Citrus Sinensis ID: 041329

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380----
Protein Sequence
MAKSESPDIEVGNMYFCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIVL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEccEEEEEEHHHHHHHHcccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHccccccHHHHHHHHHHEEccEEEEccccccccccccccccccHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccEEEEEEccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccEEEcccccccccccccccEEEEEHHHHHHccccccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEccccccccccccccEEccccHHHHHHHHHHHccHHHHHHHHccccccccccccccEcHHHHHHHHHHHccccccccccEEEEEEccccEEEEEEHEEEEcccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHEEEcccccccccHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHEEEccccccHHHHHHccccHHHHHHHHHHHHccccccHHccccccHHHcHEEEcccccccHHcccccccHHHHHHHHHHHcccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
maksespdievgnmyfcyadhfpgrilSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQvaheedsreDQLWFQIGEHLIRLSIVEWCLVTglsfgvdtKRKIDEMEERLRNTyfggvhrkINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARnnhcqinfdwldevddieyfrkcpwgllSWKMIYESLDNAlfekdekfkrtrlknpdhniekynlygfTSGVQVFLNQLwnngdcavdslvfddrlnsylcgrqhtmsksmtdvdmpleviFPRWLEYvgfynirpelrsadpwkviavksapqqepgtgdcgVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVdifnddivl
Flexible Loop (DISEMBL)
maksespdievGNMYFCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLsfgvdtkrkiDEMEERLRntyfggvhrkinvNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEkdekfkrtrlknpdhniEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRqhtmsksmtdvdmPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVksapqqepgtgdCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIavdifnddivl
Low Complexity Region (SEG)
MAKSESPDIEVGNMYFCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIVL
Disordered region (IsUnstruct)
*********EVGNMYFCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKS******GTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDI**
Disordered Region (DISOPRED)
************NMYFCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESL*******************DHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFY******RSADPWKVIAV***********DCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIVL
Disordered Region (DISEMBL)
********IEVGNMYFCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQV********DQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIVL
Disordered Region (DISPRO)
******PDIEVGNMYFCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIVL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKSESPDIEVGNMYFCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
46398240	423	Ulp1-like peptidase [Cucumis melo] gi|51	0.903	0.820	0.244	2e-19
46398241	428	Ulp1-like peptidase [Cucumis melo] gi|51	0.627	0.563	0.301	4e-19
449462703	418	PREDICTED: uncharacterized protein LOC10	0.906	0.832	0.250	4e-17
449437278	418	PREDICTED: uncharacterized protein LOC10	0.906	0.832	0.238	1e-13
147778025	701	hypothetical protein VITISV_042738 [Viti	0.291	0.159	0.398	1e-13
147776054	382	hypothetical protein VITISV_027079 [Viti	0.299	0.301	0.388	2e-13
449449150	349	PREDICTED: uncharacterized protein LOC10	0.705	0.776	0.276	1e-11
449445766	686	PREDICTED: uncharacterized protein LOC10	0.812	0.454	0.259	1e-11
449462705	576	PREDICTED: uncharacterized protein LOC10	0.812	0.541	0.256	1e-11
449445732	583	PREDICTED: uncharacterized protein LOC10	0.812	0.535	0.256	1e-11

>gi|46398240|gb|AAS91798.1| Ulp1-like peptidase [Cucumis melo] gi|51477401|gb|AAU04774.1| Ulp1 peptidase-like [Cucumis melo]

 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 178/413 (43%), Gaps = 66/413 (15%)

Query: 19  ADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLR 78
           + HF   +  +  L      I+ KL   QL++ +   FGHFL+  +  F+  ++H LLLR
Sbjct: 18  SHHFYSLVSCLSHLEKTTHNIKAKLKPDQLALFRKTKFGHFLDL-NIVFNGPLIHYLLLR 76

Query: 79  QVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGV 138
           +V   ED  +D + F +G  +      E+ +VTGL +G            RL   +F   
Sbjct: 77  EV---EDEGKDSISFLLGGVVCTFGRREFNIVTGL-WGPKEDYIQLGGNSRLLEKFFKD- 131

Query: 139 HRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIE 198
              + V++ + +F E    E DD D +K+AL YF +I L  ++   +++  +L   DD  
Sbjct: 132 KDCVYVSDLEDIFLEY---EGDDDDIVKLALVYFIEISLLGKDRRTKVDIGFLKIADDWN 188

Query: 199 YFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQ 258
            F    WG + +     +L  AL   D+++ + + K+     +KY + GF   +Q  L  
Sbjct: 189 SFNNYDWGRIVFVRTLSALKRAL---DKQYAKGKKKST--QTKKYTINGFPHALQRILVS 243

Query: 259 LWN-NGDCAVDSLVFD----DRLNSYLCGRQ----------------------------- 284
            W    +C  ++  FD     RL  Y+ G +                             
Sbjct: 244 KWPLYKECIKENRPFDWDEEYRLVDYVVGSKVDFQDPWASVDYVYSPFNVHGNHWVLLCL 303

Query: 285 ---------------HTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRS-ADPWKVIA 328
                           T ++ MT++ +P+  + P+ L+  GF++ R    +  +PW V+ 
Sbjct: 304 DLVSCQVKVWDSLPSLTTAEEMTNILLPIRQLVPKLLDSTGFFDRRGRSSTYKEPWPVVI 363

Query: 329 VKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLE-FNASHVEYFRKKIAVDIFND 380
           V   P Q     DCGVF +    Y+  G+ L+     ++ YFRK++A  ++ +
Sbjct: 364 VDPIPLQR-NNCDCGVFAIKYFEYIAAGVGLDTLCQENMSYFRKQLAFQVWTN 415

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46398241|gb|AAS91799.1| Ulp1-like peptidase [Cucumis melo] gi|51477402|gb|AAU04775.1| Ulp1 peptidase-like [Cucumis melo]

 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 130/259 (50%), Gaps = 18/259 (6%)

Query: 21  HFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQV 80
           +FP  +   C++  +   I++KLTK QL M +  IFG  L   +  F+  ++H+ LLRQ+
Sbjct: 8   YFPATV--SCQVHKIGSLIKDKLTKDQLQMFEKTIFGPLLNV-NMVFNGQLIHHFLLRQI 64

Query: 81  AHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHR 140
              ED   D + F +    +R +  E+ ++TGL +  +   + D   +RL++  FG  ++
Sbjct: 65  P--EDGNADGICFSVLGKNVRFTQKEFNIITGL-WPTNNPLEKDCDSKRLQSLLFGSENK 121

Query: 141 K-INVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEY 199
           K I   E + +FK   FE  +D DA+K+AL  F + V+  ++   Q + D L  VDD E 
Sbjct: 122 KVITCLEIEEIFKN--FEFTNDDDAVKVALAVFIETVMVGKDKKTQFDMDILGRVDDEEA 179

Query: 200 FRKCPWGLLSWKMIYESLDNALFEKDEKF--KRTRLKNPDHNIEKYNLYGFTSGVQVFLN 257
           F+   W    +  +  SL  +L  K E +  K+TR       +  YN+ G+    Q  +N
Sbjct: 180 FKSFDWSTFFYTRLLNSLKTSLQGKKEAYELKKTR---SSKAVSYYNIKGYVLAFQTGIN 236

Query: 258 QLWNNGDCAVDSLVFDDRL 276
           +     DC V + +FD  L
Sbjct: 237 K----PDCIVWNHIFDTHL 251

Source: Cucumis melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462703|ref|XP_004149080.1| PREDICTED: uncharacterized protein LOC101212094 [Cucumis sativus]

 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 175/415 (42%), Gaps = 67/415 (16%)

Query: 19  ADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLR 78
           A HF   + S+  L +  + I+ KL   QL++ +N  FGHFL+  +  F+  ++H LLLR
Sbjct: 16  AHHFQSIVSSLAHLENSTRTIKAKLKPDQLTLFRNTKFGHFLDL-NIIFNGPLIHYLLLR 74

Query: 79  QVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEM-EERLRNTYFGG 137
           +V   ED R D + F+IGE +      E+ ++TGL         ID +   RL   +F  
Sbjct: 75  EV---EDERVDHISFKIGEVVCSFGRREFNMMTGL--WSSQPEPIDLVGNSRLLEKFFEQ 129

Query: 138 VHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDI 197
             + I +++ +  F E +  + DD D +K+AL YF ++ L  ++   +++       DD 
Sbjct: 130 -KKCIYISDLEDTFVEYE-GDDDDDDIVKLALVYFIEMSLLGKDRRTKVDRTLFRIADDW 187

Query: 198 EYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLN 257
             F    WG L +     +L  AL  +  K K    K       KY + GF   +Q  L 
Sbjct: 188 TTFNNYDWGGLVFGRTLSALKRALDMQHAKGKNKSTKT------KYTVMGFPQALQRLLV 241

Query: 258 QLWNN-GDCAVDSLVF----DDRLNSYLCGRQH--------------------------- 285
             W    +C  ++  F    + RL  Y+ G +                            
Sbjct: 242 AKWPEYQECIKENRPFHWKEEYRLVDYVVGSKQDCQDPWVNVDYIYSPFNIHGNHWILLC 301

Query: 286 -----------------TMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRS-ADPWKVI 327
                            T ++ M  +  P++ + P  L+  GF+  R    +  +PW ++
Sbjct: 302 LDLVRCQVKVWDSLPSLTSAEDMRSILEPIQEMVPNLLDATGFFVRRGGSSTHKEPWPLV 361

Query: 328 AVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLE-FNASHVEYFRKKIAVDIFNDD 381
            V S P Q     DCGVF +    Y   GL +      ++ YFRK++A  ++ ++
Sbjct: 362 IVDSIPLQR-NNSDCGVFTIKYFEYEASGLDVATLCQENMSYFRKQLAFQLWTNN 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437278|ref|XP_004136419.1| PREDICTED: uncharacterized protein LOC101204276 [Cucumis sativus] gi|449442501|ref|XP_004139020.1| PREDICTED: uncharacterized protein LOC101209520 [Cucumis sativus] gi|449443700|ref|XP_004139615.1| PREDICTED: uncharacterized LOC101216800 [Cucumis sativus] gi|449443962|ref|XP_004139744.1| PREDICTED: uncharacterized protein LOC101211335 [Cucumis sativus] gi|449447675|ref|XP_004141593.1| PREDICTED: uncharacterized protein LOC101216800 [Cucumis sativus] gi|449449116|ref|XP_004142311.1| PREDICTED: uncharacterized protein LOC101215362 [Cucumis sativus] gi|449459746|ref|XP_004147607.1| PREDICTED: uncharacterized protein LOC101219741 [Cucumis sativus]

 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 172/415 (41%), Gaps = 67/415 (16%)

Query: 19  ADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLR 78
           A HF   + S+  L +  + I+ KL   QL++ +N  FGHFL+  +  F+  ++H LLLR
Sbjct: 16  AHHFQSIVSSLAHLENSTRTIKAKLKPDQLTLFRNTKFGHFLDL-NIIFNGPLIHYLLLR 74

Query: 79  QVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEM-EERLRNTYFGG 137
           +V   ED R D + F+IGE +      E+ ++TGL         ID +   RL   +F  
Sbjct: 75  EV---EDERVDHISFKIGEVVCSFGRREFNMMTGL--WSSQPEPIDLVGNSRLLEKFFEQ 129

Query: 138 VHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDI 197
             + I +++ +  F E +  + DD D +K+AL YF ++ L  ++   +++       DD 
Sbjct: 130 -KKCIYISDLEDTFVEYE-GDDDDDDIVKLALVYFIEMSLLGKDRRTKVDRTLFRIADDW 187

Query: 198 EYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLN 257
             F    WG L +     +L  AL  +  K K    K       KY + GF   +Q  L 
Sbjct: 188 TTFNNYDWGGLVFGRTLSALKRALDMQHAKGKNKSTKT------KYTVMGFPQALQRLLV 241

Query: 258 QLWNN-GDCAVDSLVF----DDRLNSYLCGRQH--------------------------- 285
             W    +C  ++  F    + RL  Y+ G +                            
Sbjct: 242 AKWPEYQECIKENRPFHWKEEYRLVDYVVGSKQDCQDPWVNVDYIYSPFNIHGNHWILLC 301

Query: 286 -----------------TMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRS-ADPWKVI 327
                            T ++ M  +  P++ + P  L+  GF+  R    +  +PW ++
Sbjct: 302 LDLVRCQVKVWDSLPSLTSAEDMRSILEPIQEMVPNLLDATGFFVRRGGSSTHKEPWPLV 361

Query: 328 AVKSAPQQEPGTGDCGVFVLMVTMYLMFGLR-LEFNASHVEYFRKKIAVDIFNDD 381
            V   P Q+    D GV  +    Y+      +     ++ YFRK++A  ++ ++
Sbjct: 362 IVDFIPLQQ-NNSDYGVVTIKYFEYVAASFDVVTLCQENMSYFRKQLAFQLWTNN 415

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778025|emb|CAN65286.1| hypothetical protein VITISV_042738 [Vitis vinifera]

 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 6/118 (5%)

Query: 20  DHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQ 79
           ++FPG+I  +  L ++ + I++KLT+ QL M +   FGHFL      FS  I+H LLLRQ
Sbjct: 40  EYFPGKIACLSHLVAI-ENIKKKLTEPQLEMFRKSCFGHFLLLPKLRFSAQIVHQLLLRQ 98

Query: 80  VAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGG 137
               E  +++++W  +    +R S  E+ L+TGLSFG  T  K D+   R+R+TYF G
Sbjct: 99  C---ETKKDNEIWILLKSKGLRFSKEEFALITGLSFGPIT--KYDKKSLRIRDTYFKG 151

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776054|emb|CAN69909.1| hypothetical protein VITISV_027079 [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 73/121 (60%), Gaps = 6/121 (4%)

Query: 20  DHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLLRQ 79
           ++FPG+I  +  L ++ + I++KLT+ QL M +   FGHFL      FS  I+H LLLRQ
Sbjct: 65  EYFPGKIACLSHLVAI-ENIKKKLTEPQLEMFRKSCFGHFLLLPXLRFSAQIVHQLLLRQ 123

Query: 80  VAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVH 139
               E  +++++W  +    +R S  E+ L+TGLSFG  T  K D+   R+R+TYF G +
Sbjct: 124 C---ETKKDNEIWILLKSKGLRFSKEEFALITGLSFGPIT--KYDKKSLRIRDTYFKGEN 178

Query: 140 R 140
           +
Sbjct: 179 K 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449150|ref|XP_004142328.1| PREDICTED: uncharacterized protein LOC101222474 [Cucumis sativus]

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 135/293 (46%), Gaps = 22/293 (7%)

Query: 12  GNMY-FCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRV 70
           G MY    A HF   + S+  L +  + I+ KL   QL++ +N  FGHFL+  +  F+  
Sbjct: 8   GPMYKIDPAHHFQSIVSSLAHLENSTRTIKAKLKPDQLTLFRNTKFGHFLDL-NIIFNGP 66

Query: 71  ILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEM-EER 129
           ++H LLLR+V   ED R D + F+IGE +      E+ ++TGL         ID +   R
Sbjct: 67  LIHYLLLREV---EDERVDHISFKIGEVVCSFGRREFNMMTGL--WSSQPEPIDLVGNSR 121

Query: 130 LRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFD 189
           L   +F    + I +++ +  F E +  + DD D +K+AL YF ++ L  ++   +++  
Sbjct: 122 LLEKFFEQ-KKCIYISDLEDTFVEYE-GDDDDDDIVKLALVYFIEMSLLGKDRRTKVDRT 179

Query: 190 WLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFT 249
                DD   F    WG L +     +L  AL  +  K K    K       KY + GF 
Sbjct: 180 LFRIADDWTTFNNYDWGGLVFGRTLSALKRALDMQHAKGKNKSTKT------KYTVMGFP 233

Query: 250 SGVQVFL-NQLWNNGDCAVDSLVFD--DRLNSYLC---GRQHTMSKSMTDVDM 296
             +QV+    +    +C V  +  D   R+  ++C    + H + + + D  M
Sbjct: 234 QALQVWAYESIPTITECGVHKVSNDAIPRMLRWVCELSPKSHVLQRQVFDSPM 286

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445766|ref|XP_004140643.1| PREDICTED: uncharacterized protein LOC101203235 [Cucumis sativus]

 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 151/339 (44%), Gaps = 27/339 (7%)

Query: 12  GNMY-FCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRV 70
           G MY    A HF   + S+  L +  + I+ KL   QL++ +N  FGHFL+  +  F+  
Sbjct: 139 GPMYKIDPAHHFQSIVSSLSHLENSTRTIKAKLKPDQLTLFRNTKFGHFLDL-NIVFNGP 197

Query: 71  ILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEM-EER 129
           ++H LLLR+V   ED R D + F+IGE +      E+ ++TGL         ID +   R
Sbjct: 198 LIHYLLLREV---EDERVDHISFKIGEVVCSFGRREFNMMTGL--WSSQPEPIDLVGNSR 252

Query: 130 LRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFD 189
           L   +F    + I +++ +  F E +  + DD D +K+AL YF ++ L  ++   +++  
Sbjct: 253 LLEKFFEQ-KKCIYISDLEDTFVEYE-GDDDDDDIVKLALVYFIEMSLLGKDRRTKVDRT 310

Query: 190 WLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFT 249
                DD   F    WG L +     +L  AL  +  K K    K       KY + GF 
Sbjct: 311 LFRIADDWTTFNNYDWGGLVFGRTLSALKRALDMQHAKGKNKSTKT------KYTVMGFP 364

Query: 250 SGVQVFL-NQLWNNGDCAVDSLVFD--DRLNSYLC---GRQHTMSKSMTDVDMPLEVI-- 301
             +QV+    +    +C V  +  D   R+  ++C    + H +   + D  M L  +  
Sbjct: 365 QALQVWAYESIPTITECGVHKVSNDAIPRMLRWVCELSAKSHVLQSQVFDSPMFLINVVI 424

Query: 302 --FPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPG 338
              P   E++   +    +    P+  ++ K+   + PG
Sbjct: 425 EMMPEEEEHLRMSSGEL-VEKTHPYNTVSEKNGDSKRPG 462

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462705|ref|XP_004149081.1| PREDICTED: uncharacterized protein LOC101212339 [Cucumis sativus]

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 151/339 (44%), Gaps = 27/339 (7%)

Query: 12  GNMY-FCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRV 70
           G MY    A HF   + S+  L +  + I+ KL   QL++ +N  FGHFL+  +  F+  
Sbjct: 8   GPMYKIDPAHHFQSIVSSLSHLENSTRTIKAKLKPDQLTLFRNTKFGHFLDL-NIVFNGP 66

Query: 71  ILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEM-EER 129
           ++H LLLR+V   ED R D + F+IGE +      E+ ++TGL         ID +   R
Sbjct: 67  LIHYLLLREV---EDERVDHISFKIGEVVCSFGRREFNMMTGL--WSSQPEPIDLVGNSR 121

Query: 130 LRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFD 189
           L   +F    + I +++ +  F E + ++  D D +K+AL YF ++ L  ++   +++  
Sbjct: 122 LLEKFFEQ-KKCIYISDLEDTFVEYEGDDD-DDDIVKLALVYFIEMSLLGKDRRTKVDRT 179

Query: 190 WLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFT 249
                DD   F    WG L +     +L  AL  +  K K    K       KY + GF 
Sbjct: 180 LFRIADDWTTFNNYDWGGLVFGRTLSALKRALDMQHAKGKNKSTKT------KYTVMGFP 233

Query: 250 SGVQVFL-NQLWNNGDCAVDSLVFD--DRLNSYLC---GRQHTMSKSMTDVDMPLEVI-- 301
             +QV+    +    +C V  +  D   R+  ++C    + H +   + D  M L  +  
Sbjct: 234 QALQVWAYESIPTITECGVHKVSNDAIPRMLRWVCELSAKSHVLQSQVFDSPMFLINVVI 293

Query: 302 --FPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPG 338
              P   E++   +    +    P+  ++ K+   + PG
Sbjct: 294 EMMPEEEEHLRMSSGE-LVEKTHPYNTVSEKNGDSKRPG 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445732|ref|XP_004140626.1| PREDICTED: uncharacterized protein LOC101219244 [Cucumis sativus]

 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 151/339 (44%), Gaps = 27/339 (7%)

Query: 12  GNMY-FCYADHFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRV 70
           G MY    A HF   + S+  L +  + I+ KL   QL++ +N  FGHFL+  +  F+  
Sbjct: 8   GPMYKIDPAHHFQSIVSSLSHLENSTRTIKAKLKPDQLTLFRNTKFGHFLDL-NIVFNGP 66

Query: 71  ILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEM-EER 129
           ++H LLLR+V   ED R D + F+IGE +      E+ ++TGL         ID +   R
Sbjct: 67  LIHYLLLREV---EDERVDHISFKIGEVVCSFGRREFNMMTGL--WSSQPEPIDLVGNSR 121

Query: 130 LRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFD 189
           L   +F    + I +++ +  F E + ++  D D +K+AL YF ++ L  ++   +++  
Sbjct: 122 LLEKFFEQ-KKCIYISDLEDTFVEYEGDDD-DDDIVKLALVYFIEMSLLGKDRRTKVDRT 179

Query: 190 WLDEVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFT 249
                DD   F    WG L +     +L  AL  +  K K    K       KY + GF 
Sbjct: 180 LFRIADDWTTFNNYDWGGLVFGRTLSALKRALDMQHAKGKNKSTKT------KYTVMGFP 233

Query: 250 SGVQVFL-NQLWNNGDCAVDSLVFD--DRLNSYLC---GRQHTMSKSMTDVDMPLEVI-- 301
             +QV+    +    +C V  +  D   R+  ++C    + H +   + D  M L  +  
Sbjct: 234 QALQVWAYESIPTITECGVHKVSNDAIPRMLRWVCELSAKSHVLQSQVFDSPMFLINVVI 293

Query: 302 --FPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPG 338
              P   E++   +    +    P+  ++ K+   + PG
Sbjct: 294 EMMPEEEEHLRMSSGEL-VEKTHPYNTVSEKNGDSKRPG 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	384
TAIR|locus:2029549	673	AT1G31150 [Arabidopsis thalian	0.466	0.265	0.272	6.6e-08

TAIR|locus:2029549 AT1G31150 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 54/198 (27%), Positives = 93/198 (46%)

Query:    17 CYADHFPGRILSMCK-LSSVVKAIEEKLTKRQLSMLKNDIFGHFLE--CQSFSFSRVILH 73
             CY D     I S  + L ++   ++      +   +K+  FG   E      S S  ++H
Sbjct:    20 CYPDKARLNIYSRPEYLGTIANLLKGS---EEWERIKSSQFGKLFEFPVARCSHSGKLIH 76

Query:    74 NLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGV-----DTKRKIDEMEE 128
              LL RQV  +   ++ +LWF  G H IR SI E+ +VTGL  G      + K+  D    
Sbjct:    77 GLLSRQVVTK---KKHELWFVFGGHPIRFSIREFHIVTGLRCGKLPTEDEVKKHQDSKYL 133

Query:   129 RLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINF 188
              + N  FG   R + + +   V + L+ +++     L +AL    D V+   N+   +  
Sbjct:   134 SVWNRLFGE-KRMVTIGD---VLEMLQKKKLSSWKKLCLALIVIVDGVVVC-NDQSFVTL 188

Query:   189 DWLDEVDDIEYFRKCPWG 206
             D+++ ++DI++F + PWG
Sbjct:   189 DFVEMLNDIDFFLEYPWG 206


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      384       384   0.00091  117 3  11 22  0.47    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  285 KB (2148 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.15u 0.11s 33.26t   Elapsed:  00:00:02
  Total cpu time:  33.15u 0.11s 33.26t   Elapsed:  00:00:02
  Start:  Fri May 10 07:56:29 2013   End:  Fri May 10 07:56:31 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007020 "microtubule nucleation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT2G12100	transposable element gene; similar to unknown protein [Arabidopsis thaliana] (TAIR-AT5G28480.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR-AT3G42580.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR-AT1G45090.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB-ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro-IPR003653); contains InterPro domain Collagen triple helix repeat; (InterPro-IPR008160) (1224 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT2G12150	transposable element gene; Mutator-like transposase family, has a 1.1e-84 P-value blast match t [...] (942 aa)							•		0.887
	AT4G33620	Ulp1 protease family protein; Ulp1 protease family protein; FUNCTIONS IN- cysteine-type peptida [...] (783 aa)							•		0.873
	AT1G09730	Ulp1 protease family protein; Ulp1 protease family protein; FUNCTIONS IN- cysteine-type peptida [...] (984 aa)							•		0.821
	AT5G60190	Ulp1 protease family protein; Encodes a protein that can cleave residues from the C-terminus of [...] (226 aa)							•		0.788
	ULP1B	ULP1B (UB-LIKE PROTEASE 1B); cysteine-type peptidase; UB-LIKE PROTEASE 1B (ULP1B); FUNCTIONS IN [...] (242 aa)							•		0.748
	ULP1A	ULP1A (UB-LIKE PROTEASE 1A); SUMO-specific protease/ cysteine-type peptidase; Encodes a deSUMOy [...] (502 aa)							•		0.716
	OTS2	OTS2 (OVERLY TOLERANT TO SALT 2); SUMO-specific protease/ cysteine-type peptidase; Encodes a de [...] (571 aa)							•		0.679
	AT5G51740	peptidase M48 family protein; peptidase M48 family protein; FUNCTIONS IN- metalloendopeptidase [...] (442 aa)							•		0.599
	ULP1D	ULP1D (UB-LIKE PROTEASE 1D); SUMO-specific protease/ cysteine-type peptidase; Encodes a deSUMOy [...] (584 aa)							•		0.591
	ACT4	ACT4 (ACTIN 4); structural constituent of cytoskeleton; Encodes one of eight Arabidopsis actins [...] (377 aa)							•		0.505

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	384
pfam09331	142	pfam09331, DUF1985, Domain of unknown function (DU	2e-16
pfam02902	216	pfam02902, Peptidase_C48, Ulp1 protease family, C-	1e-05

>gnl|CDD|220183 pfam09331, DUF1985, Domain of unknown function (DUF1985)

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 48/145 (33%), Positives = 73/145 (50%), Gaps = 5/145 (3%)

Query: 75  LLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTY 134
           LLLRQ+      ++ +LWF      IR S+ E+ LVTGL  G   K K  + +  L+   
Sbjct: 1   LLLRQL---VTKKKYELWFVFAGKPIRFSLREFALVTGLPCGKYPKEKKVKKKGTLKKGP 57

Query: 135 FGG--VHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLD 192
           F       K +V   D   K  K ++ D  D L++AL  F D VL   +   +I    L+
Sbjct: 58  FWNKLFGLKKDVTVDDVEEKLKKKKKKDSEDRLRLALLLFVDGVLLGTSKKTKIPKFHLE 117

Query: 193 EVDDIEYFRKCPWGLLSWKMIYESL 217
            V+D+E F   PWG L+++M+ +S+
Sbjct: 118 MVEDLEAFLTFPWGRLAFEMLMKSI 142

Members of this family of functionally uncharacterized domains are found in a set of Arabidopsis thaliana hypothetical proteins. Length = 142

>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 323 PWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNA--SHVEYFRKKIAVDIF 378
           P+++  +   PQQ P +GDCG +VL     L  G+  EF      V+ FRKK+AVDI+
Sbjct: 153 PFEIKRLTKVPQQ-PNSGDCGPYVLKFIELLAEGVPFEFLTADKDVDRFRKKLAVDIY 209

This domain contains the catalytic triad Cys-His-Asn. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	384
PF09331	142	DUF1985: Domain of unknown function (DUF1985); Int	100.0
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	99.97
PLN03189	490	Protease specific for SMALL UBIQUITIN-RELATED MODI	99.94
COG5160	578	ULP1 Protease, Ulp1 family [Posttranslational modi	99.8
PF02902	216	Peptidase_C48: Ulp1 protease family, C-terminal ca	99.55
KOG3246	223	consensus Sentrin-specific cysteine protease (Ulp1	98.67
PF10536	363	PMD: Plant mobile domain; InterPro: IPR019557 This	98.57
KOG0778	511	consensus Protease, Ulp1 family [Posttranslational	85.86
KOG0779	595	consensus Protease, Ulp1 family [Posttranslational	81.35

>PF09331 DUF1985: Domain of unknown function (DUF1985); InterPro: IPR015410 This domain is functionally uncharacterised; it is found in a set of Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins

Probab=100.00  E-value=6.1e-45  Score=320.98  Aligned_cols=137  Identities=36%  Similarity=0.575  Sum_probs=127.1

Q ss_pred             HHHHhhhcccccCCcceeEEEcceeeeeehhhhhhhhccccCCCCccchh--hh---HHHhhhhhcCCcccccchHHHHH
Q 041329           75 LLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRKID--EM---EERLRNTYFGGVHRKINVNEFDA  149 (384)
Q Consensus        75 lL~Rql~~~~~~K~~E~W~v~~G~PIRfsl~Ef~lvTGL~C~~~p~~~~~--~~---~~~~~~~lFg~~~~~~tv~~v~~  149 (384)
                      ||+||+   +|+|++|+||+|||+||||||+|||+||||||+++|+.+..  .+   +.++|+++|| .+++||++||++
T Consensus         1 lL~rql---~~~k~~e~W~~~~g~piRfsl~Ef~lvTGL~C~~~p~~~~~~~~~~~~~~~fw~~Lf~-~~~~vtv~dv~~   76 (142)
T PF09331_consen    1 LLLRQL---VTEKKYEIWFVFNGVPIRFSLREFALVTGLNCGPYPKEKKVDKKGKKEKGSFWNKLFG-REEDVTVEDVIA   76 (142)
T ss_pred             CCceee---eccCCceEEEEECCEeeEecHHHHHhhcCCcCCCCCcccchhhccccchhhhhhhhcc-ccccCcHHHHHH
Confidence            689999   99999999999999999999999999999999999985432  22   2289999999 578999999999


Q ss_pred             HHHhhhccccCchhhhHHHHHhhhhheeecCCCCCCCChhhhhhhhchhhhhcCCchhHHHHHHHHHH
Q 041329          150 VFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVDDIEYFRKCPWGLLSWKMIYESL  217 (384)
Q Consensus       150 ~L~~~~~~~~~~~~rlrla~L~~v~gvll~~~~~~~i~~~~~~~v~Dle~f~~yPWGr~aF~~lm~~I  217 (384)
                      +|++++  .+++++|+|+|+|+|++|||+|++++++|+.++++||+|+|+|++|||||+||+.||++|
T Consensus        77 ~L~~~~--~~~~~~Rlrla~L~~v~gvl~~~~~~~~i~~~~~~~v~Dl~~f~~yPWGr~sF~~~~~sI  142 (142)
T PF09331_consen   77 KLKKMK--KWDSEDRLRLALLLFVDGVLIATSKTTKIPKEHLKMVDDLEKFLNYPWGRYSFDMLMKSI  142 (142)
T ss_pred             HHhhcc--cCChhhHHHHHHHHhhheeeeccCCCCCCCHHHHHHHhhHHHHhcCCcHHHHHHHHHhcC
Confidence            999986  689999999999999999999999999999999999999999999999999999999976

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.2e-32  Score=278.09  Aligned_cols=178  Identities=19%  Similarity=0.195  Sum_probs=141.2

Q ss_pred             hhhchhhhhcCCchhHHHHHHHHHHhhhhhcchhhhhhccccCCCCCccceecccchhh--h--hhhhhccccCCCCCCC
Q 041329          193 EVDDIEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSG--V--QVFLNQLWNNGDCAVD  268 (384)
Q Consensus       193 ~v~Dle~f~~yPWGr~aF~~lm~~Ik~~~~~~~~~y~~~kl~~~~~~~~~y~l~GF~~~--L--ql~a~e~~p~~~~~v~  268 (384)
                      ..+|+..+..+-|=..   ..++-....+.        .+.++.++-+..|+++.|.++  .  .+-++++|++++++++
T Consensus       321 t~~dl~tl~~~~WLND---evINfYm~ll~--------ers~~~~~yp~~h~FnTFFy~kL~~~gy~~VkRWTk~v~if~  389 (511)
T KOG0778|consen  321 TGKDLQTLRPGNWLND---EVINFYMELLK--------ERSKKDSKYPKVHAFNTFFYTKLVGRGYAGVKRWTKKVDIFD  389 (511)
T ss_pred             cHHHHhhccCccchhH---HHHHHHHHHHH--------hhccccCCCceEEEEechhhhhhhhcchHHHHhHhhccCccc
Confidence            4589999999999776   45554444442        111121223345666666553  2  4456899999887776


Q ss_pred             cc---cccccceeeeeccce------eeccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCCC
Q 041329          269 SL---VFDDRLNSYLCGRQH------TMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGT  339 (384)
Q Consensus       269 n~---~f~er~I~y~~~~i~------~~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g  339 (384)
                      ..   +..+..|||.-..|+      .||||||+.....+++|++||++|+ .+|++.++|.++|.++..+++|||.| |
T Consensus       390 ~d~i~vPIH~~vHW~l~vid~r~k~i~y~DS~~~~~nr~~~aL~~Yl~~E~-~~k~~~~~d~s~w~~~~~~~iP~Q~N-g  467 (511)
T KOG0778|consen  390 KDIIFVPIHLGVHWCLAVIDLREKTIEYYDSLGGGPNRICDALAKYLQDES-RDKSKKDFDVSGWTIEFVQNIPQQRN-G  467 (511)
T ss_pred             cceeEeeeecCceEEEEEEEcccceEEEeeccCCCCcchHHHHHHHHHHHH-hhhhcCCCCccchhhhhhhccccccC-C
Confidence            42   456677888644444      7899999665555599999999999 99999999999999999999999999 9


Q ss_pred             CCchhHHHHHHHHHhcCCCcccCccchHHHHHHHHHHHHcCccc
Q 041329          340 GDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIV  383 (384)
Q Consensus       340 ~DCGVF~c~~a~~ls~~~~~~Fsq~dmp~~R~~m~~Ei~~~~l~  383 (384)
                      +|||||+||||+|+++|.|++|||+|||+||++||+||++++|.
T Consensus       468 ~DCG~f~c~~~~~~s~~~p~~ftq~dmp~fR~~m~~eI~~~~l~  511 (511)
T KOG0778|consen  468 SDCGMFVCKYADYISRDVPLTFTQQDMPYFRKKMAKEILHLKLL  511 (511)
T ss_pred             CccceEEeeechhhccCCCcccChhhhHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999999999999999999999999874

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional

Probab=99.94  E-value=9.8e-28  Score=243.61  Aligned_cols=95  Identities=21%  Similarity=0.326  Sum_probs=90.8

Q ss_pred             eeccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCccc
Q 041329          286 TMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASH  365 (384)
Q Consensus       286 ~~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq~d  365 (384)
                      .+|||||+.+..+++.|++||.+|+ ++|++.+++.++|+.....++|||.| |+|||||+|+||+|+++|.+++|+|+|
T Consensus       395 ~yyDSLgg~~~~vL~~L~rYL~~E~-kdK~g~d~D~s~W~~~~~~~vPQQ~N-G~DCGVFVL~yAE~~SrG~~LtFSQeD  472 (490)
T PLN03189        395 QYLDSLKGRDPKILDALAKYYVDEV-KDKSEKDIDVSSWEQEFVEDLPEQKN-GYDCGMFMIKYIDFYSRGLGLCFGQEH  472 (490)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHH-hhhcCCCcchhcceeccCCCCCCCCC-CCCHHHHHHHHHHHHcCCCCCCcChhh
Confidence            4669999999999999999999999 99999999999999887789999999 999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHcCcc
Q 041329          366 VEYFRKKIAVDIFNDDI  382 (384)
Q Consensus       366 mp~~R~~m~~Ei~~~~l  382 (384)
                      ||++|+||++||++.++
T Consensus       473 Mp~fRrRma~EIl~~r~  489 (490)
T PLN03189        473 MPYFRLRTAKEILRLKA  489 (490)
T ss_pred             hHHHHHHHHHHHHHhhc
Confidence            99999999999998875

>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=5.9e-21  Score=193.64  Aligned_cols=173  Identities=17%  Similarity=0.153  Sum_probs=123.4

Q ss_pred             hhhchhhhhcCCchhHH-HHHHHHHHhhhhhcchhhhhhccccCCCCCccceecccchhh-h---hhhhhccccCCCCCC
Q 041329          193 EVDDIEYFRKCPWGLLS-WKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSG-V---QVFLNQLWNNGDCAV  267 (384)
Q Consensus       193 ~v~Dle~f~~yPWGr~a-F~~lm~~Ik~~~~~~~~~y~~~kl~~~~~~~~~y~l~GF~~~-L---ql~a~e~~p~~~~~v  267 (384)
                      ...|+..+.+=.|=... -+--|+-|+...            +..-+..+.+.++.|.+- |   .+-.+++|+++++.+
T Consensus       384 T~~D~~~L~~~~wLNDtIIdFy~k~ls~~s------------k~~s~~~~vh~FnTFFYT~LsrrGy~gVrrW~kk~dif  451 (578)
T COG5160         384 TNQDFKRLRNGDWLNDTIIDFYMKLLSKIS------------KNTSKREQVHLFNTFFYTKLSRRGYSGVRRWTKKTDIF  451 (578)
T ss_pred             ehHhhhhhccccchhhHHHHHHHHHHHHhc------------cCcccccceEEeehhhHHHHHHHHhHHHHHHHhccCcc
Confidence            35788888888886541 112222222221            111223355677777552 3   333477899887776


Q ss_pred             Ccc-c--ccccceeeeeccce------eeccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCC
Q 041329          268 DSL-V--FDDRLNSYLCGRQH------TMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPG  338 (384)
Q Consensus       268 ~n~-~--f~er~I~y~~~~i~------~~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~  338 (384)
                      ++. +  ...-..||+..-|.      .|||||++....+++.|+.|+.+|. +.    ..+.++|......++|||.| 
T Consensus       452 ~~k~I~iPIni~~HW~l~II~~~~~~i~~~DSLan~~~~v~~~L~~Y~ldE~-k~----~~~k~~~~~~~~~~vPqQ~N-  525 (578)
T COG5160         452 SKKYIFIPINISYHWFLAIIDNPKKNILYFDSLANTHDPVLEFLRSYLLDEY-KI----QHDKDPQIKMKHCKVPQQRN-  525 (578)
T ss_pred             ccceEEEEecccceEEEEEeecCcceeEEecccccCcHHHHHHHHHHHHHHH-hc----ccCCchhhhhhcCCCCCCCC-
Confidence            542 1  22224455522111      6889999999999999999999998 43    44556687777789999999 


Q ss_pred             CCCchhHHHHHHHHHhcCCCcccCccchHHHHHHHHHHHHcCccc
Q 041329          339 TGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIV  383 (384)
Q Consensus       339 g~DCGVF~c~~a~~ls~~~~~~Fsq~dmp~~R~~m~~Ei~~~~l~  383 (384)
                      |+|||||+||+++|.+.+.|..|++.|||.+|++|+++|++.+|.
T Consensus       526 g~DCGV~vc~~~~~~~~~~p~~f~~nd~~r~Rk~m~h~i~~~qi~  570 (578)
T COG5160         526 GSDCGVFVCMFIRYFLENPPEQFSKNDRPRARKNMAHTIKDLQIN  570 (578)
T ss_pred             CCccceEEEEeeeecccCChhhcCccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999987763

>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification

Probab=99.55  E-value=4.9e-15  Score=136.39  Aligned_cols=89  Identities=25%  Similarity=0.370  Sum_probs=75.0

Q ss_pred             eccCCCCCCc-----hHHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCCCcc-
Q 041329          287 MSKSMTDVDM-----PLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLE-  360 (384)
Q Consensus       287 ~~DS~g~~~~-----~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~-  360 (384)
                      +||||++...     .++..+..||..+. .++.+...+.++|......++|||.| ++|||||+|+|+++++.+.+.+ 
T Consensus       111 ~~DSl~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~pqQ~n-~~dCGv~vl~~~~~~~~~~~~~~  188 (216)
T PF02902_consen  111 VYDSLGSSNNDKRYKRVIENIIPFLKREY-KKKEGRDPDKSPFKIVRPPNVPQQPN-GYDCGVYVLKFMECLLEGPSFDF  188 (216)
T ss_dssp             EE-TTSTSSH-HHHHHHHHHHHHHHHHHH-HHHHSSCT-TTTCEEEEECTS-SSSS-SSCHHHHHHHHHHHHHCTHHSTG
T ss_pred             EEeccccccccccchhhhhhhhhhhhhcc-ccccccccccceeeecccccccCCCC-CCCcHHHHHHHHHHHHhCCCCcc
Confidence            4499999999     78899999999887 66666666778998887889999999 9999999999999999998877 


Q ss_pred             ---cCccchHHHHHHHHHHH
Q 041329          361 ---FNASHVEYFRKKIAVDI  377 (384)
Q Consensus       361 ---Fsq~dmp~~R~~m~~Ei  377 (384)
                         |+|+||+.+|++|+.+|
T Consensus       189 ~~~l~~~~i~~~r~~~a~~~  208 (216)
T PF02902_consen  189 SQELTEEDIKNFRKKLAVDL  208 (216)
T ss_dssp             CCSBTGHHHHHHHHHHHH--
T ss_pred             cccCCHHHHHHHHHHHHhhc
Confidence               79999999999999654

; InterPro: IPR003653 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins contain cysteine peptidases belonging to MEROPS peptidase family C48 (Ulp1 endopeptidase family, clan CE). The protein fold of the peptidase domain for members of this family resembles that of adenain, the type example for clan CE. This group of sequences also contains a number of hypothetical proteins, which have not yet been characterised, and non-peptidase homologues. These are proteins that have either been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of the peptidases in the family. The Ulp1 endopeptidase family contain the deubiquitinating enzymes (DUB) that can de-conjugate ubiquitin or ubiquitin-like proteins from ubiquitin-conjugated proteins. They can be classified in 3 families according to sequence homology [, ]: Ubiquitin carboxyl-terminal hydrolase (UCH) (see PDOC00127 from PROSITEDOC), Ubiquitin-specific processing protease (UBP) (see PDOC00750 from PROSITEDOC), and ubiquitin-like protease (ULP) specific for de-conjugating ubiquitin-like proteins. In contrast to the UBP pathway, which is very redundant (16 UBP enzymes in yeast), there are few ubiquitin-like proteases (only one in yeast, Ulp1). Ulp1 catalyses two critical functions in the SUMO/Smt3 pathway via its cysteine protease activity. Ulp1 processes the Smt3 C-terminal sequence (-GGATY) to its mature form (-GG), and it de-conjugates Smt3 from the lysine epsilon-amino group of the target protein []. Crystal structure of yeast Ulp1 bound to Smt3 [] revealed that the catalytic and interaction interface is situated in a shallow and narrow cleft where conserved residues recognise the Gly-Gly motif at the C-terminal extremity of Smt3 protein. Ulp1 adopts a novel architecture despite some structural similarity with other cysteine protease. The secondary structure is composed of seven alpha helices and seven beta strands. The catalytic domain includes the central alpha helix, beta-strands 4 to 6, and the catalytic triad (Cys-His-Asp). This profile is directed against the C-terminal part of ULP proteins that displays full proteolytic activity [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1EUV_A 2HL8_A 2HKP_A 2HL9_A 1XT9_A 2BKQ_C 2BKR_A 2IO1_E 1TH0_B 1TGZ_A ....

>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only]

Probab=98.67  E-value=4.3e-08  Score=91.07  Aligned_cols=82  Identities=15%  Similarity=0.015  Sum_probs=60.1

Q ss_pred             eeccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHH----hcCCCccc
Q 041329          286 TMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYL----MFGLRLEF  361 (384)
Q Consensus       286 ~~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~l----s~~~~~~F  361 (384)
                      .+|||+++.|....+.+.+=+.+--  .++..        ......+|||+| |||||+++|.+++.|    +++.--+=
T Consensus       123 ~hyDS~~n~nt~~a~~l~~kl~~ll--~~~~~--------~~~~~~~~qQqN-gyDCG~hV~~~t~~l~~~~~~~~~~~~  191 (223)
T KOG3246|consen  123 YHYDSLSNGNTKDAKSLMKKLRALL--KKKFA--------KRVECKCLQQQN-GYDCGLHVCCNTRVLAERLLRCPYATS  191 (223)
T ss_pred             EEeecccCCCcHHHHHHHHHHHHHH--hhhhh--------hcccccChhhhc-CCchhHHHHHHHHHHHHHHhccccccc
Confidence            5799999999988877776666553  22111        111557899999 999999999886654    55554557


Q ss_pred             CccchHHHHHHHHHHHH
Q 041329          362 NASHVEYFRKKIAVDIF  378 (384)
Q Consensus       362 sq~dmp~~R~~m~~Ei~  378 (384)
                      +|.+.+.+|+++..||.
T Consensus       192 ~~~~~~~~i~~lr~~l~  208 (223)
T KOG3246|consen  192 SQLLVVDLIKALREELL  208 (223)
T ss_pred             cchhhHHHHHHHHHHHH
Confidence            78888889988887765

>PF10536 PMD: Plant mobile domain; InterPro: IPR019557 This entry represents a domain found in a variety of transposases []

Probab=98.57  E-value=6.6e-08  Score=97.28  Aligned_cols=182  Identities=14%  Similarity=0.172  Sum_probs=125.5

Q ss_pred             cccceecc--ccccchHHHHHHHHHhhhcccccCCcceeEEEcceeeeeehhhhhhhhccccCCCCccc-hhhhHHHhhh
Q 041329           56 FGHFLECQ--SFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDTKRK-IDEMEERLRN  132 (384)
Q Consensus        56 Fg~ll~~~--~~~~s~k~~h~lL~Rql~~~~~~K~~E~W~v~~G~PIRfsl~Ef~lvTGL~C~~~p~~~-~~~~~~~~~~  132 (384)
                      ||-+..+.  .......++-.|.-|==     ...+-  |++.+-.+..+|+++++++|||+.+.|-.. ...+...+..
T Consensus         2 ~g~~~~i~~s~~~~~~~li~al~erW~-----~et~t--F~~~~gEmtiTL~DV~~llGLpi~G~pv~~~~~~~~~~~~~   74 (363)
T PF10536_consen    2 FGILDAIMASRITIDRSLISALVERWD-----PETNT--FHFPWGEMTITLEDVAMLLGLPIDGRPVTGPLPPDWRDLCE   74 (363)
T ss_pred             chhHhhhhhhcCCCCHHHHHHHHHHhC-----cccCe--eecccccccchhhhhhhccccccccccccCccccchhhHHH
Confidence            56666665  55666667766544443     22345  999999999999999999999998776421 1111233333


Q ss_pred             hhcCC-------cccccchHHHHHHHHhhhccccCchhhhHHHHHhhhhheeecCCCCC-CCChhhhhhhhchhhhhcCC
Q 041329          133 TYFGG-------VHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHC-QINFDWLDEVDDIEYFRKCP  204 (384)
Q Consensus       133 ~lFg~-------~~~~~tv~~v~~~L~~~~~~~~~~~~rlrla~L~~v~gvll~~~~~~-~i~~~~~~~v~Dle~f~~yP  204 (384)
                      .|.|.       ....++...+.+.+.+..   .++++...-|+|+...|.++.+++.. .|+..++.++.|++...+|.
T Consensus        75 ~ll~~~~~~~~~~~~~~~~~wl~~~~~~~~---~~d~~~~~rAFll~~lg~~lfp~~~~~~v~~~~l~~~~~l~~~~~~~  151 (363)
T PF10536_consen   75 ELLGVSPQIKSKKGSSIRLSWLEEFFSNRP---EDDEEQYHRAFLLYWLGSFLFPDKSGDYVSPRYLPLAVDLARIKRYA  151 (363)
T ss_pred             HHhcccccccccccccchhhheeccccccc---cchHHHHHHHHHHHhhhceeccCCCcceeeeeEEeeeeccccccccc
Confidence            44332       112244444445442221   11223566888888888888877766 89999999999999999999


Q ss_pred             chhHHHHHHHHHHhhhhhcchhhhhhccccCCCCCccceecccchhhhhhhhhccccC
Q 041329          205 WGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQLWNN  262 (384)
Q Consensus       205 WGr~aF~~lm~~Ik~~~~~~~~~y~~~kl~~~~~~~~~y~l~GF~~~Lql~a~e~~p~  262 (384)
                      ||..+...+.+++.++..         +..      ....+.|....||+|+.|++|.
T Consensus       152 wg~a~La~ly~~L~~~~~---------~~~------~~~~~~g~~~llq~W~werf~~  194 (363)
T PF10536_consen  152 WGSAVLAYLYRDLCKASR---------KSA------SQSNIGGPLWLLQLWAWERFPV  194 (363)
T ss_pred             cHHHHHHHHHHHHHHHhh---------hcc------cccccccceeeeccchhheeec
Confidence            999999999998886531         110      2357899999999999999885

>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=85.86  E-value=0.28  Score=51.85  Aligned_cols=86  Identities=8%  Similarity=0.064  Sum_probs=70.1

Q ss_pred             hhhhhcCCchhHHHHHHHHHHhhhhhcchhhhhhccccCCCCCccceecccchhhhhhhhhccccCCCCCCCcccccccc
Q 041329          197 IEYFRKCPWGLLSWKMIYESLDNALFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRL  276 (384)
Q Consensus       197 le~f~~yPWGr~aF~~lm~~Ik~~~~~~~~~y~~~kl~~~~~~~~~y~l~GF~~~Lql~a~e~~p~~~~~v~n~~f~er~  276 (384)
                      +++|.+|     .|..|..            ++++-+++|+++++.+.+.-.+.|+++.+  ||+   .+|.+  ..++.
T Consensus       359 ~h~FnTF-----Fy~kL~~------------~gy~~VkRWTk~v~if~~d~i~vPIH~~v--HW~---l~vid--~r~k~  414 (511)
T KOG0778|consen  359 VHAFNTF-----FYTKLVG------------RGYAGVKRWTKKVDIFDKDIIFVPIHLGV--HWC---LAVID--LREKT  414 (511)
T ss_pred             EEEEech-----hhhhhhh------------cchHHHHhHhhccCccccceeEeeeecCc--eEE---EEEEE--cccce
Confidence            4677776     7777743            44567789999999999999999999844  999   77665  79999


Q ss_pred             eeeeeccceeeccCCCCCCchHHHHHHHHHHHhc
Q 041329          277 NSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVG  310 (384)
Q Consensus       277 I~y~~~~i~~~~DS~g~~~~~~~~~l~~yL~~E~  310 (384)
                      |.||+    ++++.-+.....+++.|.+.-.+.+
T Consensus       415 i~y~D----S~~~~~nr~~~aL~~Yl~~E~~~k~  444 (511)
T KOG0778|consen  415 IEYYD----SLGGGPNRICDALAKYLQDESRDKS  444 (511)
T ss_pred             EEEee----ccCCCCcchHHHHHHHHHHHHhhhh
Confidence            99994    5778888999889999999987776

>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones]

Probab=81.35  E-value=1.1  Score=48.56  Aligned_cols=40  Identities=33%  Similarity=0.492  Sum_probs=32.6

Q ss_pred             CCCCCCCCCchhHHHHHHHHHhcCCCcc-------------cCccchHHHHHHH
Q 041329          333 PQQEPGTGDCGVFVLMVTMYLMFGLRLE-------------FNASHVEYFRKKI  373 (384)
Q Consensus       333 P~Q~N~g~DCGVF~c~~a~~ls~~~~~~-------------Fsq~dmp~~R~~m  373 (384)
                      |||.| .+|||+|+..|++....+.+-.             |.+.++-.+|..+
T Consensus       528 p~q~n-~~dcG~~~~~~v~~f~e~~~e~~~~~~~~~~~l~~~~~~~~~~~r~~~  580 (595)
T KOG0779|consen  528 PQQNN-DVDCGSFVLEFVERFIEDAPERFNIEDEGTINLEWFPPKEILKFRDEI  580 (595)
T ss_pred             cCccC-cccchhhHHHHHHHhhhChhhhcccccccccccccCCchHHhhhhhhh
Confidence            89999 9999999999999887775543             7777777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	384
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	2e-07
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	2e-07
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 322 DPWKVIAVKS--APQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFN 379
           + W++ + KS   PQQ  G+ DCG+F       +     + F   H+ YFRK++  +I +
Sbjct: 176 NGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILH 234

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 322 DPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDD 381
           + + +I +   PQQ  G  DCG++V M T+Y      L+F+       R+ IA  I  D 
Sbjct: 162 EDFDLIHLDC-PQQPNGY-DCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDA 219

Query: 382 I 382
           +
Sbjct: 220 L 220

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 322 DPWKVIAVKS--APQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFN 379
             W   ++K    PQQ  G+ DCG+F      Y+     + F    +  FRKK+  +I +
Sbjct: 164 LEWTHHSMKPHEIPQQLNGS-DCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILH 222

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 57/447 (12%), Positives = 122/447 (27%), Gaps = 141/447 (31%)

Query: 8   DIEVGNMYFCYAD---HFPGRILSMCKLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQS 64
           D E G   + Y D    F    +       V    +  L+K ++    + I        +
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI----DHIIM---SKDA 60

Query: 65  FSFSRVILHNLLLRQ-----VAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGVDT 119
            S +  +   LL +Q        EE  R +  +                L++ +      
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF----------------LMSPIKTEQRQ 104

Query: 120 KRKIDEMEERLRNTYFGGVH--RKINVNEFDAVFKELK--FEEMDDMDAL---------K 166
              +  M    R+  +       K NV+       +L+    E+     +         K
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGK 163

Query: 167 IALFYFADIVLNARNNHCQINFD--WLDEVDDIEYFRKC--PWGLLS--WKMIYESLDNA 220
             +   A  V  +    C+++F   WL+        + C  P  +L    K++Y+ +D  
Sbjct: 164 TWV---ALDVCLSYKVQCKMDFKIFWLN-------LKNCNSPETVLEMLQKLLYQ-IDPN 212

Query: 221 LFEKDEKFKRTRLKNPDHNIEKYNLYGFTSGVQ--VFLNQLWN-------NGDCAV---- 267
              + +     +L+      E   L          + L  + N       N  C +    
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272

Query: 268 -DSLVFDDRLNSYLCGRQHTMSKSMTDVDMPL-----EVIFPRWLEYVGFYNIRP-ELRS 320
               V D            T   S+    M L     + +  ++L      + RP +L  
Sbjct: 273 RFKQVTDFLSA------ATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQDLPR 320

Query: 321 ADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRK--------- 371
                   + + P               ++   +    +    +  + ++          
Sbjct: 321 E------VLTTNP-------------RRLS---IIAESIRDGLATWDNWKHVNCDKLTTI 358

Query: 372 -KIAVD---------------IFNDDI 382
            + +++               +F    
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSA 385

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 43/272 (15%), Positives = 75/272 (27%), Gaps = 117/272 (43%)

Query: 21  HFPGRILSMC---KLSSVVKAIEEKLTKRQLSMLKNDIFGHFLECQSFSFSRVILHNLLL 77
           H P  +LS+     + S V  +  KL K  L           +E Q      + + ++ L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL-----------VEKQPKES-TISIPSIYL 433

Query: 78  RQVAHEEDSRE-------------------------DQLWFQ-IGEHLIRLSIVEWCLVT 111
                 E+                            DQ ++  IG HL  +         
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI--------- 484

Query: 112 GLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFY 171
                        E  ER              +  F  VF + +F     ++  KI    
Sbjct: 485 -------------EHPER--------------MTLFRMVFLDFRF-----LEQ-KIRH-- 509

Query: 172 FADIVLNARNNHCQINFDWLDEVDDIEYFRK-----CPWGLLSWKMIYESLDNALFEKDE 226
                 NA           L+ +  +++++       P         YE L NA+     
Sbjct: 510 -DSTAWNASG-------SILNTLQQLKFYKPYICDNDP--------KYERLVNAI----L 549

Query: 227 KFKRTRLKNPDHNIEKYNLYGFTSGVQVFLNQ 258
            F    L   + N+       +T  +++ L  
Sbjct: 550 DF----LPKIEENLICSK---YTDLLRIALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	384
1th0_A	226	SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE	99.92
2xph_A	238	Sentrin-specific protease 1; hydrolase, cysteine p	99.92
1euv_A	221	ULP1 protease; SUMO hydrolase, ubiquitin-like prot	99.84
2bkr_A	212	Sentrin-specific protease 8; protein-binding-hydro	99.65
3eay_A	323	Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq	99.63
2oix_A	186	Xanthomonas outer protein D; CLAN CE family 48 cys	99.44

>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A

Probab=99.92  E-value=3.6e-26  Score=213.95  Aligned_cols=135  Identities=19%  Similarity=0.288  Sum_probs=108.6

Q ss_pred             cccCCCCCccceecccchhhhhhhhhccccCCCCCCCcccccccceeeeeccceeeccCCCCCCchHHHHHHHHHHHhcc
Q 041329          232 RLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGF  311 (384)
Q Consensus       232 kl~~~~~~~~~y~l~GF~~~Lql~a~e~~p~~~~~v~n~~f~er~I~y~~~~i~~~~DS~g~~~~~~~~~l~~yL~~E~~  311 (384)
                      ++++|++..+.+...-...|++.  ..||.   .+|.+  +.++.|.||        ||||+.+..+.+.|++||..|+ 
T Consensus        90 ~v~~w~~~~~l~~~~~i~iPin~--~~HW~---l~vi~--~~~~~i~~~--------DSl~~~~~~~~~~l~~~l~~e~-  153 (226)
T 1th0_A           90 AVKRWTKGVNLFEQEIILVPIHR--KVHWS---LVVID--LRKKCLKYL--------DSMGQKGHRICEILLQYLQDES-  153 (226)
T ss_dssp             GTGGGGTTCCGGGSSEEEEEEEE--TTEEE---EEEEE--TTTTEEEEE--------CTTCCCCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHhhcCCcccCCEEEEeEEe--CcEEE---EEEEE--cCCCceEEE--------cCCCCCchHHHHHHHHHHHHHH-
Confidence            34555555554444444444443  34666   33322  345555555        9999999999999999999998 


Q ss_pred             cccCCCCCCCCCccccc--ccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCccchHHHHHHHHHHHHcCccc
Q 041329          312 YNIRPELRSADPWKVIA--VKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIV  383 (384)
Q Consensus       312 ~~k~~~~~~~~~W~~~~--~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq~dmp~~R~~m~~Ei~~~~l~  383 (384)
                      .+|++.+++.++|++..  ..++|||.| |+|||||+|+||+++++|.|++|+|+|||++|++|++||++|+|+
T Consensus       154 ~~k~~~~~~~~~w~~~~~~~~~~PqQ~N-g~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~l~  226 (226)
T 1th0_A          154 KTKRNSDLNLLEWTHHSMKPHEIPQQLN-GSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             HHHTSCCCCGGGCEEEECCTTTSCCCCS-SSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             HHhcCCCCCcccceeccccCCCCCCCCC-CCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCCcC
Confidence            99999999999999853  468999999 999999999999999999999999999999999999999999985

>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A

Probab=99.92  E-value=7.3e-26  Score=213.58  Aligned_cols=135  Identities=19%  Similarity=0.382  Sum_probs=111.2

Q ss_pred             cccCCCCCccceecccchhhhhhhhhccccCCCCCCCcccccccceeeeeccceeeccCCCCCCchHHHHHHHHHHHhcc
Q 041329          232 RLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGF  311 (384)
Q Consensus       232 kl~~~~~~~~~y~l~GF~~~Lql~a~e~~p~~~~~v~n~~f~er~I~y~~~~i~~~~DS~g~~~~~~~~~l~~yL~~E~~  311 (384)
                      .+++|+++.+.+..+-...|++.  ..||.   .++.+  +.++.|.||        ||||+.+..+.+.|++||+.|+ 
T Consensus       102 ~v~~w~~~~~l~~~~~i~iPin~--~~HW~---L~vi~--~~~~~i~~~--------DSl~~~~~~~~~~l~~~L~~e~-  165 (238)
T 2xph_A          102 AVKRWTKKVDVFSVDILLVPIHL--GVHWC---LAVVD--FRKKNITYY--------DSMGGINNEACRILLQYLKQES-  165 (238)
T ss_dssp             HHTTTTTTCCGGGSSEEEEEEEE--TTEEE---EEEEE--TTTTEEEEE--------CTTCCCCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHhccCCcccCCEEEEcccC--CCceE---EEEEE--cccceEEEe--------ecccCCCHHHHHHHHHHHHHHH-
Confidence            45566666666555555556554  25666   33332  345556565        9999999999999999999998 


Q ss_pred             cccCCCCCCCCCccccc--ccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCccchHHHHHHHHHHHHcCccc
Q 041329          312 YNIRPELRSADPWKVIA--VKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIV  383 (384)
Q Consensus       312 ~~k~~~~~~~~~W~~~~--~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq~dmp~~R~~m~~Ei~~~~l~  383 (384)
                      .+|+|.+++.++|++..  ..++|||.| |+|||||+|+||+|++++.|++|+|+|||++|++|++||++|+|+
T Consensus       166 ~~k~~~~~~~~~w~~~~~~~~~~PqQ~N-g~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ll  238 (238)
T 2xph_A          166 IDKKRKEFDTNGWQLFSKKSQEIPQQMN-GSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL  238 (238)
T ss_dssp             HHHHCSCCCCTTCEEEECCSSSSCCCSB-GGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             HHhcCCCcCcccceecccCCCCCCCCCC-CCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCCCC
Confidence            88889899999999753  568999999 999999999999999999999999999999999999999999985

>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A

Probab=99.84  E-value=1.8e-21  Score=181.56  Aligned_cols=130  Identities=18%  Similarity=0.271  Sum_probs=96.3

Q ss_pred             ccccCCCC--CccceecccchhhhhhhhhccccCCCCCCCcccccccceeeeeccceeeccCCCCC-Cc---hHHHHHHH
Q 041329          231 TRLKNPDH--NIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDV-DM---PLEVIFPR  304 (384)
Q Consensus       231 ~kl~~~~~--~~~~y~l~GF~~~Lql~a~e~~p~~~~~v~n~~f~er~I~y~~~~i~~~~DS~g~~-~~---~~~~~l~~  304 (384)
                      ..+++|++  +.+.+..+-...|++.- ..||.   .++.+  +.++.|.||        ||||+. +.   .+++.|++
T Consensus        85 ~~v~rw~~~~~~~~~~~~~i~iPin~~-~~HW~---l~vi~--~~~~~i~~~--------DSl~~~~~~~~~~i~~~l~~  150 (221)
T 1euv_A           85 QGVRRWMKRKKTQIDKLDKIFTPINLN-QSHWA---LGIID--LKKKTIGYV--------DSLSNGPNAMSFAILTDLQK  150 (221)
T ss_dssp             GGTTTTTGGGTSCGGGCSEEEEEEEET-TTEEE---EEEEE--TTTTEEEEE--------CSSCCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCcccCCEEEEEEEcC-CCeEE---EEEEE--cCCCEEEEE--------ecCCCCCcchHHHHHHHHHH
Confidence            34556665  33444444444454431 24666   33322  345556666        999965 33   47889999


Q ss_pred             HHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCccchHHHHHHHHHHHHcCcc
Q 041329          305 WLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDI  382 (384)
Q Consensus       305 yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq~dmp~~R~~m~~Ei~~~~l  382 (384)
                      ||.+|+ .++.+.     +|.+. ..++|||.| |+|||||+|+||+|+++|.|++|+|+||+.+|++|+.+|+++.|
T Consensus       151 ~l~~e~-~~~~~~-----~~~~~-~~~~PqQ~N-~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~l  220 (221)
T 1euv_A          151 YVMEES-KHTIGE-----DFDLI-HLDCPQQPN-GYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             HHHHHT-TSSSCT-----TCEEE-EECCCCCSS-SSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHH-HHhcCC-----CceEe-ecCCCCCCC-CcCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhccC
Confidence            999998 777654     45544 458999999 99999999999999999999999999999999999999999876

>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A

Probab=99.65  E-value=2.1e-17  Score=152.77  Aligned_cols=84  Identities=17%  Similarity=0.077  Sum_probs=66.5

Q ss_pred             eccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCC--------C
Q 041329          287 MSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGL--------R  358 (384)
Q Consensus       287 ~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~--------~  358 (384)
                      +|||||+.+....+.+.++|.... ..+..      .|.+. ..++|||.| |+|||||+|+||++++++.        +
T Consensus       117 ~~DSl~~~n~~~~~~l~~~l~~~l-~~~~~------~~~~~-~~~~PqQ~N-~~DCGvfvl~~~~~l~~~~~~~~~~~~~  187 (212)
T 2bkr_A          117 HYDSHSRSNSVHAKQVAEKLEAFL-GRKGD------KLAFV-EEKAPAQQN-SYDCGMYVICNTEALCQNFFRQQTESLL  187 (212)
T ss_dssp             EECSSTTTTHHHHHHHHHHHHHHH-SCTTC------CCCEE-ECCCCCCSS-SSTHHHHHHHHHHHHHHHHHSCCCCCHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHh-CCccc------cceEe-ECCCCCCCC-CCcHHHHHHHHHHHHHHHhhhcCccccc
Confidence            449999999988766666666654 22211      34443 468999999 9999999999999999985        2


Q ss_pred             cccCccchHHHHHHHHHHHHc
Q 041329          359 LEFNASHVEYFRKKIAVDIFN  379 (384)
Q Consensus       359 ~~Fsq~dmp~~R~~m~~Ei~~  379 (384)
                      ..|++++|+.+|++|..+|.+
T Consensus       188 ~~~~~~~i~~~R~~i~~lI~~  208 (212)
T 2bkr_A          188 QLLTPAYITKKRGEWKDLIAT  208 (212)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHH
Confidence            459999999999999998864

>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}

Probab=99.63  E-value=2.7e-16  Score=154.22  Aligned_cols=90  Identities=17%  Similarity=0.153  Sum_probs=74.5

Q ss_pred             eeccCCCCC-CchHHHHHHHHHHHhcccccCC--CCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccC
Q 041329          286 TMSKSMTDV-DMPLEVIFPRWLEYVGFYNIRP--ELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFN  362 (384)
Q Consensus       286 ~~~DS~g~~-~~~~~~~l~~yL~~E~~~~k~~--~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fs  362 (384)
                      .+|||||+. +..+++.|++||++|+ ++|++  .+++.+.|.... .++|||.| |+|||||+|+||++++++.+++|+
T Consensus       209 l~lDSL~~~~~~~~~~~Lr~YL~~E~-~~k~~~~~~f~~~~~~~~~-~~~P~Q~N-~~DCGvfvl~~~e~~~~~~~~~f~  285 (323)
T 3eay_A          209 LILDSLKAASVQNTVQNLREYLEVEW-EVKLKTHRQFSKTNMVDLC-PKVPKQDN-SSDCGVYLLQYVESFFKDPIVNFE  285 (323)
T ss_dssp             EEECSSCCSSHHHHHHHHHHHHHHHH-HHHHSSCCCCCTTTSCEEC-CBCCCCCS-TTCHHHHHHHHHHHHHHSCCCCCC
T ss_pred             EEEECCCCCCcchHHHHHHHHHHHHH-HhhcCCCcCCCHhHceecc-CCCCCcCC-CCcHHHHHHHHHHHHHhCCccccc
Confidence            577999996 5889999999999999 88865  456666787654 46999999 999999999999999999987765


Q ss_pred             c----------cchHHHHHHHHHHHH
Q 041329          363 A----------SHVEYFRKKIAVDIF  378 (384)
Q Consensus       363 q----------~dmp~~R~~m~~Ei~  378 (384)
                      |          ++|...|..|..-|.
T Consensus       286 ~~~~~~~wf~~~~i~~kR~ei~~LI~  311 (323)
T 3eay_A          286 LPIHLEKWFPRHVIKTKREDIRELIL  311 (323)
T ss_dssp             SSCBCTTSSCHHHHHTHHHHHHHHHH
T ss_pred             cccccccCCCHHHHHHHHHHHHHHHH
Confidence            4          578888888766554

>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A

Probab=99.44  E-value=7.2e-14  Score=127.07  Aligned_cols=107  Identities=14%  Similarity=0.009  Sum_probs=68.8

Q ss_pred             hhhhhhhhhccccCCCCCCCcccccccce---eeeeccceeeccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcc
Q 041329          249 TSGVQVFLNQLWNNGDCAVDSLVFDDRLN---SYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWK  325 (384)
Q Consensus       249 ~~~Lql~a~e~~p~~~~~v~n~~f~er~I---~y~~~~i~~~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~  325 (384)
                      ..|++. ...||.   .+|.+  ..++.+   .||        ||||+.+.. .+.+.+.|...-  +.   +    ..+
T Consensus        66 ~iPin~-~~~HWs---Llvi~--~~~~~~~~~~~~--------DSl~~~~~~-~~~l~~~l~~~l--~~---~----~~~  121 (186)
T 2oix_A           66 FLPINQ-PNAHWS---LLVVD--RRNKDAVAAYHY--------DSMAQKDPQ-QRYLADMAAYHL--GL---D----YQQ  121 (186)
T ss_dssp             EEEEEE-TTTEEE---EEEEE--CSSTTSCEEEEE--------CCCSSCCHH-HHHHHHHHHHHT--TC---C----GGG
T ss_pred             EEEEeC-CCCccE---EEEEE--CCCCeeeeeEEE--------cCCCCCCHH-HHHHHHHHHHHh--CC---C----ccc
Confidence            345554 234777   44332  344555   555        999997664 344444444332  11   1    111


Q ss_pred             cccccCCCCCCCCCCCchhHHHHHHHHHhcC-------CCcccCccchHHHHHHHHHHHHcCc
Q 041329          326 VIAVKSAPQQEPGTGDCGVFVLMVTMYLMFG-------LRLEFNASHVEYFRKKIAVDIFNDD  381 (384)
Q Consensus       326 ~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~-------~~~~Fsq~dmp~~R~~m~~Ei~~~~  381 (384)
                      + ...++|||.| |+|||||+|+||+++++.       .+-.|+++++...|+.|...|.+.+
T Consensus       122 ~-~~~~~PqQ~N-g~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~~  182 (186)
T 2oix_A          122 T-HEMPIAIQSD-GYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQAE  182 (186)
T ss_dssp             C-EEECBCCCC---CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC-
T ss_pred             c-ccCCCCCCCC-CCCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhcc
Confidence            2 2458999999 999999999999999864       2334899999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	384
d2iy1a1	225	d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H	3e-07
d1euva_	221	d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake	8e-07
d1th0a_	226	d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H	1e-06

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 3e-07
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 297 PLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFG 356
              ++     +       +    +         +  PQQ  G+ D G+F       +   
Sbjct: 141 ACRILLQYLKQESIDKKRKEFDTNGWQLFSKKSQEIPQQMNGS-DAGMFACKYADCITKD 199

Query: 357 LRLEFNASHVEYFRKKIAVDIFN 379
             + F   H+ YFRK++  +I +
Sbjct: 200 RPINFTQQHMPYFRKRMVWEILH 222

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.1 bits (111), Expect = 8e-07
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 322 DPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDD 381
           + + +I     PQQ  G  DCG++V M T+Y      L+F+       R+ IA  I  D 
Sbjct: 162 EDFDLI-HLDCPQQPNGY-DCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDA 219

Query: 382 I 382
           +
Sbjct: 220 L 220

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 324 WKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFN 379
              +     PQQ  G+ DCG+F      Y+     + F    +  FRKK+  +I +
Sbjct: 168 HHSMKPHEIPQQLNGS-DCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILH 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	384
d2iy1a1	225	Sentrin-specific protease 1 {Human (Homo sapiens)	99.83
d1th0a_	226	Sentrin-specific protease 2, SENP2 {Human (Homo sa	99.82
d1euva_	221	Ulp1 protease C-terminal domain {Baker's yeast (Sa	99.8
d2bkra1	212	Sentrin-specific protease 8, SENP8 {Human (Homo sa	99.37

>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-21  Score=178.15  Aligned_cols=94  Identities=19%  Similarity=0.373  Sum_probs=87.5

Q ss_pred             eccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCccccc--ccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCcc
Q 041329          287 MSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIA--VKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNAS  364 (384)
Q Consensus       287 ~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~--~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq~  364 (384)
                      +||||++.+......+.++|..++ .++.+..++..+|+...  ..++|||.| |+|||||+|+||+|++.|.+++|+|+
T Consensus       130 ~~DSl~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~pqQ~N-g~DCGvfvl~~~~~~~~~~~~~~~q~  207 (225)
T d2iy1a1         130 YYDSMGGINNEACRILLQYLKQES-IDKKRKEFDTNGWQLFSKKSQEIPQQMN-GSDAGMFACKYADCITKDRPINFTQQ  207 (225)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHHHH-HHHHSSCCCCTTCEEEECCTTTSCCCCS-SSTHHHHHHHHHHHHHTTCCCCCCGG
T ss_pred             EEecCCCCchHHHHHHHHHHHHHH-HHhccCccCcccceecccccccCCCCCC-CCChHHHHHHHHHHHhCCCCCCcCHH
Confidence            459999999999999999999998 88888889889998643  468999999 99999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCcc
Q 041329          365 HVEYFRKKIAVDIFNDDI  382 (384)
Q Consensus       365 dmp~~R~~m~~Ei~~~~l  382 (384)
                      ||+.+|++|+.||++++|
T Consensus       208 ~~~~~R~~~~~~l~~~~l  225 (225)
T d2iy1a1         208 HMPYFRKRMVWEILHRKL  225 (225)
T ss_dssp             GHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhCcC
Confidence            999999999999999986

>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 2, SENP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.4e-21  Score=176.33  Aligned_cols=96  Identities=21%  Similarity=0.318  Sum_probs=87.1

Q ss_pred             eeccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCccccc--ccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCc
Q 041329          286 TMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIA--VKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNA  363 (384)
Q Consensus       286 ~~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~--~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq  363 (384)
                      .+|||+++.+......++.||.++. ..+++...+...|+...  ..++|||.| |+|||||+|+||+|++.+.+++|+|
T Consensus       129 ~~~DSl~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~pqQ~N-~~DCGvfvl~~~~~~~~~~~~~~tq  206 (226)
T d1th0a_         129 KYLDSMGQKGHRICEILLQYLQDES-KTKRNSDLNLLEWTHHSMKPHEIPQQLN-GSDCGMFTCKYADYISRDKPITFTQ  206 (226)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHHHH-HHHTSCCCCGGGCEEEECCTTTSCCCCS-SSCHHHHHHHHHHHHTTTCCCCCCG
T ss_pred             EEeccccCCChHHHHHHHHHHHHHH-HHhhCCCcCcccceeeeeccCCCCCCCC-CCCHHHHHHHHHHHHhCCCCCCcCH
Confidence            3569999999999999999999998 88887777777776543  468999999 9999999999999999999999999


Q ss_pred             cchHHHHHHHHHHHHcCccc
Q 041329          364 SHVEYFRKKIAVDIFNDDIV  383 (384)
Q Consensus       364 ~dmp~~R~~m~~Ei~~~~l~  383 (384)
                      +||+.+|++|+.||++++|+
T Consensus       207 ~di~~~R~~i~~el~~~~l~  226 (226)
T d1th0a_         207 HQMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             GGHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999985

>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=2.7e-20  Score=171.13  Aligned_cols=88  Identities=23%  Similarity=0.308  Sum_probs=75.3

Q ss_pred             eccCCCCCCch----HHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccC
Q 041329          287 MSKSMTDVDMP----LEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFN  362 (384)
Q Consensus       287 ~~DS~g~~~~~----~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fs  362 (384)
                      +||||++.+..    +++.|++|+.+|+ ..+.+.     +|... ..++|||.| |+|||||+|+||+|++.|.+++|+
T Consensus       129 ~~DSl~~~~~~~~~~i~~~l~~~l~~~~-~~~~~~-----~~~~~-~~~~PqQ~N-~~DCGvfvl~~~~~~~~~~~~~~~  200 (221)
T d1euva_         129 YVDSLSNGPNAMSFAILTDLQKYVMEES-KHTIGE-----DFDLI-HLDCPQQPN-GYDCGIYVCMNTLYGSADAPLDFD  200 (221)
T ss_dssp             EECSSCCSCCHHHHHHHHHHHHHHHHHT-TSSSCT-----TCEEE-EECCCCCSS-SSTHHHHHHHHHHHHHTTCCCCCC
T ss_pred             eeccccCCCcHHHHHHHHHHHHHHHHHH-HhhcCC-----CCeee-eccCCCCCC-CCChHHHHHHHHHHHhCCCCCccC
Confidence            34999987766    5678889999998 666554     34443 447899999 999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHHHcCcc
Q 041329          363 ASHVEYFRKKIAVDIFNDDI  382 (384)
Q Consensus       363 q~dmp~~R~~m~~Ei~~~~l  382 (384)
                      |+||+.+|++|+.||+++.|
T Consensus       201 q~d~~~~R~~i~~~il~~~l  220 (221)
T d1euva_         201 YKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             HHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999875

>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Sentrin-specific protease 8, SENP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.9e-13  Score=123.26  Aligned_cols=85  Identities=18%  Similarity=0.091  Sum_probs=66.3

Q ss_pred             eeccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCC----C---
Q 041329          286 TMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGL----R---  358 (384)
Q Consensus       286 ~~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~----~---  358 (384)
                      .+|||+|+.+....+.+.++|.++. . ..+     ..+.. ...++|||.| |+|||||+|+||++++++.    .   
T Consensus       116 ~~~DSl~~~~~~~~~~~~~~l~~~~-~-~~~-----~~~~~-~~~~~p~Q~N-~~DCGvfv~~~~~~l~~~~~~~~~~~~  186 (212)
T d2bkra1         116 FHYDSHSRSNSVHAKQVAEKLEAFL-G-RKG-----DKLAF-VEEKAPAQQN-SYDCGMYVICNTEALCQNFFRQQTESL  186 (212)
T ss_dssp             EEECSSTTTTHHHHHHHHHHHHHHH-S-CTT-----CCCCE-EECCCCCCSS-SSTHHHHHHHHHHHHHHHHHSCCCCCH
T ss_pred             EEecCCCcCCHHHHHHHHHHHHHHh-c-ccc-----Cceee-eecccCCCCC-CCChHHHHHHHHHHHHHhcccccchhh
Confidence            3569999999999999999999886 2 222     12323 2457999999 9999999999999997532    1   


Q ss_pred             -cccCccchHHHHHHHHHHHHc
Q 041329          359 -LEFNASHVEYFRKKIAVDIFN  379 (384)
Q Consensus       359 -~~Fsq~dmp~~R~~m~~Ei~~  379 (384)
                       ..+++++|+.+|+.|...|..
T Consensus       187 ~~~~~~~~i~~~R~~l~~lI~~  208 (212)
T d2bkra1         187 LQLLTPAYITKKRGEWKDLIAT  208 (212)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHHH
Confidence             127899999999999877753