceEEEEEECCCCCEEEEEeCCCE
Confidence 88999999999999999999999999999998776543222211 1123345567889999999984 59999999999
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++||++++ +++..+.+|.+.|+++++++... +++++.+|+||+.||+|+||++|
T Consensus 332 i~vwd~~~~--------~~~~~l~~H~~~V~~~~~~~~~~-------~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 332 VLFWDKKSG--------NPLLMLQGHRNSVISVAVANGSS-------LGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEETTTC--------CEEEEEECCSSCEEEEEECSSCT-------TCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEECCCC--------cEEEEEeCCCCCEEEEEEecCcc-------cCCCCCEEEEEeCCCEEEEEeee
Confidence 999999875 78889999999999999876543 55666699999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6e-41 Score=293.98 Aligned_cols=288 Identities=16% Similarity=0.145 Sum_probs=236.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
.+.+.+.++++ +|+.|+.++ ++.|.+|++++...... +.+|...|++++|+|++ |++|+.||+
T Consensus 15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~------------~~~H~~~v~~~~~sp~g~~latg~~dg~ 81 (311)
T d1nr0a1 15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEI------------YTEHSHQTTVAKTSPSGYYCASGDVHGN 81 (311)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEE------------ECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEE------------EcCCCCCEEEEEEeCCCCeEeccccCce
Confidence 34455556666 789999886 56799999998876665 77999999999999877 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+...... ....+..|.+.|.+++|+|++++++++
T Consensus 82 i~iwd~~~~~~~-----------------------------------------~~~~~~~~~~~v~~v~~s~d~~~l~~~ 120 (311)
T d1nr0a1 82 VRIWDTTQTTHI-----------------------------------------LKTTIPVFSGPVKDISWDSESKRIAAV 120 (311)
T ss_dssp EEEEESSSTTCC-----------------------------------------EEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred Eeeeeeeccccc-----------------------------------------cccccccccCccccccccccccccccc
Confidence 999999887321 112244688999999999999999998
Q ss_pred eC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 229 SW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 229 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+. +..+++|++++++....+. .|...|.+++|+|+++..+++|+.||.|++||+++.+ ....+..|...
T Consensus 121 ~~~~~~~~~v~~~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~--------~~~~~~~~~~~ 191 (311)
T d1nr0a1 121 GEGRERFGHVFLFDTGTSNGNLT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--------FKSTFGEHTKF 191 (311)
T ss_dssp ECCSSCSEEEEETTTCCBCBCCC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--------EEEEECCCSSC
T ss_pred ccccccccccccccccccccccc-ccccccccccccccceeeecccccccccccccccccc--------ccccccccccc
Confidence 85 4569999999998888887 8899999999999777678999999999999997765 56666778999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIW 384 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iw 384 (450)
|++++|+|++++|++++.|+.|++||..+++....+... .....+|...|++++|++ ++|++|+.||.|+||
T Consensus 192 i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~------~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iw 265 (311)
T d1nr0a1 192 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD------SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW 265 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT------TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ccccccCcccccccccccccccccccccccccccccccc------ccccccccccccccccCCCCCEEEEEeCCCeEEEE
Confidence 999999999999999999999999999988766433222 124567999999999984 599999999999999
Q ss_pred eCCCCccccCCCceeEEEecCCCc-ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 385 RRSSSVTDHQKGYSCLAVLEGHRR-PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 385 d~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++++ +++..+..|.. ....+.+.+++. .|++++.||.|++||++
T Consensus 266 d~~t~--------~~~~~l~~~~~~~~~~~~~~~~~~-------------~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 266 NVATL--------KVEKTIPVGTRIEDQQLGIIWTKQ-------------ALVSISANGFINFVNPE 311 (311)
T ss_dssp ETTTT--------EEEEEEECCSSGGGCEEEEEECSS-------------CEEEEETTCCEEEEETT
T ss_pred ECCCC--------cEEEEEECCCCccceEEEEEecCC-------------EEEEEECCCEEEEEeCC
Confidence 99875 67777766643 334455566666 79999999999999974
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.6e-40 Score=292.74 Aligned_cols=290 Identities=19% Similarity=0.314 Sum_probs=242.0
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+..++|+ ||.+.|++++| ++++||||+.||+|+|||+.+++.... +..|...|.+++|+++.
T Consensus 45 ~~~~~tL~--GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~------------~~~~~~~v~~v~~~~~~~ 110 (340)
T d1tbga_ 45 MRTRRTLR--GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA------------IPLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE------------EECSCSCEEEEEECTTSS
T ss_pred eeeeEEEC--CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEE------------EecccccEEeeEeeccce
Confidence 46778888 99999999999 799999999999999999999887665 67899999999999876
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++|+.|+.+++|+........ .....+.+|.........
T Consensus 111 ~l~~~~~d~~i~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~ 151 (340)
T d1tbga_ 111 YVACGGLDNICSIYNLKTREGNV---------------------------------------RVSRELAGHTGYLSCCRF 151 (340)
T ss_dssp EEEEEETTCCEEEEESSSSCSCC---------------------------------------CEEEEECCCSSCEEEEEE
T ss_pred eeeeecccceeeccccccccccc---------------------------------------ccceeccccccccccccc
Confidence 9999999999999987662100 011123345555555544
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
. .+..+.....+.....++........... .+...+....+.+ ...++++++.|+.|++||+++++ .+.
T Consensus 152 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~d~~v~i~d~~~~~--------~~~ 220 (340)
T d1tbga_ 152 L-DDNQIVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM--------CRQ 220 (340)
T ss_dssp E-ETTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTTE--------EEE
T ss_pred c-ccccccccccccccccccccccccccccc-ccceeEeeecccc-ccceeEEeecCceEEEEECCCCc--------EEE
Confidence 4 45567778889999999998877766666 6777888888887 45589999999999999997766 666
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEe
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS 376 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~ 376 (450)
.+.+|...|++++|+|++++|++|+.||.|++||++..+.+ .......+...|.+++|++ ++|++|+
T Consensus 221 ~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~-----------~~~~~~~~~~~i~~~~~s~~~~~l~~g~ 289 (340)
T d1tbga_ 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL-----------MTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----------EEECCTTCCSCEEEEEECSSSCEEEEEE
T ss_pred EEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc-----------cccccccccCceEEEEECCCCCEEEEEE
Confidence 77889999999999999999999999999999999987654 2234456778899999985 4999999
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.||.|++||+.++ +++..+.+|..+|++++|+|++. +|+|||.||.|+|||
T Consensus 290 ~dg~i~iwd~~~~--------~~~~~~~~H~~~V~~l~~s~d~~-------------~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 290 DDFNCNVWDALKA--------DRAGVLAGHDNRVSCLGVTDDGM-------------AVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-------------CEEEEETTSCEEEEC
T ss_pred CCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEeCCCC-------------EEEEEccCCEEEEeC
Confidence 9999999999874 78889999999999999999999 899999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-39 Score=286.77 Aligned_cols=323 Identities=19% Similarity=0.341 Sum_probs=242.3
Q ss_pred cceeeeEEeecCCCcce-EEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeE
Q 041325 62 EHQCSATLKVKGNSSYI-PSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKL 140 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v-~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l 140 (450)
+.++.++|+ ||.+.| +|++++|++||||+.||+|+|||+.+++++.. +.+|.+.|.+++|+++.|
T Consensus 5 ~~~~~~~l~--GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~------------~~~h~~~V~~v~~~~~~l 70 (342)
T d2ovrb2 5 ELKSPKVLK--GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT------------LVGHTGGVWSSQMRDNII 70 (342)
T ss_dssp CCCCCEEEE--CSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE------------CCCCSSCEEEEEEETTEE
T ss_pred CCCcCEEEC--CcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEE------------EeCCCCCEEEEEeCCCcc
Confidence 456778888 999987 57888999999999999999999999987765 678999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee--eeecCCCceEEEEE
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC--TWVHHVDTVSALAL 218 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~ 218 (450)
++++.|+++++|+................. ..... ..........+..+.+...... ..............
T Consensus 71 ~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~ 143 (342)
T d2ovrb2 71 ISGSTDRTLKVWNAETGECIHTLYGHTSTV------RCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV 143 (342)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCE------EEEEE-ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEE
T ss_pred ccceecccccccccccccceecccccceeE------eeeec-ccccccccccceeEEEeecccccceeeeecccccceee
Confidence 999999999999998875543332222110 00000 0111122222333333222111 11111112223344
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
......+++++.|+.|++||....+.+..+. .|...+..+.+. ...+++++.||.|++||++.++ .+.
T Consensus 144 ~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~---~~~l~s~~~dg~i~~~d~~~~~--------~~~ 211 (342)
T d2ovrb2 144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFD---GIHVVSGSLDTSIRVWDVETGN--------CIH 211 (342)
T ss_dssp EECSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEEC---SSEEEEEETTSCEEEEETTTCC--------EEE
T ss_pred ccccceeeeecCCCeEEEeecccceeeEEEc-CcccccccccCC---CCEEEEEeCCCeEEEeecccce--------eee
Confidence 5567789999999999999999999888887 676666665553 4589999999999999997765 566
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCC
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSD 378 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 378 (450)
.+..|...+.+++++ +++|++|+.||.|++||+...+... .......|...+.++.++++++++|+.|
T Consensus 212 ~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s~s~D 279 (342)
T d2ovrb2 212 TLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQ----------TLQGPNKHQSAVTCLQFNKNFVITSSDD 279 (342)
T ss_dssp EECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE----------EECSTTSCSSCEEEEEECSSEEEEEETT
T ss_pred EecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccc----------cccccceeeeceeecccCCCeeEEEcCC
Confidence 777888889888775 5699999999999999998876542 2234456788899999999999999999
Q ss_pred CeEEEeeCCCCccccCCCceeEEEe-----cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc----EEEEEe
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVL-----EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE----IKIWQI 449 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~----i~iw~l 449 (450)
|.|++||++++ +++..+ .+|...|++++|+|++. +|++|+.||+ |++||+
T Consensus 280 g~i~iwd~~tg--------~~i~~~~~~~~~~~~~~v~~v~~s~~~~-------------~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 280 GTVKLWDLKTG--------EFIRNLVTLESGGSGGVVWRIRASNTKL-------------VCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp SEEEEEETTTC--------CEEEEEEECTTGGGTCEEEEEEECSSEE-------------EEEEECSSSSSCCEEEEEEC
T ss_pred CEEEEEECCCC--------CEEEEEecccCCCCCCCEEEEEECCCCC-------------EEEEEeCCCCCeeEEEEEeC
Confidence 99999999975 444444 46788999999999988 9999999986 999997
Q ss_pred C
Q 041325 450 R 450 (450)
Q Consensus 450 ~ 450 (450)
.
T Consensus 339 ~ 339 (342)
T d2ovrb2 339 D 339 (342)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-39 Score=284.35 Aligned_cols=290 Identities=19% Similarity=0.306 Sum_probs=225.4
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
++..+++. ||.+.|++++| |+++|+||+.||+|++||+++++..... ..+|...|.+++|++++
T Consensus 2 g~~~~~~~--GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-----------~~~h~~~v~~v~~~~~g~ 68 (299)
T d1nr0a2 2 GSIDQVRY--GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-----------PDVHATMITGIKTTSKGD 68 (299)
T ss_dssp TEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-----------SCSCSSCEEEEEECTTSC
T ss_pred CccceEcC--CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----------cCCCCCcEEEEEeeccce
Confidence 46788888 99999999999 7999999999999999999988766541 23788999999999887
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.|+.+++|+....... ........+...+.+++++
T Consensus 69 ~~~~~~d~~v~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~s 108 (299)
T d1nr0a2 69 LFTVSWDDHLKVVPAGGSGVD----------------------------------------SSKAVANKLSSQPLGLAVS 108 (299)
T ss_dssp EEEEETTTEEEEECSSSSSSC----------------------------------------TTSCCEEECSSCEEEEEEC
T ss_pred eecccceeeEEEeccCCcccc----------------------------------------ccccccccccccccccccc
Confidence 899999999999998754210 0011122466788999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
++++++++++ ++.+++|+... ... .. ....+.+++++|+ ..++++++.||.|++||+++++.. ...
T Consensus 109 ~~g~~~~~~~-~~~i~~~~~~~--~~~-~~--~~~~~~~~~~s~~-~~~l~~g~~dg~i~~~d~~~~~~~-------~~~ 174 (299)
T d1nr0a2 109 ADGDIAVAAC-YKHIAIYSHGK--LTE-VP--ISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASVS-------EVK 174 (299)
T ss_dssp TTSSCEEEEE-SSEEEEEETTE--EEE-EE--CSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEEE-------EEE
T ss_pred cccccccccc-ccccccccccc--ccc-cc--ccccccccccccc-cccccccccccccccccccccccc-------ccc
Confidence 9999877766 67899999643 222 22 3456788999984 458999999999999998765411 112
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~ 377 (450)
...|...|++++|+|++++|++++.|+.|++||+.++.... ....+.+|...|++++|++ ++|++|+.
T Consensus 175 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~----------~~~~~~~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 175 TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA----------HTNSWTFHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES----------CCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccccccccccccccccccc----------ccccccccccccccccccccccceEEEcC
Confidence 23578899999999999999999999999999998776441 2345678999999999985 49999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
||.|++||++++. .........| ...|.++.| +++. +|+||+.||+|++|||
T Consensus 245 dg~i~iwd~~~~~------~~~~~~~~~~~~~~v~~~~~-~~~~-------------~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 245 DNSVIVWNMNKPS------DHPIIIKGAHAMSSVNSVIW-LNET-------------TIVSAGQDSNIKFWNV 297 (299)
T ss_dssp TSCEEEEETTCTT------SCCEEETTSSTTSCEEEEEE-EETT-------------EEEEEETTSCEEEEEC
T ss_pred CCEEEEEECCCCC------cceEEEecCCCCCcEEEEEE-CCCC-------------EEEEEeCCCEEEEEec
Confidence 9999999998641 1233333444 455666654 5666 8999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-39 Score=291.15 Aligned_cols=303 Identities=13% Similarity=0.160 Sum_probs=228.2
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKI 149 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 149 (450)
+.++|+|++| ||++||+|+.||.|+|||+++++.... ..+.+|.++|.+|+|+|+. |++|+.|++|
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~----------~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i 75 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV----------HELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 75 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE----------EEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEE----------EEecCCCCCEEEEEECCCCCEEEEEECCCeE
Confidence 3578999999 899999999999999999987764333 2367999999999999776 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
++||+++.... ....+.+|...|.+++|+|+++.|++++
T Consensus 76 ~vWd~~~~~~~-----------------------------------------~~~~~~~~~~~v~~i~~~p~~~~l~~~s 114 (371)
T d1k8kc_ 76 YVWTLKGRTWK-----------------------------------------PTLVILRINRAARCVRWAPNEKKFAVGS 114 (371)
T ss_dssp EEEEEETTEEE-----------------------------------------EEEECCCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeecccccc-----------------------------------------cccccccccccccccccccccccceeec
Confidence 99999876321 1112335888999999999999999999
Q ss_pred CCCcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc----------cchh
Q 041325 230 WDRTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK----------KHSL 296 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------~~~~ 296 (450)
.|+.|++|++..... .......|...|.+++|+|+ ..+|++|+.|+.|++||.......... ....
T Consensus 115 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~-~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (371)
T d1k8kc_ 115 GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 193 (371)
T ss_dssp TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred ccCcceeeeeeccccccccccccccccccccccccccc-ccceeccccCcEEEEEeeccCccccccccccccccccceee
Confidence 999999999876543 23333468889999999984 458999999999999998764422110 1123
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSG 375 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~ 375 (450)
......|...|.+++|+|++++|++++.|+.|++||+.+++.+ ..+..|..+|.+++|+++ .++++
T Consensus 194 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~v~s~~fs~d~~~la~ 260 (371)
T d1k8kc_ 194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV-------------ATLASETLPLLAVTFITESSLVAA 260 (371)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE-------------EEEECSSCCEEEEEEEETTEEEEE
T ss_pred eeeccCccCcEEEEEeecccccccccccCCcceEEeeecccce-------------eeeecccccceeeeecCCCCEEEE
Confidence 3445568889999999999999999999999999999987755 566788999999999854 44555
Q ss_pred eCCCeEEEeeCCCCccc--c------CC-------------------------CceeEEEecCCCcceEEEEEEecCCCC
Q 041325 376 SSDNTIRIWRRSSSVTD--H------QK-------------------------GYSCLAVLEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~--~------~~-------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~ 422 (450)
+.|+.+++|........ . .. ..........|.+.|+++++.+.+..
T Consensus 261 g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~- 339 (371)
T d1k8kc_ 261 GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKA- 339 (371)
T ss_dssp ETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTT-
T ss_pred EcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCc-
Confidence 66887777654432100 0 00 00000011248899999999987641
Q ss_pred CCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
....++|+|.||.|+|||++
T Consensus 340 --------~~~~~~T~g~Dg~v~iW~~~ 359 (371)
T d1k8kc_ 340 --------KCSQFCTTGMDGGMSIWDVR 359 (371)
T ss_dssp --------SCSEEEEEETTSEEEEEEHH
T ss_pred --------ceEEEEEEcCCCeEEEEeCC
Confidence 11168999999999999974
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-38 Score=284.99 Aligned_cols=282 Identities=19% Similarity=0.350 Sum_probs=218.7
Q ss_pred eeEEeecCCCcc-eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE
Q 041325 66 SATLKVKGNSSY-IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA 143 (450)
Q Consensus 66 ~~~l~~~~h~~~-v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~ 143 (450)
..+|+ ||... |+|+++|+++||||+.||+|+|||+.+++++.. +.+|.++|.+++|+++. |++|
T Consensus 5 ~~tL~--GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~------------l~~H~~~V~~l~~s~~~~l~s~ 70 (355)
T d1nexb2 5 RTTLR--GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ------------LSGHDGGVWALKYAHGGILVSG 70 (355)
T ss_dssp EEEEE--CCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEE------------EECCSSCEEEEEEETTTEEEEE
T ss_pred cEEEC--CcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEE------------EECCCCCEEEEEEcCCCEEEEE
Confidence 45677 99887 589999999999999999999999999887666 78999999999999766 9999
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
+.||+|++|++....... .... ..+........+.+++.
T Consensus 71 s~D~~i~iw~~~~~~~~~----------------~~~~-------------------------~~~~~~~~~~~~~~~~~ 109 (355)
T d1nexb2 71 STDRTVRVWDIKKGCCTH----------------VFEG-------------------------HNSTVRCLDIVEYKNIK 109 (355)
T ss_dssp ETTCCEEEEETTTTEEEE----------------EECC-------------------------CSSCEEEEEEEEETTEE
T ss_pred eccccccccccccccccc----------------cccc-------------------------ccccccccccccccccc
Confidence 999999999999874321 1110 11333456677888999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEee----------------------cccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVK----------------------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~----------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
++++++.|+.|++||+.+........ ..|...+.... + ...+++++..|+.|++|
T Consensus 110 ~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-~~~~~~~~~~d~~i~~~ 186 (355)
T d1nexb2 110 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-HGNIVVSGSYDNTLIVW 186 (355)
T ss_dssp EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEE--E-ETTEEEEEETTSCEEEE
T ss_pred eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccc--c-ccceeeeecccceeeee
Confidence 99999999999999998765443221 11222333332 2 34589999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|+++++ .+.....+...+.++.++|+++++++++.|+.|++||++++..+ ..+.+|...
T Consensus 187 d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-------------~~~~~h~~~ 245 (355)
T d1nexb2 187 DVAQMK--------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM-------------YTLQGHTAL 245 (355)
T ss_dssp ETTTTE--------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEE-------------EEECCCSSC
T ss_pred eccccc--------ceeeeeccccccccccccccceeeecccccceEEeeeccccccc-------------ccccccccc
Confidence 997765 45556677888999999999999999999999999999988755 567789999
Q ss_pred eEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE-EecCCCCCCCCCCCCceEEEEEccc
Q 041325 362 ILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA-VVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
|.++++++++|++|+.||.|++||+++. ...+..|...+.++.+ ++++. ++++ +.
T Consensus 246 v~~~~~~~~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~-------------~l~~-g~ 301 (355)
T d1nexb2 246 VGLLRLSDKFLVSAAADGSIRGWDANDY----------SRKFSYHHTNLSAITTFYVSDN-------------ILVS-GS 301 (355)
T ss_dssp CCEEEECSSEEEEECTTSEEEEEETTTC----------CEEEEEECTTCCCCCEEEECSS-------------EEEE-EE
T ss_pred ccccccccceeeeeeccccccccccccc----------ceecccccCCceEEEEEcCCCC-------------EEEE-Ee
Confidence 9999999999999999999999999863 2334456666776654 55555 5555 56
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
||.|+|||++
T Consensus 302 d~~i~vwd~~ 311 (355)
T d1nexb2 302 ENQFNIYNLR 311 (355)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEEECC
Confidence 9999999975
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.9e-38 Score=275.98 Aligned_cols=259 Identities=14% Similarity=0.173 Sum_probs=209.8
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
+.....+..+.+. +|...|++++| ||++||+|+.||+|+|||+.++..... ..+.+|.++|.+++|
T Consensus 43 ~~~~~~~~~~~~~--~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~v~~v~~ 110 (311)
T d1nr0a1 43 VPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK----------TTIPVFSGPVKDISW 110 (311)
T ss_dssp EETTCSSCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE----------EEEECSSSCEEEEEE
T ss_pred EECCCCceeEEEc--CCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc----------cccccccCccccccc
Confidence 3344556777787 99999999999 899999999999999999988764322 136689999999999
Q ss_pred eCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 136 LGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 136 ~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+++. +++++. ++.+++|++++++. ...+.+|.+
T Consensus 111 s~d~~~l~~~~~~~~~~~~v~~~~~~~~-------------------------------------------~~~l~~h~~ 147 (311)
T d1nr0a1 111 DSESKRIAAVGEGRERFGHVFLFDTGTS-------------------------------------------NGNLTGQAR 147 (311)
T ss_dssp CTTSCEEEEEECCSSCSEEEEETTTCCB-------------------------------------------CBCCCCCSS
T ss_pred cccccccccccccccccccccccccccc-------------------------------------------ccccccccc
Confidence 9876 777765 56699999988731 122346889
Q ss_pred ceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.|++++|+|++++ +++|+.|+.|++||+++++....+. .|...|.++.++|+ ..++++++.|+.|++||..++....
T Consensus 148 ~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~-~~~~~i~~v~~~p~-~~~l~~~~~d~~v~~~d~~~~~~~~ 225 (311)
T d1nr0a1 148 AMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTG 225 (311)
T ss_dssp CEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ccccccccccceeeecccccccccccccccccccccccc-cccccccccccCcc-ccccccccccccccccccccccccc
Confidence 9999999998875 8889999999999999999888887 78999999999994 4589999999999999987754211
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC---ccceEEEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH---TKAILCLAV 367 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~ 367 (450)
... .......+|...|++++|+|++++|++|+.||.|+|||+++++++ ..+..| ...+.++.|
T Consensus 226 ~~~-~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~-------------~~l~~~~~~~~~~~~~~~ 291 (311)
T d1nr0a1 226 VFE-DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE-------------KTIPVGTRIEDQQLGIIW 291 (311)
T ss_dssp ECB-CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE-------------EEEECCSSGGGCEEEEEE
T ss_pred ccc-ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEEECCCCccceEEEEEe
Confidence 111 122234568899999999999999999999999999999998765 233322 345678889
Q ss_pred eCCeEEEEeCCCeEEEeeCC
Q 041325 368 VSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 368 ~~~~l~s~~~dg~v~iwd~~ 387 (450)
+++.|++++.||.|++||.+
T Consensus 292 ~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 292 TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp CSSCEEEEETTCCEEEEETT
T ss_pred cCCEEEEEECCCEEEEEeCC
Confidence 99999999999999999964
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.7e-38 Score=271.02 Aligned_cols=270 Identities=20% Similarity=0.244 Sum_probs=216.1
Q ss_pred ceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EE
Q 041325 63 HQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LF 141 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~ 141 (450)
.+++++|+ ||..+|++++|+. |+||+.||+|++||+.++ ..+|...|.++++.++. ++
T Consensus 3 ~~~i~~l~--gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~-----------------~~~h~~~V~~~~~~~~~~~~ 61 (287)
T d1pgua2 3 DEVLKTIS--GHNKGITALTVNP--LISGSYDGRIMEWSSSSM-----------------HQDHSNLIVSLDNSKAQEYS 61 (287)
T ss_dssp EEEEEEEC--CCSSCEEEEETTT--TEEEETTSCEEETTTTEE-----------------ECCCCSCEEEEECCSTTCCE
T ss_pred cceeEEEC--CCCCceEEEEECc--EEEEeCCCeEEEEECCCC-----------------CCCCCCCEEEEEecCCCeEE
Confidence 57889998 9999999999975 999999999999998653 24799999999999766 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.|++|++|++... .....+.+++++++
T Consensus 62 s~s~D~~v~~w~~~~~--------------------------------------------------~~~~~~~~~~~~~~ 91 (287)
T d1pgua2 62 SISWDDTLKVNGITKH--------------------------------------------------EFGSQPKVASANND 91 (287)
T ss_dssp EEETTTEEEETTEEEE--------------------------------------------------ECSSCEEEEEECSS
T ss_pred EEeecccccccccccc--------------------------------------------------ccccceeeeeeccC
Confidence 9999999999998654 12335677888888
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhccccchhhhhH
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
+..++++ .++.+.+|+..+++.+..+. ....+. ++++.+. .+++++. ++.+++|++...+. .....
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~-~~~v~~~~~~~v~~~~~~~~~~-------~~~~~ 158 (287)
T d1pgua2 92 GFTAVLT-NDDDLLILQSFTGDIIKSVR--LNSPGS--AVSLSQN-YVAVGLEEGNTIQVFKLSDLEV-------SFDLK 158 (287)
T ss_dssp SEEEEEE-TTSEEEEEETTTCCEEEEEE--CSSCEE--EEEECSS-EEEEEETTTSCEEEEETTEEEE-------EEECS
T ss_pred CceEEEe-ecccceeeeccceeeeeecc--ccceee--eeeccCc-ceeeeccccceeeeeeccccce-------eeeee
Confidence 8766655 56778999999998888776 334444 4455455 5555554 56799999865441 11122
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-----------
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS----------- 369 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------- 369 (450)
..+...+++++|+|++++|++|+.||.|++||+.+++.. ...+.+|...|.+++|++
T Consensus 159 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~------------~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK------------TSRWAFRTSKINAISWKPAEKGANEEEIE 226 (287)
T ss_dssp SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE------------ECCSCCCSSCEEEEEECCCC------CCS
T ss_pred eccCCceeEEEeccCccccccccccccccceeecccccc------------cccccccccccceeeecccccccccccCC
Confidence 346778999999999999999999999999999987643 245678999999999863
Q ss_pred -CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 370 -NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 370 -~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+++++|+.|+.|++||++.+ .+.+..+.+|...|++++|++++ .|+|+|.||.|++|+
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~-------~~~~~~~~~h~~~V~~v~~~~~~--------------~l~s~g~D~~v~iW~ 285 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRP-------MKIIKALNAHKDGVNNLLWETPS--------------TLVSSGADACIKRWN 285 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCT-------TCCEEETTSSTTCEEEEEEEETT--------------EEEEEETTSCEEEEE
T ss_pred CCeeEeecCCCeEEEEECCCC-------CeEEEEeCCCCCCeEEEEECCCC--------------EEEEEECCCeEEEEE
Confidence 38999999999999998763 35677888999999999999975 588999999999999
Q ss_pred e
Q 041325 449 I 449 (450)
Q Consensus 449 l 449 (450)
+
T Consensus 286 i 286 (287)
T d1pgua2 286 V 286 (287)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.2e-37 Score=266.60 Aligned_cols=278 Identities=24% Similarity=0.436 Sum_probs=223.9
Q ss_pred CCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEE
Q 041325 73 GNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVW 152 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw 152 (450)
+|...|+|++||+++||||+.||+|+|||+.+++++.. +.+|.+.|++++|.++.|++|+.||.|++|
T Consensus 13 ~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~------------l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~ 80 (293)
T d1p22a2 13 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI------------LTGHTGSVLCLQYDERVIITGSSDSTVRVW 80 (293)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE------------ECCCSSCEEEEECCSSEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEE------------EecCCCCEeeeecccceeeccccccccccc
Confidence 78899999999999999999999999999999887776 779999999999998889999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
++..+..... . .........+.+....++++..++
T Consensus 81 ~~~~~~~~~~----------------~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 115 (293)
T d1p22a2 81 DVNTGEMLNT----------------L-----------------------------IHHCEAVLHLRFNNGMMVTCSKDR 115 (293)
T ss_dssp ESSSCCEEEE----------------E-----------------------------CCCCSCEEEEECCTTEEEEEETTS
T ss_pred cccccccccc----------------c-----------------------------cccccccccccccccceeeccccc
Confidence 9998743111 1 111122334455667889999999
Q ss_pred cEEEEecCCCeEEEE--eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 233 TFKIWRTSDFRCLES--VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
.+.+||......... ....|...+..+.+. ...+++++.|+.|++||+++.+ .+..+.++...+..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~s~d~~i~~~d~~~~~--------~~~~~~~~~~~v~~~ 184 (293)
T d1p22a2 116 SIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCE--------FVRTLNGHKRGIACL 184 (293)
T ss_dssp CEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEE
T ss_pred ceeEeeccccccccccccccccccccccceec---ccccccccCCCceeeecCCCCc--------EEEEEcccccccccc
Confidence 999999987653222 222677788777775 3478889999999999997766 556667777888877
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCc
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
.++ +.++++++.||.|++||+++.+.+ ....+|...+.++..++.+|++|+.||.|++||+....
T Consensus 185 ~~~--~~~l~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~~~~~ 249 (293)
T d1p22a2 185 QYR--DRLVVSGSSDNTIRLWDIECGACL-------------RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 249 (293)
T ss_dssp EEE--TTEEEEEETTSCEEEEETTTCCEE-------------EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred cCC--CCeEEEecCCCEEEEEecccceee-------------eeecccceeeeeccccceEEEEEcCCCEEEEEECCCCc
Confidence 775 678999999999999999987755 45677888899888889999999999999999987543
Q ss_pred ccc-CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 391 TDH-QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 391 ~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
... .....++..+.+|.+.|++++| ++. +|+|||.||+|+|||
T Consensus 250 ~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~-------------~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 250 DPRAPAGTLCLRTLVEHSGRVFRLQF--DEF-------------QIVSSSHDDTILIWD 293 (293)
T ss_dssp STTSCTTTTEEEEECCCSSCCCCEEE--CSS-------------CEEECCSSSEEEEEC
T ss_pred cccccCCceeeEEecCCCCCEEEEEE--cCC-------------EEEEEecCCEEEEeC
Confidence 221 2334577889999999999998 455 799999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-36 Score=265.10 Aligned_cols=244 Identities=20% Similarity=0.326 Sum_probs=205.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
..+..+...+|.+.|++++| |+++|++|+.||.|++||+........ ..+..|...|.+++|+++.
T Consensus 86 ~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~ 155 (337)
T d1gxra_ 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK----------AELTSSAPACYALAISPDSKV 155 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE----------EEEECSSSCEEEEEECTTSSE
T ss_pred ceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccc----------ccccccccccccccccccccc
Confidence 34455555689999999999 899999999999999999876553322 2366899999999999876
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.|+.|++|++.+++. . .....|...|.+++|+
T Consensus 156 l~s~~~d~~i~~~~~~~~~~----------------~---------------------------~~~~~~~~~v~~l~~s 192 (337)
T d1gxra_ 156 CFSCCSDGNIAVWDLHNQTL----------------V---------------------------RQFQGHTDGASCIDIS 192 (337)
T ss_dssp EEEEETTSCEEEEETTTTEE----------------E---------------------------EEECCCSSCEEEEEEC
T ss_pred cccccccccccccccccccc----------------c---------------------------cccccccccccccccc
Confidence 89999999999999988732 1 1223588899999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+++..+++++.|+.|++||+++++.+..+. +...|.+++|+|. ..++++++.||.+++||++.++ . ..
T Consensus 193 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~-~~~l~~~~~d~~i~i~d~~~~~--------~-~~ 260 (337)
T d1gxra_ 193 NDGTKLWTGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPD--------K-YQ 260 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSC--------E-EE
T ss_pred ccccccccccccccccccccccceeecccc--cccceEEEEEccc-ccccceeccccccccccccccc--------c-cc
Confidence 999999999999999999999999888775 7889999999984 4589999999999999997765 2 23
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~ 377 (450)
...|...|++++|+|++++|++|+.||.|++||+.+++.+. ...|...|++++|++ ++|++|+.
T Consensus 261 ~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~--------------~~~~~~~v~~~~~s~d~~~l~t~s~ 326 (337)
T d1gxra_ 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--------------QSKESSSVLSCDISVDDKYIVTGSG 326 (337)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------EEECSSCEEEEEECTTSCEEEEEET
T ss_pred ccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE--------------EccCCCCEEEEEEeCCCCEEEEEeC
Confidence 45688999999999999999999999999999999887652 234778999999985 49999999
Q ss_pred CCeEEEeeC
Q 041325 378 DNTIRIWRR 386 (450)
Q Consensus 378 dg~v~iwd~ 386 (450)
||.|+|||+
T Consensus 327 D~~I~vWdl 335 (337)
T d1gxra_ 327 DKKATVYEV 335 (337)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-35 Score=261.87 Aligned_cols=289 Identities=18% Similarity=0.232 Sum_probs=215.3
Q ss_pred ceEEEEE--eCCEEEEeeCCC-cEEEecCCCCCceeeeecCCCCcceeEEecC-CCceEEEEEeCC----eEEEEeCCCe
Q 041325 77 YIPSLAI--AGKLLYGGSSNG-EIRAWNRDPNNYVNITSTDVGDHANVVATGN-GDAVKSLVVLGD----KLFSAHQDHK 148 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~----~l~s~~~dg~ 148 (450)
.+++++| +++.|+.++.+. .|+.|+......... ..+.+| ...|++++|+|+ .|++|+.||+
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~----------~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV----------VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE----------EEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccce----------EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCC
Confidence 4567788 688998886554 356776544332211 235576 468999999863 2889999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+....... .+.......+..|.++|.+++|++++++++++
T Consensus 89 i~iWd~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 133 (325)
T d1pgua1 89 VIVWGWTFDKESN-----------------------------------SVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133 (325)
T ss_dssp EEEEEEEEEGGGT-----------------------------------EEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEeeecCCccee-----------------------------------eeecccccccccccCcEEEEEECCCCCcccee
Confidence 9999987652210 00011122344688899999999999998887
Q ss_pred eC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 229 SW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 229 ~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+. ++.+++|+..+++.+..+. .|...|.+++|+|..+.++++++.|+.+++||....+.. ........|...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~-----~~~~~~~~~~~~ 207 (325)
T d1pgua1 134 GEGRDNFGVFISWDSGNSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-----ASDRTHHKQGSF 207 (325)
T ss_dssp ECCSSCSEEEEETTTCCEEEECC-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-----EEECSSSCTTCC
T ss_pred eccccceEEEEeecccccceeee-ecccccccccccccccceEEEeecccccccccccccccc-----eecccccCCCCc
Confidence 64 6789999999999999887 899999999999977767889999999999998665411 123334567888
Q ss_pred eEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce----EEEEEe-CCeEEEEeCCCe
Q 041325 307 VTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI----LCLAVV-SNLLFSGSSDNT 380 (450)
Q Consensus 307 i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v----~~~~~~-~~~l~s~~~dg~ 380 (450)
|.+++|+|+ +++|++++.||.|++||+++++.+ ..+.+|...+ .++.+. +.+|++++.|+.
T Consensus 208 v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~-------------~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~ 274 (325)
T d1pgua1 208 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL-------------KYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 274 (325)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE-------------EECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred cEEeeeccccceeccccccccceeeeeecccccc-------------ccccccccccccceeeeeccCCCEEEEEeCCCe
Confidence 999999996 689999999999999999988765 4455555554 455554 569999999999
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCc--ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRR--PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|+|||++++ +++..+..|.. .+..+++.+.+.. +|+++|.||.|++|||
T Consensus 275 i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~------------~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 275 IRVWDVTTS--------KCVQKWTLDKQQLGNQQVGVVATGNG------------RIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEETTTT--------EEEEEEECCTTCGGGCEEEEEEEETT------------EEEEEETTSCEEEEET
T ss_pred EEEEECCCC--------CEEEEEEecCCcccCeEEEEEECCCC------------EEEEEECCCEEEEEEC
Confidence 999999975 56666655443 4555555554332 7999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5e-34 Score=258.78 Aligned_cols=325 Identities=14% Similarity=0.172 Sum_probs=219.6
Q ss_pred CCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe------CC---eEEEE
Q 041325 73 GNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL------GD---KLFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~---~l~s~ 143 (450)
+|.+.|.++++++++|+||+.||+|+|||..+.+.... .........|...+..+... +. .++++
T Consensus 12 ~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 12 AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred cccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcc------cceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 99999999999999999999999999999766542111 11112233454444333321 11 17789
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-- 221 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 221 (450)
+.||.|++|++.......... ..... ......+...+..+++.++
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~--------~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~ 132 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVI--------FEKLD-------------------------LLDSDMKKHSFWALKWGASND 132 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEE--------EEEEC-------------------------CSCTTGGGSCEEEEEEECCC-
T ss_pred eCCCcEEEEEccCCCceeeee--------ccccc-------------------------eeeeccCCCceEEEEEecCCC
Confidence 999999999987552210000 00000 0001124456677777664
Q ss_pred ---CCEEEEEeCCCcEEEEecCCCe---------------EEEEe--ecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 222 ---GSLLYSTSWDRTFKIWRTSDFR---------------CLESV--KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 222 ---~~~l~~~~~dg~i~iwd~~~~~---------------~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
+.++++++.||.+++||+.... ..... ...+...+.+++|+| +++|++|+.||.|++|
T Consensus 133 ~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~lasgs~Dg~i~iw 210 (393)
T d1sq9a_ 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQIS 210 (393)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TSEEEEECTTSEEEEE
T ss_pred cccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CCEEEEEeCCCcEEEE
Confidence 4678999999999999974211 00111 123456688999996 4599999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc---EEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS---ILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+.+++.. ........+.+|...|++++|+|+|++|++|+.|+. |++||+.+++.+..+............+.+|
T Consensus 211 d~~~~~~~--~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH 288 (393)
T d1sq9a_ 211 ELSTLRPL--YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH 288 (393)
T ss_dssp ETTTTEEE--EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSB
T ss_pred eecccccc--cccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecc
Confidence 99876521 222344566789999999999999999999999874 9999999999887766655555566677899
Q ss_pred ccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE----EEEEEecCCCCC---------
Q 041325 359 TKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK----CLTAVVDSDYSN--------- 423 (450)
Q Consensus 359 ~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~----~l~~~~~~~~~~--------- 423 (450)
...|++++|++ ++|++|+.|++|++||++++ +++..+.+|...|. .++|++++....
T Consensus 289 ~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g--------~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (393)
T d1sq9a_ 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 360 (393)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEE
T ss_pred cCceeeeccCCCCCeeEEECCCCEEEEEECCCC--------CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEE
Confidence 99999999985 49999999999999999985 78888999876553 234444433211
Q ss_pred -----CCCCCCCceEEEEEcccCCcEEEEE
Q 041325 424 -----RNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 424 -----~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
...........+++++.|+.|++|.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 361 LKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp ECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred CccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 1111222334689999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-34 Score=259.97 Aligned_cols=296 Identities=18% Similarity=0.326 Sum_probs=212.7
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
+..++...+|+....+.... ......+|.+.|++|+|++++ |++|+ |++|++||+.+++..........
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~--------~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~ 104 (388)
T d1erja_ 34 KQTNDYYILYNPALPREIDV--------ELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSA 104 (388)
T ss_dssp EECSSCEEEECTTSCCCEEE--------EEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC---
T ss_pred cCCCCcEEEeCCCCCcceee--------eeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeeccccc
Confidence 55678889999765543322 111234799999999999887 66665 99999999998854322211110
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
.... ...........|...|++++|+|++++|++|+.||.|++||...++.+..+
T Consensus 105 ~~~~-------------------------~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~ 159 (388)
T d1erja_ 105 ANKD-------------------------PENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL 159 (388)
T ss_dssp ---------------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred cccc-------------------------ccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccc
Confidence 0000 000111223468889999999999999999999999999999999998888
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCc
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRS 327 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~ 327 (450)
. .|...|.++.+++. ...+++++.++.+++||.++.. .......+ ....++.+.+ ++++|++|+.||.
T Consensus 160 ~-~h~~~v~~~~~~~~-~~~~~~~~~~~~i~~~d~~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~ 228 (388)
T d1erja_ 160 Q-GHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQ--------CSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRA 228 (388)
T ss_dssp C-CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE--------EEEEEECS-SCEEEEEECSTTCCEEEEEETTSC
T ss_pred c-cccccccccccccc-cccccccccceeeeeeeccccc--------cccccccc-cccccccccCCCCCeEEEEcCCCe
Confidence 7 89999999999984 4488999999999999987654 23333333 3445555554 8899999999999
Q ss_pred EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCcccc----CCCceeEE
Q 041325 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDH----QKGYSCLA 401 (450)
Q Consensus 328 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~~ 401 (450)
|++||..+++.+..+.. ......+|...|.+++|++ ++|++|+.||.|++||+..+.... .....+..
T Consensus 229 i~i~~~~~~~~~~~~~~------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 302 (388)
T d1erja_ 229 VRVWDSETGFLVERLDS------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302 (388)
T ss_dssp EEEEETTTCCEEEEEC------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEE
T ss_pred EEEeecccCccceeecc------ccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceee
Confidence 99999998876643221 1234467899999999985 499999999999999998653211 12234556
Q ss_pred EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 402 VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 402 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
....|...|.+++|+|+++ +|++|+.||.|++||++
T Consensus 303 ~~~~~~~~v~~~~~s~~~~-------------~l~sg~~dg~i~vwd~~ 338 (388)
T d1erja_ 303 TYIGHKDFVLSVATTQNDE-------------YILSGSKDRGVLFWDKK 338 (388)
T ss_dssp EEECCSSCEEEEEECGGGC-------------EEEEEETTSEEEEEETT
T ss_pred ecccccceEEEEEECCCCC-------------EEEEEeCCCEEEEEECC
Confidence 6778999999999999999 99999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-34 Score=253.30 Aligned_cols=274 Identities=23% Similarity=0.429 Sum_probs=232.1
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|+...+.+.+.+..++ ++...+++++++++ +|...|.++++ ++.++++
T Consensus 19 ~I~~l~~sp~~~~l~s~s~Dg~i~--------------------iWd~~~~~~~~~~~--~h~~~V~~~~~~~~~~~~~~ 76 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASEDATIK--------------------VWDYETGDFERTLK--GHTDSVQDISFDHSGKLLAS 76 (317)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEE--------------------EEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred CeEEEEEcCCCCEEEEEeCCCeEE--------------------EEECCCCCEEEEEe--CCCCcEEEEeeecccccccc
Confidence 456667777776666665555443 34445667888888 99999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
++.++.+.+|+....+.... +.+|...+.++.++++. +++++.|+.+++||++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--------- 135 (317)
T d1vyhc1 77 CSADMTIKLWDFQGFECIRT------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC--------- 135 (317)
T ss_dssp EETTSCCCEEETTSSCEEEC------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE---------
T ss_pred cccccccccccccccccccc------------cccccccceeeeccCCCceEEeeccCcceeEeeccccee---------
Confidence 99999999999887775544 56888999999999766 99999999999999998732
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
...+..|...+.+++|++++++|++++.|+.|++|+..+++....+
T Consensus 136 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~ 181 (317)
T d1vyhc1 136 ----------------------------------VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181 (317)
T ss_dssp ----------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ----------------------------------eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEE
Confidence 2233468889999999999999999999999999999999998888
Q ss_pred ecccccceEEEEEeecCC-------------------cEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 249 KNAHDDAINAIVVSKSND-------------------GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~-------------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
. .+...+.++.+.|... .++++++.|+.|++||+++++ .+..+.+|...|.+
T Consensus 182 ~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--------~~~~~~~~~~~v~~ 252 (317)
T d1vyhc1 182 R-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--------CLMTLVGHDNWVRG 252 (317)
T ss_dssp C-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--------EEEEEECCSSCEEE
T ss_pred e-cCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc--------EEEEEeCCCCCEEE
Confidence 7 7888999999886432 368899999999999998766 66777889999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEee
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWR 385 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd 385 (450)
++|+|++++|++|+.||.|++||+.+++.+ ..+.+|...|++++|++ ++|++|+.||+|++||
T Consensus 253 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCM-------------KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSCCC-------------EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCCCEEEEEECCCeEEEEECCCCcEE-------------EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999999988754 56788999999999985 4999999999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.7e-34 Score=257.53 Aligned_cols=256 Identities=13% Similarity=0.130 Sum_probs=202.2
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
..++|+|++|++++ |++|+.||.|++||++.++. ...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-----------------------------------------~~~ 44 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-----------------------------------------VQV 44 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------EEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-----------------------------------------EEE
Confidence 34689999999887 88999999999999987632 112
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
..+.+|.++|.+++|+|++++|++|+.|++|++||+.++.....+. ..|...|.+++|+|+ +..+++++.|+.|++|+
T Consensus 45 ~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~l~~~s~d~~i~i~~ 123 (371)
T d1k8kc_ 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVISICY 123 (371)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEEEEE
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccc-cccceeecccCcceeee
Confidence 2445799999999999999999999999999999998776544432 267889999999995 45899999999999999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCC-----CCCceeeeccccC
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDD-----DSGHMVLKGALRG 357 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~ 357 (450)
+.... ...........|...|.+++|+|++++|++|+.|+.|++|+............ .............
T Consensus 124 ~~~~~----~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (371)
T d1k8kc_ 124 FEQEN----DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 199 (371)
T ss_dssp EETTT----TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC
T ss_pred eeccc----ccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccC
Confidence 87654 22222334556889999999999999999999999999999876542211110 1111123445678
Q ss_pred CccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 358 HTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 358 ~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
|...|.+++|++ ++|++++.|+.|++||+.++ ..+..+..|..+|.+++|+|++. +|
T Consensus 200 ~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~--------~~~~~~~~~~~~v~s~~fs~d~~-------------~l 258 (371)
T d1k8kc_ 200 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK--------MAVATLASETLPLLAVTFITESS-------------LV 258 (371)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT--------TEEEEEECSSCCEEEEEEEETTE-------------EE
T ss_pred ccCcEEEEEeecccccccccccCCcceEEeeecc--------cceeeeecccccceeeeecCCCC-------------EE
Confidence 899999999985 59999999999999999874 67888899999999999999998 67
Q ss_pred EEcccCCcEEEEEe
Q 041325 436 YSGSLDCEIKIWQI 449 (450)
Q Consensus 436 ~s~~~Dg~i~iw~l 449 (450)
++| .|+.+++|..
T Consensus 259 a~g-~d~~~~~~~~ 271 (371)
T d1k8kc_ 259 AAG-HDCFPVLFTY 271 (371)
T ss_dssp EEE-TTSSCEEEEE
T ss_pred EEE-cCCceEEEEe
Confidence 665 4777777754
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-33 Score=252.64 Aligned_cols=313 Identities=20% Similarity=0.288 Sum_probs=223.9
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
....++...+++++++|+ +|.++|++++| ++.+|++|+.||.|++|+....+....... ..+...+.
T Consensus 33 g~i~vWd~~~~~~~~~l~--~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~----------~~~~~~~~ 100 (355)
T d1nexb2 33 KMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG----------HNSTVRCL 100 (355)
T ss_dssp TEEEEEETTTTEEEEEEE--CCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECC----------CSSCEEEE
T ss_pred CeEEEEECCCCcEEEEEE--CCCCCEEEEEEcCCCEEEEEeccccccccccccccccccccc----------cccccccc
Confidence 345566677789999999 99999999999 678999999999999999988776554221 12333445
Q ss_pred EEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 132 SLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 132 ~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
...+.++. +++++.|+.|++||+............... ........... ........|
T Consensus 101 ~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----------------~~~~~~~~~ 160 (355)
T d1nexb2 101 DIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY----PLVFHTPEENP----------------YFVGVLRGH 160 (355)
T ss_dssp EEEEETTEEEEEEEETTSEEEEEECCC-----------CC----CEEESCTTTCT----------------TEEEEEECC
T ss_pred ccccccccceeeeecCCCcEEEEEccCCceecccccccee----ccceecccccc----------------ceeeeeeec
Confidence 55666666 899999999999999877432111110000 00000000000 011112235
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
...+.. +.+++++++++..|+.|++||+.+++.+.... .+...+.++.+++. ...+++++.|+.|++||++++.
T Consensus 161 ~~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~-- 234 (355)
T d1nexb2 161 MASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLENGE-- 234 (355)
T ss_dssp SSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTCC--
T ss_pred cccccc--cccccceeeeecccceeeeeecccccceeeee-cccccccccccccc-ceeeecccccceEEeeeccccc--
Confidence 555543 45568899999999999999999999888877 77888999999984 4589999999999999997766
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE--
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV-- 367 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-- 367 (450)
.+..+.+|...|.+++++ +++|++|+.||.|++||+++.... +..|...+.++.+
T Consensus 235 ------~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~~~~~~~ 291 (355)
T d1nexb2 235 ------LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK---------------FSYHHTNLSAITTFY 291 (355)
T ss_dssp ------EEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE---------------EEEECTTCCCCCEEE
T ss_pred ------cccccccccccccccccc--cceeeeeeccccccccccccccee---------------cccccCCceEEEEEc
Confidence 566778899999999996 579999999999999999876533 3344444444433
Q ss_pred -eCCeEEEEeCCCeEEEeeCCCCccccCCCceeEE-EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 368 -VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA-VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 368 -~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++.++++ +.||.|++||++++ +++. .+.+|..+|.+++|+|+ . ++++++.||.++
T Consensus 292 ~~~~~l~~-g~d~~i~vwd~~tg--------~~~~~~~~~~~~~V~~v~~~~~-~-------------~~~~~s~dg~~~ 348 (355)
T d1nexb2 292 VSDNILVS-GSENQFNIYNLRSG--------KLVHANILKDADQIWSVNFKGK-T-------------LVAAVEKDGQSF 348 (355)
T ss_dssp ECSSEEEE-EETTEEEEEETTTC--------CBCCSCTTTTCSEEEEEEEETT-E-------------EEEEEESSSCEE
T ss_pred CCCCEEEE-EeCCEEEEEECCCC--------CEEEEEecCCCCCEEEEEEcCC-e-------------EEEEEECCCcEE
Confidence 3445555 56999999999985 3342 46789999999999876 4 788999999977
Q ss_pred EEEe
Q 041325 446 IWQI 449 (450)
Q Consensus 446 iw~l 449 (450)
||.+
T Consensus 349 l~~~ 352 (355)
T d1nexb2 349 LEIL 352 (355)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-33 Score=245.78 Aligned_cols=255 Identities=14% Similarity=0.203 Sum_probs=193.3
Q ss_pred eeeeEEeecCCC-cceEEEEE----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 64 QCSATLKVKGNS-SYIPSLAI----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 64 ~~~~~l~~~~h~-~~v~~~~~----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
..+..+. +|. ..|++++| ++.+|++|+.||+|+|||+..++........ ....+..|.++|.+++|+++
T Consensus 53 ~~~~~~~--gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~----~~~~~~~~~~~v~~v~~s~~ 126 (325)
T d1pgua1 53 PPVVQFT--GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVN----VKSEFQVLAGPISDISWDFE 126 (325)
T ss_dssp CSEEEEC--TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEE----EEEEEECCSSCEEEEEECTT
T ss_pred cceEEEe--CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecc----cccccccccCcEEEEEECCC
Confidence 3445555 875 68999999 5789999999999999998765543321111 11235678899999999987
Q ss_pred e--EEEEe--CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 139 K--LFSAH--QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 139 ~--l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
. +++++ .++.+++|++++++ .+. .+.+|...|.
T Consensus 127 ~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~---------------------------~~~~h~~~v~ 163 (325)
T d1pgua1 127 GRRLCVVGEGRDNFGVFISWDSGN----------------SLG---------------------------EVSGHSQRIN 163 (325)
T ss_dssp SSEEEEEECCSSCSEEEEETTTCC----------------EEE---------------------------ECCSCSSCEE
T ss_pred CCccceeeccccceEEEEeecccc----------------cce---------------------------eeeecccccc
Confidence 6 55544 47889999998772 222 2336889999
Q ss_pred EEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeec--ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 215 ALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKN--AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 215 ~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+++|+|++++ +++++.|+.|++||....+....+.. .|...|.+++|+|+...++++++.||.|++||+++++
T Consensus 164 ~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~---- 239 (325)
T d1pgua1 164 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE---- 239 (325)
T ss_dssp EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC----
T ss_pred cccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccc----
Confidence 9999998765 67899999999999998887666542 5677899999999777789999999999999997766
Q ss_pred ccchhhhhHhhcccceEEEEEc---CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc--eEEEE
Q 041325 292 KKHSLVQTLEKHKSAVTALALS---TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA--ILCLA 366 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~---~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~ 366 (450)
.+..+.+|...+..+.|+ |++++|++++.|+.|+|||+++++.+. ......|... ..++.
T Consensus 240 ----~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 304 (325)
T d1pgua1 240 ----FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQ-----------KWTLDKQQLGNQQVGVV 304 (325)
T ss_dssp ----EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEE-----------EEECCTTCGGGCEEEEE
T ss_pred ----ccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEE-----------EEEecCCcccCeEEEEE
Confidence 556666777766655555 689999999999999999999987652 1122233322 34555
Q ss_pred EeC-CeEEEEeCCCeEEEeeC
Q 041325 367 VVS-NLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 367 ~~~-~~l~s~~~dg~v~iwd~ 386 (450)
+.+ .+|++++.||.|++||+
T Consensus 305 ~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 305 ATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTEEEEEETTSCEEEEET
T ss_pred ECCCCEEEEEECCCEEEEEEC
Confidence 664 48999999999999996
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-31 Score=236.33 Aligned_cols=279 Identities=20% Similarity=0.327 Sum_probs=222.3
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|+...+.+.+.+..+ .++...+++.++++. +|...|++++| +++++++
T Consensus 57 ~I~~l~~s~~~~~l~sgs~Dg~v--------------------~iWd~~~~~~~~~~~--~~~~~v~~v~~~~~~~~l~~ 114 (340)
T d1tbga_ 57 KIYAMHWGTDSRLLVSASQDGKL--------------------IIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEE--------------------EEEETTTTEEEEEEE--CSCSCEEEEEECTTSSEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCce--------------------eeeecccceeEEEEe--cccccEEeeEeeccceeeee
Confidence 35556666666666665554444 445556678889998 99999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCccc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
|+.|+.+++|+......... ....+.+|...........+. +.....|.....|.......
T Consensus 115 ~~~d~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 176 (340)
T d1tbga_ 115 GGLDNICSIYNLKTREGNVR--------VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ---------- 176 (340)
T ss_dssp EETTCCEEEEESSSSCSCCC--------EEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEE----------
T ss_pred ecccceeecccccccccccc--------cceecccccccccccccccccccccccccccccccccccccc----------
Confidence 99999999999776543222 122356777777766666444 88888999999998877622
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (450)
......+...+....+.+.+.++++|+.|+.|++||+++++.+..+.
T Consensus 177 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~ 223 (340)
T d1tbga_ 177 ---------------------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223 (340)
T ss_dssp ---------------------------------EEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred ---------------------------------cccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEe
Confidence 11122466678899999999999999999999999999999999988
Q ss_pred cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEE
Q 041325 250 NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSIL 329 (450)
Q Consensus 250 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~ 329 (450)
.|...|.+++|+|+ ..+|++|+.||.|++||++..... .......+...|.+++|+|++++|++|+.||.|+
T Consensus 224 -~h~~~i~~v~~~p~-~~~l~s~s~d~~i~~~~~~~~~~~------~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~ 295 (340)
T d1tbga_ 224 -GHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQEL------MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp -CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTEEE------EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEE
T ss_pred -CCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeecccccc------cccccccccCceEEEEECCCCCEEEEEECCCEEE
Confidence 89999999999984 458999999999999999765411 1122345667899999999999999999999999
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEee
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd 385 (450)
+||+.+++.+ ..+.+|..+|++++|+++ +|++|+.||.|++||
T Consensus 296 iwd~~~~~~~-------------~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 296 VWDALKADRA-------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTCCEE-------------EEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCcEE-------------EEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999988765 577889999999999854 999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=8.4e-32 Score=234.73 Aligned_cols=283 Identities=16% Similarity=0.179 Sum_probs=212.0
Q ss_pred CcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE
Q 041325 11 CRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL 88 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l 88 (450)
...+..++|+|+...+.+.+.+..+.. +...++++++++. .+|...|++++| +++ +
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~v--------------------Wd~~~~~~~~~~~-~~h~~~v~~v~~~~~g~-~ 69 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINS--------------------WDISTGISNRVFP-DVHATMITGIKTTSKGD-L 69 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEE--------------------EETTTCCEEECSS-CSCSSCEEEEEECTTSC-E
T ss_pred CCCcEEEEECCCCCEEEEEcCCCeEEE--------------------EECCCCcEEEEEc-CCCCCcEEEEEeeccce-e
Confidence 346788899999988888766665543 2223345555542 279999999999 555 5
Q ss_pred EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCc
Q 041325 89 YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGK 167 (450)
Q Consensus 89 ~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 167 (450)
++++.|+.+++|+......... ......+...+.+++++++. +++++.++.+++|+......
T Consensus 70 ~~~~~d~~v~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~-------- 132 (299)
T d1nr0a2 70 FTVSWDDHLKVVPAGGSGVDSS---------KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTE-------- 132 (299)
T ss_dssp EEEETTTEEEEECSSSSSSCTT---------SCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEE--------
T ss_pred ecccceeeEEEeccCCcccccc---------ccccccccccccccccccccccccccccccccccccccccc--------
Confidence 6677889999999875442211 11244677889999999887 66777788999998543210
Q ss_pred ccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEE
Q 041325 168 LKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLES 247 (450)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 247 (450)
......+.+++|+|+++++++|+.||.|++||+++++....
T Consensus 133 ---------------------------------------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~ 173 (299)
T d1nr0a2 133 ---------------------------------------VPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEV 173 (299)
T ss_dssp ---------------------------------------EECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEE
T ss_pred ---------------------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence 01233578899999999999999999999999998876654
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
....|...|.+++|+|+ ..++++++.|+.|++||+.++. .......+..|...|++++|+|++++|++|+.||.
T Consensus 174 ~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~~-----~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~ 247 (299)
T d1nr0a2 174 KTIVHPAEITSVAFSNN-GAFLVATDQSRKVIPYSVANNF-----ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS 247 (299)
T ss_dssp EEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEEGGGTT-----EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccccccccccccccccc-cccccccccccccccccccccc-----cccccccccccccccccccccccccceEEEcCCCE
Confidence 44468899999999984 4589999999999999987654 11233455678899999999999999999999999
Q ss_pred EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCC
Q 041325 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 328 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~ 387 (450)
|++||+++++.. ........+...+.++.+. +++|++++.||.|++||+.
T Consensus 248 i~iwd~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 248 VIVWNMNKPSDH----------PIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTCTTSC----------CEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred EEEEECCCCCcc----------eEEEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence 999999876422 1112223345667777775 5699999999999999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.6e-31 Score=236.80 Aligned_cols=304 Identities=11% Similarity=0.079 Sum_probs=210.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.++.++ +|.+.|++|+| ++++||+|+.||+|+|||++........ ....+|.++|.+++|+++.
T Consensus 2 ~~v~~~~--~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~---------~~~~~h~~~V~~v~f~~~~~~ 70 (342)
T d1yfqa_ 2 QIVQIEQ--APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL---------LQSLRYKHPLLCCNFIDNTDL 70 (342)
T ss_dssp EEEECSS--CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE---------EEEEECSSCEEEEEEEESSSE
T ss_pred CeEEcCC--CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEE---------EEecCCCCCEEEEEEeCCCCC
Confidence 4556566 99999999999 8999999999999999998776543321 1234799999999998643
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.||.|++|++....... ... ..+........+
T Consensus 71 ~l~sg~~d~~v~~w~~~~~~~~~----------------~~~--------------------------~~~~~~~~~~~~ 108 (342)
T d1yfqa_ 71 QIYVGTVQGEILKVDLIGSPSFQ----------------ALT--------------------------NNEANLGICRIC 108 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSEE----------------ECB--------------------------SCCCCSCEEEEE
T ss_pred EEEEcccccceeeeecccccccc----------------ccc--------------------------cccccccccccc
Confidence 9999999999999998773211 110 013334455566
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEe----ec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESV----KN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.++...+++++.++.+++||++.+...... .. ........+.+.+ ....+++++.|+.|++||++......
T Consensus 109 ~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~--- 184 (342)
T d1yfqa_ 109 KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMNNSQVQWFRLPLCEDDN--- 184 (342)
T ss_dssp EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEESTTEEEEEESSCCTTCC---
T ss_pred ccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecCCCcEEEEecccCcccc---
Confidence 678889999999999999998654322221 10 1122334455555 45589999999999999997665111
Q ss_pred chhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC--ceeeeccccCCccceEEEEEeC-
Q 041325 294 HSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSG--HMVLKGALRGHTKAILCLAVVS- 369 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~- 369 (450)
...........+.+..+.+ ++..+++++.||.+.+|+............... ..........|...|++++|++
T Consensus 185 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~ 262 (342)
T d1yfqa_ 185 --GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp --CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT
T ss_pred --eeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCC
Confidence 1111122334455555544 778999999999999999876543321111100 0011223456778899999985
Q ss_pred -CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 370 -NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 370 -~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
++|++|+.||.|++||++++ +.+..+..+ ..+..++|+|+++ ++++|+.|+.+++|.
T Consensus 263 ~~~lasg~~Dg~v~vWD~~~~--------~~l~~~~~~-~~~~~~~~s~~~~-------------~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 263 HKFLYTAGSDGIISCWNLQTR--------KKIKNFAKF-NEDSVVKIACSDN-------------ILCLATSDDTFKTNA 320 (342)
T ss_dssp TCCEEEEETTSCEEEEETTTT--------EEEEECCCC-SSSEEEEEEECSS-------------EEEEEEECTHHHHCS
T ss_pred ccEEEEECCCCEEEEEECCCC--------cEEEEecCC-CCCEEEEEEeCCC-------------EEEEEEcCCcEEEee
Confidence 49999999999999999974 566666533 3456678889998 899999898877764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.6e-30 Score=229.11 Aligned_cols=236 Identities=30% Similarity=0.562 Sum_probs=172.4
Q ss_pred EEecCCCce-EEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 122 VATGNGDAV-KSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 122 ~~~~h~~~v-~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
++.||.+.| .++.++++.|+||+.||+|++||+.+++. +.
T Consensus 11 ~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~----------------~~----------------------- 51 (342)
T d2ovrb2 11 VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKC----------------LR----------------------- 51 (342)
T ss_dssp EEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCE----------------EE-----------------------
T ss_pred EECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCE----------------EE-----------------------
Confidence 488999987 46788888899999999999999998732 22
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEE----------------------
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINA---------------------- 258 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~---------------------- 258 (450)
.+.+|.+.|.+++|+++ +|++|+.|+.+++|+........... .+...+..
T Consensus 52 ----~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~ 124 (342)
T d2ovrb2 52 ----TLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124 (342)
T ss_dssp ----ECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEES
T ss_pred ----EEeCCCCCEEEEEeCCC--ccccceecccccccccccccceeccc-ccceeEeeeecccccccccccceeEEEeec
Confidence 23357777888877753 77777888888888776554333322 11111111
Q ss_pred ----------------EEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 259 ----------------IVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 259 ----------------~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
....+ ....++.++.|+.|++||.+... .+..+.+|...+..+. +++.+|++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~--~~~~~l~s~ 193 (342)
T d2ovrb2 125 ETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWDPETET--------CLHTLQGHTNRVYSLQ--FDGIHVVSG 193 (342)
T ss_dssp SSCCEEEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEEEGGGTE--------EEEEECCCSSCEEEEE--ECSSEEEEE
T ss_pred ccccceeeeecccccceeecc-ccceeeeecCCCeEEEeecccce--------eeEEEcCccccccccc--CCCCEEEEE
Confidence 11111 33467778888888888876554 4455566666555544 478899999
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEE
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV 402 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 402 (450)
+.||.|++||++.++.+ ....+|...+.++++++++|++++.||.|++||+... +....
T Consensus 194 ~~dg~i~~~d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~--------~~~~~ 252 (342)
T d2ovrb2 194 SLDTSIRVWDVETGNCI-------------HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG--------QCLQT 252 (342)
T ss_dssp ETTSCEEEEETTTCCEE-------------EEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTC--------CEEEE
T ss_pred eCCCeEEEeecccceee-------------eEecccccceeEEecCCCEEEEEcCCCEEEEEecccc--------ccccc
Confidence 99999999999988755 5677899999999999999999999999999999863 33344
Q ss_pred e---cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 403 L---EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 403 ~---~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+ ..|...+.++.++ +. ++++|+.||+|++||++
T Consensus 253 ~~~~~~~~~~~~~~~~~--~~-------------~~~s~s~Dg~i~iwd~~ 288 (342)
T d2ovrb2 253 LQGPNKHQSAVTCLQFN--KN-------------FVITSSDDGTVKLWDLK 288 (342)
T ss_dssp ECSTTSCSSCEEEEEEC--SS-------------EEEEEETTSEEEEEETT
T ss_pred ccccceeeeceeecccC--CC-------------eeEEEcCCCEEEEEECC
Confidence 4 3456667766664 45 89999999999999974
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7e-30 Score=221.15 Aligned_cols=273 Identities=24% Similarity=0.392 Sum_probs=208.6
Q ss_pred cCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEE
Q 041325 19 FQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIR 98 (450)
Q Consensus 19 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~ 98 (450)
++|++..+.+++.+..++ ++...+++++++|+ +|.+.|++++|++++|++|+.||.|+
T Consensus 21 ~~~d~~~l~sgs~Dg~i~--------------------vWd~~~~~~~~~l~--~H~~~V~~v~~~~~~l~s~s~D~~i~ 78 (293)
T d1p22a2 21 LQYDDQKIVSGLRDNTIK--------------------IWDKNTLECKRILT--GHTGSVLCLQYDERVIITGSSDSTVR 78 (293)
T ss_dssp EECCSSEEEEEESSSCEE--------------------EEESSSCCEEEEEC--CCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred EEEcCCEEEEEeCCCeEE--------------------EEECCCCcEEEEEe--cCCCCEeeeecccceeeccccccccc
Confidence 455666666665555554 34455678899998 99999999999999999999999999
Q ss_pred EecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeee
Q 041325 99 AWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIAT 178 (450)
Q Consensus 99 vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (450)
+|++..+..... ...+.............++++..++.+++|+........
T Consensus 79 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 129 (293)
T d1p22a2 79 VWDVNTGEMLNT------------LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT----------------- 129 (293)
T ss_dssp EEESSSCCEEEE------------ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCE-----------------
T ss_pred cccccccccccc------------ccccccccccccccccceeecccccceeEeecccccccc-----------------
Confidence 999998876554 223333444444445669999999999999998763210
Q ss_pred ccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEE
Q 041325 179 LPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINA 258 (450)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~ 258 (450)
....+..|...+..+.+. ...+++++.|+.|++||+.+++.+..+. .+...+..
T Consensus 130 -----------------------~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~-~~~~~v~~ 183 (293)
T d1p22a2 130 -----------------------LRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIAC 183 (293)
T ss_dssp -----------------------EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEE
T ss_pred -----------------------ccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEc-cccccccc
Confidence 111223577788777765 4568889999999999999999998887 77788888
Q ss_pred EEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 259 IVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 259 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
+.+. +..+++++.||.|++||+++.. .+.....+...+.. +++++.+|++|+.||.|++||+.....
T Consensus 184 ~~~~---~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~ 250 (293)
T d1p22a2 184 LQYR---DRLVVSGSSDNTIRLWDIECGA--------CLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALD 250 (293)
T ss_dssp EEEE---TTEEEEEETTSCEEEEETTTCC--------EEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTS
T ss_pred ccCC---CCeEEEecCCCEEEEEecccce--------eeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCcc
Confidence 8776 3489999999999999997765 45556667777664 456788999999999999999875432
Q ss_pred eeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEee
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd 385 (450)
... .........+.+|...|++++|++++|++|+.||+|++||
T Consensus 251 ~~~----~~~~~~~~~~~~H~~~V~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 251 PRA----PAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTS----CTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC
T ss_pred ccc----cCCceeeEEecCCCCCEEEEEEcCCEEEEEecCCEEEEeC
Confidence 210 1112234567889999999999999999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.2e-30 Score=231.61 Aligned_cols=270 Identities=14% Similarity=0.160 Sum_probs=180.8
Q ss_pred EecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 123 ATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
..+|.+.|.+++++++.+++++.|++|++||........ +.. ...
T Consensus 10 ~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~-------~~~--~~~-------------------------- 54 (393)
T d1sq9a_ 10 GKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNEN-------PKD--KSY-------------------------- 54 (393)
T ss_dssp SSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCC-------GGG--GEE--------------------------
T ss_pred CCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCc-------ccc--eeE--------------------------
Confidence 569999999999999999999999999999987653100 000 000
Q ss_pred eeeeecCCCc------eEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEee---------cccccceEEEEEeecCC
Q 041325 203 KCTWVHHVDT------VSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVK---------NAHDDAINAIVVSKSND 266 (450)
Q Consensus 203 ~~~~~~~~~~------v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~ 266 (450)
....|... ...+..+. ++.++++++.||.|++|++........+. ..+...+..+++.+...
T Consensus 55 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (393)
T d1sq9a_ 55 --SHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132 (393)
T ss_dssp --EEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-
T ss_pred --eeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCC
Confidence 00012222 22222222 34568899999999999876432211110 12445677888876432
Q ss_pred ----cEEEEEcCCCcEEEEeCcchhhhcc---c-------cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 041325 267 ----GFVYTGSADTKIKVWKKLRAALQVN---K-------KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332 (450)
Q Consensus 267 ----~~l~~~~~dg~i~vwd~~~~~~~~~---~-------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd 332 (450)
.++++++.||.+++|++........ . ..........+...+.+++|+|++ +|++|+.||.|++||
T Consensus 133 ~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd 211 (393)
T d1sq9a_ 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE 211 (393)
T ss_dssp ---CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEE
T ss_pred cccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEe
Confidence 4689999999999999854321000 0 000111122344568899999987 899999999999999
Q ss_pred cCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC---eEEEeeCCCCcccc-----CCCceeEEE
Q 041325 333 RDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN---TIRIWRRSSSVTDH-----QKGYSCLAV 402 (450)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg---~v~iwd~~~~~~~~-----~~~~~~~~~ 402 (450)
+.+++.+.. ......+.+|..+|.+++|++ ++|++|+.|+ .|++||++++.... .........
T Consensus 212 ~~~~~~~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~ 284 (393)
T d1sq9a_ 212 LSTLRPLYN-------FESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 284 (393)
T ss_dssp TTTTEEEEE-------EECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------C
T ss_pred ecccccccc-------cccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceee
Confidence 999876632 122345678999999999985 4999999987 49999998752110 111223334
Q ss_pred ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 403 LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 403 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.+|...|++|+|+|+++ +|+|||.|++|+|||++
T Consensus 285 ~~gH~~~V~~l~fspd~~-------------~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 285 EFAHSSWVMSLSFNDSGE-------------TLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp CBSBSSCEEEEEECSSSS-------------EEEEEETTSEEEEEETT
T ss_pred eecccCceeeeccCCCCC-------------eeEEECCCCEEEEEECC
Confidence 468999999999999999 99999999999999974
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=8.7e-29 Score=221.22 Aligned_cols=278 Identities=12% Similarity=0.077 Sum_probs=203.1
Q ss_pred eEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC--eEEEE
Q 041325 78 IPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH--KIRVW 152 (450)
Q Consensus 78 v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg--~i~iw 152 (450)
...++. ||+++|+++. |.|++||+.++..... +|...|.+++|+||+ |++++.+. .|++|
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~--------------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~ 71 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV--------------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY 71 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC--------------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEE
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc--------------cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEE
Confidence 455676 8999999875 8999999988775544 788999999999988 66655543 79999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
|.+++.. ..+..|...|.+++|+|++++|++++.++
T Consensus 72 d~~~~~~--------------------------------------------~~~~~~~~~v~~~~~spdg~~l~~~~~~~ 107 (360)
T d1k32a3 72 DYRTGKA--------------------------------------------EKFEENLGNVFAMGVDRNGKFAVVANDRF 107 (360)
T ss_dssp ETTTCCE--------------------------------------------EECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcE--------------------------------------------EEeeCCCceEEeeeecccccccceecccc
Confidence 9988732 12335888999999999999999999999
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEE----------EcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT----------GSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
.+++|++.+++....+. .+...+.+++|+|++. +|+. +..++.+++||+.+++ . .....
T Consensus 108 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--------~-~~~~~ 176 (360)
T d1k32a3 108 EIMTVDLETGKPTVIER-SREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDMEGRK--------I-FAATT 176 (360)
T ss_dssp EEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEETTTTE--------E-EECSC
T ss_pred ccccccccccceeeeee-cccccccchhhcccee-eeeeeccccccceeeccccceeeeccccCc--------e-eeecc
Confidence 99999999999888777 7888999999998655 5553 3345679999987654 2 22334
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee---------CCCCCCc---------e------------eee
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD---------GDDDSGH---------M------------VLK 352 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~---------~~~~~~~---------~------------~~~ 352 (450)
+...+..++|+|+|++|++++.++.+.+||......... ....... . ...
T Consensus 177 ~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 256 (360)
T d1k32a3 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS 256 (360)
T ss_dssp SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccce
Confidence 667788999999999999999999999999765432210 0000000 0 000
Q ss_pred c----------cccCCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 353 G----------ALRGHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 353 ~----------~~~~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
. .+..+...+..+.+.. .++++++.++.|++||+.++ + + ..|.+.|.+++|+|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--------~-~---~~~~~~v~~~~~Sp 324 (360)
T d1k32a3 257 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR--------K-V---TEVKNNLTDLRLSA 324 (360)
T ss_dssp EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC--------C-E---EEEEEEEEEEEECT
T ss_pred eecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC--------e-E---EEecCCcCEEEECC
Confidence 0 0111112222222221 15677788999999999863 1 1 23456799999999
Q ss_pred cCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 418 DSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++ +|++++.||.|++||++
T Consensus 325 DG~-------------~l~~~~~Dg~i~v~d~~ 344 (360)
T d1k32a3 325 DRK-------------TVMVRKDDGKIYTFPLE 344 (360)
T ss_dssp TSC-------------EEEEEETTSCEEEEESS
T ss_pred CCC-------------EEEEEECCCeEEEEECC
Confidence 999 99999999999999974
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=8.7e-28 Score=212.47 Aligned_cols=260 Identities=13% Similarity=0.083 Sum_probs=184.0
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
..+|.+.|++|+|+|+. |++|+.||+|++||++......
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~--------------------------------------- 47 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV--------------------------------------- 47 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE---------------------------------------
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce---------------------------------------
Confidence 56899999999999876 9999999999999998663110
Q ss_pred cceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
......+|..+|.+++|+++ +.+|++|+.||.|++|++............+........+.+ +...+++++.++.++
T Consensus 48 -~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 125 (342)
T d1yfqa_ 48 -DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIE 125 (342)
T ss_dssp -EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEE
T ss_pred -EEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccc-ccccccccccccccc
Confidence 11122358999999999986 568999999999999999988777776633333334444444 666899999999999
Q ss_pred EEeCcchhhhccccchhhhhHh--hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLE--KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+||++...... ....... ..........+.+++..+++++.|+.|++||+...+... .......
T Consensus 126 ~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~----------~~~~~~~ 191 (342)
T d1yfqa_ 126 VIDPRNYGDGV----IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN----------GTIEESG 191 (342)
T ss_dssp EECHHHHTTBC----EEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC----------CEEEECS
T ss_pred eeeccccccce----eeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc----------eeeeecc
Confidence 99987654211 1111111 122334556777788999999999999999998765321 1112223
Q ss_pred CccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCce-------eEEEecCCCcceEEEEEEecCCCCCCCCC
Q 041325 358 HTKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYS-------CLAVLEGHRRPVKCLTAVVDSDYSNRNSD 427 (450)
Q Consensus 358 ~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 427 (450)
+...+.+..+. +..+++++.||.+.+|++............ ......+|...|++++|+|++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~------- 264 (342)
T d1yfqa_ 192 LKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK------- 264 (342)
T ss_dssp CSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-------
T ss_pred cccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-------
Confidence 33445555544 458999999999999998754322111111 1112245777899999999999
Q ss_pred CCCceEEEEEcccCCcEEEEEeC
Q 041325 428 HSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 428 ~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|+||+.||.|++||++
T Consensus 265 ------~lasg~~Dg~v~vWD~~ 281 (342)
T d1yfqa_ 265 ------FLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ------CEEEEETTSCEEEEETT
T ss_pred ------EEEEECCCCEEEEEECC
Confidence 89999999999999974
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.8e-26 Score=199.35 Aligned_cols=229 Identities=16% Similarity=0.167 Sum_probs=178.9
Q ss_pred CCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEE
Q 041325 73 GNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIR 150 (450)
Q Consensus 73 ~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~ 150 (450)
+|...|.++++ ++..+++++.|++|++|++...+ ....+..+++.++. ++..+.++.+.
T Consensus 44 ~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (287)
T d1pgua2 44 DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE-------------------FGSQPKVASANNDGFTAVLTNDDDLL 104 (287)
T ss_dssp CCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE-------------------CSSCEEEEEECSSSEEEEEETTSEEE
T ss_pred CCCCCEEEEEecCCCeEEEEeeccccccccccccc-------------------cccceeeeeeccCCceEEEeecccce
Confidence 89999999999 67889999999999999965322 23456777887766 66667778899
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+|+..++.. +..+. +... ..++++++..+++++.
T Consensus 105 ~~~~~~~~~----------------~~~~~----------------------------~~~~--~~~~~~~~~~~~v~~~ 138 (287)
T d1pgua2 105 ILQSFTGDI----------------IKSVR----------------------------LNSP--GSAVSLSQNYVAVGLE 138 (287)
T ss_dssp EEETTTCCE----------------EEEEE----------------------------CSSC--EEEEEECSSEEEEEET
T ss_pred eeeccceee----------------eeecc----------------------------ccce--eeeeeccCcceeeecc
Confidence 999887732 11111 1222 3456677888888887
Q ss_pred CC-cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 231 DR-TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 231 dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
++ .+++|++...+....+...+...+.+++|+|++ .+|++|+.||.|++||+.+++. ....+..|...|.+
T Consensus 139 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~i~d~~~~~~-------~~~~~~~h~~~v~~ 210 (287)
T d1pgua2 139 EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREV-------KTSRWAFRTSKINA 210 (287)
T ss_dssp TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEE-------EECCSCCCSSCEEE
T ss_pred ccceeeeeeccccceeeeeeeccCCceeEEEeccCc-cccccccccccccceeeccccc-------ccccccccccccce
Confidence 65 799999988777777765788899999999854 4899999999999999976551 22345678899999
Q ss_pred EEEcCC----------CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCC
Q 041325 310 LALSTD----------GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSD 378 (450)
Q Consensus 310 l~~~~~----------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~d 378 (450)
++|+|+ +.+|++|+.|+.|++||++++.. ....+.+|...|++++|.++ .|++++.|
T Consensus 211 ~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~------------~~~~~~~h~~~V~~v~~~~~~~l~s~g~D 278 (287)
T d1pgua2 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK------------IIKALNAHKDGVNNLLWETPSTLVSSGAD 278 (287)
T ss_dssp EEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC------------CEEETTSSTTCEEEEEEEETTEEEEEETT
T ss_pred eeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe------------EEEEeCCCCCCeEEEEECCCCEEEEEECC
Confidence 999874 46899999999999999976432 22567789999999999855 89999999
Q ss_pred CeEEEeeC
Q 041325 379 NTIRIWRR 386 (450)
Q Consensus 379 g~v~iwd~ 386 (450)
|.|++|++
T Consensus 279 ~~v~iW~i 286 (287)
T d1pgua2 279 ACIKRWNV 286 (287)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEEE
Confidence 99999985
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=2.3e-24 Score=196.75 Aligned_cols=290 Identities=11% Similarity=0.067 Sum_probs=193.6
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.++++.+.||+|+|||+.+++.+.. +..| ..+..++|+||+ +++++.|++|++||+.+++...
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~------------l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~-- 97 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKV------------IDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK-- 97 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEE------------EECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE--
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE------------EeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE--
Confidence 3567888999999999999998776 4455 468999999888 8899999999999999884311
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~ 242 (450)
...++ ...+|.+.+.+++|+|||++++++ ..++.+++||..++
T Consensus 98 ------------~~~i~------------------------~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~ 141 (426)
T d1hzua2 98 ------------VAEIK------------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141 (426)
T ss_dssp ------------EEEEE------------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred ------------EEEEe------------------------CCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc
Confidence 11111 111355567778889999987554 58999999999999
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEEcCCCc-----------EEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-----------IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
+.+..+. .+...+..+.+.+......++.+.|+. +.+++..... ........+...+..++
T Consensus 142 ~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 213 (426)
T d1hzua2 142 EPKQIVS-TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-------NLTVTSIGAAPFLADGG 213 (426)
T ss_dssp CEEEEEE-CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS-------SCEEEEEECCSSEEEEE
T ss_pred ceeEEee-ccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc-------ceeeEEeccCCccEeee
Confidence 8887776 455444444444433333444444444 4444332211 01112234667788999
Q ss_pred EcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCC--------------------------C---------------Cce
Q 041325 312 LSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDD--------------------------S---------------GHM 349 (450)
Q Consensus 312 ~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~--------------------------~---------------~~~ 349 (450)
|+|++++++++.. +..+.+++..+++.+...... . ...
T Consensus 214 ~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~ 293 (426)
T d1hzua2 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW 293 (426)
T ss_dssp ECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBT
T ss_pred ECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccc
Confidence 9999998877764 566889998877654322111 0 001
Q ss_pred eeeccccCCccceEEEEEeCC--eEE-------EEeCCCeEEEeeCCCCccccCCCceeE-----EEecCCCcceEEEEE
Q 041325 350 VLKGALRGHTKAILCLAVVSN--LLF-------SGSSDNTIRIWRRSSSVTDHQKGYSCL-----AVLEGHRRPVKCLTA 415 (450)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~--~l~-------s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~h~~~v~~l~~ 415 (450)
.....+.+|...+..++++++ +|+ +++.|++|++||+.++.. ..+.. ..+..|...|.+++|
T Consensus 294 ~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~----~~~~~~~~~~~~~~~~~~rv~~~~f 369 (426)
T d1hzua2 294 KKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA----KYQVLPIAEWADLGEGAKRVVQPEY 369 (426)
T ss_dssp SEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTS----CCEEECHHHHHCCCSSCCCEEEEEE
T ss_pred eEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCc----CeEEeccchhcccCCCCccEEEEEE
Confidence 223346678888899999865 777 356689999999987521 11111 123356777999999
Q ss_pred EecCCCCCCCCCCCCceEEEEE----cccCCcEEEEEeC
Q 041325 416 VVDSDYSNRNSDHSSTSFLVYS----GSLDCEIKIWQIR 450 (450)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~s----~~~Dg~i~iw~l~ 450 (450)
+|||++ ++++ ++.||.|+|||.+
T Consensus 370 SpDGk~------------i~vs~~~~~~~~~~i~v~D~~ 396 (426)
T d1hzua2 370 NKRGDE------------VWFSVWNGKNDSSALVVVDDK 396 (426)
T ss_dssp CSSSSE------------EEEEECCCTTSCCEEEEEETT
T ss_pred CCCCCE------------EEEEEecCCCCCCeEEEEECC
Confidence 999982 3344 3578999999964
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.91 E-value=1.6e-21 Score=169.01 Aligned_cols=259 Identities=17% Similarity=0.204 Sum_probs=188.6
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeEEec
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
.++++.|++|.+||+++++.+... .....+..++|+|++ | ++++.++.|++||+.+++
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i-------------~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~------ 65 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATI-------------PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN------ 65 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE-------------ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE------
T ss_pred EEEECCCCEEEEEECCCCeEEEEE-------------ECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc------
Confidence 346778999999999999877652 222467899999886 4 567789999999999883
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE-EeCCCcEEEEecCCCe
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS-TSWDRTFKIWRTSDFR 243 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~ 243 (450)
.+..++ .+ ..+..+++++++..+++ +..++.+.+|+..+++
T Consensus 66 ----------~~~~~~---------------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (301)
T d1l0qa2 66 ----------VIATVP---------------------------AG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT 107 (301)
T ss_dssp ----------EEEEEE---------------------------CS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred ----------eeeeee---------------------------cc-ccccccccccccccccccccccceeeecccccce
Confidence 222222 22 24688999999886655 4567889999999999
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
....+. +.....++.++|++..+++++..++.+.+|+..+.. ....+. +...+..++++|+++.+++++
T Consensus 108 ~~~~~~--~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (301)
T d1l0qa2 108 VAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--------VINTVS-VGRSPKGIAVTPDGTKVYVAN 176 (301)
T ss_dssp EEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEEE-CCSSEEEEEECTTSSEEEEEE
T ss_pred eeeecc--ccccceEEEeecCCCeeeeeeccccceeeeeccccc--------eeeecc-cCCCceEEEeeccccceeeec
Confidence 888886 556778899998777677888889999999987665 333333 345678899999999888877
Q ss_pred CC-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEE---eCCCeEEEeeCCCCccccCCCc
Q 041325 324 CD-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSG---SSDNTIRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 324 ~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~---~~dg~v~iwd~~~~~~~~~~~~ 397 (450)
.+ +.+.+|+....+.. .... ....+..+++. ++.++.+ ..++.|++||..++
T Consensus 177 ~~~~~~~~~~~~~~~~~-------------~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~-------- 234 (301)
T d1l0qa2 177 FDSMSISVIDTVTNSVI-------------DTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN-------- 234 (301)
T ss_dssp TTTTEEEEEETTTTEEE-------------EEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT--------
T ss_pred ccccccccccccceeee-------------eccc-ccCCcceeeccccccccccccccceeeeeeeeecCCC--------
Confidence 65 56677777655432 1222 22345566676 4444433 33578999999874
Q ss_pred eeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEE-EEcccCCcEEEEEeC
Q 041325 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV-YSGSLDCEIKIWQIR 450 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~i~iw~l~ 450 (450)
+.+..+..+ ..+.+++|+||++ +| ++++.|+.|++||++
T Consensus 235 ~~~~~~~~~-~~~~~va~spdg~-------------~l~va~~~~~~i~v~D~~ 274 (301)
T d1l0qa2 235 KITARIPVG-PDPAGIAVTPDGK-------------KVYVALSFCNTVSVIDTA 274 (301)
T ss_dssp EEEEEEECC-SSEEEEEECTTSS-------------EEEEEETTTTEEEEEETT
T ss_pred eEEEEEcCC-CCEEEEEEeCCCC-------------EEEEEECCCCeEEEEECC
Confidence 556666543 4679999999998 55 788899999999974
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=2.1e-23 Score=189.81 Aligned_cols=315 Identities=10% Similarity=0.021 Sum_probs=200.8
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
.+.........++++++++. .| ..+..++| ||++|++++.||.|++||+.+++......... ..+|.+
T Consensus 40 d~g~v~v~D~~t~~v~~~~~--~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~-------~~~~~~ 109 (432)
T d1qksa2 40 DAGQIALIDGSTYEIKTVLD--TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-------GSEARS 109 (432)
T ss_dssp TTTEEEEEETTTCCEEEEEE--CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-------CSEEEE
T ss_pred CCCEEEEEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec-------CCCCCC
Confidence 34556677788999999998 55 46999999 89999999999999999998876433311110 123444
Q ss_pred ceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
.+.+..|+||+ +++++.+++|++||..+++........... ....
T Consensus 110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~--------------------------------~~~~ 157 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMT--------------------------------YDEQ 157 (432)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEEC--------------------------------TTTC
T ss_pred eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCcc--------------------------------ccce
Confidence 55555666666 477888999999999988543322111000 0000
Q ss_pred eecCCCceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 206 WVHHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
...+......+.+++++..+ ++...++.|.+||..+++........+...+..++++|++..+++++..++.+.++|..
T Consensus 158 ~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~ 237 (432)
T d1qksa2 158 EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK 237 (432)
T ss_dssp CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred eccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecc
Confidence 11355567888999998876 45567899999999887755544434667789999999776566666677789999987
Q ss_pred chhhhccccc------------------------------------hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcE
Q 041325 285 RAALQVNKKH------------------------------------SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSI 328 (450)
Q Consensus 285 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i 328 (450)
..+....... ........+...+....++|++..+++++.+...
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~ 317 (432)
T d1qksa2 238 EGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ 317 (432)
T ss_dssp TTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCS
T ss_pred cceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCcc
Confidence 6542100000 0000011122233444444555455555555555
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE-EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA-VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~ 407 (450)
++|+..+ ...|.....+++ ++++.+++++.|+.+++|++.+. ..+..|.
T Consensus 318 ~lw~~~~-------------------~~~~~~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~-----------~~l~~~~ 367 (432)
T d1qksa2 318 YLYVDAT-------------------LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW-----------AGITEGQ 367 (432)
T ss_dssp EEEEECT-------------------TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH-----------HTCCSSC
T ss_pred ceeeccc-------------------CCCCCCeeeEEEEEechhhcccccCCceEecccccc-----------cccCCCC
Confidence 5554332 122222111222 67889999999999999998642 1223577
Q ss_pred cceEEEEEEecCCCCCCCCCCCCceEEEEEc-----ccCCcEEEEEeC
Q 041325 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG-----SLDCEIKIWQIR 450 (450)
Q Consensus 408 ~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~-----~~Dg~i~iw~l~ 450 (450)
..|.+++|+|||+ +++.+ ..||.|+|||-+
T Consensus 368 ~~v~~~~fS~DG~-------------~v~~S~~~~~~~~g~i~i~D~~ 402 (432)
T d1qksa2 368 PRVVQGEFNKDGT-------------EVWFSVWNGKDQESALVVVDDK 402 (432)
T ss_dssp CEEEEEEECTTSS-------------EEEEEEECCTTSCCEEEEEETT
T ss_pred CcEEEeEECCCCC-------------EEEEEEecCCCCCCcEEEEECC
Confidence 7899999999998 55333 257889999853
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=1.5e-23 Score=186.93 Aligned_cols=241 Identities=6% Similarity=0.021 Sum_probs=174.9
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCC--cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNG--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
+|...|++++| ||++|++++.+. .|++||.++++... +..|...|.+++|+|+. |++++.+
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-------------~~~~~~~v~~~~~spdg~~l~~~~~~ 106 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-------------FEENLGNVFAMGVDRNGKFAVVANDR 106 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-------------CCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-------------eeCCCceEEeeeecccccccceeccc
Confidence 79999999999 899998776553 79999999887543 35788999999999887 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.+++|++++... ...+..|...+.+++|+|+|++|+
T Consensus 107 ~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~spdg~~la 143 (360)
T d1k32a3 107 FEIMTVDLETGKP-------------------------------------------TVIERSREAMITDFTISDNSRFIA 143 (360)
T ss_dssp SEEEEEETTTCCE-------------------------------------------EEEEECSSSCCCCEEECTTSCEEE
T ss_pred cccccccccccce-------------------------------------------eeeeecccccccchhhccceeeee
Confidence 9999999988732 122335777889999999999998
Q ss_pred EEe----------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc--
Q 041325 227 STS----------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH-- 294 (450)
Q Consensus 227 ~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-- 294 (450)
.+. .++.+++||+.+++...... +...+..+.|+|++. .|++++.++.+++||............
T Consensus 144 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~-~l~~~s~~~~~~~~d~~~~~~~~~~~~~~ 220 (360)
T d1k32a3 144 YGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFDADSK-NLYYLSYRSLDPSPDRVVLNFSFEVVSKP 220 (360)
T ss_dssp EEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEEECTTSC-EEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred eeccccccceeeccccceeeeccccCceeeecc--cccccccccccCCCC-EEEEEeCCCceEcccccccceeeccccce
Confidence 653 34579999999887765554 667888999998544 888999999999998644321100000
Q ss_pred ---------------------------------hhhhhHhhcccceEEEEEcCCC-------------CEEEEeeCCCcE
Q 041325 295 ---------------------------------SLVQTLEKHKSAVTALALSTDG-------------TVLYSGACDRSI 328 (450)
Q Consensus 295 ---------------------------------~~~~~~~~~~~~i~~l~~~~~~-------------~~l~~g~~dg~i 328 (450)
..+..+.........+...+++ .++++++.++.|
T Consensus 221 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 300 (360)
T d1k32a3 221 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 300 (360)
T ss_dssp EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEE
T ss_pred EEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEE
Confidence 0000000111222333333322 245566678899
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~ 389 (450)
++||+.+++. ..|...|.+++|+++ +|++++.||.|++||++++
T Consensus 301 ~~~d~~~~~~-----------------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~ 346 (360)
T d1k32a3 301 LKYDVKTRKV-----------------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346 (360)
T ss_dssp EEEETTTCCE-----------------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EEEECCCCeE-----------------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence 9999987642 234556889999855 9999999999999999975
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=2.1e-22 Score=183.15 Aligned_cols=196 Identities=11% Similarity=0.089 Sum_probs=145.3
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
-++++.+.||+|.|||.++++++.. +..| ..+..++|+||+ +++++.||+|++||+.+++..
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~--- 96 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT--- 96 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCce---
Confidence 3458899999999999999998877 4444 369999999987 889999999999999877421
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEE-EEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~ 242 (450)
....++ ...+|.+.+.+..|+|||++| ++++.++.|++||..++
T Consensus 97 -----------~~~~i~------------------------~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~ 141 (432)
T d1qksa2 97 -----------TVAEIK------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141 (432)
T ss_dssp -----------EEEEEE------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred -----------EEEEEe------------------------cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccc
Confidence 111111 011344556667788999976 67888999999999999
Q ss_pred eEEEEeec----------ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 243 RCLESVKN----------AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 243 ~~~~~~~~----------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
+.+..+.. .+......+.+++++..++++...++.|.+||..+.+.. .+..+ .+...+..++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~------~~~~i-~~g~~~~~~~~ 214 (432)
T d1qksa2 142 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL------KTTEI-SAERFLHDGGL 214 (432)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE------EEEEE-ECCSSEEEEEE
T ss_pred cceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc------eEEEE-cccCccccceE
Confidence 98877651 233456678888877767788888999999998654410 11111 24566889999
Q ss_pred cCCCCEEEEeeC-CCcEEEEEcCCCcee
Q 041325 313 STDGTVLYSGAC-DRSILVWERDQGNYI 339 (450)
Q Consensus 313 ~~~~~~l~~g~~-dg~i~vwd~~~~~~~ 339 (450)
+|+|+++++++. ++.+.++|..+++.+
T Consensus 215 spdg~~~~va~~~~~~v~v~d~~~~~~~ 242 (432)
T d1qksa2 215 DGSHRYFITAANARNKLVVIDTKEGKLV 242 (432)
T ss_dssp CTTSCEEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCCCCEEEEeccccceEEEeecccceEE
Confidence 999998877765 557889999887665
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.89 E-value=2.5e-21 Score=176.37 Aligned_cols=341 Identities=8% Similarity=-0.009 Sum_probs=216.7
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
...........+++++.++. +|. .+..++| ||++|++++.||+|++||+.+++......... ..+|..
T Consensus 40 ~dg~v~vwD~~t~~~~~~l~--~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~-------~~~~~~ 109 (426)
T d1hzua2 40 DAGQIALVDGDSKKIVKVID--TGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-------GIEARS 109 (426)
T ss_dssp TTTEEEEEETTTCSEEEEEE--CCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-------CSEEEE
T ss_pred CCCEEEEEECCCCcEEEEEe--CCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC-------CCCCcc
Confidence 34556667788899999998 664 5899999 89999999999999999999988654422111 124555
Q ss_pred ceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeEEeccCcccc-------cceeeeeeccCCCcceeEeeecCceEEE
Q 041325 129 AVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAYYSTSGKLKN-------KYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 129 ~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
.+.+++|+||+ + +++..++.+++||................. ...............+.......+.+..
T Consensus 110 ~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~ 189 (426)
T d1hzua2 110 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 189 (426)
T ss_dssp EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 56667777766 4 555689999999999987654433221100 0000111111111111111111222222
Q ss_pred ee-----cceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCCCeEEEEeecc-cccceEEEEEeecCCcE--E
Q 041325 199 RR-----HKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSDFRCLESVKNA-HDDAINAIVVSKSNDGF--V 269 (450)
Q Consensus 199 ~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~--l 269 (450)
.. ........+...+..++++|++++++++. .+..+.+++..+++.+...... .........+.....+. .
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (426)
T d1hzua2 190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWS 269 (426)
T ss_dssp EECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred EEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEE
Confidence 11 11223456788899999999999877776 5667999999999988777522 22233444444434443 3
Q ss_pred EEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE-------eeCCCcEEEEEcCCCceeeeC
Q 041325 270 YTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS-------GACDRSILVWERDQGNYIVDG 342 (450)
Q Consensus 270 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-------g~~dg~i~vwd~~~~~~~~~~ 342 (450)
+....|+.+.+|+........ ..++....+.+|...+..++|+||+++|++ +..|++|+|||+.+++.....
T Consensus 270 ~~~~~d~~v~~~~~~~~~~~~-~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~ 348 (426)
T d1hzua2 270 TSHLGDGSISLIGTDPKNHPQ-YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQV 348 (426)
T ss_dssp EECTTTCEEEEEECCTTTCTT-TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEE
T ss_pred eccCCCceEEEeecccccccc-ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEE
Confidence 345568899999876543211 223455667788999999999999999995 556889999999987654211
Q ss_pred CCCCCceeeeccccCCccceEEEEEeCC--eE-EEE----eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 343 DDDSGHMVLKGALRGHTKAILCLAVVSN--LL-FSG----SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l-~s~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
.. ......+..|...|..++|+++ ++ +++ +.+|.|+|||.++. +....+.++. .+
T Consensus 349 ~~----~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~--------k~~~~i~~~~------~~ 410 (426)
T d1hzua2 349 LP----IAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL--------KLKAVVKDPR------LI 410 (426)
T ss_dssp EC----HHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT--------EEEEEECCTT------CC
T ss_pred ec----cchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC--------eEEEEECCCC------cc
Confidence 00 0000124456777999999865 44 443 46889999999984 6666676654 33
Q ss_pred EecCC
Q 041325 416 VVDSD 420 (450)
Q Consensus 416 ~~~~~ 420 (450)
+|+|+
T Consensus 411 tp~Gk 415 (426)
T d1hzua2 411 TPTGK 415 (426)
T ss_dssp SEEEE
T ss_pred CCCce
Confidence 56665
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=1.4e-21 Score=172.25 Aligned_cols=278 Identities=9% Similarity=0.068 Sum_probs=183.7
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeEE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
++|++++.|++|+|||+.+++.+.... ...+...+.+++|+||+ + ++++.++.|.+||+.+++...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~----------~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~- 70 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVIT----------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG- 70 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE----------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE-
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEE----------CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEE-
Confidence 589999999999999999998776622 12344567899999886 4 567789999999999884322
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe------------C
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------------W 230 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------~ 230 (450)
.+..... ..+...+..++|+|++++++++. .
T Consensus 71 ---------------~~~~~~~----------------------~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T d1pbyb_ 71 ---------------RIDLSTP----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp ---------------EEECCBT----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred ---------------EEecCCC----------------------cccccceeeEEEcCCCcEEEEeecCCcceeeecccc
Confidence 1111000 01222455789999999988776 3
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh---H-------
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT---L------- 300 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---~------- 300 (450)
+..+.+||..+++....+. ....+..++++|++. ++++++. .+.+||..+++............ .
T Consensus 114 ~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (337)
T d1pbyb_ 114 PTRVALYDAETLSRRKAFE--APRQITMLAWARDGS-KLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAV 188 (337)
T ss_dssp CCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSS-CEEEESS--SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCC
T ss_pred ccceeeccccCCeEEEecc--ccCCceEEEEcCCCC-EEEEEcC--CcceeeeecCcEEEEeecCCccccceecCCccee
Confidence 6789999999999888886 556788999998554 6666654 47789987654211100000000 0
Q ss_pred -----hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEE
Q 041325 301 -----EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSG 375 (450)
Q Consensus 301 -----~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 375 (450)
..+...........+...+..+..++.+.+|+..+++.. ......+...+..+.+.++.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 256 (337)
T d1pbyb_ 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA------------MREVRIMDVFYFSTAVNPAKTRAF 256 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE------------EEEEEECSSCEEEEEECTTSSEEE
T ss_pred eccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEE------------EEEecCCCcceEEEEecccceEEE
Confidence 000000111111222233333445667888988877543 123445666777778876522223
Q ss_pred eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 376 SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.++.|++||+.++ +.+..+. +...+.+++|+||++ +|++++.||.|++||++
T Consensus 257 ~~~~~i~v~d~~~~--------~~~~~~~-~~~~~~~~~~s~dG~-------------~l~v~~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 257 GAYNVLESFDLEKN--------ASIKRVP-LPHSYYSVNVSTDGS-------------TVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEESEEEEEETTTT--------EEEEEEE-CSSCCCEEEECTTSC-------------EEEEESBSSEEEEEETT
T ss_pred EccccEEEEECCCC--------cEEEEEc-CCCCEEEEEECCCCC-------------EEEEEeCCCcEEEEECC
Confidence 34689999999975 5555554 566789999999999 89999999999999974
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=9.5e-19 Score=151.22 Aligned_cols=251 Identities=17% Similarity=0.211 Sum_probs=183.0
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
........+++.++++.. ...+..++| ||++| ++++.++.|++||+.+++.+.. +..|. .+
T Consensus 13 ~v~v~D~~t~~~~~~i~~---g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~------------~~~~~-~~ 76 (301)
T d1l0qa2 13 NISVIDVTSNKVTATIPV---GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------------VPAGS-SP 76 (301)
T ss_dssp EEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------------EECSS-SE
T ss_pred EEEEEECCCCeEEEEEEC---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee------------eeccc-cc
Confidence 345556677889999873 345778889 78877 5677889999999999887665 33443 56
Q ss_pred EEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 131 KSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 131 ~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
..++|+++. ++++..++.+.+|+..+++. ...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~---------------------------- 112 (301)
T d1l0qa2 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV----------------AGTV---------------------------- 112 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEE----------------EEEE----------------------------
T ss_pred cccccccccccccccccccceeeeccccccee----------------eeec----------------------------
Confidence 889998776 56677788999999988732 2221
Q ss_pred cCCCceEEEEEccCCCEEEE-EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSLLYS-TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+.....++.++|++..++. +..++.+.+|+..+.+....+. +...+..+.++++...++++...++.+.+|+....
T Consensus 113 ~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (301)
T d1l0qa2 113 KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (301)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred cccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc--cCCCceEEEeeccccceeeecccccccccccccce
Confidence 24446788999999987754 4568889999999999888886 45668889999866655555566677778876544
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+ ..... .....+..++++++++.++.+.. ++.|++||+.+++.+ ..+.. ...+.
T Consensus 191 ~--------~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~-------------~~~~~-~~~~~ 247 (301)
T d1l0qa2 191 S--------VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-------------ARIPV-GPDPA 247 (301)
T ss_dssp E--------EEEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-------------EEEEC-CSSEE
T ss_pred e--------eeecc-cccCCcceeeccccccccccccccceeeeeeeeecCCCeEE-------------EEEcC-CCCEE
Confidence 3 22222 23456788999999998876643 468999999988755 22222 34578
Q ss_pred EEEEeCC--eE-EEEeCCCeEEEeeCCCC
Q 041325 364 CLAVVSN--LL-FSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 364 ~~~~~~~--~l-~s~~~dg~v~iwd~~~~ 389 (450)
+++|+++ +| ++++.|+.|++||++++
T Consensus 248 ~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 248 GIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 8999854 55 67888999999999875
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=4.4e-21 Score=169.56 Aligned_cols=271 Identities=10% Similarity=0.053 Sum_probs=174.5
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~ 160 (450)
++++|++++.|++|.+||+.+++.+.... ..|...+.+++|+||+ ++++..++.|++||+.+++..
T Consensus 7 ~~~~l~~~~~~~~v~v~D~~t~~~~~t~~-----------~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCV-----------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 75 (346)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEE-----------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcEEEEEcCCCEEEEEECCCCCEEEEEE-----------cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeee
Confidence 78999999999999999999998776511 2455678899999986 466678999999999988432
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-----------
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS----------- 229 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------- 229 (450)
. .+..... ...+...+..++|+|||+++++++
T Consensus 76 ~----------------~~~~~~~---------------------~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~ 118 (346)
T d1jmxb_ 76 F----------------HANLSSV---------------------PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118 (346)
T ss_dssp E----------------EEESCCS---------------------TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred e----------------eeccccc---------------------ccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence 2 1111000 001122456789999999988765
Q ss_pred -CCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 230 -WDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 230 -~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
.++.+.+||..+++....+.. .....+..+.+.+ ++.+++.+ +.+.+|++.+++. ...+..+ ...
T Consensus 119 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~-~~~ 185 (346)
T d1jmxb_ 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD--DGSLYVAG--PDIYKMDVKTGKY--------TVALPLR-NWN 185 (346)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT--TSCEEEES--SSEEEECTTTCCE--------EEEECST-TCC
T ss_pred cCcceEEEEecccceeeeEEEeeeccCceEEEEecC--CCEEEEeC--CcceEEEccCCCE--------EEEEecC-CCc
Confidence 467888999887765544431 1223455555553 33444443 4588898866542 1111111 111
Q ss_pred EEEEEcCC--------------------------CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 308 TALALSTD--------------------------GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 308 ~~l~~~~~--------------------------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
..+.++|+ ...++++..++.+.+||..++... ......|...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 253 (346)
T d1jmxb_ 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH------------TQEFADLTEL 253 (346)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE------------EEEEEECSSC
T ss_pred cceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceE------------EEEeecccce
Confidence 22222332 333444455566777777765432 2334456667
Q ss_pred eEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc
Q 041325 362 ILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 362 v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~ 439 (450)
+..+.+.++ +++... ++.|++||..++ +.+..+. +...+.+++|+||++ +|++++
T Consensus 254 ~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~--------~~~~~~~-~~~~~~~va~s~DG~-------------~l~v~~ 310 (346)
T d1jmxb_ 254 YFTGLRSPKDPNQIYGV-LNRLAKYDLKQR--------KLIKAAN-LDHTYYCVAFDKKGD-------------KLYLGG 310 (346)
T ss_dssp EEEEEECSSCTTEEEEE-ESEEEEEETTTT--------EEEEEEE-CSSCCCEEEECSSSS-------------CEEEES
T ss_pred eEEEEEeCCCCEEEEec-CCeEEEEECCCC--------cEEEEEc-CCCCEEEEEEcCCCC-------------EEEEEe
Confidence 777777643 555544 467999999874 5555554 445799999999999 899999
Q ss_pred cCCcEEEEEeC
Q 041325 440 LDCEIKIWQIR 450 (450)
Q Consensus 440 ~Dg~i~iw~l~ 450 (450)
.||.|++||++
T Consensus 311 ~d~~v~v~D~~ 321 (346)
T d1jmxb_ 311 TFNDLAVFNPD 321 (346)
T ss_dssp BSSEEEEEETT
T ss_pred CCCcEEEEECc
Confidence 99999999974
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=5.2e-18 Score=148.82 Aligned_cols=290 Identities=11% Similarity=0.159 Sum_probs=181.7
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE-EEeCCCeEEEEEcCCCceeEEe
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF-SAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~-s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.+++++.|++|++|+++....... .....|.+.+..|+|+||+ |+ ++..|+.|++|++........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~----------~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~- 74 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTL----------TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT- 74 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEE----------EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE-
T ss_pred EEEECCCCCcEEEEEEcCCCCeEE----------EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE-
Confidence 457888999999999876543322 1234678899999999997 64 455589999999986632100
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC-CCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW-DRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~ 242 (450)
......+...+..++|+|||++|++++. ++.|.+|+....
T Consensus 75 ---------------------------------------~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~ 115 (333)
T d1ri6a_ 75 ---------------------------------------FAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG 115 (333)
T ss_dssp ---------------------------------------EEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred ---------------------------------------EeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccc
Confidence 0001124445778999999999998875 678999988776
Q ss_pred eEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 243 RCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 243 ~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
....... ..+...+.++.++|++...+.....+..|.+|+.............. ...........++|++++.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~g~~p~~i~~~~~~~~~~~ 193 (333)
T d1ri6a_ 116 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAE--VTTVEGAGPRHMVFHPNEQYAYC 193 (333)
T ss_dssp EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--EECSTTCCEEEEEECTTSSEEEE
T ss_pred cceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeecee--eeeecCCCccEEEEeccceeEEe
Confidence 6544432 24566788999999777566666677789999976543111000000 11123345678999999988766
Q ss_pred ee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CC-eEEEEeCCCeEEEeeCCCCccccCCCc
Q 041325 322 GA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SN-LLFSGSSDNTIRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 322 g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~ 397 (450)
.. ..+...+|+........... ..................++++ ++ .++++..++.+.+|++... ...
T Consensus 194 ~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~-----~~~ 265 (333)
T d1ri6a_ 194 VNELNSSVDVWELKDPHGNIECV---QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED-----GSV 265 (333)
T ss_dssp EETTTTEEEEEESSCTTSCCEEE---EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-----SCC
T ss_pred eccccCceEEEeecccccceeee---eeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCC-----CCE
Confidence 54 45678888865432110000 0000000011122344555665 44 5556677889999998753 112
Q ss_pred eeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE-cccCCcEEEEEe
Q 041325 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS-GSLDCEIKIWQI 449 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s-~~~Dg~i~iw~l 449 (450)
........+...+.+++|+||++ +|++ +..++.|++|++
T Consensus 266 ~~~~~~~~~~~~p~~~a~spDGk-------------~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 266 LSKEGFQPTETQPRGFNVDHSGK-------------YLIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEEEEEEECSSSCCCEEECTTSS-------------EEEEECTTTCEEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEeCCCC-------------EEEEEECCCCeEEEEEE
Confidence 22333333455678899999999 6554 556789999975
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.80 E-value=9.8e-19 Score=153.66 Aligned_cols=260 Identities=8% Similarity=0.052 Sum_probs=174.6
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
+.........+.++++++....+...+.+++| ||+++ ++++.++.|++||+.+++.+........ ..+..
T Consensus 10 d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~-------~~~~~ 82 (337)
T d1pbyb_ 10 PDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-------EERVK 82 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-------TEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC-------ccccc
Confidence 34455667778899999997677778899999 78887 5677899999999999987766332221 11223
Q ss_pred ceEEEEEeCCe--EEEEe------------CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc
Q 041325 129 AVKSLVVLGDK--LFSAH------------QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN 194 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (450)
.+..++|+++. ++++. .++.+.+||..+.. ....+
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------------~~~~~--------------- 131 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS----------------RRKAF--------------- 131 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE----------------EEEEE---------------
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe----------------EEEec---------------
Confidence 45567888766 55554 45677778877762 22221
Q ss_pred eEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC--------
Q 041325 195 YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND-------- 266 (450)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------- 266 (450)
.+...+..++|+++|+++++++ +.+.+||..+++....+.. +. ......+.+...
T Consensus 132 -------------~~~~~~~~~~~s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 194 (337)
T d1pbyb_ 132 -------------EAPRQITMLAWARDGSKLYGLG--RDLHVMDPEAGTLVEDKPI-QS-WEAETYAQPDVLAVWNQHES 194 (337)
T ss_dssp -------------ECCSSCCCEEECTTSSCEEEES--SSEEEEETTTTEEEEEECS-TT-TTTTTBCCCBCCCCCCCCTT
T ss_pred -------------cccCCceEEEEcCCCCEEEEEc--CCcceeeeecCcEEEEeec-CC-ccccceecCCcceeeccccc
Confidence 2344678899999999999886 4578899999988877652 11 111111111110
Q ss_pred ---------------cEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 267 ---------------GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 267 ---------------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
.....+..++.+.+|+...+.. ....+..+...+..+.++|++.+++.+ ++.|++|
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~ 265 (337)
T d1pbyb_ 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-------AMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESF 265 (337)
T ss_dssp TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-------EEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred cceeeeeeeeeeeccceeeecccCccEEEEEcCCCcE-------EEEEecCCCcceEEEEecccceEEEEc--cccEEEE
Confidence 1112223345677787765541 112233456778889999999988766 5899999
Q ss_pred EcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCC
Q 041325 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 389 (450)
|+.+++.+. .+ .+...+.+++|+ +++|++++.|+.|++||..+.
T Consensus 266 d~~~~~~~~-------------~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~ 311 (337)
T d1pbyb_ 266 DLEKNASIK-------------RV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp ETTTTEEEE-------------EE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred ECCCCcEEE-------------EE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999987652 22 234567889997 459999999999999999974
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.78 E-value=1.2e-15 Score=135.87 Aligned_cols=310 Identities=9% Similarity=-0.047 Sum_probs=191.5
Q ss_pred CCCcceEEEEE--eCCEEEEe-----eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGG-----SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tg-----s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
++..++.++++ ||+.++.. +.++.|.+||..+++.+.. +..+.. ..++|+||+ |+++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~------------~~~~~~--~~~a~SpDG~~l~va 83 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH------------VNGGFL--PNPVAAHSGSEFALA 83 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE------------EeCCCC--ccEEEcCCCCEEEEE
Confidence 67888888888 88888764 2346799999999987765 223332 368888887 5554
Q ss_pred ----------eCCCeEEEEEcCCCceeEEeccCcccccc----eeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 144 ----------HQDHKIRVWKIDNNTSAYYSTSGKLKNKY----YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 144 ----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
..++.|.+||..+++.............. ...+...+............++...+..........+
T Consensus 84 ~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~ 163 (373)
T d2madh_ 84 STSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL 163 (373)
T ss_pred eecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE
Confidence 34688999999998765443322211100 0111222222222222333344444444444445566
Q ss_pred CCceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecc---cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 210 VDTVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNA---HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
.....++.++++++.+ ++.+.|+.+.+||...++........ ...........+..++.++..+.++.+.+|+...
T Consensus 164 ~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 164 LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA 243 (373)
T ss_pred eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCC
Confidence 6677889999988754 67889999999999988776655411 1112222233333566677788899999999876
Q ss_pred hhhhccccchhh----hhHhhcccceEEEEEcCCCCE----------EEEeeCCCcEEEEEcCCCceeeeCCCCCCceee
Q 041325 286 AALQVNKKHSLV----QTLEKHKSAVTALALSTDGTV----------LYSGACDRSILVWERDQGNYIVDGDDDSGHMVL 351 (450)
Q Consensus 286 ~~~~~~~~~~~~----~~~~~~~~~i~~l~~~~~~~~----------l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 351 (450)
............ ............+++++++.. ++....++.+.+||..+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~----------- 312 (373)
T d2madh_ 244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSS----------- 312 (373)
T ss_pred CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEE-----------
Confidence 542110000000 000001122344555555554 3455667789999999887552
Q ss_pred eccccCCccceEEEEEeCC----eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 352 KGALRGHTKAILCLAVVSN----LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
.+ .+...+.+++|+++ ++++++.|+.|++||+.++ +.+..+..+....+.|++.++
T Consensus 313 --~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg--------~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 313 --QI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG--------DQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred --Ee-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC--------CEEEEECCCCCCCcEEEEecC
Confidence 22 34566788888754 4578999999999999986 778888888887888876543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=5.6e-16 Score=136.99 Aligned_cols=285 Identities=9% Similarity=-0.023 Sum_probs=165.9
Q ss_pred EEeCCEEEEe-----eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE----------e
Q 041325 82 AIAGKLLYGG-----SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA----------H 144 (450)
Q Consensus 82 ~~d~~~l~tg-----s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~----------~ 144 (450)
+.|++.++.. ..++.|.+||..+++.+.. +..+ ....++|+||+ |+++ .
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~------------~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~ 75 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM------------IDGG--FLPNPVVADDGSFIAHASTVFSRIARGE 75 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE------------EEEC--SSCEEEECTTSSCEEEEEEEEEETTEEE
T ss_pred CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE------------EECC--CCCceEEcCCCCEEEEEeCCCccccccC
Confidence 3478887764 3456799999999987665 2233 33478999887 5543 4
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.|+.|++||..+++......... . ...........++|++++++
T Consensus 76 ~d~~v~v~D~~t~~~~~~~~~~~----------------~--------------------~~~~~~~~~~~~~~s~dg~~ 119 (355)
T d2bbkh_ 76 RTDYVEVFDPVTLLPTADIELPD----------------A--------------------PRFLVGTYPWMTSLTPDGKT 119 (355)
T ss_dssp EEEEEEEECTTTCCEEEEEEETT----------------C--------------------CCCCBSCCGGGEEECTTSSE
T ss_pred CCCEEEEEECCCCCEEEEEecCC----------------c--------------------ceeecCCCCceEEEecCCCe
Confidence 57899999999885422111100 0 00011223456889999998
Q ss_pred EEEEe--CCCcEEEEecCCCeEEEEeeccccc------ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 225 LYSTS--WDRTFKIWRTSDFRCLESVKNAHDD------AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 225 l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
++.+. .+..+.+||..+++.+..+...... ....+.++++...+++....++.+.+++.....
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~--------- 190 (355)
T d2bbkh_ 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH--------- 190 (355)
T ss_dssp EEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS---------
T ss_pred eEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc---------
Confidence 87765 4678999999999988877622111 112233333222222233333333333332211
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFS 374 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 374 (450)
..+...+....+.+++..++.++.++.+++|++..++......... .................++++ +..++.
T Consensus 191 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~d~~~~~~ 265 (355)
T d2bbkh_ 191 ----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA-LTEAERADGWRPGGWQQVAYHRALDRIYL 265 (355)
T ss_dssp ----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES-SCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC-cccceEeeeeeccceEEEEEeCCCCeEEE
Confidence 1233345556778888889999999999999998775432110000 000000000011112234444 444444
Q ss_pred EeCC----------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcE
Q 041325 375 GSSD----------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444 (450)
Q Consensus 375 ~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i 444 (450)
...+ +.|.+||..++ +.+..+. +...+.+++|+||++. .++++++.|+.|
T Consensus 266 ~~~~~~~~~~~~~~~~v~v~d~~t~--------~~~~~~~-~~~~~~~~a~spDG~~-----------~l~v~~~~d~~i 325 (355)
T d2bbkh_ 266 LVDQRDEWRHKTASRFVVVLDAKTG--------ERLAKFE-MGHEIDSINVSQDEKP-----------LLYALSTGDKTL 325 (355)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTC--------CEEEEEE-EEEEECEEEECCSSSC-----------EEEEEETTTTEE
T ss_pred EeccCCceeecCCCCeEEEEeCCCC--------cEEEEec-CCCCEEEEEEcCCCCe-----------EEEEEECCCCEE
Confidence 3332 46999999874 4455554 3456889999999872 145677889999
Q ss_pred EEEEeC
Q 041325 445 KIWQIR 450 (450)
Q Consensus 445 ~iw~l~ 450 (450)
++||++
T Consensus 326 ~v~D~~ 331 (355)
T d2bbkh_ 326 YIHDAE 331 (355)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999974
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.72 E-value=1.4e-16 Score=140.18 Aligned_cols=288 Identities=9% Similarity=0.021 Sum_probs=181.8
Q ss_pred CccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE-EEeeC
Q 041325 17 PKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL-YGGSS 93 (450)
Q Consensus 17 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l-~tgs~ 93 (450)
++|+|+...+.+....+.+ ..+...++++++++++ .|...+.+++| ||+++ ++++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v--------------------~v~D~~t~~~~~t~~~-~~~~~p~~l~~spDG~~l~v~~~~ 60 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNL--------------------HVVDVASDTVYKSCVM-PDKFGPGTAMMAPDNRTAYVLNNH 60 (346)
T ss_dssp CCCCTTCEEEEEEETTTEE--------------------EEEETTTTEEEEEEEC-SSCCSSCEEEECTTSSEEEEEETT
T ss_pred ccCCCCCcEEEEEcCCCEE--------------------EEEECCCCCEEEEEEc-CCCCCcceEEECCCCCEEEEEECC
Confidence 4566676666666555554 3455667788898874 45667889999 88887 55668
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe------------CCCeEEEEEcCCCce
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH------------QDHKIRVWKIDNNTS 159 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~------------~dg~i~iw~~~~~~~ 159 (450)
++.|++||+.+++............ .+...+..++|++|+ +++++ .++.+.+|+..+++.
T Consensus 61 ~~~v~~~d~~t~~~~~~~~~~~~~~------~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (346)
T d1jmxb_ 61 YGDIYGIDLDTCKNTFHANLSSVPG------EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 134 (346)
T ss_dssp TTEEEEEETTTTEEEEEEESCCSTT------EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred CCcEEEEeCccCeeeeeeccccccc------ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence 8999999999998776533221110 112245678888776 54443 466777777766521
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
. ..+ ........+..+.+++++.++++ ++.+.+|++
T Consensus 135 ~----------------~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 170 (346)
T d1jmxb_ 135 A----------------KPV-------------------------RTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDV 170 (346)
T ss_dssp B----------------CCS-------------------------EEEECCSSCCCEEECTTSCEEEE---SSSEEEECT
T ss_pred e----------------eEE-------------------------EeeeccCceEEEEecCCCEEEEe---CCcceEEEc
Confidence 1 000 00112334556667777776654 356899999
Q ss_pred CCCeEEEEeecccccceEEEEEeecCCc-------------------------EEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 240 SDFRCLESVKNAHDDAINAIVVSKSNDG-------------------------FVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
.+++.+..+. .......+.++|.... .+.++..++.+.+||..++..
T Consensus 171 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 242 (346)
T d1jmxb_ 171 KTGKYTVALP--LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKT------ 242 (346)
T ss_dssp TTCCEEEEEC--STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCE------
T ss_pred cCCCEEEEEe--cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCce------
Confidence 9988887765 1122223333332221 223334445567777655431
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l 372 (450)
.......+...+..+.+++++.+++.+. ++.|.+||..+++.+ ... .+...+.+++|++ ++|
T Consensus 243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~-------------~~~-~~~~~~~~va~s~DG~~l 306 (346)
T d1jmxb_ 243 -HTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLI-------------KAA-NLDHTYYCVAFDKKGDKL 306 (346)
T ss_dssp -EEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEE-------------EEE-ECSSCCCEEEECSSSSCE
T ss_pred -EEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEE-------------EEE-cCCCCEEEEEEcCCCCEE
Confidence 1223345667788899999888887766 467999999988755 222 1234578888874 599
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~ 407 (450)
++++.||.|++||.++. +.+..+..+.
T Consensus 307 ~v~~~d~~v~v~D~~t~--------~~i~~i~~p~ 333 (346)
T d1jmxb_ 307 YLGGTFNDLAVFNPDTL--------EKVKNIKLPG 333 (346)
T ss_dssp EEESBSSEEEEEETTTT--------EEEEEEECSS
T ss_pred EEEeCCCcEEEEECccC--------CEEEEEECCC
Confidence 99999999999999984 6666665443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.65 E-value=7.2e-14 Score=124.10 Aligned_cols=173 Identities=9% Similarity=-0.036 Sum_probs=100.2
Q ss_pred ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 255 AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 255 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
...++.++|++...+++.+.|+.+.+|+....+...... ..............+.+.+++.+ +..+.++.+.+|+..
T Consensus 166 ~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 242 (373)
T d2madh_ 166 SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV--GAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADIS 242 (373)
T ss_pred cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEe--eeccccCccceeeeEEECCCceE-EEecCCceEEEEEcC
Confidence 345677777777677888999999999987655211100 00011112223345566666544 455678999999988
Q ss_pred CCceeeeCCCC--CCceeeeccccC-------C-ccceEEEEE-eCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe
Q 041325 335 QGNYIVDGDDD--SGHMVLKGALRG-------H-TKAILCLAV-VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 335 ~~~~~~~~~~~--~~~~~~~~~~~~-------~-~~~v~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
........... ............ + ......... .+..+++...++.+.+||..++ +.+..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~--------~~~~~~ 314 (373)
T d2madh_ 243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG--------QTSSQI 314 (373)
T ss_pred CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC--------cEEEEe
Confidence 76543211110 000000000000 0 001111111 1336677788889999999875 455555
Q ss_pred cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 404 EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
. +...+..++|+||++. .++++++.|+.|++||++
T Consensus 315 ~-~~~~~~~~a~spDG~~-----------~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 315 S-LGHDVDAISVAQDGGP-----------DLYALSAGTEVLHIYDAG 349 (373)
T ss_pred c-CCCCeeEEEECCCCCE-----------EEEEEeCCCCeEEEEECC
Confidence 4 6677899999999872 134789999999999974
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=7.9e-14 Score=121.65 Aligned_cols=255 Identities=11% Similarity=0.171 Sum_probs=162.2
Q ss_pred CCCcceEEEEE--eCCEEEEee-CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe-CC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGS-SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH-QD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~-~d 146 (450)
.|.+.+..|+| ||++|++++ .|+.|++|++......... .....+...+..++|+|++ |++++ .+
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~---------~~~~~~~~~p~~l~~spDg~~l~v~~~~~ 104 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF---------AAESALPGSLTHISTDHQGQFVFVGSYNA 104 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE---------EEEEECSSCCSEEEECTTSSEEEEEETTT
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE---------eeecccCCCceEEEEcCCCCEEeecccCC
Confidence 68899999999 899886554 5899999998765533221 1122345567889999887 66666 47
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.|.+|+........ ......+...+.++.++|++++++
T Consensus 105 ~~v~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~v~~s~d~~~~~ 143 (333)
T d1ri6a_ 105 GNVSVTRLEDGLPVG-----------------------------------------VVDVVEGLDGCHSANISPDNRTLW 143 (333)
T ss_dssp TEEEEEEEETTEEEE-----------------------------------------EEEEECCCTTBCCCEECTTSSEEE
T ss_pred Cceeeecccccccee-----------------------------------------cccccCCCccceEEEeeecceeee
Confidence 789999988763211 111224566788899999999888
Q ss_pred EEeC-CCcEEEEecCCCeEEEE-----eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc--chhhh
Q 041325 227 STSW-DRTFKIWRTSDFRCLES-----VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK--HSLVQ 298 (450)
Q Consensus 227 ~~~~-dg~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~ 298 (450)
.++. +..|.+|+......... ...........++|++.....+.+....+...+|+........... .....
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 223 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeee
Confidence 8774 55799999876432221 1223445668899998666556677777888888865433111000 00001
Q ss_pred hHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEE
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSG 375 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 375 (450)
...........+++++++++++.. ..++.+.+|++....... .......+...+..++|+ +++|+++
T Consensus 224 ~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~p~~~a~spDGk~l~va 293 (333)
T d1ri6a_ 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL----------SKEGFQPTETQPRGFNVDHSGKYLIAA 293 (333)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE----------EEEEEEECSSSCCCEEECTTSSEEEEE
T ss_pred cCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE----------EEEEEeCCCCCeeEEEEeCCCCEEEEE
Confidence 111233456778999999876655 557789999987543221 111122233455677887 4466555
Q ss_pred -eCCCeEEEeeCC
Q 041325 376 -SSDNTIRIWRRS 387 (450)
Q Consensus 376 -~~dg~v~iwd~~ 387 (450)
..++.|++|++.
T Consensus 294 ~~~~~~v~v~~id 306 (333)
T d1ri6a_ 294 GQKSHHISVYEIV 306 (333)
T ss_dssp CTTTCEEEEEEEE
T ss_pred ECCCCeEEEEEEE
Confidence 557899999664
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=4.4e-13 Score=118.02 Aligned_cols=285 Identities=12% Similarity=0.040 Sum_probs=171.8
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE--eCCEEEEe----------eCCCcEEEecCCCCCceeeeecCCCCcceeEEec
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGG----------SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATG 125 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tg----------s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (450)
....+++++.++. .+..+ .++| ||++|++. +.||.|++||..+++............ ..
T Consensus 33 ~D~~tg~~~~~~~--~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~-----~~ 103 (355)
T d2bbkh_ 33 IDGEAGRVIGMID--GGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR-----FL 103 (355)
T ss_dssp EETTTTEEEEEEE--ECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-----CC
T ss_pred EECCCCcEEEEEE--CCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce-----ee
Confidence 3456778888887 55544 5666 89988764 347899999999998776633222111 11
Q ss_pred CCCceEEEEEeCCe--EEEE--eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 126 NGDAVKSLVVLGDK--LFSA--HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.......++|++++ ++.+ +.+..+.+|+..+++.. ..++......
T Consensus 104 ~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~--------------- 152 (355)
T d2bbkh_ 104 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK----------------RMLDVPDCYH--------------- 152 (355)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE----------------EEEECCSEEE---------------
T ss_pred cCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe----------------eEEecCCcce---------------
Confidence 22344567888776 4443 55778999999988432 2221110000
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEE-eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYST-SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.........+.+++++..++.. ..++.+.+++...... .+...+....+.+ .+..++.++.++.+++
T Consensus 153 -----~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v 220 (355)
T d2bbkh_ 153 -----IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP------EDEFLINHPAYSQ-KAGRLVWPTYTGKIHQ 220 (355)
T ss_dssp -----EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC------TTSCBCSCCEEET-TTTEEEEEBTTSEEEE
T ss_pred -----EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc------eecceeeeccccC-CCCeEEEecCCCeEEE
Confidence 0001133456677777665544 3345555555544322 2333445556665 4557888899999999
Q ss_pred EeCcchhhhccccc--hh--hhhHhhcccceEEEEEcCCCCEEEEeeCC----------CcEEEEEcCCCceeeeCCCCC
Q 041325 281 WKKLRAALQVNKKH--SL--VQTLEKHKSAVTALALSTDGTVLYSGACD----------RSILVWERDQGNYIVDGDDDS 346 (450)
Q Consensus 281 wd~~~~~~~~~~~~--~~--~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----------g~i~vwd~~~~~~~~~~~~~~ 346 (450)
|++..+........ .. .............+++++++..++....+ ..|.+||..+++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~------- 293 (355)
T d2bbkh_ 221 IDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL------- 293 (355)
T ss_dssp EECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE-------
T ss_pred EecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEE-------
Confidence 99877652211110 01 11111122344568899999988876543 36999999988755
Q ss_pred CceeeeccccCCccceEEEEEeCC----eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 347 GHMVLKGALRGHTKAILCLAVVSN----LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
..+. +...+.+++|+++ ++++++.|+.|++||.+++ +.+..+.++...-..+.+.
T Consensus 294 ------~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg--------~~~~~i~~~G~~p~~i~~~ 352 (355)
T d2bbkh_ 294 ------AKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG--------EELRSVNQLGHGPQVITTA 352 (355)
T ss_dssp ------EEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC--------CEEEEECCCCSSCCEEECC
T ss_pred ------EEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC--------CEEEEEeCcCCCccEEEeC
Confidence 2222 2345778888754 4567788999999999985 6777777665555555443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=4.2e-13 Score=118.87 Aligned_cols=281 Identities=9% Similarity=-0.056 Sum_probs=162.6
Q ss_pred eeCCCc--EEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE----------eCCCeEEEEEcCC
Q 041325 91 GSSNGE--IRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA----------HQDHKIRVWKIDN 156 (450)
Q Consensus 91 gs~dg~--v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~----------~~dg~i~iw~~~~ 156 (450)
...+|. |.+||..+++.... ..++..+ .++|++++ |++. ..|+.|.+||..+
T Consensus 40 ~~~~g~~~~~~~d~~~~~~~~~------------~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t 105 (368)
T d1mdah_ 40 AYFAGTTENWVSCAGCGVTLGH------------SLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp TTTCSSEEEEEEETTTTEEEEE------------EEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred ccCCCcceEEEEeCCCCcEEEE------------EeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCC
Confidence 444554 66668888876655 2333333 57888877 5543 3578899999998
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFK 235 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~ 235 (450)
.+.... ++..... ..........++|+|||++++++. .++.+.
T Consensus 106 ~~~~~~----------------i~~p~~~--------------------~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~ 149 (368)
T d1mdah_ 106 FLPIAD----------------IELPDAP--------------------RFSVGPRVHIIGNCASSACLLFFLFGSSAAA 149 (368)
T ss_dssp CCEEEE----------------EEETTSC--------------------SCCBSCCTTSEEECTTSSCEEEEECSSSCEE
T ss_pred CcEeee----------------ecCCccc--------------------eecccCCccceEECCCCCEEEEEeCCCCeEE
Confidence 854221 1100000 000111234689999999998776 579999
Q ss_pred EEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC
Q 041325 236 IWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD 315 (450)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 315 (450)
+||+.+++.+..+.. +.... +.+.....++..+.||.+.+++......... .........+...+....+.++
T Consensus 150 ~~d~~~~~~~~~~~~-~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 222 (368)
T d1mdah_ 150 GLSVPGASDDQLTKS-ASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAG--IVGAQCTGAQNCSSQAAQANYP 222 (368)
T ss_dssp EEEETTTEEEEEEEC-SSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCE--ECCCCSCTTSCBCSCCEEETTT
T ss_pred EEECCCCcEeEEeec-cCcce----EccCCCceEEEEcCCCCEEEEEecCCceeee--eeecccccccccceeecccccC
Confidence 999999999888762 22221 2233455778888899999998765441110 0011222334455566788888
Q ss_pred CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCce-eeeccccCCccceEEEEEeCCeEEEEeC---------CCeEEEee
Q 041325 316 GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM-VLKGALRGHTKAILCLAVVSNLLFSGSS---------DNTIRIWR 385 (450)
Q Consensus 316 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~---------dg~v~iwd 385 (450)
+..+.+. ++.+++++...++............ ...............+...++.++.... ...|.+||
T Consensus 223 g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D 300 (368)
T d1mdah_ 223 GMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT 300 (368)
T ss_dssp TEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred cEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence 7666544 5667777776654432111111000 0000011111122333334444433322 13588999
Q ss_pred CCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..++ +.+..+. +...+.+++|+||++. .+++++..|+.|++||.+
T Consensus 301 ~~t~--------~~~~~~~-~~~~~~~~a~spDG~~-----------~ly~s~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 301 ASVG--------QTSGPIS-NGHDSDAIIAAQDGAS-----------DNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp SSSC--------CEEECCE-EEEEECEEEECCSSSC-----------EEEEEETTTTEEEEEESS
T ss_pred CCCC--------cEeEEec-CCCceeEEEECCCCCE-----------EEEEEeCCCCeEEEEECC
Confidence 9875 4455444 3467889999999862 145777889999999963
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.45 E-value=1.5e-12 Score=114.62 Aligned_cols=288 Identities=11% Similarity=0.083 Sum_probs=162.6
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCc------------------ceeEEecCCCceEEEEEeCCe--E-EEEeCC
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDH------------------ANVVATGNGDAVKSLVVLGDK--L-FSAHQD 146 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~------------------~~~~~~~h~~~v~~l~~~~~~--l-~s~~~d 146 (450)
++||+.+|+|+||++.+++.+.......... .......|..........+|+ | ++...+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 6688899999999999998776643321110 000011233334444444555 4 555678
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC--E
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS--L 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~ 224 (450)
++|.++|+++.+... +..++ +...+..++|+|+++ +
T Consensus 94 ~rVavIDl~t~k~~~--------------ii~iP----------------------------~g~gphgi~~spdg~t~Y 131 (441)
T d1qnia2 94 TRVARIRLDIMKTDK--------------ITHIP----------------------------NVQAIHGLRLQKVPKTNY 131 (441)
T ss_dssp TEEEEEETTTTEEEE--------------EEECT----------------------------TCCCEEEEEECCSSBCCE
T ss_pred CEEEEEECCCCcEee--------------EEecC----------------------------CCCCccceEEeccCCEEE
Confidence 999999999984311 11121 344688899999887 4
Q ss_pred EEEEeCCC-----------------cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 225 LYSTSWDR-----------------TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 225 l~~~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
++..+.+. .+..+|..+.+...++. -......+.++|+++..++++.....+..++..+..
T Consensus 132 V~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~--v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~ 209 (441)
T d1qnia2 132 VFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI--VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRN 209 (441)
T ss_dssp EEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE--ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCS
T ss_pred EEeccCCcccccCcccccccccccceEEeecCccceeeEEEe--cCCCccceEECCCCCEEEEEecCCCceEEEeccCcc
Confidence 44444321 23558888888777775 345678899998666334443332222211111100
Q ss_pred hh--------------------------------ccccchhhhhHhhcccceEEEEEcCCCCEEE-EeeCCCcEEEEEcC
Q 041325 288 LQ--------------------------------VNKKHSLVQTLEKHKSAVTALALSTDGTVLY-SGACDRSILVWERD 334 (450)
Q Consensus 288 ~~--------------------------------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~g~~dg~i~vwd~~ 334 (450)
.. .......+..+... .....+.++|||++++ ++..+++|.|||+.
T Consensus 210 ~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 210 DRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp SBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred eEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 00 00001122222222 2356799999999875 56779999999998
Q ss_pred CCceeeeCCCCCCceeeeccccCCc---cceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccc--cCCCceeEEEe----
Q 041325 335 QGNYIVDGDDDSGHMVLKGALRGHT---KAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTD--HQKGYSCLAVL---- 403 (450)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~---- 403 (450)
+.+..+..... ....+.++. -.....+|+++ .+.+.+.|..|..|++...... .......+..+
T Consensus 289 k~~~~~~~~~~-----~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y 363 (441)
T d1qnia2 289 KLDDLFEDKIE-----LRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQY 363 (441)
T ss_dssp GHHHHTTTSSC-----GGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred hhhhHhhccCC-----cceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecccccc
Confidence 64322111110 111111111 12244567754 6778889999999998532110 01112233333
Q ss_pred -cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 404 -EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 404 -~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
.+|...+.+..++|||+ +|+++
T Consensus 364 ~~GH~~~~~~~t~~pdGk-------------~l~s~ 386 (441)
T d1qnia2 364 QPGHNHASLTESRDADGK-------------WLVVL 386 (441)
T ss_dssp CEEEEEETTTTSTTCCCC-------------EEEEE
T ss_pred CCCCCccccccccCCCCc-------------EEEec
Confidence 57777788888889988 88888
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.31 E-value=1.5e-10 Score=102.11 Aligned_cols=267 Identities=8% Similarity=-0.043 Sum_probs=146.4
Q ss_pred CCccceeeeEEeecCCCcceEEEEEeCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
....++.+.++. ++......++.||++|++.+ .|+.|++||..+++............ .....
T Consensus 52 d~~~~~~~~~~~--~~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~-----~~~g~ 124 (368)
T d1mdah_ 52 CAGCGVTLGHSL--GAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-----FSVGP 124 (368)
T ss_dssp ETTTTEEEEEEE--ECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-----CCBSC
T ss_pred eCCCCcEEEEEe--CCCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce-----ecccC
Confidence 456677888877 56555433333899888754 47789999999998776533211100 01112
Q ss_pred ceEEEEEeCCe--EEEEe-CCCeEEEEEcCCCceeEEeccCcccccc-ee-eeeeccCCCcceeEeeecCceEEEeecce
Q 041325 129 AVKSLVVLGDK--LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKY-YE-RIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
....++|++|+ ++.+. .++.+.+||+.+.+.............. .. ........+....................
T Consensus 125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~ 204 (368)
T d1mdah_ 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA 204 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCC
T ss_pred CccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeec
Confidence 33468899887 65554 6799999999998664433221110000 00 00000001111111111111111111111
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-----------ccccceEEEEEeecCCcEEEEE
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-----------AHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
..+..+...+....+.+++..+.+. ++.+.+++............ ........++++++...+++..
T Consensus 205 ~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~ 282 (368)
T d1mdah_ 205 QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILT 282 (368)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred ccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEe
Confidence 1222344455667777777655544 45666666655443322110 0112234577777555444433
Q ss_pred cCC--------CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-E-EEEeeCCCcEEEEEcCCCceeeeC
Q 041325 273 SAD--------TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-V-LYSGACDRSILVWERDQGNYIVDG 342 (450)
Q Consensus 273 ~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~-l~~g~~dg~i~vwd~~~~~~~~~~ 342 (450)
..+ ..|.+||..+++ .+..+. ....+..++|+|||+ + ++++..|+.|++||..+++.+..+
T Consensus 283 ~~~~~~~~~~~~~v~v~D~~t~~--------~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 283 VEHSRSCLAAAENTSSVTASVGQ--------TSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp EECSSCTTSCEEEEEEEESSSCC--------EEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEEC
T ss_pred cCCCceeecCCceEEEEECCCCc--------EeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence 222 358899987766 344433 446788999999997 3 456677899999999999877444
Q ss_pred C
Q 041325 343 D 343 (450)
Q Consensus 343 ~ 343 (450)
+
T Consensus 354 ~ 354 (368)
T d1mdah_ 354 E 354 (368)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.29 E-value=3.3e-10 Score=103.38 Aligned_cols=135 Identities=11% Similarity=0.088 Sum_probs=94.9
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe---------CCCeEEEE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH---------QDHKIRVW 152 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~---------~dg~i~iw 152 (450)
|+.++.. .||.+.+||+.+++......... +..|...|.++.|+||+ |+.++ .++.+.+|
T Consensus 27 d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 27 DHEYLYK--QENNILVFNAEYGNSSVFLENST-------FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp SSEEEEE--SSSCEEEEETTTCCEEEEECTTT-------TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEEEEE--cCCcEEEEECCCCCEEEEEchhh-------hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 5555553 47889999999998665533222 44677889999999998 66553 35678899
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
|+.+++. ..+..+.+.+....|+|||+.+|... ++
T Consensus 98 d~~~~~~--------------------------------------------~~l~~~~~~~~~~~~SPDG~~ia~~~-~~ 132 (470)
T d2bgra1 98 DLNKRQL--------------------------------------------ITEERIPNNTQWVTWSPVGHKLAYVW-NN 132 (470)
T ss_dssp ETTTTEE--------------------------------------------CCSSCCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred ECCCCcc--------------------------------------------cccccCCccccccccccCcceeeEee-cc
Confidence 9998732 11224777899999999999999865 77
Q ss_pred cEEEEecCCCeEEEEeecc-----------------cccceEEEEEeecCCcEEEEEc
Q 041325 233 TFKIWRTSDFRCLESVKNA-----------------HDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
.+.+|+..+++........ ..+....+.|+|++. .|+...
T Consensus 133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk-~ia~~~ 189 (470)
T d2bgra1 133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQ 189 (470)
T ss_dssp EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEE
T ss_pred cceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCC-ccceeE
Confidence 9999999988766544311 122345678999666 555443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.26 E-value=9.1e-12 Score=109.54 Aligned_cols=218 Identities=12% Similarity=0.062 Sum_probs=121.5
Q ss_pred CCCceEEEEEccCCCEEEEEe-CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE---------
Q 041325 209 HVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI--------- 278 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i--------- 278 (450)
|..........|||++|++.. .+++|.++|+.+++....+...+...+..++++|+++...+++..+..+
T Consensus 70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~ 149 (441)
T d1qnia2 70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDF 149 (441)
T ss_dssp CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCC
T ss_pred cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccc
Confidence 444556666789999986664 6889999999999988877656778899999998666544444333333
Q ss_pred ---------EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-cE--------------EEEEcC
Q 041325 279 ---------KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-SI--------------LVWERD 334 (450)
Q Consensus 279 ---------~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-~i--------------~vwd~~ 334 (450)
..+|..+.+ ...... -......+.++|+|+++++.+.+. .+ .+.+..
T Consensus 150 ~~~~~~~~~~~iD~~t~~--------v~~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p 220 (441)
T d1qnia2 150 SLDNSYTMFTAIDAETMD--------VAWQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE 220 (441)
T ss_dssp CGGGEEEEEEEEETTTCS--------EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHH
T ss_pred ccccccceEEeecCccce--------eeEEEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCcc
Confidence 234443322 111111 224567899999999998887653 12 222211
Q ss_pred -------CCceeeeCCCCC------CceeeeccccCCccceEEEEEe--CCe-EEEEeCCCeEEEeeCCCCccccCCC--
Q 041325 335 -------QGNYIVDGDDDS------GHMVLKGALRGHTKAILCLAVV--SNL-LFSGSSDNTIRIWRRSSSVTDHQKG-- 396 (450)
Q Consensus 335 -------~~~~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~~--~~~-l~s~~~dg~v~iwd~~~~~~~~~~~-- 396 (450)
.++......... ........+..... ...+.++ +++ ++++..+++|.+||+.+........
T Consensus 221 ~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~ 299 (441)
T d1qnia2 221 RIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIE 299 (441)
T ss_dssp HHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSC
T ss_pred ceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCC
Confidence 011110000000 00001111122222 2345555 444 5677889999999987532110000
Q ss_pred -ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 397 -YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 397 -~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..++.......-.....+|.+++. .+.+...|..|..|++
T Consensus 300 ~~~~~~~~~~~glgplh~~fd~~g~-------------~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 300 LRDTIVAEPELGLGPLHTTFDGRGN-------------AYTTLFIDSQVCKWNI 340 (441)
T ss_dssp GGGGEEECCBCCSCEEEEEECSSSE-------------EEEEETTTTEEEEEEH
T ss_pred cceEEEeecccccCcccceecCCce-------------EEEcccccceEEEecc
Confidence 111111111111234456666665 8899999999999986
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.25 E-value=1e-10 Score=106.83 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=58.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeC---------CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSS---------NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.|...|.++.| ||++|+.++. ++.+.|||+.+++... +..|...+....|+||+
T Consensus 59 ~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~-------------l~~~~~~~~~~~~SPDG~~ 125 (470)
T d2bgra1 59 EFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-------------EERIPNNTQWVTWSPVGHK 125 (470)
T ss_dssp TSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------SSCCCTTEEEEEECSSTTC
T ss_pred hccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccc-------------cccCCccccccccccCcce
Confidence 56688999999 8999998753 5788999999887443 35677889999999998
Q ss_pred EEEEeCCCeEEEEEcCCCce
Q 041325 140 LFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~ 159 (450)
++. ..++.+.+|+..++..
T Consensus 126 ia~-~~~~~l~~~~~~~g~~ 144 (470)
T d2bgra1 126 LAY-VWNNDIYVKIEPNLPS 144 (470)
T ss_dssp EEE-EETTEEEEESSTTSCC
T ss_pred eeE-eecccceEEECCCCce
Confidence 554 5678999999988854
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.03 E-value=3.2e-07 Score=77.68 Aligned_cols=208 Identities=12% Similarity=0.090 Sum_probs=138.6
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+.+.++- -...+..+++ ||+++++...+++|+.|+...... . +......+.+++|.+++
T Consensus 18 ~~v~~~~p---~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~-~-------------~~~~~~~~~gla~~~dG~ 80 (302)
T d2p4oa1 18 AKIITSFP---VNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-I-------------HATVEGKVSGLAFTSNGD 80 (302)
T ss_dssp EEEEEEEC---TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-E-------------EEECSSEEEEEEECTTSC
T ss_pred ccEEEECC---CCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE-E-------------EEcCCCCcceEEEcCCCC
Confidence 34555553 2336888889 899999999999999998664321 1 23455688999999876
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++...++.+..|+........ ..+... ......+.+++
T Consensus 81 l~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~----------------------------~~~~~~n~i~~ 120 (302)
T d2p4oa1 81 LVATGWNADSIPVVSLVKSDGTV------------ETLLTL----------------------------PDAIFLNGITP 120 (302)
T ss_dssp EEEEEECTTSCEEEEEECTTSCE------------EEEEEC----------------------------TTCSCEEEEEE
T ss_pred eEEEecCCceEEEEEecccccce------------eecccc----------------------------CCccccceeEE
Confidence 5666677788888765542100 111111 13346788999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeec---------ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---------AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
.++++++++-+.++.+..+|...+........ ........+.+. ++.++++.+..+.|..++.......
T Consensus 121 ~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~ 198 (302)
T d2p4oa1 121 LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKP 198 (302)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCB
T ss_pred ccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccc
Confidence 99999988888889999999887764433321 111234566665 6667888888999998887654310
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
..............+++.++|++.++...++.|..++...
T Consensus 199 ------~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 199 ------GEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp ------CCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred ------cccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 0001111234456799999999888888899999998764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.93 E-value=4.2e-06 Score=71.09 Aligned_cols=234 Identities=10% Similarity=0.085 Sum_probs=135.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeC---C
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQ---D 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~---d 146 (450)
.....+..++| +|++.++-...|.|+.|+.+++..... ..........|++.+++ |+.+.. .
T Consensus 37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~------------~~~~~~~p~gla~~~dG~l~va~~~~~~ 104 (319)
T d2dg1a1 37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP------------FVSHKANPAAIKIHKDGRLFVCYLGDFK 104 (319)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE------------EECSSSSEEEEEECTTSCEEEEECTTSS
T ss_pred cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE------------EeCCCCCeeEEEECCCCCEEEEecCCCc
Confidence 44455678899 588888877889999999887764443 23344567889998776 444432 1
Q ss_pred CeEEEE--EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 147 HKIRVW--KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 147 g~i~iw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
....++ +........ .... ..-....+.+++.++|++
T Consensus 105 ~~~~i~~~~~~~~~~~~----------------~~~~-------------------------~~~~~~~nd~~~d~~G~l 143 (319)
T d2dg1a1 105 STGGIFAATENGDNLQD----------------IIED-------------------------LSTAYCIDDMVFDSKGGF 143 (319)
T ss_dssp SCCEEEEECTTSCSCEE----------------EECS-------------------------SSSCCCEEEEEECTTSCE
T ss_pred cceeEEEEcCCCceeee----------------eccC-------------------------CCcccCCcceeEEeccce
Confidence 223333 333321100 0000 001224678999999987
Q ss_pred EEEEeC------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 225 LYSTSW------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 225 l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
.++... .+.+..++.... .+..+. ..-...+.++|+++++.+.++-+..+.|..|++...............
T Consensus 144 ~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~-~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~ 221 (319)
T d2dg1a1 144 YFTDFRGYSTNPLGGVYYVSPDFR-TVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 221 (319)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSC-CEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE
T ss_pred eecccccccccCcceeEEEecccc-eeEEEe-eccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceee
Confidence 665432 233555555433 333332 233456889999876656777788899999987543210000000000
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
...........|++.++|++.++....+.|.+||. .++.+..... .....++...++++++.+
T Consensus 222 ~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~-------P~~~~~~~~~~~~~~~~~ 284 (319)
T d2dg1a1 222 YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI-------PGRDEGHMLRSTHPQFIP 284 (319)
T ss_dssp EECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC-------TTGGGTCSCBCCEEEECT
T ss_pred eccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC-------CCcCCCcCceeeeEEEeC
Confidence 11111223568999999998888888999999995 5765522111 111224455678888874
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.92 E-value=2.9e-06 Score=70.63 Aligned_cols=239 Identities=10% Similarity=0.179 Sum_probs=144.7
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--e-EE-EEeCCCeEE
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--K-LF-SAHQDHKIR 150 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~-l~-s~~~dg~i~ 150 (450)
.-..|++ +|+++++-..++.|++||.+ ++.+......... .+.......+++..+ . ++ ..+.++.|.
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~ 96 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKR------DSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 96 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSS------TTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCC------cccccccccccccccccccceeccCCccccc
Confidence 4678888 68888887778899999966 4444332111100 011112344444432 2 22 233445666
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
.++...... ..+. .........+++.+++.++++...
T Consensus 97 ~~~~~g~~~-----------------~~~~--------------------------~~~~~~p~~~avd~~G~i~v~~~~ 133 (279)
T d1q7fa_ 97 IYNQYGQFV-----------------RKFG--------------------------ATILQHPRGVTVDNKGRIIVVECK 133 (279)
T ss_dssp EECTTSCEE-----------------EEEC--------------------------TTTCSCEEEEEECTTSCEEEEETT
T ss_pred cccccccce-----------------eecC--------------------------CCcccccceeccccCCcEEEEeec
Confidence 665543311 0000 013345778999999998888887
Q ss_pred CCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccce
Q 041325 231 DRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAV 307 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i 307 (450)
.+.+.+++.. ++.+..+. ..+......+++.+ ...++++....+.|++||..... +..+ .+.....
T Consensus 134 ~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~~~~V~~~d~~G~~---------~~~~g~~g~~~~P 202 (279)
T d1q7fa_ 134 VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNRAHCVKVFNYEGQY---------LRQIGGEGITNYP 202 (279)
T ss_dssp TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGGGTEEEEEETTCCE---------EEEESCTTTSCSE
T ss_pred cceeeEeccC-Cceeecccccccccccceeeecc-ceeEEeeeccccceeeeecCCce---------eeeecccccccCC
Confidence 8889998865 55566553 23456677888876 34577788888999999964322 1111 2234557
Q ss_pred EEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEee
Q 041325 308 TALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWR 385 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd 385 (450)
..|++.++|+++++-.. ++.|.+|+. +++.+..+ ...........+++.++ .|+.++.++.|++|.
T Consensus 203 ~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~-----------~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr 270 (279)
T d1q7fa_ 203 IGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL-----------ESKVKHAQCFDVALMDDGSVVLASKDYRLYIYR 270 (279)
T ss_dssp EEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEE-----------EESSCCSCEEEEEEETTTEEEEEETTTEEEEEE
T ss_pred cccccccCCeEEEEECCCCcEEEEECC-CCCEEEEE-----------eCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEE
Confidence 88999999997777544 456999984 45543111 11112234567777755 566667899999999
Q ss_pred CCC
Q 041325 386 RSS 388 (450)
Q Consensus 386 ~~~ 388 (450)
...
T Consensus 271 ~~~ 273 (279)
T d1q7fa_ 271 YVQ 273 (279)
T ss_dssp CSC
T ss_pred eee
Confidence 875
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.89 E-value=1.1e-06 Score=73.74 Aligned_cols=223 Identities=11% Similarity=0.056 Sum_probs=138.8
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
+.+..+=-..+.|.-||.++++.... .....+.++++.+++ |+.++.+ -|..+|..+++.....
T Consensus 30 ~~l~wvDi~~~~I~r~d~~~g~~~~~--------------~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 30 GTAWWFNILERELHELHLASGRKTVH--------------ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHA 94 (295)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEE--------------ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEE
T ss_pred CEEEEEECCCCEEEEEECCCCeEEEE--------------ECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeEEe
Confidence 45555555668888888887764322 223467788887555 7777765 4888998887432111
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC----CCcEEEEec
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW----DRTFKIWRT 239 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~ 239 (450)
..... .....++.+.+.++|++.++... .+.-.+|.+
T Consensus 95 --------------~~~~~-------------------------~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 95 --------------ELESD-------------------------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp --------------CSSTT-------------------------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred --------------eeecC-------------------------CCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence 11100 01225788899999987666432 234567777
Q ss_pred CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEE
Q 041325 240 SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
..++...... .....+.++++++.+.++++-+..+.|..|++..................+.......+++..+|++.
T Consensus 136 ~~g~~~~~~~--~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlW 213 (295)
T d2ghsa1 136 AKGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIW 213 (295)
T ss_dssp ETTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEE
T ss_pred cCCcEEEEee--ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEE
Confidence 6776554443 34456889999877767888888999999987543211111111111222344567889999999988
Q ss_pred EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC----eEEEEeC
Q 041325 320 YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN----LLFSGSS 377 (450)
Q Consensus 320 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~s~~~ 377 (450)
++.-..+.|..||. +++.+ ..+.--...+++++|.|. +++|...
T Consensus 214 va~~~~g~V~~~dp-~G~~~-------------~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 214 NARWGEGAVDRYDT-DGNHI-------------ARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EEEETTTEEEEECT-TCCEE-------------EEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred eeeeCCCceEEecC-CCcEe-------------eEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 88777889999995 46544 222222346899999742 4555443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.89 E-value=8.2e-07 Score=75.07 Aligned_cols=228 Identities=14% Similarity=0.037 Sum_probs=136.8
Q ss_pred CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
..+..+++.+|+ +++...+++|..|+.+.... .
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~---------------------------------------------~ 62 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ---------------------------------------------I 62 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE---------------------------------------------E
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE---------------------------------------------E
Confidence 368889999887 66666688888887654411 1
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
+......+.+++|+++|+++++...++.+..|+.... ..............+.+++.++ ..++++.+.++.+..+|.
T Consensus 63 ~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~-g~~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 63 HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDV 141 (302)
T ss_dssp EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEET
T ss_pred EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccC-CCEEeeccccccceeeec
Confidence 1124457899999999999999888888888876532 2222222234566788888873 446777778888888887
Q ss_pred cchhhhccccchhh--hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 284 LRAALQVNKKHSLV--QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 284 ~~~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
..+........... ............+.+.. +.++++.+..+.|..++........ . .........
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~----------~-~~~~~~~~~ 209 (302)
T d2p4oa1 142 VQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPG----------E-PEIFVEQTN 209 (302)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBC----------C-CEEEEESCC
T ss_pred cCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEecccccccccc----------c-cccccCCCC
Confidence 65431111000001 11112223456666653 3455666778889888877543220 0 000011222
Q ss_pred eEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE---EecCC
Q 041325 362 ILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA---VVDSD 420 (450)
Q Consensus 362 v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~~ 420 (450)
...++++ +++.++...++.|..++.... ...+..........++++| .+|++
T Consensus 210 pdgia~d~dG~l~va~~~~~~V~~i~p~G~-------~~~~~~~~~~~~~pt~vafg~~~~D~~ 266 (302)
T d2p4oa1 210 IDDFAFDVEGNLYGATHIYNSVVRIAPDRS-------TTIIAQAEQGVIGSTAVAFGQTEGDCT 266 (302)
T ss_dssp CSSEEEBTTCCEEEECBTTCCEEEECTTCC-------EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred CcceEECCCCCEEEEEcCCCcEEEECCCCC-------EEEEEecCCCCCCceEEEEcCCCCCCC
Confidence 3456676 557777777888988876632 2233333444456889999 44555
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.89 E-value=4e-07 Score=75.20 Aligned_cols=191 Identities=10% Similarity=0.068 Sum_probs=121.5
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
....++++++++++++....+.+++++-.+...+.... .......+++.+.+ .++++-..+..+..++......
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~--~~~~p~~iavd~~g-~i~v~d~~~~~~~~~~~~~~~~--- 131 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD--GLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQ--- 131 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC--SCCSEEEEEECTTC-CEEEEEGGGTEEEEECTTCSSC---
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee--eeeecccccccccc-eeEeecccccccccccccccee---
Confidence 35678899999988887777777777666555443332 34567889998743 4666666666677777544321
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--C
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--S 369 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 369 (450)
..... ........++++++++++++...++.|..++....... ......-.....++++ +
T Consensus 132 ----~~~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-------------~~~~~~~~~p~gi~~d~~g 193 (260)
T d1rwia_ 132 ----TVLPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-------------VLPFTDITAPWGIAVDEAG 193 (260)
T ss_dssp ----EECCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-------------ECCCSSCCSEEEEEECTTC
T ss_pred ----eeeee-cccCCcceeeecCCCCEeeeccccccccccccccceee-------------eeeccccCCCccceeeeee
Confidence 01111 11234578999999998888888899999998754322 1111223345678886 4
Q ss_pred CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe-cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL-EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+++++....+.|..++.... ....+ ...-.....|++.+++. ++++-..++.|+..+
T Consensus 194 ~l~vsd~~~~~i~~~~~~~~---------~~~~~~~~~~~~P~~i~~d~~g~-------------l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 194 TVYVTEHNTNQVVKLLAGST---------TSTVLPFTGLNTPLAVAVDSDRT-------------VYVADRGNDRVVKLT 251 (260)
T ss_dssp CEEEEETTTTEEEEECTTCS---------CCEECCCCSCCCEEEEEECTTCC-------------EEEEEGGGTEEEEEC
T ss_pred eeeeeecCCCEEEEEeCCCC---------eEEEEccCCCCCeEEEEEeCCCC-------------EEEEECCCCEEEEEe
Confidence 47677777888888876542 11111 22234567899999888 777766777666543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.88 E-value=5.1e-07 Score=74.52 Aligned_cols=154 Identities=11% Similarity=0.057 Sum_probs=97.7
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
....++++.++++++++-..+..+..++........ ...........+++.+. ..++++...++.|..+|.....
T Consensus 98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~-g~~~v~~~~~~~i~~~d~~~~~--- 172 (260)
T d1rwia_ 98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEAESNN--- 172 (260)
T ss_dssp CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECTT-CCEEEEEGGGTEEEEECTTTCC---
T ss_pred eecccccccccceeEeeccccccccccccccceeee-eeecccCCcceeeecCC-CCEeeeccccccccccccccce---
Confidence 356889999999988877667778888776543222 22123345678899874 4477777888889999876433
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS- 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 369 (450)
..............|++.++|+++++....+.|..++........ .....-.....|++++
T Consensus 173 -----~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~-------------~~~~~~~~P~~i~~d~~ 234 (260)
T d1rwia_ 173 -----QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-------------LPFTGLNTPLAVAVDSD 234 (260)
T ss_dssp -----EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE-------------CCCCSCCCEEEEEECTT
T ss_pred -----eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE-------------EccCCCCCeEEEEEeCC
Confidence 111111233456889999999988888888889888766432110 0111123446777764
Q ss_pred -CeEEEEeCCCeEEEeeCC
Q 041325 370 -NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 370 -~~l~s~~~dg~v~iwd~~ 387 (450)
+++++-..+++|+.++..
T Consensus 235 g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 235 RTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp CCEEEEEGGGTEEEEECCC
T ss_pred CCEEEEECCCCEEEEEeCC
Confidence 465665666666655543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.88 E-value=1.8e-06 Score=75.00 Aligned_cols=180 Identities=11% Similarity=0.081 Sum_probs=96.1
Q ss_pred ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEE
Q 041325 253 DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVW 331 (450)
Q Consensus 253 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vw 331 (450)
...+.++.|+|++..++++......|.+|+....... ........ .........++|+|+++++++.. .++.|.+|
T Consensus 144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~--~~~~~~~~-~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~ 220 (365)
T d1jofa_ 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV--ELVGSVDA-PDPGDHPRWVAMHPTGNYLYALMEAGNRICEY 220 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCE--EEEEEEEC-SSTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCce--eeccceee-cCCCCceEEEEECCCCceEEEeccCCCEEEEE
Confidence 3457899999977655666566678888876432200 00000111 12345678999999999886655 57899999
Q ss_pred EcCCCceeeeCCC------CCCceeeeccccCCccceEEEEEe--CCeEEEEeC------CCeEEEeeCCCCccccCCCc
Q 041325 332 ERDQGNYIVDGDD------DSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSS------DNTIRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 332 d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~------dg~v~iwd~~~~~~~~~~~~ 397 (450)
++..++....... .............+......+.++ +++|+++.. .+.|..|++..... ....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~--~~~~ 298 (365)
T d1jofa_ 221 VIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGS--IEKQ 298 (365)
T ss_dssp EECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC--EEEE
T ss_pred EecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCc--eeeE
Confidence 9876543210000 000000000111222334556666 456665532 22366777654210 0000
Q ss_pred eeEEEecCCCcceEEEEEEe-cCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 398 SCLAVLEGHRRPVKCLTAVV-DSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..+............++++| ++++ ++++...++.|.+|++
T Consensus 299 ~~~~~~~~~G~~p~~i~~~p~~G~~------------l~va~~~s~~v~v~~~ 339 (365)
T d1jofa_ 299 LFLSPTPTSGGHSNAVSPCPWSDEW------------MAITDDQEGWLEIYRW 339 (365)
T ss_dssp EEEEECSSCCTTCCCEEECTTCTTE------------EEEECSSSCEEEEEEE
T ss_pred eEeeEEEcCCCCccEEEecCCCCCE------------EEEEeCCCCeEEEEEE
Confidence 11111122334557788987 6772 4455568899999986
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.83 E-value=2.7e-06 Score=72.09 Aligned_cols=200 Identities=9% Similarity=0.048 Sum_probs=116.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc---ccceEEEEEeecCCcEEEEEcC--------------
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH---DDAINAIVVSKSNDGFVYTGSA-------------- 274 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~-------------- 274 (450)
....++|.++++.++++...+.|...|.............. ....+.+++.+++ .+.++-..
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G-~lyvtd~~~~~~~~~~~~~~~~ 150 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQE 150 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSS
T ss_pred cceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCC-CEEEecCccCcccccccceecc
Confidence 35789999999988888877788889987554322221111 1235778888643 34444221
Q ss_pred -CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-----EEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 275 -DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-----VLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 275 -dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-----~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
.|.|..++... + ...+...-...+.++|+|+++ +.++-+..+.|..||+.....+. .
T Consensus 151 ~~G~v~~~~~dg-~---------~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~-------~ 213 (314)
T d1pjxa_ 151 KFGSIYCFTTDG-Q---------MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE-------N 213 (314)
T ss_dssp SCEEEEEECTTS-C---------EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE-------E
T ss_pred CCceEEEEeecC-c---------eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccc-------e
Confidence 22333333211 1 011111223346789998765 44555678889999876432220 0
Q ss_pred eeeeccccC-CccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCC
Q 041325 349 MVLKGALRG-HTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRN 425 (450)
Q Consensus 349 ~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 425 (450)
......+.. +....-.++++ +++.++....+.|.+||.+.+ .....+.......++++|.++++.
T Consensus 214 ~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g--------~~~~~i~~p~~~~t~~afg~d~~~---- 281 (314)
T d1pjxa_ 214 KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG--------QPKMRIRCPFEKPSNLHFKPQTKT---- 281 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB--------SCSEEEECSSSCEEEEEECTTSSE----
T ss_pred eeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC--------EEEEEEECCCCCEEEEEEeCCCCE----
Confidence 001111111 12234567776 566677777899999997753 334445555567889999988752
Q ss_pred CCCCCceEEEEEcccCCcEEEEEe
Q 041325 426 SDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 426 ~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++|.+.+|.|...++
T Consensus 282 --------lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 282 --------IFVTEHENNAVWKFEW 297 (314)
T ss_dssp --------EEEEETTTTEEEEEEC
T ss_pred --------EEEEECCCCcEEEEEC
Confidence 6677778888877665
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.78 E-value=1.3e-05 Score=67.74 Aligned_cols=247 Identities=14% Similarity=0.144 Sum_probs=145.7
Q ss_pred ceEEEEE--eCCEEEEeeC-------CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC
Q 041325 77 YIPSLAI--AGKLLYGGSS-------NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ 145 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 145 (450)
..-.++| +|+++++... +|+|..||..++......... .......-..++|.++. ++++..
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~--------~~~~~g~P~Gl~~~~dg~~l~vad~ 90 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPE--------VNGYGGIPAGCQCDRDANQLFVADM 90 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCE--------ETTEECCEEEEEECSSSSEEEEEET
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCc--------cccCCCcceeEEEeCCCCEEEEEEC
Confidence 3456677 6887776432 467999998887654431111 00111235678898664 777777
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEE
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL 225 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 225 (450)
.+.|...+.+........ ..... ..-...+.+++.++|++.
T Consensus 91 ~~~i~~~~~~g~~~~~~~---------------~~~~g------------------------~~~~~pndl~~d~~G~ly 131 (314)
T d1pjxa_ 91 RLGLLVVQTDGTFEEIAK---------------KDSEG------------------------RRMQGCNDCAFDYEGNLW 131 (314)
T ss_dssp TTEEEEEETTSCEEECCS---------------BCTTS------------------------CBCBCCCEEEECTTSCEE
T ss_pred CCeEEEEeCCCcEEEEEe---------------ccccc------------------------cccCCCcEEEECCCCCEE
Confidence 777888887765211000 00000 001135778899999877
Q ss_pred EEEeC---------------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc----EEEEEcCCCcEEEEeCcch
Q 041325 226 YSTSW---------------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG----FVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 226 ~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~l~~~~~dg~i~vwd~~~~ 286 (450)
++-.. +|.|..++.. ++...... .....+.++|+++.+. ++++-+..+.|..||+...
T Consensus 132 vtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~--~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~ 208 (314)
T d1pjxa_ 132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGP 208 (314)
T ss_dssp EEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEET
T ss_pred EecCccCcccccccceeccCCceEEEEeec-CceeEeeC--CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCc
Confidence 76421 2345444443 33333222 3344578999986542 5566678889999987543
Q ss_pred hhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 287 ALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
... ........+.. .......+++.++|++.++....+.|.+||...++.. ..+.......+++
T Consensus 209 g~~--~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~-------------~~i~~p~~~~t~~ 273 (314)
T d1pjxa_ 209 AKI--ENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-------------MRIRCPFEKPSNL 273 (314)
T ss_dssp TEE--EEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-------------EEEECSSSCEEEE
T ss_pred ccc--ceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEE-------------EEEECCCCCEEEE
Confidence 210 00001111111 1234568999999998888888899999998866532 2223334567889
Q ss_pred EEeCC---eEEEEeCCCeEEEeeCCC
Q 041325 366 AVVSN---LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 366 ~~~~~---~l~s~~~dg~v~iwd~~~ 388 (450)
+|.++ ++++.+.+|.|...++..
T Consensus 274 afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 274 HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEeCCCCEEEEEECCCCcEEEEECCC
Confidence 99754 667777889888888764
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.78 E-value=2.5e-06 Score=74.04 Aligned_cols=170 Identities=11% Similarity=0.070 Sum_probs=100.1
Q ss_pred ceEEEEEccCCCEEEEEeC-CCcEEEEecCCCe-EE--EEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 212 TVSALALSSDGSLLYSTSW-DRTFKIWRTSDFR-CL--ESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~--~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+.++.|+|+|+++++++. ...|.+|+..... .. .... .........++|+|++..+.++...++.|.+|++...
T Consensus 146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~ 225 (365)
T d1jofa_ 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA 225 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence 4789999999998888764 4578888765432 21 1221 1234578899999977756677888999999998665
Q ss_pred hhhcccc---chh--------hhhHhhcccceEEEEEcCCCCEEEEeeC------CCcEEEEEcCCCceeeeCCCCCCce
Q 041325 287 ALQVNKK---HSL--------VQTLEKHKSAVTALALSTDGTVLYSGAC------DRSILVWERDQGNYIVDGDDDSGHM 349 (450)
Q Consensus 287 ~~~~~~~---~~~--------~~~~~~~~~~i~~l~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~ 349 (450)
....... ... .............+.++|||++|+++.. .+.|..|++.....+. ..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~-------~~ 298 (365)
T d1jofa_ 226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE-------KQ 298 (365)
T ss_dssp TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE-------EE
T ss_pred CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCcee-------eE
Confidence 4110000 000 0011122334678899999999988743 2237777765432110 00
Q ss_pred eeeccccCCccceEEEEEe---CCeEE-EEeCCCeEEEeeCCC
Q 041325 350 VLKGALRGHTKAILCLAVV---SNLLF-SGSSDNTIRIWRRSS 388 (450)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~---~~~l~-s~~~dg~v~iwd~~~ 388 (450)
..............+++++ +++|+ +...++.|.+|+++.
T Consensus 299 ~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~ 341 (365)
T d1jofa_ 299 LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence 0111111122233556665 45555 446779999998764
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.76 E-value=5.6e-06 Score=68.41 Aligned_cols=176 Identities=14% Similarity=0.056 Sum_probs=100.8
Q ss_pred cCCCceEEEEEccCCCEEEEEeC-CCc--EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe--
Q 041325 208 HHVDTVSALALSSDGSLLYSTSW-DRT--FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK-- 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd-- 282 (450)
.+........|+|+|+.++.... ++. +..+........... ..........+.+.....+++...+|...+|.
T Consensus 80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred eeecccccceecCCCCeeeEeeecCCccceeecccccccceeee--eccccccccccccccccceecccccCCceEeeee
Confidence 45667788999999998887653 333 333333333332222 23344445566665665677777777555554
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.... ...............|+|+++.++..+.++ .+.+.+...+.. ....+.
T Consensus 158 ~~~~~---------~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~---------------~~~~~~ 213 (269)
T d2hqsa1 158 INGGA---------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---------------QVLSST 213 (269)
T ss_dssp TTSSC---------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---------------EECCCS
T ss_pred ccccc---------ceeeecccccccccccccccceeEEEeecCCceeeeEeecccccc---------------eEeecC
Confidence 33322 112223445667789999999888776544 344445444321 112233
Q ss_pred cceEEEEEeC--CeEEEEe-C--CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 360 KAILCLAVVS--NLLFSGS-S--DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~-~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
.......|++ +.|+-.+ . ...|+++++..+ ....+....+.+...+|+|-
T Consensus 214 ~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~---------~~~~lt~~~g~~~~p~WSP~ 268 (269)
T d2hqsa1 214 FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR---------FKARLPATDGQVKFPAWSPY 268 (269)
T ss_dssp SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---------CEEECCCSSSEEEEEEECCC
T ss_pred ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC---------CEEEEeCCCCcEEeEEeCCC
Confidence 4445566774 4554333 2 345788888753 34455556777888899883
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.63 E-value=5.4e-05 Score=62.66 Aligned_cols=191 Identities=12% Similarity=0.214 Sum_probs=119.3
Q ss_pred eEEEEEccC-CCEEEEE-eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 213 VSALALSSD-GSLLYST-SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~~-~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
...+++..+ +..+++. +.++.|..++. .++....+..........+++.+.+ .++++....+.+.+++.....
T Consensus 72 p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G-~i~v~~~~~~~~~~~~~~g~~--- 146 (279)
T d1q7fa_ 72 PNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGNV--- 146 (279)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE---
T ss_pred cccccccccccccceeccCCccccccccc-cccceeecCCCcccccceeccccCC-cEEEEeeccceeeEeccCCce---
Confidence 344555544 3334433 34557777776 4666666654555667888888633 366666777778888753321
Q ss_pred cccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 291 NKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 291 ~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
+..+ ..+......+++.++++++++....+.|++||.. ++.+... ...+.......|+++
T Consensus 147 ------~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~-----------g~~g~~~~P~giavD 208 (279)
T d1q7fa_ 147 ------LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQI-----------GGEGITNYPIGVGIN 208 (279)
T ss_dssp ------EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEE-----------SCTTTSCSEEEEEEC
T ss_pred ------eecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeee-----------cccccccCCcccccc
Confidence 1111 2345667889999999988888889999999975 4433211 112233445778886
Q ss_pred --CCeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEec--CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 369 --SNLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLE--GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 369 --~~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
++++++-. .++.|.+|+.. + +.+..+. ........|++.+++. +++ ++.++.
T Consensus 209 ~~G~i~Vad~~~~~~v~~f~~~-G--------~~~~~~~~~~~~~~p~~vav~~dG~-------------l~V-~~~n~~ 265 (279)
T d1q7fa_ 209 SNGEILIADNHNNFNLTIFTQD-G--------QLISALESKVKHAQCFDVALMDDGS-------------VVL-ASKDYR 265 (279)
T ss_dssp TTCCEEEEECSSSCEEEEECTT-S--------CEEEEEEESSCCSCEEEEEEETTTE-------------EEE-EETTTE
T ss_pred cCCeEEEEECCCCcEEEEECCC-C--------CEEEEEeCCCCCCCEeEEEEeCCCc-------------EEE-EeCCCe
Confidence 44555543 35579999854 2 3444442 2234578899999987 555 457899
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
|++|+.
T Consensus 266 v~~fr~ 271 (279)
T d1q7fa_ 266 LYIYRY 271 (279)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999975
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=3.1e-05 Score=63.69 Aligned_cols=225 Identities=10% Similarity=-0.067 Sum_probs=126.5
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCC---cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNG---EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.-.+.+. .+...+..-+| ||+.||-..... .+.+.+..++.... +..+.+......|+++
T Consensus 29 ~~~~~l~--~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~spd 93 (269)
T d2hqsa1 29 YNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------------VASFPRHNGAPAFSPD 93 (269)
T ss_dssp CSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-------------EECCSSCEEEEEECTT
T ss_pred CCcEEEe--cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE-------------EeeeecccccceecCC
Confidence 3444444 45677888888 899998664432 35555655555332 3456678888899987
Q ss_pred e--EEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 139 K--LFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 139 ~--l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
+ ++. ...++...++....... .. ............
T Consensus 94 g~~i~~~~~~~~~~~~~~~~~~~~--------------~~----------------------------~~~~~~~~~~~~ 131 (269)
T d2hqsa1 94 GSKLAFALSKTGSLNLYVMDLASG--------------QI----------------------------RQVTDGRSNNTE 131 (269)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTC--------------CE----------------------------EECCCCSSCEEE
T ss_pred CCeeeEeeecCCccceeecccccc--------------cc----------------------------eeeeeccccccc
Confidence 7 333 22333333333222210 00 000112223344
Q ss_pred EEEccCCCEEEEE-eCCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 216 LALSSDGSLLYST-SWDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 216 ~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
..+++++..++.. ..+| .|.+.++..+...... ..........|+|++..++......+...+|......
T Consensus 132 ~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~----- 204 (269)
T d2hqsa1 132 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT--WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT----- 204 (269)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC--CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT-----
T ss_pred cccccccccceecccccCCceEeeeecccccceeee--cccccccccccccccceeEEEeecCCceeeeEeeccc-----
Confidence 4566666554443 3444 4555566655433332 3556677788998777666666666666666554332
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
................|+|||+.|+..+. ...|+++++..+.. ..+....+.+...+|+|
T Consensus 205 ---~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~--------------~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 205 ---GGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK--------------ARLPATDGQVKFPAWSP 267 (269)
T ss_dssp ---CCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE--------------EECCCSSSEEEEEEECC
T ss_pred ---ccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE--------------EEEeCCCCcEEeEEeCC
Confidence 01111223455677899999999876554 34688999886543 23444455666777775
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.31 E-value=0.00019 Score=60.55 Aligned_cols=204 Identities=9% Similarity=0.042 Sum_probs=115.0
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC----CCcEEEEeCcc
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA----DTKIKVWKKLR 285 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~ 285 (450)
...+..++|.++|++.++-..++.|.-||...++....+. ........+++.+++. ++++... .+.+...+...
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCC
Confidence 3355789999999988777788999999988776555544 4556678999987443 4444332 23344444433
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC------CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC------DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
.... ..... .........+++.++|++.++... .+.+..++...+.. ..+...-
T Consensus 117 ~~~~-----~~~~~-~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~--------------~~~~~~~ 176 (319)
T d2dg1a1 117 DNLQ-----DIIED-LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--------------TPIIQNI 176 (319)
T ss_dssp CSCE-----EEECS-SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE--------------EEEEEEE
T ss_pred ceee-----eeccC-CCcccCCcceeEEeccceeecccccccccCcceeEEEeccccee--------------EEEeecc
Confidence 3210 00100 112244678999999986665432 12344444332211 0111112
Q ss_pred cceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 360 KAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 360 ~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
.....++|+++ +.++-+..+.|..|++..........................+++..++. +.+
T Consensus 177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-------------l~V 243 (319)
T d2dg1a1 177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-------------LYV 243 (319)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-------------EEE
T ss_pred ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-------------EEE
Confidence 23467888743 44666778899999886431100000011111111122356788888887 777
Q ss_pred EcccCCcEEEEE
Q 041325 437 SGSLDCEIKIWQ 448 (450)
Q Consensus 437 s~~~Dg~i~iw~ 448 (450)
+....+.|.+|+
T Consensus 244 a~~~~g~V~~~~ 255 (319)
T d2dg1a1 244 AMYGQGRVLVFN 255 (319)
T ss_dssp EEETTTEEEEEC
T ss_pred EEcCCCEEEEEC
Confidence 777788888775
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.15 E-value=0.0014 Score=54.34 Aligned_cols=184 Identities=14% Similarity=0.056 Sum_probs=107.2
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc---cccceEEEEEeecCCcEEEEEc----CCCcEEEEeC
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA---HDDAINAIVVSKSNDGFVYTGS----ADTKIKVWKK 283 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~----~dg~i~vwd~ 283 (450)
..+.++++.+++.++++ +.+ .|..+|..+++........ ....++.+.+.+.+. +.++.. ..+.-.+|.+
T Consensus 59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~-iw~~~~~~~~~~~~g~l~~~ 135 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHV 135 (295)
T ss_dssp SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEE
T ss_pred CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCC-EEEEeccccccccceeEeee
Confidence 36788999888876665 444 5889999988754433211 123578888886433 333322 1233455655
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE-eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS-GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
..++ .. .+...-.....++|+++++.++. -+..+.|..|++....... ...........+.....
T Consensus 136 ~~g~--------~~-~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~-----~~~~~~~~~~~~~~g~p 201 (295)
T d2ghsa1 136 AKGK--------VT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP-----TGKAEVFIDSTGIKGGM 201 (295)
T ss_dssp ETTE--------EE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB-----SSCCEEEEECTTSSSEE
T ss_pred cCCc--------EE-EEeeccCCcceeeecCCCceEEEeecccceeeEeeeccccccc-----ccceEEEeccCcccccc
Confidence 4433 11 11122344578999999986654 4557889999875322110 00011111222334455
Q ss_pred EEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE-ecCC
Q 041325 363 LCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV-VDSD 420 (450)
Q Consensus 363 ~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~ 420 (450)
-.++++ +++.++.-..+.|..||... +.+..+.-....+++++|- ++.+
T Consensus 202 dG~~vD~~GnlWva~~~~g~V~~~dp~G---------~~~~~i~lP~~~~T~~~FGG~d~~ 253 (295)
T d2ghsa1 202 DGSVCDAEGHIWNARWGEGAVDRYDTDG---------NHIARYEVPGKQTTCPAFIGPDAS 253 (295)
T ss_dssp EEEEECTTSCEEEEEETTTEEEEECTTC---------CEEEEEECSCSBEEEEEEESTTSC
T ss_pred cceEEcCCCCEEeeeeCCCceEEecCCC---------cEeeEecCCCCceEEEEEeCCCCC
Confidence 677776 45555555678899999653 5566666555679999996 4444
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=0.00057 Score=60.80 Aligned_cols=195 Identities=10% Similarity=0.061 Sum_probs=108.4
Q ss_pred eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE---------eCCCeEEEEEcCCCcee
Q 041325 92 SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA---------HQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 92 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~---------~~dg~i~iw~~~~~~~~ 160 (450)
..+|.|.+||+.+++......... ...-.+....++||+ ++.. +..+.+.++|+.++...
T Consensus 34 ~~~g~i~~~~~~~~~~~~l~~~~~---------~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~ 104 (465)
T d1xfda1 34 EQKGTVRLWNVETNTSTVLIEGKK---------IESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ 104 (465)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTT---------TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE
T ss_pred eCCCcEEEEECCCCCEEEEEcCcc---------ccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee
Confidence 456889999998877543322111 122356677788877 4433 33567888888877431
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
.. .... .....+....|+|||+.+|-.. ++.|.+.+..
T Consensus 105 ~l--------------~~~~---------------------------~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~ 142 (465)
T d1xfda1 105 SL--------------DPPE---------------------------VSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHV 142 (465)
T ss_dssp EC--------------CCTT---------------------------CCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSS
T ss_pred ec--------------cCcc---------------------------CCccccceeeeccCCceEEEEe-cceEEEEecC
Confidence 11 0000 1222455578999999988776 6788888887
Q ss_pred CCeEEEEeecccccc-----------------eEEEEEeecCCcEEEEEcCCCcEEEE----------------------
Q 041325 241 DFRCLESVKNAHDDA-----------------INAIVVSKSNDGFVYTGSADTKIKVW---------------------- 281 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~~l~~~~~dg~i~vw---------------------- 281 (450)
.+..++....+.... -..+-|+|++..+++.-..+..|..+
T Consensus 143 ~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G 222 (465)
T d1xfda1 143 GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAG 222 (465)
T ss_dssp SSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTT
T ss_pred CCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccC
Confidence 776555443222221 24677999766444443333434333
Q ss_pred -----------eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C---CcEEEEEcCCCcee
Q 041325 282 -----------KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D---RSILVWERDQGNYI 339 (450)
Q Consensus 282 -----------d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d---g~i~vwd~~~~~~~ 339 (450)
|+..+.... .............-+..+.|++++++++.... + ..|.++|..+++..
T Consensus 223 ~~np~~~l~v~d~~~~~~~~--~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~ 293 (465)
T d1xfda1 223 SENPSISLHVIGLNGPTHDL--EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT 293 (465)
T ss_dssp SCCCEEEEEEEESSSSCCCE--ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred CCCCceeEEEEecCCCcEEE--EEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEE
Confidence 332221000 00000111122334678899999886665432 2 35888898888654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.84 E-value=0.0041 Score=53.55 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=65.7
Q ss_pred eCCEEEEeeCCC-----------cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC-CeE
Q 041325 84 AGKLLYGGSSNG-----------EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD-HKI 149 (450)
Q Consensus 84 d~~~l~tgs~dg-----------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-g~i 149 (450)
+|+.++.|+.+. .+.+||..++.-...... ...|.......++.+++ ++.|+.+ ..+
T Consensus 30 ~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---------~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 30 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---------VTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---------ECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC---------CCCcccceeEEEEecCCcEEEeecCCCcce
Confidence 888888887531 377999988764332111 12333334455666666 5555444 579
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+||..+..- .....++ ....-...+..+||++++.|+
T Consensus 101 ~~yd~~~~~w--------------~~~~~~~----------------------------~~r~~~~~~~~~dG~v~v~GG 138 (387)
T d1k3ia3 101 SLYDSSSDSW--------------IPGPDMQ----------------------------VARGYQSSATMSDGRVFTIGG 138 (387)
T ss_dssp EEEEGGGTEE--------------EECCCCS----------------------------SCCSSCEEEECTTSCEEEECC
T ss_pred eEecCccCcc--------------ccccccc----------------------------ccccccceeeecCCceeeecc
Confidence 9999887632 1111111 111234566777899988887
Q ss_pred CC------CcEEEEecCCCeE
Q 041325 230 WD------RTFKIWRTSDFRC 244 (450)
Q Consensus 230 ~d------g~i~iwd~~~~~~ 244 (450)
.+ ..+.+||..+.+-
T Consensus 139 ~~~~~~~~~~v~~yd~~~~~W 159 (387)
T d1k3ia3 139 SWSGGVFEKNGEVYSPSSKTW 159 (387)
T ss_dssp CCCSSSCCCCEEEEETTTTEE
T ss_pred ccccccccceeeeecCCCCce
Confidence 43 3689999987653
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.77 E-value=0.0031 Score=51.42 Aligned_cols=98 Identities=8% Similarity=0.068 Sum_probs=62.2
Q ss_pred EEccC--CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-----cEEEEeCcchhhh
Q 041325 217 ALSSD--GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-----KIKVWKKLRAALQ 289 (450)
Q Consensus 217 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~ 289 (450)
..+|+ |+.++-.+ +|.|.+.|+..++... +. .+.+.+...+|+|+++.+.++...++ .|.+++...++..
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt-~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~ 81 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IV-SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK 81 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EE-CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEE-Ee-cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence 35687 88887765 5678888999887654 44 46677889999997775555543332 3666666555411
Q ss_pred ccccchhhhhH----hhcccceEEEEEcCCCCEEEEee
Q 041325 290 VNKKHSLVQTL----EKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 290 ~~~~~~~~~~~----~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.+... ...........|+|+|+.|+...
T Consensus 82 ------~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 82 ------RITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp ------ECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred ------EeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 11100 11123456788999999888753
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.70 E-value=0.013 Score=53.18 Aligned_cols=79 Identities=8% Similarity=0.039 Sum_probs=49.3
Q ss_pred eCCEEEEeeCCCcEEEecC-CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEE
Q 041325 84 AGKLLYGGSSNGEIRAWNR-DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+|.++++.+.++.|...|. ++++.+............. .......-..+++..+.++.++.||.+...|.++++....
T Consensus 62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~-~~~~~~~~rg~a~~~~~i~~~~~~g~l~alda~tG~~~w~ 140 (571)
T d2ad6a1 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKA-VMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG-GCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCccccc-ccccCcCCCcceeeCCeEEEEeCCCcEEeeehhhhhhhcc
Confidence 5555555555788988887 4688777643322111110 0011111234677788899999999999999999987554
Q ss_pred e
Q 041325 163 S 163 (450)
Q Consensus 163 ~ 163 (450)
.
T Consensus 141 ~ 141 (571)
T d2ad6a1 141 V 141 (571)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00041 Score=61.74 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=69.8
Q ss_pred ceEEEEEccCCCEEEEEe---------CCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 212 TVSALALSSDGSLLYSTS---------WDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
.+....|+||+++++... ..+.+.++|+.+++...... ......+....|+|++..+.++. ++.|.+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~ 139 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYC 139 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe--cceEEEE
Confidence 456778999999888764 35778999999876543322 12334566788999777544443 5668887
Q ss_pred eCcchhhh-ccccch----------hhhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEc
Q 041325 282 KKLRAALQ-VNKKHS----------LVQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWER 333 (450)
Q Consensus 282 d~~~~~~~-~~~~~~----------~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~ 333 (450)
+...+... ...... -+...+ ....-..+.|||||++|+.... +..|..+.+
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee-~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE-ILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHT-TSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhh-hccccceEEECCCCCeEEEEEecccccceeec
Confidence 76554311 000000 000000 1112256789999999998753 344555544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.52 E-value=0.015 Score=46.83 Aligned_cols=155 Identities=11% Similarity=0.034 Sum_probs=91.6
Q ss_pred ceEEEEEccCCCEEE-EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE--eCcchhh
Q 041325 212 TVSALALSSDGSLLY-STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW--KKLRAAL 288 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~ 288 (450)
.+.+++++.-+..|. +-...+.|.+.++........+. .....+..+++.|..+.++.+-...+..+++ ++....
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~-~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~- 157 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFD-TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN- 157 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEec-ccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-
Confidence 578899987555554 55567899999987654433333 3346788999998655445554333343454 433221
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
...+ ....-.....|++.+.++.|+.. ...+.|...++...... ....+-. ...++++
T Consensus 158 -----~~~i--~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~-------------~v~~~~~-~P~~lav 216 (263)
T d1npea_ 158 -----RRIL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRR-------------KVLEGLQ-YPFAVTS 216 (263)
T ss_dssp -----CEEE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEE-------------EEEECCC-SEEEEEE
T ss_pred -----ceee--eeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeE-------------EEECCCC-CcEEEEE
Confidence 0011 11123456889999877777655 45678988888754321 1111111 2357888
Q ss_pred eCCeEEEE-eCCCeEEEeeCCCC
Q 041325 368 VSNLLFSG-SSDNTIRIWRRSSS 389 (450)
Q Consensus 368 ~~~~l~s~-~~dg~v~iwd~~~~ 389 (450)
.++.|.-. ...+.|...|..++
T Consensus 217 ~~~~lYwtd~~~~~I~~~~~~~g 239 (263)
T d1npea_ 217 YGKNLYYTDWKTNSVIAMDLAIS 239 (263)
T ss_dssp ETTEEEEEETTTTEEEEEETTTT
T ss_pred ECCEEEEEECCCCEEEEEECCCC
Confidence 77755544 45677888887764
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.42 E-value=0.02 Score=45.92 Aligned_cols=201 Identities=10% Similarity=0.115 Sum_probs=122.4
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.+.-.+|..+.|+.-+ ..++.++|+++.+.++.+. ....|.--.|. .+..|+..+. ..|+-|+++... ...+-
T Consensus 66 dsAIMhP~~~IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWi--s~~~L~lVT~-taVYHW~~~g~s-~P~k~ 138 (327)
T d1utca2 66 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGES-QPVKM 138 (327)
T ss_dssp SEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEES--SSSEEEEECS-SEEEEEESSSSC-CCEEE
T ss_pred hhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEec--CCCEEEEEcC-CceEEEcccCCC-Cchhh
Confidence 3455788888877766 5689999999999999887 55677666776 5556555544 569999985422 11111
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEee-------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGA-------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
......+ ....|-.-..++++++++..+ -.|.+.+|..+.+. .+.+.+|...-..+.
T Consensus 139 fdR~~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~--------------sQ~ieGhaa~F~~~~ 202 (327)
T d1utca2 139 FDRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--------------SQPIEGHAASFAQFK 202 (327)
T ss_dssp EECCGGG--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--------------EEEECCSEEEEEEEC
T ss_pred hhhcccc--cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc--------------CccccceeeeeEEEE
Confidence 1111222 245677777888888876543 24678889887542 345566655444444
Q ss_pred EeCC-----eEEEE---eCCCeEEEeeCCCCcc-ccCCCceeEEEe---cCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 367 VVSN-----LLFSG---SSDNTIRIWRRSSSVT-DHQKGYSCLAVL---EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 367 ~~~~-----~l~s~---~~dg~v~iwd~~~~~~-~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
..++ +++-+ ...+.+.|.++..... ...-..+.+..+ ..-.+--.++..++... +
T Consensus 203 ~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg-------------i 269 (327)
T d1utca2 203 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------V 269 (327)
T ss_dssp CTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT-------------E
T ss_pred cCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC-------------E
Confidence 4332 22221 2336788988876422 111112222222 12233445677777766 7
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
+..-+.-|.|++||++
T Consensus 270 iyviTK~G~i~lyDle 285 (327)
T d1utca2 270 VFLITKYGYIHLYDLE 285 (327)
T ss_dssp EEEEETTSEEEEEETT
T ss_pred EEEEecCcEEEEEEcc
Confidence 8888899999999974
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.26 E-value=0.062 Score=48.45 Aligned_cols=79 Identities=10% Similarity=0.156 Sum_probs=49.1
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEec
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
+..|+.++.++.|.-.|.++++.+.............. ......-..++...+.++.+..|+.|...|..+++......
T Consensus 66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKART-SCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGG-CTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCcccccc-ccccccccCcceeCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 44555666779999999999998876432211110000 01111223445556778899999999999998887765443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.16 E-value=0.041 Score=44.30 Aligned_cols=64 Identities=6% Similarity=0.034 Sum_probs=42.8
Q ss_pred EEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE-eCCC-----eEEE
Q 041325 82 AIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA-HQDH-----KIRV 151 (450)
Q Consensus 82 ~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~-~~dg-----~i~i 151 (450)
+.| |+.+|-.+ +|.|.+.|+.+++... +..+.+.+...+|+||+ |+-. ..++ .|.+
T Consensus 7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-------------IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp EEEEETTEEEEEE-TTEEEEEETTTCCEEE-------------EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred CCCCCCCEEEEEe-CCcEEEEECCCCCEEE-------------EecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEE
Confidence 345 88887664 4678888999887544 34566778899999887 4433 2222 3667
Q ss_pred EEcCCCce
Q 041325 152 WKIDNNTS 159 (450)
Q Consensus 152 w~~~~~~~ 159 (450)
++...++.
T Consensus 73 ~~~~~g~~ 80 (281)
T d1k32a2 73 YNGENGEI 80 (281)
T ss_dssp EETTTTEE
T ss_pred EEecCCce
Confidence 77766654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.12 E-value=0.091 Score=47.52 Aligned_cols=78 Identities=8% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
+..|+.++.++.|.-.|.++++.+............. .......-..+.+..+.++.++.|+.+...|.++++.....
T Consensus 77 ~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGF-KGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGG-GSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCccccc-ccccccccccceEECCcEEEEecccceeeeccccccceecc
Confidence 4455666778999999999999877643222111100 00001112345566777888899999999999988775433
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.051 Score=43.62 Aligned_cols=159 Identities=17% Similarity=0.060 Sum_probs=94.2
Q ss_pred CceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE-cCCCcEEEEeCcchhh
Q 041325 211 DTVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG-SADTKIKVWKKLRAAL 288 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 288 (450)
..+..+++...+..| ++-...+.|.+.++........+. ........+++.|....++++. +..+.|.-.++....
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~-~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~- 154 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 154 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEc-CCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCc-
Confidence 356778888754444 444566789999998665544444 4456788999998555444443 233456555554322
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
........-.....+++.+.++.|+.+ ...+.|...++...... .............++++
T Consensus 155 -------~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~-----------~~~~~~~~~~~p~~lav 216 (266)
T d1ijqa1 155 -------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-----------TILEDEKRLAHPFSLAV 216 (266)
T ss_dssp -------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----------EEEECTTTTSSEEEEEE
T ss_pred -------eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-----------EEEeCCCcccccEEEEE
Confidence 111111223456889999877766665 45678888888654321 11111222234567888
Q ss_pred eCCeEEEE-eCCCeEEEeeCCCC
Q 041325 368 VSNLLFSG-SSDNTIRIWRRSSS 389 (450)
Q Consensus 368 ~~~~l~s~-~~dg~v~iwd~~~~ 389 (450)
.++.|.-. ..++.|...+..++
T Consensus 217 ~~~~ly~td~~~~~I~~~~~~~g 239 (266)
T d1ijqa1 217 FEDKVFWTDIINEAIFSANRLTG 239 (266)
T ss_dssp ETTEEEEEETTTTEEEEEETTTC
T ss_pred ECCEEEEEECCCCeEEEEECCCC
Confidence 87755544 46677877776654
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.72 E-value=0.13 Score=43.42 Aligned_cols=83 Identities=10% Similarity=0.105 Sum_probs=53.6
Q ss_pred ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh---hcccceEEEEEcCCCCEEEEeeCCCcEE
Q 041325 253 DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE---KHKSAVTALALSTDGTVLYSGACDRSIL 329 (450)
Q Consensus 253 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~g~~dg~i~ 329 (450)
......+.++|++..+++++..+..+.++|++.-............... ...-....-+|...|+-..+-.-|..|.
T Consensus 274 pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~ 353 (459)
T d1fwxa2 274 ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVV 353 (459)
T ss_dssp ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEE
Confidence 3456778999988877888888999999998754321111111111111 1123345678888886666667899999
Q ss_pred EEEcCC
Q 041325 330 VWERDQ 335 (450)
Q Consensus 330 vwd~~~ 335 (450)
-|++..
T Consensus 354 kw~~~~ 359 (459)
T d1fwxa2 354 KWNIED 359 (459)
T ss_dssp EEEHHH
T ss_pred EEecch
Confidence 999863
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.53 E-value=0.13 Score=40.95 Aligned_cols=201 Identities=12% Similarity=0.116 Sum_probs=115.5
Q ss_pred CCCcceEEEEEe--CC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCeEE-EEeCC
Q 041325 73 GNSSYIPSLAIA--GK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLF-SAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~d--~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~-s~~~d 146 (450)
.+...+.+|+|| .+ .+.+-..++.|+..+++....... .......+.+|++. .+.|+ +-...
T Consensus 33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v------------~~~~~~~p~~iAvD~~~~~lY~~d~~~ 100 (263)
T d1npea_ 33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI------------IRQDLGSPEGIALDHLGRTIFWTDSQL 100 (263)
T ss_dssp EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE------------ECTTCCCEEEEEEETTTTEEEEEETTT
T ss_pred cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE------------EEeccccccEEEEeccCCeEEEeccCC
Confidence 344567888884 44 444545667888888876654433 22223456777775 55554 44456
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.|.+.+++...... + ..........++++|...+++
T Consensus 101 ~~I~~~~~dg~~~~~--------------l-----------------------------~~~~l~~p~~l~vdp~~g~ly 137 (263)
T d1npea_ 101 DRIEVAKMDGTQRRV--------------L-----------------------------FDTGLVNPRGIVTDPVRGNLY 137 (263)
T ss_dssp TEEEEEETTSCSCEE--------------E-----------------------------ECSSCSSEEEEEEETTTTEEE
T ss_pred CEEEEEecCCceEEE--------------E-----------------------------ecccccCCcEEEEecccCcEE
Confidence 788888887652100 0 001223578889998666555
Q ss_pred EEeC-CCc--EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 227 STSW-DRT--FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 227 ~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
-... .+. |.--++.......... ..-.....+++.+..+.+.++-...+.|...|+..... ...+.+.
T Consensus 138 ~t~~~~~~~~I~r~~~dG~~~~~i~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~--------~~v~~~~ 208 (263)
T d1npea_ 138 WTDWNRDNPKIETSHMDGTNRRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR--------RKVLEGL 208 (263)
T ss_dssp EEECCSSSCEEEEEETTSCCCEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE--------EEEEECC
T ss_pred EeecCCCCcEEEEecCCCCCceeeee-ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe--------EEEECCC
Confidence 4432 223 4444554333222222 33456688999876665566667788999998865431 1111222
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.....|++. ++.+..+-...+.|...|..+++.+
T Consensus 209 -~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~ 242 (263)
T d1npea_ 209 -QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (263)
T ss_dssp -CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred -CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccc
Confidence 234577775 3334444446688999998877644
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.43 E-value=0.21 Score=42.20 Aligned_cols=125 Identities=9% Similarity=0.111 Sum_probs=69.0
Q ss_pred eEEEEEccCCCEEEEEeCC-CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------CcEEEEeCcc
Q 041325 213 VSALALSSDGSLLYSTSWD-RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKKLR 285 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~ 285 (450)
....++.+++.+++.|+.+ ..+.+||..+..-...-.......-...+..+ +..+++.|+.+ ..+.+||..+
T Consensus 78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred eeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCceeeeccccccccccceeeeecCCC
Confidence 3456788899999988755 58999999876654322211222233455554 33466666542 3688999877
Q ss_pred hhhhccccchhhhhHhh-c-----ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 286 AALQVNKKHSLVQTLEK-H-----KSAVTALALSTDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~-~-----~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
.+............... + ...-..+...++|+.+..+..++.+.+++..+...
T Consensus 157 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~ 215 (387)
T d1k3ia3 157 KTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV 215 (387)
T ss_dssp TEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE
T ss_pred CceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcE
Confidence 65321111000000000 0 01111233445778888887778788887776543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.25 E-value=0.27 Score=41.52 Aligned_cols=150 Identities=9% Similarity=0.081 Sum_probs=77.9
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC---------------cEEEEeCcchhhhc-------
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT---------------KIKVWKKLRAALQV------- 290 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------------~i~vwd~~~~~~~~------- 290 (450)
.+..+|..+.+....+. -......+.++++++ ++++.+.+. .+.+++....+...
T Consensus 174 ~~t~ID~~tm~V~~QV~--V~g~ld~~~~s~dGK-~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e 250 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVL--VSGNLDNCDADYEGK-WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 250 (459)
T ss_dssp EEEEEETTTTEEEEEEE--ESSCCCCEEECSSSS-EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred EEEEEecCCceEEEEee--eCCChhccccCCCCC-EEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence 46678888888777765 344566788888665 444433221 23344432211000
Q ss_pred c--------c---cchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 291 N--------K---KHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 291 ~--------~---~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
. . ....+..+ .-......+.++|||+++++++ .+.++.|+|++.-........+.... ...+.. .
T Consensus 251 ingV~VVD~~~~~~~~v~~yI-PVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~-~~~e~e-l 327 (459)
T d1fwxa2 251 LNGVKVVDGRKEASSLFTRYI-PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA-VVAEPE-L 327 (459)
T ss_dssp ETTEEEEECSGG--CSSEEEE-EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG-EEECCB-C
T ss_pred eCCceeecccccCCcceeEEE-ecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc-EEeecc-c
Confidence 0 0 00001011 1123356789999999987765 58899999997533221111000000 001111 1
Q ss_pred ccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 359 TKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 359 ~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
...-..-+|+++ -..|-.-|..|.-|++..
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecch
Confidence 122355667754 445556899999999864
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.23 E-value=0.21 Score=39.93 Aligned_cols=202 Identities=12% Similarity=0.156 Sum_probs=110.3
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
..+.||-=+ ..++.|+|+++.+.++... ...+|.--.|-.+. |+-.+ +..|+-|+++.....
T Consensus 73 ~~~IiALra-g~~LQiFnletK~klks~~-------------~~e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P-- 135 (327)
T d1utca2 73 ASKVIALKA-GKTLQIFNIEMKSKMKAHT-------------MTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQP-- 135 (327)
T ss_dssp SSSEEEEEE-TTEEEEEETTTTEEEEEEE-------------CSSCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCC--
T ss_pred CCcEEEEec-CCeEEEEehhHhhhhceEE-------------cCCCcEEEEecCCCEEEEEc-CCceEEEcccCCCCc--
Confidence 345555544 3589999999988666522 22477777776555 44444 457999999654210
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-------CCCcEE
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-------WDRTFK 235 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~ 235 (450)
.+.+.+...+ ....|..-..+++.++++..+ -.|.+.
T Consensus 136 -------~k~fdR~~~L-----------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQ 179 (327)
T d1utca2 136 -------VKMFDRHSSL-----------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 179 (327)
T ss_dssp -------EEEEECCGGG-----------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred -------hhhhhhcccc-----------------------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEE
Confidence 0000111111 122455555566666655433 136789
Q ss_pred EEecCCCeEEEEeecccccceEEEEEeec--CCcEEEE---EcCCCcEEEEeCcchhhh-ccccchhhhh---Hhhcccc
Q 041325 236 IWRTSDFRCLESVKNAHDDAINAIVVSKS--NDGFVYT---GSADTKIKVWKKLRAALQ-VNKKHSLVQT---LEKHKSA 306 (450)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~---~~~dg~i~vwd~~~~~~~-~~~~~~~~~~---~~~~~~~ 306 (450)
+|..+.+. -+.+. +|...-..+..... ...+++. +...+.+++.++...... ..-..+.... -+...+-
T Consensus 180 LYS~er~~-sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DF 257 (327)
T d1utca2 180 LYSVDRKV-SQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 257 (327)
T ss_dssp EEETTTTE-EEEEC-CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCC
T ss_pred EEEeccCc-Ccccc-ceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCc
Confidence 99987653 23333 44333333222100 0111211 223468899988663310 0000001111 1122344
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
..++..++.-..++.-+.-|.|++||+.++.+++
T Consensus 258 Pvamqvs~kygiiyviTK~G~i~lyDleTgt~i~ 291 (327)
T d1utca2 258 PVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 291 (327)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence 5678888888889999999999999999998873
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.22 E-value=0.41 Score=43.22 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=45.0
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeC------CCeEEEEEcCCCce
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQ------DHKIRVWKIDNNTS 159 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~------dg~i~iw~~~~~~~ 159 (450)
.+++.++.||.|.--|.++++............. ...-..-.+..+.++.+.. .|.|+-+|..+++.
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~-------~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~ 194 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVG-------STLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQ 194 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT-------CBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCE
T ss_pred eEEEEEeCCCCeEeeccccCceeccccccccccc-------cccccCCcEECCeEEEeeccccccccCceEEEECCCCcE
Confidence 4788899999999999999998776432110000 0011112234566666643 48999999999977
Q ss_pred eEE
Q 041325 160 AYY 162 (450)
Q Consensus 160 ~~~ 162 (450)
...
T Consensus 195 ~W~ 197 (596)
T d1w6sa_ 195 VWR 197 (596)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.90 E-value=0.57 Score=42.15 Aligned_cols=76 Identities=12% Similarity=0.167 Sum_probs=50.4
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
.+..|+.++.++.|.-.|.++++.+............ ......-..+++..+.++.++.|+.+...|.++++....
T Consensus 67 ~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~---~~~~~~~rg~a~~~~~i~~~t~~~~l~alda~tG~~~W~ 142 (582)
T d1flga_ 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR---PCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWK 142 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC---CSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEE
T ss_pred ECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccc---cccccccCCceEeCCceEEecCCCeEEEecccccceeee
Confidence 4556667788899999999999988764332211100 000111134566678888899999999999998876543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.86 E-value=0.6 Score=42.09 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=46.4
Q ss_pred EEEeCCEEEEeeCCCcEEEecC-CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC------eEEEEeCCCeEEEEE
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNR-DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD------KLFSAHQDHKIRVWK 153 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~l~s~~~dg~i~iw~ 153 (450)
+..+|.++++++.++.|...|. ++++.+............. .......-+.+++.++ .++.++.|+.|.-.|
T Consensus 59 iv~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~-~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Ald 137 (596)
T d1w6sa_ 59 LVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARA-VACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALN 137 (596)
T ss_dssp EEETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGG-GCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEE
T ss_pred EEECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCccccc-ccccccccceeEEecCCCCCceEEEEEeCCCCeEeec
Confidence 3446766666666778888886 5788776643222111000 0011111133454432 388899999999999
Q ss_pred cCCCceeE
Q 041325 154 IDNNTSAY 161 (450)
Q Consensus 154 ~~~~~~~~ 161 (450)
.++++...
T Consensus 138 a~tG~~~w 145 (596)
T d1w6sa_ 138 AETGETVW 145 (596)
T ss_dssp TTTCCEEE
T ss_pred cccCceec
Confidence 99996543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.10 E-value=0.35 Score=43.38 Aligned_cols=57 Identities=7% Similarity=0.075 Sum_probs=38.2
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
-.+.++++|+.||.++.+|.++|+.+-++.......-.-+.+..+++.++++....|
T Consensus 467 TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g 523 (560)
T d1kv9a2 467 TAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWG 523 (560)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred ECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCC
Confidence 356788889999999999999999998887433222222444444555655444333
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.85 E-value=0.84 Score=37.66 Aligned_cols=207 Identities=12% Similarity=0.099 Sum_probs=110.9
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEee----cCCc-EEEEEc-C-C--CcEEEEeCcchhhhc
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK----SNDG-FVYTGS-A-D--TKIKVWKKLRAALQV 290 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~-~l~~~~-~-d--g~i~vwd~~~~~~~~ 290 (450)
|+..+++...+++-|.+||+. |+.+..+. .+.++.|..-. .... .+++++ . + ..|.+|.+.......
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~---~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECC---SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEecc---cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 456677777788789999995 77777764 35666665542 1122 233333 2 2 357788764322100
Q ss_pred cccchhhhhHhhcccceEEEEE--cCC-CC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALAL--STD-GT-VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~--~~~-~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
................+..+|+ ++. |. ++++...+|.+..|.+...... .......+.+. -...+-.+.
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g------~v~~~lvr~f~-~~~q~EGCV 186 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNG------YISGKKVRAFK-MNSQTEGMA 186 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTS------SEEEEEEEEEE-CSSCEEEEE
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCC------ceeeEeeeccC-CCCccceEE
Confidence 0000000000011124566776 554 44 5666777899998877432100 00111222232 234577888
Q ss_pred EeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEec--CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCC
Q 041325 367 VVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE--GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442 (450)
Q Consensus 367 ~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 442 (450)
++.. .|+.+-.+..|..++..... ......+.... .....+..|+.-.... +++.+|+|.-.|+
T Consensus 187 vDde~~~LyisEE~~Giw~~~a~~~~---~~~~~~i~~~~g~~l~~D~EGlaiy~~~~---------~~GylivSsQG~n 254 (353)
T d1h6la_ 187 ADDEYGSLYIAEEDEAIWKFSAEPDG---GSNGTVIDRADGRHLTPDIEGLTIYYAAD---------GKGYLLASSQGNS 254 (353)
T ss_dssp EETTTTEEEEEETTTEEEEEESSTTS---CSCCEEEEECSSSSCCSCEEEEEEEECGG---------GCEEEEEEEGGGT
T ss_pred EeCCCCcEEEecCccceEEEEeccCC---CccceeeecccCccccCCccccEEEEcCC---------CCeEEEEEcCCCC
Confidence 8853 88888887766555554211 11122332322 2456788888765432 2345777777889
Q ss_pred cEEEEEe
Q 041325 443 EIKIWQI 449 (450)
Q Consensus 443 ~i~iw~l 449 (450)
+..+||.
T Consensus 255 ~f~vydr 261 (353)
T d1h6la_ 255 SYAIYER 261 (353)
T ss_dssp EEEEEES
T ss_pred eEEEEec
Confidence 9999985
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.22 E-value=0.57 Score=42.00 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
.+.++++|+.||.++.+|.++|+.+-++.......-.-+.+..+++.++++..
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMY 526 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEe
Confidence 46678889999999999999999999887443333333555555666665543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=1 Score=35.65 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=91.6
Q ss_pred CCceEEEEEccCCCEEEEEe-CCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 210 VDTVSALALSSDGSLLYSTS-WDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
...+.+++|++..+.+.-.. .++.|.-.++.... ....+.......+..+++.+..+++.++-...+.|.+.++..
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g 108 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence 33577899998766665554 55667666664321 112222133456778888876777777778888999999865
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.. ..............++++|...+|+... ..+.|...++...... ......-....
T Consensus 109 ~~--------~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~-------------~l~~~~~~~p~ 167 (266)
T d1ijqa1 109 VK--------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-------------SLVTENIQWPN 167 (266)
T ss_dssp SS--------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-------------EEECSSCSCEE
T ss_pred ce--------EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee-------------cccccccceee
Confidence 43 1111222335678899998666665543 3345666666543211 11111223456
Q ss_pred EEEEe--CC-eEEEEeCCCeEEEeeCCC
Q 041325 364 CLAVV--SN-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 364 ~~~~~--~~-~l~s~~~dg~v~iwd~~~ 388 (450)
+++++ .+ +.++-...+.|...++..
T Consensus 168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG 195 (266)
T d1ijqa1 168 GITLDLLSGRLYWVDSKLHSISSIDVNG 195 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEeeccccEEEEecCCcCEEEEEECCC
Confidence 77776 34 444446678888888864
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=93.45 E-value=0.9 Score=40.70 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=36.3
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
-.+.++++|+.||.++.+|.++|+.+.++.......-.-+.+..+++.+++...
T Consensus 486 tagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 486 TAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAV 539 (573)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEe
Confidence 357788889999999999999999998887432221122444444555554443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.22 E-value=0.96 Score=40.60 Aligned_cols=54 Identities=13% Similarity=0.203 Sum_probs=38.3
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
...+.++++|+.||.++.+|.++|+.+.+++......-.-+.+..+++.+++..
T Consensus 494 stagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence 345778888999999999999999999988744333333355555455565443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.93 E-value=2.4 Score=36.13 Aligned_cols=105 Identities=15% Similarity=0.147 Sum_probs=63.2
Q ss_pred ceEEEEEccCCCEEEEEe-----CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC------------
Q 041325 212 TVSALALSSDGSLLYSTS-----WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA------------ 274 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------------ 274 (450)
.+...+++|++++++.+- ..-.|+++|+.+++.+.... .......++|.+++..++.+.-.
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i--~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~ 203 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc--ccccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence 345667899999888542 23469999999998765332 12223568899866656555422
Q ss_pred ---CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 275 ---DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 275 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
...|..+.+.+.. .....+.........+..+..++++++++..
T Consensus 204 ~~~~~~v~~h~lgt~~----~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 204 TNLHQKLYYHVLGTDQ----SEDILCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp CCCCCEEEEEETTSCG----GGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred cCCcceEEEEECCCCc----cccccccccccCCceEEeeeccCCcceeeEE
Confidence 1256777765543 1111222222223346677889999987654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.77 E-value=2.9 Score=34.36 Aligned_cols=119 Identities=16% Similarity=0.255 Sum_probs=67.6
Q ss_pred ceEEEEE--cc-CCC-EEEEEeCCCcEEEEecC---CC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 212 TVSALAL--SS-DGS-LLYSTSWDRTFKIWRTS---DF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 212 ~v~~~~~--~~-~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.+..+|+ ++ ++. ++++...+|.+..|.+. .+ +.++.+. ....+..+.+.. ..+.|+.+-.+..|..
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EGCVvDd-e~~~LyisEE~~Giw~ 205 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEGMAADD-EYGSLYIAEEDEAIWK 205 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccceEEEeC-CCCcEEEecCccceEE
Confidence 3555555 55 354 45666788999888763 22 3444554 456788888886 4457888877766666
Q ss_pred EeCcchhhhccccchhhhhHh--hcccceEEEEEcC--C--CCEEEEeeCCCcEEEEEcCCC
Q 041325 281 WKKLRAALQVNKKHSLVQTLE--KHKSAVTALALST--D--GTVLYSGACDRSILVWERDQG 336 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~~--~--~~~l~~g~~dg~i~vwd~~~~ 336 (450)
++...... .....+.... .....+..|+.-. + |-+|++.-.+++..+||....
T Consensus 206 ~~a~~~~~---~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 206 FSAEPDGG---SNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EESSTTSC---SCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEeccCCC---ccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 65532210 1111111111 1345566666532 3 334444445788999998763
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.99 E-value=1.9 Score=37.05 Aligned_cols=55 Identities=5% Similarity=0.016 Sum_probs=39.1
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-------cccccceEEEEEeec
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-------NAHDDAINAIVVSKS 264 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~ 264 (450)
-...++|+|.|+++++++--.+|.|++++..+++...... .........|+++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 3467899999999988776557999999987765433221 112356788999874
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.61 E-value=4.8 Score=33.35 Aligned_cols=69 Identities=7% Similarity=0.080 Sum_probs=49.9
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCC
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~ 156 (450)
.|..++|+++.|+.... +.+..++......... ...-..++..+.+.+..++....+|.+.++++..
T Consensus 88 ~v~~vafs~d~l~v~~~-~~l~~~~~~~l~~~~~------------~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~ 154 (381)
T d1xipa_ 88 DVIFVCFHGDQVLVSTR-NALYSLDLEELSEFRT------------VTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRT 154 (381)
T ss_dssp TEEEEEEETTEEEEEES-SEEEEEESSSTTCEEE------------EEECSSCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred CeEEEEeeCCEEEEEeC-CCEEEEEeeccccccc------------cccccccccceecCCceeEEEecCCCEEEEEecc
Confidence 58899998888777654 5677777655432222 1122457888999999988888899999999988
Q ss_pred Cc
Q 041325 157 NT 158 (450)
Q Consensus 157 ~~ 158 (450)
..
T Consensus 155 ~~ 156 (381)
T d1xipa_ 155 KS 156 (381)
T ss_dssp CC
T ss_pred Cc
Confidence 74
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=89.16 E-value=4.1 Score=31.94 Aligned_cols=128 Identities=9% Similarity=0.070 Sum_probs=62.3
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.|+.+..|............ .....|..+.- ....++ ...++.+..|...... ...........|..
T Consensus 120 ~dg~v~~~g~~~~~~~~~~~-~~~~~v~~~~~---~~~~~~-~~~~g~~~~~G~~~~g--------~~~~~~~~~~~v~~ 186 (273)
T d1jtdb_ 120 KDGKVIAWGDDSDGQTTVPA-EAQSGVTALDG---GVYTAL-AVKNGGVIAWGDNYFG--------QTTVPAEAQSGVDD 186 (273)
T ss_dssp ETTEEEEEECCTTSTTSCCG-GGGSSEEEEEE---CSSEEE-EEETTEEEEEECCTTS--------TTSCCGGGSSSEEE
T ss_pred ccccceecccCCCCceeeec-cCCceEEEEec---cceeee-eecccceeEeecccCC--------cccccccccCCccc
Confidence 47888888754322211111 22334444433 222333 3347888888654322 11111123456777
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
|+... ...+.- .||.|+.|=....-.+ ... ......|..|+-...+.+.- .||.|..|-..
T Consensus 187 Is~G~--~h~~~l-~dG~v~~WG~n~~Gql----------~~~---~~~~~~v~~I~~G~~~~~~l-~~g~v~~WG~~ 247 (273)
T d1jtdb_ 187 VAGGI--FHSLAL-KDGKVIAWGDNRYKQT----------TVP---TEALSGVSAIASGEWYSLAL-KNGKVIAWGSS 247 (273)
T ss_dssp EEECS--SEEEEE-ETTEEEEEECCTTSTT----------CCC---GGGGSSCCEEEECSSCEEEE-ETTEEEEESTT
T ss_pred eeccc--eeeEEE-ecCcEEEcCCCCCCcc----------CCC---ccCCCCcEEEEeCcceEEEE-ECCEEEEECCC
Confidence 77643 233222 3899999965432111 000 11123466666554443333 48999999543
|
| >d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: Regulator of chromosome condensation RCC1 domain: Regulator of chromosome condensation RCC1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.75 E-value=7.5 Score=32.23 Aligned_cols=275 Identities=8% Similarity=0.026 Sum_probs=132.5
Q ss_pred CCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 74 NSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 74 h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
....|..|+.-+...+.-..||.|+.|-......+-................-...|..++......+.-..||.|..|-
T Consensus 45 ~~~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG 124 (401)
T d1a12a_ 45 IPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124 (401)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCCCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecccccceeeccccccceecc
Confidence 34568888886667777788999999965432211110001111111112223456777777777777788899999997
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
................. ............|..++.. ....+....++.
T Consensus 125 ~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~i~~i~~g--~~~~~~~~~~g~ 172 (401)
T d1a12a_ 125 SFRDNNGVIGLLEPMKK------------------------------SMVPVQVQLDVPVVKVASG--NDHLVMLTADGD 172 (401)
T ss_dssp CEEETTEEEESSBBTBC------------------------------EEEEEEECCSSCEEEEEEC--SSEEEEEETTSC
T ss_pred ccccccccccccCCccc------------------------------cceeeeeccCCceeEEEec--ccceeeeecCCc
Confidence 53221100000000000 0000011122345555443 334445566788
Q ss_pred EEEEecCCCeEEE----------------------Ee-----ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 234 FKIWRTSDFRCLE----------------------SV-----KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 234 i~iwd~~~~~~~~----------------------~~-----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+..|-....-.+. .. .......+..++.. ....+.-..+|.+..|.....
T Consensus 173 ~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g---~~~~~~l~~~g~v~~~g~n~~ 249 (401)
T d1a12a_ 173 LYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG---AYFTFAISHEGHVYGFGLSNY 249 (401)
T ss_dssp EEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEE---TTEEEEEETTCCEEEEECCTT
T ss_pred ccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEec---CCeEEEEecCCeEeeecccce
Confidence 8888643311000 00 00111235555543 335555667888988864321
Q ss_pred hhh-c-----cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 287 ALQ-V-----NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 287 ~~~-~-----~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
... . .........+......+..++ ......++-..+|.|+.|.-...-.+-......... ....+. ...
T Consensus 250 g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~--~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~-~P~~i~-~~~ 325 (401)
T d1a12a_ 250 HQLGTPGTESCFIPQNLTSFKNSTKSWVGFS--GGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKS-IPTLIS-RLP 325 (401)
T ss_dssp STTSCSSCSCEEEEEECGGGCCTTCCEEEEE--ECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEE-EEEECC-SSS
T ss_pred ecccccccccceeccccccccccceeEEEEe--eeccceeeeccCCCEEEecccccCccCCCccccccc-CCEEcC-CCC
Confidence 100 0 000111112222223343333 344566777789999999765322111111111111 111121 224
Q ss_pred ceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 361 AILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 361 ~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
.|..|+....+.++-..||.|+.|=..
T Consensus 326 ~i~~Is~G~~hs~alt~dG~v~~WG~n 352 (401)
T d1a12a_ 326 AVSSVACGASVGYAVTKDGRVFAWGMG 352 (401)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEECC
T ss_pred CeEEEEeeCCEEEEEeCCCeEEEEecC
Confidence 577887777777778899999999543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=84.01 E-value=9.5 Score=30.97 Aligned_cols=158 Identities=9% Similarity=0.085 Sum_probs=81.9
Q ss_pred eEEEEEccCCCEEEEEeC------------CCcEEEEecCCCeEEE-Eee--cc----cccceEEEEEeecCC--cEEEE
Q 041325 213 VSALALSSDGSLLYSTSW------------DRTFKIWRTSDFRCLE-SVK--NA----HDDAINAIVVSKSND--GFVYT 271 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~-~~~--~~----~~~~v~~~~~~~~~~--~~l~~ 271 (450)
..+|+..|+|..+++++. .|.|.++|+.+.+... .+. .. ..-....+......+ ..|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence 456778888877666542 4889999987653221 111 00 111234444433222 23444
Q ss_pred E---cCCCcEEEEeCcchhhhccccchhhhhHh-hcccceEEEEEcCCCCEEEEeeC---C------------CcEEEEE
Q 041325 272 G---SADTKIKVWKKLRAALQVNKKHSLVQTLE-KHKSAVTALALSTDGTVLYSGAC---D------------RSILVWE 332 (450)
Q Consensus 272 ~---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~g~~---d------------g~i~vwd 332 (450)
. .....|.+|++.... ........+. ......+.+++..++.++++-.. + +.-.+|.
T Consensus 117 vnH~~~~~~ieif~~~~~~----~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~ 192 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEE----KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 192 (340)
T ss_dssp EECSTTCCEEEEEEEETTT----TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEE
T ss_pred EeccCCCceeEEEEEeCCC----CeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEE
Confidence 3 245678888875433 1111111111 12244678888888887777321 0 1223333
Q ss_pred cCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCC
Q 041325 333 RDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~ 388 (450)
...++.. .....-...+.++++++ ++++-+..+.|++|++..
T Consensus 193 ~~~~~~~--------------~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~ 237 (340)
T d1v04a_ 193 YSPNDVR--------------VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 237 (340)
T ss_dssp ECSSCEE--------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EcCCceE--------------EEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCC
Confidence 3322211 11111234577888754 556667788899999874
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.29 E-value=6.3 Score=33.63 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
...++|+|.|||+++++--.+|.|++++..+++.
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~ 60 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV 60 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE
Confidence 4678999999999888765579999998777653
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=81.98 E-value=9.7 Score=29.61 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=63.2
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.|+.+..|.....-...... .....+..+... .. ..+.. .|+.+..|.-.... ...........|..
T Consensus 81 ~dg~v~~wG~~~~gq~~~~~-~~~~~~~~i~~~--~~-~~~~~-~dg~v~~~g~~~~~--------~~~~~~~~~~~v~~ 147 (273)
T d1jtdb_ 81 KDGEVIAWGGNEDGQTTVPA-EARSGVDAIAAG--AW-ASYAL-KDGKVIAWGDDSDG--------QTTVPAEAQSGVTA 147 (273)
T ss_dssp ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEEE--TT-EEEEE-ETTEEEEEECCTTS--------TTSCCGGGGSSEEE
T ss_pred eeeeeeccCCCcceeecccc-ccccceeEEeee--cc-ccccc-ccccceecccCCCC--------ceeeeccCCceEEE
Confidence 37888888764322111111 223345555544 23 22222 47889999743322 11111112234554
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
++-. .+......++.++.|-....... .........|..++....+.+.-. ||.|+.|=..
T Consensus 148 ~~~~---~~~~~~~~~g~~~~~G~~~~g~~-------------~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n 208 (273)
T d1jtdb_ 148 LDGG---VYTALAVKNGGVIAWGDNYFGQT-------------TVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDN 208 (273)
T ss_dssp EEEC---SSEEEEEETTEEEEEECCTTSTT-------------SCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECC
T ss_pred Eecc---ceeeeeecccceeEeecccCCcc-------------cccccccCCccceeccceeeEEEe-cCcEEEcCCC
Confidence 4432 22333445788988876532211 111123456777876655444333 8999999544
|