Citrus Sinensis ID: 041344

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLLHNPIYTL
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccEEEcccccccccccccEEEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccEEEEcccccccccccccEEEEEEcccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccc
Coil and Loop (DISEMBL)
trrneptvkgtitfdenstiaispvnfhglpkydgccfyigtpqkkdyflcaetpGAARAWVSTLHAAQLVLKAHKEAVNslsgngsaklGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTmtnritdgpmddlsIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCgllhnpiytl
Flexible Loop (DISEMBL)
trrneptvkgtitfdenstiaiSPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLardlrardstIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLLHNPIYTL
Low Complexity Region (SEG)
TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGtvatvvaaanstaQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLsetaeaaeaaasaaHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLLHNPIYTL
Disordered region (IsUnstruct)
**********TITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAAN*********IEAAMQISLRNALGTM*********************************************************************IACAEIERINKESTKQLETCVLKVNFSQLFCGLLHNPIY**
Disordered Region (DISOPRED)
******T****ITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKA************SAKLGTVATVVAAANSTAQECSKEIEAA**********************DLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSE*************TMDEQRRIAC************************QLFCGLLHNPIYTL
Disordered Region (DISEMBL)
*********GTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSE*****************QRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLLHNPIYTL
Disordered Region (DISPRO)
******TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTN*ITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLLHNPIYTL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMxxxxxxxxxxxxxxxxxxxxxDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLLHNPIYTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
255558688	499	conserved hypothetical protein [Ricinus	0.927	0.438	0.885	1e-104
356501455	490	PREDICTED: uncharacterized protein LOC10	0.966	0.465	0.864	1e-103
356553844	490	PREDICTED: uncharacterized protein LOC10	0.936	0.451	0.877	1e-102
224082584	501	predicted protein [Populus trichocarpa]	0.927	0.437	0.863	1e-101
225446797	500	PREDICTED: uncharacterized protein LOC10	0.923	0.436	0.848	1e-100
357494193	492	hypothetical protein MTR_5g091000 [Medic	0.923	0.443	0.871	2e-99
224066555	501	predicted protein [Populus trichocarpa]	0.966	0.455	0.847	4e-99
449460032	490	PREDICTED: uncharacterized protein LOC10	0.923	0.444	0.830	8e-96
449502140	487	PREDICTED: uncharacterized protein LOC10	0.923	0.447	0.830	8e-96
42570991	381	Pleckstrin homology (PH) domain-containi	0.902	0.559	0.802	2e-92

>gi|255558688|ref|XP_002520368.1| conserved hypothetical protein [Ricinus communis] gi|223540415|gb|EEF41984.1| conserved hypothetical protein [Ricinus communis]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/219 (88%), Positives = 207/219 (94%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           TRRNEP +KGTI FD NSTI +SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA
Sbjct: 65  TRRNEPAIKGTIIFDANSTITVSPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 124

Query: 61  WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR 120
           WV+TLHA QLVLKAHKEAVNSLSG GSAKLGTVATVVAAANSTA ECSKEIEAAMQISLR
Sbjct: 125 WVATLHATQLVLKAHKEAVNSLSGTGSAKLGTVATVVAAANSTALECSKEIEAAMQISLR 184

Query: 121 NALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA 180
           NALG + NRITDGPMDDL+IMKETL+VKDEELQNLARDLRARDSTIR+IADKLSETAEAA
Sbjct: 185 NALGMVNNRITDGPMDDLAIMKETLKVKDEELQNLARDLRARDSTIREIADKLSETAEAA 244

Query: 181 EAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKV 219
           EAAASAAHTMDEQRRIACAEIER++K S KQL++ +LK+
Sbjct: 245 EAAASAAHTMDEQRRIACAEIERLSKASQKQLDSSLLKL 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501455|ref|XP_003519540.1| PREDICTED: uncharacterized protein LOC100820315 [Glycine max]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 197/228 (86%), Positives = 206/228 (90%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNEP+VKGTI FD NSTI ISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW
Sbjct: 63  RRNEPSVKGTIIFDANSTITISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 122

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGS KLGTVATVVAAANSTA ECSKEIEAAMQISLRN
Sbjct: 123 VSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTALECSKEIEAAMQISLRN 182

Query: 122 ALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAE 181
           ALG M NR TDGPMDDL+IMKETLRVKDEELQNL+RDLRARDSTI+DIADKLSETAEAAE
Sbjct: 183 ALGMMNNRTTDGPMDDLTIMKETLRVKDEELQNLSRDLRARDSTIKDIADKLSETAEAAE 242

Query: 182 AAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLL 229
           AAASAA+TMDE RRIACAEIER+NK+S KQ E    K+  S+   G L
Sbjct: 243 AAASAAYTMDEHRRIACAEIERLNKDSEKQQELFTQKLKESEEKIGGL 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553844|ref|XP_003545261.1| PREDICTED: uncharacterized protein LOC100792926 [Glycine max]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/221 (87%), Positives = 202/221 (91%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNEP+VKGTI FD NSTI ISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW
Sbjct: 63  RRNEPSVKGTIIFDANSTITISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 122

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGS KLGTVATVVAAANSTA ECSKEIEAAMQISLRN
Sbjct: 123 VSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTALECSKEIEAAMQISLRN 182

Query: 122 ALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAE 181
           ALG M NR TDGPMDDL+IMKETLRVKDEELQNL+RDLRARDSTI+DIADKLSETAEAAE
Sbjct: 183 ALGMMNNRTTDGPMDDLTIMKETLRVKDEELQNLSRDLRARDSTIKDIADKLSETAEAAE 242

Query: 182 AAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFS 222
           AAASAA+TMDE RRIACAEIER+N +S KQ E    K+  S
Sbjct: 243 AAASAAYTMDEHRRIACAEIERLNNDSEKQQELFTQKLKES 283

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082584|ref|XP_002306753.1| predicted protein [Populus trichocarpa] gi|222856202|gb|EEE93749.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 189/219 (86%), Positives = 205/219 (93%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           TRRNEP +KGTI FD NSTIA+SPVNF+GLPKYDGCCFYIGTPQ+KDYFLCAETPGAARA
Sbjct: 66  TRRNEPALKGTILFDANSTIAVSPVNFNGLPKYDGCCFYIGTPQRKDYFLCAETPGAARA 125

Query: 61  WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR 120
           WV+TLHA QLVLKAHKEAV+SLSGNGSAKLGTVATVVAAANSTA ECSKEIEAAMQISLR
Sbjct: 126 WVATLHATQLVLKAHKEAVDSLSGNGSAKLGTVATVVAAANSTALECSKEIEAAMQISLR 185

Query: 121 NALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA 180
           NALG M NR TDGPMDD +I+KETLRVKDEELQNLARD+RARDS I+DIADKLSETAEAA
Sbjct: 186 NALGMMNNRTTDGPMDDKTILKETLRVKDEELQNLARDIRARDSIIKDIADKLSETAEAA 245

Query: 181 EAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKV 219
           EAAAS+AHTMDEQRRI CAEIER++K S KQLE+ +LK+
Sbjct: 246 EAAASSAHTMDEQRRIVCAEIERLSKASEKQLESSMLKL 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446797|ref|XP_002283267.1| PREDICTED: uncharacterized protein LOC100254120 [Vitis vinifera] gi|302143523|emb|CBI22084.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/218 (84%), Positives = 202/218 (92%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNE  VKGTI FD  STI +SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW
Sbjct: 66  RRNEVAVKGTIIFDAYSTITLSPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 125

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTA ECSKEIEAAMQIS+RN
Sbjct: 126 VSTLHATQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTALECSKEIEAAMQISMRN 185

Query: 122 ALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAE 181
           ALG M N+ +DGPMDDL+IMKETLRVKDEELQ+LARDLRARDSTI++IA+KLS+TAEAAE
Sbjct: 186 ALGVMMNKTSDGPMDDLTIMKETLRVKDEELQHLARDLRARDSTIKEIAEKLSDTAEAAE 245

Query: 182 AAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKV 219
           AAA AAHTMDEQRR+ACAEI+R+ K+S KQL + +LK+
Sbjct: 246 AAALAAHTMDEQRRMACAEIDRLRKDSEKQLGSSMLKL 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494193|ref|XP_003617385.1| hypothetical protein MTR_5g091000 [Medicago truncatula] gi|355518720|gb|AET00344.1| hypothetical protein MTR_5g091000 [Medicago truncatula]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 190/218 (87%), Positives = 199/218 (91%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNEPTVKGTI FD NSTI +SPVNF+GLPKYDGCC YIGTPQKKDYFLCAETPGAARAW
Sbjct: 63  RRNEPTVKGTILFDANSTITVSPVNFNGLPKYDGCCIYIGTPQKKDYFLCAETPGAARAW 122

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGS KLGTVATVVAAANSTA ECSKEIEAAMQISLRN
Sbjct: 123 VSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTASECSKEIEAAMQISLRN 182

Query: 122 ALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAE 181
           ALG M NR TDGPMDDL+IMKETLRVKDEELQNLARDLRARDSTI +IADKLSETAEAAE
Sbjct: 183 ALGMMPNRTTDGPMDDLTIMKETLRVKDEELQNLARDLRARDSTITEIADKLSETAEAAE 242

Query: 182 AAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKV 219
           AAASAA+TMDEQRRI CAEIER+ K+S KQ +    K+
Sbjct: 243 AAASAAYTMDEQRRIVCAEIERLRKDSEKQQQVYAQKL 280

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066555|ref|XP_002302134.1| predicted protein [Populus trichocarpa] gi|222843860|gb|EEE81407.1| predicted protein [Populus trichocarpa]

 Score =  366 bits (939), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/229 (84%), Positives = 206/229 (89%), Gaps = 1/229 (0%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           TRRNEP VKGTI FD NSTI  SPVNFHGLPKYDGCCFYIGTPQK DYFLCAETPGAARA
Sbjct: 66  TRRNEPAVKGTIIFDANSTITASPVNFHGLPKYDGCCFYIGTPQKNDYFLCAETPGAARA 125

Query: 61  WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR 120
           WV+TLHA QLVLKAHKEAV+SLSG+GSAKLGTVA VVAAANS AQECSKEIEAAMQISLR
Sbjct: 126 WVATLHATQLVLKAHKEAVDSLSGSGSAKLGTVAAVVAAANSIAQECSKEIEAAMQISLR 185

Query: 121 NALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA 180
           NALG M NRI DGPMDDL+IMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA
Sbjct: 186 NALGMMNNRIIDGPMDDLTIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA 245

Query: 181 EAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKV-NFSQLFCGL 228
           E AASAAH MDEQRRIAC+EIER++K S KQLE+ +LK+ +F +    L
Sbjct: 246 ETAASAAHIMDEQRRIACSEIERLSKASEKQLESSMLKLKDFEEKIVAL 294

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460032|ref|XP_004147750.1| PREDICTED: uncharacterized protein LOC101215308 [Cucumis sativus]

 Score =  355 bits (911), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 181/218 (83%), Positives = 197/218 (90%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNE T+KG+I FD NS I +SPVNFHGLPKYDGCC YIGTPQK+DYFLCAETPGAARAW
Sbjct: 66  RRNEATIKGSIIFDANSNITVSPVNFHGLPKYDGCCIYIGTPQKQDYFLCAETPGAARAW 125

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQE SKEIE AMQISLRN
Sbjct: 126 VSTLHATQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQESSKEIERAMQISLRN 185

Query: 122 ALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAE 181
            LG + N+ TDG MDDL+IMKETLRVKDEELQNLARDLRARDSTI DIA+KLSETAEAAE
Sbjct: 186 TLGIIANKATDGQMDDLAIMKETLRVKDEELQNLARDLRARDSTINDIAEKLSETAEAAE 245

Query: 182 AAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKV 219
           AAASAAH MD+QR+I CAEI+RI ++S KQL+  +LK+
Sbjct: 246 AAASAAHMMDKQRKIVCAEIQRIKEDSEKQLDASILKL 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502140|ref|XP_004161554.1| PREDICTED: uncharacterized protein LOC101223787 [Cucumis sativus]

 Score =  355 bits (911), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 181/218 (83%), Positives = 197/218 (90%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNE T+KG+I FD NS I +SPVNFHGLPKYDGCC YIGTPQK+DYFLCAETPGAARAW
Sbjct: 66  RRNEATIKGSIIFDANSNITVSPVNFHGLPKYDGCCIYIGTPQKQDYFLCAETPGAARAW 125

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQE SKEIE AMQISLRN
Sbjct: 126 VSTLHATQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQESSKEIERAMQISLRN 185

Query: 122 ALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAE 181
            LG + N+ TDG MDDL+IMKETLRVKDEELQNLARDLRARDSTI DIA+KLSETAEAAE
Sbjct: 186 TLGIIANKATDGQMDDLAIMKETLRVKDEELQNLARDLRARDSTINDIAEKLSETAEAAE 245

Query: 182 AAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKV 219
           AAASAAH MD+QR+I CAEI+RI ++S KQL+  +LK+
Sbjct: 246 AAASAAHMMDKQRKIVCAEIQRIKEDSEKQLDASILKL 283

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570991|ref|NP_973569.1| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] gi|330253358|gb|AEC08452.1| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana]

 Score =  344 bits (882), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 171/213 (80%), Positives = 190/213 (89%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           TRRNEPT+KGTI FDENSTI+ISPVNF GLPKY+GCC YIGTPQKKDYFLCAETPGAA+A
Sbjct: 66  TRRNEPTIKGTILFDENSTISISPVNFQGLPKYNGCCIYIGTPQKKDYFLCAETPGAAKA 125

Query: 61  WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR 120
           WV+TLHA QLVLKAHKEAV SLSG+GSA LGTVATVVAAANSTA ECS+EI+AAMQISLR
Sbjct: 126 WVTTLHATQLVLKAHKEAVESLSGSGSATLGTVATVVAAANSTALECSREIQAAMQISLR 185

Query: 121 NALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA 180
           NAL    N+  DGP+DDL+IMKETLRVKDEEL NLAR+LR+RDS I++IADKLSETAEAA
Sbjct: 186 NALKITPNKPIDGPLDDLTIMKETLRVKDEELHNLARELRSRDSMIKEIADKLSETAEAA 245

Query: 181 EAAASAAHTMDEQRRIACAEIERINKESTKQLE 213
            AAASAAHTMDEQR+I C E ER+  +S +Q E
Sbjct: 246 VAAASAAHTMDEQRKIVCVEFERLTTDSQRQQE 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
TAIR|locus:2052831	504	SWAP70 [Arabidopsis thaliana (	0.927	0.434	0.671	3.1e-76

TAIR|locus:2052831 SWAP70 [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 147/219 (67%), Positives = 167/219 (76%)

Query:     1 TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
             TRRNEPT+KGTI FDENSTI+ISPVNF GLPKY+GCC YIGTPQKKDYFLCAETPGAA+A
Sbjct:    66 TRRNEPTIKGTILFDENSTISISPVNFQGLPKYNGCCIYIGTPQKKDYFLCAETPGAAKA 125

Query:    61 WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGXXXXXXXXXXXXXQECSKEIEAAMQISLR 120
             WV+TLHA QLVLKAHKEAV SLSG+GSA LG              ECS+EI+AAMQISLR
Sbjct:   126 WVTTLHATQLVLKAHKEAVESLSGSGSATLGTVATVVAAANSTALECSREIQAAMQISLR 185

Query:   121 NALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLXXXXXXX 180
             NAL    N+  DGP+DDL+IMKETLRVKDEEL NLAR+LR+RDS I++IADKL       
Sbjct:   186 NALKITPNKPIDGPLDDLTIMKETLRVKDEELHNLARELRSRDSMIKEIADKLSETAEAA 245

Query:   181 XXXXXXXHTMDEQRRIACAEIERINKESTKQLETCVLKV 219
                    HTMDEQR+I C E ER+  +S +Q E   LK+
Sbjct:   246 VAAASAAHTMDEQRKIVCVEFERLTTDSQRQQEATKLKL 284


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       209   0.00079  112 3  11 22  0.36    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.50u 0.14s 16.64t   Elapsed:  00:00:01
  Total cpu time:  16.50u 0.14s 16.64t   Elapsed:  00:00:01
  Start:  Fri May 10 08:35:10 2013   End:  Fri May 10 08:35:11 2013

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_V000477 hypothetical protein (501 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	236
smart00233	102	smart00233, PH, Pleckstrin homology domain	8e-04
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	0.001
pfam00169	101	pfam00169, PH, PH domain	0.001

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 12/34 (35%), Positives = 14/34 (41%)

Query: 36  CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69
            CF I T  +K   L AE+      WV  L  A 
Sbjct: 68  HCFEIKTSDRKTLLLQAESEEEREKWVEALRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 3  RNEPTVKGTITFDENSTIAISPVNFHGLPKY--DGCCFYIGTPQKKDYFLCAETPGAARA 60
          + +   KG I   E  ++        G PK    G  F + T  K+ Y+  A +  AA+ 
Sbjct: 39 KEDTKCKGVIDLQEVESVYP-DTPSIGAPKSPDPGAFFELKTN-KRVYYFLAPSAEAAQQ 96

Query: 61 WV 62
          W+
Sbjct: 97 WI 98

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 9   KGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
           KG+I       +   P +  G  K    CF I T  ++ + L AE+    + WV  + +A
Sbjct: 44  KGSIPLSG-CQVTKVPDSEDGKRKN---CFEIRTGDRETFLLQAESEEERKEWVKAIRSA 99

Query: 69  Q 69
            
Sbjct: 100 I 100

PH stands for pleckstrin homology. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	98.35
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	98.04
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	97.92
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	97.85
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	97.72
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	97.69
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	97.69
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	97.68
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	97.67
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	97.24
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	97.23
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	97.17
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	97.06
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	97.02
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	96.76
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	96.34
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	96.26
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	95.5
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	95.26
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	95.2
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	95.19
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	94.61
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	94.27
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	91.62
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	90.76
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	90.11
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	88.3
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	87.04
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	83.18
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	82.32
PF10824	100	DUF2580: Protein of unknown function (DUF2580); In	81.72

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=98.35  E-value=2.1e-06  Score=61.52  Aligned_cols=63  Identities=24%  Similarity=0.416  Sum_probs=46.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCc-c-ceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKY-D-GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kY-D-gCCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      .+|..++|+|.++...+|.+..-+. +.|+. + .|||-|-| .++.||||||++..+..|+..|+.
T Consensus        35 ~~~~~~~g~I~L~~~~~v~~~~~~~-~~~~~~~~~~~f~i~t-~~r~~~~~a~s~~e~~~Wi~ai~~   99 (101)
T cd01235          35 FEDTAEKGCIDLAEVKSVNLAQPGM-GAPKHTSRKGFFDLKT-SKRTYNFLAENINEAQRWKEKIQQ   99 (101)
T ss_pred             CCCCccceEEEcceeEEEeecCCCC-CCCCCCCCceEEEEEe-CCceEEEECCCHHHHHHHHHHHHh
Confidence            3567899999999888777643332 33432 2 34555544 578999999999999999999975

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=98.04  E-value=2.3e-05  Score=59.07  Aligned_cols=63  Identities=16%  Similarity=0.339  Sum_probs=45.8

Q ss_pred             CCCCCcceeEEeecCce---eee-eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENST---IAI-SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~ST---iti-SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+|..++|.|.++....   |.. .|-...+   --.+||-|.|| .+.|+|+|||+...+.|+..|+.+.
T Consensus        34 ~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~---~~~~~F~i~t~-~Rty~l~a~s~~e~~~Wi~ai~~v~  100 (103)
T cd01251          34 PLDAFAKGEVFLGSQEDGYEVREGLPPGTQG---NHWYGVTLVTP-ERKFLFACETEQDRREWIAAFQNVL  100 (103)
T ss_pred             CCCcCcCcEEEeeccccceeEeccCCccccc---cccceEEEEeC-CeEEEEECCCHHHHHHHHHHHHHHh
Confidence            45788999999987543   322 1222222   12349999999 7899999999999999999887543

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=97.92  E-value=5.5e-05  Score=51.03  Aligned_cols=64  Identities=28%  Similarity=0.494  Sum_probs=54.9

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      +..++|.|.++.. +|.-.+-.-.+..+-...||.|-+|..+.|+|+++|+...+.|+..|+.+.
T Consensus        40 ~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   40 DSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             ESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            5678899999888 777766665556777889999999999999999999999999999998764

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=97.85  E-value=2.6e-05  Score=54.17  Aligned_cols=33  Identities=21%  Similarity=0.570  Sum_probs=30.4

Q ss_pred             cceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus        34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      ..+||.|.||. +.|+|||+|......|+..|+.
T Consensus        61 ~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          61 RRFCFEVISPT-KTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             CceEEEEEcCC-cEEEEECCCHHHHHHHHHHHhc
Confidence            47899999999 8999999999999999999864

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=97.72  E-value=0.0001  Score=54.83  Aligned_cols=61  Identities=16%  Similarity=0.270  Sum_probs=46.4

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      +|..+.|+|.++ +.+|..+|-.-..  .-..+||.|.||. +.|+|||+++.....|+.-|++.
T Consensus        37 ~~~~~~~~I~L~-~~~v~~~~~~~~~--~~~~~~F~I~t~~-rt~~~~A~s~~e~~~Wi~ai~~~   97 (100)
T cd01233          37 KDPVERGVINLS-TARVEHSEDQAAM--VKGPNTFAVCTKH-RGYLFQALSDKEMIDWLYALNPL   97 (100)
T ss_pred             CCccEeeEEEec-ccEEEEccchhhh--cCCCcEEEEECCC-CEEEEEcCCHHHHHHHHHHhhhh
Confidence            467889999998 6667666432110  0135799999985 66999999999999999998764

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=97.69  E-value=0.00014  Score=54.66  Aligned_cols=62  Identities=19%  Similarity=0.220  Sum_probs=44.8

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      .++..++|+|.++.-+.|..++.--.+.++ -..+|.|.||. +.|||+|||+.....||..|+
T Consensus        44 ~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~-~~~~f~i~t~~-r~y~l~A~s~ee~~~Wi~~I~  105 (108)
T cd01266          44 SRKFKLEFVIDLESCSQVDPGLLCTAGNCI-FGYGFDIETIV-RDLYLVAKNEEEMTLWVNCIC  105 (108)
T ss_pred             CCCCccceEEECCccEEEcccccccccCcc-cceEEEEEeCC-ccEEEEECCHHHHHHHHHHHH
Confidence            346789999999985554433211122222 34789999984 699999999999999999884

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=97.69  E-value=0.00012  Score=52.95  Aligned_cols=59  Identities=25%  Similarity=0.414  Sum_probs=46.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+|..++|+|.++.. +|...+ .    .+ ...||-|.+|..+.|+|+|||+.-...|+.-|+.|
T Consensus        38 ~~~~~~~~~I~L~~~-~v~~~~-~----~~-k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          38 KQDEKAEGLIFLSGF-TIESAK-E----VK-KKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             CCCCccceEEEccCC-EEEEch-h----cC-CceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            457788999999876 443321 1    12 46799999999899999999999999999988753

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=97.68  E-value=0.00013  Score=50.42  Aligned_cols=53  Identities=30%  Similarity=0.451  Sum_probs=43.5

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .++|.|.++.. +|...|.        +..||.|-+|+.+.|+|+|+|......|+..|+.|
T Consensus        39 ~~~~~i~l~~~-~~~~~~~--------~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          39 KPRGTILLSGA-VISEDDS--------DDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CceEEEEeceE-EEEECCC--------CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            78999999874 3444331        25799999999999999999999999999988753

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=97.67  E-value=0.00014  Score=53.97  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      ..|..++|.|.++. .+++.+|-+       ..++|-|.||. +.|+|+|+++...+.|+..|.-
T Consensus        37 ~~d~~p~G~I~L~~-~~~~~~~~~-------~~~~F~i~t~~-r~y~l~A~s~~e~~~Wi~al~~   92 (95)
T cd01265          37 SQDAKPLGRVDLSG-AAFTYDPRE-------EKGRFEIHSNN-EVIALKASSDKQMNYWLQALQS   92 (95)
T ss_pred             CCcccccceEECCc-cEEEcCCCC-------CCCEEEEEcCC-cEEEEECCCHHHHHHHHHHHHh
Confidence            35788999999986 556555533       24799999986 5699999999999999988754

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=97.24  E-value=0.0012  Score=42.80  Aligned_cols=56  Identities=29%  Similarity=0.516  Sum_probs=44.8

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      ..+.|.|.++. ..|...|-+.     -..+||.|-++..+.|+||++++.....|+..|+.
T Consensus        40 ~~~~~~i~l~~-~~v~~~~~~~-----~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          40 YKPKGSIPLSG-AEVEESPDDS-----GRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             CCCcceEEcCC-CEEEECCCcC-----CCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence            46778888877 6666555444     24589999999989999999999999999998864

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=97.23  E-value=0.0009  Score=52.08  Aligned_cols=56  Identities=25%  Similarity=0.359  Sum_probs=43.4

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      +..++|+|.++.-++|.-. ....|    .++||-|.|| .+.|||+|||+...+.|+.-|.
T Consensus        46 ~~~p~G~IdL~~~~~V~~~-~~~~~----~~~~f~I~tp-~R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          46 TTLPQGTIDMNQCTDVVDA-EARTG----QKFSICILTP-DKEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             CcccceEEEccceEEEeec-ccccC----CccEEEEECC-CceEEEEeCCHHHHHHHHHHHH
Confidence            5678999999776665522 22222    3789999999 5889999999999999998764

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=97.17  E-value=0.0014  Score=49.65  Aligned_cols=61  Identities=15%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             CCcceeEEeecCceeeeeccccCC-CCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHG-LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g-~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      ..++|.|.+...+.|...+.-..+ ..--+.|||-|.|| .+.||+.|+|+.....|+..|+.
T Consensus        44 ~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~-~r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          44 GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD-EGTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             cCcceeEECCcceEEEEecCCcCcccccccCccEEEEeC-CCeEEEEcCCHHHHHHHHHHHHh
Confidence            479999999987766654332221 12235799999997 46788999999999999998863

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=97.06  E-value=0.0022  Score=49.02  Aligned_cols=59  Identities=19%  Similarity=0.388  Sum_probs=44.2

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc--------------------cceeeeecChhHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK--------------------KDYFLCAETPGAARAWVS   63 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk--------------------K~yfLcAETp~aaraWvs   63 (236)
                      .|..++|+|.++ +.+|...+-  .+    .-.||-|-+|..                    +.|+|||||+.-...|+.
T Consensus        35 ~~~~~~g~I~L~-~~~v~~~~~--~~----~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~  107 (125)
T cd01252          35 TDKEPRGIIPLE-NVSIREVED--PS----KPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIK  107 (125)
T ss_pred             CCCCceEEEECC-CcEEEEccc--CC----CCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHH
Confidence            467889999999 444444332  11    336999988875                    568899999999999999


Q ss_pred             HHHHHH
Q 041344           64 TLHAAQ   69 (236)
Q Consensus        64 tl~Atq   69 (236)
                      .|+.+.
T Consensus       108 al~~~~  113 (125)
T cd01252         108 SIKASI  113 (125)
T ss_pred             HHHHHH
Confidence            997643

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=97.02  E-value=0.0017  Score=48.38  Aligned_cols=52  Identities=21%  Similarity=0.400  Sum_probs=40.9

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      +.++|.|.+..- +|.  +      +..|.|+|.|.++..+.|+|.|++|.....|+..|.
T Consensus        38 ~~~~G~I~L~~~-~i~--~------~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~   89 (91)
T cd01247          38 HGCRGSIFLKKA-IIA--A------HEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVV   89 (91)
T ss_pred             CCCcEEEECccc-EEE--c------CCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHh
Confidence            457999988752 222  2      246789999988877999999999999999998763

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>smart00233 PH Pleckstrin homology domain

Probab=96.76  E-value=0.0092  Score=38.88  Aligned_cols=59  Identities=29%  Similarity=0.442  Sum_probs=43.2

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+.+.|.++.. .|...+-+-.   .-...||.|.++..+.|+|+++|+.....|+..|+.+
T Consensus        42 ~~~~~~i~l~~~-~v~~~~~~~~---~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~  100 (102)
T smart00233       42 YKPKGSIDLSGI-TVREAPDPDS---AKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKA  100 (102)
T ss_pred             CCCceEEECCcC-EEEeCCCCcc---CCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHh
Confidence            355667777665 4444333211   1235799999999999999999999999999999754

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=96.34  E-value=0.015  Score=45.18  Aligned_cols=62  Identities=10%  Similarity=0.085  Sum_probs=47.2

Q ss_pred             CCCCcceeEEeecCceeeeeccc------cCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVN------FHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvN------f~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      .++.++|+|.||.+..|...-.-      -......-.|+|-|-||.++ |.|.|+|..-.+.|+.-|.
T Consensus        52 ~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~-~~l~a~s~~~~~~Wi~~i~  119 (121)
T cd01254          52 SSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRS-LKLKCKSSRKLKQWMASIE  119 (121)
T ss_pred             CCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcE-EEEEeCCHHHHHHHHHHHH
Confidence            46789999999999988754321      00011234799999999876 9999999999999998774

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=96.26  E-value=0.016  Score=45.36  Aligned_cols=58  Identities=19%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      +++|+|.++.-++|....-  -...+-.-.||-|.||. +.|||+|+++..+..|+.-|.-
T Consensus        42 ~~~g~IdL~~~~sVk~~~~--~~~~~~~~~~Fei~tp~-rt~~l~A~se~e~e~WI~~i~~   99 (101)
T cd01264          42 PDDCSIDLSKIRSVKAVAK--KRRDRSLPKAFEIFTAD-KTYILKAKDEKNAEEWLQCLNI   99 (101)
T ss_pred             CCCceEEcccceEEeeccc--cccccccCcEEEEEcCC-ceEEEEeCCHHHHHHHHHHHHh
Confidence            3469999988887653210  00001114799999998 8999999999999999987753

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=95.50  E-value=0.071  Score=34.79  Aligned_cols=32  Identities=28%  Similarity=0.589  Sum_probs=28.8

Q ss_pred             ceeEEeeecc--ccceeeeecChhHHHHHHHHHH
Q 041344           35 GCCFYIGTPQ--KKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus        35 gCCfyIgtpq--kK~yfLcAETp~aaraWvstl~   66 (236)
                      .-||.|-++.  .+.|+||+||+..+..|+..|+
T Consensus        64 ~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~   97 (99)
T cd00900          64 PNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQ   97 (99)
T ss_pred             CceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHh
Confidence            4699999996  8899999999999999998875

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=95.26  E-value=0.07  Score=41.25  Aligned_cols=53  Identities=17%  Similarity=0.208  Sum_probs=43.1

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTL   65 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl   65 (236)
                      ..|+|+|.++.-.+|.-.|     ..+ .+.||-|.||. ..|+|.|||....+.|+..|
T Consensus        46 ~~p~~vI~L~~c~~v~~~~-----d~k-~~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i   98 (101)
T cd01257          46 SAPKRVIPLESCFNINKRA-----DAK-HRHLIALYTRD-EYFAVAAENEAEQDSWYQAL   98 (101)
T ss_pred             CCceEEEEccceEEEeecc-----ccc-cCeEEEEEeCC-ceEEEEeCCHHHHHHHHHHH
Confidence            6799999999887765433     123 25899999988 58999999999999999876

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=95.20  E-value=0.051  Score=39.77  Aligned_cols=32  Identities=19%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             eeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus        36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      -+|.|-+|..+.|+|+|+++.....|+..|++
T Consensus        72 ~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          72 HVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             eEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence            69999999999999999999999999998875

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=95.19  E-value=0.053  Score=42.06  Aligned_cols=58  Identities=21%  Similarity=0.430  Sum_probs=39.9

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~A   67 (236)
                      .|..++|.|-... .  .|-||.=--..+  -.||-|.+|.. --||+||+| .....|+..|++
T Consensus        39 ~~~~p~gli~l~~-~--~V~~v~ds~~~r--~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          39 KKTKPIGLIDLSD-A--YLYPVHDSLFGR--PNCFQIVERALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             CCCCccceeeccc-c--EEEEccccccCC--CeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            4667777444332 2  444543221111  28999999987 679999999 999999999875

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=94.61  E-value=0.2  Score=37.62  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             cceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .-++|.|-++| +.|.|||+|+..=..|+..|..+
T Consensus        65 ~~~~F~I~~~~-rsf~l~A~s~eEk~~W~~ai~~~   98 (101)
T cd01219          65 RPHSFLVSGKQ-RCLELQARTQKEKNDWVQAIFSI   98 (101)
T ss_pred             cCceEEEecCC-cEEEEEcCCHHHHHHHHHHHHHH
Confidence            46899999998 89999999999999999998754

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=94.27  E-value=0.15  Score=39.21  Aligned_cols=56  Identities=14%  Similarity=0.044  Sum_probs=39.4

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      ..++|.|-+..-..|-.-.-...+    ...||=|.||. +.||+.|+|+.....|+..|+
T Consensus        41 ~~~~g~I~L~~i~~ve~v~~~~~~----~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~al~   96 (98)
T cd01244          41 CKKSALIKLAAIKGTEPLSDKSFV----NVDIITIVCED-DTMQLQFEAPVEATDWLNALE   96 (98)
T ss_pred             CceeeeEEccceEEEEEcCCcccC----CCceEEEEeCC-CeEEEECCCHHHHHHHHHHHh
Confidence            356777776655544322221112    24699999996 589999999999999999885

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=91.62  E-value=0.58  Score=36.27  Aligned_cols=55  Identities=18%  Similarity=0.218  Sum_probs=41.5

Q ss_pred             eecCceeeeeccccCCCCCccceeEEeeec-ccc-ceeeeecChhHHHHHHHHHHHH
Q 041344           14 FDENSTIAISPVNFHGLPKYDGCCFYIGTP-QKK-DYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        14 fDa~STitiSPvNf~g~~kYDgCCfyIgtp-qkK-~yfLcAETp~aaraWvstl~At   68 (236)
                      |.=.+.|.+|-+.+..-+.-|.|||+|+.. +-+ .|-|+|-|+..=+.|+..|+.+
T Consensus        38 y~~K~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~   94 (97)
T cd01222          38 YQFKAYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRA   94 (97)
T ss_pred             eEEEEEEEecceEEecCCCCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHH
Confidence            444566777766555555556799999666 334 6889999999999999998765

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=90.76  E-value=0.84  Score=35.11  Aligned_cols=37  Identities=30%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           31 PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        31 ~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..-+.+.|+|-||+ |.|+|.+||...-.+|+..|.++
T Consensus        76 ~~~~~~~~~i~T~~-kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   76 GEIHLKVFSIFTPT-KTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             SS-SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH-
T ss_pred             cCcCCCCcEEECCC-cEEEEEECCHHHHHHHHHHHHhC
Confidence            44677999998885 59999999999999999998764

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=90.11  E-value=0.58  Score=36.90  Aligned_cols=49  Identities=31%  Similarity=0.727  Sum_probs=31.0

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      ..||.|.++  +.+++..+|+.        +|.|-|| ++.|+|.. ..+-|..|+..|-.
T Consensus        49 ~~KGeI~~~--~~l~v~~k~~~--------~F~I~tp-~RtY~l~d-~~~~A~~W~~~I~~   97 (104)
T PF14593_consen   49 VLKGEIPWS--KELSVEVKSFK--------TFFIHTP-KRTYYLED-PEGNAQQWVEAIEE   97 (104)
T ss_dssp             EEEEEE--S--TT-EEEECSSS--------EEEEEET-TEEEEEE--TTS-HHHHHHHHHH
T ss_pred             eECcEEecC--CceEEEEccCC--------EEEEECC-CcEEEEEC-CCCCHHHHHHHHHH
Confidence            457888887  44455556654        7999999 66677665 45668889987743

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=88.30  E-value=0.91  Score=34.48  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=30.4

Q ss_pred             CccceeEEeeeccc---cceeeeecChhHHHHHHHHHHH
Q 041344           32 KYDGCCFYIGTPQK---KDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus        32 kYDgCCfyIgtpqk---K~yfLcAETp~aaraWvstl~A   67 (236)
                      ....|||-|..-..   |.+-|+|.++..|+.|+..|++
T Consensus        76 ~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          76 SLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             CccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence            36779998876554   7799999999999999999975

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=87.04  E-value=1.1  Score=34.42  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             eeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .||-|-+|+ |.|.|+|.|+..-..|+..|..+
T Consensus        65 ~~F~I~~~~-ks~~l~A~s~~Ek~~Wi~~i~~a   96 (99)
T cd01220          65 HCFTIFGGQ-CAITVAASTRAEKEKWLADLSKA   96 (99)
T ss_pred             eeEEEEcCC-eEEEEECCCHHHHHHHHHHHHHH
Confidence            699999885 67999999999999999999765

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=83.18  E-value=4.7  Score=33.21  Aligned_cols=56  Identities=23%  Similarity=0.349  Sum_probs=41.8

Q ss_pred             eEEeecCceeeeeccccCCCCCccceeEEeeeccccc-eeeeecChhHHHHHHHHHH
Q 041344           11 TITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKD-YFLCAETPGAARAWVSTLH   66 (236)
Q Consensus        11 ~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~-yfLcAETp~aaraWvstl~   66 (236)
                      ...|-=-+.|.+|-+.+---.+-|.|+|=|-+....+ |-|.|-||..=.+|+..|+
T Consensus        56 ~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~  112 (133)
T cd01227          56 APSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIR  112 (133)
T ss_pred             ceeEEEeeeEEeecccccccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHH
Confidence            3344444566666665555566789999887766655 8899999999999999986

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=82.32  E-value=2.7  Score=33.50  Aligned_cols=49  Identities=22%  Similarity=0.472  Sum_probs=39.6

Q ss_pred             ceeeeeccccCCCCCccceeEEe--eecc--ccceeeeecChhHHHHHHHHHH
Q 041344           18 STIAISPVNFHGLPKYDGCCFYI--GTPQ--KKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus        18 STitiSPvNf~g~~kYDgCCfyI--gtpq--kK~yfLcAETp~aaraWvstl~   66 (236)
                      +.|.+|-+.+--...-|.|+|=|  ++|.  .+.|-|.|-||..=.+|+..|+
T Consensus        57 ~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~  109 (114)
T cd01232          57 SKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIR  109 (114)
T ss_pred             cceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHH
Confidence            56777777776667779999966  6665  3569999999999999999986

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family

Probab=81.72  E-value=6.9  Score=27.37  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=21.2

Q ss_pred             HHhhhccchHHHHHHHHHhhhhhhhHHHHH
Q 041344          141 MKETLRVKDEELQNLARDLRARDSTIRDIA  170 (236)
Q Consensus       141 mkEtLrVKDeEl~~LardlraRD~tIkeia  170 (236)
                      |-+.|+|-.++|+.+++.+..--..+.+..
T Consensus         1 Ms~~l~Vdp~~Lr~~A~~~~~~A~~~~~~~   30 (100)
T PF10824_consen    1 MSDPLHVDPEALRQAAAQLDDIADQLAAAA   30 (100)
T ss_pred             CCCCceECHHHHHHHHHHHHHHHHHHHHHH
Confidence            557899999999999988654443333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	2e-09
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	1e-08
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	6e-08
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	3e-07
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	5e-07
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	2e-06
2yry_A	122	Pleckstrin homology domain-containing family A mem	3e-06
2dkp_A	128	Pleckstrin homology domain-containing family A mem	4e-06
2d9y_A	117	Pleckstrin homology domain-containing protein fami	4e-06
2d9v_A	130	Pleckstrin homology domain-containing protein fami	1e-05
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	1e-05
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	1e-05
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	2e-05
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	2e-05
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	2e-05
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	3e-05
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	3e-05
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	4e-05
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	5e-05
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	8e-05
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	2e-04
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	2e-04
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3cxb_B	112	Pleckstrin homology domain-containing family M mem	5e-04
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	6e-04

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 14/68 (20%), Positives = 24/68 (35%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
             R +   KG I   E   +A            D   F+     ++ Y  CA+   +A+ 
Sbjct: 42  DHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQ 101

Query: 61  WVSTLHAA 68
           WV  + + 
Sbjct: 102 WVDRIQSC 109

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
                  G I       +     N +G    +   F I T  +  YFL A TP     W+
Sbjct: 54  AGAEDPLGAIHLRG-CVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWI 112

Query: 63  STLHAAQLVLKAHKEA 78
             +  A    K+   +
Sbjct: 113 KAIQMASRTGKSGPSS 128

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
                  G I       +     N +G    +   F I T  +  YFL A TP     W+
Sbjct: 43  AGAEDPLGAIHLRG-CVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWI 101

Query: 63  STLHAA 68
             +  A
Sbjct: 102 KAIQMA 107

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 46.8 bits (111), Expect = 3e-07
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYDG----CCFYIGTPQKKDYFLCAETPGAA 58
           +    ++  +    +     +          DG    C   I     K   LCAE+    
Sbjct: 40  QTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDC 99

Query: 59  RAWVSTLHAAQ 69
            AW  TL  ++
Sbjct: 100 LAWKFTLQDSR 110

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
             +    KG I  DEN  +   P           C F +     K + + A      + W
Sbjct: 41  SEDLKDKKGDILLDENCCVESLPDK-----DGKKCLFLVKCF-DKTFEISASDKKKKQEW 94

Query: 62  VSTLHAAQLVLKAHK 76
           +  +H+   +LK   
Sbjct: 95  IQAIHSTIHLLKLGS 109

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 29  GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGS 87
                D   F +     + Y L A      + WVS L   Q+  + H EA+   +   S
Sbjct: 63  SPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRL---QICTQHHTEAIGKNNSGPS 118

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E ++ G+I        A+ P +           F       + YF  AE+P    AW
Sbjct: 56  DEKEESILGSIPLLSFRVAAVQPSDNISRK----HTFKAEHAGVRTYFFSAESPEEQEAW 111

Query: 62  VSTLHAA 68
           +  +  A
Sbjct: 112 IQAMGEA 118

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 4/67 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E  + G+I         ++  +           F    P  + Y+ C +T      W
Sbjct: 55  DEKEEGILGSILLPSFQIALLTSEDHINRK----YAFKAAHPNMRTYYFCTDTGKEMELW 110

Query: 62  VSTLHAA 68
           +  +  A
Sbjct: 111 MKAMLDA 117

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E ++ G+I        A+ P +           F       + YF  AE+P    AW
Sbjct: 45  DEKEESILGSIPLLSFRVAAVQPSDNISRK----HTFKAEHAGVRTYFFSAESPEEQEAW 100

Query: 62  VSTLHAA 68
           +  +  A
Sbjct: 101 IQAMGEA 107

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 16/50 (32%)

Query: 32  KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNS 81
           +       +   +     LCAET   A AW + L  A          V S
Sbjct: 76  RSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPS 125

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
                 KGT      S      +      +    CF + +  ++ Y   A +P  AR WV
Sbjct: 41  EKSKQPKGTFLIKGYSVRMAPHLRRDSKKES---CFELTSQDRRTYEFTATSPAEARDWV 97

Query: 63  STLHAA 68
             +   
Sbjct: 98  DQISFL 103

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYD--GCCFYIGTPQKKDYFLCAETPGAARA 60
           + E    G  +   +   A+         K +  G  F + T     Y++ A +      
Sbjct: 55  KEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAE 114

Query: 61  WVSTLHAA 68
           W+  +   
Sbjct: 115 WIEAIKKL 122

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 7/60 (11%)

Query: 9   KGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
           KG+I  D    +  +        K     F +    K  Y L A++      W++ L+  
Sbjct: 70  KGSIFLDSCMGVVQNN-------KVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E      I   E   +     +   +       F I T  +  +++ A++P    +W
Sbjct: 47  SELEKEPLRVIPLKEVHKVQECKQSDIMMRDN---LFEIVTTSRT-FYVQADSPEEMHSW 102

Query: 62  VSTLHAAQLVLKAHKEAVNS 81
           +  +  A +  +    + +S
Sbjct: 103 IKAVSGAIVAQRGPGRSASS 122

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 4   NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVS 63
            +   KG    D       + +   G       CF I  P K+ Y   A +P  A  WV 
Sbjct: 145 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDC---CFEICAPDKRIYQFTAASPKDAEEWVQ 201

Query: 64  TLHAAQLVLK 73
            L   + +L+
Sbjct: 202 QL---KFILQ 208

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
            +  P     +   E S +           +    CF +  P  + ++LCA+T   A  W
Sbjct: 51  DQMSPEPIRILDLTECSAVQFDY------SQERVNCFCLVFP-FRTFYLCAKTGVEADEW 103

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGN 85
           +  L   +  L   ++ +N   G 
Sbjct: 104 IKIL---RWKLSQIRKQLNQGEGT 124

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
           +++ + KG I    ++  +                F I T +++D+F  A       AWV
Sbjct: 39  KSDNSPKGMIPLKGSTLTSPCQDFGKR-----MFVFKITTTKQQDHFFQAAFLEERDAWV 93

Query: 63  STLHAAQLVLKAHKE 77
             ++ A   ++  + 
Sbjct: 94  RDINKAIKCIEGLEH 108

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E +V G++     +     P    G        F    P  + Y L A+T    R W
Sbjct: 45  DSREESVLGSVLLPSYNIRPDGPGAPRGRR----FTFTAEHPGMRTYVLAADTLEDLRGW 100

Query: 62  VSTLHAA 68
           +  L  A
Sbjct: 101 LRALGRA 107

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 41.4 bits (97), Expect = 5e-05
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 3/66 (4%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
             +   KG    D       + +   G       CF I  P K+ Y   A +P  A  WV
Sbjct: 55  DKDKQQKGEFAIDGYDVRMNNTLRKDGKKDC---CFEICAPDKRIYQFTAASPKDAEEWV 111

Query: 63  STLHAA 68
             L   
Sbjct: 112 QQLKFI 117

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 4   NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVS 63
            E   KG I     ST+ +   N           F + T Q+  +    E       W+S
Sbjct: 44  KEMYSKGIIPLSAISTVRVQGDN----------KFEVVTTQRT-FVFRVEKEEERNDWIS 92

Query: 64  TLHAAQLVLKAHK-EAVNSLSGNGSA 88
            L      LK+    + +  SG  S 
Sbjct: 93  IL---LNALKSQSLTSQSQASGPSSG 115

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 4  NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVS 63
               KG+I       I +           D     +  P ++ +++ A      + W+ 
Sbjct: 36 VCKGSKGSIKM-AVCEIKVHSA--------DNTRMELIIPGEQHFYMKAVNAAERQRWLV 86

Query: 64 TLHAAQLVLK 73
           L +++  L 
Sbjct: 87 ALGSSKASLT 96

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
            R  +   KG I   +   + I   +   +P  +   F +        ++ A +P +   
Sbjct: 53  GRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANT-LYIFAPSPQSRDL 111

Query: 61  WVSTLHAAQ 69
           WV  L    
Sbjct: 112 WVKKLKEEI 120

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 5/65 (7%), Positives = 15/65 (23%), Gaps = 6/65 (9%)

Query: 4   NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVS 63
            +     +       T+ +           +   F +       Y   A+   + + W+ 
Sbjct: 43  EDVAALESQ-PLLGFTVTLVKDE-----NSESKVFQLLHKGMVFYVFKADDAHSTQRWID 96

Query: 64  TLHAA 68
                
Sbjct: 97  AFQEG 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 15/130 (11%)

Query: 107 CSKEIEAAMQISLRNALGTMTNRITDG---------PMDDLSIMKETLRVKDEELQNLAR 157
            + +   A  +S +  L T   ++TD           +D  S    TL   DE    L +
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS---MTL-TPDEVKSLLLK 309

Query: 158 DLRARDSTIRDIADKLSETAEA--AEAAASAAHTMDEQRRIACAEIERINKESTKQLETC 215
            L  R   +       +    +  AE+      T D  + + C ++  I + S   LE  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 216 VLKVNFSQLF 225
             +  F +L 
Sbjct: 370 EYRKMFDRLS 379

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)

Query: 3  RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
          R +     ++             N    P      F +    +    L AE+      W+
Sbjct: 38 RTDVIPLLSVNMGGEQCGGCRRANTTDRP----HAFQVILSDRPCLELSAESEAEMAEWM 93

Query: 63 STLHAA 68
            L  A
Sbjct: 94 QHLCQA 99

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 19  TIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69
           +I +S   F      +   F I TP  +   L A T  A   W+  L   +
Sbjct: 54  SIDLSSAVFDCKADAEEGIFEIKTP-SRVITLKAATKQAMLYWLQQLQMKR 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	98.22
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	98.2
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	98.19
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	98.17
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	98.15
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	98.13
2yry_A	122	Pleckstrin homology domain-containing family A mem	98.13
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	98.12
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	98.11
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	98.08
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	98.08
2d9y_A	117	Pleckstrin homology domain-containing protein fami	98.08
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	98.05
2dkp_A	128	Pleckstrin homology domain-containing family A mem	98.01
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	98.01
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	98.0
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	97.97
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	97.95
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	97.95
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	97.95
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	97.9
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	97.89
2d9v_A	130	Pleckstrin homology domain-containing protein fami	97.88
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	97.87
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	97.87
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	97.85
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	97.77
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	97.76
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	97.71
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	97.63
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	97.59
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	97.55
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	97.49
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	97.48
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	97.45
3cxb_B	112	Pleckstrin homology domain-containing family M mem	97.41
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	97.38
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	97.32
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	97.25
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	97.25
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	97.21
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	97.2
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	97.14
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	97.1
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	97.0
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	97.0
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	96.91
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	96.71
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	96.7
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	96.66
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	96.51
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	96.47
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	96.18
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	95.94
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	95.79
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	95.63
1wi1_A	126	Calcium-dependent activator protein for secretion,	95.49
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	95.45
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	94.75
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	93.34
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	93.27
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	92.81
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	92.78
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	92.53
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	92.38
3gwk_C	98	SAG1039, putative uncharacterized protein SAG1039;	90.33
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	88.21
4i0x_B	103	ESAT-6-like protein MAB_3113; structural genomics,	87.99
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	87.97
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	87.55
4ioe_A	93	Secreted protein ESXB; structural genomics, PSI-bi	85.13
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	85.04
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	82.76
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	80.07

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.22  E-value=2.6e-06  Score=60.98  Aligned_cols=62  Identities=18%  Similarity=0.366  Sum_probs=47.5

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCC---c--cceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPK---Y--DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~k---Y--DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+..++|.|.++..+-+.+.+.   +.|.   .  ..+||.|-||.++.|+|+|+|+.....|+..|+.+
T Consensus        56 ~~~~~~g~i~L~~~~v~~~~~~---~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~  122 (129)
T 1x1g_A           56 EENRPVGGFSLRGSLVSALEDN---GVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  122 (129)
T ss_dssp             CCSSCSCCEESTTCCCEECCSS---SSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             cCCccceEEECcCCEEEEeCCC---CCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            4678999999987543333332   2221   1  46899999999889999999999999999999754

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.20  E-value=5.8e-06  Score=57.70  Aligned_cols=72  Identities=21%  Similarity=0.343  Sum_probs=54.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSL   82 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEAvnsl   82 (236)
                      .+|..++|+|.++....|...|-.     ....+||.|-|| .+.|+|+|||+.....|+..|+.+.   +.+++...++
T Consensus        42 ~~~~~~~g~i~L~~~~~v~~~~~~-----~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~ai~~~~---~~~~~~~~~~  112 (115)
T 2dn6_A           42 EDLKDKKGDILLDENCCVESLPDK-----DGKKCLFLVKCF-DKTFEISASDKKKKQEWIQAIHSTI---HLLKLGSSGP  112 (115)
T ss_dssp             TTCSSEEEEECCCTTCEEEEECCC-----TTCCSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHH---HHHHHSCCCC
T ss_pred             CCCcccCcEEEecCcEEEEECCCC-----CCCeeEEEEEeC-CCEEEEEcCCHHHHHHHHHHHHHHH---HHHhcCCCCC
Confidence            356788999999988888776532     223589999888 4679999999999999999887653   4566655544


Q ss_pred             C
Q 041344           83 S   83 (236)
Q Consensus        83 s   83 (236)
                      +
T Consensus       113 ~  113 (115)
T 2dn6_A          113 S  113 (115)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=98.19  E-value=3.1e-06  Score=59.42  Aligned_cols=65  Identities=22%  Similarity=0.290  Sum_probs=47.6

Q ss_pred             CCCCcceeEEeecCceeeeeccc---c--CCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVN---F--HGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvN---f--~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ++..++|.|.+... +|.|.+..   .  ....+-..+||.|-||..+.|||+|||+.....|+..|+.++
T Consensus        41 ~~~~~~g~i~l~~~-~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           41 TRQNIEDKVHMPMD-CINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             TCCSEEEEEEHHHH-EEEEEEGGGCCSCCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccccccc-ceeecccccccccCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            45677888877654 34444221   1  112233368999999999999999999999999999998775

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=98.17  E-value=6.8e-06  Score=56.14  Aligned_cols=64  Identities=22%  Similarity=0.417  Sum_probs=48.8

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .++..++|.|.++..+ |.+.|..  ....-..+||.|-||..+.|+|+|+|+.....|+..|+.+.
T Consensus        41 ~~~~~~~g~i~L~~~~-v~~~~~~--~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i  104 (108)
T 1u5d_A           41 EKSKQPKGTFLIKGYS-VRMAPHL--RRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL  104 (108)
T ss_dssp             TTCSSCSEEEECTTCE-EEECGGG--CSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEecceE-EEeCCcc--ccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            3567899999997665 5444421  11222358999999998999999999999999999997654

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=98.15  E-value=2.9e-06  Score=58.80  Aligned_cols=53  Identities=17%  Similarity=0.384  Sum_probs=44.0

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .++|.|.+. +.+|.+.|-        +.+||.|-+|..+.|+|+|+|+.....|+..|+.+
T Consensus        39 ~~~g~i~L~-~~~v~~~~~--------~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a   91 (103)
T 3rcp_A           39 GSKGSIKMA-VCEIKVHSA--------DNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSS   91 (103)
T ss_dssp             CCSCEEEGG-GCEEECCTT--------CSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTT
T ss_pred             CcccEEEee-eeEEEEcCC--------CCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence            489999994 556655442        57899999998899999999999999999988754

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.13  E-value=7.5e-06  Score=57.41  Aligned_cols=60  Identities=7%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..|..++|.|.++..+.+...|-      .-..+||.|-||..+.|+|+|||+..+..|+..|+.+
T Consensus        42 ~~~~~~~~~i~L~~~~~~~~~~~------~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a  101 (109)
T 1wgq_A           42 SEDVAALESQPLLGFTVTLVKDE------NSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             TTCSSCSEEEECSSEEEEECCCS------SCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCcCccCceEECCCCEEEECCCC------CCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence            35678899999987766654431      1135799999999999999999999999999999865

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.13  E-value=8.5e-06  Score=57.57  Aligned_cols=63  Identities=22%  Similarity=0.404  Sum_probs=47.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+|..++|.|.++..+-..+.|..-    .-..+||.|-++..+.|+|+|+|......|+..|+.+.
T Consensus        57 ~~~~~~~g~i~L~~~~v~~~~~~~~----~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  119 (122)
T 2yry_A           57 EKEESILGSIPLLSFRVAAVQPSDN----ISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  119 (122)
T ss_dssp             TTCCSCCEEEESTTCCCEECCTTCS----CSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccEEEcCCCEEEEcCcccc----CCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            3567899999998765222223221    12248999999989999999999999999999997653

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.12  E-value=4e-06  Score=58.68  Aligned_cols=63  Identities=25%  Similarity=0.466  Sum_probs=49.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCC--CccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLP--KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~--kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      .+|..++|.|.++..+.|...+. +.|.|  .-..+||.|.|| .+.|+|||+|+.....|+..|+.
T Consensus        44 ~~~~~~~g~i~L~~~~~v~~~~~-~~~~~~~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~  108 (117)
T 1v5u_A           44 RMDTECKGVIDLAEVEAVAPGTP-TIGAPKTVDEKAFFDVKTT-RRVYNFCAQDVPSAQQWVDRIQS  108 (117)
T ss_dssp             SSCSSCCCEEEGGGEEEEECCCC-CTTSCSSSCTTTCEEEEES-SCEEEEECSSHHHHHHHHHHHHT
T ss_pred             CCCCccceEEEccCcEEEeecCc-cccccccCCCCeEEEEECC-CceEEEECCCHHHHHHHHHHHHH
Confidence            35678999999988877765432 45555  344589999765 56899999999999999999865

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=98.11  E-value=1.1e-05  Score=57.87  Aligned_cols=65  Identities=22%  Similarity=0.323  Sum_probs=46.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+..++|+|.++..+.+.+.+. ......-..+||.|-||..+.|+|+|+|+.....|+..|+.+
T Consensus        54 ~~~~~~~g~i~L~~~~v~~~~~~-~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~  118 (129)
T 1x05_A           54 AGAEDPLGAIHLRGCVVTSVESN-SNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  118 (129)
T ss_dssp             SCCSSCSEEEECTTCEEEECCCC-CCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCcceeEEEccCCEEEEccCC-ccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence            35678999999987433333221 000001157899999998889999999999999999988654

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=1.1e-05  Score=58.11  Aligned_cols=60  Identities=28%  Similarity=0.458  Sum_probs=47.3

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEA   78 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEA   78 (236)
                      .++|.|.++..+ |  .|.      .-+.+||.|-||..+.|+|+|+|+.....|+..|+.+.   +.|++.
T Consensus        50 ~~~g~I~L~~~~-v--~~~------~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~---~~~~~~  109 (120)
T 2d9x_A           50 KPRGTLQLAGAV-I--SPS------DEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICT---QHHTEA  109 (120)
T ss_dssp             CCSEEEECTTCC-E--ECC------SSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             CccceEEcceEE-E--Eec------CCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH---HHhhhh
Confidence            689999998753 3  331      23579999999998999999999999999999997653   445444

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=98.08  E-value=1.1e-05  Score=55.71  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=45.2

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ++..++|.|.++..+.+.+.+. ..+...-..+||.|-||..+.|+|+|+|+.....|+..|+.+
T Consensus        44 ~~~~~~g~i~L~~~~v~~~~~~-~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~  107 (109)
T 2i5f_A           44 GAEDPLGAIHLRGCVVTSVESN-SNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  107 (109)
T ss_dssp             SCSSCSEEEECTTCEEEEECC---------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCccEEEECCCCEEEEccCC-cccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            4677999999987432222211 000001156899999998888999999999999999999765

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=1e-05  Score=56.52  Aligned_cols=62  Identities=23%  Similarity=0.411  Sum_probs=46.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+|..++|.|.++..+-..+.|..-    .-..+||.|-++..+.|+|+|+|+.....|+..|+.+
T Consensus        46 ~~~~~~~g~i~L~~~~v~~~~~~~~----~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~  107 (117)
T 2d9y_A           46 EKEESILGSIPLLSFRVAAVQPSDN----ISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA  107 (117)
T ss_dssp             TTCCSCCEEEECSSCEEEECCTTTT----CCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             CCCCCcCCEEEeCCeEEEEcCcccc----CCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            3567899999998765322333221    1224799999888899999999999999999999764

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.05  E-value=4.2e-06  Score=59.21  Aligned_cols=56  Identities=23%  Similarity=0.336  Sum_probs=45.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ..+..++|.|.++..+.|...+          .+||.|-|| .+.|+|+|+|......|+..|+.+.
T Consensus        43 ~~~~~~~g~i~l~~~~~v~~~~----------~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~~l~~~~   98 (115)
T 2cod_A           43 EKEMYSKGIIPLSAISTVRVQG----------DNKFEVVTT-QRTFVFRVEKEEERNDWISILLNAL   98 (115)
T ss_dssp             SCCSSCCCEEETTTEEEEEEET----------TTEEEEEES-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCEEECCcceEEEeCC----------CCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence            3566899999998776555432          589999977 5789999999999999999998654

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=98.01  E-value=1.3e-05  Score=57.06  Aligned_cols=63  Identities=21%  Similarity=0.415  Sum_probs=46.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+|..++|.|.++.. +|...+..-.   .-..+||.|-+|..+.|+|+|||+.....|+..|+.+.
T Consensus        56 ~~~~~~~g~i~L~~~-~v~~~~~~~~---~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  118 (128)
T 2dkp_A           56 EKEEGILGSILLPSF-QIALLTSEDH---INRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA  118 (128)
T ss_dssp             TTCCSEEEEECGGGS-EEEECCGGGC---CSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCcccceEEEcCce-EEEEcCCccc---CCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            356788999999643 4443322111   12247999999998999999999999999999997654

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.01  E-value=1.5e-05  Score=60.63  Aligned_cols=59  Identities=24%  Similarity=0.401  Sum_probs=45.8

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeecccc-----------------------ceeeeecChhHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKK-----------------------DYFLCAETPGAARA   60 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK-----------------------~yfLcAETp~aara   60 (236)
                      .|..++|+|.++..+.+ -.      ..+.+++||.|-+|..+                       .|+|||||+.....
T Consensus        42 ~~~~p~G~I~L~~~~v~-~~------~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~  114 (130)
T 1v88_A           42 KNGQWVGTVLLNACEII-ER------PSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRC  114 (130)
T ss_dssp             SSCCCCEEEECSSCEEC-CC------CTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHH
T ss_pred             CCCCceEEEEcCCCEEE-EC------CCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHH
Confidence            46789999999876532 11      23457899999998653                       38899999999999


Q ss_pred             HHHHHHHHH
Q 041344           61 WVSTLHAAQ   69 (236)
Q Consensus        61 Wvstl~Atq   69 (236)
                      |+..|+.+.
T Consensus       115 Wi~ai~~a~  123 (130)
T 1v88_A          115 WMDALELAL  123 (130)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987653

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.00  E-value=2.4e-05  Score=56.50  Aligned_cols=58  Identities=19%  Similarity=0.200  Sum_probs=46.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ..|..++|.|.++..+.+..        ..-..+||.|-|| .+.|+|||||+.....|+..|+.+.
T Consensus        46 ~~~~~~~g~I~L~~~~~~~~--------~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~~  103 (119)
T 2dhk_A           46 AQDANPLDSIDLSSAVFDCK--------ADAEEGIFEIKTP-SRVITLKAATKQAMLYWLQQLQMKR  103 (119)
T ss_dssp             TTCCSCSEEEEGGGCEEEEC--------TTGGGCEEEEECS-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCcccccEEECCCCEEEec--------CCCCCCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence            35678999999987665542        1123579999999 7889999999999999999998765

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=97.97  E-value=2.5e-05  Score=55.83  Aligned_cols=61  Identities=21%  Similarity=0.382  Sum_probs=48.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atql   70 (236)
                      .+|..++|.|.++..+.|...+.      .-..+||.|-|| .+.|+|+|+|+.....|+..|+.+..
T Consensus        52 ~~~~~~~g~i~L~~~~~v~~~~~------~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~i~  112 (126)
T 1fao_A           52 QMSPEPIRILDLTECSAVQFDYS------QERVNCFCLVFP-FRTFYLCAKTGVEADEWIKILRWKLS  112 (126)
T ss_dssp             TTCSSCSEEEEGGGCCEEEEECS------SSSSSEEEEEET-TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCceeEEEccceEEEEeccc------CCCCCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            45678999999998877765441      122479999987 56899999999999999999976543

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.95  E-value=2.5e-05  Score=54.89  Aligned_cols=62  Identities=21%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .++..++|.|.++..+.+...+.     ..-..+||.|-||..+.|+|+|+|+.....|+..|+.+.
T Consensus        39 ~~~~~~~g~i~L~~~~~~~~~~~-----~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~  100 (113)
T 1pls_A           39 KSDNSPKGMIPLKGSTLTSPCQD-----FGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI  100 (113)
T ss_dssp             TTCSSCSEEEESSSCCEESSCCS-----SCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCcceEEEcCCCEEEEecCC-----CCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence            34678999999988776642221     122457999999998999999999999999999997654

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=97.95  E-value=2.5e-05  Score=60.74  Aligned_cols=62  Identities=18%  Similarity=0.263  Sum_probs=53.1

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..++|.|.++..+.|...+.+-.+.+.....||-|.||. +.|||||+|+.....|+..|+.+
T Consensus        58 ~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~-rt~~l~A~s~~e~~~Wi~aL~~~  119 (164)
T 2lul_A           58 KYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA-NTLYIFAPSPQSRDLWVKKLKEE  119 (164)
T ss_dssp             CCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccEEEEeeeEEEEeccccccCcccccceeEEEecCC-cEEEEECCCHHHHHHHHHHHHHH
Confidence            457999999988888877777666777788999999996 57999999999999999999754

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.95  E-value=2.5e-05  Score=54.27  Aligned_cols=63  Identities=16%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeec-------cccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTP-------QKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtp-------qkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+|..++|+|.++..+-+.+.|..-    .-..+||-|-||       ..+.|+|+|+|+.....|+..|+.+.
T Consensus        42 ~~~~~~~g~i~L~~~~v~~~~~~~~----~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~  111 (118)
T 1v89_A           42 EEDTKPQGCMYLPGCTIKEIATNPE----EAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA  111 (118)
T ss_dssp             SSCCSCSEEECSTTEEEEEECCCSS----CCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCEEEEcCcCcc----cCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            3567899999997665444544221    123579999996       67889999999999999999997653

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=97.90  E-value=2.3e-05  Score=55.35  Aligned_cols=63  Identities=16%  Similarity=0.294  Sum_probs=48.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccc-cCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVN-FHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvN-f~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atql   70 (236)
                      .+|..++|.|.++....|...+.. +.    -..+||.|-|| .+.|+|+|+|......|+..|+.+..
T Consensus        48 ~~~~~~~g~i~l~~~~~v~~~~~~~~~----~~~~~F~i~~~-~r~~~l~a~s~~e~~~W~~al~~~i~  111 (125)
T 1eaz_A           48 ELEKEPLRVIPLKEVHKVQECKQSDIM----MRDNLFEIVTT-SRTFYVQADSPEEMHSWIKAVSGAIV  111 (125)
T ss_dssp             TTCSSCSEEEEGGGCCEEEECTTHHHH----TCSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCcceeEEEcccceEEeeccccccC----CcCCEEEEEeC-CcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            356789999999988877664321 11    23579999987 56799999999999999999976543

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=97.89  E-value=1.7e-05  Score=58.04  Aligned_cols=37  Identities=16%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             ccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344           33 YDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus        33 YDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+.+||.|-||..+.|+|||||+.....||..|+.+.
T Consensus        87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i  123 (128)
T 2rlo_A           87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQI  123 (128)
T ss_dssp             CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            5789999999988999999999999999999997653

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.88  E-value=4.2e-05  Score=56.36  Aligned_cols=65  Identities=20%  Similarity=0.250  Sum_probs=45.7

Q ss_pred             CCCCcceeEEeecCc-eeee----eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENS-TIAI----SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         4 ~e~~~kG~I~fDa~S-Titi----SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .|..++|.|..+.+. .|.+    +++... ..+...+||.|-|+..+.|||||||+.....|+..|+.+.
T Consensus        44 ~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~-~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~  113 (130)
T 2d9v_A           44 TAQDEEDRVVIHFNVRDIKVGQECQDVQPP-EGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEAN  113 (130)
T ss_dssp             STTSEEEEEECTTTEEEEEEGGGCSSCCCC-SSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCceEecccceeEEeccccccccCCC-CCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            456688988765432 2222    122211 1233568999999888899999999999999999998764

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=97.87  E-value=3.5e-05  Score=57.22  Aligned_cols=64  Identities=25%  Similarity=0.457  Sum_probs=47.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .++..++|.|.++..+ |...|-..  ...-..+||.|-||..+.|+|+|+|......|+..|+.+.
T Consensus        55 ~~~~~~~g~i~L~~~~-v~~~~~~~--~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i  118 (148)
T 1u5f_A           55 DKDKQQKGEFAIDGYD-VRMNNTLR--KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  118 (148)
T ss_dssp             TTCSSCSEEEECTTCE-EEECTTSC--SSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCcccceEEEcCCcE-EEECCCcc--cCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            3567789999998774 44333111  1111248999999998999999999999999999987653

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.87  E-value=2e-05  Score=58.21  Aligned_cols=57  Identities=21%  Similarity=0.376  Sum_probs=46.1

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      +..++|+|.++..+.+...       ++-..+||.|-||..+.|||+|+|+.....|+..|+.+
T Consensus        66 ~~~~~g~I~L~~~~~~~~~-------~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~a  122 (150)
T 1wg7_A           66 SKEPKGSIFLDSCMGVVQN-------NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI  122 (150)
T ss_dssp             SSCCSEEECTTTCCEECCC-------CSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCcCcEEecccCEEEecC-------CCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            5679999999885554322       23346899999998899999999999999999999754

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=97.85  E-value=5.8e-05  Score=53.32  Aligned_cols=63  Identities=25%  Similarity=0.400  Sum_probs=46.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+|..++|+|.++.. +  |.++.-. ...-..+||.|.+|..+.|+|+|+|+.....|+..|+.+.
T Consensus        46 ~~~~~~~g~i~l~~~-~--v~~~~~~-~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  108 (123)
T 1upq_A           46 SREESVLGSVLLPSY-N--IRPDGPG-APRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS  108 (123)
T ss_dssp             TTCCSCCEEEEGGGC-E--EEECCSS-CTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCcccceEEECCCC-E--EEECCCC-ccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHH
Confidence            356788999997653 3  3333211 1222468999999999999999999999999999997654

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.77  E-value=6.2e-05  Score=56.81  Aligned_cols=61  Identities=25%  Similarity=0.440  Sum_probs=46.8

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+..+.|.|.++..++|...+..-.  + -..+||.|-||. +.|||+|||+.....||..|+.+
T Consensus        58 ~~~~~~G~I~L~~~~~V~~~~~~~~--~-~~~~~F~i~t~~-r~y~l~A~s~~e~~~Wi~al~~a  118 (126)
T 1v5p_A           58 VGAGAVGSLQLTYISKVSIATPKQK--P-KTPFCFVINALS-QRYFLQANDQKDLKDWVEALNQA  118 (126)
T ss_dssp             TTCCCSEEEETTTCCEEEECCTTTS--C-SCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHT
T ss_pred             CCceeeEEEECCCccEEecCCcccC--C-CCCEEEEEECCC-EEEEEECCCHHHHHHHHHHHHHH
Confidence            3567899999987778876554322  1 235799888775 56999999999999999988743

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=97.76  E-value=7.6e-05  Score=53.62  Aligned_cols=64  Identities=20%  Similarity=0.350  Sum_probs=46.7

Q ss_pred             CCcceeEEeecCce--eeeeccccCCCCCccceeEEeee--ccc-----------------cceeeeecChhHHHHHHHH
Q 041344            6 PTVKGTITFDENST--IAISPVNFHGLPKYDGCCFYIGT--PQK-----------------KDYFLCAETPGAARAWVST   64 (236)
Q Consensus         6 ~~~kG~I~fDa~ST--itiSPvNf~g~~kYDgCCfyIgt--pqk-----------------K~yfLcAETp~aaraWvst   64 (236)
                      ..++|.|.++..+.  |...|-...+    ...||-|-|  |.+                 +.|||+|+|+.....|+..
T Consensus        47 ~~p~g~I~L~~~~~~~v~~~~~~~~~----~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~a  122 (134)
T 2y7b_A           47 KNPIGRINLANCTSRQIEPANREFCA----RRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQK  122 (134)
T ss_dssp             SCCSEEEEGGGBCSSSCEECCTTTCC----CTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHH
T ss_pred             cCceEEEEhhhCccccccccchhhcc----CCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHH
Confidence            68899999987554  3333322222    235999988  553                 3699999999999999999


Q ss_pred             HHHHHHHHH
Q 041344           65 LHAAQLVLK   73 (236)
Q Consensus        65 l~AtqlVlk   73 (236)
                      |+.+...++
T Consensus       123 l~~~i~~~~  131 (134)
T 2y7b_A          123 LNQVLVDIR  131 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            988766655

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=97.71  E-value=7.5e-05  Score=60.74  Aligned_cols=64  Identities=25%  Similarity=0.442  Sum_probs=48.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ..+..++|.|.++..+.+...+.   +...-..+||.|-||..+.|+|+|+|+..+..|+..|+.+.
T Consensus       144 ~~~~~p~g~I~L~~~~~v~~~~~---~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai  207 (211)
T 1u5e_A          144 DKDKQQKGEFAIDGYDVRMNNTL---RKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  207 (211)
T ss_dssp             TTCSSCSEEEECTTCEEEECGGG---CSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCccceEEEEeCCcEEEEcCCc---cccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            34677899999988776643221   11111358999999998999999999999999999997653

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=97.63  E-value=0.00023  Score=57.32  Aligned_cols=76  Identities=20%  Similarity=0.292  Sum_probs=53.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccc----cCCCCCccceeEEeeeccc-----cceeeeecChhHHHHHHHHHHHHH---H
Q 041344            3 RNEPTVKGTITFDENSTIAISPVN----FHGLPKYDGCCFYIGTPQK-----KDYFLCAETPGAARAWVSTLHAAQ---L   70 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvN----f~g~~kYDgCCfyIgtpqk-----K~yfLcAETp~aaraWvstl~Atq---l   70 (236)
                      ..+..++|.|.+..-+.+.+.++.    ..+.|+  .-||.|-+|.+     ..|||||||......|+..||.|.   .
T Consensus       202 ~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~--~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~g~~  279 (291)
T 3tca_A          202 GKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPT--DHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAKYGKT  279 (291)
T ss_dssp             TCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSS--SCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHHTHH
T ss_pred             CccccccCceeeccceeEEEEecCccccccCCCC--CeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHhcchH
Confidence            356778888888766655553322    112221  24999999875     349999999999999999998773   4


Q ss_pred             HHHHHHHHhh
Q 041344           71 VLKAHKEAVN   80 (236)
Q Consensus        71 VlkAHKEAvn   80 (236)
                      .++-|.+|+.
T Consensus       280 l~~ny~~~~~  289 (291)
T 3tca_A          280 LYDNYQRAVA  289 (291)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            5677777763

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.59  E-value=0.00013  Score=57.33  Aligned_cols=60  Identities=8%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..|..+.|.|.++..+.++..+.     .+-..|||.|-||. +.|+|||||+.....|+.-|+..
T Consensus        52 ~~d~~~~g~I~L~~~~~~~~~~~-----~~~~~~~F~I~t~~-r~~~f~A~s~ee~~eWi~aI~~v  111 (149)
T 1x1f_A           52 KKSIIYVDKLDIVDLTCLTEQNS-----TEKNCAKFTLVLPK-EEVQLKTENTESGEEWRGFILTV  111 (149)
T ss_dssp             SSCSSCSEECCCSSCCEEEECCC-----TTSCCCEEEEECSS-CCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCccccCcEEECCCceEEeeccC-----CCCcCcEEEEEcCC-CEEEEEcCCHHHHHHHHHHHHHH
Confidence            45677889998888776643211     12246899999985 68999999999999999988643

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=97.55  E-value=0.00027  Score=49.77  Aligned_cols=60  Identities=18%  Similarity=0.385  Sum_probs=45.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc---------------------cceeeeecChhHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK---------------------KDYFLCAETPGAARAW   61 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk---------------------K~yfLcAETp~aaraW   61 (236)
                      .+|..++|.|.++..+.+.+.+       .-...||-|-+|..                     +.|+|+|+|+.....|
T Consensus        39 ~~~~~~~g~i~L~~~~v~~~~~-------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~W  111 (127)
T 1fgy_A           39 TTDKEPRGIIPLENLSIREVLD-------PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW  111 (127)
T ss_dssp             TTCSSCSEEEECTTCEEEEECC-------SSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHH
T ss_pred             CCCCCcceEEECCceEEEEccC-------CCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHH
Confidence            3567899999998754332221       12357999998863                     5799999999999999


Q ss_pred             HHHHHHHH
Q 041344           62 VSTLHAAQ   69 (236)
Q Consensus        62 vstl~Atq   69 (236)
                      +..|+.+.
T Consensus       112 i~al~~~i  119 (127)
T 1fgy_A          112 MKSIKASI  119 (127)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99997653

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=97.49  E-value=0.00015  Score=49.66  Aligned_cols=53  Identities=23%  Similarity=0.591  Sum_probs=38.9

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..++|.|.+.. ..  +.|.      .-+.+||-|.||. +.|+|||||+.....|+..|..|
T Consensus        40 ~~~~~~i~l~~-~~--~~~~------~~~~~~F~i~~~~-r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           40 YGCRGSICLSK-AV--ITPH------DFDECRFDISVND-SVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             TCCSEEEETTT-CE--EEEC------SSCSSEEEEEETT-EEEEEECCSSCCTHHHHHHHHHH
T ss_pred             ccceeeEecce-ee--eecC------cccceeEEEEeCC-eEEEEECCCHHHHHHHHHHHHhh
Confidence            45778876643 22  2332      2356899999985 57999999999999999988654

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=97.48  E-value=6.1e-05  Score=53.91  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             cceeEEeeecc---ccceeeeecChhHHHHHHHHHHHHHH
Q 041344           34 DGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHAAQL   70 (236)
Q Consensus        34 DgCCfyIgtpq---kK~yfLcAETp~aaraWvstl~Atql   70 (236)
                      ..+||.|-+|+   .+.|+|+|+|+.....|+..|+.+..
T Consensus        71 ~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~  110 (125)
T 1unq_A           71 RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD  110 (125)
T ss_dssp             STTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHh
Confidence            45899999863   56899999999999999999976543

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.45  E-value=0.00049  Score=48.45  Aligned_cols=56  Identities=13%  Similarity=0.073  Sum_probs=41.9

Q ss_pred             CcceeEEeecCc-eeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            7 TVKGTITFDENS-TIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         7 ~~kG~I~fDa~S-TitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+|.|.++-.. +|...|-      .-..+||-|-||..+.|+|+|+|......|+..|+.+
T Consensus        43 ~~~~~~~i~l~~~~v~~~~~------~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~   99 (107)
T 2cof_A           43 SKVAQQPLSLVGCEVVPDPS------PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   99 (107)
T ss_dssp             CSEEEEEECTTTCEEECCCB------TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCCCeeEEeccceEEEECCC------CCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            466777776543 3544331      2245799999998888999999999999999998754

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=97.41  E-value=0.00063  Score=49.34  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=42.2

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .|..+.|.|-+...+...+.+.+-.+    .-.||.|-++..+.|+|||+++..+..|+.-|+.+
T Consensus        39 ~~~~p~~~i~l~~~~~~~~~~~~~~~----r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~   99 (112)
T 3cxb_B           39 TDVIPLLSVNMGGEQCGGCRRANTTD----RPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQA   99 (112)
T ss_dssp             SCCSCSEEEETTC-CEEEEEECCCSS----CTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCccceEEecCCEEEeeeccCCCC----CCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            45667777766544332222222111    23599999999999999999999999999998654

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=97.38  E-value=0.0003  Score=48.29  Aligned_cols=34  Identities=15%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             ceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+||-|-||..+.|+|+|+|+.....|+..|++|
T Consensus        73 ~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           73 KHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             SSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            4799999999899999999999999999999764

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=97.32  E-value=0.00044  Score=52.27  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=38.3

Q ss_pred             CCcceeEEeecCce-eeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENST-IAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         6 ~~~kG~I~fDa~ST-itiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ..++|.|.++.... +.+.|..     .-..+||.|-||. +.|+|+|||+.....|+..|+.+.
T Consensus        52 ~~~~g~i~l~~~~~~~~~~~~~-----~~~~~~F~I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~~  110 (168)
T 2j59_M           52 TPSEEEQPISVNACLIDISYSE-----TKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESS  110 (168)
T ss_dssp             -------CEECSSCEEEECSSS-----CSCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             cccCCceEecccceEEEecccc-----CCCCCEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHH
Confidence            45788888777543 4444432     1124799999998 689999999999999999997653

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=97.25  E-value=0.0007  Score=51.17  Aligned_cols=64  Identities=9%  Similarity=0.155  Sum_probs=45.8

Q ss_pred             CCCCcceeEEeecCceeeeeccccC---CCCCccceeEEeeeccc------cceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFH---GLPKYDGCCFYIGTPQK------KDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~---g~~kYDgCCfyIgtpqk------K~yfLcAETp~aaraWvstl~At   68 (236)
                      .|..|.|.|.++ +.+|...+-+-.   +-+.-.++||.|-+++.      ..|+|+|+|+..+..|+..|+.+
T Consensus        44 ~d~~P~gsI~L~-~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~  116 (120)
T 4a6h_A           44 KDLVPVMSLALS-ECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL  116 (120)
T ss_dssp             TCCSCSEEEEGG-GEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECC-CCEEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHH
Confidence            477899999995 566665332211   00112678999998885      48999999999999999999754

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=97.25  E-value=0.00082  Score=49.96  Aligned_cols=60  Identities=13%  Similarity=0.253  Sum_probs=44.5

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+..+.|.|.++ +.+|...+ ..    .-..+||-|-||...+|+|+|+++.....|+.-|+.+.
T Consensus        64 ~~~~p~g~I~L~-~~~v~~~~-~~----~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i  123 (129)
T 2p0d_A           64 AGSRPESSVDLR-GAALAHGR-HL----SSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVI  123 (129)
T ss_dssp             ---CCSEEEECT-TCEEEECT-TS----CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCccEEEeC-CcEEEECC-CC----CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence            356899999987 44554421 11    11247999999999999999999999999999997654

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=97.21  E-value=0.00033  Score=55.06  Aligned_cols=65  Identities=11%  Similarity=0.173  Sum_probs=45.2

Q ss_pred             CCCCcceeEEeecCceeeee---ccccCC-------CCC--ccc--------eeEEeeeccccceeeeecChhHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAIS---PVNFHG-------LPK--YDG--------CCFYIGTPQKKDYFLCAETPGAARAWVS   63 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiS---PvNf~g-------~~k--YDg--------CCfyIgtpqkK~yfLcAETp~aaraWvs   63 (236)
                      .|..++|+|.++..+.|...   +-+-.+       .++  -+|        .||-|.||. +.|||||||+.....|+.
T Consensus        47 ~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~-rt~yl~A~s~~E~~eWi~  125 (169)
T 1btk_A           47 RRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKRWIH  125 (169)
T ss_dssp             EEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETT-CCEEEEESCHHHHHHHHH
T ss_pred             CCCceeeEEECcceEEEEeccCCCCcchhcccccccCcccccccccccccccccEEEEeCC-ceEEEEcCCHHHHHHHHH
Confidence            35678999999887665433   111110       000  011        799999987 689999999999999999


Q ss_pred             HHHHHH
Q 041344           64 TLHAAQ   69 (236)
Q Consensus        64 tl~Atq   69 (236)
                      .|+.+.
T Consensus       126 aI~~~i  131 (169)
T 1btk_A          126 QLKNVI  131 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998653

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=97.20  E-value=0.00056  Score=60.48  Aligned_cols=62  Identities=19%  Similarity=0.357  Sum_probs=46.2

Q ss_pred             CCCCcceeEEeecCcee-ee---eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTI-AI---SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STi-ti---SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .|..++|.|.+...+.+ .+   .|....+..  -.+||-|-||. +.|||||||+.....|+..|+.+
T Consensus       305 ~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~--~~~~F~I~t~~-rty~l~A~s~~e~~~Wi~aL~~~  370 (386)
T 3lju_X          305 LDAFARGEVFIGSKESGYTVLHGFPPSTQGHH--WPHGITIVTPD-RKFLFACETESDQREWVAAFQKA  370 (386)
T ss_dssp             TCSBCSEEEECCCGGGTCEEEESCCTTCCSCC--SCEEEEEECSS-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCcccceEEEeecceeeeeecccCCccccccC--CCcEEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Confidence            46678999999765554 23   333333221  15999999996 89999999999999999999754

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=97.14  E-value=0.00098  Score=54.19  Aligned_cols=57  Identities=25%  Similarity=0.367  Sum_probs=45.1

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+..++|.|.++..+.|.  +..      -..+||-|.||. +.|+|||||+..+..|+..|+.+.
T Consensus        98 ~~~~~~g~I~L~~~~~v~--~~~------~k~~~F~I~t~~-r~~~l~A~s~~e~~~Wv~aL~~~i  154 (228)
T 3tfm_A           98 SEEKLKGTVEVRSAKEII--DNT------NKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQVH  154 (228)
T ss_dssp             TCCSEEEEEEGGGCSEEE--EET------TTTSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCcceeEEEEcCCCEEec--cCC------CCCcEEEEEcCC-cEEEEEcCCHHHHHHHHHHHHHHH
Confidence            456789999998876544  322      135899998875 789999999999999999997655

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=97.10  E-value=0.0015  Score=55.03  Aligned_cols=62  Identities=18%  Similarity=0.355  Sum_probs=47.0

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLV   71 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlV   71 (236)
                      .+..+.|.|.++ +++|...|-+    ++ ..+||.|-||..+.|+|||+|+..+..|+..|+.+..-
T Consensus        64 ~~~~p~g~I~L~-~~~v~~~~~~----~k-k~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~  125 (263)
T 3a8p_A           64 QNSAPRCALFAE-DSIVQSVPEH----PK-KEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACAS  125 (263)
T ss_dssp             --CCCSEEEECT-TCEEEECTTC----SS-CSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccCccceEEcC-CcEEEECCcC----CC-CCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            356789999987 5566543322    11 36899999998899999999999999999999765543

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.00  E-value=0.0014  Score=47.03  Aligned_cols=35  Identities=23%  Similarity=0.487  Sum_probs=31.9

Q ss_pred             ceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344           35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus        35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .+||.|-||..+.|+|+|+++.....|+..|+.+.
T Consensus        82 ~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~  116 (123)
T 1wjm_A           82 KHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI  116 (123)
T ss_dssp             SSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            58999999998999999999999999999997653

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.00  E-value=0.0021  Score=45.83  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=28.6

Q ss_pred             eeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .||.|-|| .+.|+|+|+|+.....|+..|+.+
T Consensus        68 ~~F~I~~~-~r~~~l~a~s~~e~~~Wi~al~~~   99 (114)
T 2da0_A           68 KSFDLISH-NRTYHFQAEDEQDYVAWISVLTNS   99 (114)
T ss_dssp             SCEEEEET-TEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEcC-CcEEEEEcCCHHHHHHHHHHHHHH
Confidence            49999987 568999999999999999999754

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=96.91  E-value=0.0016  Score=55.08  Aligned_cols=66  Identities=14%  Similarity=0.202  Sum_probs=45.8

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEA   78 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEA   78 (236)
                      ..++|+|.++....|...|-      .-..+||.|-|| .+.|+|+|||......|+..|+.+..-.+.+..+
T Consensus        55 ~~p~g~I~L~~~~~V~~~~~------~~~~~~F~I~t~-~rty~l~A~se~e~~~Wi~aL~~~~~~~k~~~~~  120 (264)
T 1qqg_A           55 SAPKRSIPLESCFNINKRAD------SKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDG  120 (264)
T ss_dssp             SCCSEEEEGGGEEEEEEECC------SSCSSEEEEEES-SCEEEEECSSHHHHHHHHHHHHHHC---------
T ss_pred             cCcceEEEeeceEEEEeccC------CCCCcEEEEEEC-CEEEEEEeCCHHHHHHHHHHHHHHHHhccccccc
Confidence            47899999987665544331      234579999999 7889999999999999999998766555554443

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=96.71  E-value=0.0037  Score=54.12  Aligned_cols=60  Identities=22%  Similarity=0.438  Sum_probs=45.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeecc---------------------ccceeeeecChhHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQ---------------------KKDYFLCAETPGAARAW   61 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpq---------------------kK~yfLcAETp~aaraW   61 (236)
                      ..|..++|+|.++..+   +.++.    +.-...||.|-+|.                     .+.|+|||+|+.....|
T Consensus       247 ~~~~~p~G~I~L~~~~---v~~~~----~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~W  319 (347)
T 2r09_A          247 TTDKEPRGIIPLENLS---IREVE----DPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW  319 (347)
T ss_dssp             TTCSSCSEEEECTTCE---EEEEC----CSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHH
T ss_pred             CCccCCcEEEEcCCeE---EEEcc----CCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHH
Confidence            3567899999998654   33332    22345799999884                     36799999999999999


Q ss_pred             HHHHHHHH
Q 041344           62 VSTLHAAQ   69 (236)
Q Consensus        62 vstl~Atq   69 (236)
                      +..|+.+.
T Consensus       320 i~aI~~ai  327 (347)
T 2r09_A          320 MKSIKASI  327 (347)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998653

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=96.70  E-value=0.00055  Score=49.52  Aligned_cols=34  Identities=18%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             ceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+||.|-|+..++|+|+|+++.....|+..|+.+
T Consensus        84 ~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~  117 (122)
T 1dro_A           84 KHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ  117 (122)
T ss_dssp             TTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999765

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.66  E-value=0.0046  Score=46.30  Aligned_cols=60  Identities=17%  Similarity=0.379  Sum_probs=44.1

Q ss_pred             CCCCCcceeEEeecCceeee-eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAI-SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STiti-SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..|..+.|.|.+... +|+. .|..    ..-...||=|-+++ +.||||||++..+..|+..|..+
T Consensus        44 ~~d~~p~g~I~L~g~-~V~~~~~~~----~~~~~~~Fki~~~~-~~y~f~A~s~e~~~~Wl~al~~A  104 (112)
T 2coc_A           44 SQDGRLPRTIPLPSC-KLSVPDPEE----RLDSGHVWKLQWAK-QSWYLSASSAELQQQWLETLSTA  104 (112)
T ss_dssp             TTCSSSCSEECGGGC-EEECCCSSS----CCSSSEEEEEEETT-EEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCccCcceEEEcCCC-EEEecCccc----ccCCCCEEEEecCC-eEEEEEcCCHHHHHHHHHHHHHH
Confidence            457788999999877 4443 3321    11134699998775 46999999999999999988654

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=96.51  E-value=0.0055  Score=45.07  Aligned_cols=57  Identities=9%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc--cceeeeecChhHHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK--KDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk--K~yfLcAETp~aaraWvstl~At   68 (236)
                      .++|.|.+.... |...|-. ....+|   ||-|-+|+.  +.|+|+|+|+.....|+..|+.+
T Consensus        59 ~~~G~I~L~~~~-v~~~~~~-~~~k~~---~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a  117 (124)
T 2w2x_D           59 LCRGILDLNTYN-VVKAPQG-KNQKSF---VFILEPKQQGDPPVEFATDKVEELFEWFQSIREI  117 (124)
T ss_dssp             SCSEEEEGGGEE-EEECTTC-BTTBSE---EEEEEECC--CCCEEEEECCCHHHHHHHHHHHHH
T ss_pred             ccccEEECCCCE-EEEccCC-cCCCCE---EEEEECCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence            358999887543 4443321 122333   999999875  66999999999999999999855

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=96.47  E-value=0.005  Score=52.96  Aligned_cols=57  Identities=18%  Similarity=0.294  Sum_probs=41.4

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHHH
Q 041344            5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~At   68 (236)
                      +..+.|.|.++. ++|...+-      .---+||-|-||.. +.|+|+|||+.....|+..|+.+
T Consensus       316 ~~~~~~~i~l~~-~~v~~~~~------~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~  373 (385)
T 2q13_A          316 DVAGGLAMDIDN-CSVMAVDC------EDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI  373 (385)
T ss_dssp             CSSCEEEEECTT-CEEEEECC------TTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHH
T ss_pred             CcCCCceEEccc-eEEEeccc------cCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence            455667776654 34443321      12237999999986 88999999999999999998754

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=96.18  E-value=0.0055  Score=54.16  Aligned_cols=61  Identities=13%  Similarity=0.282  Sum_probs=43.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEee---eccccceeeeecChhHHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIG---TPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIg---tpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      +.|..|+|+|.++.- +++++|..+.     ..+||-|-   +...+.|||+|+++.....|+..|+++.
T Consensus       182 ~~~~~p~g~I~L~~~-~~~~~~~~~~-----~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          182 NDAKEPKAVMKIEHL-NATFQPAKIG-----HPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             ----CCSEEEEGGGE-EEEECHHHHT-----STTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCccCcccEEEeecc-EEEEcccccC-----CCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence            457889999999874 4445665433     35677664   3555889999999999999999998874

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=95.94  E-value=0.0084  Score=51.92  Aligned_cols=58  Identities=21%  Similarity=0.363  Sum_probs=40.3

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~At   68 (236)
                      ++..+.|.|.+. ..+|  .|..-.+ .   ..||-|-||.+ +.|+|||||+.....|+..|..+
T Consensus       338 ~~~~~~~~~~l~-~~~v--~~~~~~~-r---~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a  396 (407)
T 4h8s_A          338 GAVAGGLIQDLD-NCSV--MAVDCED-R---RYCFQITTPNGKSGIILQAESRKENEEWICAINNI  396 (407)
T ss_dssp             TCSSCCCCBCSS-CCEE--EEECCTT-C---SSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHH
T ss_pred             CCCCCCeEEECC-ceEE--EECCCCC-C---CceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence            444556665554 2344  4433222 2   36999999986 46999999999999999998654

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=95.79  E-value=0.026  Score=41.58  Aligned_cols=34  Identities=6%  Similarity=0.286  Sum_probs=31.5

Q ss_pred             ceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      -+||-|-||..++|+|+|+++.....|+..|+.+
T Consensus        88 k~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~a  121 (124)
T 3pp2_A           88 KNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG  121 (124)
T ss_dssp             SSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999865

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=95.63  E-value=0.014  Score=47.83  Aligned_cols=51  Identities=25%  Similarity=0.609  Sum_probs=38.7

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ..||.|.+|.+-.|.+  .|+.        ||+|.||- |.|+|++- ++-|..|+..+..++
T Consensus        88 ~~KGeIpls~~l~ve~--k~~~--------~F~I~Tp~-RtY~~~d~-~~~AqeWv~aI~~~~  138 (151)
T 1w1g_A           88 VLKGEIPWSQELRPEA--KNFK--------TFFVHTPN-RTYYLMDP-SGNAHKWCRKIQEVW  138 (151)
T ss_dssp             EEEEEECCCTTCEEEE--SSSS--------EEEEEETT-EEEEEECT-TSCHHHHHHHHHHHH
T ss_pred             cccceEecCCCeeEEE--cCCC--------EEEEECCC-ceEEEEcC-ccCHHHHHHHHHHHH
Confidence            4688888886544443  3332        99999998 89999986 889999998775543

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=95.49  E-value=0.046  Score=43.20  Aligned_cols=70  Identities=14%  Similarity=0.192  Sum_probs=50.5

Q ss_pred             CCCCCCcceeEEeecCceeee-eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 041344            2 RRNEPTVKGTITFDENSTIAI-SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEA   78 (236)
Q Consensus         2 ~R~e~~~kG~I~fDa~STiti-SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEA   78 (236)
                      ++.+..+.|.|.++.. ||.. +|..=.   ...-.||-|.+|.+ .|+|+||++..-..||.-|.-+.  .++||++
T Consensus        46 ~~~~~~p~G~I~L~g~-tV~~~~~~~~~---~~~k~~F~~v~~~~-ty~~~Adseee~~~WikAi~~A~--~~~~~~~  116 (126)
T 1wi1_A           46 REKKAEPQELLQLDGY-TVDYTDPQPGL---EGGRAFFNAVKEGD-TVIFASDDEQDRILWVQAMYRAT--GQSHKPV  116 (126)
T ss_dssp             CSSSSCCSEEEECSSC-EEEECCCCSSC---CSCSSEEEEECSSC-EEEEECSSHHHHHHHHHHHHHHH--TCSSCCC
T ss_pred             cccCCCCceEEECCCc-EEEEecCCccc---ccCceEEEEecCCc-eEEEEcCCHHHHHHHHHHHHHHh--ccccCCC
Confidence            4678889999999984 6653 343211   12235998888855 59999999999999999885443  3777764

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.45  E-value=0.025  Score=45.61  Aligned_cols=55  Identities=18%  Similarity=0.466  Sum_probs=45.8

Q ss_pred             CcceeEEeecCceeeeeccccC-CCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFH-GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~-g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      .+|.+|.+..  -|+|+|+|-. +-|| |-=+|.|-|++ |.|+|+||++ ....|+..|-
T Consensus        62 ~~rrVIrLsd--CisV~~~~~e~~~pk-~~~aF~l~T~e-r~~~laAe~~-E~~~Wi~~ic  117 (127)
T 2d9w_A           62 AARKVIRLSD--CLRVAEAGGEASSPR-DTSAFFLETKE-RLYLLAAPAA-ERGDWVQAIC  117 (127)
T ss_dssp             CCEEEECGGG--EEEEEECCSCSSSCS-SCEEEEEEESS-CEEEEEECHH-HHHHHHHHHH
T ss_pred             CCceEEEhhh--CCeEecccCccCCCC-cceEEEEEeCC-cEEEEEeCcH-HHHHHHHHHH
Confidence            4678888764  6788899988 8888 44789999998 7899999987 6899998873

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=94.75  E-value=0.076  Score=39.81  Aligned_cols=60  Identities=22%  Similarity=0.263  Sum_probs=44.5

Q ss_pred             CcceeEEeecCceeeeeccc----cCCCCCccceeEEeeecc-----ccceeeeecChhHHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVN----FHGLPKYDGCCFYIGTPQ-----KKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvN----f~g~~kYDgCCfyIgtpq-----kK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+.|.|  |-+....|+||.    ++-.++-..|+|-|.+++     .+.|||.|+++..-..||..|+..
T Consensus        45 ~p~~~I--dl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~  113 (117)
T 2rov_A           45 NPYMVL--DIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK  113 (117)
T ss_dssp             CCSEEE--CGGGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CceEEE--ECcccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            567766  445666777773    334445447999998743     578999999999999999998753

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=93.34  E-value=1.3  Score=30.27  Aligned_cols=81  Identities=17%  Similarity=0.271  Sum_probs=49.5

Q ss_pred             HHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 041344          141 MKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA-----AASAAHTMDEQRRIACAEIERINKESTKQLETC  215 (236)
Q Consensus       141 mkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa-----AAsaaH~~de~r~~~~sEierL~~~~~~q~~~~  215 (236)
                      |...++|..++|++.|.+++.--..|+++-+.|....+.-..     |+.+-+..=.+.+....++..+-.+...++..+
T Consensus         3 M~~~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~   82 (99)
T 3zbh_A            3 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNS   82 (99)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999998888877665422     233333333344555555555555555555555


Q ss_pred             hhhhhh
Q 041344          216 VLKVNF  221 (236)
Q Consensus       216 ~l~lk~  221 (236)
                      .-...+
T Consensus        83 a~~~~~   88 (99)
T 3zbh_A           83 ATILED   88 (99)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=93.27  E-value=0.095  Score=39.55  Aligned_cols=60  Identities=18%  Similarity=0.300  Sum_probs=43.1

Q ss_pred             cceeEEeecCceeeee---cc--ccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHHH
Q 041344            8 VKGTITFDENSTIAIS---PV--NFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         8 ~kG~I~fDa~STitiS---Pv--Nf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~At   68 (236)
                      .+|.|.++.-..|..-   |.  |+. .+--+.|||-|..-.. |.+.|.|.++..++.||..|++-
T Consensus        54 ~~~~i~i~~I~eIr~G~~s~~~~~~~-~~~~~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L  119 (131)
T 1mai_A           54 ESQLFSIEDIQEVRMGHRTEGLEKFA-RDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKI  119 (131)
T ss_dssp             TTTEEEGGGEEEEEESSCSHHHHHHC-TTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcEEEHhhhHHHHCCCCCHHHHhhh-hcCCccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence            5677777766655543   22  111 1112789999988775 78999999999999999999864

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=92.81  E-value=0.11  Score=44.52  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=28.6

Q ss_pred             eeEEeeecccc-----ceeeeecChhHHHHHHHHHHHHHH
Q 041344           36 CCFYIGTPQKK-----DYFLCAETPGAARAWVSTLHAAQL   70 (236)
Q Consensus        36 CCfyIgtpqkK-----~yfLcAETp~aaraWvstl~Atql   70 (236)
                      -||.|-.++..     -||||||++.....|++.||-++-
T Consensus       201 ~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~  240 (256)
T 3hk0_A          201 HGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY  240 (256)
T ss_dssp             EEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            48888755442     299999999999999999998864

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=92.78  E-value=0.11  Score=45.43  Aligned_cols=34  Identities=24%  Similarity=0.611  Sum_probs=28.6

Q ss_pred             eEEeeecccc-----ceeeeecChhHHHHHHHHHHHHHH
Q 041344           37 CFYIGTPQKK-----DYFLCAETPGAARAWVSTLHAAQL   70 (236)
Q Consensus        37 CfyIgtpqkK-----~yfLcAETp~aaraWvstl~Atql   70 (236)
                      ||.|-.|++.     -||||||++.....|+..||-++-
T Consensus       228 ~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~  266 (281)
T 4gmv_A          228 CLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY  266 (281)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence            8888777642     399999999999999999988764

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=92.53  E-value=0.18  Score=40.35  Aligned_cols=60  Identities=17%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeecccc-------ceeeeecChhHHHHHHHHH-HHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKK-------DYFLCAETPGAARAWVSTL-HAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK-------~yfLcAETp~aaraWvstl-~At   68 (236)
                      .|..++|.|-+|..+---+.| +|.+    .-=||-|-+|-.+       .|+|||+|+..-..|++-+ ||.
T Consensus        49 ~eke~~G~IpL~~~~vr~v~~-~~~~----rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~  116 (125)
T 1dyn_A           49 EEKEKKYMLSVDNLKLRDVEK-GFMS----SKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG  116 (125)
T ss_dssp             TCSCEEEEEECTTEEEEECCS-CSSS----SCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             cccccceEEECCCceEeccCC-CCCC----CceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhCc
Confidence            477899999997655333333 2222    3459999888643       7999999999999999988 764

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=92.38  E-value=0.14  Score=39.90  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=39.8

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeec-cccceeeeecChhHHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTP-QKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtp-qkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..|.|.|.+ .+.+|.. | .   .|+ .-=||.|-+| ....|.|.|+|+..+..|+.-|+.+
T Consensus        54 ~~P~~~i~L-~g~~V~~-~-e---~~~-~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a  110 (126)
T 2dtc_A           54 STPGKKVSI-VGWMVQL-P-D---DPE-HPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDA  110 (126)
T ss_dssp             SSCSEEEEC-TTCEEEC-C-C---CTT-STTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCCCceEEe-CCCEEEe-c-C---CCC-CCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHH
Confidence            356777776 3455542 1 1   121 1238999999 5677999999999999999998764

>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A

Probab=90.33  E-value=3.2  Score=28.64  Aligned_cols=81  Identities=11%  Similarity=0.160  Sum_probs=52.6

Q ss_pred             HHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 041344          141 MKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA-----AASAAHTMDEQRRIACAEIERINKESTKQLETC  215 (236)
Q Consensus       141 mkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa-----AAsaaH~~de~r~~~~sEierL~~~~~~q~~~~  215 (236)
                      |+-.++|..|+|++.|.+++.--..|.++-+.|...-+.-.+     |+.+-+..=.+.+-....+..+-.+..+++...
T Consensus         2 MM~~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~   81 (98)
T 3gwk_C            2 AMSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKV   81 (98)
T ss_dssp             HHHHBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999988888888888776655432     222223333334444444445555555555555


Q ss_pred             hhhhhh
Q 041344          216 VLKVNF  221 (236)
Q Consensus       216 ~l~lk~  221 (236)
                      .-+..+
T Consensus        82 a~~~~~   87 (98)
T 3gwk_C           82 ADIIEQ   87 (98)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=88.21  E-value=0.43  Score=40.47  Aligned_cols=63  Identities=13%  Similarity=0.140  Sum_probs=39.0

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccce---eeeecChhHHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDY---FLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~y---fLcAETp~aaraWvstl~Atq   69 (236)
                      .+..++|.|.+...+.+...++.-.+   --.+||.|-+|+.+.+   .+++|||.....|+..|+.+.
T Consensus        42 ~~~~~~~~i~l~~~~~~~~~~~~~~~---~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i  107 (446)
T 4ejn_A           42 PQDVDQREAPLNNFSVAQCQLMKTER---PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA  107 (446)
T ss_dssp             C-------CCCGGGBCTTCEEEEECS---SSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCCccCcccccCccccceeecCCCC---CCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhh
Confidence            34456677777665544333322221   1246999999988776   789999999999999997763

>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}

Probab=87.99  E-value=4.3  Score=29.00  Aligned_cols=81  Identities=12%  Similarity=0.079  Sum_probs=56.7

Q ss_pred             HHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041344          140 IMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA-------AASAAHTMDEQRRIACAEIERINKESTKQL  212 (236)
Q Consensus       140 imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa-------AAsaaH~~de~r~~~~sEierL~~~~~~q~  212 (236)
                      .|...++|..++|++.+.+|+.-...|.+.-+.|.-..+.-.+       |+.+-+..-.+++....++..+-.++..++
T Consensus         4 ~Ma~~i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l   83 (103)
T 4i0x_B            4 HVESEFSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAA   83 (103)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778899999999999999999988888777766544443322       455556667777888888888888887777


Q ss_pred             hHhhhhhh
Q 041344          213 ETCVLKVN  220 (236)
Q Consensus       213 ~~~~l~lk  220 (236)
                      ..+.-...
T Consensus        84 ~~a~~~y~   91 (103)
T 4i0x_B           84 RTAHGAYS   91 (103)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHHH
Confidence            76654433

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=87.97  E-value=0.41  Score=41.74  Aligned_cols=37  Identities=11%  Similarity=0.367  Sum_probs=32.9

Q ss_pred             eeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHH
Q 041344           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVL   72 (236)
Q Consensus        36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVl   72 (236)
                      .||.|-||...+|+|.|+++..+..|+..|+.+....
T Consensus        90 ~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~~  126 (279)
T 3a8n_A           90 FVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAA  126 (279)
T ss_dssp             SCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence            5999999999999999999999999999998665433

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=87.55  E-value=0.78  Score=34.04  Aligned_cols=35  Identities=31%  Similarity=0.382  Sum_probs=27.0

Q ss_pred             CCCcHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 041344          134 PMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSE  175 (236)
Q Consensus       134 ~~Ddl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLse  175 (236)
                      .|..+.-+++.|+.||||       ||.||..|+++=.+|.|
T Consensus        17 ~mgti~eLq~~L~~K~eE-------Lr~kd~~I~eLEk~L~e   51 (72)
T 3nmd_A           17 GRGSLRDLQYALQEKIEE-------LRQRDALIDELELELDQ   51 (72)
T ss_dssp             --CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            367788889999999998       56688888888777765

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=85.04  E-value=1.2  Score=37.16  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             cceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus        34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ..++|.|..+..+.|.|+|.|+..-..|+..|+-++
T Consensus       313 ~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~  348 (354)
T 1dbh_A          313 YKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ  348 (354)
T ss_dssp             CCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence            358999998876789999999999999999997664

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=82.76  E-value=2.4  Score=35.90  Aligned_cols=38  Identities=26%  Similarity=0.579  Sum_probs=31.2

Q ss_pred             CccceeEEeee--cc--ccceeeeecChhHHHHHHHHHHHHH
Q 041344           32 KYDGCCFYIGT--PQ--KKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus        32 kYDgCCfyIgt--pq--kK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      .-|.|+|.|-.  |.  .+.|.|+|.|+..-..|+..|+-+.
T Consensus       276 ~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  317 (354)
T 2rgn_B          276 QGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQIL  317 (354)
T ss_dssp             GGCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence            34679999976  32  4679999999999999999997654

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=80.07  E-value=3.6  Score=33.86  Aligned_cols=49  Identities=16%  Similarity=0.299  Sum_probs=34.3

Q ss_pred             eeeeccccCCCCCccceeEEeee---c-cccceeeeecChhHHHHHHHHHHHH
Q 041344           20 IAISPVNFHGLPKYDGCCFYIGT---P-QKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        20 itiSPvNf~g~~kYDgCCfyIgt---p-qkK~yfLcAETp~aaraWvstl~At   68 (236)
                      |.++-+.+...+.-|.|+|.|-+   | ..+.|-|+|.|+..-..|+..|+-+
T Consensus       254 i~l~~~~v~e~~~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~  306 (311)
T 1nty_A          254 LFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREV  306 (311)
T ss_dssp             EEGGGEEEECCCTTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHH
T ss_pred             eeccceeeEEccCCCCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHH
Confidence            33444444333334679999976   2 2355889999999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	2e-06
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	8e-06
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	5e-05
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	8e-05
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	2e-04
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	3e-04
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	3e-04
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	8e-04
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	0.001
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	0.001
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	0.001
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	0.004

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 14/66 (21%), Positives = 24/66 (36%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
           R +   KG I   E   +A            D   F+     ++ Y  CA+   +A+ WV
Sbjct: 44  RMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWV 103

Query: 63  STLHAA 68
             + + 
Sbjct: 104 DRIQSC 109

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 8e-06
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 9   KGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            G I        ++   +     + +     I T  +  YFL A TP     W+  +  A
Sbjct: 44  LGAIHLRGCVVTSVESNSNGRKSEEENLFEII-TADEVHYFLQAATPKERTEWIKAIQMA 102

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 9   KGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
           KG    D       + +   G       CF I  P K+ Y   A +P  A  WV  L   
Sbjct: 148 KGEFAIDGYDVRMNNTLRKDGKKDC---CFEICAPDKRIYQFTAASPKDAEEWVQQL--- 201

Query: 69  QLVLK 73
           + +L+
Sbjct: 202 KFILQ 206

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 8e-05
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 2/62 (3%)

Query: 9   KGTITFDENSTIAIS--PVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66
            G  +   +   A+    V         G  F + T     Y++ A +      W+  + 
Sbjct: 54  VGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIK 113

Query: 67  AA 68
             
Sbjct: 114 KL 115

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 9   KGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            G++     +     P    G        F    P  + Y L A+T    R W+  L  A
Sbjct: 50  LGSVLLPSYNIRPDGPGAPRGRR----FTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 105

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 32  KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSA 88
              G  F+    +       ++       WV  ++ A    ++HK    + SG  S 
Sbjct: 72  LEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRA--TGQSHKPVPPTQSGPSSG 126

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
                 +  ++   ++ I +       +P+ D   F +      +Y L         +WV
Sbjct: 64  VPPKASRPKVSIPLSAIIEVRTTMPLEMPEKD-NTFVLKVENGAEYILETIDSLQKHSWV 122

Query: 63  STLHAA 68
           + +   
Sbjct: 123 ADIQGC 128

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 32  KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLK 73
                CF + +  ++ Y   A +P  AR WV  +     +LK
Sbjct: 65  SKKESCFELTSQDRRTYEFTATSPAEARDWVDQI---SFLLK 103

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 10  GTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69
           G    D       + +   G       CF I  P K+ Y   A +P  A  WV  L   +
Sbjct: 54  GEFAIDGYDVRMNNTLRKDGKKDC---CFEICAPDKRIYQFTAASPKDAEEWVQQL---K 107

Query: 70  LVLK 73
            +L+
Sbjct: 108 FILQ 111

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            F I T   + +++ A++P    +W+  +  A
Sbjct: 67 NLFEIVTT-SRTFYVQADSPEEMHSWIKAVSGA 98

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 2/68 (2%)

Query: 3   RNEPTVKGTITFDENSTIAI--SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           +        +TF    +  +  + +              +       + L A        
Sbjct: 50  QKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQ 109

Query: 61  WVSTLHAA 68
           WV++L A 
Sbjct: 110 WVTSLKAQ 117

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)

Query: 31  PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA--QLVLKAHKEAVNSLS 83
            K     F +    K  Y L A++      W++ L+         A +E  N  S
Sbjct: 85  NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFEAAMQEKRNGDS 139

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	98.73
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	98.63
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.31
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	98.31
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.1
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.0
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	97.99
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	97.98
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	97.98
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	97.96
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	97.95
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	97.93
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	97.89
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	97.87
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	97.85
d1wi1a_	126	Calcium-dependent activator protein for secretion,	97.77
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	97.74
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	97.73
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	97.7
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	97.67
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	97.55
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	97.46
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	97.39
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	97.36
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	97.31
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	97.16
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	97.11
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	97.01
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	96.94
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	96.89
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	96.89
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	96.85
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	96.76
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	96.6
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	96.01
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	94.59
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	92.66
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	91.53
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	89.07
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	86.63
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	84.66

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=5.4e-09  Score=71.46  Aligned_cols=66  Identities=21%  Similarity=0.394  Sum_probs=56.8

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+|..++|+|.++..+.|.+...+.......+.+||++.++..+.|||||||+...+.||..|+.+
T Consensus        44 ~~~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~a  109 (117)
T d1v5ua_          44 RMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             SSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             ccccCcceEEEecceEEEeecccccccccccccceEEEeeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            467889999999999989888888888777777777777777789999999999999999999754

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.2e-08  Score=65.17  Aligned_cols=65  Identities=23%  Similarity=0.322  Sum_probs=48.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      +.+..++|.|.++....+. .+.+..+.++...+||+|.+|..+.|+|||||+.....|+..|+.+
T Consensus        38 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~W~~ai~~a  102 (104)
T d2i5fa1          38 AGAEDPLGAIHLRGCVVTS-VESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  102 (104)
T ss_dssp             TSCSSCSEEEECTTCEEEE-ECC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccCccceEeecceEEEE-eccCcccccccCccEEEEECCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            5678899999886655544 4456777777888999999999999999999999999999999876

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=6.2e-07  Score=67.65  Aligned_cols=63  Identities=27%  Similarity=0.499  Sum_probs=49.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      +.+..++|.|.++..+.+.+.+....+-.   .+||.|.||.++.|+|||||+..+..|+..|+.+
T Consensus       142 ~~~~~~~~~i~L~~~~~~~~~~~~~~~~~---~~~F~i~~~~~r~~~f~a~s~~e~~~Wi~al~~~  204 (209)
T d1u5ea1         142 DKDKQQKGEFAIDGYDVRMNNTLRKDGKK---DCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI  204 (209)
T ss_dssp             TTCSSCSEEEECTTCEEEECGGGCSSTTG---GGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCccceEEEecceeeeeccccccccCC---CcEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            45677899999988766665544333222   4899999999999999999999999999888654

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.6e-07  Score=60.30  Aligned_cols=59  Identities=22%  Similarity=0.415  Sum_probs=47.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..|..+.|.|.++..+.|...+-.      ...+||.|.||. +.|+|||||+.....|+..|+.+
T Consensus        38 ~~~~~~~g~i~L~~~~~v~~~~~~------~~~~~F~i~~~~-r~~~l~a~s~~~~~~Wi~ai~~~   96 (100)
T d1faoa_          38 QMSPEPIRILDLTECSAVQFDYSQ------ERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRWK   96 (100)
T ss_dssp             TTCSSCSEEEEGGGCCEEEEECSS------SSSSEEEEEETT-EEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCCccCceEEechheEEEEecccc------ccccccccccCC-eEEEEEeCCHHHHHHHHHHHHHH
Confidence            467789999999887766555421      235799999996 67999999999999999999865

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.2e-06  Score=56.77  Aligned_cols=63  Identities=16%  Similarity=0.273  Sum_probs=47.5

Q ss_pred             CCCCcceeEEeecCceeeeec--cccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISP--VNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSP--vNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      .+..++|.|.++....+.++.  ..+........+||.|-++..+.|||||||+.....|+.-|+
T Consensus        49 ~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~  113 (116)
T d1x1ga1          49 EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIK  113 (116)
T ss_dssp             CCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHH
T ss_pred             ccccceeEEEcCCCEEEEecccCcccccccccccceeEEEeCCCeEEEEECCCHHHHHHHHHHHH
Confidence            445789999997764433332  233333445578999999999999999999999999999886

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1e-05  Score=54.82  Aligned_cols=63  Identities=25%  Similarity=0.438  Sum_probs=47.4

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+..++|.|.+...+.+....   .....--.+||.|.++..+.|+|||+|+.....|+..|+.+
T Consensus        47 ~~~~~p~g~i~L~~~~~~~~~~---~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~  109 (111)
T d1u5fa1          47 DKDKQQKGEFAIDGYDVRMNNT---LRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI  109 (111)
T ss_dssp             TTCSSCSEEEECTTCEEEECTT---SCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccCcceEEEecccEEEeecc---ccccccccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            3456788999987765443322   22222345899999999999999999999999999998754

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.99  E-value=1.2e-05  Score=56.06  Aligned_cols=68  Identities=13%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVN   80 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEAvn   80 (236)
                      .++..++|.|.++..++|..++..    .+   =||.|.++..+.|+|||||+.....|+..|+.+   .+-+++-+.
T Consensus        43 ~~~~~~~~~i~l~~~~~v~~~~~~----~~---~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~a---~~~~~~~~~  110 (119)
T d1omwa2          43 GEGEAPQSLLTMEEIQSVEETQIK----ER---KCLLLKIRGGKQFVLQCDSDPELVQWKKELRDA---YREAQQLVQ  110 (119)
T ss_dssp             CTTSCCCEEEEGGGEEEEEEEESS----SC---EEEEEEETTSCEEEEECSSHHHHHHHHHHHHHH---HHHHHHHHT
T ss_pred             ecccccCccceecccccccccccc----cc---ceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH---HHHHHHHHH
Confidence            356677899999888777665432    22   278999998899999999999999999999754   334444443

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=6.2e-06  Score=54.66  Aligned_cols=62  Identities=16%  Similarity=0.245  Sum_probs=49.3

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ++..++|.|.++....+...+....   ....+||-|.+|. +.|+|||+|+.....|+..|+.+.
T Consensus        38 ~~~~~~~~i~l~~~~~~~~~~~~~~---~~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~aI~~ai   99 (103)
T d1eaza_          38 LEKEPLRVIPLKEVHKVQECKQSDI---MMRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVSGAI   99 (103)
T ss_dssp             TCSSCSEEEEGGGCCEEEECTTHHH---HTCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCcccceEEEccceEEeeccccccc---cccceEEEEEeCC-EEEEEEeCCHHHHHHHHHHHHHHH
Confidence            4567899999999987765554332   2245799999985 689999999999999999998764

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1e-05  Score=53.73  Aligned_cols=61  Identities=25%  Similarity=0.347  Sum_probs=44.0

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+..++|.|.+... +|.  ++...... -..+||.|.++..+.|+|||+|+...+.|+..|+.|
T Consensus        45 ~~~~~~~~i~l~~~-~v~--~~~~~~~~-~~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A  105 (107)
T d1upqa_          45 REESVLGSVLLPSY-NIR--PDGPGAPR-GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA  105 (107)
T ss_dssp             TCCSCCEEEEGGGC-EEE--ECCSSCTT-SSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccccceecccce-EEE--EeccCccc-CcceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            45567787777543 333  33222222 235799999999999999999999999999999654

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=1.3e-05  Score=54.05  Aligned_cols=61  Identities=18%  Similarity=0.352  Sum_probs=47.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc--cceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK--KDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk--K~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+..++|+|.++. .+|...|.+..+-+ |   ||.|.+|+.  +.|+||||++.....|+..|+-+
T Consensus        35 ~~~~~~~~~i~l~~-~~v~~~~~~~~~~~-~---~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~   97 (101)
T d2fjla1          35 TSSDLLRGVLDVPA-CQIAIRPEGKNNRL-F---VFSISMPSVAQWSLDVAADSQEELQDWVKKIREV   97 (101)
T ss_dssp             CSCTCCCEEECSTT-CEEEEETTCSSSCS-C---EEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             cccceecceEEcCC-ceeEeeeeeccccc-c---eeEEeccccccEEEEEEeCCHHHHHHHHHHHHHH
Confidence            45677899999975 56666676554433 2   899999875  56999999999999999999654

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=97.95  E-value=8.4e-06  Score=54.65  Aligned_cols=57  Identities=11%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      +.+.|.|.+. .+++...|..    ++ .-.||.|-+|..+.|+|||+|+..++.|+..|++|
T Consensus        50 ~~~~~~i~l~-~~~~~~~~~~----~~-~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          50 YHSEVPVSLK-EAICEVALDY----KK-KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             SSSCCCEECT-TCEEEECSSC----CS-SSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCcceeEEec-cceeeecccc----cc-CcceEeecccCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            3455555554 3444444421    22 23799999999999999999999999999999764

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=7.4e-06  Score=59.02  Aligned_cols=59  Identities=20%  Similarity=0.363  Sum_probs=47.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      +.+..++|+|.++..+.+...+       +-..-||.|.++..+.|+|||||+.....|+..|..+
T Consensus        64 ~~~~~~~g~i~l~~~~~~~~~~-------~~~~~~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~  122 (150)
T d1wg7a_          64 KISKEPKGSIFLDSCMGVVQNN-------KVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI  122 (150)
T ss_dssp             CCSSCCSEEECTTTCCEECCCC-------SSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCc-------cccceEEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence            4567789999998776543322       2345799999999999999999999999999999754

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.5e-05  Score=52.52  Aligned_cols=61  Identities=16%  Similarity=0.284  Sum_probs=44.8

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..|..+.|.|.+...+.+...|.    ...-...||-|.+|. +.|+||||++.....|+..|+.|
T Consensus        37 ~~~~~~~~~i~l~~~~~~~~~~~----~~~~~~~~F~i~~~~-r~~~l~A~s~~e~~~Wi~aL~~A   97 (99)
T d2coca1          37 SQDGRLPRTIPLPSCKLSVPDPE----ERLDSGHVWKLQWAK-QSWYLSASSAELQQQWLETLSTA   97 (99)
T ss_dssp             TTCSSSCSEECGGGCEEECCCSS----SCCSSSEEEEEEETT-EEEEEEESSHHHHHHHHHHHHHH
T ss_pred             Cccccccccccccceeeeecccc----cccCCceEEEEEcCC-cEEEEECCCHHHHHHHHHHHHHh
Confidence            35677889998876543332222    122346899999885 57999999999999999999765

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2.4e-05  Score=52.30  Aligned_cols=62  Identities=21%  Similarity=0.449  Sum_probs=46.7

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+..++|+|.++.. ++...+  -.........||.|-|+..+.|+|||||+..+..|+..|..+
T Consensus        40 ~~~~~~~~i~l~~~-~~~~~~--~~~~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~ai~~~  101 (106)
T d1u5da1          40 KSKQPKGTFLIKGY-SVRMAP--HLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL  101 (106)
T ss_dssp             TCSSCSEEEECTTC-EEEECG--GGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccccccccCCc-eEeecc--ccccccCCceeEEEEcCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            46678999998643 333333  333334456799999999999999999999999999888643

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=1.1e-05  Score=58.24  Aligned_cols=62  Identities=13%  Similarity=0.259  Sum_probs=45.8

Q ss_pred             CCCCCcceeEEeecCceee-eeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIA-ISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STit-iSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+..++|.|.+.....+. ..|.+...    .-+||.|-||..+.|+|||+|+..++.|+..|..+
T Consensus        66 ~~~~k~~g~i~l~~~~~~~~~~~~~~~~----~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~a  128 (136)
T d1v5ma_          66 PKASRPKVSIPLSAIIEVRTTMPLEMPE----KDNTFVLKVENGAEYILETIDSLQKHSWVADIQGC  128 (136)
T ss_dssp             TTSSSCSSCEETTTCCBCCCCCCSSSCC----CTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccCcCcceecccceeeeeeccccCCC----CCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            3456778888776544432 23443332    23899999999999999999999999999988754

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=3.7e-05  Score=53.05  Aligned_cols=69  Identities=12%  Similarity=0.112  Sum_probs=45.9

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHHh
Q 041344            5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAV   79 (236)
Q Consensus         5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEAv   79 (236)
                      +..++|.|.++....+...|.+-..   -..|||.|-+ ..+.|||||||......|+..|+.+.  .++|+...
T Consensus        49 ~~~~~~~i~l~~~~~~~~~~~~~~~---~~~~~~~i~~-~~r~~~f~A~s~~e~~~Wv~al~~a~--~~~~~~~~  117 (126)
T d1wi1a_          49 KAEPQELLQLDGYTVDYTDPQPGLE---GGRAFFNAVK-EGDTVIFASDDEQDRILWVQAMYRAT--GQSHKPVP  117 (126)
T ss_dssp             SSCCSEEEECSSCEEEECCCCSSCC---SCSSEEEEEC-SSCEEEEECSSHHHHHHHHHHHHHHH--TCSSCCCC
T ss_pred             cccceeeeeeceeeeeecccccccc---ccceeEEecc-CCeEEEEEECCHHHHHHHHHHHHHHH--HhhcCCCC
Confidence            4567899988877666555553222   2234555554 55789999999999999999996442  24444433

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.4e-05  Score=53.24  Aligned_cols=65  Identities=23%  Similarity=0.311  Sum_probs=50.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceee-----------eecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFL-----------CAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfL-----------cAETp~aaraWvstl~At   68 (236)
                      ..|..++|.|.++....|..++.......+-..+||-|-||.+ .||+           |+|++..++.|+.-|+.|
T Consensus        35 ~~~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~r-tyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A  110 (112)
T d2coaa1          35 NTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANA-TYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA  110 (112)
T ss_dssp             SSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSC-CCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCCccceEEeeeccccccccccccccccCCCccEEEEEeCCe-EEEEecCCccccccccccChHHHHHHHHHHHHh
Confidence            4577899999999988887665554444555679999999985 5555           778899999999888764

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=97.73  E-value=1.7e-05  Score=54.44  Aligned_cols=34  Identities=24%  Similarity=0.519  Sum_probs=31.7

Q ss_pred             ceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+||.|.++..+.|+|||||+...+.|+..|+.+
T Consensus        82 ~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a  115 (123)
T d1wjma_          82 KHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA  115 (123)
T ss_dssp             SSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999755

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.3e-05  Score=52.43  Aligned_cols=57  Identities=12%  Similarity=0.109  Sum_probs=43.5

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      +..++|.|.++.. +|...|.      .-..+||.|.++..+.|+|+|+|+.....|+..|+++
T Consensus        36 ~~~~~~~i~l~~~-~v~~~~~------~~~~~~f~~~~~~~~~~~l~A~s~~e~~~Wi~~L~~~   92 (95)
T d2cofa1          36 SKVAQQPLSLVGC-EVVPDPS------PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   92 (95)
T ss_dssp             CSEEEEEECTTTC-EEECCCB------TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccccccccce-EEEeccc------ccceecceeccccceeEEeeCCCHHHHHHHHHHHHHH
Confidence            3456788877644 3443332      2235899999999999999999999999999999865

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=2.9e-05  Score=57.88  Aligned_cols=61  Identities=11%  Similarity=0.162  Sum_probs=47.9

Q ss_pred             CcceeEEeecCceeeeeccccCCC--------------------CCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGL--------------------PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~--------------------~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      .++|.|.++..+.|.+.|..-.+-                    +...+.||-|.||.+ .|||||||....+.||+.|+
T Consensus        50 ~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~t~~r-t~~l~A~s~eE~~~WI~aL~  128 (169)
T d1btka_          50 SKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEG-PLYVFSPTEELRKRWIHQLK  128 (169)
T ss_dssp             EEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETTC-CEEEEESCHHHHHHHHHHHH
T ss_pred             CccceEeccceEEEEeecccCCCCccccccccccccccccccccccccCcceEEEeCCc-EEEEECCCHHHHHHHHHHHH
Confidence            478999999988887765432211                    124578999999874 79999999999999999997


Q ss_pred             HH
Q 041344           67 AA   68 (236)
Q Consensus        67 At   68 (236)
                      .+
T Consensus       129 ~~  130 (169)
T d1btka_         129 NV  130 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.67  E-value=8.5e-06  Score=56.27  Aligned_cols=39  Identities=15%  Similarity=0.185  Sum_probs=34.6

Q ss_pred             CCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           30 LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        30 ~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .++-..+||.|-++.++.|||||+|+...+.|+..|+++
T Consensus        79 ~~~~~~~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~  117 (122)
T d1droa_          79 DYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ  117 (122)
T ss_dssp             SSSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred             ccccccceEEEECCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            344556899999999999999999999999999999875

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00011  Score=49.70  Aligned_cols=61  Identities=21%  Similarity=0.281  Sum_probs=45.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+..++|.|.++....+..++-.     .....||.|-++..+.|+|||+|+..+..|+..|+.+
T Consensus        39 ~~~~~p~~~i~l~~~~~~~~~~~~-----~~~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~a   99 (113)
T d1plsa_          39 KSDNSPKGMIPLKGSTLTSPCQDF-----GKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKA   99 (113)
T ss_dssp             TTCSSCSEEEESSSCCEESSCCSS-----CCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCccccceEEECccCeEEeeeccc-----CCcceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence            356778999998876544443322     2234677788887889999999999999999998744

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00013  Score=49.30  Aligned_cols=54  Identities=26%  Similarity=0.373  Sum_probs=41.9

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+..+.|+|.+.....+...          +..||.|-||. +.|+|||+|+..+..|+..|..+
T Consensus        37 ~~~~~~~~i~L~~~~~~~~~----------~~~~f~i~~~~-~~~~l~a~s~~e~~~Wi~ai~~~   90 (102)
T d2coda1          37 KEMYSKGIIPLSAISTVRVQ----------GDNKFEVVTTQ-RTFVFRVEKEEERNDWISILLNA   90 (102)
T ss_dssp             CCSSCCCEEETTTEEEEEEE----------TTTEEEEEESS-CCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CcceeEEEEEchhceeeccc----------cceeEEEEcCC-cEEEEEeCCHHHHHHHHHHHHHH
Confidence            56778999988754333322          24599999986 57999999999999999999654

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=9e-05  Score=51.18  Aligned_cols=34  Identities=32%  Similarity=0.629  Sum_probs=27.9

Q ss_pred             cceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus        34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+||-|-|| .+.|||||||+...+.|+..|+.|
T Consensus        85 ~~~~~~~~~~-~r~~~l~Aes~~e~~~Wi~aL~~A  118 (126)
T d1v5pa_          85 TPFCFVINAL-SQRYFLQANDQKDLKDWVEALNQA  118 (126)
T ss_dssp             CSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             ccceEEEcCC-CeeEEEECCCHHHHHHHHHHHHHH
Confidence            3467777776 478999999999999999999643

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=6.5e-05  Score=50.48  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=34.2

Q ss_pred             ceeEEeeeccc---cceeeeecChhHHHHHHHHHHHHHHHHHHHH
Q 041344           35 GCCFYIGTPQK---KDYFLCAETPGAARAWVSTLHAAQLVLKAHK   76 (236)
Q Consensus        35 gCCfyIgtpqk---K~yfLcAETp~aaraWvstl~AtqlVlkAHK   76 (236)
                      ..||.|.+++.   .+|+|||+|+.....|+..|+.+...++...
T Consensus        71 ~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~~~~  115 (118)
T d1unqa_          71 PNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQE  115 (118)
T ss_dssp             TTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhhccc
Confidence            35899988765   4589999999999999999988876666543

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00028  Score=47.04  Aligned_cols=55  Identities=15%  Similarity=0.247  Sum_probs=38.6

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      +..+.|+|.+..-  ..+.|.+-   ++ ..+||-|.||. +.|+|||||+.....|+.-|+
T Consensus        46 ~~~~~~~i~l~~~--~~~~~~~~---~~-~~~~f~i~t~~-r~~~l~A~s~~e~~~Wi~al~  100 (103)
T d1qqga1          46 SSAPKRSIPLESC--FNINKRAD---SK-NKHLVALYTRD-EHFAIAADSEAEQDSWYQALL  100 (103)
T ss_dssp             CSCCSEEEEGGGE--EEEEEECC---SS-CSSEEEEEESS-CEEEEECSSHHHHHHHHHHHH
T ss_pred             cccccceEeccee--eEEeeccc---CC-CceEEEEEeCC-eEEEEEcCCHHHHHHHHHHHH
Confidence            3456788766432  22333332   22 34899999975 679999999999999998875

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00018  Score=48.88  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=39.4

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~A   67 (236)
                      ..+..+.|.|.++. ++|..+|-      +-...||.|-+|.. +.|+|||||......|+..|+-
T Consensus        41 ~~~~~~~~~i~l~~-~~v~~~~~------~~~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~   99 (101)
T d2elba2          41 RGDVAGGLAMDIDN-CSVMAVDC------EDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINN   99 (101)
T ss_dssp             TTCCCE----EEEE-CCCCCCCC------CCSSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHH
T ss_pred             cCCcccceEEEecc-cccccccc------cCCcceEEEEeecccceEEEECCCHHHHHHHHHHHHh
Confidence            35667788888863 44544432      22346899999875 5799999999999999988863

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00075  Score=45.38  Aligned_cols=62  Identities=16%  Similarity=0.206  Sum_probs=46.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-------cceeeeecChhHHHHHHHHHHHH
Q 041344            3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-------KDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-------K~yfLcAETp~aaraWvstl~At   68 (236)
                      ..+..++|.|.++..+.+.+.+....+.+    .||=|-++..       +.|+|||+++.....|+..|+.+
T Consensus        42 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a  110 (118)
T d1v89a_          42 EEDTKPQGCMYLPGCTIKEIATNPEEAGK----FVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV  110 (118)
T ss_dssp             SSCCSCSEEECSTTEEEEEECCCSSCCCC----CEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcccccceeccCceEEEEeccccccCCC----cEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            45677899999998776666554433322    3788877764       45999999999999999999765

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00074  Score=47.28  Aligned_cols=55  Identities=22%  Similarity=0.319  Sum_probs=37.9

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+.|.|.++. ++|.+.|-. .   + -..||.|-||.+ +|+|||||+..+..|+..|+.+
T Consensus        53 ~~~~~i~L~~-~~v~~~~~~-~---~-r~~~F~i~~~~~-~~~f~A~s~~e~~~Wi~ai~~a  107 (133)
T d2j59m1          53 EEEQPISVNA-CLIDISYSE-T---K-RKNVFRLTTSDC-ECLFQAEDRDDMLAWIKTIQES  107 (133)
T ss_dssp             ----CEECSS-CEEEECSSS-C---S-CSSEEEEECSSC-EEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccceecc-eEEEEcccc-c---c-cCceeEEecCCC-EEEEEeCCHHHHHHHHHHHHHH
Confidence            4667777764 456554421 1   1 237999999885 7999999999999999999654

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.0012  Score=44.16  Aligned_cols=59  Identities=7%  Similarity=0.121  Sum_probs=44.1

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+..+++.|.+...+.+.+.      .......||-|-++..+.|+|||+|+..++.|+..|+.+
T Consensus        43 ~~~~~~~~i~l~~~~~~~~~------~~~~~~~~F~i~~~~~~~~~f~a~s~~~~~~Wi~ai~~a  101 (109)
T d1wgqa_          43 EDVAALESQPLLGFTVTLVK------DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             TCSSCSEEEECSSEEEEECC------CSSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccccccccceeeeeecc------cccccceeeeeecccceEEEEECCCHHHHHHHHHHHHHH
Confidence            34567788877554322222      233456899999998889999999999999999999765

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00094  Score=45.85  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-------cceeeeecChhHHHHHHHHHHH
Q 041344            5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-------KDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-------K~yfLcAETp~aaraWvstl~A   67 (236)
                      +..++|.|.++.. +|...+.+-.|-    --||-|-+|..       +.|+|||||+.....|++.|+-
T Consensus        41 ~~~~~~~i~l~~~-~v~~~~~~~~~~----~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~  105 (111)
T d2dyna_          41 EKEKKYMLSVDNL-KLRDVEKGFMSS----KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLR  105 (111)
T ss_dssp             CCCEEEEEECTTE-EEEEECCCSTTC----SEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHH
T ss_pred             hcccccccccccc-eeEeeccccccc----cccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHH
Confidence            5678899998754 343333333222    24999988753       6799999999999999999854

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.001  Score=47.65  Aligned_cols=59  Identities=8%  Similarity=0.143  Sum_probs=40.4

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      +|..+.|.|.+-....++..     ...+-..+||.|-||.+ .|+|||||+.....|+..|+.+
T Consensus        46 ~d~~~~~~i~L~~~~~~~~~-----~~~~~~~~~F~i~~~~~-~~~f~Aes~~e~~~Wi~~I~~v  104 (136)
T d1x1fa1          46 KSIIYVDKLDIVDLTCLTEQ-----NSTEKNCAKFTLVLPKE-EVQLKTENTESGEEWRGFILTV  104 (136)
T ss_dssp             SCSSCSEECCCSSCCEEEEC-----CCTTSCCCEEEEECSSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccceeeeeee-----cccccccceeeecCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence            45566777655433333221     11222358999999864 5999999999999999998754

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00097  Score=45.70  Aligned_cols=58  Identities=24%  Similarity=0.442  Sum_probs=37.0

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeec----------------------cccc-eeeeecChhHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTP----------------------QKKD-YFLCAETPGAARA   60 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtp----------------------qkK~-yfLcAETp~aara   60 (236)
                      .+..++|.|.++.. +|...|.+-      ++=||-|.+|                      .... |+|||||+...+.
T Consensus        42 ~~~~~~g~i~L~~~-~v~~~~~~~------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~  114 (130)
T d1v88a_          42 KNGQWVGTVLLNAC-EIIERPSKK------DGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRC  114 (130)
T ss_dssp             SSCCCCEEEECSSC-EECCCCTTT------SSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHH
T ss_pred             CCCcceeEEECCCe-EEEEccccC------CCceEEEEcCCCcceecccCcccccceeEEecCCcEEEEEECCCHHHHHH
Confidence            45678999999854 344333321      1224444333                      2233 5689999999999


Q ss_pred             HHHHHHHH
Q 041344           61 WVSTLHAA   68 (236)
Q Consensus        61 Wvstl~At   68 (236)
                      |+..|+.+
T Consensus       115 Wi~al~~~  122 (130)
T d1v88a_         115 WMDALELA  122 (130)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988654

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.76  E-value=0.0013  Score=46.00  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=43.6

Q ss_pred             CCcceeEEeecCceeeeecc-----ccCCCCCccceeEEeee-ccccceeeeecChhHHHHHHHHHHH
Q 041344            6 PTVKGTITFDENSTIAISPV-----NFHGLPKYDGCCFYIGT-PQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus         6 ~~~kG~I~fDa~STitiSPv-----Nf~g~~kYDgCCfyIgt-pqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      .+.+|.|-+++=..|..-..     ++ +.+....|||-|.- ...|.++|+|+|+..++.||..|++
T Consensus        50 ~~~~~~i~i~~I~~V~~G~~s~~~~~~-~~~~~~~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~  116 (119)
T d1maia_          50 SPESQLFSIEDIQEVRMGHRTEGLEKF-ARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRK  116 (119)
T ss_dssp             CTTTTEEEGGGEEEEEESSCSHHHHHH-CTTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHH
T ss_pred             CccceEEEHHHceEEEcCCCCchhhhc-ccCCCcCceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            34577877776555554221     22 33456689999973 4458899999999999999999975

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.0018  Score=43.64  Aligned_cols=64  Identities=14%  Similarity=0.208  Sum_probs=39.8

Q ss_pred             CCCCcceeEEeecCceeeeeccc---------------cCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVN---------------FHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvN---------------f~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At   68 (236)
                      .+..++|.|.++..+-+.+.+.+               .....+-..|+| +..+..+.|+|||||......|+..|+.+
T Consensus        40 ~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~  118 (127)
T d1fgya_          40 TDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGR-VVEGNHVVYRISAPSPEEKEEWMKSIKAS  118 (127)
T ss_dssp             TCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSC-EEECCCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCccccceEeCCCeEEEEccCCCCCceEEEecccccccccccccccccee-EeeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence            46678999988865433332211               111122222332 33334456999999999999999999876

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0039  Score=47.02  Aligned_cols=51  Identities=22%  Similarity=0.499  Sum_probs=39.3

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344            4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus         4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      .+..++|.|.+.....+..          .+++||-|-||. +.|+|||+ .+-+..||..|.
T Consensus        81 ~~~~~kG~I~L~~~~~v~~----------~~~~~F~I~t~~-Rty~l~a~-~~d~~~Wv~aI~  131 (147)
T d1w1ha_          81 VNKVLKGEIPWSQELRPEA----------KNFKTFFVHTPN-RTYYLMDP-SGNAHKWCRKIQ  131 (147)
T ss_dssp             TTTEEEEEECCCTTCEEEE----------EETTEEEEECSS-CEEEEECT-TSCHHHHHHHHH
T ss_pred             CcccccceEEecccccccc----------ccCceEEEecCc-eEEEEEcC-hHHHHHHHHHHH
Confidence            4567899999987665543          345799999986 57999985 567899999885

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.59  E-value=0.022  Score=40.64  Aligned_cols=35  Identities=14%  Similarity=0.326  Sum_probs=31.4

Q ss_pred             CccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344           32 KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (236)
Q Consensus        32 kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~   66 (236)
                      ...-+||-|..|.++.|+|+|.|+..-+.|+..|.
T Consensus        88 ~~~~~~f~i~~~~~~~~~l~a~s~eek~~Wv~~L~  122 (132)
T d1v61a_          88 EGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLN  122 (132)
T ss_dssp             SSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHH
T ss_pred             cCccceEEEeCCCCCEEEEEcCCHHHHHHHHHHHH
Confidence            34558999999988889999999999999999986

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.66  E-value=0.099  Score=35.41  Aligned_cols=34  Identities=18%  Similarity=0.245  Sum_probs=29.3

Q ss_pred             eeEEeeeccccceeeeecChhHHHHHHHHHHHHHH
Q 041344           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (236)
Q Consensus        36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~Atql   70 (236)
                      -||.|.+|. +.|.|+|+||..-..|+..|+-|.-
T Consensus        70 n~f~i~~~~-~~~~~~a~s~~eK~~W~~~l~~a~~  103 (109)
T d1zc3b1          70 DMFKLLMFP-ESRIFQAENAKIKREWLEVLEETKR  103 (109)
T ss_dssp             SEEEEEETT-EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEccCC-CEEEEEECCHHHHHHHHHHHHHHHH
Confidence            579999887 5699999999999999999976543

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.22  Score=34.17  Aligned_cols=52  Identities=17%  Similarity=0.284  Sum_probs=38.6

Q ss_pred             ceeeeeccccCCCCCccceeEEeee---c-cccceeeeecChhHHHHHHHHHHHHH
Q 041344           18 STIAISPVNFHGLPKYDGCCFYIGT---P-QKKDYFLCAETPGAARAWVSTLHAAQ   69 (236)
Q Consensus        18 STitiSPvNf~g~~kYDgCCfyIgt---p-qkK~yfLcAETp~aaraWvstl~Atq   69 (236)
                      ..+.++-+++.-.++-+.++|-|-.   + ..+.|-|+|+||..=+.|+..|+-+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i  117 (121)
T d1ntya2          62 SKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVI  117 (121)
T ss_dssp             EEEEGGGEEEECCCTTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eeEEecceEEEEcCCCCCceEEEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence            3456666666666777889998842   1 23458899999999999999997553

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.3  Score=33.98  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=27.5

Q ss_pred             eEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344           37 CFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (236)
Q Consensus        37 CfyIgtpqkK~yfLcAETp~aaraWvstl~A   67 (236)
                      ||.|-++.++.|.|+|+|+..-+.|+..|..
T Consensus        96 ~f~i~~~~~~~~~l~a~s~~eK~~W~~~l~~  126 (133)
T d1dbha2          96 AFEIILKDENSVIFSAKSAEEKNNWMAALIS  126 (133)
T ss_dssp             EEEECCTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred             ceeEEcCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            5888887777899999999999999999964

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.63  E-value=0.49  Score=33.28  Aligned_cols=40  Identities=33%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             CCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHH
Q 041344           30 LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (236)
Q Consensus        30 ~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atql   70 (236)
                      .+.+....|++..|. +.|.|+|+|+..-..|+..|..|+.
T Consensus        93 d~~~~~~~~~~~~~~-~~~~l~a~s~~ek~~W~~~I~~Ai~  132 (142)
T d1ki1b2          93 DPSGDEPIFHISHID-RVYTLRAESINERTAWVQKIKAASE  132 (142)
T ss_dssp             SSCCC---CEEEETT-EEEECBCSSHHHHHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCC-EEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            345666788888765 4699999999999999999966553

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.66  E-value=1  Score=32.27  Aligned_cols=34  Identities=9%  Similarity=0.231  Sum_probs=28.0

Q ss_pred             eEEeeeccc-cceeeeecChhHHHHHHHHHHHHHH
Q 041344           37 CFYIGTPQK-KDYFLCAETPGAARAWVSTLHAAQL   70 (236)
Q Consensus        37 CfyIgtpqk-K~yfLcAETp~aaraWvstl~Atql   70 (236)
                      ||.|-.+.. +-|.|+|+||.-=+.|+..|+-+.-
T Consensus        99 ~f~i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~~  133 (162)
T d2dfka2          99 AFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERK  133 (162)
T ss_dssp             EEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            788875543 5599999999999999999987643