Citrus Sinensis ID: 041418

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
Protein Sequence
KVLTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMSL
Secondary Structure (PSIPRED)
cHHHHcHHHHHccccccccccHHHHHHcccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEcccccEEcEEEcccHHHHHHHHHHHHcccEEEccccccccccccEEEEEcccccccccccccHHHHccccccEEccccccccccccEEEEccccccccccHHccccccccEEEccccccccccHHHHccccccEEEcccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccHHccccccHHHEEEEEcccccccEcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEEccccccEEEEEHHHHHHHHHHHHHHHccEEEEEcccccccccccEEEEEEEcccccccccccEEEEEEccccHHcHHHHHHHHHHHHEcccccccccccHHHHHHHHHccEEcccccccHHccHHHHHHHHHHEEEEccccccccccccHHHHHHHHHHHHHHHcHHHHccEEEEccccccHHHHHHHHHHHHHccEEEEEccccccHHHHHHcccccHHHHHcccHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
kvltmslgLQCIiycmspfclkpcflyfsvfpahleisTRHVYQLWIAegfiednnEATAKKYLEQLINRGFVeankrraggtintcsipgrcrpvllgvaskvefifspfmdieddydsqlhsflccspesrhidpidwEKICGMfkllrypsgieNLFLLRYLKLNIPSLKSLSSSLLSNLLnlytldmpfsyidHTVDEFWKMKKLRHLNFGLSCLKSLKLaneskmpwlSKIVLAEYlfphslthlsfsntdrmddpmpvletlpllqkadfwtmgnaampklecliinpcaylkkmpeHLWCIKSlnkfdcwwpqpelRQKLREFEdkeqqipnrqstgemmsl
Flexible Loop (DISEMBL)
KVLTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGfveankrraggtintcsipgrcRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRefedkeqqipnrqstgemmsl
Low Complexity Region (SEG)
KVLTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYlklnipslkslsssllsnllnlYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMSL
Disordered region (IsUnstruct)
***TMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ*****************************
Disordered Region (DISOPRED)
***TMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFS*****************CC*P***HIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMSL
Disordered Region (DISEMBL)
KVLTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFED*****************
Disordered Region (DISPRO)
KVLTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQI************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KVLTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	349	2.2.26 [Sep-21-2011]
Q9M667	835	Disease resistance protei	yes	no	0.859	0.359	0.257	2e-11
Q9STE7	847	Putative disease resistan	no	no	0.300	0.123	0.330	7e-10
Q9STE5	847	Putative disease resistan	no	no	0.532	0.219	0.282	2e-09
Q9SX38	857	Putative disease resistan	no	no	0.899	0.366	0.226	8e-09
Q8W3K3	910	Putative disease resistan	no	no	0.919	0.352	0.231	4e-08
Q39214	926	Disease resistance protei	no	no	0.553	0.208	0.252	1e-07
Q8W474	907	Probable disease resistan	no	no	0.793	0.305	0.252	3e-07
Q9C646	899	Probable disease resistan	no	no	0.555	0.215	0.258	1e-06
Q6L406	1326	Putative late blight resi	N/A	no	0.246	0.064	0.368	2e-06
Q6L3Z4	1348	Putative late blight resi	N/A	no	0.217	0.056	0.370	3e-06

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 168/407 (41%), Gaps = 107/407 (26%)

Query: 22  KPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEA----TAKKYLEQLINRGFVEANK 77
           K CFLY S+FP   EI    +  L +AEGFI+ + E      A+ Y+E+LI+R  +EA  
Sbjct: 418 KLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEA-V 476

Query: 78  RRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCC--------- 128
           RR  G + +C I    R V +  + ++ F+     ++ +D+ +Q HS   C         
Sbjct: 477 RRERGKVMSCRIHDLLRDVAIKKSKELNFV-----NVYNDHVAQ-HSSTTCRREVVHHQF 530

Query: 129 ---SPESR---------------HIDPIDWEKICGMFKLLRY--------PSGIE-NLFL 161
              S E R               H+  +D+E +    KLLR         P  I  +L  
Sbjct: 531 KRYSSEKRKNKRMRSFLYFGEFDHLVGLDFETL----KLLRVLDFGSLWLPFKINGDLIH 586

Query: 162 LRYLKLNIPSLKSLS-SSLLSNLLNLYTLDMPFSY-IDHTVDEFWKMKKLRHL--NF--- 214
           LRYL ++  S+     ++++S L  L TL +  +Y I+ T+D   K+  LRH+  NF   
Sbjct: 587 LRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETID-LRKLTSLRHVIGNFFGG 645

Query: 215 -------GLSCLKSLKLANESKMP----------WLSKIVLAEYLFPH----SLTHLSFS 253
                   L  L S+   + +K+            +S++  ++    H    SLT L   
Sbjct: 646 LLIGDVANLQTLTSISFDSWNKLKPELLINLRDLGISEMSRSKERRVHVSWASLTKLESL 705

Query: 254 NTDRMDDPMPV---LETLPLLQKADFWTMGNAA------------------MPKLECLII 292
              ++  P  V   LE+   ++  D  +    +                  MP+LE LI+
Sbjct: 706 RVLKLATPTEVHLSLESEEAVRSMDVISRSLESVTLVGITFEEDPMPFLQKMPRLEDLIL 765

Query: 293 NPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPN 339
             C Y  KM         L K D       L + L E + +E+ +PN
Sbjct: 766 LSCNYSGKMSVSEQGFGRLRKLDL------LMRSLDELQIEEEAMPN 806

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 13/118 (11%)

Query: 21  LKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEA----TAKKYLEQLINRGFVEAN 76
           LK CFLYFSVFP   EI    +  L +AEGFI+++ E      A+ Y+++L++R  V+A 
Sbjct: 417 LKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVARCYIDELVDRSLVKA- 475

Query: 77  KRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRH 134
           +R   G + +C I    R + +  A ++ F+        + Y+ + HS   C  E  H
Sbjct: 476 ERIERGKVMSCRIHDLLRDLAIKKAKELNFV--------NVYNEKQHSSDICRREVVH 525

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE5|R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 96/237 (40%), Gaps = 51/237 (21%)

Query: 21  LKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEAT----AKKYLEQLINRGFVEAN 76
           LK CFLY SVFP   E+    + QL +AEGFI+++ E T    A+ Y+E L+    VE  
Sbjct: 410 LKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVV 469

Query: 77  KRRAGGTINTCSIPGRCRPVLLGVASKVEF----------------IFSPFMDIEDDY-- 118
           KR+ G  + +  I    R   +  + ++ F                +    MD  D+Y  
Sbjct: 470 KRKKGKLM-SFRIHDLVREFTIKKSKELNFVNVYDEQHSSTTSRREVVHHLMD--DNYLC 526

Query: 119 ----DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRY------------------PSGI 156
               ++Q+ SFL        I  +  E I    KLLR                   P  I
Sbjct: 527 DRRVNTQMRSFLFFGKRRNDITYV--ETITLKLKLLRVLNLGGLHFICQGYSPWSLPDVI 584

Query: 157 ENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN 213
             L  LRYL +    + +L    +SNL  L TLD   +  +   D    +  LRHL 
Sbjct: 585 GGLVHLRYLGIADTVVNNL-PDFISNLRFLQTLDASGNSFERMTD-LSNLTSLRHLT 639

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 61.6 bits (148), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 155/428 (36%), Gaps = 114/428 (26%)

Query: 11  CIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFI--------EDNNEATAKK 62
           C+ Y   P  +K CFLYF+ +P   E+    +    IAEG +            E   + 
Sbjct: 415 CLSYEYLPPHVKQCFLYFAHYPEDYEVHVGTLVSYCIAEGMVMPVKHTEAGTTVEDVGQD 474

Query: 63  YLEQLINRGFVEANKRR-AGGTINTCSIPGRCRPVLLGVASKVEFI----------FSPF 111
           YLE+L+ R  V   +R      + TC +    R V L  A +  F+             F
Sbjct: 475 YLEELVKRSMVMVGRRDIVTSEVMTCRMHDLMREVCLQKAKQESFVQVIDSRDQDEAEAF 534

Query: 112 MDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRY-------------PSGIEN 158
           + +  +   ++   L    E  HI  +       M KLLR              P  + +
Sbjct: 535 ISLSTNTSRRISVQLHGGAEEHHIKSLSQVSFRKM-KLLRVLDLEGAQIEGGKLPDDVGD 593

Query: 159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFW-------------K 205
           L  LR L + + ++K L+SS + NL  + TLD+      +  ++ W              
Sbjct: 594 LIHLRNLSVRLTNVKELTSS-IGNLKLMITLDLFVKGQLYIPNQLWDFPVGKCNPRDLLA 652

Query: 206 MKKLRHLNFGLS--------------CLKSLK-----LANESKMP--WLSKIVLA----- 239
           M  LR L+  LS               LK L+     +  E  +P   ++++V A     
Sbjct: 653 MTSLRRLSINLSSQNTDFVVVSSLSKVLKRLRGLTINVPCEPMLPPVDVTQLVSAFTNLC 712

Query: 240 -------------EYLFPHSLTHLSFSNTDRMDDPMPVLETLP----------------- 269
                        E  F   L  L       +DDP  VLE LP                 
Sbjct: 713 ELELFLKLEKLPGEQSFSSDLGALRLWQCGLVDDPFMVLEKLPNLKILQLFEGSFVGSKL 772

Query: 270 ----LLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQ 325
                L+  + WT+ + AM +L  + +  C  LK +PE    +K+L +        E+  
Sbjct: 773 CCSKNLENLEEWTVEDGAMMRLVTVELKCCNKLKSVPEGTRFLKNLQEV-------EIGN 825

Query: 326 KLREFEDK 333
           + + F+DK
Sbjct: 826 RTKAFKDK 833

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 158/483 (32%), Gaps = 162/483 (33%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN------EATAKKYLEQLINRG 71
           P  LK CFLY + FP    I    +   W AEG +E  +          + Y+E+L+ R 
Sbjct: 421 PSYLKHCFLYLAHFPEDHNIKVEKLSYCWAAEGILEPRHYHGQTIRDVGESYIEELVRRN 480

Query: 72  FVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFM---DIEDDYDSQLHSFLCC 128
            V A +         C +    R V L  A +  F+    +        Y      F+  
Sbjct: 481 MVIAERDVTTLRFEACHLHDMMREVCLLKAKEENFVQIASILPPTANSQYPGTSRRFVSQ 540

Query: 129 SPESRHIDP-----------IDWE------KICG----MFKLLRY-------------PS 154
           +P + H+             I WE      K+ G      +LLR              PS
Sbjct: 541 NPTTLHVSRDINNPKLQSLLIVWENRRKSWKLLGSSFIRLELLRVLDLYKAKFEGRNLPS 600

Query: 155 GIENLFLLRYLKLNIPSLKSLSSSL----------------------------------- 179
           GI  L  LRYL L++  +  L SSL                                   
Sbjct: 601 GIGKLIHLRYLNLDLARVSRLPSSLGNLRLLIYLDINVCTKSLFVPNCLMGMHELRYLRL 660

Query: 180 -----------LSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGL-----------S 217
                      L NL+NL TL+  FS  + ++++   M  LR L  GL           S
Sbjct: 661 PFNTSKEIKLGLCNLVNLETLE-NFSTENSSLEDLRGMVSLRTLTIGLFKHISKETLFAS 719

Query: 218 CLKSLKLANES----------KMPWLSKIVLA------------------EYLFPHSLTH 249
            L    L N S          K      IVL                   E  FP  LT 
Sbjct: 720 ILGMRHLENLSIRTPDGSSKFKRIMEDGIVLDAIHLKQLNLRLYMPKLPDEQHFPSHLTS 779

Query: 250 LSFSNTDRMDDPMPVLETLPLLQKA--DF------------------------------- 276
           +S      ++DP+P+LE L  L++   DF                               
Sbjct: 780 ISLDGCCLVEDPLPILEKLLELKEVRLDFRAFCGKRMVSSDGGFPQLHRLYIWGLAEWEE 839

Query: 277 WTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQ 336
           W +   +MP+L  L I  C  LK++P+ L  I S+   D      E+  +  E   K Q 
Sbjct: 840 WIVEEGSMPRLHTLTIWNCQKLKQLPDGLRFIYSIKDLDMDKKWKEILSEGGEEYYKVQH 899

Query: 337 IPN 339
           IP+
Sbjct: 900 IPS 902

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 94/230 (40%), Gaps = 37/230 (16%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIED----NNEATAKKYLEQLINRGFV 73
           P+ LK CFLY S+FP +  +  + + ++W+A+ F+E       E  A  YL +L+ R  +
Sbjct: 428 PYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNML 487

Query: 74  EANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYD-------------- 119
           +       G      +      + L V SK+E     + D  D  D              
Sbjct: 488 QVILWNPFGRPKAFKMHDVIWEIALSV-SKLERFCDVYNDDSDGDDAAETMENYGSRHLC 546

Query: 120 ------------SQLHSFLCCSPESRHIDPIDWEKICGMFKL-----LRYPSGIENLFLL 162
                       + LHS L CS     ++ +    +     L      + P  +  +F L
Sbjct: 547 IQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNL 606

Query: 163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHL 212
           +YL L+   +K L  +    L+NL TL+   S I+      WK+KKLR+L
Sbjct: 607 KYLNLSKTQVKELPKN-FHKLVNLETLNTKHSKIEELPLGMWKLKKLRYL 655

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W474|DRL7_ARATH Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=4

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 127/337 (37%), Gaps = 60/337 (17%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGF--IED--NNEA---TAKKYLEQLINR 70
           P  LK CFLY + FP   +I+   +   W AEG    ED  N E      + YLE+L+ R
Sbjct: 417 PSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLEELVRR 476

Query: 71  GFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCS- 129
             +   +        TC +    R V L  A +  F+      +     S  +S   C  
Sbjct: 477 NMIIWERDATASRFGTCHLHDMMREVCLFKAKEENFLQIAVKSVGVTSSSTGNSQSPCRS 536

Query: 130 -------PESRHIDP-----------IDWE-------KICGM-----------------F 147
                  P + H++            + W        K+ G                  F
Sbjct: 537 RRLVYQCPTTLHVERDINNPKLRSLVVLWHDLWVENWKLLGTSFTRLKLLRVLDLFYVDF 596

Query: 148 KLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY-TLDMPFSYIDHTVDEFWKM 206
           + ++ P GI NL  LRYL L    +  L SSL + +L +Y  LD+   +I    D F +M
Sbjct: 597 EGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNLDVDTEFI-FVPDVFMRM 655

Query: 207 KKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLE 266
            +LR+L   L   K  +L+       L  +V  E L   S  H S  +   M   M +  
Sbjct: 656 HELRYLKLPLHMHKKTRLS-------LRNLVKLETLVYFSTWHSSSKDLCGMTRLMTLAI 708

Query: 267 TLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE 303
            L  +   +  +   + +  LE L I    + KKM E
Sbjct: 709 RLTRVTSTETLSASISGLRNLEYLYI-VGTHSKKMRE 744

Possible disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C646|RX24L_ARATH Probable disease resistance protein RXW24L OS=Arabidopsis thaliana GN=RXW24L PE=2 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 94/244 (38%), Gaps = 50/244 (20%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIE------DNNEATAKKYLEQLINRG 71
           P  LK CFLY + FP   EI    ++  W AEG  E      +    T   Y+E+L+ R 
Sbjct: 416 PNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYDGETIRDTGDSYIEELVRRN 475

Query: 72  FVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFI-----FSPFMDIEDDYDSQLHSFL 126
            V + +        TC +    R + L  A +  F+      SP  + +    S+   F+
Sbjct: 476 MVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGASR--RFV 533

Query: 127 CCSPESRHI----------------DPIDWEK-------------------ICGMFKLLR 151
             +P + H+                D I   +                   +   FK  +
Sbjct: 534 LHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGK 593

Query: 152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTV-DEFWKMKKLR 210
            PS I  L  LRYL L    +  L SS L NL+ L  LD+   + D  V + F  M++LR
Sbjct: 594 LPSDIGKLIHLRYLSLKDAKVSHLPSS-LRNLVLLIYLDIRTDFTDIFVPNVFMGMRELR 652

Query: 211 HLNF 214
           +L  
Sbjct: 653 YLEL 656

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L406|R1B19_SOLDE Putative late blight resistance protein homolog R1B-19 OS=Solanum demissum GN=R1B-19 PE=5 SV=2

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 14  YCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN----EATAKKYLEQLIN 69
           Y + P  LK CFLYF+ F   + I    + +LWI+E FI+ +     E  A+ YLE LI 
Sbjct: 781 YHVLPCHLKSCFLYFAAFLEDVVIYISRLLRLWISEAFIKSSEGRSLEDIAEGYLENLIG 840

Query: 70  RGFVEANKRR-AGGTINTCSIPGRCRPVLLGVASK 103
           R  V   +R  + G + TC    R   VLL    K
Sbjct: 841 RNLVMVTQRADSDGKVKTC----RLHDVLLDFCKK 871

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L3Z4|R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 14  YCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN----EATAKKYLEQLIN 69
           Y + PF LK CFLYF  F     I+   + +LWI+E FI+       E  A+ YLE LI 
Sbjct: 806 YHVLPFHLKSCFLYFGAFLEDRVINVSRLIRLWISESFIKSCEGRRLEDIAEGYLENLIG 865

Query: 70  RGFVEANKR-RAGGTINTCSI 89
           R  V   +R  + G +  C +
Sbjct: 866 RNLVMVTQRANSDGKVKACRL 886

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
297734140	965	unnamed protein product [Vitis vinifera]	0.779	0.281	0.294	1e-23
296084159	607	unnamed protein product [Vitis vinifera]	0.773	0.444	0.303	1e-22
225455685	841	PREDICTED: probable disease resistance p	0.779	0.323	0.286	5e-20
359491404	922	PREDICTED: probable disease resistance R	0.570	0.215	0.321	5e-18
359496848	856	PREDICTED: disease resistance RPP8-like	0.555	0.226	0.313	2e-17
147766035	902	hypothetical protein VITISV_038742 [Viti	0.555	0.215	0.313	3e-17
356567194	750	PREDICTED: disease resistance protein RP	0.882	0.410	0.244	5e-17
297736615	1424	unnamed protein product [Vitis vinifera]	0.871	0.213	0.260	1e-15
297744337	591	unnamed protein product [Vitis vinifera]	0.647	0.382	0.301	1e-15
356567198	754	PREDICTED: putative disease resistance R	0.893	0.413	0.240	3e-15

>gi|297734140|emb|CBI15387.3| unnamed protein product [Vitis vinifera]

 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 148/357 (41%), Gaps = 85/357 (23%)

Query: 14  YCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN----EATAKKYLEQLIN 69
           Y   P+ LK CFLYF +FP   EIS R +  LW+AEGF++       E  A+ YLE+L+ 
Sbjct: 242 YSDLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVG 301

Query: 70  RGFVEANKRRAGGTINTCSIP----GRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSF 125
           R  ++   R++ G I TC         C P    +    +F     +D+E  Y S+LH  
Sbjct: 302 RSMIQVATRKSNGRIKTCFRSLLCFDICEPSFQELR---KFKLLRILDLEGVYISRLH-- 356

Query: 126 LCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLN 185
                                       S I NL  LRYL L    LK L  S +  LLN
Sbjct: 357 ----------------------------SSIGNLIHLRYLGLRGTWLKKLPPS-IQFLLN 387

Query: 186 LYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPH 245
           L TLD+  + ++      WKM+KLRHL F  + L+ + L           +  AEY FP 
Sbjct: 388 LQTLDLRSTLLNPIPIVIWKMQKLRHLYF--NELEEMALHTRD-------LFDAEY-FPQ 437

Query: 246 SLTHLSFSNTDRMDDPMPVLE---------------------------------TLPLLQ 272
           +LT LS   +  M+DPM  LE                                  L  L 
Sbjct: 438 NLTELSLKGSFLMEDPMVKLEMLQSLRVLKLKHSAYLGKEMICSCGGFPQLHFLKLSFLN 497

Query: 273 KADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE 329
             + W + + AM +L  L I  C  LK +P  L  + +++K    +   E   K++E
Sbjct: 498 TVERWRIEDGAMGRLRQLEIIECKRLKIVPRGLQPVTTIHKLKLGYMPREFEMKVQE 554

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084159|emb|CBI24547.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/329 (30%), Positives = 151/329 (45%), Gaps = 59/329 (17%)

Query: 8   GLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFI----EDNNEATAKKY 63
           G+  + Y   P+ LK CFLY  +F    EI    ++Q+WIAEGF+    E+  E  A+ Y
Sbjct: 201 GILALSYNDLPYYLKSCFLYCGLFLEDSEIKVSKLFQMWIAEGFVQRRGEEKVEKVAEDY 260

Query: 64  LEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLH 123
           LE+LINR  +   KR++ G I +C I G  R + +  A   +F F  + +   DY S + 
Sbjct: 261 LEELINRSMIRVVKRKSNGGIKSCHIHGLLRDLAISEAKDSKF-FEVYENT--DYTSPIS 317

Query: 124 SFLCCSPESR----HIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSL 179
                 P  +    HI+ +D E +    K+   P  I  L  L+Y++L       L  S 
Sbjct: 318 VRRLTIPHKKEIVHHINMLDVE-LSTKLKIT-LPKEIGELIRLKYMRLRGGHGLRLPES- 374

Query: 180 LSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFG------------------------ 215
           +  L+NL TLD  F  I  +V   W++ +LRHL +G                        
Sbjct: 375 IGRLVNLQTLDCRFGKIPWSV---WRLHQLRHL-YGYYSTVLSRPMMSRCLTFNGDLSIH 430

Query: 216 -LSCLKSLKLA-------NESKMPWLSKIVLAE-------YLFPHSLTHLSFSNTDRMDD 260
            L+ L++LKLA          K+P L K+ + +        L+P +L  L+  N D  +D
Sbjct: 431 LLTNLQTLKLAPGPWLEDGLGKLPQLKKLRITDGRFKNSSELYPENLMKLTLQNCDLEED 490

Query: 261 PMPVLETLPLLQKADFWTMGNAAMPKLEC 289
           PM  L+ LP L+      MGN+   K+ C
Sbjct: 491 PMLTLKKLPNLRILKL--MGNSCGSKMVC 517

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455685|ref|XP_002265241.1| PREDICTED: probable disease resistance protein RXW24L [Vitis vinifera]

 Score =  104 bits (260), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 150/353 (42%), Gaps = 81/353 (22%)

Query: 8   GLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFI----EDNNEATAKKY 63
           G+  + Y   P+ LK CFLY  +F    EI    ++Q+WIAEGF+    E+  E  A+ Y
Sbjct: 409 GILALSYNDLPYYLKSCFLYCGLFLEDSEIKVSKLFQMWIAEGFVQRRGEEKVEKVAEDY 468

Query: 64  LEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLH 123
           LE+LINR  +   KR++ G I +C I G  R + +  A   +F F  + +   DY S + 
Sbjct: 469 LEELINRSMIRVVKRKSNGGIKSCHIHGLLRDLAISEAKDSKF-FEVYENT--DYTSPIS 525

Query: 124 SFLCCSPESR----HIDPIDWEKICGMF-----------KLLRY-------------PSG 155
                 P  +    HI+      + G             KLL               P  
Sbjct: 526 VRRLTIPHKKEIVHHINSSRLRSLIGFVGEDSLTSCLAPKLLTVLDVELSTKLKITLPKE 585

Query: 156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFG 215
           I  L  L+Y++L       L  S +  L+NL TLD  F  I  +V   W++ +LRHL +G
Sbjct: 586 IGELIRLKYMRLRGGHGLRLPES-IGRLVNLQTLDCRFGKIPWSV---WRLHQLRHL-YG 640

Query: 216 -------------------------LSCLKSLKLA-------NESKMPWLSKIVLAE--- 240
                                    L+ L++LKLA          K+P L K+ + +   
Sbjct: 641 YYSTVLSRPMMSRCLTFNGDLSIHLLTNLQTLKLAPGPWLEDGLGKLPQLKKLRITDGRF 700

Query: 241 ----YLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLEC 289
                L+P +L  L+  N D  +DPM  L+ LP L+      MGN+   K+ C
Sbjct: 701 KNSSELYPENLMKLTLQNCDLEEDPMLTLKKLPNLRILKL--MGNSCGSKMVC 751

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 106/230 (46%), Gaps = 31/230 (13%)

Query: 14  YCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN----EATAKKYLEQLIN 69
           Y   P+ LK CFLYF +FP   EIS R +  LW+AEGF++       E  A+ YLE+L+ 
Sbjct: 428 YSDLPYYLKSCFLYFGLFPEDYEISARRLILLWVAEGFVQPRGQEPLEDVAEDYLEELVG 487

Query: 70  RGFVEANKRRAGGTINTCSIPGRCRPVLLGVASK--------VEFIFSPFMDIE------ 115
           R  ++   R++ G I TC +      + +    +         EF  S    +       
Sbjct: 488 RSMIQVATRKSNGRIKTCCVHDLLHELSVSKGKEDQFLDIIHGEFTVSSLTRVRRLAIHL 547

Query: 116 -----DDYDSQLHSFLC---CSPESRHIDPIDWEKIC---GMFKLLRYPSGIENLFLLRY 164
                    S++ S LC   C P  + +      +I    G++ + R  S I NL  LRY
Sbjct: 548 GVPPTTKNTSKVRSLLCFDICEPSFQELRKFKLLRILDLEGVY-ISRLHSSIGNLIHLRY 606

Query: 165 LKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNF 214
           L L    LK L  S +  LLNL TLD+  + ++      WKM+KLRHL F
Sbjct: 607 LGLRGTWLKKLPPS-IQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYF 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 107/233 (45%), Gaps = 39/233 (16%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFI----EDNNEATAKKYLEQLINRGFV 73
           P+ LKPCFLYF +FP  LEI    +  LWIAEGF+    E++ E  A+ +LE+L++R  +
Sbjct: 378 PYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRSMI 437

Query: 74  EANKRRAGGTINTCSIPGRCRPVLLGVASK---VEFIFSPFMDIEDDYDSQ---LHSFLC 127
           +  ++R  G I  C I    R + +  A +   +E + S  +D      ++   +HS L 
Sbjct: 438 QVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSSLE 497

Query: 128 CSPESRHIDP-----------------IDWEKICGMFKLLRY-----------PSGIENL 159
              + RH +P                   W+ +    KLLR            P  I  L
Sbjct: 498 EYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHALPKEIREL 557

Query: 160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHL 212
             LRYL L    L+ L SS + N  NL TLD+  + +     + W M  LRHL
Sbjct: 558 VHLRYLGLRRTGLQRLPSS-IQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHL 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 107/233 (45%), Gaps = 39/233 (16%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFI----EDNNEATAKKYLEQLINRGFV 73
           P+ LKPCFLYF +FP  LEI    +  LWIAEGF+    E++ E  A+ +LE+L++R  +
Sbjct: 424 PYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEELVDRSMI 483

Query: 74  EANKRRAGGTINTCSIPGRCRPVLLGVASK---VEFIFSPFMDIEDDYDSQ---LHSFLC 127
           +  ++R  G I  C I    R + +  A +   +E + S  +D      ++   +HS L 
Sbjct: 484 QVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARRISVHSSLE 543

Query: 128 CSPESRHIDP-----------------IDWEKICGMFKLLRY-----------PSGIENL 159
              + RH +P                   W+ +    KLLR            P  I  L
Sbjct: 544 EYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHALPKEIREL 603

Query: 160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHL 212
             LRYL L    L+ L SS + N  NL TLD+  + +     + W M  LRHL
Sbjct: 604 VHLRYLGLRRTGLQRLPSS-VQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHL 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567194|ref|XP_003551806.1| PREDICTED: disease resistance protein RPP13-like [Glycine max]

 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 110/449 (24%), Positives = 162/449 (36%), Gaps = 141/449 (31%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN---------EATAKKYLEQLI 68
           P  LKPCFLYF ++P   EIS R + Q WIAEGFI+            E  A  YL++L+
Sbjct: 295 PGRLKPCFLYFGIYPEDYEISARQLIQYWIAEGFIQPQKTGIADTTELEDVADFYLDELV 354

Query: 69  NRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFI----FSPFMDIED-------- 116
           +R  V+  KRR+ G + TC I    R + L  +   +F+     S    + +        
Sbjct: 355 DRSLVQVAKRRSDGGVKTCRIHDLLRDLCLSESKYDKFLEVCTNSNIFTVSNTNPRRMSF 414

Query: 117 ----DYDSQLHSFLCCSPESRHIDPIDWEK----ICGMFKLLRY--------------PS 154
               D D    +F      S  I   D +     I   FKL R                 
Sbjct: 415 HWKPDSDVSETTFNKSCTRSMFIFGRDAKTYLVPILKNFKLARVLGCDMIQQVWSYSASR 474

Query: 155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNF 214
            ++ +  LRYL++ +  L     S    L NL TL + +S       + W +K+LRHL  
Sbjct: 475 DLKRMIHLRYLRIEVEHLPDCVCS----LWNLETLHVKYS--GTVSSKIWTLKRLRHLYL 528

Query: 215 ------------GLSCLKSLKLA-----------NESKMPWLSKIVLAEY---------- 241
                        +  L++L L+           N    P L K+ L  Y          
Sbjct: 529 MGNGKLPLPKANRMENLQTLVLSGDYPQQIIFLLNSGIFPRLRKLALRCYNSVEGPGMLP 588

Query: 242 ------------------------LFPHSLTHLSFSNTDRMDDPMPVLET---LPLLQ-- 272
                                    FP +LT ++  +     DP  +++T   LP LQ  
Sbjct: 589 SLQRLSNLHSLKVMRGCELLLDTNAFPSNLTKITLKDLHAFRDPQSLMKTLGRLPNLQIL 648

Query: 273 ---------------KADF---------------WTMGNAAMPKLECLIINPCAYLKKMP 302
                          + +F               W +   AMP+L  L+I  C  L ++P
Sbjct: 649 KVSFCMHNDIHLDIGRGEFPQLQVLHMTQINVRQWRLEKDAMPRLRHLLIEECYGLSELP 708

Query: 303 EHLWCIKSLNKFDCWWPQPELRQKLREFE 331
           E LW + +L      WP  EL   L+  E
Sbjct: 709 EELWSMTALRLVHVSWPSQELANSLKNVE 737

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736615|emb|CBI25486.3| unnamed protein product [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 165/396 (41%), Gaps = 92/396 (23%)

Query: 18   PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFI----EDNNEATAKKYLEQLINRGFV 73
            P+ LK CFLY   FP   EI T+ + ++W+AEG +    E+  E  A+ YL++LI R  +
Sbjct: 1008 PYQLKSCFLYLGHFPEDQEIHTKALIRMWVAEGIVSRVEEETPEDVAEGYLDELIGRCMI 1067

Query: 74   EANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESR 133
            +  +R + G + TC +    R + L  A +  F+    +   + + S + +    +   R
Sbjct: 1068 QVGRRGSNGRVQTCRLHDLMRDLCLSKAEEENFLEIVNLQQMETFSSSMPTTRTSNKVRR 1127

Query: 134  H-------IDPIDWEKICGMFKLLRY--------------PSGIENLFLLRYLKLNIPSL 172
            H       +   DW+     FKLLR               P  + NL  L+YL     SL
Sbjct: 1128 HEGANSYVLRNTDWKN----FKLLRVLSLERLPFKENNNIPEALGNLVHLKYLSSKRASL 1183

Query: 173  KSLSSSLLSNLLNLYTLDMPF---SYIDHTVDEF------WKMKKLRHLNF--------- 214
             S  SS + NL  + TLD+ F   +     ++ F       +MK LRHL           
Sbjct: 1184 PSFPSS-IRNLGCIQTLDLRFYSAADAGQPINRFGINKVIGRMKWLRHLYLPMYLEVDDS 1242

Query: 215  -----GLSCLKSLK-----------LANESKMPWL---------SKIVLAEYLF------ 243
                  LS L++LK           LA  +K+  L          ++ + ++L+      
Sbjct: 1243 KVQWDNLSNLETLKNFYGEHWEVQDLAQLTKLRKLKIRNAKSFKEQLSICQHLYKLFLGG 1302

Query: 244  -----------PHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLII 292
                       P +LT L+   +    DP+P+LE L  L       +  +AM  L+ L I
Sbjct: 1303 EISKLPGHHHLPPNLTKLTLWESHLRQDPIPILERLLNLTTLL--LVEKSAMRSLKFLGI 1360

Query: 293  NPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLR 328
              C+ L+ +PE L  I +L   D  +   E  Q+L+
Sbjct: 1361 RMCSSLEMVPEGLRYITTLQILDISYMPKEFIQRLQ 1396

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744337|emb|CBI37307.3| unnamed protein product [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 83/275 (30%), Positives = 124/275 (45%), Gaps = 49/275 (17%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN----EATAKKYLEQLINRGFV 73
           P+ LK CFLY ++FP    I    + +LWIAEGF++       E TA+++L +LI+R  V
Sbjct: 273 PYQLKSCFLYLAIFPKDYTIKCGILTRLWIAEGFVKAKRGVTLEDTAEEFLTELIHRSLV 332

Query: 74  EANKRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDD-YDSQL---------H 123
           + ++    G I  C I    R ++L  A   E  F   M  E   +D +          +
Sbjct: 333 QVSQVYIDGNIKRCHIHDLMREIILKKAE--ELSFCSVMAGEASCFDGRFRRLSIQNSSN 390

Query: 124 SFLCCSPESRHIDPI--------DWEKICGMFKLL-----------RYPSGIENLFLLRY 164
           + L  + +  HI  I          E +   FKLL           R P  + NLF LRY
Sbjct: 391 NVLDITSKKSHIRSIFLYNSEMFSLETLASKFKLLKVLDLGGAPLDRIPEDLGNLFHLRY 450

Query: 165 LKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRH-LNFGLSCLKSLK 223
           L L    +K L  S +  L NL TLD+ +S+++    E  +++KLR+ L F  S    L+
Sbjct: 451 LSLRKTKVKMLPRS-IGKLQNLQTLDLKYSFVEDLPVEINRLQKLRNILCFDFSYNADLR 509

Query: 224 LANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRM 258
           L    K+  L K+          +T LS  N  R+
Sbjct: 510 LG---KLRQLRKL---------GITKLSRGNGQRL 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567198|ref|XP_003551808.1| PREDICTED: putative disease resistance RPP13-like protein 3-like [Glycine max]

 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 165/453 (36%), Gaps = 141/453 (31%)

Query: 14  YCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN---------EATAKKYL 64
           Y   P  LKPCFLYF ++P   EIS R + Q WIAEGFI+            E  A  YL
Sbjct: 291 YNNLPGRLKPCFLYFGIYPEDYEISARQLIQYWIAEGFIQPQKTGIADTTELEDVADFYL 350

Query: 65  EQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFI----FSPFMDIED---- 116
           ++L++R  V+  KRR+ G +  C I    R + L  +   +F+     S    + D    
Sbjct: 351 DELVDRSLVQVAKRRSDGGVKKCRIHDILRDLCLSESKSDKFLEVCTNSNIDTVSDTNPR 410

Query: 117 --------DYDSQLHSFLCCSPESRHI----DPIDWEKICGMFKLLR------------- 151
                   D D   ++F      S  I    D +D + +   F+L R             
Sbjct: 411 RMSIHWKPDSDVSANTFNKSCTRSMFIFGSDDRMDLDPVLKNFELARVLGCDMIQRVWSH 470

Query: 152 -YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLR 210
                ++ +  LRYL++ +  L     S    L NL TL +  +Y      + W +K+LR
Sbjct: 471 TVSRDLKRMIHLRYLRIEVEHLPDCVCS----LWNLETLHV--TYETTVSSKIWTLKRLR 524

Query: 211 HLNFG--------------LSCLKSLKLA-----------NESKMPWLSKIVL------A 239
           HL                 +  L++L L+           N    P L K+ L      A
Sbjct: 525 HLYLSGEGKLPVVLPKTNRMENLQTLLLSGKYPQQIISLLNSGIFPRLGKLALRCPKTHA 584

Query: 240 EYLFPHSLTHLSF-------------SNTD--------------RMDDPMPVLETLPLLQ 272
           E     SL HL+              S+T+                 +P P+++TL  L 
Sbjct: 585 ESAMLSSLHHLNNLHSLKVIEDLELPSDTNAFPSNLIKITLILAAFSNPHPLMKTLGRLT 644

Query: 273 KADFWTM-----------GNAAMPKLECL-----------------------IINPCAYL 298
                 +           G+   P+L+ L                       +I+ C  L
Sbjct: 645 NLQILKLNSGIDDILLDIGSGEFPQLQLLHMRQIYVRQWRLEKDAMPRLRHLVIDNCYKL 704

Query: 299 KKMPEHLWCIKSLNKFDCWWPQPELRQKLREFE 331
            K+PE LW + +L      WP  EL   L++ E
Sbjct: 705 SKLPEELWSLTALRVVHVLWPLEELANSLKDVE 737

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	349
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.257	0.099	0.318	8.2e-10
TAIR|locus:2169523	901	AT5G35450 [Arabidopsis thalian	0.249	0.096	0.359	8.4e-10
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.300	0.123	0.330	9.4e-10
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.303	0.126	0.341	1.8e-09
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.257	0.099	0.329	1.3e-07
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.257	0.088	0.291	1.9e-07
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.257	0.088	0.291	1.9e-07
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.257	0.085	0.281	1.9e-07
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.257	0.085	0.281	1.9e-07
TAIR|locus:2197409	727	LOV1 "LOCUS ORCHESTRATING VICT	0.257	0.123	0.305	1.6e-06

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 8.2e-10, Sum P(4) = 8.2e-10
 Identities = 29/91 (31%), Positives = 45/91 (49%)

Query:    18 PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN-EATAKKYLEQLINRGFVEAN 76
             P  LK  FLY + FP   +I T+ ++  W AEG  + +  + + + YLE+L+ R  V A+
Sbjct:   420 PTHLKHRFLYLAHFPEDSKIYTQDLFNYWAAEGIYDGSTIQDSGEYYLEELVRRNLVIAD 479

Query:    77 KRRAGGTINTCSIPGRCRPVLLGVASKVEFI 107
              R      N C +    R V L  A +  F+
Sbjct:   480 NRYLSLEFNFCQMHDMMREVCLSKAKEENFL 510

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2169523 AT5G35450 [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 8.4e-10, Sum P(3) = 8.4e-10
 Identities = 32/89 (35%), Positives = 43/89 (48%)

Query:    18 PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEA-TAKKYLEQLINRGFVEAN 76
             P  LK CFLY + FP   +I TR +Y  W AEG  +      + + YLE+L+ R  V A 
Sbjct:   414 PTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIYDGLTILDSGEDYLEELVRRNLVIAE 473

Query:    77 KRRAGGTINTCSIPGRCRPVLLGVASKVE 105
             K      +  C +    R V +  A KVE
Sbjct:   474 KSNLSWRLKLCQMHDMMREVCISKA-KVE 501

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
 Identities = 39/118 (33%), Positives = 62/118 (52%)

Query:    21 LKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEA----TAKKYLEQLINRGFVEAN 76
             LK CFLYFSVFP   EI    +  L +AEGFI+++ E      A+ Y+++L++R  V+A 
Sbjct:   417 LKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVARCYIDELVDRSLVKA- 475

Query:    77 KRRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRH 134
             +R   G + +C I    R + +  A ++ F+        + Y+ + HS   C  E  H
Sbjct:   476 ERIERGKVMSCRIHDLLRDLAIKKAKELNFV--------NVYNEKQHSSDICRREVVH 525

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
 Identities = 40/117 (34%), Positives = 62/117 (52%)

Query:    22 KPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEA----TAKKYLEQLINRGFVEANK 77
             K CFLY S+FP   EI    +  L +AEGFI+ + E      A+ Y+E+LI+R  +EA  
Sbjct:   418 KLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEA-V 476

Query:    78 RRAGGTINTCSIPGRCRPVLLGVASKVEFIFSPFMDIEDDYDSQLHSFLCCSPESRH 134
             RR  G + +C I    R V +  + ++ F+     ++ +D+ +Q HS   C  E  H
Sbjct:   477 RRERGKVMSCRIHDLLRDVAIKKSKELNFV-----NVYNDHVAQ-HSSTTCRREVVH 527

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 30/91 (32%), Positives = 43/91 (47%)

Query:    18 PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN-EATAKKYLEQLINRGFVEAN 76
             P  LK CFL  + FP   EIST  ++  W AEG  + +  E + + YLE+L+ R  V A+
Sbjct:   420 PTHLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYDGSTIEDSGEYYLEELVRRNLVIAD 479

Query:    77 KRRAGGTINTCSIPGRCRPVLLGVASKVEFI 107
                       C +    R V L  A +  F+
Sbjct:   480 DNYLSWQSKYCQMHDMMREVCLSKAKEENFL 510

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 28/96 (29%), Positives = 42/96 (43%)

Query:    18 PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNE--ATAKK----YLEQLINRG 71
             P  LK CFLY + FP   EI   ++   W AEG  +  +    T +     Y+E+L+ R 
Sbjct:   421 PSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRRN 480

Query:    72 FVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFI 107
              V + +        TC +    R V L  A +  F+
Sbjct:   481 MVISERDVKTSRFETCHLHDMMREVCLLKAKEENFL 516

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 28/96 (29%), Positives = 42/96 (43%)

Query:    18 PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNE--ATAKK----YLEQLINRG 71
             P  LK CFLY + FP   EI   ++   W AEG  +  +    T +     Y+E+L+ R 
Sbjct:   421 PSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRRN 480

Query:    72 FVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFI 107
              V + +        TC +    R V L  A +  F+
Sbjct:   481 MVISERDVKTSRFETCHLHDMMREVCLLKAKEENFL 516

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 27/96 (28%), Positives = 42/96 (43%)

Query:    18 PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN------EATAKKYLEQLINRG 71
             P  LK CFLY + FP   EI+ +++   W AEG  +  +            Y+E+L+ R 
Sbjct:   421 PSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVRRN 480

Query:    72 FVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFI 107
              V + +        TC +    R V L  A +  F+
Sbjct:   481 MVISERDVKTSRFETCHLHDMMREVCLLKAKEENFL 516

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 27/96 (28%), Positives = 42/96 (43%)

Query:    18 PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN------EATAKKYLEQLINRG 71
             P  LK CFLY + FP   EI+ +++   W AEG  +  +            Y+E+L+ R 
Sbjct:   421 PSYLKHCFLYLAHFPDDYEINVKNLSYYWAAEGIFQPRHYDGEIIRDVGDVYIEELVRRN 480

Query:    72 FVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFI 107
              V + +        TC +    R V L  A +  F+
Sbjct:   481 MVISERDVKTSRFETCHLHDMMREVCLLKAKEENFL 516

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 29/95 (30%), Positives = 44/95 (46%)

Query:    18 PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATA-----KKYLEQLINRGF 72
             P CLK CFLY + FP + EI  + ++    AEG I  +++ T      + YLE+L  R  
Sbjct:   298 PMCLKHCFLYLAHFPEYYEIHVKRLFNYLAAEGIITSSDDGTTIQDKGEDYLEELARRNM 357

Query:    73 VEANKRRAGGTINTCSIPGRCRPVLLGVASKVEFI 107
             +  +K         C +    R V L  A +  F+
Sbjct:   358 ITIDKNYMFLRKKHCQMHDMMREVCLSKAKEENFL 392

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	349
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	2e-06

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 14  YCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNE 57
           Y   P  LK CFLY ++FP    I    + +LWIAEGF+  ++ 
Sbjct: 242 YDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGFVIPSDI 285

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	349
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.71
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.69
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.65
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.53
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.43
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.41
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.4
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.18
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.13
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.11
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.09
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.04
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.04
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.96
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.94
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.9
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.82
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.7
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.59
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.53
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.47
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.42
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.35
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.22
PLN03150	623	hypothetical protein; Provisional	98.21
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.1
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.08
PLN03150	623	hypothetical protein; Provisional	97.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.94
PRK15386	426	type III secretion protein GogB; Provisional	97.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.72
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.58
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.32
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.13
KOG4341	483	consensus F-box protein containing LRR [General fu	96.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.85
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.67
PRK15386	426	type III secretion protein GogB; Provisional	96.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.56
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.15
KOG4341	483	consensus F-box protein containing LRR [General fu	95.84
smart00370	26	LRR Leucine-rich repeats, outliers.	95.51
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.48
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.85
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.95
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.92
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.82
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.51
smart00370	26	LRR Leucine-rich repeats, outliers.	93.51
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.14
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.17
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.77

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-39  Score=329.09  Aligned_cols=217  Identities=28%  Similarity=0.357  Sum_probs=162.7

Q ss_pred             hHhhHHHHHhhhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCC-----CHHHHHHHHHHHHHhCCceeeee
Q 041418            3 LTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIED-----NNEATAKKYLEQLINRGFVEANK   77 (349)
Q Consensus         3 l~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~-----~~~~~~~~~~~~L~~~sll~~~~   77 (349)
                      .+.|+++|++|||+||+++|.||+|||+|||||+|++++||.+||||||+.+     ++++.|..|+.+||++|+++...
T Consensus       394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~  473 (889)
T KOG4658|consen  394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER  473 (889)
T ss_pred             hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence            5789999999999999999999999999999999999999999999999977     88999999999999999999877


Q ss_pred             cCCCCceeeEEeChhHHHHHHHhhc-----ccCcccc----cccCcCCCCCCCeeEEEeecCCCCCCCcchHHhhhccCc
Q 041418           78 RRAGGTINTCSIPGRCRPVLLGVAS-----KVEFIFS----PFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFK  148 (349)
Q Consensus        78 ~~~~~~~~~~~mHdli~dla~~i~~-----~~~~~~~----R~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~  148 (349)
                      ..  ++..+|+|||+|||||.++|+     +++....    +.+.+...++..+|..++.++.........-   .++++
T Consensus       474 ~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~---~~~L~  548 (889)
T KOG4658|consen  474 DE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE---NPKLR  548 (889)
T ss_pred             cc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCC---CCccc
Confidence            54  566899999999999999999     4432221    1234445556666666666655543211100   01121


Q ss_pred             ccc----------CC-cccCCCCCCCEEeecCC-CCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---
Q 041418          149 LLR----------YP-SGIENLFLLRYLKLNIP-SLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---  213 (349)
Q Consensus       149 ~L~----------lp-~~i~~l~~L~~L~l~~~-~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---  213 (349)
                      .|-          ++ +.|..|+.|++|||++| .+.++|++| ++|-+|++|+++++.++.+|.++++|.+|.+|+   
T Consensus       549 tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~  627 (889)
T KOG4658|consen  549 TLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV  627 (889)
T ss_pred             eEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence            111          22 22666778888888866 567788888 888888888888887778888888888777777   


Q ss_pred             -----------hCCCCCCeeecc
Q 041418          214 -----------FGLSCLKSLKLA  225 (349)
Q Consensus       214 -----------~~l~~L~~L~l~  225 (349)
                                 ..+.+|++|.+.
T Consensus       628 ~~~l~~~~~i~~~L~~Lr~L~l~  650 (889)
T KOG4658|consen  628 TGRLESIPGILLELQSLRVLRLP  650 (889)
T ss_pred             ccccccccchhhhcccccEEEee
Confidence                       226666666655

>PLN03210 Resistant to P

Probab=99.96  E-value=2e-29  Score=266.23  Aligned_cols=294  Identities=16%  Similarity=0.113  Sum_probs=182.5

Q ss_pred             HhhHHHHHhhhCCCCC-CchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCC
Q 041418            4 TMSLGLQCIIYCMSPF-CLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGG   82 (349)
Q Consensus         4 ~~i~~~L~lSY~~L~~-~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~   82 (349)
                      .+|.++|++|||+|++ ..|.||+||||||+++.++   .+..|.|.+...      ++..++.|+++||++...     
T Consensus       420 ~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-----  485 (1153)
T PLN03210        420 GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-----  485 (1153)
T ss_pred             HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC------chhChHHHHhcCCEEEcC-----
Confidence            4689999999999987 5999999999999997543   366778876653      344599999999998754     


Q ss_pred             ceeeEEeChhHHHHHHHhhcccCcccc-c-----------------------------cc-------CcCCCCCCCeeEE
Q 041418           83 TINTCSIPGRCRPVLLGVASKVEFIFS-P-----------------------------FM-------DIEDDYDSQLHSF  125 (349)
Q Consensus        83 ~~~~~~mHdli~dla~~i~~~~~~~~~-R-----------------------------~~-------~~~~~~~~~lr~l  125 (349)
                        .+++|||++|+||+++++++....+ |                             ..       ......+++++.|
T Consensus       486 --~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L  563 (1153)
T PLN03210        486 --DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL  563 (1153)
T ss_pred             --CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence              4599999999999999987642110 1                             00       0113456667777


Q ss_pred             EeecCCCCC------CCcchHHhhhccCcccc------------------------------CCcccCCCCCCCEEeecC
Q 041418          126 LCCSPESRH------IDPIDWEKICGMFKLLR------------------------------YPSGIENLFLLRYLKLNI  169 (349)
Q Consensus       126 ~~~~~~~~~------~~~~~~~~~~~~l~~L~------------------------------lp~~i~~l~~L~~L~l~~  169 (349)
                      .+.......      ..+..+.....+++.|.                              +|.++..+++|++|++++
T Consensus       564 ~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~  643 (1153)
T PLN03210        564 KFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRG  643 (1153)
T ss_pred             EEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCC
Confidence            664432110      00011111112233222                              455566667777777766


Q ss_pred             C-CCcccchhHHhcCcCCcEEeccCc-Cccccchhhhccccchhhh-hCCCCCCeeeccCCCCCCCccEEEEccC-----
Q 041418          170 P-SLKSLSSSLLSNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLN-FGLSCLKSLKLANESKMPWLSKIVLAEY-----  241 (349)
Q Consensus       170 ~-~l~~lp~~if~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~~L~~L~l~~~-----  241 (349)
                      + .++.+|. + +.+++|++|++++| .+..+|..++++++|+.|+ ..+++|+.+...  .++++|+.|.+++|     
T Consensus       644 ~~~l~~ip~-l-s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~  719 (1153)
T PLN03210        644 SKNLKEIPD-L-SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKS  719 (1153)
T ss_pred             CCCcCcCCc-c-ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccc
Confidence            4 3556654 3 66777777777776 6667777777777776666 334444444331  35667777777776     


Q ss_pred             --CCCCCccEEEEeecCCCCCCcccccCCc-------------------------------cccccc--------ccccc
Q 041418          242 --LFPHSLTHLSFSNTDRMDDPMPVLETLP-------------------------------LLQKAD--------FWTMG  280 (349)
Q Consensus       242 --~~~~~L~~L~L~~~~l~~~~~~~l~~l~-------------------------------~L~~L~--------~~~~~  280 (349)
                        ....+|+.|++++|.+...|. . ..++                               +|+.|.        .++..
T Consensus       720 ~p~~~~nL~~L~L~~n~i~~lP~-~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s  797 (1153)
T PLN03210        720 FPDISTNISWLDLDETAIEEFPS-N-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS  797 (1153)
T ss_pred             cccccCCcCeeecCCCccccccc-c-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh
Confidence              234577888888877654331 1 1223                               333333        22333


Q ss_pred             cccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          281 NAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       281 ~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      .+.+++|+.|++++|..++.+|..+ .+++|+.|++++|.
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence            3456667777777776667776644 56667777777665

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.71  E-value=2.5e-17  Score=173.24  Aligned_cols=168  Identities=21%  Similarity=0.252  Sum_probs=119.5

Q ss_pred             CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCc-cccchhhhccccchhhh--------------hC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYI-DHTVDEFWKMKKLRHLN--------------FG  215 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l-~~lp~~i~~L~~L~~L~--------------~~  215 (349)
                      +|..++++++|++|++++|.+. .+|..+ +++++|++|++++|.+ ..+|..++++++|++|+              ++
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            5667777778888888777765 567666 7788888888877743 45677777777777775              55


Q ss_pred             CCCCCeeeccCC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418          216 LSCLKSLKLANE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD  275 (349)
Q Consensus       216 l~~L~~L~l~~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~  275 (349)
                      +++|++|+++++          ..+++|+.|++++|          ..+++|+.|++++|.+.+..+..+.++++|+.|+
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  314 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH  314 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence            677777777621          45677777877776          3467788888888877776667777777777776


Q ss_pred             --------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          276 --------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       276 --------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                              ..+...+.+++|+.|++++|...+.+|..++.+++|+.|++++|.
T Consensus       315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence                    111123456778888888877666777777778888888887765

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.69  E-value=1.4e-16  Score=167.45  Aligned_cols=199  Identities=16%  Similarity=0.116  Sum_probs=151.4

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhh---ccCcccc---------CCcccCCCCCCCEEeecCCCCc-ccchhHHhc
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKIC---GMFKLLR---------YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSN  182 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~---~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~  182 (349)
                      ...+++++.|.+.++....   ..+...+   .++++|.         +|  .+.+++|++|++++|.++ .+|..+ ++
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~---~ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~~~~p~~~-~~  162 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSG---PIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGEIPNDI-GS  162 (968)
T ss_pred             HhCCCCCCEEECCCCccCC---cCChHHhccCCCCCEEECcCCccccccC--ccccCCCCEEECcCCcccccCChHH-hc
Confidence            3467889999988876542   2223333   4444444         23  256889999999999887 688888 99


Q ss_pred             CcCCcEEeccCcC-ccccchhhhccccchhhh--------------hCCCCCCeeeccCC----------CCCCCccEEE
Q 041418          183 LLNLYTLDMPFSY-IDHTVDEFWKMKKLRHLN--------------FGLSCLKSLKLANE----------SKMPWLSKIV  237 (349)
Q Consensus       183 l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~--------------~~l~~L~~L~l~~~----------~~~~~L~~L~  237 (349)
                      +++|++|++++|. ...+|..++++++|++|+              +++++|+.|+++++          ..+++|+.|+
T Consensus       163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            9999999999995 457899999999999997              56788888888721          5677888888


Q ss_pred             EccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc--------ccccccccccccceeeeeccCCCC
Q 041418          238 LAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLK  299 (349)
Q Consensus       238 l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~  299 (349)
                      +++|          ..+++|+.|++++|.+.+..+..+..+++|+.|+        ..+.....+++|+.|++++|...+
T Consensus       243 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~  322 (968)
T PLN00113        243 LVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG  322 (968)
T ss_pred             CcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence            8877          5677888888888888777667788888888877        111222467788999998888777


Q ss_pred             CCCcccCCCCCCCEEEecCCC
Q 041418          300 KMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       300 ~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      .+|..+..+++|+.|++++|.
T Consensus       323 ~~~~~~~~l~~L~~L~L~~n~  343 (968)
T PLN00113        323 KIPVALTSLPRLQVLQLWSNK  343 (968)
T ss_pred             cCChhHhcCCCCCEEECcCCC
Confidence            888888889999999998876

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.65  E-value=4.7e-18  Score=160.10  Aligned_cols=201  Identities=19%  Similarity=0.182  Sum_probs=144.5

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhh--ccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcC
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKIC--GMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLN  185 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~--~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~  185 (349)
                      ..+++.+|++++..+...+  +++++++|  ..+..|.        +|..+..-+++-+|+||+|+|.++|.++|.+|+.
T Consensus        74 Ls~Lp~LRsv~~R~N~LKn--sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtD  151 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKN--SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTD  151 (1255)
T ss_pred             hccchhhHHHhhhcccccc--CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHh
Confidence            4567888888888777653  22333332  2333333        8999999999999999999999999999999999


Q ss_pred             CcEEeccCcCccccchhhhccccchhhh--------------hCCCCCCeeeccC-------------------------
Q 041418          186 LYTLDMPFSYIDHTVDEFWKMKKLRHLN--------------FGLSCLKSLKLAN-------------------------  226 (349)
Q Consensus       186 L~~L~l~~~~l~~lp~~i~~L~~L~~L~--------------~~l~~L~~L~l~~-------------------------  226 (349)
                      |-+|||++|.+..+|+.+.+|..|++|.              -.+++|+.|.+++                         
T Consensus       152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            9999999999999999999999999987              2334445554441                         


Q ss_pred             -C--------CCCCCccEEEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc---------cccc
Q 041418          227 -E--------SKMPWLSKIVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---------FWTM  279 (349)
Q Consensus       227 -~--------~~~~~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---------~~~~  279 (349)
                       +        ..+++|++|++++|         ....+|+.|+++.|+++..| ..+.+++.|+.|.         .++.
T Consensus       232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~NkL~FeGiPS  310 (1255)
T KOG0444|consen  232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANNNKLTFEGIPS  310 (1255)
T ss_pred             cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhccCcccccCCcc
Confidence             0        45667778888777         45667777777777765443 4555666666554         1111


Q ss_pred             -----------------------ccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          280 -----------------------GNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       280 -----------------------~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                                             +...+++|+.|.++.|. +-.+|.+|.-++.|+.|++..+|
T Consensus       311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCc
Confidence                                   11245677788887655 77788888888888888888887

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.56  E-value=1.9e-15  Score=141.67  Aligned_cols=179  Identities=19%  Similarity=0.261  Sum_probs=115.7

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhh--------------hC-----
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLN--------------FG-----  215 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~--------------~~-----  215 (349)
                      +..=.++++|+|++|.|+.+-.+-|..+.+|.+|.|+.|.++.+|... .+|++|+.|+              .+     
T Consensus       169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~  248 (873)
T KOG4194|consen  169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQ  248 (873)
T ss_pred             CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhh
Confidence            333345666666666666555555566666666666666666665543 3366666665              22     


Q ss_pred             -------------------CCCCCeeecc-C------C---CCCCCccEEEEccC----------CCCCCccEEEEeecC
Q 041418          216 -------------------LSCLKSLKLA-N------E---SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTD  256 (349)
Q Consensus       216 -------------------l~~L~~L~l~-~------~---~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~  256 (349)
                                         |.++++|++. +      +   .+++.|+.|+++.|          ...+.|+.|+|++|+
T Consensus       249 nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~  328 (873)
T KOG4194|consen  249 NLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR  328 (873)
T ss_pred             hhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence                               3444444444 0      0   55677777777776          567788888888888


Q ss_pred             CCCCCcccccCCccccccc------------------------------cccccc-----ccccccceeeeeccCCCCCC
Q 041418          257 RMDDPMPVLETLPLLQKAD------------------------------FWTMGN-----AAMPKLECLIINPCAYLKKM  301 (349)
Q Consensus       257 l~~~~~~~l~~l~~L~~L~------------------------------~~~~~~-----~~~~~L~~L~l~~c~~l~~l  301 (349)
                      ++..+...|..+..|+.|.                              .|.+++     .++++|+.|.+.+|+ ++.+
T Consensus       329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I  407 (873)
T KOG4194|consen  329 ITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSI  407 (873)
T ss_pred             cccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeec
Confidence            7776666665555555554                              555544     248899999999987 9999


Q ss_pred             Cc-ccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccc
Q 041418          302 PE-HLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPN  339 (349)
Q Consensus       302 p~-~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~  339 (349)
                      |. .+..+++|++|++.+++   +..+++ .|.++ ++.+
T Consensus       408 ~krAfsgl~~LE~LdL~~Na---iaSIq~nAFe~m-~Lk~  443 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNA---IASIQPNAFEPM-ELKE  443 (873)
T ss_pred             chhhhccCcccceecCCCCc---ceeecccccccc-hhhh
Confidence            96 47889999999999998   455555 44444 4443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.53  E-value=8.2e-16  Score=138.32  Aligned_cols=60  Identities=23%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             CCcccC-CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418          152 YPSGIE-NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       152 lp~~i~-~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  213 (349)
                      +|...+ ++.++.+||++.|+++++|+++ +.+.+|++||+++|.++.+|.++|+| .|+.|.
T Consensus       243 lpae~~~~L~~l~vLDLRdNklke~Pde~-clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLKEVPDEI-CLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA  303 (565)
T ss_pred             hHHHHhcccccceeeeccccccccCchHH-HHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence            676665 8999999999999999999999 99999999999999999999999998 777776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.52  E-value=3.3e-16  Score=147.78  Aligned_cols=122  Identities=25%  Similarity=0.307  Sum_probs=103.5

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhh-------------hCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLN-------------FGLS  217 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~-------------~~l~  217 (349)
                      +|..|-.|..|..||||+|++++.|..+ ...+++-.|+|++|+|..||..+ .+|+.|-+|+             .++.
T Consensus        95 iP~diF~l~dLt~lDLShNqL~EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~  173 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLREVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS  173 (1255)
T ss_pred             CCchhcccccceeeecchhhhhhcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence            9999999999999999999999999999 99999999999999999999875 6788887777             6788


Q ss_pred             CCCeeeccCC----------CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418          218 CLKSLKLANE----------SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD  275 (349)
Q Consensus       218 ~L~~L~l~~~----------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~  275 (349)
                      +|++|.++++          ..+++|+.|.+++.           ..+.||..++++.|++...| +.+-++++|..|+
T Consensus       174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP-ecly~l~~LrrLN  251 (1255)
T KOG0444|consen  174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP-ECLYKLRNLRRLN  251 (1255)
T ss_pred             hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-HHHhhhhhhheec
Confidence            8999999854          55677788888876           56778888899988876554 5666777777766

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.43  E-value=1.8e-15  Score=121.64  Aligned_cols=144  Identities=24%  Similarity=0.270  Sum_probs=70.1

Q ss_pred             CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCC-------------Ceeec
Q 041418          158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCL-------------KSLKL  224 (349)
Q Consensus       158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L-------------~~L~l  224 (349)
                      ++.+.+.|-+|+|+++.+|+.| ..+.+|+.|++++|.++++|.+++.|++|++|+-.+..|             +.|++
T Consensus        31 ~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             chhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            3444455555555555555555 555555555555555555555555555555554222222             22222


Q ss_pred             cCCCCCCCccEEEEccC-CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccC
Q 041418          225 ANESKMPWLSKIVLAEY-LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCA  296 (349)
Q Consensus       225 ~~~~~~~~L~~L~l~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~  296 (349)
                      .    ..+|.+-.+-|| ..++.|+.|.++.|.+.-.| +..+++++|+.|.       +.+-+.+.+..|++|.+.+|.
T Consensus       110 t----ynnl~e~~lpgnff~m~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  110 T----YNNLNENSLPGNFFYMTTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             c----ccccccccCCcchhHHHHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            1    112222222222 33445555555665554333 3445555555554       333344556666666666655


Q ss_pred             CCCCCCcccCCC
Q 041418          297 YLKKMPEHLWCI  308 (349)
Q Consensus       297 ~l~~lp~~l~~l  308 (349)
                       +..+|+.++++
T Consensus       185 -l~vlppel~~l  195 (264)
T KOG0617|consen  185 -LTVLPPELANL  195 (264)
T ss_pred             -eeecChhhhhh
Confidence             66666655543

>PLN03210 Resistant to P

Probab=99.42  E-value=1.1e-12  Score=139.72  Aligned_cols=57  Identities=32%  Similarity=0.278  Sum_probs=44.8

Q ss_pred             ccCCCCCCCEEeecCC-CCcccchhHHhcCcCCcEEeccCc-Cccccchhhhccccchhhh
Q 041418          155 GIENLFLLRYLKLNIP-SLKSLSSSLLSNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~-~l~~lp~~if~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~  213 (349)
                      .++.+++|++|++++| .+..+|.++ +++++|+.|++++| .++.+|..+ ++++|++|+
T Consensus       652 ~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~  710 (1153)
T PLN03210        652 DLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN  710 (1153)
T ss_pred             ccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence            4677888888888886 567888888 88888888888888 788888765 566666665

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.41  E-value=2.8e-15  Score=134.91  Aligned_cols=167  Identities=22%  Similarity=0.176  Sum_probs=117.7

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-------------hCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-------------FGLSC  218 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-------------~~l~~  218 (349)
                      +|+.++.+..|+.++.++|.+.++|+++ +.+..|+.|+..+|++..+|++++.+.+|..++             -+++.
T Consensus       106 lp~~i~s~~~l~~l~~s~n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~  184 (565)
T KOG0472|consen  106 LPEQIGSLISLVKLDCSSNELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKR  184 (565)
T ss_pred             ccHHHhhhhhhhhhhccccceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHH
Confidence            7888888888888888888888888887 778888888887778888888877777776666             23555


Q ss_pred             CCeeeccCC---------CCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc------
Q 041418          219 LKSLKLANE---------SKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------  275 (349)
Q Consensus       219 L~~L~l~~~---------~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------  275 (349)
                      |++|+...+         +.+.+|..|++..|        ..+..|+.|.++.|.+...+.+.+..++++..|+      
T Consensus       185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl  264 (565)
T KOG0472|consen  185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL  264 (565)
T ss_pred             HHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence            555555411         44445555555554        4455556666666665555555555666666655      


Q ss_pred             -ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCH
Q 041418          276 -FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQP  321 (349)
Q Consensus       276 -~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~  321 (349)
                       +.+.+..-+.+|++|++++|. +..+|..+|++ .|+.|.+.|+|-
T Consensus       265 ke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  265 KEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence             333333457889999999877 99999999999 999999999993

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.40  E-value=8.6e-14  Score=130.70  Aligned_cols=197  Identities=21%  Similarity=0.185  Sum_probs=110.8

Q ss_pred             CCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      .+..++|.+.++...+...    ..|.++..|.           +|...+...+|+.|+|.+|.|+++..+-++.++.|+
T Consensus        77 p~~t~~LdlsnNkl~~id~----~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHIDF----EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             ccceeeeeccccccccCcH----HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence            3456677777766643211    1223333332           566555556666666666666655443335566666


Q ss_pred             EEeccCcCccccchh-hhccccchhhh--------------------------------------hCCCCCCeeeccCC-
Q 041418          188 TLDMPFSYIDHTVDE-FWKMKKLRHLN--------------------------------------FGLSCLKSLKLANE-  227 (349)
Q Consensus       188 ~L~l~~~~l~~lp~~-i~~L~~L~~L~--------------------------------------~~l~~L~~L~l~~~-  227 (349)
                      +|||+.|.+.++|.. +..-.++++|+                                      .++++|+.|++..+ 
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            666666665555432 23334444444                                      33555555555411 


Q ss_pred             ---------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccccc
Q 041418          228 ---------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGN  281 (349)
Q Consensus       228 ---------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~  281 (349)
                               ..+++|+.|.+..|          -.+.+++.|+|+.|++.......+-+++.|+.|+       ++..+.
T Consensus       233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~  312 (873)
T KOG4194|consen  233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS  312 (873)
T ss_pred             eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence                     44555555555544          3456666677777766665556666667777666       111111


Q ss_pred             -ccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418          282 -AAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       282 -~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~  320 (349)
                       ...++|+.|++++|. +.++|++ +..+..|++|+++++.
T Consensus       313 WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  313 WSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             hhhcccceeEeccccc-cccCChhHHHHHHHhhhhcccccc
Confidence             235778888888876 7777653 5556777777777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.18  E-value=4.5e-12  Score=124.92  Aligned_cols=157  Identities=23%  Similarity=0.238  Sum_probs=83.1

Q ss_pred             CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-------------hCCCCCCeeecc--
Q 041418          161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-------------FGLSCLKSLKLA--  225 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-------------~~l~~L~~L~l~--  225 (349)
                      +|++++++.|+++.+|+.+ +.+.+|+.++...|.+..+|..+...++|+.|.             +++++|++|++.  
T Consensus       242 nl~~~dis~n~l~~lp~wi-~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N  320 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWI-GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN  320 (1081)
T ss_pred             cceeeecchhhhhcchHHH-HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence            4555555555555555555 555555555555555555555555555555554             334444444443  


Q ss_pred             ---------------------------------CCCCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCc
Q 041418          226 ---------------------------------NESKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPM  262 (349)
Q Consensus       226 ---------------------------------~~~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~  262 (349)
                                                       ++...+.|+.|++.+|          ....+|+.|+|++|.+...|.
T Consensus       321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa  400 (1081)
T KOG0618|consen  321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA  400 (1081)
T ss_pred             cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence                                             1122334444444444          445555555555555554444


Q ss_pred             ccccCCccccccc-----------------------------ccccccccccccceeeeeccCCCCCC--CcccCCCCCC
Q 041418          263 PVLETLPLLQKAD-----------------------------FWTMGNAAMPKLECLIINPCAYLKKM--PEHLWCIKSL  311 (349)
Q Consensus       263 ~~l~~l~~L~~L~-----------------------------~~~~~~~~~~~L~~L~l~~c~~l~~l--p~~l~~l~~L  311 (349)
                      ..+.+++.|+.|.                             ...++...++.|+.++++.|. +..+  |... .-|+|
T Consensus       401 s~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~-L~~~~l~~~~-p~p~L  478 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNN-LSEVTLPEAL-PSPNL  478 (1081)
T ss_pred             HHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEecccch-hhhhhhhhhC-CCccc
Confidence            4445555444444                             122244566777777777554 5433  2211 12678


Q ss_pred             CEEEecCCC
Q 041418          312 NKFDCWWPQ  320 (349)
Q Consensus       312 ~~L~l~~~~  320 (349)
                      ++|+++|++
T Consensus       479 kyLdlSGN~  487 (1081)
T KOG0618|consen  479 KYLDLSGNT  487 (1081)
T ss_pred             ceeeccCCc
Confidence            888888877

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.14  E-value=1.4e-11  Score=121.44  Aligned_cols=195  Identities=22%  Similarity=0.215  Sum_probs=137.5

Q ss_pred             CeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEecc
Q 041418          121 QLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMP  192 (349)
Q Consensus       121 ~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~  192 (349)
                      ++++|.+.++.....+..  -..+..++.|.        +|.+++++.+|++|.|.+|.+..+|.++ ..+++|++|+++
T Consensus        46 ~L~~l~lsnn~~~~fp~~--it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQ--ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccccCCch--hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhcccccccc
Confidence            477787777766421111  11222333332        8889999999999999999999999999 999999999999


Q ss_pred             CcCccccchhhhccccchhhh------------------------------hCCCCCCe-eeccCC--------------
Q 041418          193 FSYIDHTVDEFWKMKKLRHLN------------------------------FGLSCLKS-LKLANE--------------  227 (349)
Q Consensus       193 ~~~l~~lp~~i~~L~~L~~L~------------------------------~~l~~L~~-L~l~~~--------------  227 (349)
                      .|.+..+|..+..++.+..+.                              ....++++ |++..+              
T Consensus       123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~  202 (1081)
T KOG0618|consen  123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLE  202 (1081)
T ss_pred             hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchh
Confidence            999999998877666555544                              11111222 332210              


Q ss_pred             -------------CCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc
Q 041418          228 -------------SKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM  279 (349)
Q Consensus       228 -------------~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~  279 (349)
                                   ..-++|+.|+...|        ....+|++++++.|+++..+ +.++.+++|+.+.       ..+.
T Consensus       203 ~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~  281 (1081)
T KOG0618|consen  203 VLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPL  281 (1081)
T ss_pred             hhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHH
Confidence                         22234444444444        56778999999999998888 8889999999888       3333


Q ss_pred             ccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          280 GNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       280 ~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      ......+|+.|.+..|. ++.+|+....+++|+.|++..+.
T Consensus       282 ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  282 RISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             HHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcc
Confidence            33456789999998887 89999878889999999987764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.13  E-value=1.7e-10  Score=115.94  Aligned_cols=151  Identities=20%  Similarity=0.073  Sum_probs=88.7

Q ss_pred             CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCC-------CCCCeeeccCC------
Q 041418          161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGL-------SCLKSLKLANE------  227 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l-------~~L~~L~l~~~------  227 (349)
                      +|+.|++++|+++.+|..    +++|+.|++++|.+..+|.....|..|..-+..+       .+|+.|+++++      
T Consensus       283 ~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP  358 (788)
T PRK15387        283 GLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLP  358 (788)
T ss_pred             hcCEEECcCCcccccccc----ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCC
Confidence            345555555555555532    3567777777777777665333322221111111       25666666522      


Q ss_pred             CCCCCccEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccccccccccccceeeeeccCC
Q 041418          228 SKMPWLSKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWTMGNAAMPKLECLIINPCAY  297 (349)
Q Consensus       228 ~~~~~L~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c~~  297 (349)
                      ...++|+.|++++|      ..+.+|+.|++++|.++..+. .   .++|+.|+    .+..-...+.+|+.|++++|. 
T Consensus       359 ~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~-l---~s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~Nq-  433 (788)
T PRK15387        359 TLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV-L---PSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ-  433 (788)
T ss_pred             CCCcccceehhhccccccCcccccccceEEecCCcccCCCC-c---ccCCCEEEccCCcCCCCCcchhhhhhhhhccCc-
Confidence            12345666666655      233467778888877765432 1   23455554    111000223568889999877 


Q ss_pred             CCCCCcccCCCCCCCEEEecCCC
Q 041418          298 LKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       298 l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      +..+|..++++++|+.|++++|+
T Consensus       434 Lt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        434 LTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             ccccChHHhhccCCCeEECCCCC
Confidence            88999989999999999999998

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.11  E-value=1.3e-11  Score=111.20  Aligned_cols=176  Identities=17%  Similarity=0.129  Sum_probs=125.3

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccC-cCccccchh-hhccccchhhh--------------hCCC
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPF-SYIDHTVDE-FWKMKKLRHLN--------------FGLS  217 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~-~~l~~lp~~-i~~L~~L~~L~--------------~~l~  217 (349)
                      .+|+.+++||.||||+|.|+.|-+..|..+.+|..|-+-+ |.|+.+|.+ +++|..|+.|.              ..++
T Consensus        85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            5688999999999999999988777779999988887766 599999886 57888888776              4455


Q ss_pred             CCCeeeccCC----------CCCCCccEEEEccC----------------------------------------------
Q 041418          218 CLKSLKLANE----------SKMPWLSKIVLAEY----------------------------------------------  241 (349)
Q Consensus       218 ~L~~L~l~~~----------~~~~~L~~L~l~~~----------------------------------------------  241 (349)
                      +|..|.++++          ..+..++.+.+..+                                              
T Consensus       165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf  244 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKF  244 (498)
T ss_pred             hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhh
Confidence            5555554411          11111111111111                                              


Q ss_pred             --------------------------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccc-cc---ccccccc
Q 041418          242 --------------------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWT-MG---NAAMPKL  287 (349)
Q Consensus       242 --------------------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~-~~---~~~~~~L  287 (349)
                                                ..+++|+.|+|++|.++......|+.+..++.|.    .+. ++   ...+..|
T Consensus       245 ~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L  324 (498)
T KOG4237|consen  245 LCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL  324 (498)
T ss_pred             hhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence                                      6799999999999999998888999998888887    110 11   1356789


Q ss_pred             ceeeeeccCCCCCCCcccCCCCCCCEEEecCCC------HHHHHhhhh
Q 041418          288 ECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ------PELRQKLRE  329 (349)
Q Consensus       288 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~------~~~~~~l~~  329 (349)
                      +.|++.+|....--|..+..+.+|..|++-.+|      -.|..+|-.
T Consensus       325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr  372 (498)
T KOG4237|consen  325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR  372 (498)
T ss_pred             eeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh
Confidence            999999988444446668889999999986654      455555433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.09  E-value=6.3e-10  Score=112.25  Aligned_cols=145  Identities=17%  Similarity=0.212  Sum_probs=76.3

Q ss_pred             CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEc
Q 041418          160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLA  239 (349)
Q Consensus       160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~  239 (349)
                      ++|++|++++|.++.+|..+ .  .+|+.|++++|.+..+|..+.  .+|+.|+-...+|..+.-   .-+++|+.|+++
T Consensus       220 ~nL~~L~Ls~N~LtsLP~~l-~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~---~l~~sL~~L~Ls  291 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPATL-P--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPE---NLPEELRYLSVY  291 (754)
T ss_pred             cCCCEEECCCCccccCChhh-h--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCcccc---ccCCCCcEEECC
Confidence            36666666666666666554 2  356666666666666666543  234444311122222211   112356666666


Q ss_pred             cC-------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCccc
Q 041418          240 EY-------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHL  305 (349)
Q Consensus       240 ~~-------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l  305 (349)
                      +|       ...++|+.|++++|.++..+...   .++|+.|.       .++  ..-.++|+.|++++|. +..+|..+
T Consensus       292 ~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~LP--~~l~~sL~~L~Ls~N~-L~~LP~~l  365 (754)
T PRK15370        292 DNSIRTLPAHLPSGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTSLP--ASLPPELQVLDVSKNQ-ITVLPETL  365 (754)
T ss_pred             CCccccCcccchhhHHHHHhcCCccccCCccc---cccceeccccCCccccCC--hhhcCcccEEECCCCC-CCcCChhh
Confidence            65       11235666666666665433211   13444444       111  1122567777777765 66677644


Q ss_pred             CCCCCCCEEEecCCC
Q 041418          306 WCIKSLNKFDCWWPQ  320 (349)
Q Consensus       306 ~~l~~L~~L~l~~~~  320 (349)
                        .++|+.|++++|.
T Consensus       366 --p~~L~~LdLs~N~  378 (754)
T PRK15370        366 --PPTITTLDVSRNA  378 (754)
T ss_pred             --cCCcCEEECCCCc
Confidence              2577777777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.04  E-value=6.3e-12  Score=101.35  Aligned_cols=143  Identities=20%  Similarity=0.183  Sum_probs=100.4

Q ss_pred             cCCCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccC
Q 041418          114 IEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPF  193 (349)
Q Consensus       114 ~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~  193 (349)
                      +...+++.+..+.+..+....                 +|+.|..+.+|+.|++++|.++++|.++ +.++.|+.|+++-
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~-----------------vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgm   88 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTV-----------------VPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGM   88 (264)
T ss_pred             ccccchhhhhhhhcccCceee-----------------cCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecch
Confidence            344556666666666554431                 7888999999999999999999999999 9999999999999


Q ss_pred             cCccccchhhhccccchhhhhCCCCCCeeeccCC-CCCCCccEEEEccC---------CCCCCccEEEEeecCCCCCCcc
Q 041418          194 SYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANE-SKMPWLSKIVLAEY---------LFPHSLTHLSFSNTDRMDDPMP  263 (349)
Q Consensus       194 ~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~-~~~~~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~  263 (349)
                      |.+..+|.++|.++-|+.|+-...+|..=.+-++ ..++.|+.|+++.|         +.+++|+.|.+..|.+...| .
T Consensus        89 nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lp-k  167 (264)
T KOG0617|consen   89 NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLP-K  167 (264)
T ss_pred             hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCc-H
Confidence            9999999999999999999833333332222111 22344555555555         56677777777777665444 4


Q ss_pred             cccCCccccccc
Q 041418          264 VLETLPLLQKAD  275 (349)
Q Consensus       264 ~l~~l~~L~~L~  275 (349)
                      .++.+..|+.|+
T Consensus       168 eig~lt~lrelh  179 (264)
T KOG0617|consen  168 EIGDLTRLRELH  179 (264)
T ss_pred             HHHHHHHHHHHh
Confidence            556666666665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.04  E-value=2.5e-10  Score=116.85  Aligned_cols=98  Identities=24%  Similarity=0.297  Sum_probs=79.3

Q ss_pred             CcCCCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHH
Q 041418          113 DIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLL  180 (349)
Q Consensus       113 ~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if  180 (349)
                      ......++++++|.+..+...  .......+|..++.|+            +|++|++|-+||||+++++.++.+|.++ 
T Consensus       538 ~~~~~~~~~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l-  614 (889)
T KOG4658|consen  538 IAGSSENPKLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL-  614 (889)
T ss_pred             ccCCCCCCccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH-
Confidence            344566778999999988630  0123334566666666            9999999999999999999999999999 


Q ss_pred             hcCcCCcEEeccCc-Cccccchhhhccccchhhh
Q 041418          181 SNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       181 ~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~  213 (349)
                      ++|..|.+|++..+ .+..+|..+..|++||+|.
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEE
Confidence            99999999999999 6777777677799999998

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.96  E-value=1.4e-09  Score=109.50  Aligned_cols=150  Identities=21%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccch-------hhhhCCCCCCeeeccCC----
Q 041418          159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLR-------HLNFGLSCLKSLKLANE----  227 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~-------~L~~~l~~L~~L~l~~~----  227 (349)
                      .++|++|++++|+++.+|..    .++|+.|++++|.+..+|....+|..|.       .+-...++|+.|+++++    
T Consensus       241 p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        241 PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS  316 (788)
T ss_pred             CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhchhhcCEEECcCCccccccccccccceeECCCCcccc
Confidence            46788888888888888753    3567777777777776665333222221       00022345666666522    


Q ss_pred             --CCCCCccEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccccccccccccceeeeecc
Q 041418          228 --SKMPWLSKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWTMGNAAMPKLECLIINPC  295 (349)
Q Consensus       228 --~~~~~L~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c  295 (349)
                        ....+|+.|++++|      ....+|+.|++++|+++..|. .   .++|+.|.    .+..-....++|+.|++++|
T Consensus       317 Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~-l---p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N  392 (788)
T PRK15387        317 LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT-L---PSELYKLWAYNNRLTSLPALPSGLKELIVSGN  392 (788)
T ss_pred             CCCCcccccccccccCccccccccccccceEecCCCccCCCCC-C---CcccceehhhccccccCcccccccceEEecCC
Confidence              12345667777666      222478888888888776442 1   12333333    00000012245666677665


Q ss_pred             CCCCCCCcccCCCCCCCEEEecCCC
Q 041418          296 AYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       296 ~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      . +..+|..   .++|+.|++++|.
T Consensus       393 ~-Lt~LP~l---~s~L~~LdLS~N~  413 (788)
T PRK15387        393 R-LTSLPVL---PSELKELMVSGNR  413 (788)
T ss_pred             c-ccCCCCc---ccCCCEEEccCCc
Confidence            4 5566642   2456666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.94  E-value=1.3e-09  Score=109.99  Aligned_cols=184  Identities=20%  Similarity=0.221  Sum_probs=100.1

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEec
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDM  191 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l  191 (349)
                      +.++.|.+.++....+    +...+.+++.|.        +|..+.  .+|+.|++++|.+..+|..+ .  .+|++|++
T Consensus       199 ~~L~~L~Ls~N~LtsL----P~~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l-~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKSL----PENLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERL-P--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCcC----ChhhccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhH-h--CCCCEEEC
Confidence            4566777766655432    222334454444        343332  24666666666666666555 2  35666666


Q ss_pred             cCcCccccchhhhccccchhhh---hCC--------CCCCeeeccCC-------CCCCCccEEEEccC-------CCCCC
Q 041418          192 PFSYIDHTVDEFWKMKKLRHLN---FGL--------SCLKSLKLANE-------SKMPWLSKIVLAEY-------LFPHS  246 (349)
Q Consensus       192 ~~~~l~~lp~~i~~L~~L~~L~---~~l--------~~L~~L~l~~~-------~~~~~L~~L~l~~~-------~~~~~  246 (349)
                      ++|.+..+|..+.  ++|++|+   .++        ++|+.|+++++       .-.++|+.|.+++|       ...++
T Consensus       270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~s  347 (754)
T PRK15370        270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPE  347 (754)
T ss_pred             cCCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCc
Confidence            6665555555432  2344443   111        12222322211       22356777777666       22357


Q ss_pred             ccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCccc----CCCCCCCEEE
Q 041418          247 LTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHL----WCIKSLNKFD  315 (349)
Q Consensus       247 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l----~~l~~L~~L~  315 (349)
                      |+.|++++|++...+. .+  .++|+.|+       .++.  ....+|+.|++++|. +..+|..+    +.++++..|+
T Consensus       348 L~~L~Ls~N~L~~LP~-~l--p~~L~~LdLs~N~Lt~LP~--~l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~  421 (754)
T PRK15370        348 LQVLDVSKNQITVLPE-TL--PPTITTLDVSRNALTNLPE--NLPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRII  421 (754)
T ss_pred             ccEEECCCCCCCcCCh-hh--cCCcCEEECCCCcCCCCCH--hHHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEE
Confidence            8888888887765432 22  24555555       2211  122468888888876 77777643    3457889999


Q ss_pred             ecCCC
Q 041418          316 CWWPQ  320 (349)
Q Consensus       316 l~~~~  320 (349)
                      +.++|
T Consensus       422 L~~Np  426 (754)
T PRK15370        422 VEYNP  426 (754)
T ss_pred             eeCCC
Confidence            99988

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.90  E-value=1.5e-10  Score=104.62  Aligned_cols=184  Identities=16%  Similarity=0.121  Sum_probs=117.2

Q ss_pred             CCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc-chhhhccccchhhh---------------hCCCCCCeeecc
Q 041418          162 LRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLN---------------FGLSCLKSLKLA  225 (349)
Q Consensus       162 L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~---------------~~l~~L~~L~l~  225 (349)
                      -..++|..|.|+.+|+..|+.+++|+.|||++|.|+.| |..+..|.+|..|-               +++..|+.|.+.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            46788999999999999999999999999999999998 77888888877765               455566666554


Q ss_pred             CC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCC------------cccccCCcc---
Q 041418          226 NE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDP------------MPVLETLPL---  270 (349)
Q Consensus       226 ~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~------------~~~l~~l~~---  270 (349)
                      ..          ..+++|..|.+..|          ..+.+++.+.+..|.+..+.            +-.++....   
T Consensus       149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p  228 (498)
T KOG4237|consen  149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP  228 (498)
T ss_pred             hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence            11          44556666665555          34555555555544421110            000000000   


Q ss_pred             -------------------ccccc------ccccc------cccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecC
Q 041418          271 -------------------LQKAD------FWTMG------NAAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWW  318 (349)
Q Consensus       271 -------------------L~~L~------~~~~~------~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~  318 (349)
                                         ++.+.      ..+..      ...+++|+.|++++|+ ++.+ +.++..+..+++|.+.+
T Consensus       229 ~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~-i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  229 YRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK-ITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             HHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc-cchhhhhhhcchhhhhhhhcCc
Confidence                               00000      00000      1357889999999887 6666 44688888888888888


Q ss_pred             CCHHHHHhhhhcccccccccceeeeccccc
Q 041418          319 PQPELRQKLREFEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       319 ~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~  348 (349)
                      +.-+++..-  .|..++.+..+.+++|.+|
T Consensus       308 N~l~~v~~~--~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  308 NKLEFVSSG--MFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             chHHHHHHH--hhhccccceeeeecCCeeE
Confidence            874333322  5666666667777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.82  E-value=2.7e-09  Score=98.01  Aligned_cols=156  Identities=21%  Similarity=0.151  Sum_probs=79.7

Q ss_pred             cccCCCCCCCEEeecCCCCcc-cchhHHhcCcC---CcEEeccCcCccc-----cchhhhcc-ccchhhhhCCCCCCeee
Q 041418          154 SGIENLFLLRYLKLNIPSLKS-LSSSLLSNLLN---LYTLDMPFSYIDH-----TVDEFWKM-KKLRHLNFGLSCLKSLK  223 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~-lp~~if~~l~~---L~~L~l~~~~l~~-----lp~~i~~L-~~L~~L~~~l~~L~~L~  223 (349)
                      ..+..+++|++|++++|.+.. .+..+ ..+.+   |++|++++|.+..     +...+..+ ++|+.|          +
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L----------~  143 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL----------V  143 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE----------E
Confidence            345556677777777776653 33333 44444   7777777775442     22223333 333333          3


Q ss_pred             ccCC--------------CCCCCccEEEEccC--------------CCCCCccEEEEeecCCCCCCc----ccccCCccc
Q 041418          224 LANE--------------SKMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPM----PVLETLPLL  271 (349)
Q Consensus       224 l~~~--------------~~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L  271 (349)
                      +++.              ..+++|+.|++++|              ...++|+.|++++|.+.+...    ..+..+++|
T Consensus       144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L  223 (319)
T cd00116         144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL  223 (319)
T ss_pred             cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence            3200              23345555555555              223467777777666553322    223344555


Q ss_pred             cccc----ccc----cc-ccc----ccccceeeeeccCCC----CCCCcccCCCCCCCEEEecCCC
Q 041418          272 QKAD----FWT----MG-NAA----MPKLECLIINPCAYL----KKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       272 ~~L~----~~~----~~-~~~----~~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      ++|+    ...    .. ...    .+.|+.|++++|...    ..++..+..+++|+++++++|+
T Consensus       224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            5555    000    00 011    257888888877621    1233334556778888887776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.76  E-value=3.9e-09  Score=87.67  Aligned_cols=124  Identities=22%  Similarity=0.230  Sum_probs=42.7

Q ss_pred             CCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccC-CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC
Q 041418          117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIE-NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY  195 (349)
Q Consensus       117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~-~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~  195 (349)
                      .+..++|.|.+.++....                  .+.++ .+.+|+.|++++|.|+.++ .+ ..+++|++|++++|.
T Consensus        16 ~n~~~~~~L~L~~n~I~~------------------Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l-~~L~~L~~L~L~~N~   75 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST------------------IENLGATLDKLEVLDLSNNQITKLE-GL-PGLPRLKTLDLSNNR   75 (175)
T ss_dssp             --------------------------------------S--TT-TT--EEE-TTS--S--T-T-----TT--EEE--SS-
T ss_pred             cccccccccccccccccc------------------ccchhhhhcCCCEEECCCCCCcccc-Cc-cChhhhhhcccCCCC
Confidence            344567888888776641                  13344 4678999999999999886 45 889999999999999


Q ss_pred             ccccchhhh-ccccchhhhhCCCCCCeeeccCC--CCCCCccEEEEccCCCCCCccEEEEeecCCCCCC---cccccCCc
Q 041418          196 IDHTVDEFW-KMKKLRHLNFGLSCLKSLKLANE--SKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDP---MPVLETLP  269 (349)
Q Consensus       196 l~~lp~~i~-~L~~L~~L~~~l~~L~~L~l~~~--~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~---~~~l~~l~  269 (349)
                      ++.+++.+. .+++|++|+          ++++  ..+..+..|     ..+++|+.|++.+|.+....   ...+..+|
T Consensus        76 I~~i~~~l~~~lp~L~~L~----------L~~N~I~~l~~l~~L-----~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP  140 (175)
T PF14580_consen   76 ISSISEGLDKNLPNLQELY----------LSNNKISDLNELEPL-----SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP  140 (175)
T ss_dssp             --S-CHHHHHH-TT--EEE-----------TTS---SCCCCGGG-----GG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred             CCccccchHHhCCcCCEEE----------CcCCcCCChHHhHHH-----HcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence            998876553 455554443          3211  112222222     45677888888888765443   22445567


Q ss_pred             cccccc
Q 041418          270 LLQKAD  275 (349)
Q Consensus       270 ~L~~L~  275 (349)
                      +|+.|+
T Consensus       141 ~Lk~LD  146 (175)
T PF14580_consen  141 SLKVLD  146 (175)
T ss_dssp             T-SEET
T ss_pred             hhheeC
Confidence            777766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.70  E-value=8e-09  Score=94.87  Aligned_cols=188  Identities=20%  Similarity=0.161  Sum_probs=113.7

Q ss_pred             CCcccCCCCCCCEEeecCCCCcc-------cchhHHhcCcCCcEEeccCcCcc-ccchhhhccccchhhhhCCCCCCeee
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKS-------LSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMKKLRHLNFGLSCLKSLK  223 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~-------lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~l~~L~~L~  223 (349)
                      ++..+...+.+++++++++.+..       ++..+ .++++|+.|++++|.+. ..+..+..+.+      . ++|+.|+
T Consensus        43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~------~-~~L~~L~  114 (319)
T cd00116          43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL-TKGCGLQELDLSDNALGPDGCGVLESLLR------S-SSLQELK  114 (319)
T ss_pred             HHHHHhhCCCceEEeccccccCCcchHHHHHHHHH-HhcCceeEEEccCCCCChhHHHHHHHHhc------c-CcccEEE
Confidence            34456667778889988876653       23344 78889999999998655 34555554443      1 3355555


Q ss_pred             ccCC--------------CCC-CCccEEEEccC--------------CCCCCccEEEEeecCCCCCCcc----cccCCcc
Q 041418          224 LANE--------------SKM-PWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPMP----VLETLPL  270 (349)
Q Consensus       224 l~~~--------------~~~-~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~~----~l~~l~~  270 (349)
                      +++.              ..+ ++|+.|++++|              ..+++|+.|++++|.+.+....    .+..+++
T Consensus       115 ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~  194 (319)
T cd00116         115 LNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCN  194 (319)
T ss_pred             eeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCC
Confidence            5411              334 78999999988              3456899999999988754332    2344567


Q ss_pred             ccccc----c--------cccccccccccceeeeeccCCCCCC-----Cccc-CCCCCCCEEEecCCCHH--HHHhhhhc
Q 041418          271 LQKAD----F--------WTMGNAAMPKLECLIINPCAYLKKM-----PEHL-WCIKSLNKFDCWWPQPE--LRQKLREF  330 (349)
Q Consensus       271 L~~L~----~--------~~~~~~~~~~L~~L~l~~c~~l~~l-----p~~l-~~l~~L~~L~l~~~~~~--~~~~l~~~  330 (349)
                      |+.|+    .        +......+++|+.|++++|+ +...     ...+ ...+.|+.|++++|.-.  -...+...
T Consensus       195 L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~  273 (319)
T cd00116         195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV  273 (319)
T ss_pred             CCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH
Confidence            77777    0        11112346778999998886 4421     1111 12478899999888621  12222222


Q ss_pred             ccccccccceeeeccccc
Q 041418          331 EDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       331 ~~~i~~ip~i~~~~~~~~  348 (349)
                      .....++..+.+.+|-++
T Consensus       274 ~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         274 LAEKESLLELDLRGNKFG  291 (319)
T ss_pred             HhcCCCccEEECCCCCCc
Confidence            223355666666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.59  E-value=8.7e-09  Score=85.61  Aligned_cols=130  Identities=24%  Similarity=0.210  Sum_probs=37.5

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHh-cCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCcc
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLS-NLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLS  234 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~-~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~  234 (349)
                      +.+..+++.|+|++|.|+.+. .+ + .+.+|+.|++++|.++.++. +..++          +|++|+++    -..++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie-~L-~~~l~~L~~L~Ls~N~I~~l~~-l~~L~----------~L~~L~L~----~N~I~   77 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIE-NL-GATLDKLEVLDLSNNQITKLEG-LPGLP----------RLKTLDLS----NNRIS   77 (175)
T ss_dssp             ----------------------S---TT-TT--EEE-TTS--S--TT-----T----------T--EEE------SS---
T ss_pred             ccccccccccccccccccccc-ch-hhhhcCCCEEECCCCCCccccC-ccChh----------hhhhcccC----CCCCC
Confidence            445557899999999999884 45 6 68999999999999988763 44333          33333332    11111


Q ss_pred             EEEEccC-CCCCCccEEEEeecCCCCC-CcccccCCcccccccccccccccccccceeeeeccCCCCCC---CcccCCCC
Q 041418          235 KIVLAEY-LFPHSLTHLSFSNTDRMDD-PMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM---PEHLWCIK  309 (349)
Q Consensus       235 ~L~l~~~-~~~~~L~~L~L~~~~l~~~-~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l---p~~l~~l~  309 (349)
                      .+. .+. ..+++|+.|.+++|++... ....++.                +++|+.|++.+|+-...-   ..-+..+|
T Consensus        78 ~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~----------------l~~L~~L~L~~NPv~~~~~YR~~vi~~lP  140 (175)
T PF14580_consen   78 SIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSS----------------LPKLRVLSLEGNPVCEKKNYRLFVIYKLP  140 (175)
T ss_dssp             S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-----------------TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred             ccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHc----------------CCCcceeeccCCcccchhhHHHHHHHHcC
Confidence            110 000 2468899999999987642 2344444                445555555554433211   22244555


Q ss_pred             CCCEEEecCC
Q 041418          310 SLNKFDCWWP  319 (349)
Q Consensus       310 ~L~~L~l~~~  319 (349)
                      +|+.||-...
T Consensus       141 ~Lk~LD~~~V  150 (175)
T PF14580_consen  141 SLKVLDGQDV  150 (175)
T ss_dssp             T-SEETTEET
T ss_pred             hhheeCCEEc
Confidence            6666655443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=1.6e-08  Score=92.77  Aligned_cols=157  Identities=22%  Similarity=0.192  Sum_probs=89.3

Q ss_pred             ccCCCCCCCEEeecCCCCcccc--hhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeecc--C--C-
Q 041418          155 GIENLFLLRYLKLNIPSLKSLS--SSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLA--N--E-  227 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp--~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~--~--~-  227 (349)
                      ....+++++.|||+.|-+...-  ..+...|++|+.|+++.|.+.....+...        ..+.+|+.|.++  |  . 
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~--------~~l~~lK~L~l~~CGls~k  212 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT--------LLLSHLKQLVLNSCGLSWK  212 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch--------hhhhhhheEEeccCCCCHH
Confidence            4567888888888888665322  12226788888888888855433222100        123344444443  0  0 


Q ss_pred             ------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCC-cccccCCccccccc-------cc--cc--
Q 041418          228 ------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKAD-------FW--TM--  279 (349)
Q Consensus       228 ------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~-------~~--~~--  279 (349)
                            ..+|+|+.|++.+|          ..++.|+.|+|++|++...+ ....+.+|+|..|.       ++  +.  
T Consensus       213 ~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~  292 (505)
T KOG3207|consen  213 DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE  292 (505)
T ss_pred             HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCcc
Confidence                  45667777776666          45677788888887765433 34556666666665       10  00  


Q ss_pred             ---ccccccccceeeeeccCCCCCCCc--ccCCCCCCCEEEecCCC
Q 041418          280 ---GNAAMPKLECLIINPCAYLKKMPE--HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       280 ---~~~~~~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~~  320 (349)
                         ....|++|++|+++.|+ +...+.  .+..+++|+.|.+..++
T Consensus       293 s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  293 SLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             chhhhcccccceeeecccCc-cccccccchhhccchhhhhhccccc
Confidence               01347778888777776 433332  13445555665554443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.53  E-value=7.8e-08  Score=65.64  Aligned_cols=43  Identities=28%  Similarity=0.278  Sum_probs=36.9

Q ss_pred             CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh
Q 041418          160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE  202 (349)
Q Consensus       160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~  202 (349)
                      ++|++|++++|+++.+|+..|.++++|++|++++|.++.+|+.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~   43 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD   43 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH
Confidence            4688999999999999987778899999999998888888764

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.47  E-value=1.6e-08  Score=95.61  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=98.7

Q ss_pred             CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE
Q 041418          159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL  238 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l  238 (349)
                      +..-...|++.|++.++|..+ +.+..|+.+.+..|.+..+|..+++|..|.+|+-....|+.|...  ...--|+.|-+
T Consensus        74 ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lpLkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG--LCDLPLKVLIV  150 (722)
T ss_pred             ccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh--hhcCcceeEEE
Confidence            334445666666666666666 666666666666666666666666666666665333333333220  00012344444


Q ss_pred             ccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCC
Q 041418          239 AEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMP  302 (349)
Q Consensus       239 ~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp  302 (349)
                      +.|         +....|..|+.+.|.+...+ ..++.+.+|+.|.       ..+.+...+ .|..|+++.|+ +..||
T Consensus       151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iP  227 (722)
T KOG0532|consen  151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLP  227 (722)
T ss_pred             ecCccccCCcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecc
Confidence            443         45667778888888765444 5667777777666       333333433 38888998655 99999


Q ss_pred             cccCCCCCCCEEEecCCC
Q 041418          303 EHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       303 ~~l~~l~~L~~L~l~~~~  320 (349)
                      ..+..|+.|++|.+.+||
T Consensus       228 v~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  228 VDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             hhhhhhhhheeeeeccCC
Confidence            999999999999999998

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.47  E-value=1.1e-07  Score=90.25  Aligned_cols=160  Identities=18%  Similarity=0.223  Sum_probs=99.7

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCc-CCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCC-CCCC
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLL-NLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANES-KMPW  232 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~-~~~~  232 (349)
                      .+..++.++.|++.+|.++++|+.. +.+. +|+.|++++|.+..+|..++.+++|+.|+-.-.++..+.-.  . ..+.
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~--~~~~~~  187 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL--LSNLSN  187 (394)
T ss_pred             hhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhh--hhhhhh
Confidence            3444566777777777777777666 5563 77777777777777766666666666655111111111110  1 4556


Q ss_pred             ccEEEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccC
Q 041418          233 LSKIVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCA  296 (349)
Q Consensus       233 L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~  296 (349)
                      |+.|.++++         ..+.+|+.|.+++|.... .+..+.++.++..+.       ......+.+++++.|++++|.
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence            666666666         134458888888885332 224455555555554       112333567889999999877


Q ss_pred             CCCCCCcccCCCCCCCEEEecCCC
Q 041418          297 YLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       297 ~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                       +..++. ++.+.+|+.|+++++.
T Consensus       267 -i~~i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         267 -ISSISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             -cccccc-ccccCccCEEeccCcc
Confidence             888887 8889999999998865

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.42  E-value=3e-07  Score=57.99  Aligned_cols=41  Identities=32%  Similarity=0.292  Sum_probs=36.0

Q ss_pred             CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418          160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD  201 (349)
Q Consensus       160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~  201 (349)
                      ++|++|++++|+|+.+|+.+ ++|++|++|++++|.++.+|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCCcC
Confidence            57999999999999999988 999999999999999988764

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.39  E-value=3.3e-08  Score=86.74  Aligned_cols=47  Identities=15%  Similarity=0.071  Sum_probs=37.4

Q ss_pred             CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccc
Q 041418          159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMK  207 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~  207 (349)
                      -..|..+|||+|.|+.+.+++ .-++.++.|+++.|.+..+-. +..|+
T Consensus       283 Wq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~  329 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELP  329 (490)
T ss_pred             Hhhhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh-hhhcc
Confidence            356888999999999999888 888999999999998876643 44333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.38  E-value=4.4e-08  Score=92.65  Aligned_cols=60  Identities=28%  Similarity=0.350  Sum_probs=53.6

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  213 (349)
                      +|..++++..|.+|+++.|.++.+|..+ +.|+ |+.|-+++|+++.+|+.++.+..|.+|+
T Consensus       113 ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld  172 (722)
T KOG0532|consen  113 IPEAICNLEALTFLDLSSNQLSHLPDGL-CDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLD  172 (722)
T ss_pred             cchhhhhhhHHHHhhhccchhhcCChhh-hcCc-ceeEEEecCccccCCcccccchhHHHhh
Confidence            8899999999999999999999999988 7665 8999999999999999999888888888

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.6e-07  Score=86.33  Aligned_cols=152  Identities=18%  Similarity=0.182  Sum_probs=103.7

Q ss_pred             CCCCCCCEEeecCCCCcccch--hHHhcCcCCcEEeccCcCcccc---chhhhccccchhhhhCCCCCCeeeccCC----
Q 041418          157 ENLFLLRYLKLNIPSLKSLSS--SLLSNLLNLYTLDMPFSYIDHT---VDEFWKMKKLRHLNFGLSCLKSLKLANE----  227 (349)
Q Consensus       157 ~~l~~L~~L~l~~~~l~~lp~--~if~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~~~l~~L~~L~l~~~----  227 (349)
                      .++++|+...|.++.+...+.  .. ..+++++.|||+.|-+...   -.-...|++|+.|          +++.+    
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~-k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L----------Nls~Nrl~~  186 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYS-KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL----------NLSSNRLSN  186 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhh-hhCCcceeecchhhhHHhHHHHHHHHHhcccchhc----------ccccccccC
Confidence            568889999999998887774  55 7899999999999954443   2223455555444          44411    


Q ss_pred             -------CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc--cc
Q 041418          228 -------SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT--MG  280 (349)
Q Consensus       228 -------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~--~~  280 (349)
                             ..+++|+.|.+++|           ..+++|+.|.|..|............+..|+.|+       ...  ..
T Consensus       187 ~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~  266 (505)
T KOG3207|consen  187 FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK  266 (505)
T ss_pred             CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc
Confidence                   45678999999988           6788999999998852211112223345555555       111  12


Q ss_pred             cccccccceeeeeccCCCCCC--Ccc-----cCCCCCCCEEEecCCC
Q 041418          281 NAAMPKLECLIINPCAYLKKM--PEH-----LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       281 ~~~~~~L~~L~l~~c~~l~~l--p~~-----l~~l~~L~~L~l~~~~  320 (349)
                      .+.||.|..|.++.|. +.++  |+.     ...+++|++|++..++
T Consensus       267 ~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  267 VGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             cccccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence            3678999999999876 5554  432     3568999999999988

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.30  E-value=1.6e-07  Score=82.53  Aligned_cols=38  Identities=13%  Similarity=0.127  Sum_probs=29.8

Q ss_pred             ccccccceeeeeccCCCCCCCc--ccCCCCCCCEEEecCCC
Q 041418          282 AAMPKLECLIINPCAYLKKMPE--HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       282 ~~~~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~l~~~~  320 (349)
                      +.+-+|..|++++|+ +..+..  ++|++|.|+.+.+.++|
T Consensus       371 ~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  371 RKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             Hhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCC
Confidence            456778888998876 655543  58899999999999998

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.22  E-value=8.6e-07  Score=60.41  Aligned_cols=60  Identities=28%  Similarity=0.317  Sum_probs=49.3

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCC-cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYP-SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI  196 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp-~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l  196 (349)
                      ++++.+.+.++....                 +| ..|.++++|++|++++|.++.+|+..|.++++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~-----------------i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE-----------------IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE-----------------ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc-----------------cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            356777777664431                 33 5788999999999999999999998889999999999999864

...

>PLN03150 hypothetical protein; Provisional

Probab=98.21  E-value=3.4e-06  Score=84.57  Aligned_cols=45  Identities=16%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             CCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcc-ccchhhhccc
Q 041418          162 LRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMK  207 (349)
Q Consensus       162 L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~  207 (349)
                      ++.|+|++|.+. .+|..+ +++++|+.|+|++|.+. .+|..++.++
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~  466 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSIT  466 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCC
Confidence            667888888876 678777 88888888888888554 6777665444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.11  E-value=4.1e-06  Score=79.50  Aligned_cols=151  Identities=26%  Similarity=0.295  Sum_probs=114.3

Q ss_pred             EEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccc-cchhhhhCCCCCCee--eccCCCCCCCccEEEEcc
Q 041418          164 YLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMK-KLRHLNFGLSCLKSL--KLANESKMPWLSKIVLAE  240 (349)
Q Consensus       164 ~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~-~L~~L~~~l~~L~~L--~l~~~~~~~~L~~L~l~~  240 (349)
                      .+++..+.+..-+..+ ..++.+..|++.+|.+.++|...+.+. +|+.|+-.-.+++.+  .+   ..+++|+.|+++.
T Consensus        97 ~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~---~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL---RNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh---hccccccccccCC
Confidence            6888888886666667 788999999999999999999888885 888888444555555  44   6788999999998


Q ss_pred             C--------C-CCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcc
Q 041418          241 Y--------L-FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEH  304 (349)
Q Consensus       241 ~--------~-~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~  304 (349)
                      |        . ..++|+.|++++|.+...+.. .+...+|++|.       ..+.....+.++..+.+.++. +..+|..
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~  250 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES  250 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch
Confidence            8        2 788999999999998766532 23344466555       122223556777788877665 6776778


Q ss_pred             cCCCCCCCEEEecCCC
Q 041418          305 LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       305 l~~l~~L~~L~l~~~~  320 (349)
                      ++.+++++.|+++++.
T Consensus       251 ~~~l~~l~~L~~s~n~  266 (394)
T COG4886         251 IGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hccccccceecccccc
Confidence            8999999999999987

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.10  E-value=8.3e-07  Score=79.51  Aligned_cols=166  Identities=14%  Similarity=0.097  Sum_probs=84.2

Q ss_pred             cccCCCCCCCEEeecCCCCc-c----cchhHHhcCcCCcEEeccCcCccccchh-hhc-cccchhhh--hCCCCCCeeec
Q 041418          154 SGIENLFLLRYLKLNIPSLK-S----LSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWK-MKKLRHLN--FGLSCLKSLKL  224 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~-~----lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~-L~~L~~L~--~~l~~L~~L~l  224 (349)
                      +++...++|++|+||.|.+. +    +-.-+ ..+..|+.|.|.+|.++..-.. +++ |..|....  +.-++|+++..
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll-~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~  164 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELL-SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC  164 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHH-HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence            45566778889999988665 1    22234 7788888888888877654322 111 11111111  33344555544


Q ss_pred             cCC--------------CCCCCccEEEEccC--------------CCCCCccEEEEeecCCCCCCc----ccccCCcccc
Q 041418          225 ANE--------------SKMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPM----PVLETLPLLQ  272 (349)
Q Consensus       225 ~~~--------------~~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~  272 (349)
                      ..+              ...+.|+.+.+..|              ..+++|+.|+|..|.++...-    ..+..+++|+
T Consensus       165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~  244 (382)
T KOG1909|consen  165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLR  244 (382)
T ss_pred             eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhe
Confidence            411              23344555554444              345555555555554443221    1223334444


Q ss_pred             ccc---cccc----------ccccccccceeeeeccCCCC----CCCcccCCCCCCCEEEecCCC
Q 041418          273 KAD---FWTM----------GNAAMPKLECLIINPCAYLK----KMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       273 ~L~---~~~~----------~~~~~~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      .|.   ....          -....|+|+.|.+.+|..-.    .+-..+...|.|..|++++|.
T Consensus       245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             eecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            443   0000          00236777777777765211    112234557778888887776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.5e-07  Score=82.56  Aligned_cols=143  Identities=24%  Similarity=0.219  Sum_probs=85.9

Q ss_pred             CCCEEeecCCCCcc-cchhHHhcCcCCcEEeccCcCcc-ccchhhhccccchhhh----------------hCCCCCCee
Q 041418          161 LLRYLKLNIPSLKS-LSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMKKLRHLN----------------FGLSCLKSL  222 (349)
Q Consensus       161 ~L~~L~l~~~~l~~-lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~----------------~~l~~L~~L  222 (349)
                      .|++|||++..|+. --..+++.+.+|+.|.+.++.+. .+-..|.+-.+|+.|+                ..++.|+.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            36677777766651 11233466666777777666333 3344455555555555                455666666


Q ss_pred             ecc--C---C-------CCCCCccEEEEccC-------------CCCCCccEEEEeecCCCCCCcccccCCccccccccc
Q 041418          223 KLA--N---E-------SKMPWLSKIVLAEY-------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFW  277 (349)
Q Consensus       223 ~l~--~---~-------~~~~~L~~L~l~~~-------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~  277 (349)
                      +++  +   +       .--++|..|+++|+             ..+++|..|||+.|......  .+            
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~--~~------------  331 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND--CF------------  331 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch--HH------------
Confidence            655  0   1       22356677777776             55677777777776432211  11            


Q ss_pred             ccccccccccceeeeeccCCCCCCCc---ccCCCCCCCEEEecCCC
Q 041418          278 TMGNAAMPKLECLIINPCAYLKKMPE---HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       278 ~~~~~~~~~L~~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~  320 (349)
                       ...-.|+.|++|.++.|-.  -+|.   .+...|+|.+|++.+|-
T Consensus       332 -~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  332 -QEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             -HHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence             1124678899999998853  3343   36788999999999975

>PLN03150 hypothetical protein; Provisional

Probab=97.98  E-value=1.8e-05  Score=79.45  Aligned_cols=55  Identities=20%  Similarity=0.388  Sum_probs=48.2

Q ss_pred             CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcc-ccchhhhccc
Q 041418          152 YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMK  207 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~  207 (349)
                      +|..++++++|+.|+|++|.+. .+|..+ +.+++|++|+|++|.+. .+|..+++++
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            7888999999999999999997 789888 99999999999999655 6788776544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.94  E-value=4.4e-06  Score=74.98  Aligned_cols=219  Identities=15%  Similarity=0.098  Sum_probs=121.3

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCC----CCcccchhH------HhcCcC
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIP----SLKSLSSSL------LSNLLN  185 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~----~l~~lp~~i------f~~l~~  185 (349)
                      ......+.-+.+.++.........            +-+.+.+.++|+..++++-    ...++|+.+      +...++
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~------------i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~   93 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARA------------IAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPK   93 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHH------------HHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCc
Confidence            455666777777776654111111            2234566678888888863    123566543      245678


Q ss_pred             CcEEeccCcCcc-ccchh----hhccccchhhh-----------hCC-CCCCeeeccC-CCCCCCccEEEEccC------
Q 041418          186 LYTLDMPFSYID-HTVDE----FWKMKKLRHLN-----------FGL-SCLKSLKLAN-ESKMPWLSKIVLAEY------  241 (349)
Q Consensus       186 L~~L~l~~~~l~-~lp~~----i~~L~~L~~L~-----------~~l-~~L~~L~l~~-~~~~~~L~~L~l~~~------  241 (349)
                      |++||||+|-++ .-++.    +.+.+.|++|+           +.+ ..|+.|.... -...+.|+.+..+.|      
T Consensus        94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen   94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc
Confidence            999999999333 22333    34556666665           000 0111111100 056678888887777      


Q ss_pred             --------CCCCCccEEEEeecCCCCCCc----ccccCCccccccc------------ccccccccccccceeeeeccCC
Q 041418          242 --------LFPHSLTHLSFSNTDRMDDPM----PVLETLPLLQKAD------------FWTMGNAAMPKLECLIINPCAY  297 (349)
Q Consensus       242 --------~~~~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~------------~~~~~~~~~~~L~~L~l~~c~~  297 (349)
                              ...+.|+.+.+..|.+.....    ..+..+++|+.|+            ........+++|+.|++++|. 
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-  252 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-  252 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-
Confidence                    456788888888888765443    3556778888777            011111346778888888876 


Q ss_pred             CCCCC-----cc-cCCCCCCCEEEecCCCHHHHHhh--hhcccccccccceeeecccc
Q 041418          298 LKKMP-----EH-LWCIKSLNKFDCWWPQPELRQKL--REFEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       298 l~~lp-----~~-l~~l~~L~~L~l~~~~~~~~~~l--~~~~~~i~~ip~i~~~~~~~  347 (349)
                      ++.=-     .. -...|+|+.|.+.+|....-...  .......+++-.+.+++|.+
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            33211     01 12367888888888763221111  11222244455555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=4e-05  Score=71.69  Aligned_cols=41  Identities=12%  Similarity=0.009  Sum_probs=25.9

Q ss_pred             CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc-Cccccchh
Q 041418          158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS-YIDHTVDE  202 (349)
Q Consensus       158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~-~l~~lp~~  202 (349)
                      .+.++++|++++|.++.+|. +   ..+|+.|.+++| .+..+|..
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~   91 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGS   91 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCch
Confidence            34667777777777777662 2   345777777776 66666653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.80  E-value=7.3e-06  Score=78.34  Aligned_cols=57  Identities=28%  Similarity=0.377  Sum_probs=40.1

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  213 (349)
                      .++.+++|.+|++.+|.|..+...+ ..+++|++|++++|.|+.+.. +..++.|+.|+
T Consensus        90 ~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~  146 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELN  146 (414)
T ss_pred             ccccccceeeeeccccchhhcccch-hhhhcchheeccccccccccc-hhhccchhhhe
Confidence            3667778888888888887776545 778888888888887777753 55555454444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.72  E-value=3.2e-05  Score=48.69  Aligned_cols=35  Identities=17%  Similarity=0.204  Sum_probs=30.6

Q ss_pred             cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          285 PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       285 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      ++|++|++++|. +..+|+.++++++|+.|++++|+
T Consensus         1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence            579999999987 88999889999999999999998

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=3.3e-06  Score=74.32  Aligned_cols=131  Identities=19%  Similarity=0.155  Sum_probs=84.2

Q ss_pred             CCcEEeccCcCccc--cchhhhccccchhhhhCCCCCCeeeccCC-----CCCCCccEEEEccC------------CCCC
Q 041418          185 NLYTLDMPFSYIDH--TVDEFWKMKKLRHLNFGLSCLKSLKLANE-----SKMPWLSKIVLAEY------------LFPH  245 (349)
Q Consensus       185 ~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~l~~L~~L~l~~~-----~~~~~L~~L~l~~~------------~~~~  245 (349)
                      .||+|||+...++.  +-.-++.+.+|+.|     +|+-+.+.+.     ..-.+|++|+++++            .+++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~l-----SlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNL-----SLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhc-----cccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence            48888888875543  22223444555444     3444433322     55678999999887            6789


Q ss_pred             CccEEEEeecCCCCCCcccccC--Cccccccc-----------ccccccccccccceeeeeccCCCCC-CCcccCCCCCC
Q 041418          246 SLTHLSFSNTDRMDDPMPVLET--LPLLQKAD-----------FWTMGNAAMPKLECLIINPCAYLKK-MPEHLWCIKSL  311 (349)
Q Consensus       246 ~L~~L~L~~~~l~~~~~~~l~~--l~~L~~L~-----------~~~~~~~~~~~L~~L~l~~c~~l~~-lp~~l~~l~~L  311 (349)
                      .|..|+++||.+..+.....-.  -++|+.|+           ....-....|+|..|++++|..++. .-..+.+++.|
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence            9999999999877654332211  14555555           0001113578999999999886654 12246789999


Q ss_pred             CEEEecCCC
Q 041418          312 NKFDCWWPQ  320 (349)
Q Consensus       312 ~~L~l~~~~  320 (349)
                      ++|.++.|-
T Consensus       341 ~~lSlsRCY  349 (419)
T KOG2120|consen  341 QHLSLSRCY  349 (419)
T ss_pred             eeeehhhhc
Confidence            999999986

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=0.0001  Score=74.33  Aligned_cols=108  Identities=21%  Similarity=0.146  Sum_probs=71.4

Q ss_pred             CCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc--cccc-------ccccccccc
Q 041418          229 KMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--FWTM-------GNAAMPKLE  288 (349)
Q Consensus       229 ~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--~~~~-------~~~~~~~L~  288 (349)
                      .+|+|+.|.+.|.           .++++|..||+++++++..  ..++.++||+.|.  ...+       +.-.+.+|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            3455555555553           6888999999999887643  5777888888887  1111       123578999


Q ss_pred             eeeeeccCCCCCC--Cc----ccCCCCCCCEEEecCCC--HHHHHhhhhccccccccc
Q 041418          289 CLIINPCAYLKKM--PE----HLWCIKSLNKFDCWWPQ--PELRQKLREFEDKEQQIP  338 (349)
Q Consensus       289 ~L~l~~c~~l~~l--p~----~l~~l~~L~~L~l~~~~--~~~~~~l~~~~~~i~~ip  338 (349)
                      .||+|.-.....-  ..    .-..+|+|+.||.++..  +++.+.+...+.+++.|.
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            9999975533221  11    12348999999999865  666676666666666555

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.50  E-value=4.9e-05  Score=76.60  Aligned_cols=53  Identities=26%  Similarity=0.322  Sum_probs=32.1

Q ss_pred             CCCCCEEeecCCCCc--ccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418          159 LFLLRYLKLNIPSLK--SLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       159 l~~L~~L~l~~~~l~--~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  213 (349)
                      ||.|+.|.+++-.+.  ++- .++.+++||..||+|+++++.+ .++++|++|+.|.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~-~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~  201 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFS-QLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS  201 (699)
T ss_pred             CcccceEEecCceecchhHH-HHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence            566677776664432  111 2225667777777777766666 5577777777663

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=0.00012  Score=64.66  Aligned_cols=159  Identities=16%  Similarity=0.123  Sum_probs=90.3

Q ss_pred             CCCCCCCEEeecCCCCc----ccchhHHhcCcCCcEEeccCc--CccccchhhhccccchhhhhCCCCCCeeeccCC---
Q 041418          157 ENLFLLRYLKLNIPSLK----SLSSSLLSNLLNLYTLDMPFS--YIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANE---  227 (349)
Q Consensus       157 ~~l~~L~~L~l~~~~l~----~lp~~if~~l~~L~~L~l~~~--~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~---  227 (349)
                      .+|++|++|+++.|.+.    .+|    ..+.+|++|-|.++  ..+..-..+..+++++.|.-...+++.+.+.++   
T Consensus        94 e~lP~l~~LNls~N~L~s~I~~lp----~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e  169 (418)
T KOG2982|consen   94 EQLPALTTLNLSCNSLSSDIKSLP----LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE  169 (418)
T ss_pred             hcCccceEeeccCCcCCCccccCc----ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc
Confidence            45566666666665443    232    13445666666555  223333334455555555433444444444422   


Q ss_pred             CCCCCccEEEEccC------------CCCCCccEEEEeecCCCCCC-cccccCCccccccc-------cccc--cccccc
Q 041418          228 SKMPWLSKIVLAEY------------LFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKAD-------FWTM--GNAAMP  285 (349)
Q Consensus       228 ~~~~~L~~L~l~~~------------~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~-------~~~~--~~~~~~  285 (349)
                      ..-+.++++...+|            ..++++..+-+..|.+.... -.....+|.+..|.       +|..  ....|+
T Consensus       170 ~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~  249 (418)
T KOG2982|consen  170 DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP  249 (418)
T ss_pred             ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence            33345666666666            56888888888888665422 23344445444444       4421  235688


Q ss_pred             ccceeeeeccCCCCCCCc------ccCCCCCCCEEEecCC
Q 041418          286 KLECLIINPCAYLKKMPE------HLWCIKSLNKFDCWWP  319 (349)
Q Consensus       286 ~L~~L~l~~c~~l~~lp~------~l~~l~~L~~L~l~~~  319 (349)
                      .|..|.+++++....+-.      -++.+++++.|+=+..
T Consensus       250 ~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskI  289 (418)
T KOG2982|consen  250 QLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKI  289 (418)
T ss_pred             hhheeeccCCcccccccCCcceEEEEeeccceEEecCccc
Confidence            999999998886665543      2577888888875543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.40  E-value=6.7e-06  Score=80.34  Aligned_cols=93  Identities=20%  Similarity=0.187  Sum_probs=67.6

Q ss_pred             CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEE
Q 041418          161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIV  237 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~  237 (349)
                      .|...+.+.|.++.+..++ .-++.|+.|||++|++..+- .+..+++|++|+   ..++.+-.+..   ..|. |+.|.
T Consensus       165 ~L~~a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~---~gc~-L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSM---VGCK-LQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccch---hhhh-heeee
Confidence            3666777778887777777 77888888888888777775 577788888887   34444444443   3444 88888


Q ss_pred             EccC--------CCCCCccEEEEeecCCCC
Q 041418          238 LAEY--------LFPHSLTHLSFSNTDRMD  259 (349)
Q Consensus       238 l~~~--------~~~~~L~~L~L~~~~l~~  259 (349)
                      +++|        .++.+|+.||+++|-+.+
T Consensus       239 lrnN~l~tL~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  239 LRNNALTTLRGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             ecccHHHhhhhHHhhhhhhccchhHhhhhc
Confidence            8887        678888889998887654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.32  E-value=4.5e-05  Score=72.96  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=46.8

Q ss_pred             CCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc
Q 041418          117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI  196 (349)
Q Consensus       117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l  196 (349)
                      ..+.++..+.+.++....                 +...+..+++|++|++++|.|+.+.. + ..++.|+.|++++|.+
T Consensus        92 ~~~~~l~~l~l~~n~i~~-----------------i~~~l~~~~~L~~L~ls~N~I~~i~~-l-~~l~~L~~L~l~~N~i  152 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEK-----------------IENLLSSLVNLQVLDLSFNKITKLEG-L-STLTLLKELNLSGNLI  152 (414)
T ss_pred             ccccceeeeeccccchhh-----------------cccchhhhhcchheeccccccccccc-h-hhccchhhheeccCcc
Confidence            345566666666655542                 11225667777777777777777643 3 6677777777777777


Q ss_pred             cccchhhhccccchhhh
Q 041418          197 DHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       197 ~~lp~~i~~L~~L~~L~  213 (349)
                      ..++. +..+++|+.++
T Consensus       153 ~~~~~-~~~l~~L~~l~  168 (414)
T KOG0531|consen  153 SDISG-LESLKSLKLLD  168 (414)
T ss_pred             hhccC-Cccchhhhccc
Confidence            66653 44455444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.13  E-value=0.00067  Score=56.82  Aligned_cols=100  Identities=24%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEE-Ec
Q 041418          161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIV-LA  239 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~-l~  239 (349)
                      +...+||++|.+..++.  |..++.|.+|.+.+|.|..+-+.+..+         +++|+.|.+.++    ++++|. +.
T Consensus        43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~---------~p~l~~L~LtnN----si~~l~dl~  107 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTF---------LPNLKTLILTNN----SIQELGDLD  107 (233)
T ss_pred             ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhh---------ccccceEEecCc----chhhhhhcc
Confidence            34556777776666543  366677777777777777665544321         222333322100    111110 00


Q ss_pred             cCCCCCCccEEEEeecCCCCC---CcccccCCccccccc
Q 041418          240 EYLFPHSLTHLSFSNTDRMDD---PMPVLETLPLLQKAD  275 (349)
Q Consensus       240 ~~~~~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~  275 (349)
                      ....++.|++|.+-+|..+..   -.-.+..+|+|+.|+
T Consensus       108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LD  146 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLD  146 (233)
T ss_pred             hhccCCccceeeecCCchhcccCceeEEEEecCcceEee
Confidence            114455666666666655432   234566677777777

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=96.86  E-value=0.00042  Score=64.00  Aligned_cols=113  Identities=17%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             CCCCCccEEEEccC------------CCCCCccEEEEeecCCCCCC-cccc-cCCccccccc----cccccc--------
Q 041418          228 SKMPWLSKIVLAEY------------LFPHSLTHLSFSNTDRMDDP-MPVL-ETLPLLQKAD----FWTMGN--------  281 (349)
Q Consensus       228 ~~~~~L~~L~l~~~------------~~~~~L~~L~L~~~~l~~~~-~~~l-~~l~~L~~L~----~~~~~~--------  281 (349)
                      .++++|+.+.+.+|            .+.+.|+.+++..|....+. +..+ .+++.|+.|.    +...+.        
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~  396 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSS  396 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhc
Confidence            55677777777776            55667777777776644332 2222 2456676666    111111        


Q ss_pred             -ccccccceeeeeccCCCCCCC-cccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeee
Q 041418          282 -AAMPKLECLIINPCAYLKKMP-EHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQST  343 (349)
Q Consensus       282 -~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~  343 (349)
                       .++..|+.+.+++|+.+.+-- ..+...++|+.+++.+|..-+.+.+.+   ...|+|+++++
T Consensus       397 ~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~---~~~~lp~i~v~  457 (483)
T KOG4341|consen  397 SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR---FATHLPNIKVH  457 (483)
T ss_pred             cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH---HHhhCccceeh
Confidence             346678888888888554321 235567888888888887433333322   13345555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.85  E-value=0.0005  Score=54.10  Aligned_cols=76  Identities=14%  Similarity=0.218  Sum_probs=59.0

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccC-CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIE-NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH  198 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~-~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~  198 (349)
                      .++....+.++....                 +|+.+. ..+.++.|++++|.++++|.++ ..++.|+.|+++.|.+..
T Consensus        53 ~el~~i~ls~N~fk~-----------------fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   53 YELTKISLSDNGFKK-----------------FPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             ceEEEEecccchhhh-----------------CCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCcccc
Confidence            467777888877653                 333332 3346788899999999999996 999999999999998888


Q ss_pred             cchhhhccccchhhh
Q 041418          199 TVDEFWKMKKLRHLN  213 (349)
Q Consensus       199 lp~~i~~L~~L~~L~  213 (349)
                      .|..+..|.+|-+|+
T Consensus       115 ~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen  115 EPRVIAPLIKLDMLD  129 (177)
T ss_pred             chHHHHHHHhHHHhc
Confidence            888888788777776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.001  Score=59.07  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=30.7

Q ss_pred             CCCCCEEeecCCCCcccch--hHHhcCcCCcEEeccCcCcc
Q 041418          159 LFLLRYLKLNIPSLKSLSS--SLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~--~if~~l~~L~~L~l~~~~l~  197 (349)
                      .+.++.+||.+|.|+...+  .|+.+|+.|++|+++.|.+.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~  110 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS  110 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence            4678999999999985432  34478999999999999554

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.66  E-value=0.0048  Score=58.00  Aligned_cols=124  Identities=17%  Similarity=0.175  Sum_probs=76.9

Q ss_pred             hcCcCCcEEeccCcCccccchhhhccccchhhh-hCCCCCCeeeccCCCCCCCccEEEEccC----CCCCCccEEEEeec
Q 041418          181 SNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-FGLSCLKSLKLANESKMPWLSKIVLAEY----LFPHSLTHLSFSNT  255 (349)
Q Consensus       181 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~~L~~L~l~~~----~~~~~L~~L~L~~~  255 (349)
                      ..+.++..|++++|.++.+|. +  -.+|+.|. .++.+|..+.-   .-+++|+.|.+++|    ..+.+|+.|++..+
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~---~LP~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n  122 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPG---SIPEGLEKLTVCHCPEISGLPESVRSLEIKGS  122 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCc---hhhhhhhheEccCcccccccccccceEEeCCC
Confidence            457899999999999999983 2  12455555 44455544431   12457788888776    44567888888765


Q ss_pred             CCCCCCcccccCC-cccccccc--------cccccccc-cccceeeeeccCCCCCCCcccCCCCCCCEEEecCC
Q 041418          256 DRMDDPMPVLETL-PLLQKADF--------WTMGNAAM-PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWP  319 (349)
Q Consensus       256 ~l~~~~~~~l~~l-~~L~~L~~--------~~~~~~~~-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  319 (349)
                      ...     .+..+ ++|+.|.-        +... ..+ ++|+.|++++|..+ .+|..+.  .+|+.|+++.+
T Consensus       123 ~~~-----~L~~LPssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        123 ATD-----SIKNVPNGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CCc-----ccccCcchHhheeccccccccccccc-cccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            432     22333 24555541        1001 123 57999999999844 4565443  58999998765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.00017  Score=63.24  Aligned_cols=38  Identities=26%  Similarity=0.349  Sum_probs=17.0

Q ss_pred             CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418          158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      +|+.|.+|.||-|+|+.+-+  |..+++|+.|+|+.|.|.
T Consensus        39 kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             hcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc
Confidence            34444444444444444422  244444444444444433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.56  E-value=0.0037  Score=52.49  Aligned_cols=80  Identities=25%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCc
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWL  233 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L  233 (349)
                      ..+..++.|.+|.+++|.|+.+.+.+-..+++|.+|.+.+|++.++-+ +..|                     ..||.|
T Consensus        58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pL---------------------a~~p~L  115 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPL---------------------ASCPKL  115 (233)
T ss_pred             ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchh---------------------ccCCcc
Confidence            346678899999999999999988873457789999999998776532 1111                     345555


Q ss_pred             cEEEEccC-------------CCCCCccEEEEeec
Q 041418          234 SKIVLAEY-------------LFPHSLTHLSFSNT  255 (349)
Q Consensus       234 ~~L~l~~~-------------~~~~~L~~L~L~~~  255 (349)
                      ++|.+-||             ..+++|+.||...-
T Consensus       116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            55555555             45777787777653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.56  E-value=0.00092  Score=35.17  Aligned_cols=17  Identities=47%  Similarity=0.608  Sum_probs=8.3

Q ss_pred             CCEEeecCCCCcccchh
Q 041418          162 LRYLKLNIPSLKSLSSS  178 (349)
Q Consensus       162 L~~L~l~~~~l~~lp~~  178 (349)
                      |++|++++|+++.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44455555544444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.50  E-value=5.5e-05  Score=74.20  Aligned_cols=48  Identities=21%  Similarity=0.335  Sum_probs=40.7

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD  201 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~  201 (349)
                      +-.++.-++.|+.|+|++|+++..- .+ ..+++|++|||+.|.+..+|.
T Consensus       179 mD~SLqll~ale~LnLshNk~~~v~-~L-r~l~~LkhLDlsyN~L~~vp~  226 (1096)
T KOG1859|consen  179 MDESLQLLPALESLNLSHNKFTKVD-NL-RRLPKLKHLDLSYNCLRHVPQ  226 (1096)
T ss_pred             HHHHHHHHHHhhhhccchhhhhhhH-HH-Hhcccccccccccchhccccc
Confidence            4456777889999999999998875 56 899999999999998888875

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.34  E-value=0.0011  Score=34.83  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=18.6

Q ss_pred             CCcEEeccCcCccccchhhhcc
Q 041418          185 NLYTLDMPFSYIDHTVDEFWKM  206 (349)
Q Consensus       185 ~L~~L~l~~~~l~~lp~~i~~L  206 (349)
                      +|++||+++|.++.+|+++++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999987653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.15  E-value=0.0042  Score=54.55  Aligned_cols=48  Identities=10%  Similarity=0.065  Sum_probs=36.1

Q ss_pred             CCcccCCCCCCCEEeecCCCCc-ccch----hHHhcCcCCcEEeccCcCccccc
Q 041418          152 YPSGIENLFLLRYLKLNIPSLK-SLSS----SLLSNLLNLYTLDMPFSYIDHTV  200 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~-~lp~----~if~~l~~L~~L~l~~~~l~~lp  200 (349)
                      +.+.+-++++|+..+||.|.+. +.|+    -| ++-++|.+|.+++|.++.+.
T Consensus        84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~i-s~~t~l~HL~l~NnGlGp~a  136 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLI-SSSTDLVHLKLNNNGLGPIA  136 (388)
T ss_pred             HHHHHhcCCcceeeeccccccCcccchHHHHHH-hcCCCceeEEeecCCCCccc
Confidence            3456778899999999998765 3443    34 77888999999999777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.84  E-value=0.004  Score=57.70  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=57.0

Q ss_pred             CCCCccEEEEccC------------CCCCCccEEEEeecC-CCCCCccccc-CCccccccc----------ccccccccc
Q 041418          229 KMPWLSKIVLAEY------------LFPHSLTHLSFSNTD-RMDDPMPVLE-TLPLLQKAD----------FWTMGNAAM  284 (349)
Q Consensus       229 ~~~~L~~L~l~~~------------~~~~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~----------~~~~~~~~~  284 (349)
                      .+..|+.|..+++            .+..+|+.|.+..|+ ++......++ +.+.|+.++          +...-....
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            3555666665555            566778888887775 3332233332 346666666          111112356


Q ss_pred             cccceeeeeccCCCCCC-----CcccCCCCCCCEEEecCCC
Q 041418          285 PKLECLIINPCAYLKKM-----PEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       285 ~~L~~L~l~~c~~l~~l-----p~~l~~l~~L~~L~l~~~~  320 (349)
                      +.|+.+.++.|..+..-     ..+-..+..|+.+.+++||
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p  412 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCP  412 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCC
Confidence            88999999988755443     3333456779999999999

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.51  E-value=0.012  Score=32.16  Aligned_cols=22  Identities=36%  Similarity=0.326  Sum_probs=14.6

Q ss_pred             CCCCCEEeecCCCCcccchhHH
Q 041418          159 LFLLRYLKLNIPSLKSLSSSLL  180 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~~if  180 (349)
                      |++|++|++++|.++.+|..+|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.51  E-value=0.012  Score=32.16  Aligned_cols=22  Identities=36%  Similarity=0.326  Sum_probs=14.6

Q ss_pred             CCCCCEEeecCCCCcccchhHH
Q 041418          159 LFLLRYLKLNIPSLKSLSSSLL  180 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~~if  180 (349)
                      |++|++|++++|.++.+|..+|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3566777777777777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.48  E-value=0.0094  Score=29.10  Aligned_cols=16  Identities=44%  Similarity=0.418  Sum_probs=6.4

Q ss_pred             CCCEEeecCCCCcccc
Q 041418          161 LLRYLKLNIPSLKSLS  176 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp  176 (349)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555444

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.22  E-value=0.012  Score=28.70  Aligned_cols=17  Identities=29%  Similarity=0.268  Sum_probs=11.6

Q ss_pred             cCCcEEeccCcCccccc
Q 041418          184 LNLYTLDMPFSYIDHTV  200 (349)
Q Consensus       184 ~~L~~L~l~~~~l~~lp  200 (349)
                      ++|+.|++++|.++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            47999999999988887

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.20  E-value=0.0062  Score=48.10  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=45.7

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhh
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHL  212 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L  212 (349)
                      .+....+|+..++++|.+..+|+.+-.+.+.+++|++++|.+.++|.++..++.|+.|
T Consensus        48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL  105 (177)
T ss_pred             HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence            3455667888999999999999887345668999999999999999987655544444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.85  E-value=0.0043  Score=54.64  Aligned_cols=52  Identities=17%  Similarity=0.137  Sum_probs=32.5

Q ss_pred             CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418          159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  213 (349)
                      +.+.+.|+..||.++.+.- . .+++.|++|.|+-|.++.+-+ +..+++|+.|+
T Consensus        18 l~~vkKLNcwg~~L~DIsi-c-~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElY   69 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI-C-EKMPLLEVLSLSVNKISSLAP-LQRCTRLKELY   69 (388)
T ss_pred             HHHhhhhcccCCCccHHHH-H-HhcccceeEEeeccccccchh-HHHHHHHHHHH
Confidence            4455666666666665521 2 467777777777777766643 66666666666

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.30  E-value=0.03  Score=48.87  Aligned_cols=42  Identities=21%  Similarity=0.180  Sum_probs=32.6

Q ss_pred             cCCCCCCCEEeecCC--CCc-ccchhHHhcCcCCcEEeccCcCccc
Q 041418          156 IENLFLLRYLKLNIP--SLK-SLSSSLLSNLLNLYTLDMPFSYIDH  198 (349)
Q Consensus       156 i~~l~~L~~L~l~~~--~l~-~lp~~if~~l~~L~~L~l~~~~l~~  198 (349)
                      +-.|++|++|+++.|  .+. .++..+ .++++|++|++++|.+..
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCcccc
Confidence            445778999999998  554 566555 677999999999997664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.95  E-value=0.067  Score=47.21  Aligned_cols=38  Identities=13%  Similarity=0.018  Sum_probs=25.9

Q ss_pred             cccccceeeeeccCCCCC----CCcccCCCCCCCEEEecCCC
Q 041418          283 AMPKLECLIINPCAYLKK----MPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       283 ~~~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~~~  320 (349)
                      ...+|+.|++.+|.....    +...+...+.|++|.+.+|=
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            357899999999873221    11234556779999999984

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.92  E-value=0.033  Score=48.66  Aligned_cols=61  Identities=20%  Similarity=0.255  Sum_probs=30.3

Q ss_pred             CCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc----ccCCCCCCCEEEecC
Q 041418          243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE----HLWCIKSLNKFDCWW  318 (349)
Q Consensus       243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~  318 (349)
                      ..++|++|++++|.+..  +..+..+             ..+.+|..|++.+|.-.. +-.    -+..+++|++|+-.+
T Consensus        89 ~~P~l~~l~ls~Nki~~--lstl~pl-------------~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKD--LSTLRPL-------------KELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hCCceeEEeecCCcccc--ccccchh-------------hhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccc
Confidence            34777777777777542  2222221             234455556666655222 221    134456666665554


Q ss_pred             C
Q 041418          319 P  319 (349)
Q Consensus       319 ~  319 (349)
                      +
T Consensus       153 v  153 (260)
T KOG2739|consen  153 V  153 (260)
T ss_pred             c
Confidence            3

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.82  E-value=0.085  Score=41.09  Aligned_cols=44  Identities=18%  Similarity=0.260  Sum_probs=18.9

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD  201 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~  201 (349)
                      |.+.++|+.+.+.. .+..++...|..+.+|+.+.+.++ +..++.
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~   51 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD   51 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce
Confidence            44555566666653 355555555556656666666553 444433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.51  E-value=0.07  Score=29.03  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.3

Q ss_pred             CcCCcEEeccCcCccccchhhh
Q 041418          183 LLNLYTLDMPFSYIDHTVDEFW  204 (349)
Q Consensus       183 l~~L~~L~l~~~~l~~lp~~i~  204 (349)
                      +++|++|++++|.++.+|.+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            5789999999999999998753

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.51  E-value=0.07  Score=29.03  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.3

Q ss_pred             CcCCcEEeccCcCccccchhhh
Q 041418          183 LLNLYTLDMPFSYIDHTVDEFW  204 (349)
Q Consensus       183 l~~L~~L~l~~~~l~~lp~~i~  204 (349)
                      +++|++|++++|.++.+|.+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            5789999999999999998753

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.51  E-value=0.02  Score=48.11  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=32.4

Q ss_pred             ccccccceeeeeccCCCCCCC-cccCCCCCCCEEEecCCC
Q 041418          282 AAMPKLECLIINPCAYLKKMP-EHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       282 ~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~  320 (349)
                      +..++|+.|++++|+.+++-- .++..+++|+.|.+.+.|
T Consensus       148 ~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~  187 (221)
T KOG3864|consen  148 GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP  187 (221)
T ss_pred             ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence            357999999999999887653 257889999999999977

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.14  E-value=0.096  Score=50.65  Aligned_cols=35  Identities=26%  Similarity=0.168  Sum_probs=21.6

Q ss_pred             CCCCCEEeecCC-CCcc--cchhHHhcCcCCcEEeccCc
Q 041418          159 LFLLRYLKLNIP-SLKS--LSSSLLSNLLNLYTLDMPFS  194 (349)
Q Consensus       159 l~~L~~L~l~~~-~l~~--lp~~if~~l~~L~~L~l~~~  194 (349)
                      .+.|+.|.+.++ .+..  +-... ...++|+.|++++|
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~  224 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGC  224 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHH-hhCchhheecccCc
Confidence            566777777765 4443  32333 66777888887763

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.17  E-value=0.45  Score=36.92  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=17.6

Q ss_pred             ccchhHHhcCcCCcEEeccCcCccccchh-hhccccch
Q 041418          174 SLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLR  210 (349)
Q Consensus       174 ~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~  210 (349)
                      .+|+..|.+..+|+.+.+.. .+..++.. +...++|+
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~   38 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLK   38 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-S
T ss_pred             EECHHHHhCCCCCCEEEECC-CeeEeChhhcccccccc
Confidence            46667778899999999875 46666554 33333333

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.77  E-value=0.67  Score=25.26  Aligned_cols=17  Identities=29%  Similarity=0.331  Sum_probs=10.4

Q ss_pred             CCCEEeecCCCCcccch
Q 041418          161 LLRYLKLNIPSLKSLSS  177 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~  177 (349)
                      +|++|+.++|+++++|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            45666666666666664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	349
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-10
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 9/72 (12%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANK 77
              +K  +   S+    +++ T+ +  LW  E           +  L++ +N+  +  ++
Sbjct: 376 REDIKDYYTDLSILQKDVKVPTKVLCILWDMETEE-------VEDILQEFVNKSLLFCDR 428

Query: 78  RRAGGTINTCSI 89
               G      +
Sbjct: 429 N---GKSFRYYL 437

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 18  PFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNN--EATAKKYLEQLINRGFVEA 75
               +    +  V P  ++I  +    +   +    +    +      L++L  RG + +
Sbjct: 386 SDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLS 445

Query: 76  NKRRAGGTINTCSI 89
            KR     + T  I
Sbjct: 446 GKR---MPVLTFKI 456

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 41/225 (18%), Positives = 70/225 (31%), Gaps = 69/225 (30%)

Query: 1   KVLTMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATA 60
            ++  SL        + P   +  F   SVFP    I T  +  +W       D  ++  
Sbjct: 357 TIIESSLN------VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW------FDVIKSDV 404

Query: 61  KKYLEQLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVE--------FI----- 107
              + +L     VE   +      +T SIP     + L +  K+E         +     
Sbjct: 405 MVVVNKLHKYSLVEKQPKE-----STISIPS----IYLELKVKLENEYALHRSIVDHYNI 455

Query: 108 --------FSPFMDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENL 159
                     P     D Y    +S +       H+  I+  +   +F           +
Sbjct: 456 PKTFDSDDLIP--PYLDQY---FYSHI-----GHHLKNIEHPERMTLF---------RMV 496

Query: 160 FL-LRYL--KLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD 201
           FL  R+L  K+   S    +S  + N L      + F Y  +  D
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQ----QLKF-YKPYICD 536

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 39/259 (15%), Positives = 76/259 (29%), Gaps = 80/259 (30%)

Query: 111 FMDIEDDYDSQLHSFLCCSPESRHI--DPIDWEKICGMF-KLLRYPSGIENLFLLRYLKL 167
             D++D   S L        E  HI            +F  LL     +   F+   L++
Sbjct: 35  CKDVQDMPKSILSK-----EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 168 NIPSL----------KSLSSSLLSNLLN-LYTLDMPFSYIDHTVDEFWKMKKLRHLNFGL 216
           N   L           S+ + +     + LY  +  F+   + V       KLR      
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA--KYNVSRLQPYLKLR------ 141

Query: 217 SCLKSLKLANESKMPWLS--------KIVLA---------EYLFPHSLTHLSFSNTDRMD 259
             L  L+         +         K  +A         +      +  L+  N +  +
Sbjct: 142 QALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 260 DPMPVLETL------PLLQKADFWTMG----NAAMPKL----------ECLIINPCAYLK 299
             + +L+ L          ++D  +      ++   +L           CL++     L 
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----L- 250

Query: 300 KMPEHLWCIKSLNKFD--C 316
               ++   K+ N F+  C
Sbjct: 251 ---LNVQNAKAWNAFNLSC 266

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 153 PSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRH 211
                 L  L  L++   SL++  S  L ++ +++ L +  S     ++     +  +R+
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 212 LNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLL 271
           L    + L   + +        S +          LT  SF+   ++   +  L  +   
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKK-LAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 5/104 (4%)

Query: 153 PSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRH 211
               ++   L  L L    L  ++ + LS    L  L    + I           K L  
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 212 LNFGLSCLKSLKLANESKMPWLSKIVLA----EYLFPHSLTHLS 251
           L  G + + S+KL        L  +        YL    ++ L 
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	349
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.79
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.75
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.73
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.73
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.73
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.71
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.71
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.7
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.7
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.68
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.66
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.66
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.65
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.65
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.65
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.64
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.64
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.63
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.63
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.62
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.6
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.59
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.58
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.56
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.55
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.55
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.54
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.52
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.52
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.51
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.51
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.49
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.49
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.48
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.47
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.46
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.42
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.4
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.39
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.39
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.39
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.37
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.36
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.36
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.32
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.31
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.27
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.25
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.22
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.2
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.2
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.19
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.19
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.19
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.16
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.15
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.13
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.05
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.02
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.01
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.0
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.99
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.95
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.88
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.85
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.84
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.84
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.83
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.82
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.66
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.42
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.37
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.2
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.14
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.78
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.57
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.1
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.96
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.04
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.39
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.24
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.87

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=4.3e-20  Score=169.50  Aligned_cols=183  Identities=19%  Similarity=0.198  Sum_probs=121.7

Q ss_pred             CCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc
Q 041418          119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH  198 (349)
Q Consensus       119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~  198 (349)
                      ..+++.|.+.++....                 +|..++++++|++|++++|.++.+|..+ +++++|++|++++|.++.
T Consensus        80 ~~~l~~L~L~~n~l~~-----------------lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~  141 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQ-----------------FPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRA  141 (328)
T ss_dssp             STTCCEEEEESSCCSS-----------------CCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCC
T ss_pred             ccceeEEEccCCCchh-----------------cChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCcccc
Confidence            4678888888776642                 6677777888888888888888888777 888888888888887778


Q ss_pred             cchhhhccccchhhh-hCCCCCCeeecc-------CC-CCCCCccEEEEccC---------CCCCCccEEEEeecCCCCC
Q 041418          199 TVDEFWKMKKLRHLN-FGLSCLKSLKLA-------NE-SKMPWLSKIVLAEY---------LFPHSLTHLSFSNTDRMDD  260 (349)
Q Consensus       199 lp~~i~~L~~L~~L~-~~l~~L~~L~l~-------~~-~~~~~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~  260 (349)
                      +|..++++++|++|+ .....+..+.-.       +. ..+++|+.|++++|         ..+++|+.|++++|.+.+.
T Consensus       142 lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l  221 (328)
T 4fcg_A          142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL  221 (328)
T ss_dssp             CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred             CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC
Confidence            888787777777776 111111111000       00 22556666666665         4466777777777777654


Q ss_pred             CcccccCCccccccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          261 PMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       261 ~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      + +.++.+++|+.|+        ..+...+.+++|+.|++++|...+.+|..++.+++|++|++++|+
T Consensus       222 ~-~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          222 G-PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             C-GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred             c-hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence            4 3566677777766        222223456777777777777777777777777777777777776

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=1.8e-19  Score=169.04  Aligned_cols=167  Identities=18%  Similarity=0.149  Sum_probs=87.3

Q ss_pred             CcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh-----------hCCCCCC
Q 041418          153 PSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN-----------FGLSCLK  220 (349)
Q Consensus       153 p~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~-----------~~l~~L~  220 (349)
                      |..++++++|++|++++|.++.+|..+|+++++|++|++++|.+..+++ .++.+++|++|+           +.+++|+
T Consensus       110 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~  189 (390)
T 3o6n_A          110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF  189 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCS
T ss_pred             HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccc
Confidence            3446666667777776666666666655666667777776666655533 356666666665           3344555


Q ss_pred             eeeccCC-----CCCC---------------------CccEEEEccC--------CCCCCccEEEEeecCCCCCCccccc
Q 041418          221 SLKLANE-----SKMP---------------------WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLE  266 (349)
Q Consensus       221 ~L~l~~~-----~~~~---------------------~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~  266 (349)
                      .|+++++     ...+                     +|+.|++++|        ..+++|+.|++++|.+.+..+..+.
T Consensus       190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             eeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            5544311     1122                     3444444433        2344555555555555444444555


Q ss_pred             CCccccccc-------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          267 TLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       267 ~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      .+++|+.|+       .++...+.+++|+.|++++|. +..+|..++.+++|+.|++++|+
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred             ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence            555555554       111112334555555555553 44555444445555555555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=4.7e-19  Score=175.42  Aligned_cols=197  Identities=16%  Similarity=0.090  Sum_probs=108.4

Q ss_pred             CCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418          119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNL  186 (349)
Q Consensus       119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L  186 (349)
                      +++++.|.+.++....    ..+..+..+..|+            .|..++++++|++|++++|.++.+|..+|+++++|
T Consensus        74 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           74 FRQVELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             CCCCSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            4566666666655432    1112233333333            33456777777777777777777777655777777


Q ss_pred             cEEeccCcCccccch-hhhccccchhhh-----------hCCCCCCeeeccCC-----CCCC------------------
Q 041418          187 YTLDMPFSYIDHTVD-EFWKMKKLRHLN-----------FGLSCLKSLKLANE-----SKMP------------------  231 (349)
Q Consensus       187 ~~L~l~~~~l~~lp~-~i~~L~~L~~L~-----------~~l~~L~~L~l~~~-----~~~~------------------  231 (349)
                      ++|++++|.+..+|+ .++++++|++|+           +.+++|+.|+++++     ..++                  
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~  229 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP  229 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc
Confidence            777777776666543 466777777776           34455555554411     1222                  


Q ss_pred             ---CccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeee
Q 041418          232 ---WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIIN  293 (349)
Q Consensus       232 ---~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~  293 (349)
                         +|+.|++++|        ..+++|+.|++++|.+.+.++..++.+++|+.|+       .++...+.+++|+.|+++
T Consensus       230 ~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          230 VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECC
T ss_pred             cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECC
Confidence               3444444444        3345555566665555555445555555555555       222222335556666666


Q ss_pred             ccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          294 PCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       294 ~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      +|. +..+|..++.+++|+.|++++|+
T Consensus       310 ~N~-l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          310 HNH-LLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             SSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred             CCC-CCccCcccccCCCCCEEECCCCC
Confidence            554 44555555555555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.78  E-value=7.8e-19  Score=164.73  Aligned_cols=201  Identities=17%  Similarity=0.115  Sum_probs=151.8

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc---------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR---------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNL  186 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L  186 (349)
                      ....+++|.+.+.++.....+...+ ..+.+++.|.         .|..++.+++|++|++++|.++.+|+..|+++++|
T Consensus        41 ~~~l~~l~~l~l~~~~l~~l~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             SGGGCCCSEEEEESCEESEECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccccCCceEEEecCCchhhCChhHh-cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            3456788999988876643222111 2234444444         34589999999999999999999887755999999


Q ss_pred             cEEeccCcCccccchhh-hccccchhhh--------------hCCCCCCeeeccCC-------CCCCCccEEEEccC---
Q 041418          187 YTLDMPFSYIDHTVDEF-WKMKKLRHLN--------------FGLSCLKSLKLANE-------SKMPWLSKIVLAEY---  241 (349)
Q Consensus       187 ~~L~l~~~~l~~lp~~i-~~L~~L~~L~--------------~~l~~L~~L~l~~~-------~~~~~L~~L~l~~~---  241 (349)
                      ++|++++|.++.+|..+ +++++|++|+              +.+++|+.|+++++       ..+++|+.|+++++   
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc
Confidence            99999999999999875 8899999998              56788999988732       56788888888776   


Q ss_pred             --C---------------------CCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-cccccccccccee
Q 041418          242 --L---------------------FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECL  290 (349)
Q Consensus       242 --~---------------------~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L  290 (349)
                        .                     ..++|+.|++++|.+++.  +.++.+++|+.|+       .. +...+.+++|+.|
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence              1                     233566666666666543  5677888888888       11 2223567899999


Q ss_pred             eeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          291 IINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       291 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      ++++|. +..+|..++.+++|++|++++|.
T Consensus       278 ~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~  306 (390)
T 3o6n_A          278 YISNNR-LVALNLYGQPIPTLKVLDLSHNH  306 (390)
T ss_dssp             ECCSSC-CCEEECSSSCCTTCCEEECCSSC
T ss_pred             ECCCCc-CcccCcccCCCCCCCEEECCCCc
Confidence            999987 88888878889999999999987

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=1.9e-18  Score=171.06  Aligned_cols=201  Identities=17%  Similarity=0.116  Sum_probs=153.1

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc---------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR---------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNL  186 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L  186 (349)
                      ...+++++.+.+.++.....+...+ ..+.+++.|.         .|..|+.+++|++|++++|.++.+|+..|+++++|
T Consensus        47 ~l~l~~l~~l~l~~~~l~~lp~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  125 (597)
T 3oja_B           47 DITLNNQKIVTFKNSTMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  125 (597)
T ss_dssp             SGGGCCCSEEEESSCEESEECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccCCCceEEEeeCCCCCCcCHHHH-ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence            3456788999888776643222211 2234455544         45689999999999999999999988777999999


Q ss_pred             cEEeccCcCccccchhh-hccccchhhh--------------hCCCCCCeeeccCC-------CCCCCccEEEEccC---
Q 041418          187 YTLDMPFSYIDHTVDEF-WKMKKLRHLN--------------FGLSCLKSLKLANE-------SKMPWLSKIVLAEY---  241 (349)
Q Consensus       187 ~~L~l~~~~l~~lp~~i-~~L~~L~~L~--------------~~l~~L~~L~l~~~-------~~~~~L~~L~l~~~---  241 (349)
                      ++|++++|.++.+|..+ +++++|++|+              +.+++|+.|+++++       ..+++|+.|++++|   
T Consensus       126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCS
T ss_pred             CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccc
Confidence            99999999999998875 8999999998              56788999998732       56788999888876   


Q ss_pred             --CC---------------------CCCccEEEEeecCCCCCCcccccCCccccccc-------cc-cccccccccccee
Q 041418          242 --LF---------------------PHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECL  290 (349)
Q Consensus       242 --~~---------------------~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L  290 (349)
                        ..                     .++|+.|++++|.+++  ++.++.+++|+.|+       .. +...+.+++|+.|
T Consensus       206 ~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             EEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             cccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence              22                     2356666666666654  25678888888888       11 2233568899999


Q ss_pred             eeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          291 IINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       291 ~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      ++++|. +..+|..++.+++|+.|++++|+
T Consensus       284 ~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          284 YISNNR-LVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             ECTTSC-CCEEECSSSCCTTCCEEECCSSC
T ss_pred             ECCCCC-CCCCCcccccCCCCcEEECCCCC
Confidence            999987 88888888889999999999987

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.76  E-value=5.2e-18  Score=163.26  Aligned_cols=188  Identities=16%  Similarity=0.129  Sum_probs=94.0

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc-chhhhccccchhhh--------------hCCCCCC
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLN--------------FGLSCLK  220 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~--------------~~l~~L~  220 (349)
                      ++++++|++|++++|.++.+++..|.++++|++|++++|.+..+ |..+..+++|++|+              ..+++|+
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  179 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI  179 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred             ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence            34444444444444444443332224444444444444444333 22344444444444              3344555


Q ss_pred             eeeccCC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-----
Q 041418          221 SLKLANE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-----  275 (349)
Q Consensus       221 ~L~l~~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-----  275 (349)
                      .|++.+.          ..+++|+.|+++++          ....+|+.|++++|.++..+...+..+++|+.|+     
T Consensus       180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence            5554411          34556666666654          1223677777777777766656677777777776     


Q ss_pred             --ccc-cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeeccc
Q 041418          276 --FWT-MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEM  346 (349)
Q Consensus       276 --~~~-~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~  346 (349)
                        .+. .....+++|+.|++++|......|..+..+++|+.|++++|.   +..+.. .+.....+..+.+.+|.
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ---LTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC---CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc---CceeCHhHcCCCcccCEEEccCCC
Confidence              111 011345666666666665322234456666666666666664   112222 23334444455555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=1.6e-18  Score=158.03  Aligned_cols=217  Identities=13%  Similarity=0.135  Sum_probs=136.2

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc-------------CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcC
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------------YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLN  185 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------------lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~  185 (349)
                      .+++.+.+.++....  ...++..+.+++.|+             +|..++++++|++|++++|.++ .+|..+ +++++
T Consensus        50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTT
T ss_pred             ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCC
Confidence            578888888776642  001112223333222             5566666667777777766666 556555 66677


Q ss_pred             CcEEeccCcCcc-ccchhhhccccchhhhhCCCCCC-ee--eccCCCCCC-CccEEEEccC----------CCCCCccEE
Q 041418          186 LYTLDMPFSYID-HTVDEFWKMKKLRHLNFGLSCLK-SL--KLANESKMP-WLSKIVLAEY----------LFPHSLTHL  250 (349)
Q Consensus       186 L~~L~l~~~~l~-~lp~~i~~L~~L~~L~~~l~~L~-~L--~l~~~~~~~-~L~~L~l~~~----------~~~~~L~~L  250 (349)
                      |++|++++|.+. .+|..++.+++|++|+-.-..+. .+  .+   ..++ +|+.|++++|          ..++ |+.|
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l---~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY---GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG---GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH---hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence            777777666554 55666666665555541111111 00  01   3444 7888888777          3344 8899


Q ss_pred             EEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHH
Q 041418          251 SFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPEL  323 (349)
Q Consensus       251 ~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~  323 (349)
                      ++++|.+.+..+..++.+++|+.|+       ........+++|+.|++++|...+.+|..+..+++|++|++++|+   
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~---  279 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN---  279 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE---
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc---
Confidence            9999988877778888888888888       122223567889999999988555889889999999999999987   


Q ss_pred             HHhhhhcccccccccceeeeccc
Q 041418          324 RQKLREFEDKEQQIPNRQSTGEM  346 (349)
Q Consensus       324 ~~~l~~~~~~i~~ip~i~~~~~~  346 (349)
                      +....+....+..+..+.+.+|.
T Consensus       280 l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          280 LCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             EEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccccCCCCccccccChHHhcCCC
Confidence            11111233445555556666553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.76  E-value=2.5e-18  Score=157.68  Aligned_cols=183  Identities=15%  Similarity=0.163  Sum_probs=145.7

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc-
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS-  194 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~-  194 (349)
                      ...+++++.|.+.++....                 +|..++++++|++|++++|.++.+|..+ +++++|++|++++| 
T Consensus       100 l~~l~~L~~L~L~~n~l~~-----------------lp~~~~~l~~L~~L~Ls~n~l~~lp~~l-~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLME-----------------LPDTMQQFAGLETLTLARNPLRALPASI-ASLNRLRELSIRACP  161 (328)
T ss_dssp             GGGGTTCSEEEEESSCCCC-----------------CCSCGGGGTTCSEEEEESCCCCCCCGGG-GGCTTCCEEEEEEET
T ss_pred             hhhCCCCCEEECCCCCccc-----------------hhHHHhccCCCCEEECCCCccccCcHHH-hcCcCCCEEECCCCC
Confidence            3447889999998876642                 7788889999999999999999999888 99999999999997 


Q ss_pred             Cccccchhhhc---------cccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC---------CCCCCccEEEEe
Q 041418          195 YIDHTVDEFWK---------MKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY---------LFPHSLTHLSFS  253 (349)
Q Consensus       195 ~l~~lp~~i~~---------L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~---------~~~~~L~~L~L~  253 (349)
                      .++.+|..++.         +++|++|+   ..++.+.. .+   ..+++|+.|++++|         ..+++|+.|+++
T Consensus       162 ~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~l---~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls  237 (328)
T 4fcg_A          162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA-SI---ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR  237 (328)
T ss_dssp             TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG-GG---GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred             CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH-hh---cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence            78888887764         66666665   11221110 11   56778888888887         567899999999


Q ss_pred             ecCCCCCCcccccCCccccccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          254 NTDRMDDPMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       254 ~~~l~~~~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      +|.+.+..+..++.+++|+.|+        .++...+.+++|+.|++++|+.++.+|.+++++++|+.+.+..+.
T Consensus       238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            9998888778888999999888        333344678999999999999999999999999999999987543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.75  E-value=1.9e-18  Score=175.92  Aligned_cols=194  Identities=14%  Similarity=0.091  Sum_probs=130.2

Q ss_pred             CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcc-ccchhhhccc-cchhhh--------------h
Q 041418          152 YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMK-KLRHLN--------------F  214 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~--------------~  214 (349)
                      +|..++++++|++|++++|.++ .+|...|+++++|++|++++|.+. .+|..+++++ +|++|+              .
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~  389 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC  389 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence            5666777777777777777776 677663377777777777777554 6677777666 677766              1


Q ss_pred             C--CCCCCeeeccCC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCcccc
Q 041418          215 G--LSCLKSLKLANE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQ  272 (349)
Q Consensus       215 ~--l~~L~~L~l~~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~  272 (349)
                      .  +++|+.|++++.          ..+++|+.|++++|          ..+++|+.|++++|.+.+..+..++.+++|+
T Consensus       390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence            1  566777777622          45677777777776          4567788888888877777767777777777


Q ss_pred             ccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeec
Q 041418          273 KAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTG  344 (349)
Q Consensus       273 ~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~  344 (349)
                      .|+        ..+...+.+++|+.|++++|...+.+|.+++.+++|++|++++|.  +...+...+.....+..+.+.+
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS--FSGNIPAELGDCRSLIWLDLNT  547 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CEEECCGGGGGCTTCCEEECCS
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc--ccCcCCHHHcCCCCCCEEECCC
Confidence            777        122233567788888888887666788888888888888888876  1112222444555555566655


Q ss_pred             ccc
Q 041418          345 EMM  347 (349)
Q Consensus       345 ~~~  347 (349)
                      |.+
T Consensus       548 N~l  550 (768)
T 3rgz_A          548 NLF  550 (768)
T ss_dssp             SEE
T ss_pred             Ccc
Confidence            543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=1.1e-17  Score=153.34  Aligned_cols=183  Identities=22%  Similarity=0.160  Sum_probs=100.0

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      +.++.|.+.++......    ...+.++..|+            .|..++++++|++|++++|.++.+|..+ .  ++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~--~~L~  124 (330)
T 1xku_A           52 PDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM-P--KTLQ  124 (330)
T ss_dssp             TTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-C--TTCC
T ss_pred             CCCeEEECCCCcCCEeC----hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh-c--cccc
Confidence            56777777776654321    11223333332            2555666666666666666666666544 2  5666


Q ss_pred             EEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCC------------CCCCCccEEEEccC-------CCCCCc
Q 041418          188 TLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANE------------SKMPWLSKIVLAEY-------LFPHSL  247 (349)
Q Consensus       188 ~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~------------~~~~~L~~L~l~~~-------~~~~~L  247 (349)
                      +|++++|.++.+|.. +.++++|++|+          ++++            ..+++|+.|++++|       ...++|
T Consensus       125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~----------l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L  194 (330)
T 1xku_A          125 ELRVHENEITKVRKSVFNGLNQMIVVE----------LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL  194 (330)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEE----------CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTC
T ss_pred             EEECCCCcccccCHhHhcCCccccEEE----------CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccC
Confidence            666666655555432 45555555554          3310            33556666666555       223566


Q ss_pred             cEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCC
Q 041418          248 THLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWP  319 (349)
Q Consensus       248 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  319 (349)
                      +.|++++|.+++.++..++.+++|+.|+       .... ..+.+++|+.|++++|. +..+|.++..+++|++|++++|
T Consensus       195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence            6666666666555555566666666665       1110 12345566666666664 5566666666666666666665


Q ss_pred             C
Q 041418          320 Q  320 (349)
Q Consensus       320 ~  320 (349)
                      +
T Consensus       274 ~  274 (330)
T 1xku_A          274 N  274 (330)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.75  E-value=7.2e-18  Score=161.13  Aligned_cols=61  Identities=21%  Similarity=0.268  Sum_probs=30.7

Q ss_pred             CcccCCCCCCCEEeecCCCCcc-cchh-HHhcCcCCcEEeccCcCcccc-chh-hhccccchhhh
Q 041418          153 PSGIENLFLLRYLKLNIPSLKS-LSSS-LLSNLLNLYTLDMPFSYIDHT-VDE-FWKMKKLRHLN  213 (349)
Q Consensus       153 p~~i~~l~~L~~L~l~~~~l~~-lp~~-if~~l~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~  213 (349)
                      |..++++++|++|++++|.++. +|.. .|+++++|++|++++|.+..+ |.. ++++++|++|+
T Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  160 (455)
T 3v47_A           96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD  160 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred             hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence            4455555555555555555543 2222 125555555555555544444 333 45555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=8.9e-18  Score=155.45  Aligned_cols=196  Identities=21%  Similarity=0.128  Sum_probs=140.3

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      ++++.|.+.++.....    ....+.+++.|+            .|..++++++|++|++++|.++.+|...|+++++|+
T Consensus        52 ~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           52 EAVKSLDLSNNRITYI----SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TTCCEEECTTSCCCEE----CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             ccCcEEECCCCcCccc----CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            5788888887766532    222344444444            456789999999999999999999988669999999


Q ss_pred             EEeccCcCccccch--hhhccccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEcc
Q 041418          188 TLDMPFSYIDHTVD--EFWKMKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLAE  240 (349)
Q Consensus       188 ~L~l~~~~l~~lp~--~i~~L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~  240 (349)
                      +|++++|.++.+|.  .++++++|++|+               +.+++|+.|+++++          ..+++|+.|++++
T Consensus       128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            99999998889987  678888888887               34566666666511          4566777777777


Q ss_pred             C----------CCCCCccEEEEeecCCCCCCcccccC---Cccccccc------------ccccccccccccceeeeecc
Q 041418          241 Y----------LFPHSLTHLSFSNTDRMDDPMPVLET---LPLLQKAD------------FWTMGNAAMPKLECLIINPC  295 (349)
Q Consensus       241 ~----------~~~~~L~~L~L~~~~l~~~~~~~l~~---l~~L~~L~------------~~~~~~~~~~~L~~L~l~~c  295 (349)
                      |          ..+++|+.|++++|.+++.+...+..   .+.++.+.            .++...+.+++|+.|++++|
T Consensus       208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred             CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence            6          24677888888888777654433322   22233222            11112356789999999998


Q ss_pred             CCCCCCCccc-CCCCCCCEEEecCCC
Q 041418          296 AYLKKMPEHL-WCIKSLNKFDCWWPQ  320 (349)
Q Consensus       296 ~~l~~lp~~l-~~l~~L~~L~l~~~~  320 (349)
                      . +..+|.++ +.+++|++|++++|+
T Consensus       288 ~-l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          288 Q-LKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             C-CCccCHHHHhcCCCCCEEEeeCCC
Confidence            7 88999875 899999999999987

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.73  E-value=4.5e-17  Score=150.09  Aligned_cols=192  Identities=22%  Similarity=0.185  Sum_probs=100.5

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcC
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLN  185 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~  185 (349)
                      ...+++++.|.+.++.....+.      +.+++.|+          -.++++.+++|++|++++|.++.+|. + ..+++
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~------~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~-~~l~~  133 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISP------LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-L-ANLTK  133 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-G-TTCTT
T ss_pred             hhhcCCccEEEccCCccccchh------hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-h-ccCCc
Confidence            3446677777777665542111      33333333          22356777777777777777777665 4 67777


Q ss_pred             CcEEeccCc-Cccccchhhhccccchhhh------------hCCCCCCeeeccCC--------CCCCCccEEEEccC---
Q 041418          186 LYTLDMPFS-YIDHTVDEFWKMKKLRHLN------------FGLSCLKSLKLANE--------SKMPWLSKIVLAEY---  241 (349)
Q Consensus       186 L~~L~l~~~-~l~~lp~~i~~L~~L~~L~------------~~l~~L~~L~l~~~--------~~~~~L~~L~l~~~---  241 (349)
                      |++|++++| .+..++ .+..+++|++|+            +.+++|+.|++++.        ..+++|+.|++++|   
T Consensus       134 L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT  212 (347)
T ss_dssp             CCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             eeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCC
Confidence            777777777 444443 366666666665            34556666666521        33445555555544   


Q ss_pred             -----CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCC
Q 041418          242 -----LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKS  310 (349)
Q Consensus       242 -----~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~  310 (349)
                           ..+++|+.|++++|.++..+.  +..+++|+.|+      ........+++|+.|++++|. +..+|. +..+++
T Consensus       213 ~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~  288 (347)
T 4fmz_A          213 DITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQ-ISDISV-LNNLSQ  288 (347)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTT
T ss_pred             CCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCc-cCCChh-hcCCCC
Confidence                 234455555555555544332  44455555444      000112334445555554443 444432 444444


Q ss_pred             CCEEEecCCC
Q 041418          311 LNKFDCWWPQ  320 (349)
Q Consensus       311 L~~L~l~~~~  320 (349)
                      |+.|++++|+
T Consensus       289 L~~L~L~~n~  298 (347)
T 4fmz_A          289 LNSLFLNNNQ  298 (347)
T ss_dssp             CSEEECCSSC
T ss_pred             CCEEECcCCc
Confidence            4444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.73  E-value=3.2e-17  Score=162.32  Aligned_cols=220  Identities=21%  Similarity=0.187  Sum_probs=155.2

Q ss_pred             CeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEE
Q 041418          121 QLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTL  189 (349)
Q Consensus       121 ~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L  189 (349)
                      +++.+.+.++.....+.    ..+.+++.|+           +|..++++++|++|++++|.++.+++..|+++++|++|
T Consensus       255 ~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          255 SVESINLQKHYFFNISS----NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             EEEEEECTTCCCSSCCT----TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             ceeEEEeecCccCccCH----HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence            57777777665543222    2233333333           78888888999999999998887755433888999999


Q ss_pred             eccCcCcc-ccchh-hhccccchhhh----------------hCCCCCCeeeccCC----------CCCCCccEEEEccC
Q 041418          190 DMPFSYID-HTVDE-FWKMKKLRHLN----------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY  241 (349)
Q Consensus       190 ~l~~~~l~-~lp~~-i~~L~~L~~L~----------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~  241 (349)
                      ++++|.+. .+|.. ++.+++|++|+                +.+++|+.|+++++          ..+++|+.|++++|
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence            99988544 66554 78888888887                45678888888722          56788999999887


Q ss_pred             -----------CCCCCccEEEEeecCCCCCCcccccCCccccccc----cc-----c--cccccccccceeeeeccCCCC
Q 041418          242 -----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FW-----T--MGNAAMPKLECLIINPCAYLK  299 (349)
Q Consensus       242 -----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~-----~--~~~~~~~~L~~L~l~~c~~l~  299 (349)
                                 ..+++|+.|++++|.+...++..++.+++|++|+    .+     .  ...+.+++|+.|++++|...+
T Consensus       411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence                       4578899999999998888778888899999888    11     1  123567889999999987444


Q ss_pred             CCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418          300 KMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       300 ~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~  347 (349)
                      ..|..++.+++|++|++++|.-  .......+..++.+ .+.+.+|.+
T Consensus       491 ~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~l~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          491 IDQHAFTSLKMMNHVDLSHNRL--TSSSIEALSHLKGI-YLNLASNHI  535 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCC--CGGGGGGGTTCCSC-EEECCSSCC
T ss_pred             cChhhhccccCCCEEECCCCcc--CcCChhHhCccccc-EEECcCCcc
Confidence            4466788899999999999871  11111244444444 555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=3.8e-17  Score=149.71  Aligned_cols=219  Identities=12%  Similarity=0.085  Sum_probs=156.1

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCc
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLL  184 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~  184 (349)
                      ...+++++.|.+.++......    +..+.++..|+           +|..+.  ++|++|++++|.++.++...|++++
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~  145 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLN  145 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred             hccCCCCCEEECCCCcCCeeC----HHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCc
Confidence            567899999999988775322    23344444444           565554  7999999999999999888779999


Q ss_pred             CCcEEeccCcCcc---ccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC----------CCCCCccEEE
Q 041418          185 NLYTLDMPFSYID---HTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY----------LFPHSLTHLS  251 (349)
Q Consensus       185 ~L~~L~l~~~~l~---~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~----------~~~~~L~~L~  251 (349)
                      +|++|++++|.++   ..|..+.++++|++|+-.-..+..+.-   .-.++|+.|++++|          ..+++|+.|+
T Consensus       146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  222 (330)
T 1xku_A          146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG  222 (330)
T ss_dssp             TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS---SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred             cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc---cccccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            9999999999765   346667777777777511112222221   23367888888777          5678999999


Q ss_pred             EeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcc-cC------CCCCCCEEEec
Q 041418          252 FSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEH-LW------CIKSLNKFDCW  317 (349)
Q Consensus       252 L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~------~l~~L~~L~l~  317 (349)
                      +++|.+.+.+...+..+++|+.|+       .++.....+++|+.|++++|. ++.+|.. +.      ..++|+.+++.
T Consensus       223 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~  301 (330)
T 1xku_A          223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLF  301 (330)
T ss_dssp             CCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             CCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEee
Confidence            999998887777788888998888       333334578899999999987 8888753 22      24789999999


Q ss_pred             CCCHHHHHhhhh-cccccccccceeeecc
Q 041418          318 WPQPELRQKLRE-FEDKEQQIPNRQSTGE  345 (349)
Q Consensus       318 ~~~~~~~~~l~~-~~~~i~~ip~i~~~~~  345 (349)
                      ++|-... .+.+ .+.....+..+++.+|
T Consensus       302 ~N~~~~~-~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          302 SNPVQYW-EIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSSSCGG-GSCGGGGTTCCCGGGEEC---
T ss_pred             cCccccc-ccCccccccccceeEEEeccc
Confidence            9994332 2222 6677777888887776

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=1.2e-17  Score=170.15  Aligned_cols=168  Identities=20%  Similarity=0.151  Sum_probs=114.4

Q ss_pred             CCcccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcc-ccchhhhccccchhhh--------------hC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYID-HTVDEFWKMKKLRHLN--------------FG  215 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~--------------~~  215 (349)
                      +|..++++++|++|++++|.++ .+|..+ +.+++|++|++++|.+. .+|..++++++|++|+              +.
T Consensus       434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~  512 (768)
T 3rgz_A          434 IPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR  512 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             ccHHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence            4555666666666666666555 455554 56666666666666443 4555566666666555              34


Q ss_pred             CCCCCeeeccCC----------CCCCCccEEEEccC--------------------------------------------
Q 041418          216 LSCLKSLKLANE----------SKMPWLSKIVLAEY--------------------------------------------  241 (349)
Q Consensus       216 l~~L~~L~l~~~----------~~~~~L~~L~l~~~--------------------------------------------  241 (349)
                      +++|+.|+++++          ..+++|+.|++++|                                            
T Consensus       513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence            555666655521          34556666666554                                            


Q ss_pred             ------------------------------------CCCCCccEEEEeecCCCCCCcccccCCccccccc--------cc
Q 041418          242 ------------------------------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--------FW  277 (349)
Q Consensus       242 ------------------------------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--------~~  277 (349)
                                                          ..+++|+.|++++|.+++..+..++.+++|+.|+        .+
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i  672 (768)
T 3rgz_A          593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI  672 (768)
T ss_dssp             EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence                                                1135688899999998888888888888888888        34


Q ss_pred             ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          278 TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       278 ~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      +...+.+++|+.|++++|...+.+|..++.+++|++|++++|+
T Consensus       673 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~  715 (768)
T 3rgz_A          673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN  715 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred             ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence            4445778889999999988777888888889999999998875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.73  E-value=3.1e-17  Score=148.63  Aligned_cols=183  Identities=19%  Similarity=0.159  Sum_probs=128.2

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCc-ccCCCCCCCEEeecCCCCccc---chhHHhcCcCCcEEeccCcC
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPS-GIENLFLLRYLKLNIPSLKSL---SSSLLSNLLNLYTLDMPFSY  195 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~-~i~~l~~L~~L~l~~~~l~~l---p~~if~~l~~L~~L~l~~~~  195 (349)
                      ++++.|.+.++....                 +|. .++++++|++|++++|.++.+   |..+ ..+++|++|++++|.
T Consensus        28 ~~l~~L~L~~n~l~~-----------------i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           28 SSATRLELESNKLQS-----------------LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNG   89 (306)
T ss_dssp             TTCCEEECCSSCCCC-----------------CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCS
T ss_pred             CCCCEEECCCCccCc-----------------cCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCc
Confidence            577888877766542                 332 245566666666666665543   3444 556666666666666


Q ss_pred             ccccchhhhccccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEccC---------
Q 041418          196 IDHTVDEFWKMKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY---------  241 (349)
Q Consensus       196 l~~lp~~i~~L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~---------  241 (349)
                      +..+|..+..+++|++|+               ..+++|+.|++++.          ..+++|+.|++++|         
T Consensus        90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  169 (306)
T 2z66_A           90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  169 (306)
T ss_dssp             EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence            666665566666666655               34566667666621          45788889988877         


Q ss_pred             --CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc-cccccccccceeeeeccCCCCCCCcccCCCC-C
Q 041418          242 --LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT-MGNAAMPKLECLIINPCAYLKKMPEHLWCIK-S  310 (349)
Q Consensus       242 --~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~-~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~-~  310 (349)
                        ..+++|+.|++++|.+++.++..+..+++|+.|+       ... .....+++|+.|++++|...+..|..+..++ +
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence              5678999999999999887778888999999988       111 1235678999999999986666677788885 9


Q ss_pred             CCEEEecCCC
Q 041418          311 LNKFDCWWPQ  320 (349)
Q Consensus       311 L~~L~l~~~~  320 (349)
                      |++|++++|+
T Consensus       250 L~~L~L~~N~  259 (306)
T 2z66_A          250 LAFLNLTQND  259 (306)
T ss_dssp             CCEEECTTCC
T ss_pred             CCEEEccCCC
Confidence            9999999987

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.73  E-value=3.2e-17  Score=156.85  Aligned_cols=196  Identities=15%  Similarity=0.045  Sum_probs=136.3

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      ++++.|.+.++....    ..+..|.++..|+            .|..+.++++|++|++++|.++.+|...|+.+++|+
T Consensus        75 ~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred             CCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCC
Confidence            578888887776642    2222333333333            345667777777777777777777666556777777


Q ss_pred             EEeccCcCccccch-hhhccccchhhh-hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCC
Q 041418          188 TLDMPFSYIDHTVD-EFWKMKKLRHLN-FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDR  257 (349)
Q Consensus       188 ~L~l~~~~l~~lp~-~i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l  257 (349)
                      +|++++|.++.+|. .+.++++|++|+ .....+..+....-..+++|+.|++++|        ..+++|+.|++++|.+
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence            77777776666655 355666666665 3333333332100056788999998888        5678999999999999


Q ss_pred             CCCCcccccCCccccccc-------cc-ccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418          258 MDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       258 ~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~  320 (349)
                      .+.++..+..+++|+.|+       .. ......+++|+.|++++|. +..+|.. +..+++|+.|++++||
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence            988888999999999988       11 1123567899999999987 7788764 6789999999999877

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.73  E-value=2.5e-17  Score=158.48  Aligned_cols=222  Identities=18%  Similarity=0.113  Sum_probs=122.7

Q ss_pred             CCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418          119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNL  186 (349)
Q Consensus       119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L  186 (349)
                      .++++.|.+.++....    ..+..|.++..|+            .|..++++++|++|++++|.++.+|...|+++++|
T Consensus        31 ~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           31 PTETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             CTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            3578899888877653    2223344444444            46778888888888888888888887666788888


Q ss_pred             cEEeccCcCcccc-chhhhccccchhhh--------------hCCCCCCeeeccCC----------CCCCCccEEEEccC
Q 041418          187 YTLDMPFSYIDHT-VDEFWKMKKLRHLN--------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY  241 (349)
Q Consensus       187 ~~L~l~~~~l~~l-p~~i~~L~~L~~L~--------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~  241 (349)
                      ++|++++|.+..+ |..+.++++|++|+              +.+++|+.|++++.          ..+++|+.|++++|
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            8888888866665 44567777777776              23444444444311          23444444444443


Q ss_pred             ----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc-cccccccccceeeeeccCCCCCCCc
Q 041418          242 ----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT-MGNAAMPKLECLIINPCAYLKKMPE  303 (349)
Q Consensus       242 ----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~-~~~~~~~~L~~L~l~~c~~l~~lp~  303 (349)
                                ..+++|+.|++++|...+...+......+|+.|+       .++ ...+.+++|+.|++++|. +..++.
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~  265 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG  265 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECT
T ss_pred             cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccCh
Confidence                      2344444444444443332222222223444443       110 011345566666666655 444433


Q ss_pred             -ccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeeccccc
Q 041418          304 -HLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       304 -~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~~  348 (349)
                       .+..+++|+.|++++|.   +..+.+ .+.....+..+.+.+|.++
T Consensus       266 ~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          266 SMLHELLRLQEIQLVGGQ---LAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             TSCTTCTTCCEEECCSSC---CSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             hhccccccCCEEECCCCc---cceECHHHhcCcccCCEEECCCCcCc
Confidence             35566666666666664   112222 4445555666666666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.73  E-value=2e-17  Score=151.72  Aligned_cols=182  Identities=14%  Similarity=0.114  Sum_probs=94.4

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      ++++.|.+.++....    ..+..+.++..|+            .|..++++++|++|++++|.++.+|..+ .  ++|+
T Consensus        54 ~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~--~~L~  126 (332)
T 2ft3_A           54 PDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-P--SSLV  126 (332)
T ss_dssp             TTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSC-C--TTCC
T ss_pred             CCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccc-c--ccCC
Confidence            567777777765542    1122233333333            3555666666666666666666666655 2  5666


Q ss_pred             EEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCC------------CCCCCccEEEEccC-------CCCCCc
Q 041418          188 TLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANE------------SKMPWLSKIVLAEY-------LFPHSL  247 (349)
Q Consensus       188 ~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~------------~~~~~L~~L~l~~~-------~~~~~L  247 (349)
                      +|++++|.++.+|.. ++++++|++|+          ++++            ..+ +|+.|++++|       ...++|
T Consensus       127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~----------l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L  195 (332)
T 2ft3_A          127 ELRIHDNRIRKVPKGVFSGLRNMNCIE----------MGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETL  195 (332)
T ss_dssp             EEECCSSCCCCCCSGGGSSCSSCCEEE----------CCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSC
T ss_pred             EEECCCCccCccCHhHhCCCccCCEEE----------CCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCC
Confidence            666666666666543 55566655554          3200            111 4444444444       112355


Q ss_pred             cEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCC
Q 041418          248 THLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWP  319 (349)
Q Consensus       248 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  319 (349)
                      +.|++++|.+...++..+..+++|+.|+       .... ..+.+++|+.|++++|. +..+|.++..+++|+.|++++|
T Consensus       196 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             SCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCC
Confidence            5555555555555444555555555555       1100 12344555555555554 4455555555555555555555


Q ss_pred             C
Q 041418          320 Q  320 (349)
Q Consensus       320 ~  320 (349)
                      +
T Consensus       275 ~  275 (332)
T 2ft3_A          275 N  275 (332)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=3.6e-17  Score=155.94  Aligned_cols=166  Identities=17%  Similarity=0.101  Sum_probs=106.1

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh-hCCCCCCeeeccCCCCCC
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN-FGLSCLKSLKLANESKMP  231 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~  231 (349)
                      ..|.++++|++|++++|.++.+|...|..+++|++|++++|.++.+|. .+.++++|++|+ .....+..+.-..-..++
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            344455555555555555555544333455555555555554444433 234444444443 111122221100005678


Q ss_pred             CccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-ccccccccccceeeeecc
Q 041418          232 WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPC  295 (349)
Q Consensus       232 ~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c  295 (349)
                      +|+.|++++|        ..+++|+.|++++|.++..++..+..+++|+.|+       .. ......+++|+.|++++|
T Consensus       186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS
T ss_pred             ccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC
Confidence            8999999888        5678999999999999888788899999999988       11 112246789999999998


Q ss_pred             CCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418          296 AYLKKMPEH-LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       296 ~~l~~lp~~-l~~l~~L~~L~l~~~~  320 (349)
                      . +..+|.. +..+++|+.|++++||
T Consensus       266 ~-l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          266 N-LTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             C-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             C-CCccChhHhccccCCCEEEcCCCC
Confidence            7 7777764 6789999999999877

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.71  E-value=1.3e-16  Score=147.03  Aligned_cols=218  Identities=16%  Similarity=0.100  Sum_probs=150.0

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCc
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLL  184 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~  184 (349)
                      ...+++++.|.+.++.....      ..+.++..|+           +|. +..+++|++|++++|.....+..+ +.++
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~------~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~-~~l~  155 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI------SALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPL-SNMT  155 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC------GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGG-TTCT
T ss_pred             hhcCCcCCEEEccCCcccCc------hHHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccch-hhCC
Confidence            56677888888877765432      1234444444           333 777778888888877443333335 7778


Q ss_pred             CCcEEeccCcCccccchhhhccccchhhh------------hCCCCCCeeeccCC--------CCCCCccEEEEccC---
Q 041418          185 NLYTLDMPFSYIDHTVDEFWKMKKLRHLN------------FGLSCLKSLKLANE--------SKMPWLSKIVLAEY---  241 (349)
Q Consensus       185 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~------------~~l~~L~~L~l~~~--------~~~~~L~~L~l~~~---  241 (349)
                      +|++|++++|.+..++. ++.+++|++|+            ..+++|+.|++++.        ..+++|+.|++++|   
T Consensus       156 ~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          156 GLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             TCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccC
Confidence            88888888777777765 77777777776            45667777776622        56788999999888   


Q ss_pred             -----CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCC
Q 041418          242 -----LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKS  310 (349)
Q Consensus       242 -----~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~  310 (349)
                           ..+++|+.|++++|.++..  +.+..+++|+.|+      ........+++|+.|++++|......|..++.+++
T Consensus       235 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          235 DLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             CCcchhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence                 5788999999999988764  5688888888887      11122356788999999998744455566888999


Q ss_pred             CCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418          311 LNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       311 L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~  348 (349)
                      |++|++++|+   +..+.+ ......+..+.+.+|.++
T Consensus       313 L~~L~L~~n~---l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          313 LTTLFLSQNH---ITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSS---CCCCGG-GGGCTTCSEESSSCC---
T ss_pred             CCEEEccCCc---cccccC-hhhhhccceeehhhhccc
Confidence            9999999988   222222 455666777778777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.71  E-value=4.3e-17  Score=149.56  Aligned_cols=221  Identities=14%  Similarity=0.072  Sum_probs=152.7

Q ss_pred             CCCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcC
Q 041418          115 EDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNL  183 (349)
Q Consensus       115 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l  183 (349)
                      ....+++++.|.+.++....    ..+..+.++..|+           +|..+.  ++|++|++++|.++.+|...|+++
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l  146 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISK----IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGL  146 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCE----ECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSC
T ss_pred             HhhCCCCCcEEECCCCccCc----cCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCC
Confidence            35678899999999887653    2234455555554           666555  799999999999999998766999


Q ss_pred             cCCcEEeccCcCccc---cchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC----------CCCCCccEE
Q 041418          184 LNLYTLDMPFSYIDH---TVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY----------LFPHSLTHL  250 (349)
Q Consensus       184 ~~L~~L~l~~~~l~~---lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~----------~~~~~L~~L  250 (349)
                      ++|++|++++|.++.   .|..+..+ +|++|+-.-.++..+..   .-.++|+.|++++|          ..+++|+.|
T Consensus       147 ~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK---DLPETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS---SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             ccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc---cccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            999999999997753   45556655 66666511111111111   22356666766666          567788999


Q ss_pred             EEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcc-cCC------CCCCCEEEe
Q 041418          251 SFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEH-LWC------IKSLNKFDC  316 (349)
Q Consensus       251 ~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~------l~~L~~L~l  316 (349)
                      ++++|.+...+...++.+++|+.|+       .++...+.+++|+.|++++|. +..+|.. +..      .++|+.|++
T Consensus       223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             ECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEe
Confidence            9999998887777888888888887       333334678899999999987 7777653 322      477999999


Q ss_pred             cCCCHHHHHhhhhcccccccccceeeeccc
Q 041418          317 WWPQPELRQKLREFEDKEQQIPNRQSTGEM  346 (349)
Q Consensus       317 ~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~  346 (349)
                      .+||.....-....+..++.+..+.+.+|.
T Consensus       302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ecCcccccccCcccccccchhhhhhccccc
Confidence            999933222222267777778888877764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.71  E-value=3.6e-17  Score=156.25  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=78.7

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc-------------CCcccCCCCCCCEEeecCCCCccc-chhHHhcCcC
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------------YPSGIENLFLLRYLKLNIPSLKSL-SSSLLSNLLN  185 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------------lp~~i~~l~~L~~L~l~~~~l~~l-p~~if~~l~~  185 (349)
                      ++++.|.+.++....    ..+..+.+++.|+             .|..++++++|++|++++|.++.+ |..+ +++++
T Consensus        30 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~  104 (455)
T 3v47_A           30 AHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF-NGLAN  104 (455)
T ss_dssp             TTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTT-TTCTT
T ss_pred             CccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhc-cCccc
Confidence            678999988877653    2233445555554             256789999999999999999977 4555 99999


Q ss_pred             CcEEeccCcCccc-cchh--hhccccchhhh---------------hCCCCCCeeecc
Q 041418          186 LYTLDMPFSYIDH-TVDE--FWKMKKLRHLN---------------FGLSCLKSLKLA  225 (349)
Q Consensus       186 L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~---------------~~l~~L~~L~l~  225 (349)
                      |++|++++|.++. +|..  ++++++|++|+               +.+++|+.|+++
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            9999999997775 4554  88999999998               467889999887

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.71  E-value=1.2e-16  Score=153.38  Aligned_cols=148  Identities=21%  Similarity=0.249  Sum_probs=91.9

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCcccCCCCCCCEEeecCCCCcccchhHHhcCc
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLL  184 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~  184 (349)
                      ...+++++.|.+.++.....+     . +.+++.|+           ++. ++++++|++|++++|.++.+|. + ++++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~  134 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDIT-----P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L-KNLT  134 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-----G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCT
T ss_pred             hhhhcCCCEEECCCCccCCch-----h-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H-cCCC
Confidence            445678888888777665321     1 34444444           333 7788888888888888887776 4 8888


Q ss_pred             CCcEEeccCcCccccchhhhccccchhhh-----------hCCCCCCeeeccCC--------CCCCCccEEEEccC----
Q 041418          185 NLYTLDMPFSYIDHTVDEFWKMKKLRHLN-----------FGLSCLKSLKLANE--------SKMPWLSKIVLAEY----  241 (349)
Q Consensus       185 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-----------~~l~~L~~L~l~~~--------~~~~~L~~L~l~~~----  241 (349)
                      +|++|++++|.+..+|. ++.+++|++|+           +.+++|+.|++++.        ..+++|+.|++++|    
T Consensus       135 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~  213 (466)
T 1o6v_A          135 NLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD  213 (466)
T ss_dssp             TCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred             CCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccc
Confidence            88888888887777764 66777776665           45566666666521        34556666666555    


Q ss_pred             ----CCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418          242 ----LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD  275 (349)
Q Consensus       242 ----~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~  275 (349)
                          ..+++|+.|++++|.+...  +.+..+++|+.|+
T Consensus       214 ~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  249 (466)
T 1o6v_A          214 ITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLD  249 (466)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             cccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEE
Confidence                2345555555555554432  2344444444444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.70  E-value=1.8e-17  Score=151.00  Aligned_cols=194  Identities=12%  Similarity=0.063  Sum_probs=138.5

Q ss_pred             CCCCCCeeEEEeec-CCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCc-ccchhHHh
Q 041418          116 DDYDSQLHSFLCCS-PESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLK-SLSSSLLS  181 (349)
Q Consensus       116 ~~~~~~lr~l~~~~-~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~-~lp~~if~  181 (349)
                      ...+++++.|.+.+ +....    ..+..+.+++.|+            +|..++++++|++|++++|.++ .+|..+ +
T Consensus        72 l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~  146 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-S  146 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-G
T ss_pred             HhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-h
Confidence            56788999999985 55432    1223344444444            7889999999999999999998 788888 9


Q ss_pred             cCcCCcEEeccCcCcc-ccchhhhccc-cchhhhhCCCCCCee---eccCCCCCCCccEEEEccC----------CCCCC
Q 041418          182 NLLNLYTLDMPFSYID-HTVDEFWKMK-KLRHLNFGLSCLKSL---KLANESKMPWLSKIVLAEY----------LFPHS  246 (349)
Q Consensus       182 ~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~~~l~~L~~L---~l~~~~~~~~L~~L~l~~~----------~~~~~  246 (349)
                      ++++|++|++++|.+. .+|..++.++ +|++|+-.-..+...   .+   ..++ |+.|++++|          ..+++
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~---~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~  222 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF---ANLN-LAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG---GGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH---hCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence            9999999999999877 8899998877 777765000000000   00   2233 666666665          45677


Q ss_pred             ccEEEEeecCCCCCCcccccCCccccccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418          247 LTHLSFSNTDRMDDPMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW  318 (349)
Q Consensus       247 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  318 (349)
                      |+.|++++|.+++.+ +.+..+++|++|+        ..+...+.+++|+.|++++|...+.+|. .+.+++|+.+++.+
T Consensus       223 L~~L~L~~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~  300 (313)
T 1ogq_A          223 TQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN  300 (313)
T ss_dssp             CSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCS
T ss_pred             CCEEECCCCceeeec-CcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcC
Confidence            777777777776544 3366677777776        1222235688999999999986668887 48899999999999


Q ss_pred             CC
Q 041418          319 PQ  320 (349)
Q Consensus       319 ~~  320 (349)
                      |+
T Consensus       301 N~  302 (313)
T 1ogq_A          301 NK  302 (313)
T ss_dssp             SS
T ss_pred             CC
Confidence            88

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.70  E-value=3.5e-17  Score=163.20  Aligned_cols=223  Identities=14%  Similarity=0.058  Sum_probs=141.5

Q ss_pred             CCCCCCeeEEEeecCCCCCC--Cc-c----------hHHhhhc--cCcccc------------CCcccCCCCCCCEEeec
Q 041418          116 DDYDSQLHSFLCCSPESRHI--DP-I----------DWEKICG--MFKLLR------------YPSGIENLFLLRYLKLN  168 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~--~~-~----------~~~~~~~--~l~~L~------------lp~~i~~l~~L~~L~l~  168 (349)
                      ..++++++.|.+.++.....  .. +          .++..+.  +++.|+            +|..++++++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            45688999999998876530  00 0          0233333  455444            78899999999999999


Q ss_pred             CCC-Cc--ccchhHHhcC------cCCcEEeccCcCccccch--hhhccccchhhh-------------hCCCCCCeeec
Q 041418          169 IPS-LK--SLSSSLLSNL------LNLYTLDMPFSYIDHTVD--EFWKMKKLRHLN-------------FGLSCLKSLKL  224 (349)
Q Consensus       169 ~~~-l~--~lp~~if~~l------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~-------------~~l~~L~~L~l  224 (349)
                      +|. ++  .+|..+ +++      ++|++|++++|.++.+|.  .++++++|++|+             +.+++|+.|++
T Consensus       282 ~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L  360 (636)
T 4eco_A          282 CNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL  360 (636)
T ss_dssp             TCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred             CCCCCccccchHHH-HhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence            997 87  488887 776      889999999988888888  788888888887             22334444444


Q ss_pred             cCC---------CCCC--------------------------CccEEEEccC----------C-------CCCCccEEEE
Q 041418          225 ANE---------SKMP--------------------------WLSKIVLAEY----------L-------FPHSLTHLSF  252 (349)
Q Consensus       225 ~~~---------~~~~--------------------------~L~~L~l~~~----------~-------~~~~L~~L~L  252 (349)
                      +++         ..++                          +|+.|++++|          .       .+++|+.|++
T Consensus       361 ~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L  440 (636)
T 4eco_A          361 AYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL  440 (636)
T ss_dssp             CSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred             CCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence            411         2223                          4455555444          1       2335556666


Q ss_pred             eecCCCCCCcccccCCccccccc-------cccccc--------ccccccceeeeeccCCCCCCCcccC--CCCCCCEEE
Q 041418          253 SNTDRMDDPMPVLETLPLLQKAD-------FWTMGN--------AAMPKLECLIINPCAYLKKMPEHLW--CIKSLNKFD  315 (349)
Q Consensus       253 ~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~--------~~~~~L~~L~l~~c~~l~~lp~~l~--~l~~L~~L~  315 (349)
                      ++|.+...+...+..+++|+.|+       .++...        ..+++|+.|++++|. +..+|..+.  .+++|+.|+
T Consensus       441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~  519 (636)
T 4eco_A          441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGID  519 (636)
T ss_dssp             CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEE
T ss_pred             cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEE
Confidence            66655544444445566666665       111100        012278888888876 668888776  888888888


Q ss_pred             ecCCCHHHHHhhhhcccccccccceeee
Q 041418          316 CWWPQPELRQKLREFEDKEQQIPNRQST  343 (349)
Q Consensus       316 l~~~~~~~~~~l~~~~~~i~~ip~i~~~  343 (349)
                      +++|.   +..+.........+..+.+.
T Consensus       520 Ls~N~---l~~ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          520 LSYNS---FSKFPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             CCSSC---CSSCCCGGGGCSSCCEEECC
T ss_pred             CCCCC---CCCcChhhhcCCCCCEEECC
Confidence            88887   22243344555666666663

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=1.8e-17  Score=151.16  Aligned_cols=158  Identities=18%  Similarity=0.142  Sum_probs=93.1

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-----------hCCCCCCee
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-----------FGLSCLKSL  222 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-----------~~l~~L~~L  222 (349)
                      ..++++++|++|++++|.++.+++ + +.+++|++|++++|.++.+|.    .++|++|+           ..+++|+.|
T Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~-~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~~~~L~~L  125 (317)
T 3o53_A           52 ADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNI  125 (317)
T ss_dssp             HHHTTCTTCCEEECTTSCCEEEEE-E-TTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECCCSSCEEE
T ss_pred             HHhhCCCcCCEEECCCCcCCcchh-h-hhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCccccCCCCEE
Confidence            456677777777777777765554 3 777777777777776666653    25555554           334555555


Q ss_pred             eccCC----------CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc------
Q 041418          223 KLANE----------SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------  275 (349)
Q Consensus       223 ~l~~~----------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------  275 (349)
                      +++++          ..+++|+.|++++|           ..+++|+.|++++|.++..  +....+++|+.|+      
T Consensus       126 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             ECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcC
Confidence            55521          23456666666655           2345666666666665543  2223355555555      


Q ss_pred             -ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          276 -FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       276 -~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                       .++.....+++|+.|++++|. +..+|..+..+++|+.|++++|+
T Consensus       204 ~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          204 AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             CEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             CcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence             222223455666777776665 56666666666677777776666

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.70  E-value=2.6e-16  Score=151.05  Aligned_cols=192  Identities=18%  Similarity=0.163  Sum_probs=145.1

Q ss_pred             CCCCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEE
Q 041418          118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTL  189 (349)
Q Consensus       118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L  189 (349)
                      +++++|++.+.+......+.   -..+.+++.|.        +|. ++++++|++|++++|.++.+|. + +++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~---~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~-~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG---VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-L-ANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-TTCTTCCEE
T ss_pred             HhccccEEecCCCCCccCcc---hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-h-cCCCCCCEE
Confidence            35689999998876653221   12244555554        444 8999999999999999998887 5 999999999


Q ss_pred             eccCcCccccchhhhccccchhhh------------hCCCCCCeeeccCC-------CCCCCccEEEEccC--------C
Q 041418          190 DMPFSYIDHTVDEFWKMKKLRHLN------------FGLSCLKSLKLANE-------SKMPWLSKIVLAEY--------L  242 (349)
Q Consensus       190 ~l~~~~l~~lp~~i~~L~~L~~L~------------~~l~~L~~L~l~~~-------~~~~~L~~L~l~~~--------~  242 (349)
                      ++++|.++.+|. ++++++|++|+            +.+++|+.|.+.+.       ..+++|+.|++++|        .
T Consensus       118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~  196 (466)
T 1o6v_A          118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA  196 (466)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGG
T ss_pred             ECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhc
Confidence            999999999886 89999999998            56788888877521       57788999999888        5


Q ss_pred             CCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEe
Q 041418          243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDC  316 (349)
Q Consensus       243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  316 (349)
                      .+++|+.|++++|.+.+.+.  ++.+++|+.|+      ........+++|+.|++++|. +..+++ +..+++|+.|++
T Consensus       197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l  272 (466)
T 1o6v_A          197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKL  272 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEEC
T ss_pred             cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEEC
Confidence            67889999999998876543  67788888887      111223467788888888876 666665 777777777777


Q ss_pred             cCCC
Q 041418          317 WWPQ  320 (349)
Q Consensus       317 ~~~~  320 (349)
                      ++|.
T Consensus       273 ~~n~  276 (466)
T 1o6v_A          273 GANQ  276 (466)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            7765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=1.2e-17  Score=161.31  Aligned_cols=158  Identities=18%  Similarity=0.148  Sum_probs=74.0

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-----------hCCCCCCee
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-----------FGLSCLKSL  222 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-----------~~l~~L~~L  222 (349)
                      ..++.+++|++|++++|.++.+++ + +.+++|++|++++|.++.+|..    ++|++|+           ..+++|+.|
T Consensus        52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~~~~~~l~~L~~L  125 (487)
T 3oja_A           52 ADLAPFTKLELLNLSSNVLYETLD-L-ESLSTLRTLDLNNNYVQELLVG----PSIETLHAANNNISRVSCSRGQGKKNI  125 (487)
T ss_dssp             GGGTTCTTCCEEECTTSCCEEEEE-C-TTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSSCCCCEEECCCSSCEEE
T ss_pred             HHHhCCCCCCEEEeeCCCCCCCcc-c-ccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCCcCCCCCccccCCCCEE
Confidence            445555555555555555554443 3 5555555555555555554431    3444443           223444444


Q ss_pred             eccCC----------CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc------
Q 041418          223 KLANE----------SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------  275 (349)
Q Consensus       223 ~l~~~----------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------  275 (349)
                      +++++          ..+++|+.|++++|           ..+++|+.|+|++|.+++.  +....+++|+.|+      
T Consensus       126 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             ECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCC
T ss_pred             ECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCC
Confidence            44411          22344444444444           1344455555555544432  1222344444444      


Q ss_pred             -ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          276 -FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       276 -~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                       ..+...+.+++|+.|++++|. +..+|..++.+++|+.|++++|+
T Consensus       204 ~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          204 AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             CCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence             112222344555555555544 44455555555555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.69  E-value=2.7e-17  Score=163.93  Aligned_cols=164  Identities=16%  Similarity=0.224  Sum_probs=112.9

Q ss_pred             CCc--ccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCccccchhhhcccc-chhhh-------------h
Q 041418          152 YPS--GIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKK-LRHLN-------------F  214 (349)
Q Consensus       152 lp~--~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~-------------~  214 (349)
                      +|.  .++++++|++|++++|.++ .+| .+ +++++|++|++++|.+..+|..++++++ |++|+             +
T Consensus       320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~  397 (636)
T 4eco_A          320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD  397 (636)
T ss_dssp             CCCHHHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred             cCchhhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence            777  7888888999999888888 888 65 8888888888888877788888888888 88887             1


Q ss_pred             --CCCCCCeeeccCC----------C-------CCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccc
Q 041418          215 --GLSCLKSLKLANE----------S-------KMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVL  265 (349)
Q Consensus       215 --~l~~L~~L~l~~~----------~-------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l  265 (349)
                        .+++|+.|+++++          .       .+++|+.|++++|          ..+++|+.|++++|.++..+...+
T Consensus       398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  477 (636)
T 4eco_A          398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL  477 (636)
T ss_dssp             TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred             hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence              1336777777622          1       4457888888877          246777777777777765443333


Q ss_pred             cCC-------ccccccc-------ccccccc--cccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418          266 ETL-------PLLQKAD-------FWTMGNA--AMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW  318 (349)
Q Consensus       266 ~~l-------~~L~~L~-------~~~~~~~--~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  318 (349)
                      ...       ++|+.|+       .++....  .+++|+.|++++|. +..+|..++.+++|+.|++++
T Consensus       478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCSSCCEEECCS
T ss_pred             ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCC-CCCcChhhhcCCCCCEEECCC
Confidence            322       2666665       2222222  56677777777765 555776666677777777744

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=1.3e-16  Score=157.92  Aligned_cols=200  Identities=20%  Similarity=0.121  Sum_probs=155.9

Q ss_pred             CCCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-------CCcccCCCCCCCEEeecCCCCccc---chhHHhcCc
Q 041418          115 EDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------YPSGIENLFLLRYLKLNIPSLKSL---SSSLLSNLL  184 (349)
Q Consensus       115 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------lp~~i~~l~~L~~L~l~~~~l~~l---p~~if~~l~  184 (349)
                      ....+++++.+.+.++.....+ ..   .+.+++.|.       .+..++.+++|++|++++|.++.+   |..+ +.++
T Consensus       302 ~l~~~~~L~~L~l~~n~l~~lp-~~---~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~  376 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQLKQFP-TL---DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD-LGTN  376 (606)
T ss_dssp             CCCTTCCCSEEEEESCCCSSCC-CC---CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHH-HCCS
T ss_pred             hccccccCCEEEcccccCcccc-cC---CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhh-ccCC
Confidence            3455667777777776664322 11   334444444       123567889999999999988866   6666 9999


Q ss_pred             CCcEEeccCcCccccchhhhccccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEc
Q 041418          185 NLYTLDMPFSYIDHTVDEFWKMKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLA  239 (349)
Q Consensus       185 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~  239 (349)
                      +|++|++++|.+..+|..+..+++|++|+               +.+++|+.|++++.          ..+++|+.|+++
T Consensus       377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  456 (606)
T 3vq2_A          377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA  456 (606)
T ss_dssp             CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             cccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence            99999999998888998888999999887               46788999988722          567899999998


Q ss_pred             cC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-ccccccccccceeeeeccCCCCC
Q 041418          240 EY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPCAYLKK  300 (349)
Q Consensus       240 ~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~  300 (349)
                      +|           ..+++|+.|++++|.+++.++..++.+++|+.|+       .. +...+.+++|+.|++++|. +..
T Consensus       457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~  535 (606)
T 3vq2_A          457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IET  535 (606)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCC
T ss_pred             CCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-Ccc
Confidence            88           5678999999999999888878899999999998       11 2233567899999999987 889


Q ss_pred             CCcccCCCC-CCCEEEecCCC
Q 041418          301 MPEHLWCIK-SLNKFDCWWPQ  320 (349)
Q Consensus       301 lp~~l~~l~-~L~~L~l~~~~  320 (349)
                      +|.++..++ +|++|++++||
T Consensus       536 ~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          536 SKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EESCGGGSCTTCCEEECCSCC
T ss_pred             cCHhHhhhcccCcEEEccCCC
Confidence            998888887 59999998876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=6.8e-17  Score=165.24  Aligned_cols=164  Identities=15%  Similarity=0.208  Sum_probs=86.1

Q ss_pred             CCc--ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhcccc-chhhh-------------hC
Q 041418          152 YPS--GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKK-LRHLN-------------FG  215 (349)
Q Consensus       152 lp~--~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~-------------~~  215 (349)
                      +|.  .++++++|++|++++|.++.+| .+ +++++|++|++++|.+..+|..++++++ |++|+             +.
T Consensus       563 ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~  640 (876)
T 4ecn_A          563 FPASASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNA  640 (876)
T ss_dssp             CCCHHHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCT
T ss_pred             cCChhhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhc
Confidence            555  5666666666666666666666 44 6666666666666655566666666666 66665             11


Q ss_pred             C--CCCCeeeccCC------C---------CCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCccccc--
Q 041418          216 L--SCLKSLKLANE------S---------KMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLE--  266 (349)
Q Consensus       216 l--~~L~~L~l~~~------~---------~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~--  266 (349)
                      +  ++|+.|+++++      .         .+++|+.|++++|          ..+++|+.|+|++|.+...+...+.  
T Consensus       641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~  720 (876)
T 4ecn_A          641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK  720 (876)
T ss_dssp             TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT
T ss_pred             cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc
Confidence            1  22455554411      0         1225556666555          2345566666666555533322222  


Q ss_pred             -----CCccccccc-------ccccccc--cccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418          267 -----TLPLLQKAD-------FWTMGNA--AMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW  318 (349)
Q Consensus       267 -----~l~~L~~L~-------~~~~~~~--~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  318 (349)
                           ++++|+.|+       .++....  .+++|+.|++++|. +..+|..++.+++|+.|++++
T Consensus       721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTTCCEEECCC
T ss_pred             cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCCCCEEECCC
Confidence                 122455544       1222222  45556666666654 444555555566666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.68  E-value=2.8e-16  Score=155.54  Aligned_cols=45  Identities=29%  Similarity=0.445  Sum_probs=27.4

Q ss_pred             cccCCCCCCCEEeecCCCCc--ccchhHHhcCcCCcEEeccCcCcccc
Q 041418          154 SGIENLFLLRYLKLNIPSLK--SLSSSLLSNLLNLYTLDMPFSYIDHT  199 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~--~lp~~if~~l~~L~~L~l~~~~l~~l  199 (349)
                      ..++++++|++|++++|.++  .+|..+ +++++|++|++++|.++.+
T Consensus       122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          122 FPIGQLITLKKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEE
T ss_pred             cccCCCCCCCEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceec
Confidence            45666666666666666665  355555 6666666666666655444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.68  E-value=1.2e-16  Score=144.85  Aligned_cols=190  Identities=16%  Similarity=0.153  Sum_probs=141.0

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc---chhhhccccchhhh-------------hC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT---VDEFWKMKKLRHLN-------------FG  215 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~-------------~~  215 (349)
                      +|..+.  ++|++|++++|.++.+|..+|+++++|++|++++|.++.+   |..+..+++|++|+             ..
T Consensus        22 ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~   99 (306)
T 2z66_A           22 VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG   99 (306)
T ss_dssp             CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred             CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCC
Confidence            555443  6899999999999999998779999999999999987765   67788899999998             56


Q ss_pred             CCCCCeeeccCC-----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCC-CCcccccCCccccc
Q 041418          216 LSCLKSLKLANE-----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMD-DPMPVLETLPLLQK  273 (349)
Q Consensus       216 l~~L~~L~l~~~-----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~  273 (349)
                      +++|++|+++++           ..+++|+.|++++|          ..+++|+.|++++|.+.+ ..+..++.+++|+.
T Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            788888888722           45678888888887          457888888888888765 34466778888888


Q ss_pred             cc-------cc-ccccccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCCHHHHHhhhh-ccccc-ccccceee
Q 041418          274 AD-------FW-TMGNAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQPELRQKLRE-FEDKE-QQIPNRQS  342 (349)
Q Consensus       274 L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i-~~ip~i~~  342 (349)
                      |+       .. +...+.+++|+.|++++|. +..+|. .+..+++|+.|++++|+   +....+ .+... ..+..+.+
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH---IMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC---CCBCSSSSCCCCCTTCCEEEC
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC---CcccCHHHHHhhhccCCEEEc
Confidence            87       11 1123467888899998887 666654 57788899999998887   112111 33333 35566777


Q ss_pred             ecccc
Q 041418          343 TGEMM  347 (349)
Q Consensus       343 ~~~~~  347 (349)
                      .+|.+
T Consensus       256 ~~N~~  260 (306)
T 2z66_A          256 TQNDF  260 (306)
T ss_dssp             TTCCE
T ss_pred             cCCCe
Confidence            77655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.68  E-value=2e-16  Score=151.26  Aligned_cols=217  Identities=16%  Similarity=0.125  Sum_probs=150.1

Q ss_pred             eeEEEeecCCCCCCCcchHHhhhccCcccc---------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEecc
Q 041418          122 LHSFLCCSPESRHIDPIDWEKICGMFKLLR---------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMP  192 (349)
Q Consensus       122 lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~  192 (349)
                      .+.+.+.+......+    .....+++.|.         .|..|+++++|++|++++|.++.++...|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~~iP----~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVP----QGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCC----SCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccC----CCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            345555554443222    22334556555         46778999999999999999998876655899999999999


Q ss_pred             CcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCC
Q 041418          193 FSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDD  260 (349)
Q Consensus       193 ~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~  260 (349)
                      +|.++.+|.. +..+++|++|+-.-..+..+.-..-..+++|+.|+++++           ..+++|+.|++++|.+...
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            9988888765 667777777761111222221000045667777777663           5788999999999998865


Q ss_pred             CcccccCCccccccc-------cc-ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cc
Q 041418          261 PMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FE  331 (349)
Q Consensus       261 ~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~  331 (349)
                        +.+..+++|+.|+       .. +.....+++|+.|++++|......|..+..+++|+.|++++|.   +..+.. .+
T Consensus       212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~  286 (452)
T 3zyi_A          212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN---LSSLPHDLF  286 (452)
T ss_dssp             --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCTTSS
T ss_pred             --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc---CCccChHHh
Confidence              4688889999888       11 2223568899999999988444445678899999999999987   223333 45


Q ss_pred             cccccccceeeecccc
Q 041418          332 DKEQQIPNRQSTGEMM  347 (349)
Q Consensus       332 ~~i~~ip~i~~~~~~~  347 (349)
                      ..+..+..+.+.+|-+
T Consensus       287 ~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          287 TPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTCTTCCEEECCSSCE
T ss_pred             ccccCCCEEEccCCCc
Confidence            5566777777777753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.68  E-value=1e-16  Score=158.70  Aligned_cols=60  Identities=25%  Similarity=0.305  Sum_probs=27.5

Q ss_pred             cccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCcCcccc---chhhhccccchhhh
Q 041418          154 SGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFSYIDHT---VDEFWKMKKLRHLN  213 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~~l~~l---p~~i~~L~~L~~L~  213 (349)
                      ..++.+++|++|++++|.+. .+|...|+++++|++|++++|.+..+   |..++.+++|++|+
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~  382 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN  382 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE
Confidence            34444555555555555443 34433224455555555555544333   33344444444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=2.3e-16  Score=141.52  Aligned_cols=163  Identities=17%  Similarity=0.148  Sum_probs=112.9

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC-cccc-chhhhccccchhhhhCCCCCCee---eccCCC
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY-IDHT-VDEFWKMKKLRHLNFGLSCLKSL---KLANES  228 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~-l~~l-p~~i~~L~~L~~L~~~l~~L~~L---~l~~~~  228 (349)
                      ..++.+++|++|++++|.++.++...|+++++|++|++++|. ++.+ |..+..+++|++|+-.-..+..+   .+   .
T Consensus        50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~  126 (285)
T 1ozn_A           50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF---R  126 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT---T
T ss_pred             HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh---h
Confidence            457777788888888887776643333778888888888874 7777 55566666666665111111111   01   4


Q ss_pred             CCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-cccccccccccee
Q 041418          229 KMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECL  290 (349)
Q Consensus       229 ~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L  290 (349)
                      .+++|+.|++++|          ..+++|+.|++++|.++..+...+..+++|+.|+       .. +...+.+++|+.|
T Consensus       127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  206 (285)
T 1ozn_A          127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (285)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence            4666777777666          4577888888888888776666677888888877       11 1223567899999


Q ss_pred             eeeccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418          291 IINPCAYLKKMPE-HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       291 ~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  320 (349)
                      ++++|. +..+|. .+..+++|+.|++++|+
T Consensus       207 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          207 YLFANN-LSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             ECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             eCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence            999987 777775 48899999999999987

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=2e-16  Score=161.74  Aligned_cols=203  Identities=13%  Similarity=0.064  Sum_probs=127.3

Q ss_pred             CCCCCCeeEEEeecCCCCCC--C-cc----------hHHhhhc--cCcccc------------CCcccCCCCCCCEEeec
Q 041418          116 DDYDSQLHSFLCCSPESRHI--D-PI----------DWEKICG--MFKLLR------------YPSGIENLFLLRYLKLN  168 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~--~-~~----------~~~~~~~--~l~~L~------------lp~~i~~l~~L~~L~l~  168 (349)
                      ..++++++.|.+.++.....  + ..          .++..+.  +++.|+            +|..++++++|++|+++
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            45678888888888776530  0 00          0222222  444444            78888888888888888


Q ss_pred             CCC-Ccc--cchhHHhcCc-------CCcEEeccCcCccccch--hhhccccchhhh------------hCCCCCCeeec
Q 041418          169 IPS-LKS--LSSSLLSNLL-------NLYTLDMPFSYIDHTVD--EFWKMKKLRHLN------------FGLSCLKSLKL  224 (349)
Q Consensus       169 ~~~-l~~--lp~~if~~l~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~------------~~l~~L~~L~l  224 (349)
                      +|. ++.  +|..+ ++++       +|++|++++|.+..+|.  .++++++|++|+            +.+++|+.|++
T Consensus       524 ~N~~lsg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~L  602 (876)
T 4ecn_A          524 CNRGISAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKL  602 (876)
T ss_dssp             TCTTSCHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEEC
T ss_pred             CCCCcccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEEC
Confidence            887 773  77776 6665       88888888887778887  778888887776            33445555555


Q ss_pred             cCC---------CCCCC-ccEEEEccC---------C-------------------------------CCCCccEEEEee
Q 041418          225 ANE---------SKMPW-LSKIVLAEY---------L-------------------------------FPHSLTHLSFSN  254 (349)
Q Consensus       225 ~~~---------~~~~~-L~~L~l~~~---------~-------------------------------~~~~L~~L~L~~  254 (349)
                      +++         ..+++ |+.|++++|         .                               ..++|+.|++++
T Consensus       603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~  682 (876)
T 4ecn_A          603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY  682 (876)
T ss_dssp             CSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred             cCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence            411         22334 555555544         0                               112455555555


Q ss_pred             cCCCCCCcccccCCccccccc-------cccccc--------ccccccceeeeeccCCCCCCCcccC--CCCCCCEEEec
Q 041418          255 TDRMDDPMPVLETLPLLQKAD-------FWTMGN--------AAMPKLECLIINPCAYLKKMPEHLW--CIKSLNKFDCW  317 (349)
Q Consensus       255 ~~l~~~~~~~l~~l~~L~~L~-------~~~~~~--------~~~~~L~~L~l~~c~~l~~lp~~l~--~l~~L~~L~l~  317 (349)
                      |.+...+...+..+++|+.|+       .++...        ..+++|+.|++++|. +..+|..+.  .+++|+.|+++
T Consensus       683 N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls  761 (876)
T 4ecn_A          683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVS  761 (876)
T ss_dssp             SCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECC
T ss_pred             CcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeC
Confidence            555544433344566666666       111110        122388888888886 778888776  88889999988


Q ss_pred             CCC
Q 041418          318 WPQ  320 (349)
Q Consensus       318 ~~~  320 (349)
                      +|.
T Consensus       762 ~N~  764 (876)
T 4ecn_A          762 YNC  764 (876)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            886

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.67  E-value=8.4e-17  Score=148.85  Aligned_cols=198  Identities=16%  Similarity=0.137  Sum_probs=144.2

Q ss_pred             hccCcccc--------CC-cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhh
Q 041418          144 CGMFKLLR--------YP-SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLN  213 (349)
Q Consensus       144 ~~~l~~L~--------lp-~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~  213 (349)
                      ..+++.|.        +| ..++++++|++|++++|.++.++...|+++++|++|++++|.++.+|.. ++++++|++|+
T Consensus        51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            34566655        44 4789999999999999999988665449999999999999999999877 78888888887


Q ss_pred             ---hCCCCCCe-eeccCCCCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc---
Q 041418          214 ---FGLSCLKS-LKLANESKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---  275 (349)
Q Consensus       214 ---~~l~~L~~-L~l~~~~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---  275 (349)
                         ..++.+.. -.+   ..+++|+.|++++|           ..+++|+.|++++|.+.+..+..++.+++|++|+   
T Consensus       131 L~~n~l~~l~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          131 LLGNPYKTLGETSLF---SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             CTTCCCSSSCSSCSC---TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             CCCCCCcccCchhhh---ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence               22222222 011   56788888888876           4578899999999998887778888899999887   


Q ss_pred             -c---ccc-ccccccccceeeeeccCCCCCC--------------------------------CcccCCCCCCCEEEecC
Q 041418          276 -F---WTM-GNAAMPKLECLIINPCAYLKKM--------------------------------PEHLWCIKSLNKFDCWW  318 (349)
Q Consensus       276 -~---~~~-~~~~~~~L~~L~l~~c~~l~~l--------------------------------p~~l~~l~~L~~L~l~~  318 (349)
                       .   .+. ..+.+++|+.|++++|. +..+                                |.+++.+++|+.|++++
T Consensus       208 n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~  286 (353)
T 2z80_A          208 KQHILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR  286 (353)
T ss_dssp             SCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred             CccccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence             1   110 01246889999999887 4443                                33466788999999998


Q ss_pred             CCHHHHHhhhhc-ccccccccceeeeccccc
Q 041418          319 PQPELRQKLREF-EDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       319 ~~~~~~~~l~~~-~~~i~~ip~i~~~~~~~~  348 (349)
                      |.   +..+... +.....+..+.+.+|.++
T Consensus       287 N~---l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          287 NQ---LKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             SC---CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CC---CCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            87   2244443 466777778888877653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.66  E-value=8.6e-16  Score=136.78  Aligned_cols=152  Identities=22%  Similarity=0.214  Sum_probs=96.4

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCC
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPW  232 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~  232 (349)
                      ..++++++|++|++++|.++.+|..+|+++++|++|++++|.++.+|.. +..+++|++|          +++++    .
T Consensus        55 ~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L----------~l~~n----~  120 (270)
T 2o6q_A           55 KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL----------RLDRN----Q  120 (270)
T ss_dssp             TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE----------ECCSS----C
T ss_pred             HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE----------ECCCC----c
Confidence            3567777777777777777777776666777777777777777776653 2434433333          32100    0


Q ss_pred             ccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccceeeeeccCCCCCCCcc
Q 041418          233 LSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLECLIINPCAYLKKMPEH  304 (349)
Q Consensus       233 L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~~L~l~~c~~l~~lp~~  304 (349)
                      +..+.-.....+++|+.|++++|.+...+...++.+++|+.|+       .+.. ....+++|+.|++++|. +..+|..
T Consensus       121 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~  199 (270)
T 2o6q_A          121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEG  199 (270)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred             cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHH
Confidence            0000000003456667777777766666655566666666666       1111 12457899999999986 7788764


Q ss_pred             -cCCCCCCCEEEecCCC
Q 041418          305 -LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       305 -l~~l~~L~~L~l~~~~  320 (349)
                       +..+++|+.|++++||
T Consensus       200 ~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          200 AFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             TTTTCTTCCEEECCSSC
T ss_pred             HhccccCCCEEEecCCC
Confidence             7889999999999876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.66  E-value=1.3e-16  Score=156.05  Aligned_cols=61  Identities=26%  Similarity=0.195  Sum_probs=34.0

Q ss_pred             CcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc--cchhhhccccchhhh
Q 041418          153 PSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH--TVDEFWKMKKLRHLN  213 (349)
Q Consensus       153 p~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~  213 (349)
                      |.+++++++|++|++++|.++.+|+..|+++++|++|++++|.++.  +|..++++++|++|+
T Consensus        67 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             hhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            3455666666666666666665555533666666666666665543  244455555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.66  E-value=3.3e-16  Score=140.42  Aligned_cols=188  Identities=13%  Similarity=0.060  Sum_probs=142.4

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc-chhhhccccchhhh-hCCCCCCee---eccC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLN-FGLSCLKSL---KLAN  226 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~-~~l~~L~~L---~l~~  226 (349)
                      +|..+  .++|++|++++|.++.+|...|+++++|++|++++|.++.+ |..++.+++|++|+ ..-..+..+   .+  
T Consensus        26 ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~--  101 (285)
T 1ozn_A           26 VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF--  101 (285)
T ss_dssp             CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT--
T ss_pred             CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHh--
Confidence            45433  46899999999999999876559999999999999988888 66788888888886 111112222   12  


Q ss_pred             CCCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccc
Q 041418          227 ESKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLE  288 (349)
Q Consensus       227 ~~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~  288 (349)
                       ..+++|+.|++++|          ..+++|+.|++++|.+...+...++.+++|+.|+       .+.. ....+++|+
T Consensus       102 -~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  180 (285)
T 1ozn_A          102 -HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD  180 (285)
T ss_dssp             -TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             -cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccC
Confidence             56789999999887          5678999999999999988877899999999998       2221 135678999


Q ss_pred             eeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418          289 CLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       289 ~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~  347 (349)
                      .|++++|......|..+..+++|+.|++++|.   +..+.. .+....++..+.+.+|.+
T Consensus       181 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN---LSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             EEECCCCcccccCHhHccCcccccEeeCCCCc---CCcCCHHHcccCcccCEEeccCCCc
Confidence            99999998444447789999999999999987   222222 345556666777777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=3.1e-16  Score=140.00  Aligned_cols=181  Identities=19%  Similarity=0.164  Sum_probs=127.9

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT  199 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l  199 (349)
                      ++++.|.+.++.....                .+..++++++|++|++++|.++.++...|+++++|++|++++|.++.+
T Consensus        28 ~~l~~L~ls~n~l~~~----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHL----------------GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             TTCCEEECTTCCCCEE----------------CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCccEEECCCCccccc----------------CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            4577777776655320                223677888888888888888887765558888888888888877777


Q ss_pred             c-hhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCccc
Q 041418          200 V-DEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPV  264 (349)
Q Consensus       200 p-~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~  264 (349)
                      | ..+.++++|++|+   ..+..+....+   ..+++|+.|++++|           ..+++|+.|++++|.++..+...
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  168 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPI---GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  168 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCC---TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhc---ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence            5 4567777777775   22222222222   56677777777766           44689999999999998877777


Q ss_pred             ccCCcccccc----c-------ccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418          265 LETLPLLQKA----D-------FWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       265 l~~l~~L~~L----~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~  320 (349)
                      +..+++|+.|    +       ..........+|+.|++++|. +..+|.. +..+++|+.|+++++|
T Consensus       169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             GHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             hhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence            7777777633    3       111111234489999999987 8888875 5889999999999654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.66  E-value=5.3e-16  Score=147.84  Aligned_cols=190  Identities=16%  Similarity=0.138  Sum_probs=139.9

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKM  230 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~  230 (349)
                      .+..++++++|++|++++|.++.++...|.++++|++|++++|.++.+|. .+..+++|++|+-.-..+..+.-..-..+
T Consensus        80 ~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  159 (440)
T 3zyj_A           80 KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI  159 (440)
T ss_dssp             CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTC
T ss_pred             CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhC
Confidence            34678999999999999999998887666999999999999999999976 47777777777611112222210000456


Q ss_pred             CCccEEEEccC-----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-ccccccccccceee
Q 041418          231 PWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLI  291 (349)
Q Consensus       231 ~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~  291 (349)
                      ++|+.|+++++           ..+++|+.|++++|.++..+  .+..+++|+.|+       .. +.....+++|+.|+
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  237 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW  237 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence            77777777764           56889999999999988654  688889999888       11 12235678999999


Q ss_pred             eeccCCCCCC-CcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418          292 INPCAYLKKM-PEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       292 l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~  347 (349)
                      +++|. +..+ |..+..+++|+.|++++|.   +..+.. .+..+.++..+.+.+|-+
T Consensus       238 L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          238 MIQSQ-IQVIERNAFDNLQSLVEINLAHNN---LTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CTTCC-CCEECTTSSTTCTTCCEEECTTSC---CCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCc-eeEEChhhhcCCCCCCEEECCCCC---CCccChhHhccccCCCEEEcCCCCc
Confidence            99987 5555 4568899999999999987   223333 455667777777777754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.65  E-value=4.9e-16  Score=151.00  Aligned_cols=194  Identities=17%  Similarity=0.107  Sum_probs=134.0

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      ++++.|.+.++....    ..+..+.++..|+            .|.+++++++|++|++++|.++.+|..   .+++|+
T Consensus        21 ~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~   93 (520)
T 2z7x_B           21 QKTTILNISQNYISE----LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLK   93 (520)
T ss_dssp             TTCSEEECCSSCCCC----CCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCS
T ss_pred             ccccEEECCCCcccc----cChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCcc
Confidence            789999999887753    2233455555554            478899999999999999999999875   799999


Q ss_pred             EEeccCcCccc--cchhhhccccchhhh-----------hCCCCC--CeeeccCC-------------------------
Q 041418          188 TLDMPFSYIDH--TVDEFWKMKKLRHLN-----------FGLSCL--KSLKLANE-------------------------  227 (349)
Q Consensus       188 ~L~l~~~~l~~--lp~~i~~L~~L~~L~-----------~~l~~L--~~L~l~~~-------------------------  227 (349)
                      +|++++|.+..  +|..++++++|++|+           +.+++|  +.|++++.                         
T Consensus        94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~  173 (520)
T 2z7x_B           94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP  173 (520)
T ss_dssp             EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred             EEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence            99999998776  578899999999998           345566  66655410                         


Q ss_pred             -------------CCCCCccEEEEcc------------------------------C-------------CCCCCccEEE
Q 041418          228 -------------SKMPWLSKIVLAE------------------------------Y-------------LFPHSLTHLS  251 (349)
Q Consensus       228 -------------~~~~~L~~L~l~~------------------------------~-------------~~~~~L~~L~  251 (349)
                                   ..+++|+.+++++                              +             ...++|+.|+
T Consensus       174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~  253 (520)
T 2z7x_B          174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS  253 (520)
T ss_dssp             SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred             cCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence                         0123333333333                              2             0134778888


Q ss_pred             EeecCCCCCCcccc-----cCCccccccc----cc--c------------------------cc--cccccccceeeeec
Q 041418          252 FSNTDRMDDPMPVL-----ETLPLLQKAD----FW--T------------------------MG--NAAMPKLECLIINP  294 (349)
Q Consensus       252 L~~~~l~~~~~~~l-----~~l~~L~~L~----~~--~------------------------~~--~~~~~~L~~L~l~~  294 (349)
                      +++|.+.+..+..+     +.+++|+.++    ..  +                        ..  .+.+++|+.|++++
T Consensus       254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~  333 (520)
T 2z7x_B          254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN  333 (520)
T ss_dssp             EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCS
T ss_pred             eecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeEC
Confidence            88887765444444     5555555544    00  0                        00  14677888888888


Q ss_pred             cCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          295 CAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       295 c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      |...+.+|..++.+++|++|++++|.
T Consensus       334 n~l~~~~~~~~~~l~~L~~L~L~~N~  359 (520)
T 2z7x_B          334 NLLTDTVFENCGHLTELETLILQMNQ  359 (520)
T ss_dssp             SCCCTTTTTTCCCCSSCCEEECCSSC
T ss_pred             CccChhhhhhhccCCCCCEEEccCCc
Confidence            87555577778888888888888887

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.65  E-value=1.7e-15  Score=136.41  Aligned_cols=173  Identities=16%  Similarity=0.100  Sum_probs=101.3

Q ss_pred             CCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc---------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR---------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~---------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      .++++++.+.+.++.....+..    ...+++.|.         .|..+..+++|++|++++|.++.+|..  +.+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             cccCCccEEECCCCCCCcCCCC----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            3456677777766555421111    112222222         223444455555555555555544432  3445555


Q ss_pred             EEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC----------CCCCCccEEEEeecCC
Q 041418          188 TLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDR  257 (349)
Q Consensus       188 ~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l  257 (349)
                      +|++++|.++.+|..+..                        +++|+.|++++|          ..+++|+.|++++|.+
T Consensus        81 ~L~Ls~N~l~~l~~~~~~------------------------l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  136 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQT------------------------LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL  136 (290)
T ss_dssp             EEECCSSCCSSCCCCTTT------------------------CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred             EEECCCCcCCcCchhhcc------------------------CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence            555555544444444433                        334444444444          4456677777777777


Q ss_pred             CCCCcccccCCccccccc-------ccccc-cccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          258 MDDPMPVLETLPLLQKAD-------FWTMG-NAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       258 ~~~~~~~l~~l~~L~~L~-------~~~~~-~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      ...+...+..+++|+.|+       .++.. ...+++|+.|++++|. +..+|.++...++|+.++++++|
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence            666666666667776666       11111 1457899999999987 88999999999999999999877

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.65  E-value=5.6e-16  Score=140.75  Aligned_cols=173  Identities=16%  Similarity=0.110  Sum_probs=119.3

Q ss_pred             CCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418          118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      ++++++.|.+.++....                 +| .++.+++|++|++++|.++.+|. + +++++|++|++++|.++
T Consensus        39 ~l~~L~~L~l~~~~i~~-----------------l~-~~~~l~~L~~L~L~~n~i~~~~~-~-~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-----------------IE-GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLK   98 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-----------------CT-TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCS
T ss_pred             HcCCcCEEEeeCCCccC-----------------ch-hhhccCCCCEEEccCCcCCCChh-H-ccCCCCCEEEccCCcCC
Confidence            45678888887765542                 22 45667777777777777777776 4 77777777777777777


Q ss_pred             ccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCccccc
Q 041418          198 HTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLE  266 (349)
Q Consensus       198 ~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~  266 (349)
                      .+| .++.+++|++|+   ..++.+..  +   ..+++|+.|++++|        ..+++|+.|++++|.+...+  .+.
T Consensus        99 ~~~-~~~~l~~L~~L~l~~n~l~~~~~--l---~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~  170 (308)
T 1h6u_A           99 NVS-AIAGLQSIKTLDLTSTQITDVTP--L---AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLA  170 (308)
T ss_dssp             CCG-GGTTCTTCCEEECTTSCCCCCGG--G---TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGT
T ss_pred             Cch-hhcCCCCCCEEECCCCCCCCchh--h---cCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCCh--hhc
Confidence            765 366666666665   22222221  1   45666777776666        45677888888888776543  277


Q ss_pred             CCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          267 TLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       267 ~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      .+++|+.|+      .-......+++|+.|++++|. +..+|+ +..+++|+.|++++|+
T Consensus       171 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEE
T ss_pred             CCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCe
Confidence            777777777      111123578899999999987 778875 8899999999998877

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.65  E-value=2.9e-15  Score=147.15  Aligned_cols=59  Identities=12%  Similarity=0.145  Sum_probs=42.5

Q ss_pred             cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhc-ccccccccceeeecccc
Q 041418          285 PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREF-EDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       285 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~-~~~i~~ip~i~~~~~~~  347 (349)
                      ++|+.|++++|. +..+|.++..+++|+.|++++|.   +..+... +....++..+.+.+|.+
T Consensus       450 ~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~---l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          450 PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ---LKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC---CCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC---CCCCCHHHHhcCCCCCEEEecCCCc
Confidence            578888888875 77888878888888888888887   2234443 55666666777777754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.64  E-value=3e-16  Score=157.42  Aligned_cols=61  Identities=28%  Similarity=0.312  Sum_probs=37.2

Q ss_pred             CcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccc-hhhhccccchhhh
Q 041418          153 PSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTV-DEFWKMKKLRHLN  213 (349)
Q Consensus       153 p~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~  213 (349)
                      |..++++++|++|++++|.++.+|...|+++++|++|++++|.+..+| ..++++++|++|+
T Consensus        66 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  127 (680)
T 1ziw_A           66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD  127 (680)
T ss_dssp             TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred             HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence            445566666666666666666666543366666666666666555554 3456666666665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.64  E-value=2.4e-15  Score=144.07  Aligned_cols=185  Identities=17%  Similarity=0.122  Sum_probs=105.1

Q ss_pred             CCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcE
Q 041418          117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYT  188 (349)
Q Consensus       117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~  188 (349)
                      .++++++.|.+.++.....+  .+ ..+.+++.|.        +|  ++.+++|++|++++|.++.+|  + +++++|++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~--~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~l~~L~~  110 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT--GI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TPLTKLTY  110 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT--TG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TTCTTCCE
T ss_pred             hHcCCCCEEEccCCCcccCh--hh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CCCCcCCE
Confidence            34678888888887665321  11 1123333333        43  788888999999998888876  4 88889999


Q ss_pred             EeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCC
Q 041418          189 LDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDD  260 (349)
Q Consensus       189 L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~  260 (349)
                      |++++|.++.+|  ++.+++|++|+-.-.++..+.+   ..+++|+.|++++|        ..+++|+.|++++|.+++.
T Consensus       111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l---~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDV---SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCC---TTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCcCCeec--CCCCCcCCEEECCCCccceecc---ccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee
Confidence            999988888876  7788888888711111222222   34455555555444        3345555555555555443


Q ss_pred             CcccccCCccccccc----cc-ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          261 PMPVLETLPLLQKAD----FW-TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       261 ~~~~l~~l~~L~~L~----~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      +   ++.+++|+.|.    .+ ..+.+.+++|+.|++++|. +..+|  ++.+++|+.|++++|.
T Consensus       186 ~---l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          186 D---VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             C---CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSSC
T ss_pred             c---cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCCc
Confidence            2   44444444444    00 0012344555555555544 44444  4445555555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.64  E-value=8.5e-16  Score=150.75  Aligned_cols=80  Identities=21%  Similarity=0.147  Sum_probs=49.8

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CCc-ccCCCCCCCEEeecCCCCcc--cchhHHh
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YPS-GIENLFLLRYLKLNIPSLKS--LSSSLLS  181 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp~-~i~~l~~L~~L~l~~~~l~~--lp~~if~  181 (349)
                      ...++++|.|.+.++....    ..+..|.+++.|+           +|. .++++++|++|++++|.++.  +|..+ +
T Consensus        72 ~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~  146 (570)
T 2z63_A           72 YQSLSHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-S  146 (570)
T ss_dssp             TTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-G
T ss_pred             ccCchhCCEEeCcCCcCCc----cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-c
Confidence            3456666777666655432    1222334444443           332 47777888888888887764  57776 7


Q ss_pred             cCcCCcEEeccCcCccccc
Q 041418          182 NLLNLYTLDMPFSYIDHTV  200 (349)
Q Consensus       182 ~l~~L~~L~l~~~~l~~lp  200 (349)
                      ++++|++|++++|.+..+|
T Consensus       147 ~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A          147 NLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             GCTTCCEEECTTSCCCEEC
T ss_pred             ccCCCCEEeCcCCccceec
Confidence            8888888888877666553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.64  E-value=3.5e-16  Score=142.61  Aligned_cols=188  Identities=16%  Similarity=0.138  Sum_probs=147.0

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---------hCCCCCCeeeccC
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---------FGLSCLKSLKLAN  226 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---------~~l~~L~~L~l~~  226 (349)
                      +..+++|++|++++|.++.+++..|+++++|++|++++|.+..+++ +..+++|++|+         ...++|+.|++++
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~  108 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAAN  108 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEECTTCCEEECCS
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccCCCCcCEEECCC
Confidence            4556789999999999998876555999999999999998887776 88999999998         4457888888873


Q ss_pred             C-------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccc-cCCccccccc------ccccccc
Q 041418          227 E-------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVL-ETLPLLQKAD------FWTMGNA  282 (349)
Q Consensus       227 ~-------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l-~~l~~L~~L~------~~~~~~~  282 (349)
                      +       ..+++|+.|++++|          ..+++|+.|++++|.+...++..+ ..+++|++|+      .......
T Consensus       109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  188 (317)
T 3o53_A          109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV  188 (317)
T ss_dssp             SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC
T ss_pred             CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccccc
Confidence            2       55778999999888          346889999999999887665555 4678888887      1112223


Q ss_pred             cccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418          283 AMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       283 ~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~  348 (349)
                      .+++|+.|++++|. +..+|+.+..+++|+.|++++|.   +..+...+.....+..+.+.+|.++
T Consensus       189 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~---l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          189 VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK---LVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC---CCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             ccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc---ccchhhHhhcCCCCCEEEccCCCcc
Confidence            58899999999987 88888889999999999999987   2244445666677777888877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.63  E-value=2.9e-16  Score=142.85  Aligned_cols=163  Identities=17%  Similarity=0.078  Sum_probs=103.1

Q ss_pred             CCccc--CCCCCCCEEeecCCCCcccchhHHhcC-----cCCcEEeccCcCccccc-hhhhccccchhhhhCCCCCC---
Q 041418          152 YPSGI--ENLFLLRYLKLNIPSLKSLSSSLLSNL-----LNLYTLDMPFSYIDHTV-DEFWKMKKLRHLNFGLSCLK---  220 (349)
Q Consensus       152 lp~~i--~~l~~L~~L~l~~~~l~~lp~~if~~l-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~l~~L~---  220 (349)
                      +|..+  +.+++|++|++++|.++.+|..+ +.+     ++|++|++++|.+..+| ..++++++|++|+-.-.++.   
T Consensus       111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          111 APPPLLEATGPDLNILNLRNVSWATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             CCCCSSSCCSCCCSEEEEESCBCSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred             hHHHHHHhcCCCccEEEccCCCCcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence            45554  77788888888888887777655 666     78888888888777775 55666666665540000000   


Q ss_pred             ----eeeccCCCCCCCccEEEEccC-------------CCCCCccEEEEeecCCCCCC-cccccCCccccccc----ccc
Q 041418          221 ----SLKLANESKMPWLSKIVLAEY-------------LFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKAD----FWT  278 (349)
Q Consensus       221 ----~L~l~~~~~~~~L~~L~l~~~-------------~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~----~~~  278 (349)
                          .+.+   ..+++|+.|++++|             ..+++|+.|++++|.+.+.+ .+.+..+++|++|+    .+.
T Consensus       190 ~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          190 GLISALCP---LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             HHHHHSCT---TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             HHHHHHHh---ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence                0011   45677888888777             24578888888888887754 34555566666666    100


Q ss_pred             -cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          279 -MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       279 -~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                       .+...+++|+.|++++|. +..+|. +..+++|++|++++++
T Consensus       267 ~ip~~~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          267 QVPKGLPAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SCCSSCCSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred             hhhhhccCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence             011112567777777765 666665 6677777777777766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.63  E-value=2.5e-15  Score=146.00  Aligned_cols=60  Identities=12%  Similarity=0.187  Sum_probs=40.7

Q ss_pred             cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhc-ccccccccceeeeccccc
Q 041418          285 PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREF-EDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       285 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~-~~~i~~ip~i~~~~~~~~  348 (349)
                      ++|+.|++++|. +..+|.++..+++|++|++++|.   +..+... +....++..+.+.+|.++
T Consensus       421 ~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~---l~~l~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          421 PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ---LKSVPDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc---CCccCHHHhccCCcccEEECcCCCCc
Confidence            567777777775 66778777778888888888876   2234333 555666667777777653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.63  E-value=2.1e-15  Score=154.98  Aligned_cols=89  Identities=11%  Similarity=0.047  Sum_probs=48.5

Q ss_pred             CCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cc-ccccccccccceeee
Q 041418          231 PWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLII  292 (349)
Q Consensus       231 ~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l  292 (349)
                      ++|+.|++++|          ..+++|+.|++++|.+.+.+...++.+++|++|+       .. +...+.+++|+.|++
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  345 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL  345 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEEC
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEEC
Confidence            34555555554          3455566666666665555555555566666555       11 112234556666666


Q ss_pred             eccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418          293 NPCAYLKKMPE-HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       293 ~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  320 (349)
                      ++|. +..+|. .+..+++|+.|++++|.
T Consensus       346 ~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          346 QKNH-IAIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred             CCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence            6654 444443 35556666666666665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.63  E-value=2e-15  Score=149.58  Aligned_cols=94  Identities=18%  Similarity=0.120  Sum_probs=53.0

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-----------CC-cccCCCCCCCEEeecCCCCcccchhHHhcC
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-----------YP-SGIENLFLLRYLKLNIPSLKSLSSSLLSNL  183 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-----------lp-~~i~~l~~L~~L~l~~~~l~~lp~~if~~l  183 (349)
                      ..+++++|.|.+.++....    ..+..|.+++.|+           +| ..|+++++|++|++++|.++.+|+..|+++
T Consensus        72 f~~l~~L~~L~Ls~N~i~~----i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L  147 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQT----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL  147 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred             HhCCCCCCEEECCCCcCCC----cChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence            3455666666666655432    2222333333333           33 346666666666666666666665544666


Q ss_pred             cCCcEEeccCcCccc--cchhhhccccchhhh
Q 041418          184 LNLYTLDMPFSYIDH--TVDEFWKMKKLRHLN  213 (349)
Q Consensus       184 ~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~  213 (349)
                      ++|++|++++|.+..  +|..++.+++|++|+
T Consensus       148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  179 (635)
T 4g8a_A          148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  179 (635)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             cccCeeccccCccccCCCchhhccchhhhhhc
Confidence            666666666665543  355566666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=5.2e-16  Score=149.82  Aligned_cols=186  Identities=16%  Similarity=0.141  Sum_probs=146.2

Q ss_pred             CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---------hCCCCCCeeeccCC-
Q 041418          158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---------FGLSCLKSLKLANE-  227 (349)
Q Consensus       158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---------~~l~~L~~L~l~~~-  227 (349)
                      .+++|++|++++|.++.+|+..|+++++|++|++++|.+..+++ ++.+++|++|+         ...++|+.|+++++ 
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~  110 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN  110 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence            34489999999999998876545999999999999998887765 88999999998         34578888888732 


Q ss_pred             ------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCccccc-CCccccccc------ccccccccc
Q 041418          228 ------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLE-TLPLLQKAD------FWTMGNAAM  284 (349)
Q Consensus       228 ------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~------~~~~~~~~~  284 (349)
                            ..+++|+.|++++|          ..+++|+.|++++|.+++.++..+. .+++|+.|+      .-......+
T Consensus       111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l  190 (487)
T 3oja_A          111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVF  190 (487)
T ss_dssp             CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCC
T ss_pred             CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccC
Confidence                  55788999999888          4578899999999998886666665 788888888      111223458


Q ss_pred             cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418          285 PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       285 ~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~  348 (349)
                      ++|+.|++++|. +..+|+.++.+++|+.|++++|.   +..+...+.....+..+.+.+|.++
T Consensus       191 ~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~---l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          191 AKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK---LVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC---CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc---CcccchhhccCCCCCEEEcCCCCCc
Confidence            899999999987 88888889999999999999987   2234445556667777777777654

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.63  E-value=2.5e-17  Score=161.28  Aligned_cols=95  Identities=21%  Similarity=0.237  Sum_probs=81.2

Q ss_pred             HhhHHHHHhhhCCCCCCchhHHh-----------HhccCCCCceecHHHHHHHHHHc--CCCCC-----CHHHHHHHHHH
Q 041418            4 TMSLGLQCIIYCMSPFCLKPCFL-----------YFSVFPAHLEISTRHVYQLWIAE--GFIED-----NNEATAKKYLE   65 (349)
Q Consensus         4 ~~i~~~L~lSY~~L~~~lk~cFl-----------~~a~Fp~~~~i~~~~Li~~wia~--g~i~~-----~~~~~~~~~~~   65 (349)
                      ++|.++|++||++||+++|.||+           |||+||+|+.|+    +++|+|+  ||+..     +.+++++ ||+
T Consensus       361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~  435 (549)
T 2a5y_B          361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLK  435 (549)
T ss_dssp             STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHH
T ss_pred             HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHH
Confidence            45777899999999999999999           999999999999    8999999  99975     4788888 999


Q ss_pred             HHHhCCceeeeecCCCCceeeEEeChhHHHHHHHhhcccCc
Q 041418           66 QLINRGFVEANKRRAGGTINTCSIPGRCRPVLLGVASKVEF  106 (349)
Q Consensus        66 ~L~~~sll~~~~~~~~~~~~~~~mHdli~dla~~i~~~~~~  106 (349)
                      +|+++||++....+   ...+|+|||+||++|++++++++.
T Consensus       436 ~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          436 RLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            99999999987643   336799999999999999987765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=7.1e-15  Score=147.41  Aligned_cols=189  Identities=19%  Similarity=0.214  Sum_probs=109.0

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc----------------------------Ccccc-chhhhc
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS----------------------------YIDHT-VDEFWK  205 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~----------------------------~l~~l-p~~i~~  205 (349)
                      .++.+++|++|++++|.++.+++..|+++++|++|++++|                            .+..+ |..++.
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            4455566666666666665554443355555555555443                            33333 334555


Q ss_pred             cccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEccC------------CCCCCcc
Q 041418          206 MKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY------------LFPHSLT  248 (349)
Q Consensus       206 L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~------------~~~~~L~  248 (349)
                      +++|+.|+               ..+++|+.|+++++          ..+++|+.|+++++            ..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            66666655               34556666666521          34566777776665            3456788


Q ss_pred             EEEEeecCCCCCCcccccCCccccccc----ccc------------cccccccccceeeeeccCCCCCCCcc-cCCCCCC
Q 041418          249 HLSFSNTDRMDDPMPVLETLPLLQKAD----FWT------------MGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSL  311 (349)
Q Consensus       249 ~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~------------~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L  311 (349)
                      .|++++|.++..+...++.+++|+.|+    .+.            ...+.+++|+.|++++|. +..+|.. ++.+++|
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFEL  562 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCc
Confidence            888888887777666677777777777    110            002456777777777765 6677753 6777777


Q ss_pred             CEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418          312 NKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       312 ~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~  347 (349)
                      +.|++++|.   +..+.+ .+.....+..+.+.+|.+
T Consensus       563 ~~L~Ls~N~---l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          563 KIIDLGLNN---LNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             CEEECCSSC---CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             ceeECCCCC---CCcCCHhHhCCCCCCCEEECCCCcC
Confidence            777777765   122222 233444444444444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.62  E-value=7.4e-15  Score=140.61  Aligned_cols=53  Identities=21%  Similarity=0.197  Sum_probs=30.4

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  213 (349)
                      ++++++|++|++++|.++.+|  + +++++|++|++++|.++.+|  ++.+++|++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~  154 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLD--V-SQNPLLTYLNCARNTLTEID--VSHNTQLTELD  154 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCC--C-TTCTTCCEEECTTSCCSCCC--CTTCTTCCEEE
T ss_pred             cCCCCcCCEEECCCCcCCeec--C-CCCCcCCEEECCCCccceec--cccCCcCCEEE
Confidence            555666666666666666554  3 56666666666666555553  44555555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.62  E-value=1e-15  Score=138.97  Aligned_cols=176  Identities=14%  Similarity=0.058  Sum_probs=135.3

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCC
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPW  232 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~  232 (349)
                      ..++++|++|++++|.++.+| .+ ..+++|++|++++|.+..+|. +..+++|++|+   ..++.+..  +   ..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~---~~l~~  108 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSA--I---AGLQS  108 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGG--G---TTCTT
T ss_pred             HHHcCCcCEEEeeCCCccCch-hh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchh--h---cCCCC
Confidence            445788999999999999998 56 999999999999999999988 88888888887   22333322  2   67888


Q ss_pred             ccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCC
Q 041418          233 LSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYL  298 (349)
Q Consensus       233 L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l  298 (349)
                      |+.|++++|        ..+++|+.|++++|.+...+  .++.+++|+.|+      .-......+++|+.|++++|. +
T Consensus       109 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l  185 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-I  185 (308)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-C
T ss_pred             CCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCc-c
Confidence            899988888        67899999999999987654  388889999888      111224678999999999987 8


Q ss_pred             CCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418          299 KKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       299 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~  347 (349)
                      ..+|. +..+++|++|++++|.-   ..+. ......++..+.+.+|.+
T Consensus       186 ~~~~~-l~~l~~L~~L~L~~N~l---~~~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          186 SDISP-LASLPNLIEVHLKNNQI---SDVS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCCGG-GGGCTTCCEEECTTSCC---CBCG-GGTTCTTCCEEEEEEEEE
T ss_pred             CcChh-hcCCCCCCEEEccCCcc---Cccc-cccCCCCCCEEEccCCee
Confidence            88886 88999999999999972   1222 233444555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.60  E-value=6.6e-15  Score=132.53  Aligned_cols=183  Identities=18%  Similarity=0.148  Sum_probs=126.9

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccc-hhhhccccchhhhhCCCCCCeeeccCCCCCCCcc
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTV-DEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLS  234 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~  234 (349)
                      ++++++++.++++++.++.+|..+ .  +++++|++++|.++.++ ..+.++++|++|+-.-..+..+...  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~-~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC-C--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            566677777777777777777655 2  56777777777666663 4466666666555111222222221  4566677


Q ss_pred             EEEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccc-cccccccceeeeeccCC
Q 041418          235 KIVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMG-NAAMPKLECLIINPCAY  297 (349)
Q Consensus       235 ~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~-~~~~~~L~~L~l~~c~~  297 (349)
                      .|++++|         ..+++|+.|++++|.++..+...++.+++|+.|+       ..+.. ...+++|+.|++++|. 
T Consensus        81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-  159 (290)
T 1p9a_G           81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-  159 (290)
T ss_dssp             EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-
T ss_pred             EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-
Confidence            7777766         5688999999999999988888899999999998       22111 2457899999999987 


Q ss_pred             CCCCCcc-cCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418          298 LKKMPEH-LWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       298 l~~lp~~-l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~  347 (349)
                      +..+|.+ +..+++|+.|++++|.   +..+.........+..+.+.+|-+
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~---l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENS---LYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCccCHHHhcCcCCCCEEECCCCc---CCccChhhcccccCCeEEeCCCCc
Confidence            8889875 4779999999999987   224444444445666677776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=1.1e-14  Score=149.63  Aligned_cols=224  Identities=18%  Similarity=0.127  Sum_probs=142.4

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcc-cchh-HHh
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKS-LSSS-LLS  181 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~-lp~~-if~  181 (349)
                      ...++++|.|.+.++...   ....+..|.+++.|+            .|.+|+++++|++|++++|.++. +|.. .|+
T Consensus        44 ~~~l~~L~~LdLs~n~~~---~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           44 FPFLEQLQLLELGSQYTP---LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             CSSCCSCSEEEECTTCCC---CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred             CcccccCeEEeCCCCCCc---cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence            456777777777766332   112233444444444            46777778888888888777764 4443 227


Q ss_pred             cCcCCcEEeccCcCcccc--chhhhccccchhhh--------------hCC--CCCCeeeccCC----------CCCC--
Q 041418          182 NLLNLYTLDMPFSYIDHT--VDEFWKMKKLRHLN--------------FGL--SCLKSLKLANE----------SKMP--  231 (349)
Q Consensus       182 ~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~--------------~~l--~~L~~L~l~~~----------~~~~--  231 (349)
                      ++++|++|++++|.+..+  |..++++++|++|+              +.+  ++|+.|+++++          ..++  
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  200 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP  200 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCT
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCc
Confidence            777888888877766555  24577777777776              112  56666665511          1122  


Q ss_pred             ----CccEEEEccCC------------------------------------------------CCCCccEEEEeecCCCC
Q 041418          232 ----WLSKIVLAEYL------------------------------------------------FPHSLTHLSFSNTDRMD  259 (349)
Q Consensus       232 ----~L~~L~l~~~~------------------------------------------------~~~~L~~L~L~~~~l~~  259 (349)
                          .|+.|++++|.                                                ..++|+.|++++|.+..
T Consensus       201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~  280 (844)
T 3j0a_A          201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS  280 (844)
T ss_dssp             TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred             cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence                26666666550                                                12678899999998887


Q ss_pred             CCcccccCCccccccc-------cc-ccccccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecCCCHHHHHhhhh-
Q 041418          260 DPMPVLETLPLLQKAD-------FW-TMGNAAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWWPQPELRQKLRE-  329 (349)
Q Consensus       260 ~~~~~l~~l~~L~~L~-------~~-~~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~~~~~~~l~~-  329 (349)
                      .+...++.+++|+.|+       .. +...+.+++|+.|++++|. +..+ |..+..+++|+.|++++|.   +..+.. 
T Consensus       281 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~---i~~~~~~  356 (844)
T 3j0a_A          281 LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNH---IAIIQDQ  356 (844)
T ss_dssp             ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSCC---CCCCCSS
T ss_pred             cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCCC---CCccChh
Confidence            7777888888998888       11 1223567889999999987 5555 6678889999999999886   222222 


Q ss_pred             cccccccccceeeeccc
Q 041418          330 FEDKEQQIPNRQSTGEM  346 (349)
Q Consensus       330 ~~~~i~~ip~i~~~~~~  346 (349)
                      .+.....+..+.+.+|.
T Consensus       357 ~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          357 TFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             CSCSCCCCCEEEEETCC
T ss_pred             hhcCCCCCCEEECCCCC
Confidence            34444455555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.59  E-value=5.9e-15  Score=131.60  Aligned_cols=191  Identities=16%  Similarity=0.130  Sum_probs=139.7

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKM  230 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~  230 (349)
                      +|..+.  ++|++|++++|.++.+|...|+++++|++|++++|.++.+|. .+.++++|++|+-.-..+..+....-..+
T Consensus        22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (276)
T 2z62_A           22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (276)
T ss_dssp             CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence            666554  579999999999999887545999999999999999888875 57777777777622222333221000567


Q ss_pred             CCccEEEEccC----------CCCCCccEEEEeecCCCCCC-cccccCCccccccc-------ccc-cccccccccc---
Q 041418          231 PWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKAD-------FWT-MGNAAMPKLE---  288 (349)
Q Consensus       231 ~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~-------~~~-~~~~~~~~L~---  288 (349)
                      ++|+.|++++|          ..+++|+.|++++|.+.... +..++.+++|+.|+       .+. .....+++|+   
T Consensus       100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~  179 (276)
T 2z62_A          100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN  179 (276)
T ss_dssp             TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             ccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence            78888888877          56789999999999998754 57889999999998       111 1123455566   


Q ss_pred             -eeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeeccccc
Q 041418          289 -CLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       289 -~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~~  348 (349)
                       .|++++|. +..+|.......+|+.|++++|.   +..+.. .+.....+..+.+.+|.++
T Consensus       180 l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          180 LSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ---LKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             EEEECCSSC-CCEECTTSSCSCCEEEEECCSSC---CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             eeeecCCCc-ccccCccccCCCcccEEECCCCc---eeecCHhHhcccccccEEEccCCccc
Confidence             88999987 88888777777799999999987   233433 3466777778888877654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.59  E-value=7.5e-15  Score=144.15  Aligned_cols=87  Identities=20%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      ++++.|.+.++......    +..+.+++.|+            .|+.|+++++|++|++++|.++.+|..   .+++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~  124 (562)
T 3a79_B           52 PRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLR  124 (562)
T ss_dssp             TTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCS
T ss_pred             CCcCEEECCCCCccccC----hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCC
Confidence            78899998888775422    23444444444            467788888888888888888888874   788888


Q ss_pred             EEeccCcCccccc--hhhhccccchhhh
Q 041418          188 TLDMPFSYIDHTV--DEFWKMKKLRHLN  213 (349)
Q Consensus       188 ~L~l~~~~l~~lp--~~i~~L~~L~~L~  213 (349)
                      +|++++|.++.+|  ..++++++|++|+
T Consensus       125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~  152 (562)
T 3a79_B          125 HLDLSFNDFDVLPVCKEFGNLTKLTFLG  152 (562)
T ss_dssp             EEECCSSCCSBCCCCGGGGGCTTCCEEE
T ss_pred             EEECCCCCccccCchHhhcccCcccEEe
Confidence            8888888777754  6788888888887

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.59  E-value=1.8e-14  Score=128.29  Aligned_cols=169  Identities=22%  Similarity=0.212  Sum_probs=97.4

Q ss_pred             CCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc
Q 041418          117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI  196 (349)
Q Consensus       117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l  196 (349)
                      ..+++++.+.+.++...                  -.++++.+++|++|++++|.++.++ .+ +++++|++|++++|.+
T Consensus        38 ~~l~~L~~L~l~~~~i~------------------~~~~l~~l~~L~~L~l~~n~l~~~~-~l-~~l~~L~~L~L~~n~l   97 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIK------------------SVQGIQYLPNVRYLALGGNKLHDIS-AL-KELTNLTYLILTGNQL   97 (272)
T ss_dssp             HHHTTCCEEECTTSCCC------------------CCTTGGGCTTCCEEECTTSCCCCCG-GG-TTCTTCCEEECTTSCC
T ss_pred             ccccceeeeeeCCCCcc------------------cccccccCCCCcEEECCCCCCCCch-hh-cCCCCCCEEECCCCcc
Confidence            34567788877776554                  1234666777888888888777764 44 7778888888888877


Q ss_pred             cccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418          197 DHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD  275 (349)
Q Consensus       197 ~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~  275 (349)
                      +.+|.. ++++++|++|+-.-.++..+.-   .           ....+++|+.|++++|.+++.+...++.+++|+.|+
T Consensus        98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~-----------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           98 QSLPNGVFDKLTNLKELVLVENQLQSLPD---G-----------VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCT---T-----------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CccChhHhcCCcCCCEEECCCCcCCccCH---H-----------HhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence            777654 3444444444300011111100   0           002233444444444444433333344444444444


Q ss_pred             -------ccccc-cccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418          276 -------FWTMG-NAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       276 -------~~~~~-~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  320 (349)
                             ..... .+.+++|+.|++++|. +..+|+ .++.+++|+.|++++|+
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence                   11110 1467889999999987 666665 47889999999999876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.58  E-value=3.5e-15  Score=130.26  Aligned_cols=142  Identities=14%  Similarity=0.085  Sum_probs=81.8

Q ss_pred             ccCCCCCCCEEeecCCC-CcccchhHHhcCcCCcEEeccC-cCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418          155 GIENLFLLRYLKLNIPS-LKSLSSSLLSNLLNLYTLDMPF-SYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMP  231 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~-l~~lp~~if~~l~~L~~L~l~~-~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~  231 (349)
                      .++++++|++|++++|. ++.+|...|+++++|++|++++ |.++.+|. .+..+                        +
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l------------------------~  105 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL------------------------P  105 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC------------------------T
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC------------------------C
Confidence            45555555555555554 5555543335555555555555 45555543 23333                        3


Q ss_pred             CccEEEEccC--------CCCCCcc---EEEEeec-CCCCCCcccccCCcccc-ccc-------ccccccccccccceee
Q 041418          232 WLSKIVLAEY--------LFPHSLT---HLSFSNT-DRMDDPMPVLETLPLLQ-KAD-------FWTMGNAAMPKLECLI  291 (349)
Q Consensus       232 ~L~~L~l~~~--------~~~~~L~---~L~L~~~-~l~~~~~~~l~~l~~L~-~L~-------~~~~~~~~~~~L~~L~  291 (349)
                      +|+.|++++|        ..+++|+   .|++++| .++..+...+..+++|+ .|+       .++......++|+.|+
T Consensus       106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred             CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence            4444444443        2344444   7777777 66666656677777777 666       1111111225788888


Q ss_pred             eeccCCCCCCCc-ccCCC-CCCCEEEecCCC
Q 041418          292 INPCAYLKKMPE-HLWCI-KSLNKFDCWWPQ  320 (349)
Q Consensus       292 l~~c~~l~~lp~-~l~~l-~~L~~L~l~~~~  320 (349)
                      +++|+.++.+|. .+..+ ++|+.|++++++
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence            888755777764 46677 888888888876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.58  E-value=4.6e-15  Score=132.18  Aligned_cols=175  Identities=21%  Similarity=0.163  Sum_probs=120.9

Q ss_pred             CCCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc
Q 041418          115 EDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS  194 (349)
Q Consensus       115 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~  194 (349)
                      ....+++++.|.+.++....                  ++.++.+++|++|++++|.++.+|...|+++++|++|++++|
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~------------------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHD------------------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN  119 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCC------------------CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccCCCCcEEECCCCCCCC------------------chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence            34567889999998876652                  134667778888888888888777765577888888888888


Q ss_pred             Cccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcc
Q 041418          195 YIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMP  263 (349)
Q Consensus       195 ~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~  263 (349)
                      .++.+|.. ++.+++|++|+-.-.++..+.-..-..+++|+.|++++|          ..+++|+.|++++|.+.+.+..
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  199 (272)
T 3rfs_A          120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG  199 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH
Confidence            77777654 466666666651111222221000045667777777766          4578899999999998887777


Q ss_pred             cccCCccccccc----ccccccccccccceeeeeccCCCCCCCcccCCCCC
Q 041418          264 VLETLPLLQKAD----FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKS  310 (349)
Q Consensus       264 ~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~  310 (349)
                      .++.+++|+.|+    .|.   +.+++|+.++++.|...+.+|.+++.++.
T Consensus       200 ~~~~l~~L~~L~l~~N~~~---~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          200 VFDRLTSLQYIWLHDNPWD---CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTTCTTCCEEECCSSCBC---CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHhCCcCCCEEEccCCCcc---ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            788888888877    232   45778888888888877788887776654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=4e-15  Score=145.93  Aligned_cols=77  Identities=17%  Similarity=0.106  Sum_probs=33.4

Q ss_pred             CCCccEEEEeecCCCCCCcccccCCccccccc----c-----cccccccccccceeeeeccCCCCCCCcccCCCCCCCEE
Q 041418          244 PHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----F-----WTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKF  314 (349)
Q Consensus       244 ~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~-----~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  314 (349)
                      +++|+.|++++|.+....+..++.+++|+.|+    .     .+...+.+++|+.|++++|...+..|..++.+++|++|
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            34455555555544444444444444454444    0     11112234445555555544222224444445555555


Q ss_pred             EecCCC
Q 041418          315 DCWWPQ  320 (349)
Q Consensus       315 ~l~~~~  320 (349)
                      ++++|.
T Consensus       500 ~l~~n~  505 (570)
T 2z63_A          500 NMASNQ  505 (570)
T ss_dssp             ECCSSC
T ss_pred             eCCCCc
Confidence            555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.56  E-value=1.5e-14  Score=128.60  Aligned_cols=176  Identities=19%  Similarity=0.160  Sum_probs=126.5

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhhhCCCCCCeeeccCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLNFGLSCLKSLKLANESKM  230 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~~~l~~L~~L~l~~~~~~  230 (349)
                      +|..+.  +++++|++++|.++.+|...|+++++|++|++++|.++.+|..+ .+++          +|++|++++    
T Consensus        31 ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~----------~L~~L~l~~----   94 (270)
T 2o6q_A           31 IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK----------NLETLWVTD----   94 (270)
T ss_dssp             CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT----------TCCEEECCS----
T ss_pred             cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC----------CCCEEECCC----
Confidence            555444  57999999999999888755589999999999999888888764 4344          344444420    


Q ss_pred             CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccc-cccccccceeeeeccCCCCCCC
Q 041418          231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMG-NAAMPKLECLIINPCAYLKKMP  302 (349)
Q Consensus       231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~-~~~~~~L~~L~l~~c~~l~~lp  302 (349)
                      ..+..+.......+++|+.|++++|.++..+...++.+++|++|+       ..+.. .+.+++|+.|++++|. +..+|
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~  173 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVP  173 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeC
Confidence            111111111115678999999999999988888899999999998       22211 2567899999999987 77777


Q ss_pred             cc-cCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418          303 EH-LWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       303 ~~-l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~  347 (349)
                      .. +..+++|++|++++|.   +..+.. .+..+..+..+.+.+|.+
T Consensus       174 ~~~~~~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQ---LKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSC---CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhHhccCCCcCEEECCCCc---CCcCCHHHhccccCCCEEEecCCCe
Confidence            64 7889999999999987   223333 355666777777777754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.55  E-value=5.7e-14  Score=139.01  Aligned_cols=181  Identities=16%  Similarity=0.049  Sum_probs=113.4

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEec
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDM  191 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l  191 (349)
                      ++++.|.+.++....++.     .+.+++.|.        +|.   .+++|++|++++|.++.+|.    .+++|++|++
T Consensus        61 ~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEEC
Confidence            688999998887754322     345555555        444   56778888888887777765    3455666666


Q ss_pred             cCcCccccchhhhccccchhhh------------------------------hCCCCCCeeeccCC------CCCCCccE
Q 041418          192 PFSYIDHTVDEFWKMKKLRHLN------------------------------FGLSCLKSLKLANE------SKMPWLSK  235 (349)
Q Consensus       192 ~~~~l~~lp~~i~~L~~L~~L~------------------------------~~l~~L~~L~l~~~------~~~~~L~~  235 (349)
                      ++|.++.+|..+   ++|++|+                              ..+++|+.|+++++      ..+++|+.
T Consensus       129 ~~N~l~~lp~~l---~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~  205 (622)
T 3g06_A          129 FGNQLTSLPVLP---PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYK  205 (622)
T ss_dssp             CSSCCSCCCCCC---TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             CCCCCCcCCCCC---CCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhE
Confidence            666665555432   4444444                              11244555555421      23445666


Q ss_pred             EEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccccccccccccceeeeeccCCCCCCCccc
Q 041418          236 IVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWTMGNAAMPKLECLIINPCAYLKKMPEHL  305 (349)
Q Consensus       236 L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l  305 (349)
                      |++++|      ..+++|+.|++++|.++..+    ..+++|+.|+    .+..-...+++|+.|++++|. +..+|..+
T Consensus       206 L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l  280 (622)
T 3g06_A          206 LWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ-LTRLPESL  280 (622)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CCSCCGGG
T ss_pred             EECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCcccccCcEEeCCCCC-CCcCCHHH
Confidence            666555      33466777777777776543    3456666666    111001256788888888886 77888888


Q ss_pred             CCCCCCCEEEecCCC
Q 041418          306 WCIKSLNKFDCWWPQ  320 (349)
Q Consensus       306 ~~l~~L~~L~l~~~~  320 (349)
                      ..+++|+.|++++|+
T Consensus       281 ~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          281 IHLSSETTVNLEGNP  295 (622)
T ss_dssp             GGSCTTCEEECCSCC
T ss_pred             hhccccCEEEecCCC
Confidence            888999999998887

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.55  E-value=7.6e-15  Score=132.19  Aligned_cols=159  Identities=21%  Similarity=0.256  Sum_probs=103.1

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY  195 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~  195 (349)
                      ...+++++.+.+.++....                 + +.++.+++|++|++++|.++.++. + +++++|++|++++|.
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-----------------~-~~~~~l~~L~~L~L~~n~l~~~~~-l-~~l~~L~~L~l~~n~  101 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-----------------V-QGIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENK  101 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-----------------C-TTGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSC
T ss_pred             hhhcCcccEEEccCCCccc-----------------C-hhHhcCCCCCEEEccCCccCCCcc-c-ccCCCCCEEECCCCc
Confidence            3445667777776655542                 2 247778889999999999888877 5 889999999999998


Q ss_pred             ccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCccc
Q 041418          196 IDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPV  264 (349)
Q Consensus       196 l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~  264 (349)
                      ++.+|. ++.+++|++|+   ..+..+..+     ..+++|+.|++++|        ..+++|+.|++++|.+.+.+   
T Consensus       102 l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l-----~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~---  172 (291)
T 1h6t_A          102 VKDLSS-LKDLKKLKSLSLEHNGISDINGL-----VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV---  172 (291)
T ss_dssp             CCCGGG-GTTCTTCCEEECTTSCCCCCGGG-----GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---
T ss_pred             CCCChh-hccCCCCCEEECCCCcCCCChhh-----cCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch---
Confidence            888765 66666555554   111111111     33444444444444        33445555555555544322   


Q ss_pred             ccCCcccccccccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          265 LETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       265 l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                                     ....+++|+.|++++|. +..+|. +..+++|+.|++++|+
T Consensus       173 ---------------~l~~l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          173 ---------------PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             ---------------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             ---------------hhcCCCccCEEECCCCc-CCCChh-hccCCCCCEEECcCCc
Confidence                           12567788888888876 777775 8888888888888875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.54  E-value=3.2e-14  Score=139.02  Aligned_cols=184  Identities=12%  Similarity=0.065  Sum_probs=136.4

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT  199 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l  199 (349)
                      ++++.|.+.++....        .        .|..++++++|++|++++|.++.+|+..|+++++|++|++++|.+..+
T Consensus        26 ~~L~~L~Ls~n~l~~--------~--------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~   89 (549)
T 2z81_A           26 AAMKSLDLSFNKITY--------I--------GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL   89 (549)
T ss_dssp             TTCCEEECCSSCCCE--------E--------CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred             CCccEEECcCCccCc--------c--------ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence            578888877765531        0        356789999999999999999988765559999999999999988888


Q ss_pred             chh-hhccccchhhhhCCCCCCeeeccCC-CCCCCccEEEEccC-----------CCCCCccEEEEeecCCCCCCccccc
Q 041418          200 VDE-FWKMKKLRHLNFGLSCLKSLKLANE-SKMPWLSKIVLAEY-----------LFPHSLTHLSFSNTDRMDDPMPVLE  266 (349)
Q Consensus       200 p~~-i~~L~~L~~L~~~l~~L~~L~l~~~-~~~~~L~~L~l~~~-----------~~~~~L~~L~L~~~~l~~~~~~~l~  266 (349)
                      |+. ++++++|++|+-.-..+..+..... ..+++|+.|++++|           ..+++|+.|++++|.+.+..+..++
T Consensus        90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A           90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            776 8888888888711112222111000 56788888888876           5578899999999999887778899


Q ss_pred             CCccccccc----c---ccc-ccccccccceeeeeccCCCCCCC---c-ccCCCCCCCEEEecCCC
Q 041418          267 TLPLLQKAD----F---WTM-GNAAMPKLECLIINPCAYLKKMP---E-HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       267 ~l~~L~~L~----~---~~~-~~~~~~~L~~L~l~~c~~l~~lp---~-~l~~l~~L~~L~l~~~~  320 (349)
                      .+++|+.|+    .   .+. ..+.+++|+.|++++|. +..++   . ....+++|+.|+++++.
T Consensus       170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             ccccCceEecccCcccccchhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceeccccc
Confidence            999999887    1   000 01347899999999987 55542   1 13457888899888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=5.3e-14  Score=123.74  Aligned_cols=61  Identities=15%  Similarity=0.204  Sum_probs=44.8

Q ss_pred             CCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418          243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  320 (349)
                      .+++|+.|++++|.+...+...+                +.+++|+.|++++|. +..+|+ .+..+++|+.|++++|+
T Consensus       129 ~l~~L~~L~Ls~N~l~~~~~~~~----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          129 RLTKLKELRLNTNQLQSIPAGAF----------------DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cCCcccEEECcCCcCCccCHHHc----------------CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence            45666666666666654443222                457889999999987 777765 58889999999999977

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.52  E-value=4.6e-14  Score=123.11  Aligned_cols=182  Identities=12%  Similarity=0.067  Sum_probs=112.1

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CC-cccCCCCCCCEEeecC-CCCcccchhHHhcCcC
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YP-SGIENLFLLRYLKLNI-PSLKSLSSSLLSNLLN  185 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp-~~i~~l~~L~~L~l~~-~~l~~lp~~if~~l~~  185 (349)
                      ++++.|.+.++.....+    ...+.++..|+            +| ..++++++|++|++++ |.++.+|...|+++++
T Consensus        31 ~~l~~L~l~~n~l~~i~----~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP----SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCCSEEC----TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             CcccEEEEeCCcceEEC----HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            46778887777664322    22333333333            33 4688999999999998 9999999776699999


Q ss_pred             CcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCCCCCCcc-EEEEeecCCCCCCccc
Q 041418          186 LYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLT-HLSFSNTDRMDDPMPV  264 (349)
Q Consensus       186 L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~-~L~L~~~~l~~~~~~~  264 (349)
                      |++|++++|.++.+|. ++.+++|+.       |+.|+++   ..+.++.+.-.....+++|+ .|++++|.++..+...
T Consensus       107 L~~L~l~~n~l~~lp~-~~~l~~L~~-------L~~L~l~---~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~  175 (239)
T 2xwt_C          107 LKFLGIFNTGLKMFPD-LTKVYSTDI-------FFILEIT---DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA  175 (239)
T ss_dssp             CCEEEEEEECCCSCCC-CTTCCBCCS-------EEEEEEE---SCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred             CCEEeCCCCCCccccc-ccccccccc-------ccEEECC---CCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence            9999999999999997 776665551       1233331   11122222110002344444 4555554444333222


Q ss_pred             ccCCccccccc---c--c---c-cccccc-cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          265 LETLPLLQKAD---F--W---T-MGNAAM-PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       265 l~~l~~L~~L~---~--~---~-~~~~~~-~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      +.. ++|+.|+   .  .   . ...+.+ ++|+.|++++|. +..+|..  .+++|+.|++.++.
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred             cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence            222 3444443   0  0   0 011346 889999999977 8899874  78999999999876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.52  E-value=1.8e-13  Score=135.39  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=49.8

Q ss_pred             CCCCCeeeccCC------CCCCCccEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------c
Q 041418          216 LSCLKSLKLANE------SKMPWLSKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------F  276 (349)
Q Consensus       216 l~~L~~L~l~~~------~~~~~L~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~  276 (349)
                      +++|+.|+++++      ..+++|+.|++++|      ..+++|+.|++++|.++..+.    .+++|+.|+       .
T Consensus       200 ~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~  275 (622)
T 3g06_A          200 PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR  275 (622)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS
T ss_pred             cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc
Confidence            455666666522      23466777777776      445677777777777765442    445566655       2


Q ss_pred             cccccccccccceeeeeccCCCCCCCc
Q 041418          277 WTMGNAAMPKLECLIINPCAYLKKMPE  303 (349)
Q Consensus       277 ~~~~~~~~~~L~~L~l~~c~~l~~lp~  303 (349)
                      ++...+.+++|+.|++++|+..+..|.
T Consensus       276 lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          276 LPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CCHHHhhccccCEEEecCCCCCCcCHH
Confidence            333335667777777777764444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=8.7e-14  Score=133.07  Aligned_cols=188  Identities=20%  Similarity=0.145  Sum_probs=123.9

Q ss_pred             CCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCC-------------CEEeecCCC
Q 041418          117 DYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLL-------------RYLKLNIPS  171 (349)
Q Consensus       117 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L-------------~~L~l~~~~  171 (349)
                      .+.+.+|.+.+.++...     .++..+++++.|+            +|.+++++++|             ++|++++|.
T Consensus         8 ~~~~~L~~L~l~~n~l~-----~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~   82 (454)
T 1jl5_A            8 VSNTFLQEPLRHSSNLT-----EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG   82 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred             cccccchhhhcccCchh-----hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence            34577888888777663     2344556666666            89999988875             999999999


Q ss_pred             CcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---------hCC-CCCCeeeccCC--------CCCCCc
Q 041418          172 LKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---------FGL-SCLKSLKLANE--------SKMPWL  233 (349)
Q Consensus       172 l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---------~~l-~~L~~L~l~~~--------~~~~~L  233 (349)
                      ++.+|..    .++|++|++++|.++.+|..+   ++|++|+         ..+ ++|++|+++++        ..+++|
T Consensus        83 l~~lp~~----~~~L~~L~l~~n~l~~lp~~~---~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L  155 (454)
T 1jl5_A           83 LSSLPEL----PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFL  155 (454)
T ss_dssp             CSCCCSC----CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTC
T ss_pred             cccCCCC----cCCCCEEEccCCcCCcccccc---CCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCC
Confidence            9988862    478999999999888888643   5666665         122 57888887622        567889


Q ss_pred             cEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccccc----ccccccccccccceeeeeccCCCCCCCc
Q 041418          234 SKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD----FWTMGNAAMPKLECLIINPCAYLKKMPE  303 (349)
Q Consensus       234 ~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~----~~~~~~~~~~~L~~L~l~~c~~l~~lp~  303 (349)
                      +.|++++|      ....+|+.|++++|.+.+.+  .++.+++|+.|+    .+..-....++|+.|++++|. +..+|.
T Consensus       156 ~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~-l~~lp~  232 (454)
T 1jl5_A          156 KIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNI-LEELPE  232 (454)
T ss_dssp             CEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSC-CSSCCC
T ss_pred             CEEECCCCcCcccCCCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCc-CCcccc
Confidence            99999988      34568999999999988743  688899999887    111101234689999999986 778885


Q ss_pred             ccCCCCCCCEEEecCCC
Q 041418          304 HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       304 ~l~~l~~L~~L~l~~~~  320 (349)
                       ++.+++|++|++++|.
T Consensus       233 -~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          233 -LQNLPFLTTIYADNNL  248 (454)
T ss_dssp             -CTTCTTCCEEECCSSC
T ss_pred             -cCCCCCCCEEECCCCc
Confidence             8899999999998876

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.51  E-value=2.7e-14  Score=141.07  Aligned_cols=138  Identities=25%  Similarity=0.278  Sum_probs=87.7

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCC
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMP  231 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~  231 (349)
                      .++.+++|+.|+|++|.++.+|+ + +.+++|+.|+|++|.+..+| .+..+++|++|+   ..+..+..  +   ..++
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~--l---~~l~  131 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP-L-TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDING--L---VHLP  131 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG-G-GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGG--G---GGCT
T ss_pred             HHccCCCCCEEEeeCCCCCCChh-h-ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCcc--c---cCCC
Confidence            57778888888888888887776 4 88888888888888777766 466555555554   11111111  1   3344


Q ss_pred             CccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc
Q 041418          232 WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE  303 (349)
Q Consensus       232 ~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~  303 (349)
                      +|+.|++++|        ..+++|+.|+|++|.+.+.++                  ...+++|+.|+|++|. +..+|.
T Consensus       132 ~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~------------------l~~l~~L~~L~Ls~N~-i~~l~~  192 (605)
T 1m9s_A          132 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP------------------LAGLTKLQNLYLSKNH-ISDLRA  192 (605)
T ss_dssp             TCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG------------------GTTCTTCCEEECCSSC-CCBCGG
T ss_pred             ccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh------------------hccCCCCCEEECcCCC-CCCChH
Confidence            4444444444        334455555555554443221                  2567788888888876 677764


Q ss_pred             ccCCCCCCCEEEecCCC
Q 041418          304 HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       304 ~l~~l~~L~~L~l~~~~  320 (349)
                       +..+++|+.|++++|+
T Consensus       193 -l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          193 -LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             -GTTCTTCSEEECCSEE
T ss_pred             -HccCCCCCEEEccCCc
Confidence             7888888888888775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.51  E-value=1.2e-13  Score=132.05  Aligned_cols=54  Identities=19%  Similarity=0.194  Sum_probs=29.4

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  213 (349)
                      +++++++|++|++++|.++.+|...    .+|++|++++|.++.+|. ++.+++|++|+
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~l~~~~----~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~  243 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAGNNILEELPE-LQNLPFLTTIY  243 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCCCC----TTCCEEECCSSCCSSCCC-CTTCTTCCEEE
T ss_pred             cccCCCCCCEEECCCCcCCcCCCCc----CcccEEECcCCcCCcccc-cCCCCCCCEEE
Confidence            3555555555555555555554321    355555555555555553 55566666555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.49  E-value=5e-14  Score=119.26  Aligned_cols=138  Identities=14%  Similarity=0.106  Sum_probs=75.7

Q ss_pred             CCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCe---eeccCCCCCCCc
Q 041418          157 ENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKS---LKLANESKMPWL  233 (349)
Q Consensus       157 ~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~---L~l~~~~~~~~L  233 (349)
                      +.+++|++|++++|.++.+| .+ ..+++|++|++++|.+..+| .+..+++|++|+-.-..+..   -.+   ..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNL---SGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCC---TTCTTC
T ss_pred             hhcCCccEEeccCCCccChH-HH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhh---cCCCCC
Confidence            44556666666666666666 44 66666666666666555443 34444433333200000000   000   223334


Q ss_pred             cEEEEccC----------CCCCCccEEEEeecC-CCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCC
Q 041418          234 SKIVLAEY----------LFPHSLTHLSFSNTD-RMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMP  302 (349)
Q Consensus       234 ~~L~l~~~----------~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp  302 (349)
                      +.|++++|          ..+++|+.|++++|. +...+                  ....+++|+.|++++|. +..+|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~------------------~l~~l~~L~~L~l~~n~-i~~~~  175 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM------------------PLKTLPELKSLNIQFDG-VHDYR  175 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG------------------GGGGCSSCCEEECTTBC-CCCCT
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH------------------hhcCCCCCCEEECCCCC-CcChH
Confidence            44444433          445556666666555 32211                  12467788888888887 77777


Q ss_pred             cccCCCCCCCEEEecCCC
Q 041418          303 EHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       303 ~~l~~l~~L~~L~l~~~~  320 (349)
                       .+..+++|+.|++++++
T Consensus       176 -~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          176 -GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             -TGGGCSSCCEEEECBC-
T ss_pred             -HhccCCCCCEEEeeCcc
Confidence             58888899999998887

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.49  E-value=2.3e-15  Score=136.83  Aligned_cols=187  Identities=19%  Similarity=0.116  Sum_probs=136.9

Q ss_pred             CCcccC-------CCCCCCEEeecCCCCc-ccchhHH-hcCcCCcEEeccCcCccccchhhhcc-----ccchhhh---h
Q 041418          152 YPSGIE-------NLFLLRYLKLNIPSLK-SLSSSLL-SNLLNLYTLDMPFSYIDHTVDEFWKM-----KKLRHLN---F  214 (349)
Q Consensus       152 lp~~i~-------~l~~L~~L~l~~~~l~-~lp~~if-~~l~~L~~L~l~~~~l~~lp~~i~~L-----~~L~~L~---~  214 (349)
                      +|..+.       ++++|++|++++|.++ .+|..+| +.+++|++|++++|.++.+|..++.+     ++|++|+   .
T Consensus        80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N  159 (312)
T 1wwl_A           80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA  159 (312)
T ss_dssp             CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred             cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence            566555       7999999999999998 6887654 78999999999999988888888777     6666665   1


Q ss_pred             CCCCCCeeeccCCCCCCCccEEEEccC--------------CCCCCccEEEEeecCCCCC---CcccccCCccccccc--
Q 041418          215 GLSCLKSLKLANESKMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDD---PMPVLETLPLLQKAD--  275 (349)
Q Consensus       215 ~l~~L~~L~l~~~~~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~---~~~~l~~l~~L~~L~--  275 (349)
                      .+..+..=.+   ..+++|+.|++++|              ..+++|+.|++++|.++..   +...+..+++|+.|+  
T Consensus       160 ~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          160 HSLNFSCEQV---RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS  236 (312)
T ss_dssp             SCCCCCTTTC---CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred             CCccchHHHh---ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence            1111110011   56778888888877              4678999999999998742   223345778888888  


Q ss_pred             -----ccc--cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418          276 -----FWT--MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       276 -----~~~--~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~  348 (349)
                           ...  .....+++|+.|++++|. ++.+|.++.  ++|++|++++|.   +..+ +.+..+.++..+.+.+|.++
T Consensus       237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~---l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          237 HNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR---LDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             TSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC---CCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             CCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC---CCCC-hhHhhCCCCCEEeccCCCCC
Confidence                 111  112346899999999987 789998776  899999999987   2333 33666677778888888765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.48  E-value=4.3e-14  Score=129.42  Aligned_cols=38  Identities=16%  Similarity=0.119  Sum_probs=25.8

Q ss_pred             ccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecCC
Q 041418          282 AAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWWP  319 (349)
Q Consensus       282 ~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~  319 (349)
                      +.+++|+.|++++|..+..- ...++.+++|+.|++++|
T Consensus       244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            45678888888888622111 113677888888888887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.47  E-value=2.1e-13  Score=123.73  Aligned_cols=166  Identities=14%  Similarity=0.044  Sum_probs=87.9

Q ss_pred             CCccc--CCCCCCCEEeecCCCCcc-cc----hhHHhcCcCCcEEeccCcCccccc-hhhhccccchhhhhCCCCCCe--
Q 041418          152 YPSGI--ENLFLLRYLKLNIPSLKS-LS----SSLLSNLLNLYTLDMPFSYIDHTV-DEFWKMKKLRHLNFGLSCLKS--  221 (349)
Q Consensus       152 lp~~i--~~l~~L~~L~l~~~~l~~-lp----~~if~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~l~~L~~--  221 (349)
                      .|..+  +.+++|++|++++|.++. .|    ..+ ..+++|++|++++|.+..+| ..++.+++|++|+-.-.++..  
T Consensus       107 ~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  185 (310)
T 4glp_A          107 MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGER  185 (310)
T ss_dssp             CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred             hhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccch
Confidence            44555  677777777777777764 22    222 46777777777777666664 345555555555400000000  


Q ss_pred             -eeccC-CCCCCCccEEEEccC-------------CCCCCccEEEEeecCCCCCCcccccCC---ccccccc----cc-c
Q 041418          222 -LKLAN-ESKMPWLSKIVLAEY-------------LFPHSLTHLSFSNTDRMDDPMPVLETL---PLLQKAD----FW-T  278 (349)
Q Consensus       222 -L~l~~-~~~~~~L~~L~l~~~-------------~~~~~L~~L~L~~~~l~~~~~~~l~~l---~~L~~L~----~~-~  278 (349)
                       +.... -..+++|++|++++|             ..+++|++|++++|.+.+..++.+..+   ++|++|+    .+ .
T Consensus       186 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~  265 (310)
T 4glp_A          186 GLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ  265 (310)
T ss_dssp             HHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS
T ss_pred             hhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc
Confidence             00000 024455666666655             234777788888887776544444443   3444444    00 0


Q ss_pred             cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          279 MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       279 ~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      .+.+.+++|+.|++++|. +..+|. +..+++|+.|++++|+
T Consensus       266 lp~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          266 VPKGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCSCCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred             hhhhhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence            011123556666666655 555554 5556666666666655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.46  E-value=1e-13  Score=118.24  Aligned_cols=132  Identities=17%  Similarity=0.105  Sum_probs=90.0

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCc
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWL  233 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L  233 (349)
                      .++.+++|++|++++|.++.+|...|+.+++|++|++++|.++.+|.. ++.++                        +|
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------------------------~L  102 (208)
T 2o6s_A           47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT------------------------QL  102 (208)
T ss_dssp             TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------------------------TC
T ss_pred             hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc------------------------CC
Confidence            356666777777777777666665556677777777777766666543 23333                        33


Q ss_pred             cEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-ccccccccccccceeeeeccCCCCCCC
Q 041418          234 SKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-FWTMGNAAMPKLECLIINPCAYLKKMP  302 (349)
Q Consensus       234 ~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-~~~~~~~~~~~L~~L~l~~c~~l~~lp  302 (349)
                      +.|++++|          ..+++|+.|++++|.+++.+...+..+++|+.|+ ..-.-.+.+++|+.|+++.|...+.+|
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBB
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceee
Confidence            33333333          4578899999999998877777788888888887 111112567889999999988888999


Q ss_pred             cccCCCCC
Q 041418          303 EHLWCIKS  310 (349)
Q Consensus       303 ~~l~~l~~  310 (349)
                      .+++.++.
T Consensus       183 ~~~~~l~~  190 (208)
T 2o6s_A          183 NSAGSVAP  190 (208)
T ss_dssp             CTTSSBCT
T ss_pred             ccCccccC
Confidence            88887765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.46  E-value=2.8e-13  Score=119.13  Aligned_cols=161  Identities=22%  Similarity=0.242  Sum_probs=110.6

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKM  230 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~  230 (349)
                      +|..+.  +++++|++++|.++.++...|+++++|++|++++|.++.+++. +..++          +|+.|++++    
T Consensus        29 ~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~----------~L~~L~L~~----   92 (251)
T 3m19_A           29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT----------ELGTLGLAN----   92 (251)
T ss_dssp             CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT----------TCCEEECTT----
T ss_pred             cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC----------cCCEEECCC----
Confidence            565554  5788999999988887775558899999999999988777654 44433          333333320    


Q ss_pred             CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCC
Q 041418          231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIK  309 (349)
Q Consensus       231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~  309 (349)
                      ..+..+.......+++|+.|++++|.++..+...+                +.+++|+.|++++|. +..+|+ .++.++
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~  155 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVF----------------DRLTKLKELRLNTNQ-LQSIPAGAFDKLT  155 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHh----------------ccCCcccEEECcCCc-CCccCHHHcCcCc
Confidence            11111110000456788888888888776554333                457889999999986 788877 588999


Q ss_pred             CCCEEEecCCCHHHHHhhhh-cccccccccceeeeccccc
Q 041418          310 SLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       310 ~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~~  348 (349)
                      +|+.|++++|.   +..+.+ .+..+.++..+.+.+|.++
T Consensus       156 ~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          156 NLQTLSLSTNQ---LQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TCCEEECCSSC---CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCEEECCCCc---CCccCHHHHhCCCCCCEEEeeCCcee
Confidence            99999999997   223433 5666777888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.45  E-value=2.9e-14  Score=136.18  Aligned_cols=168  Identities=15%  Similarity=0.127  Sum_probs=120.5

Q ss_pred             CCcccCCCCCCCEEeecCCCCcc-cchhHHhcCc----CCcEEeccCcCcc-----ccchhhhccccchhhh--------
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKS-LSSSLLSNLL----NLYTLDMPFSYID-----HTVDEFWKMKKLRHLN--------  213 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~-lp~~if~~l~----~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~--------  213 (349)
                      +|..+..+++|++|++++|.++. -+..++..+.    +|++|++++|.++     .+|..+.++++|++|+        
T Consensus        48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            34567778888899998888874 2344434566    6888888888766     4677788888888887        


Q ss_pred             -----------hCCCCCCeeeccCC--------------CCCCCccEEEEccC---------------CCCCCccEEEEe
Q 041418          214 -----------FGLSCLKSLKLANE--------------SKMPWLSKIVLAEY---------------LFPHSLTHLSFS  253 (349)
Q Consensus       214 -----------~~l~~L~~L~l~~~--------------~~~~~L~~L~l~~~---------------~~~~~L~~L~L~  253 (349)
                                 ...++|++|++++.              ..+++|+.|++++|               ...++|+.|+++
T Consensus       128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  207 (461)
T 1z7x_W          128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE  207 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEcc
Confidence                       12457999988722              34689999999988               135689999999


Q ss_pred             ecCCCCCC----cccccCCccccccc----ccc--------c-ccccccccceeeeeccCCCCC-----CCcccCCCCCC
Q 041418          254 NTDRMDDP----MPVLETLPLLQKAD----FWT--------M-GNAAMPKLECLIINPCAYLKK-----MPEHLWCIKSL  311 (349)
Q Consensus       254 ~~~l~~~~----~~~l~~l~~L~~L~----~~~--------~-~~~~~~~L~~L~l~~c~~l~~-----lp~~l~~l~~L  311 (349)
                      +|.++...    ...+..+++|+.|+    .+.        . ....+++|+.|++++|. ++.     +|..+..+++|
T Consensus       208 ~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L  286 (461)
T 1z7x_W          208 SCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESL  286 (461)
T ss_dssp             TSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTC
T ss_pred             CCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCc
Confidence            99887653    34556678888887    100        0 00136789999999886 665     66667778889


Q ss_pred             CEEEecCCC
Q 041418          312 NKFDCWWPQ  320 (349)
Q Consensus       312 ~~L~l~~~~  320 (349)
                      ++|++++|.
T Consensus       287 ~~L~Ls~n~  295 (461)
T 1z7x_W          287 KELSLAGNE  295 (461)
T ss_dssp             CEEECTTCC
T ss_pred             ceEECCCCC
Confidence            999998887

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.43  E-value=3.7e-13  Score=121.11  Aligned_cols=146  Identities=20%  Similarity=0.202  Sum_probs=108.7

Q ss_pred             cCcCCCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEec
Q 041418          112 MDIEDDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDM  191 (349)
Q Consensus       112 ~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l  191 (349)
                      .+.....+++++.|.+.++....                 ++. ++.+++|++|++++|.++.+|. + +.+++|++|++
T Consensus        60 ~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~-l~~l~~L~~L~l~~n~l~~~~~-l-~~l~~L~~L~L  119 (291)
T 1h6t_A           60 SVQGIQYLPNVTKLFLNGNKLTD-----------------IKP-LANLKNLGWLFLDENKVKDLSS-L-KDLKKLKSLSL  119 (291)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCC-----------------CGG-GTTCTTCCEEECCSSCCCCGGG-G-TTCTTCCEEEC
T ss_pred             cChhHhcCCCCCEEEccCCccCC-----------------Ccc-cccCCCCCEEECCCCcCCCChh-h-ccCCCCCEEEC
Confidence            34445667889999988876652                 333 7889999999999999999876 5 99999999999


Q ss_pred             cCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCC
Q 041418          192 PFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDD  260 (349)
Q Consensus       192 ~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~  260 (349)
                      ++|.++.+| .+..+++|++|+   ..++.+..+     ..+++|+.|++++|        ..+++|+.|++++|.++..
T Consensus       120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l-----~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          120 EHNGISDIN-GLVHLPQLESLYLGNNKITDITVL-----SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGG-----GGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhh-----ccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCC
Confidence            999998885 588888888876   223333222     56788888888888        6789999999999998753


Q ss_pred             CcccccCCcccccccccccccccccccceeeeeccCCCCCCC
Q 041418          261 PMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMP  302 (349)
Q Consensus       261 ~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp  302 (349)
                      +  .+.                .+++|+.|++++|+ +...|
T Consensus       194 ~--~l~----------------~l~~L~~L~l~~n~-i~~~~  216 (291)
T 1h6t_A          194 R--ALA----------------GLKNLDVLELFSQE-CLNKP  216 (291)
T ss_dssp             G--GGT----------------TCTTCSEEEEEEEE-EECCC
T ss_pred             h--hhc----------------cCCCCCEEECcCCc-ccCCc
Confidence            2  343                45566666666665 43333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=2.8e-13  Score=120.03  Aligned_cols=139  Identities=21%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccE
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSK  235 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~  235 (349)
                      +..+++|++|++++|.++.+| .+ +.+++|++|++++|.++.+|. ++++++|++|+-.-.++..+.-.  .. ++|+.
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l-~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L~~  110 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GM-QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGI--PS-ACLSR  110 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC--CC-SSCCE
T ss_pred             hhhcCcCcEEECcCCCcccch-HH-hhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcc--cc-CcccE
Confidence            445556666666666666665 34 566666666666666666554 44444443333000011110000  11 33444


Q ss_pred             EEEccC--------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccCC
Q 041418          236 IVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWC  307 (349)
Q Consensus       236 L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~  307 (349)
                      |++++|        ..+++|+.|++++|.+++.+  .+                +.+++|+.|++++|. +..++ .+..
T Consensus       111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~--~l----------------~~l~~L~~L~L~~N~-i~~~~-~l~~  170 (263)
T 1xeu_A          111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV--ML----------------GFLSKLEVLDLHGNE-ITNTG-GLTR  170 (263)
T ss_dssp             EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG--GG----------------GGCTTCCEEECTTSC-CCBCT-TSTT
T ss_pred             EEccCCccCCChhhcCcccccEEECCCCcCCCCh--HH----------------ccCCCCCEEECCCCc-CcchH-Hhcc
Confidence            444433        44556666666666654321  22                446667777777765 55553 4667


Q ss_pred             CCCCCEEEecCCC
Q 041418          308 IKSLNKFDCWWPQ  320 (349)
Q Consensus       308 l~~L~~L~l~~~~  320 (349)
                      +++|+.|++++|+
T Consensus       171 l~~L~~L~l~~N~  183 (263)
T 1xeu_A          171 LKKVNWIDLTGQK  183 (263)
T ss_dssp             CCCCCEEEEEEEE
T ss_pred             CCCCCEEeCCCCc
Confidence            7777777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.42  E-value=9.6e-13  Score=114.12  Aligned_cols=135  Identities=19%  Similarity=0.160  Sum_probs=89.6

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhhhCCCCCCeeeccCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLNFGLSCLKSLKLANESKM  230 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~~~l~~L~~L~l~~~~~~  230 (349)
                      +|..+.  ++|++|++++|.++.+++..|+++++|++|++++|.++.+|... ..++          +|+.|++++    
T Consensus        34 ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~----------~L~~L~Ls~----   97 (229)
T 3e6j_A           34 VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT----------QLTVLDLGT----   97 (229)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT----------TCCEEECCS----
T ss_pred             cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC----------CcCEEECCC----
Confidence            555443  77888888888888775544488888888888888888777543 3333          333333310    


Q ss_pred             CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCC
Q 041418          231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIK  309 (349)
Q Consensus       231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~  309 (349)
                      ..++.+.-.....+++|+.|++++|.+...+ ..                ...+++|+.|++++|. +..+|. .+..++
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp-~~----------------~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  159 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP-RG----------------IERLTHLTHLALDQNQ-LKSIPHGAFDRLS  159 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC-TT----------------GGGCTTCSEEECCSSC-CCCCCTTTTTTCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccC-cc----------------cccCCCCCEEECCCCc-CCccCHHHHhCCC
Confidence            0111111000045678888888888876433 22                1567899999999986 788875 478899


Q ss_pred             CCCEEEecCCC
Q 041418          310 SLNKFDCWWPQ  320 (349)
Q Consensus       310 ~L~~L~l~~~~  320 (349)
                      +|+.|++.++|
T Consensus       160 ~L~~L~l~~N~  170 (229)
T 3e6j_A          160 SLTHAYLFGNP  170 (229)
T ss_dssp             TCCEEECTTSC
T ss_pred             CCCEEEeeCCC
Confidence            99999999987

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.41  E-value=4.1e-14  Score=132.35  Aligned_cols=159  Identities=11%  Similarity=0.042  Sum_probs=94.3

Q ss_pred             CCCCCCCEEeecCCCCcc-----cchhHHhcCcCCcEEeccCcCcccc-----chhhhccccchhhh--hCCCCCCeeec
Q 041418          157 ENLFLLRYLKLNIPSLKS-----LSSSLLSNLLNLYTLDMPFSYIDHT-----VDEFWKMKKLRHLN--FGLSCLKSLKL  224 (349)
Q Consensus       157 ~~l~~L~~L~l~~~~l~~-----lp~~if~~l~~L~~L~l~~~~l~~l-----p~~i~~L~~L~~L~--~~l~~L~~L~l  224 (349)
                      ..+++|++|++++|.++.     +|..+ .++++|++|++++|.++..     +..+..+   ....  +..++|++|++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l---~~~~~~~~~~~L~~L~L  166 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQEL---AVNKKAKNAPPLRSIIC  166 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHH---HHHHHHHTCCCCCEEEC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHH---hhhhhcccCCCCcEEEC
Confidence            566667777777666654     55555 6666777777766655432     1112222   0000  11156666666


Q ss_pred             cCC--------------CCCCCccEEEEccC---------------CCCCCccEEEEeecCCC----CCCcccccCCccc
Q 041418          225 ANE--------------SKMPWLSKIVLAEY---------------LFPHSLTHLSFSNTDRM----DDPMPVLETLPLL  271 (349)
Q Consensus       225 ~~~--------------~~~~~L~~L~l~~~---------------~~~~~L~~L~L~~~~l~----~~~~~~l~~l~~L  271 (349)
                      +++              ..+++|+.|++++|               ..+++|+.|+|++|.++    ...+..+..+++|
T Consensus       167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  246 (386)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence            511              24567777777776               25677888888888764    2233456667777


Q ss_pred             cccc----cc--------cccc--ccccccceeeeeccCCCCC-----CCccc-CCCCCCCEEEecCCC
Q 041418          272 QKAD----FW--------TMGN--AAMPKLECLIINPCAYLKK-----MPEHL-WCIKSLNKFDCWWPQ  320 (349)
Q Consensus       272 ~~L~----~~--------~~~~--~~~~~L~~L~l~~c~~l~~-----lp~~l-~~l~~L~~L~l~~~~  320 (349)
                      +.|+    .+        ....  +.+++|+.|++++|. +..     +|..+ .++++|+.|++++|+
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            7776    10        1101  236778888888877 554     77666 557888888888776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.40  E-value=1.8e-12  Score=111.71  Aligned_cols=136  Identities=13%  Similarity=0.151  Sum_probs=90.1

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc-chhhhccccchhhhhCCCCCCeeeccCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLNFGLSCLKSLKLANESKM  230 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~  230 (349)
                      +|..+.  ++|+.|++++|.++.+|...|..+++|++|++++|.++.+ |..+.++++|++|          +++    -
T Consensus        26 iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L----------~Ls----~   89 (220)
T 2v9t_B           26 IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL----------VLY----G   89 (220)
T ss_dssp             CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE----------ECC----S
T ss_pred             CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE----------ECC----C
Confidence            454443  5678888888888877765557788888888888877776 4455544433333          321    0


Q ss_pred             CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCC
Q 041418          231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIK  309 (349)
Q Consensus       231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~  309 (349)
                      ..++.+.-.....+++|+.|+|++|.+...++..+                ..+++|+.|++++|. +..+|. .+..++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  152 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF----------------QDLHNLNLLSLYDNK-LQTIAKGTFSPLR  152 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc----------------CCCCCCCEEECCCCc-CCEECHHHHhCCC
Confidence            01111110000456788888888888877655444                456789999999987 777765 488899


Q ss_pred             CCCEEEecCCC
Q 041418          310 SLNKFDCWWPQ  320 (349)
Q Consensus       310 ~L~~L~l~~~~  320 (349)
                      +|+.|+++++|
T Consensus       153 ~L~~L~L~~N~  163 (220)
T 2v9t_B          153 AIQTMHLAQNP  163 (220)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEEeCCCC
Confidence            99999999877

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.39  E-value=6.3e-13  Score=122.73  Aligned_cols=166  Identities=14%  Similarity=0.062  Sum_probs=116.8

Q ss_pred             CC-cccCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcE-EeccCcCccccch-hhhccccchhhh--------------
Q 041418          152 YP-SGIENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYT-LDMPFSYIDHTVD-EFWKMKKLRHLN--------------  213 (349)
Q Consensus       152 lp-~~i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~-L~l~~~~l~~lp~-~i~~L~~L~~L~--------------  213 (349)
                      +| .+|+++++|++|+|++|.+. .+|...|.++++|+. +.+++|.+..+|+ .+..+++|++|+              
T Consensus        45 i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~  124 (350)
T 4ay9_X           45 IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK  124 (350)
T ss_dssp             ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT
T ss_pred             cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh
Confidence            55 45788888999999888864 577766688888775 4555568888854 467888888887              


Q ss_pred             hCCCCCCeeeccCC-----------CC-CCCccEEEEccC---------CCCCCccEEEEee-cCCCCCCcccccCCccc
Q 041418          214 FGLSCLKSLKLANE-----------SK-MPWLSKIVLAEY---------LFPHSLTHLSFSN-TDRMDDPMPVLETLPLL  271 (349)
Q Consensus       214 ~~l~~L~~L~l~~~-----------~~-~~~L~~L~l~~~---------~~~~~L~~L~L~~-~~l~~~~~~~l~~l~~L  271 (349)
                      ....++..|++.+.           .. ...++.|++++|         ....+|+.|++.+ |.++..+...++.+++|
T Consensus       125 ~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L  204 (350)
T 4ay9_X          125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP  204 (350)
T ss_dssp             CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC
T ss_pred             cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCccc
Confidence            12233444444311           11 235777888877         2345678888864 56666666778889999


Q ss_pred             cccc----cc-ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418          272 QKAD----FW-TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW  318 (349)
Q Consensus       272 ~~L~----~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  318 (349)
                      +.|+    .+ ..+.+.+.+|+.|.+.+|..++.+|. +..+++|+.+++.+
T Consensus       205 ~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          205 VILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             SEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             chhhcCCCCcCccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            9888    11 11235688899999999999999996 88999999999865

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.39  E-value=5.9e-14  Score=131.28  Aligned_cols=184  Identities=18%  Similarity=0.167  Sum_probs=121.9

Q ss_pred             cccCCCCCCCEEeecCCCCc----ccchhH------HhcCcCCcEEeccCcCccc-----cchhhhccccchhhhhCCCC
Q 041418          154 SGIENLFLLRYLKLNIPSLK----SLSSSL------LSNLLNLYTLDMPFSYIDH-----TVDEFWKMKKLRHLNFGLSC  218 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~----~lp~~i------f~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~~~l~~  218 (349)
                      ..+..+++|++|++++|.+.    .+|..+      |.++++|++|++++|.++.     +|..+.++++|++|      
T Consensus        54 ~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L------  127 (386)
T 2ca6_A           54 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL------  127 (386)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEE------
T ss_pred             HHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEE------
Confidence            44667888888888887554    344443      3678888888888887665     66666666555555      


Q ss_pred             CCeeeccCC--------------CCC---------CCccEEEEccC--------------CCCCCccEEEEeecCCCCC-
Q 041418          219 LKSLKLANE--------------SKM---------PWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDD-  260 (349)
Q Consensus       219 L~~L~l~~~--------------~~~---------~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~-  260 (349)
                          ++++.              ..+         ++|+.|++++|              ..+++|+.|++++|.+... 
T Consensus       128 ----~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g  203 (386)
T 2ca6_A          128 ----YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG  203 (386)
T ss_dssp             ----ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHH
T ss_pred             ----ECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhH
Confidence                44311              112         79999999988              2567999999999988632 


Q ss_pred             ---Ccc-cccCCccccccc----cc--------ccccccccccceeeeeccCCCCC-----CCccc--CCCCCCCEEEec
Q 041418          261 ---PMP-VLETLPLLQKAD----FW--------TMGNAAMPKLECLIINPCAYLKK-----MPEHL--WCIKSLNKFDCW  317 (349)
Q Consensus       261 ---~~~-~l~~l~~L~~L~----~~--------~~~~~~~~~L~~L~l~~c~~l~~-----lp~~l--~~l~~L~~L~l~  317 (349)
                         ..+ .+..+++|+.|+    .+        +.....+++|+.|++++|. +..     +|..+  +.+++|+.|+++
T Consensus       204 ~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~  282 (386)
T 2ca6_A          204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQ  282 (386)
T ss_dssp             HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred             HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECc
Confidence               123 677788888887    11        1122457889999999987 543     45555  448999999999


Q ss_pred             CCCHHH--HHhhhhcc-cccccccceeeeccccc
Q 041418          318 WPQPEL--RQKLREFE-DKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       318 ~~~~~~--~~~l~~~~-~~i~~ip~i~~~~~~~~  348 (349)
                      +|.-.-  ...+.... ....++..+.+.+|.++
T Consensus       283 ~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             SSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            987211  11233322 33466667777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.39  E-value=7.9e-13  Score=130.54  Aligned_cols=109  Identities=25%  Similarity=0.255  Sum_probs=84.9

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCC
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPW  232 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~  232 (349)
                      ++.+++|++|+|++|.++.+| .+ +.+++|++|+|++|.+..+|. +..+++|+.|+   ..+..+..+     ..+++
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~-~l-~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l-----~~l~~  154 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLS-SL-KDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITDITVL-----SRLTK  154 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCT-TS-TTCTTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGG-----GSCTT
T ss_pred             hccCCCCCEEECcCCCCCCCh-hh-ccCCCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCccCCchhh-----cccCC
Confidence            888999999999999999987 55 999999999999999988864 88888888887   233333222     67888


Q ss_pred             ccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCcccccc
Q 041418          233 LSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKA  274 (349)
Q Consensus       233 L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L  274 (349)
                      |+.|+|++|        ..+++|+.|+|++|.+...  +.+..+++|+.|
T Consensus       155 L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L  202 (605)
T 1m9s_A          155 LDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVL  202 (605)
T ss_dssp             CSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEE
T ss_pred             CCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC--hHHccCCCCCEE
Confidence            999998888        6789999999999998753  345444444333

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.39  E-value=5.4e-13  Score=123.70  Aligned_cols=186  Identities=15%  Similarity=0.084  Sum_probs=101.8

Q ss_pred             ccCCCC-CCCEEeecCCCCcccchhHHhcC-----cCCcEEeccCcCccccch-hhhccccchhhhhCC-CCCCeeeccC
Q 041418          155 GIENLF-LLRYLKLNIPSLKSLSSSLLSNL-----LNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGL-SCLKSLKLAN  226 (349)
Q Consensus       155 ~i~~l~-~L~~L~l~~~~l~~lp~~if~~l-----~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l-~~L~~L~l~~  226 (349)
                      .+..++ +|++|++++|.++......|+.+     ++|++|++++|.++..+. .+...     + ..+ ++|+.|++++
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-----l-~~~~~~L~~L~Ls~  118 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT-----L-AAIPFTITVLDLGW  118 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH-----H-HTSCTTCCEEECCS
T ss_pred             HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH-----H-HhCCCCccEEECcC
Confidence            345555 66666666666665432222443     666666666665554432 22221     0 122 4555555552


Q ss_pred             C--------------CC-CCCccEEEEccC--------------CCC-CCccEEEEeecCCCCCCcccc----cCC-ccc
Q 041418          227 E--------------SK-MPWLSKIVLAEY--------------LFP-HSLTHLSFSNTDRMDDPMPVL----ETL-PLL  271 (349)
Q Consensus       227 ~--------------~~-~~~L~~L~l~~~--------------~~~-~~L~~L~L~~~~l~~~~~~~l----~~l-~~L  271 (349)
                      +              .. +++|++|++++|              ... ++|+.|++++|.++......+    ... ++|
T Consensus       119 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L  198 (362)
T 3goz_A          119 NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV  198 (362)
T ss_dssp             SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCC
Confidence            1              12 357777777766              122 377777777777765554333    333 367


Q ss_pred             cccc----cc--------cccccc-ccccceeeeeccCCCCCCCc-----ccCCCCCCCEEEecCCC-----HHHHHhhh
Q 041418          272 QKAD----FW--------TMGNAA-MPKLECLIINPCAYLKKMPE-----HLWCIKSLNKFDCWWPQ-----PELRQKLR  328 (349)
Q Consensus       272 ~~L~----~~--------~~~~~~-~~~L~~L~l~~c~~l~~lp~-----~l~~l~~L~~L~l~~~~-----~~~~~~l~  328 (349)
                      +.|+    .+        ...... .++|+.|++++|. ++..+.     .+..+++|+.|++++|.     .+....+.
T Consensus       199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~  277 (362)
T 3goz_A          199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG  277 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred             CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence            6666    11        000111 2478888888876 555442     34667788888887764     33344444


Q ss_pred             hcccccccccceeeecccc
Q 041418          329 EFEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       329 ~~~~~i~~ip~i~~~~~~~  347 (349)
                      ..+....++..+.+.+|.+
T Consensus       278 ~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          278 AAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             TTSTTCCEEEEECTTSCBC
T ss_pred             HHhccCCceEEEecCCCcC
Confidence            4556666666666666654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.37  E-value=8.3e-14  Score=132.99  Aligned_cols=204  Identities=14%  Similarity=0.000  Sum_probs=136.3

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhh-h---ccCcccc-------------CCcccCCCCCCCEEeecCCCCcccch-
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKI-C---GMFKLLR-------------YPSGIENLFLLRYLKLNIPSLKSLSS-  177 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~-~---~~l~~L~-------------lp~~i~~l~~L~~L~l~~~~l~~lp~-  177 (349)
                      ...+++++.|.+.++.........+... .   .+++.|.             ++..+..+++|++|++++|.++..+. 
T Consensus       109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  188 (461)
T 1z7x_W          109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  188 (461)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence            3456677777777665431101111111 1   1344444             24456667888888888887764322 


Q ss_pred             hH----HhcCcCCcEEeccCcCccc-----cchhhhccccchhhh-------------------hCCCCCCeeeccCC--
Q 041418          178 SL----LSNLLNLYTLDMPFSYIDH-----TVDEFWKMKKLRHLN-------------------FGLSCLKSLKLANE--  227 (349)
Q Consensus       178 ~i----f~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~-------------------~~l~~L~~L~l~~~--  227 (349)
                      .+    ....++|++|++++|.++.     +|..+..+++|++|+                   ..+++|+.|++++.  
T Consensus       189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            22    1135688888888887765     577777888888887                   14788999988722  


Q ss_pred             ------------CCCCCccEEEEccC---------------CCCCCccEEEEeecCCCCCC----cccccCCccccccc-
Q 041418          228 ------------SKMPWLSKIVLAEY---------------LFPHSLTHLSFSNTDRMDDP----MPVLETLPLLQKAD-  275 (349)
Q Consensus       228 ------------~~~~~L~~L~l~~~---------------~~~~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~-  275 (349)
                                  ..+++|+.|++++|               ...++|+.|++++|.++...    ...+..+++|+.|+ 
T Consensus       269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L  348 (461)
T 1z7x_W          269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI  348 (461)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred             CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEc
Confidence                        34788999999988               23469999999999887653    23455668888887 


Q ss_pred             --ccccc-----c-c----cccccceeeeeccCCCC-----CCCcccCCCCCCCEEEecCCC
Q 041418          276 --FWTMG-----N-A----AMPKLECLIINPCAYLK-----KMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       276 --~~~~~-----~-~----~~~~L~~L~l~~c~~l~-----~lp~~l~~l~~L~~L~l~~~~  320 (349)
                        ....+     . .    ..++|+.|++++|. ++     .+|..+..+++|++|++++|+
T Consensus       349 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             cCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence              00000     0 1    15689999999997 55     678878889999999999987

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.37  E-value=4.2e-12  Score=124.30  Aligned_cols=33  Identities=6%  Similarity=-0.038  Sum_probs=30.6

Q ss_pred             cceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          287 LECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       287 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      |+.|++++|. +..+|.++..+++|+.|++++|+
T Consensus       209 L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          209 EIFFRCRENR-ITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred             ceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence            3999999987 88999999999999999999998

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.36  E-value=3.3e-12  Score=110.03  Aligned_cols=136  Identities=14%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccc-hhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLS-SSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESK  229 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp-~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~  229 (349)
                      +|..+.  ..+++|++++|.++.++ ...|+++++|++|++++|.++.+|+ .++++++          |+.|++++   
T Consensus        26 iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~----------L~~L~Ls~---   90 (220)
T 2v70_A           26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG----------VNEILLTS---   90 (220)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT----------CCEEECCS---
T ss_pred             CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC----------CCEEECCC---
Confidence            444443  24578888888887763 3444788888888888887777765 3443332          22222210   


Q ss_pred             CCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCC-CcccCCC
Q 041418          230 MPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM-PEHLWCI  308 (349)
Q Consensus       230 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l  308 (349)
                       ..+..+.-.....+++|+.|++++|.+...++..+                ..+++|+.|++++|. +..+ |..+..+
T Consensus        91 -N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l  152 (220)
T 2v70_A           91 -NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF----------------IGLSSVRLLSLYDNQ-ITTVAPGAFDTL  152 (220)
T ss_dssp             -SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS----------------TTCTTCSEEECTTSC-CCCBCTTTTTTC
T ss_pred             -CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc----------------CCCccCCEEECCCCc-CCEECHHHhcCC
Confidence             01111100000456777777777777766544433                457889999999987 6666 6778999


Q ss_pred             CCCCEEEecCCC
Q 041418          309 KSLNKFDCWWPQ  320 (349)
Q Consensus       309 ~~L~~L~l~~~~  320 (349)
                      ++|+.|++++|+
T Consensus       153 ~~L~~L~L~~N~  164 (220)
T 2v70_A          153 HSLSTLNLLANP  164 (220)
T ss_dssp             TTCCEEECCSCC
T ss_pred             CCCCEEEecCcC
Confidence            999999999987

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.36  E-value=8.2e-12  Score=123.50  Aligned_cols=198  Identities=18%  Similarity=0.150  Sum_probs=144.9

Q ss_pred             CCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-------CCcccCCCCCCCEEeecCCCCc---ccchhHHhcCcCCc
Q 041418          118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------YPSGIENLFLLRYLKLNIPSLK---SLSSSLLSNLLNLY  187 (349)
Q Consensus       118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------lp~~i~~l~~L~~L~l~~~~l~---~lp~~if~~l~~L~  187 (349)
                      ....++.+.+.++.......    ..+..++.+.       .+.....+++|++|++++|.+.   ..|... ..+.+|+
T Consensus       326 ~~~~L~~L~l~~~~~~~~~~----~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~  400 (635)
T 4g8a_A          326 YNFGWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD-FGTISLK  400 (635)
T ss_dssp             SCCCCSEEEEESCEESSCCC----CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH-HSCSCCC
T ss_pred             cchhhhhhhcccccccCcCc----ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch-hhhhhhh
Confidence            34566777766654432111    1222333332       2334557889999999998875   345566 7889999


Q ss_pred             EEeccCcCccccchhhhccccchhhh---------------hCCCCCCeeeccCC----------CCCCCccEEEEccC-
Q 041418          188 TLDMPFSYIDHTVDEFWKMKKLRHLN---------------FGLSCLKSLKLANE----------SKMPWLSKIVLAEY-  241 (349)
Q Consensus       188 ~L~l~~~~l~~lp~~i~~L~~L~~L~---------------~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~-  241 (349)
                      +|++..+....++..+..+++|+.++               ..+++++.++++.+          ..++.|+.|++++| 
T Consensus       401 ~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~  480 (635)
T 4g8a_A          401 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS  480 (635)
T ss_dssp             EEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             hhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence            99999987777777788888888776               45677888877621          56789999999887 


Q ss_pred             ----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc-cccccccccceeeeeccCCCCCCCc
Q 041418          242 ----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT-MGNAAMPKLECLIINPCAYLKKMPE  303 (349)
Q Consensus       242 ----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~-~~~~~~~~L~~L~l~~c~~l~~lp~  303 (349)
                                ..+++|+.|+|++|++++.++..++.+++|+.|+       ... ...+.+++|+.|++++|...+..|.
T Consensus       481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence                      5678999999999999988888999999999998       121 1235678999999999984444455


Q ss_pred             ccCCC-CCCCEEEecCCC
Q 041418          304 HLWCI-KSLNKFDCWWPQ  320 (349)
Q Consensus       304 ~l~~l-~~L~~L~l~~~~  320 (349)
                      .+..+ ++|+.|++++||
T Consensus       561 ~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          561 ELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CTTCCCTTCCEEECTTCC
T ss_pred             HHHhhhCcCCEEEeeCCC
Confidence            67777 689999998866

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.36  E-value=4.9e-13  Score=121.29  Aligned_cols=180  Identities=15%  Similarity=0.100  Sum_probs=121.2

Q ss_pred             CCCCCEEeecCCCCcc-cchhHH-hcCcCCcEEeccCcCcccc-c----hhhhccccchhhh---hCCCCCCeeeccCCC
Q 041418          159 LFLLRYLKLNIPSLKS-LSSSLL-SNLLNLYTLDMPFSYIDHT-V----DEFWKMKKLRHLN---FGLSCLKSLKLANES  228 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~-lp~~if-~~l~~L~~L~l~~~~l~~l-p----~~i~~L~~L~~L~---~~l~~L~~L~l~~~~  228 (349)
                      +++|++|++++|.++. .|..+| +++++|++|++++|.+... |    ..+..+++|++|+   ..+..+..-.+   .
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~  166 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV---R  166 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC---C
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh---c
Confidence            4569999999999884 444433 7899999999999977653 2    2234455555554   11111110011   4


Q ss_pred             CCCCccEEEEccC--------------CCCCCccEEEEeecCCCCCCcc---cccCCccccccc-------cc-cccccc
Q 041418          229 KMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPMP---VLETLPLLQKAD-------FW-TMGNAA  283 (349)
Q Consensus       229 ~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~~---~l~~l~~L~~L~-------~~-~~~~~~  283 (349)
                      .+++|+.|++++|              ..+++|++|++++|.++..+..   .++.+++|++|+       .. +...+.
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~  246 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR  246 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence            6778888888887              3578899999999998643211   246778888888       11 111233


Q ss_pred             c---cccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccccc
Q 041418          284 M---PKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       284 ~---~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~~  348 (349)
                      +   ++|+.|++++|. ++.+|.++.  ++|+.|++++|.-   ..+ +....+..+..+.+.+|.++
T Consensus       247 ~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L~Ls~N~l---~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          247 CMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVLDLSSNRL---NRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCEECCSCCC---CSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             ccCcCcCCEEECCCCC-CCchhhhhc--CCCCEEECCCCcC---CCC-chhhhCCCccEEECcCCCCC
Confidence            3   699999999987 779998764  8999999999872   222 23455667778888888765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.35  E-value=1.1e-14  Score=142.75  Aligned_cols=160  Identities=19%  Similarity=0.110  Sum_probs=119.6

Q ss_pred             CCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC--------------ccccchhhhccccchhhh----hCCCC
Q 041418          157 ENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY--------------IDHTVDEFWKMKKLRHLN----FGLSC  218 (349)
Q Consensus       157 ~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~--------------l~~lp~~i~~L~~L~~L~----~~l~~  218 (349)
                      ...++|+.|++++|.++.+|+++ +++++|+.|++++|.              .+.+|..++.+++|+.|+    +.+++
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i-~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHH-HHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHH-HHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            67889999999999999999999 999999999997763              334566778888888875    11222


Q ss_pred             CCeeeccCC----CCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc
Q 041418          219 LKSLKLANE----SKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM  279 (349)
Q Consensus       219 L~~L~l~~~----~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~  279 (349)
                      |+.+.+.++    -....|+.|++++|        ..+++|+.|++++|.++.. +..++.+++|+.|+       .+ +
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p  502 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENV-D  502 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSSCCCCC-G
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCccccccc-chhhhcCCCCCEEECCCCCCCCC-c
Confidence            222222100    01123555555555        5577899999999998844 46888889998888       32 2


Q ss_pred             ccccccccceeeeeccCCCCCC--CcccCCCCCCCEEEecCCC
Q 041418          280 GNAAMPKLECLIINPCAYLKKM--PEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       280 ~~~~~~~L~~L~l~~c~~l~~l--p~~l~~l~~L~~L~l~~~~  320 (349)
                      ..+.+++|+.|++++|. +..+  |..++.+++|+.|++++|+
T Consensus       503 ~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          503 GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence            55678999999999987 7777  8889999999999999998

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.33  E-value=5.3e-13  Score=122.11  Aligned_cols=171  Identities=13%  Similarity=0.081  Sum_probs=124.8

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCC--CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENL--FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l--~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      ..++.+.+.++...                   |..++.+  +++++|++++|.+...+..+ .++++|++|++++|.+.
T Consensus        47 ~~~~~l~l~~~~~~-------------------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~  106 (336)
T 2ast_B           47 SLWQTLDLTGKNLH-------------------PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE  106 (336)
T ss_dssp             TTSSEEECTTCBCC-------------------HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEEC
T ss_pred             hhheeeccccccCC-------------------HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcC
Confidence            35777777665432                   2234445  78999999999998877777 78999999999999665


Q ss_pred             c--cchhhhccccchhhhhCCCCCCeeeccCC----------CCCCCccEEEEccC------------CCCCCccEEEEe
Q 041418          198 H--TVDEFWKMKKLRHLNFGLSCLKSLKLANE----------SKMPWLSKIVLAEY------------LFPHSLTHLSFS  253 (349)
Q Consensus       198 ~--lp~~i~~L~~L~~L~~~l~~L~~L~l~~~----------~~~~~L~~L~l~~~------------~~~~~L~~L~L~  253 (349)
                      .  +|..+..+++|++|+          +++.          ..+++|+.|++++|            ..+++|+.|+++
T Consensus       107 ~~~~~~~~~~~~~L~~L~----------L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~  176 (336)
T 2ast_B          107 VSTLHGILSQCSKLQNLS----------LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS  176 (336)
T ss_dssp             HHHHHHHHTTBCCCSEEE----------CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHhhCCCCCEEe----------CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence            3  777777777666665          2210          45677777777766            457889999999


Q ss_pred             ec-CCCCC-CcccccCCc-cccccc---c--c------ccccccccccceeeeeccCCC-CCCCcccCCCCCCCEEEecC
Q 041418          254 NT-DRMDD-PMPVLETLP-LLQKAD---F--W------TMGNAAMPKLECLIINPCAYL-KKMPEHLWCIKSLNKFDCWW  318 (349)
Q Consensus       254 ~~-~l~~~-~~~~l~~l~-~L~~L~---~--~------~~~~~~~~~L~~L~l~~c~~l-~~lp~~l~~l~~L~~L~l~~  318 (349)
                      +| .+++. ....++.++ +|++|+   .  .      +...+.+++|+.|++++|..+ ...+..+..+++|++|++++
T Consensus       177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~  256 (336)
T 2ast_B          177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR  256 (336)
T ss_dssp             CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence            99 77653 244567788 888887   1  0      111245789999999999844 35666789999999999999


Q ss_pred             CC
Q 041418          319 PQ  320 (349)
Q Consensus       319 ~~  320 (349)
                      |+
T Consensus       257 ~~  258 (336)
T 2ast_B          257 CY  258 (336)
T ss_dssp             CT
T ss_pred             CC
Confidence            96

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.32  E-value=6.5e-12  Score=116.40  Aligned_cols=146  Identities=21%  Similarity=0.214  Sum_probs=75.6

Q ss_pred             CCCEEeecCCCCcccchhHHh-cCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE
Q 041418          161 LLRYLKLNIPSLKSLSSSLLS-NLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL  238 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~~if~-~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l  238 (349)
                      .+++|++++|.++.+|...|. ++++|++|++++|.++.+|. .+.++++|++|+-.-.+|+.+.-..-..+++|+.|++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            467777777777777666545 67777777777777766654 3554444444431111111111000022333333333


Q ss_pred             ccC----------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCC
Q 041418          239 AEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWC  307 (349)
Q Consensus       239 ~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~  307 (349)
                      ++|          ..+++|+.|+|++|.++..+...+..             ...+++|+.|++++|. +..+|. .+..
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-------------~~~l~~L~~L~L~~N~-l~~l~~~~~~~  185 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD-------------GNKLPKLMLLDLSSNK-LKKLPLTDLQK  185 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC-----------------CTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC-------------cccCCcCCEEECCCCC-CCccCHHHhhh
Confidence            333          34455555555555554433222211             0346777777887765 667764 3555


Q ss_pred             CCC--CCEEEecCCC
Q 041418          308 IKS--LNKFDCWWPQ  320 (349)
Q Consensus       308 l~~--L~~L~l~~~~  320 (349)
                      +++  |+.|++.+||
T Consensus       186 l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          186 LPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SCHHHHTTEECCSSC
T ss_pred             ccHhhcceEEecCCC
Confidence            665  3677777766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.31  E-value=3e-12  Score=105.26  Aligned_cols=119  Identities=20%  Similarity=0.189  Sum_probs=75.8

Q ss_pred             CCCCCEEeecCCCCc--ccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEE
Q 041418          159 LFLLRYLKLNIPSLK--SLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKI  236 (349)
Q Consensus       159 l~~L~~L~l~~~~l~--~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L  236 (349)
                      .++|++|++++|.++  .+|..+ +.+++|++|++++|.++.+ ..++.+                        ++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l------------------------~~L~~L   76 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV-SNLPKL------------------------PKLKKL   76 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC-SSCCCC------------------------SSCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh-hhhccC------------------------CCCCEE
Confidence            356677777777666  666655 6667777777777666555 223222                        222222


Q ss_pred             EEccC----------CCCCCccEEEEeecCCCCCCc-ccccCCcccccccccccccccccccceeeeeccCCCCCCCc--
Q 041418          237 VLAEY----------LFPHSLTHLSFSNTDRMDDPM-PVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE--  303 (349)
Q Consensus       237 ~l~~~----------~~~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~--  303 (349)
                      ++++|          ..+++|+.|++++|.++..+. ..+                +.+++|+.|++++|+ +..+|.  
T Consensus        77 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l----------------~~l~~L~~L~l~~N~-l~~~~~~~  139 (168)
T 2ell_A           77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL----------------KKLECLKSLDLFNCE-VTNLNDYR  139 (168)
T ss_dssp             EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG----------------SSCSCCCEEECCSSG-GGTSTTHH
T ss_pred             ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH----------------hcCCCCCEEEeeCCc-CcchHHHH
Confidence            22222          235677777788887765431 222                457788888898887 777776  


Q ss_pred             --ccCCCCCCCEEEecCCC
Q 041418          304 --HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       304 --~l~~l~~L~~L~l~~~~  320 (349)
                        .+..+++|++|++++|+
T Consensus       140 ~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          140 ESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             HHHHTTCSSCCEETTEETT
T ss_pred             HHHHHhCccCcEecCCCCC
Confidence              67888999999998887

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.31  E-value=2e-12  Score=137.67  Aligned_cols=91  Identities=14%  Similarity=0.160  Sum_probs=81.2

Q ss_pred             HhhHHHHHhhhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCCc
Q 041418            4 TMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGT   83 (349)
Q Consensus         4 ~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~   83 (349)
                      +.|..++++||+.||+++|+||+|||+||+++.|+++.++.+|.++       ++.++.++++|+++||++....   ++
T Consensus       362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~~---~~  431 (1249)
T 3sfz_A          362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNRN---GK  431 (1249)
T ss_dssp             HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEES---SS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEecC---CC
Confidence            5689999999999999999999999999999999999999999765       4668999999999999997653   33


Q ss_pred             eeeEEeChhHHHHHHHhhccc
Q 041418           84 INTCSIPGRCRPVLLGVASKV  104 (349)
Q Consensus        84 ~~~~~mHdli~dla~~i~~~~  104 (349)
                      ..+|+|||++|++|+..+.++
T Consensus       432 ~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          432 SFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             SEEEECCHHHHHHHHHHTGGG
T ss_pred             ceEEEecHHHHHHHHhhhhHH
Confidence            457999999999999998765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.30  E-value=1.4e-11  Score=104.95  Aligned_cols=136  Identities=22%  Similarity=0.227  Sum_probs=96.3

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhhhCCCCCCeeeccCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLNFGLSCLKSLKLANESKM  230 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~~~l~~L~~L~l~~~~~~  230 (349)
                      +|..+  .++|++|++++|.++.+|...|+++++|++|++++|.++.+|... ..+          ++|++|++++    
T Consensus        22 ~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l----------~~L~~L~Ls~----   85 (208)
T 2o6s_A           22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL----------TSLTYLNLST----   85 (208)
T ss_dssp             CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC----------TTCCEEECCS----
T ss_pred             CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCC----------CCcCEEECCC----
Confidence            55444  458999999999999998876689999999999999888887653 333          3444444420    


Q ss_pred             CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCC
Q 041418          231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIK  309 (349)
Q Consensus       231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~  309 (349)
                      ..++.+.-.....+++|+.|++++|.+...+...+                +.+++|+.|++++|. +..+|.. +..++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------------~~l~~L~~L~l~~N~-l~~~~~~~~~~l~  148 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF----------------DKLTQLKDLRLYQNQ-LKSVPDGVFDRLT  148 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CSCCCTTTTTTCT
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHh----------------ccCCcCCEEECCCCc-cceeCHHHhccCC
Confidence            11211110000467888999999988876554333                456788999999886 7777764 78899


Q ss_pred             CCCEEEecCCC
Q 041418          310 SLNKFDCWWPQ  320 (349)
Q Consensus       310 ~L~~L~l~~~~  320 (349)
                      +|+.|++++|+
T Consensus       149 ~L~~L~l~~N~  159 (208)
T 2o6s_A          149 SLQYIWLHDNP  159 (208)
T ss_dssp             TCCEEECCSCC
T ss_pred             CccEEEecCCC
Confidence            99999999876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=6.3e-12  Score=116.50  Aligned_cols=129  Identities=20%  Similarity=0.144  Sum_probs=86.3

Q ss_pred             cccC-CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418          154 SGIE-NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMP  231 (349)
Q Consensus       154 ~~i~-~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~  231 (349)
                      ..+. ++++|++|++++|.++.+|...|.++++|++|+|++|.++.+|.. +..+++|++|+-.-..+..+.-..-..++
T Consensus        57 ~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  136 (361)
T 2xot_A           57 EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA  136 (361)
T ss_dssp             TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence            3455 788888888888888888766558888888888888888887654 56666666665111222222100004567


Q ss_pred             CccEEEEccC-------------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccC
Q 041418          232 WLSKIVLAEY-------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCA  296 (349)
Q Consensus       232 ~L~~L~l~~~-------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~  296 (349)
                      +|+.|++++|             ..+++|+.|+|++|.+...+...+..++++              .++.|++++|+
T Consensus       137 ~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~--------------~l~~l~l~~N~  200 (361)
T 2xot_A          137 QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW--------------VKNGLYLHNNP  200 (361)
T ss_dssp             TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH--------------HHTTEECCSSC
T ss_pred             cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh--------------hcceEEecCCC
Confidence            7888888777             247899999999999987765555333211              14778888877

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.27  E-value=2.8e-12  Score=130.30  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=74.2

Q ss_pred             HhhHHHHHhhhCCCCCCc-hhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCC
Q 041418            4 TMSLGLQCIIYCMSPFCL-KPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGG   82 (349)
Q Consensus         4 ~~i~~~L~lSY~~L~~~l-k~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~   82 (349)
                      +.|..+|++||+.||+++ |+||+|||+||+++.|+++.++.+|+++|      ++.++.++++|+++||++...     
T Consensus       353 ~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----  421 (1221)
T 1vt4_I          353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----  421 (1221)
T ss_dssp             HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----
Confidence            468999999999999999 99999999999999999999999999987      235889999999999999842     


Q ss_pred             ceeeEEeChhHHHHHH
Q 041418           83 TINTCSIPGRCRPVLL   98 (349)
Q Consensus        83 ~~~~~~mHdli~dla~   98 (349)
                      ...+|+|||++++++.
T Consensus       422 ~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          422 KESTISIPSIYLELKV  437 (1221)
T ss_dssp             SSSEEBCCCHHHHHHH
T ss_pred             CCCEEEehHHHHHHhc
Confidence            1257999999999663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=6.2e-12  Score=106.30  Aligned_cols=146  Identities=11%  Similarity=0.121  Sum_probs=96.6

Q ss_pred             hcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCCCCCCccEEEEeecCCCCC
Q 041418          181 SNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDD  260 (349)
Q Consensus       181 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~  260 (349)
                      +.+++|++|++++|.++.+| ++..+++|++|+          ++   .. .+..+  .....+++|+.|++++|.++..
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~----------l~---~n-~~~~~--~~l~~l~~L~~L~l~~n~l~~~  103 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLT----------IN---NI-HATNY--NPISGLSNLERLRIMGKDVTSD  103 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEE----------EE---SC-CCSCC--GGGTTCTTCCEEEEECTTCBGG
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEE----------cc---CC-CCCcc--hhhhcCCCCCEEEeECCccCcc
Confidence            67889999999999999988 576665555443          32   00 01000  0004556677777777766654


Q ss_pred             CcccccCCccccccc----c----cccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhccc
Q 041418          261 PMPVLETLPLLQKAD----F----WTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFED  332 (349)
Q Consensus       261 ~~~~l~~l~~L~~L~----~----~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~  332 (349)
                      .+..++.+++|++|+    .    .+...+.+++|+.|++++|..++.+| .+..+++|+.|++++|.-   ..+. ...
T Consensus       104 ~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i---~~~~-~l~  178 (197)
T 4ezg_A          104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV---HDYR-GIE  178 (197)
T ss_dssp             GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC---CCCT-TGG
T ss_pred             cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC---cChH-Hhc
Confidence            555666667777666    1    12223568899999999998788898 599999999999999972   2222 445


Q ss_pred             ccccccceeeeccccc
Q 041418          333 KEQQIPNRQSTGEMMS  348 (349)
Q Consensus       333 ~i~~ip~i~~~~~~~~  348 (349)
                      .+..+..+.+.+|.++
T Consensus       179 ~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          179 DFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             GCSSCCEEEECBC---
T ss_pred             cCCCCCEEEeeCcccC
Confidence            5666777888887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.26  E-value=2.3e-12  Score=114.15  Aligned_cols=157  Identities=18%  Similarity=0.128  Sum_probs=110.3

Q ss_pred             CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCcc
Q 041418          158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLS  234 (349)
Q Consensus       158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~  234 (349)
                      .+.++..++++++.++.++ .+ ..+++|++|++++|.++.+| .++.+++|++|+   ..++.+..  +   ..+++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~-~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l---~~l~~L~   88 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQ-KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--L---KDLTKLE   88 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CH-HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--G---TTCSSCC
T ss_pred             HHHHHHHHHhcCCCccccc-ch-hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--h---ccCCCCC
Confidence            3556777889999999988 45 89999999999999999998 577777777776   22222222  2   4566666


Q ss_pred             EEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccC
Q 041418          235 KIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLW  306 (349)
Q Consensus       235 ~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~  306 (349)
                      .|++++|        .. ++|+.|++++|.++..+                  ..+.+++|+.|++++|. +..+| .++
T Consensus        89 ~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~------------------~l~~l~~L~~L~Ls~N~-i~~~~-~l~  147 (263)
T 1xeu_A           89 ELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD------------------SLIHLKNLEILSIRNNK-LKSIV-MLG  147 (263)
T ss_dssp             EEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG------------------GGTTCTTCCEEECTTSC-CCBCG-GGG
T ss_pred             EEECCCCccCCcCcccc-CcccEEEccCCccCCCh------------------hhcCcccccEEECCCCc-CCCCh-HHc
Confidence            6666666        22 56777777777665421                  12567899999999987 88887 589


Q ss_pred             CCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418          307 CIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       307 ~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~  347 (349)
                      .+++|+.|++++|.-   ..+ ..+..+.++..+.+.+|.+
T Consensus       148 ~l~~L~~L~L~~N~i---~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          148 FLSKLEVLDLHGNEI---TNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             GCTTCCEEECTTSCC---CBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             cCCCCCEEECCCCcC---cch-HHhccCCCCCEEeCCCCcc
Confidence            999999999999972   222 3344445555566665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.26  E-value=2.4e-11  Score=104.57  Aligned_cols=148  Identities=13%  Similarity=0.149  Sum_probs=105.3

Q ss_pred             CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC
Q 041418          163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY  241 (349)
Q Consensus       163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~  241 (349)
                      +.++++++.++.+|..+ .  ++|+.|++++|.++.+|. .+..++          +|+.|+++    -..+..+.-...
T Consensus        14 ~~v~c~~~~l~~iP~~l-~--~~l~~L~l~~n~i~~i~~~~~~~l~----------~L~~L~Ls----~N~i~~~~~~~~   76 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL-P--ETITEIRLEQNTIKVIPPGAFSPYK----------KLRRIDLS----NNQISELAPDAF   76 (220)
T ss_dssp             TEEECTTSCCSSCCSSC-C--TTCCEEECCSSCCCEECTTSSTTCT----------TCCEEECC----SSCCCEECTTTT
T ss_pred             CEEEcCCCCcCcCCCcc-C--cCCCEEECCCCcCCCcCHhHhhCCC----------CCCEEECC----CCcCCCcCHHHh
Confidence            67899999999999877 3  789999999999999876 344443          34444442    112222211111


Q ss_pred             CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecCCC
Q 041418          242 LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       242 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~  320 (349)
                      ..+++|+.|+|++|.++..+...+                ..+++|+.|++++|. +..+ |..+..+++|+.|++++|.
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~f----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B           77 QGLRSLNSLVLYGNKITELPKSLF----------------EGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hCCcCCCEEECCCCcCCccCHhHc----------------cCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc
Confidence            567889999999998876654433                457889999999987 6666 5568899999999999997


Q ss_pred             HHHHHhhhh-cccccccccceeeecccc
Q 041418          321 PELRQKLRE-FEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       321 ~~~~~~l~~-~~~~i~~ip~i~~~~~~~  347 (349)
                         +..+.. .+..+.++..+.+.+|.+
T Consensus       140 ---l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          140 ---LQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             ---CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ---CCEECHHHHhCCCCCCEEEeCCCCc
Confidence               333333 466677777888888764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.25  E-value=1.8e-11  Score=119.78  Aligned_cols=172  Identities=19%  Similarity=0.124  Sum_probs=108.2

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT  199 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l  199 (349)
                      .+++.|.+.++....                 +|..+.  ++|++|++++|.++.+|    +.+++|++|++++|.++.+
T Consensus        59 ~~L~~L~Ls~n~L~~-----------------lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~i  115 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-----------------LPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTL  115 (571)
T ss_dssp             TTCSEEECCSSCCSC-----------------CCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC
T ss_pred             CCccEEEeCCCCCCc-----------------cCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCc
Confidence            577777777665542                 555453  67899999999988888    3468899999999988888


Q ss_pred             chhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC------CCCCCccEEEEeecCCCCCCcccccCCccccc
Q 041418          200 VDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQK  273 (349)
Q Consensus       200 p~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~  273 (349)
                      |. +.+  +|++|+-.-.++..+.    ..+++|+.|++++|      ..+++|+.|++++|.++..+.  +        
T Consensus       116 p~-l~~--~L~~L~Ls~N~l~~lp----~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp~--l--------  178 (571)
T 3cvr_A          116 PE-LPA--SLKHLDVDNNQLTMLP----ELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPE--L--------  178 (571)
T ss_dssp             CC-CCT--TCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC--C--------
T ss_pred             ch-hhc--CCCEEECCCCcCCCCC----CcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcch--h--------
Confidence            87 543  4444431101111110    12345555555555      233455566666555544221  1        


Q ss_pred             ccccccccccccccceeeeeccCCCCCCCcccCCCCCC-------CEEEecCCCHHHHHhhhhcccccccccceeeeccc
Q 041418          274 ADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSL-------NKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEM  346 (349)
Q Consensus       274 L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L-------~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~  346 (349)
                              +  ++|+.|++++|. +..+|. +..  +|       +.|++++|.   +..+......+.++..+.+.+|.
T Consensus       179 --------~--~~L~~L~Ls~N~-L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~---l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          179 --------P--ESLEALDVSTNL-LESLPA-VPV--RNHHSEETEIFFRCRENR---ITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             --------C--TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC---CCCCCGGGGGSCTTEEEECCSSS
T ss_pred             --------h--CCCCEEECcCCC-CCchhh-HHH--hhhcccccceEEecCCCc---ceecCHHHhcCCCCCEEEeeCCc
Confidence                    2  789999999986 889998 654  77       999999987   23444444556777777888876


Q ss_pred             cc
Q 041418          347 MS  348 (349)
Q Consensus       347 ~~  348 (349)
                      ++
T Consensus       242 l~  243 (571)
T 3cvr_A          242 LS  243 (571)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.24  E-value=4.8e-11  Score=100.57  Aligned_cols=106  Identities=16%  Similarity=0.105  Sum_probs=75.1

Q ss_pred             CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEc
Q 041418          160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLA  239 (349)
Q Consensus       160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~  239 (349)
                      ++|++|++++|.++.+|..+ .++++|++|++++|.++.+|....                                   
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f-----------------------------------   74 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKEL-SNYKHLTLIDLSNNRISTLSNQSF-----------------------------------   74 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGG-GGCTTCCEEECCSSCCCCCCTTTT-----------------------------------
T ss_pred             CCCCEEECCCCcCchhHHHh-hcccCCCEEECCCCcCCEeCHhHc-----------------------------------
Confidence            45667777777777666555 677777777777776666654210                                   


Q ss_pred             cCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecC
Q 041418          240 EYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWW  318 (349)
Q Consensus       240 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~  318 (349)
                        ..+++|+.|+|++|.++..+...+                +.+++|+.|++++|. +..+|.. +..+++|+.|++++
T Consensus        75 --~~l~~L~~L~Ls~N~l~~i~~~~f----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           75 --SNMTQLLTLILSYNRLRCIPPRTF----------------DGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             --TTCTTCCEEECCSSCCCBCCTTTT----------------TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred             --cCCCCCCEEECCCCccCEeCHHHh----------------CCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence              345667777888888776654444                456788899999987 7788764 77899999999998


Q ss_pred             CC
Q 041418          319 PQ  320 (349)
Q Consensus       319 ~~  320 (349)
                      +|
T Consensus       136 N~  137 (193)
T 2wfh_A          136 NP  137 (193)
T ss_dssp             SC
T ss_pred             CC
Confidence            76

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.22  E-value=1.5e-11  Score=121.07  Aligned_cols=163  Identities=13%  Similarity=0.099  Sum_probs=106.3

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc--cchhhhccccchhhh--------------hCCCCC
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH--TVDEFWKMKKLRHLN--------------FGLSCL  219 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~--------------~~l~~L  219 (349)
                      ++.+++|+.|+++++....+|..+ ..+++|++|++++|.+..  ++..+..+++|++|+              ..+++|
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred             hhccccccccCccccchhHHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence            344455555555554445566655 778888888888886433  233357778888775              457888


Q ss_pred             CeeeccC-----------C-----------CCCCCccEEEEccC-----------CCCCCccEEEEe----ecCCCCCCc
Q 041418          220 KSLKLAN-----------E-----------SKMPWLSKIVLAEY-----------LFPHSLTHLSFS----NTDRMDDPM  262 (349)
Q Consensus       220 ~~L~l~~-----------~-----------~~~~~L~~L~l~~~-----------~~~~~L~~L~L~----~~~l~~~~~  262 (349)
                      ++|++.+           .           ..+++|++|+++.+           ..+++|+.|+++    .+.+++.+.
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            8888862           1           24788888888555           237889999997    345554332


Q ss_pred             c-----cccCCcccccccc---c--ccc------cccccccceeeeeccCCCC--CCCcccCCCCCCCEEEecCCC
Q 041418          263 P-----VLETLPLLQKADF---W--TMG------NAAMPKLECLIINPCAYLK--KMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       263 ~-----~l~~l~~L~~L~~---~--~~~------~~~~~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      +     .+..+++|+.|+-   -  ...      ...+++|+.|++++|. +.  .++..+..+++|++|++++|+
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence            2     2455677777761   0  000      0236789999998887 43  345455778999999999997

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.22  E-value=4.5e-11  Score=102.86  Aligned_cols=148  Identities=7%  Similarity=0.075  Sum_probs=105.1

Q ss_pred             CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-h-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEcc
Q 041418          163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-E-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAE  240 (349)
Q Consensus       163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~  240 (349)
                      +.+++++|.++.+|..+   ...+++|++++|.++.++. . ++.++          +|+.|+++    -..++.+.-..
T Consensus        14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~----------~L~~L~L~----~N~i~~i~~~~   76 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLP----------QLRKINFS----NNKITDIEEGA   76 (220)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCT----------TCCEEECC----SSCCCEECTTT
T ss_pred             CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCC----------CCCEEECC----CCcCCEECHHH
Confidence            68999999999999876   3467899999999988843 2 45444          44444442    11222221111


Q ss_pred             CCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCC-CcccCCCCCCCEEEecCC
Q 041418          241 YLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM-PEHLWCIKSLNKFDCWWP  319 (349)
Q Consensus       241 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~  319 (349)
                      ...+++|+.|++++|.++..+...+                +.+++|++|++++|. +..+ |..+..+++|++|++++|
T Consensus        77 ~~~l~~L~~L~Ls~N~l~~~~~~~~----------------~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A           77 FEGASGVNEILLTSNRLENVQHKMF----------------KGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCGGGG----------------TTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS
T ss_pred             hCCCCCCCEEECCCCccCccCHhHh----------------cCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC
Confidence            1567889999999999887665444                457889999999988 5555 667899999999999998


Q ss_pred             CHHHHHhhhh-cccccccccceeeecccc
Q 041418          320 QPELRQKLRE-FEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       320 ~~~~~~~l~~-~~~~i~~ip~i~~~~~~~  347 (349)
                      .   +..+.+ .+..+..+..+.+.+|.+
T Consensus       140 ~---l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          140 Q---ITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             C---CCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             c---CCEECHHHhcCCCCCCEEEecCcCC
Confidence            7   333433 566677777788887765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.21  E-value=2.9e-11  Score=111.53  Aligned_cols=59  Identities=15%  Similarity=0.260  Sum_probs=48.4

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc-cccchh-hhccccchhh
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI-DHTVDE-FWKMKKLRHL  212 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l-~~lp~~-i~~L~~L~~L  212 (349)
                      +|..+  .+++++|+|++|+|+.+|...|+++++|++|+|++|.+ +.+|.. +.++++|+.+
T Consensus        24 iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            67666  36899999999999999988779999999999999965 557654 5777776654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.20  E-value=3.4e-12  Score=125.71  Aligned_cols=34  Identities=18%  Similarity=-0.032  Sum_probs=15.8

Q ss_pred             CCCCCCEEeecCCCCcccchhHHhcCcCCcEEecc
Q 041418          158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMP  192 (349)
Q Consensus       158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~  192 (349)
                      ++++|++|++++|.+..+|..+ .++++|+.|+++
T Consensus       218 ~~~~L~~L~L~~~~~~~l~~~~-~~~~~L~~L~l~  251 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILELVGFF-KAAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEECSSCBGGGGHHHH-HHCTTCCEEEEC
T ss_pred             hCCCCcEEeccCccHHHHHHHH-hhhhHHHhhccc
Confidence            3444555555554444444333 444444444443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.20  E-value=4e-12  Score=117.81  Aligned_cols=188  Identities=14%  Similarity=0.155  Sum_probs=100.4

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhc----cCcccc---------CCcccCCC-----CCCCEEeecCCCCcccchh-H-
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICG----MFKLLR---------YPSGIENL-----FLLRYLKLNIPSLKSLSSS-L-  179 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~----~l~~L~---------lp~~i~~l-----~~L~~L~l~~~~l~~lp~~-i-  179 (349)
                      ++++.|.+.++.........+...+.    +++.|.         .+..+..+     ++|++|++++|.++..+.. + 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            44777777766654332222223333    334443         12333333     8899999999988865543 2 


Q ss_pred             --HhcC-cCCcEEeccCcCccccchh-hhc-----cccchhhh------------------hCCC-CCCeeeccCC----
Q 041418          180 --LSNL-LNLYTLDMPFSYIDHTVDE-FWK-----MKKLRHLN------------------FGLS-CLKSLKLANE----  227 (349)
Q Consensus       180 --f~~l-~~L~~L~l~~~~l~~lp~~-i~~-----L~~L~~L~------------------~~l~-~L~~L~l~~~----  227 (349)
                        |..+ ++|++|++++|.++..+.. +..     .++|++|+                  ..++ +|++|+++++    
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              1444 7899999999987776542 222     13455544                  1121 4444444411    


Q ss_pred             ----------CCC-CCccEEEEccC---------------CCCCCccEEEEeecCCCCCCcccccCCccccccccccccc
Q 041418          228 ----------SKM-PWLSKIVLAEY---------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGN  281 (349)
Q Consensus       228 ----------~~~-~~L~~L~l~~~---------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~  281 (349)
                                ..+ ++|+.|++++|               ...++|+.|++++|.+...+...+.            ...
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~------------~~~  249 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK------------LLK  249 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH------------HTT
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH------------HHH
Confidence                      111 24444444444               0123444444444444433322211            011


Q ss_pred             ccccccceeeeeccCCCCC--------CCcccCCCCCCCEEEecCCC
Q 041418          282 AAMPKLECLIINPCAYLKK--------MPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       282 ~~~~~L~~L~l~~c~~l~~--------lp~~l~~l~~L~~L~l~~~~  320 (349)
                      ..+++|+.|++++|. +..        ++..+..+++|+.|++++++
T Consensus       250 ~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          250 DSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             hcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            456788889998886 333        33346678888888888876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.19  E-value=7.9e-11  Score=101.97  Aligned_cols=118  Identities=18%  Similarity=0.224  Sum_probs=76.8

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT  199 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l  199 (349)
                      ++++.|.+.++.....                .|..++.+++|++|++++|.++.+|...|+.+++|++|++++|.++.+
T Consensus        40 ~~L~~L~Ls~n~i~~~----------------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL----------------EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             TTCSEEECCSSCCCCC----------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCEEEcCCCccCcc----------------CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence            6677777776655421                356688889999999999999999887768899999999999988888


Q ss_pred             chh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCC
Q 041418          200 VDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETL  268 (349)
Q Consensus       200 p~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l  268 (349)
                      |.. +..+++|++|          ++++    ..++.+. .+...+++|+.|++++|.+...+...+..+
T Consensus       104 ~~~~~~~l~~L~~L----------~Ls~----N~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  158 (229)
T 3e6j_A          104 PSAVFDRLVHLKEL----------FMCC----NKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRL  158 (229)
T ss_dssp             CTTTTTTCTTCCEE----------ECCS----SCCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             ChhHhCcchhhCeE----------eccC----CcccccC-cccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence            765 3444444433          3320    1111110 000355677777777777766554444333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.19  E-value=1.1e-10  Score=96.62  Aligned_cols=107  Identities=21%  Similarity=0.205  Sum_probs=76.1

Q ss_pred             CCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEc
Q 041418          160 FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLA  239 (349)
Q Consensus       160 ~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~  239 (349)
                      ++|++|++++|.++.+|...|+++++|++|++++|.++.+|....                                   
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------------------------------   72 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF-----------------------------------   72 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT-----------------------------------
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHc-----------------------------------
Confidence            466777777777776666554667777777777776666654311                                   


Q ss_pred             cCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecC
Q 041418          240 EYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWW  318 (349)
Q Consensus       240 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~  318 (349)
                        ..+++|+.|++++|.++..+...+                +.+++|+.|++++|. +..+|.. +..+++|++|++++
T Consensus        73 --~~l~~L~~L~l~~N~l~~~~~~~~----------------~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           73 --DKLTKLTILYLHENKLQSLPNGVF----------------DKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             --TTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             --cCCCccCEEECCCCCccccCHHHh----------------hCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecC
Confidence              345667777888888776554333                456789999999986 7788876 47799999999999


Q ss_pred             CC
Q 041418          319 PQ  320 (349)
Q Consensus       319 ~~  320 (349)
                      |+
T Consensus       134 N~  135 (177)
T 2o6r_A          134 NP  135 (177)
T ss_dssp             SC
T ss_pred             CC
Confidence            87

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.19  E-value=5.1e-11  Score=100.27  Aligned_cols=62  Identities=11%  Similarity=0.082  Sum_probs=44.0

Q ss_pred             CCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      .+++|+.|++++|.+++.+...+                +.+++|+.|++++|...+..|..+..+++|++|++++++
T Consensus        76 ~l~~L~~L~Ls~N~l~~~~~~~~----------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           76 GASHIQELQLGENKIKEISNKMF----------------LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSS----------------TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CcccCCEEECCCCcCCccCHHHh----------------cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            45666777777777765543333                356778888888887444446678888999999998876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.17  E-value=1.5e-11  Score=98.87  Aligned_cols=58  Identities=21%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             CCCccEEEEeecCCCCCCc-ccccCCcccccccccccccccccccceeeeeccCCCCCCCc----ccCCCCCCCEEEecC
Q 041418          244 PHSLTHLSFSNTDRMDDPM-PVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE----HLWCIKSLNKFDCWW  318 (349)
Q Consensus       244 ~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~----~l~~l~~L~~L~l~~  318 (349)
                      +++|+.|++++|.+++.+. ..+                +.+++|+.|++++|. +..+|.    .++.+++|+.|++++
T Consensus        87 l~~L~~L~ls~N~i~~~~~~~~~----------------~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           87 CPNLTHLNLSGNKIKDLSTIEPL----------------KKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCCEEECTTSCCCSHHHHGGG----------------GGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCCEEECCCCcCCChHHHHHH----------------hhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence            4556666677776654221 111                457788888888886 666765    577788888888764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.16  E-value=2.5e-11  Score=100.59  Aligned_cols=135  Identities=18%  Similarity=0.123  Sum_probs=86.0

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCc-CCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCc
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLL-NLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWL  233 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~-~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L  233 (349)
                      .+.++.+|+.|++++|.++.+|. + ..+. +|++|++++|.++.+ ..++.++          +|+.|+++    -..+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~-~-~~~~~~L~~L~Ls~N~l~~~-~~l~~l~----------~L~~L~Ls----~N~l   76 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIEN-L-GATLDQFDAIDFSDNEIRKL-DGFPLLR----------RLKTLLVN----NNRI   76 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCC-G-GGGTTCCSEEECCSSCCCEE-CCCCCCS----------SCCEEECC----SSCC
T ss_pred             hcCCcCCceEEEeeCCCCchhHH-h-hhcCCCCCEEECCCCCCCcc-cccccCC----------CCCEEECC----CCcc
Confidence            35566777888888887777754 3 4444 788888888877666 2343332          33333332    1112


Q ss_pred             cEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc----cCCCC
Q 041418          234 SKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH----LWCIK  309 (349)
Q Consensus       234 ~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~----l~~l~  309 (349)
                      ..+.-.-...+++|+.|++++|.+...+.  +      .       ..+.+++|+.|++++|+ +..+|..    ++.++
T Consensus        77 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~--~------~-------~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~  140 (176)
T 1a9n_A           77 CRIGEGLDQALPDLTELILTNNSLVELGD--L------D-------PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVP  140 (176)
T ss_dssp             CEECSCHHHHCTTCCEEECCSCCCCCGGG--G------G-------GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCT
T ss_pred             cccCcchhhcCCCCCEEECCCCcCCcchh--h------H-------hhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCC
Confidence            22210000346788888888888754321  1      0       11467899999999988 7788875    88899


Q ss_pred             CCCEEEecCCCHH
Q 041418          310 SLNKFDCWWPQPE  322 (349)
Q Consensus       310 ~L~~L~l~~~~~~  322 (349)
                      +|+.|++++++.+
T Consensus       141 ~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          141 QVRVLDFQKVKLK  153 (176)
T ss_dssp             TCSEETTEECCHH
T ss_pred             ccceeCCCcCCHH
Confidence            9999999999843

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.15  E-value=8.9e-11  Score=96.34  Aligned_cols=138  Identities=19%  Similarity=0.149  Sum_probs=94.3

Q ss_pred             CCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418          118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      ..++++.|.+.++....   .            .+|..++.+++|++|++++|.++.+ ..+ +.+++|++|++++|.+.
T Consensus        22 ~~~~L~~L~l~~n~l~~---~------------~i~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~   84 (168)
T 2ell_A           22 TPAAVRELVLDNCKSND---G------------KIEGLTAEFVNLEFLSLINVGLISV-SNL-PKLPKLKKLELSENRIF   84 (168)
T ss_dssp             CTTSCSEEECCSCBCBT---T------------BCSSCCGGGGGCCEEEEESSCCCCC-SSC-CCCSSCCEEEEESCCCC
T ss_pred             CcccCCEEECCCCCCCh---h------------hHHHHHHhCCCCCEEeCcCCCCCCh-hhh-ccCCCCCEEECcCCcCc
Confidence            34789999988876530   0            1566678888999999999988887 555 88999999999999777


Q ss_pred             c-cchhhhccccchhhhhCCCCCCeeeccCC--CCCCCccEEEEccCCCCCCccEEEEeecCCCCCCc---ccccCCccc
Q 041418          198 H-TVDEFWKMKKLRHLNFGLSCLKSLKLANE--SKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPM---PVLETLPLL  271 (349)
Q Consensus       198 ~-lp~~i~~L~~L~~L~~~l~~L~~L~l~~~--~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~l~~L  271 (349)
                      . +|..++.+++|++|          +++++  ...+.+..+     ..+++|+.|++++|.++..+.   ..+      
T Consensus        85 ~~~~~~~~~l~~L~~L----------~Ls~N~l~~~~~~~~l-----~~l~~L~~L~l~~N~l~~~~~~~~~~~------  143 (168)
T 2ell_A           85 GGLDMLAEKLPNLTHL----------NLSGNKLKDISTLEPL-----KKLECLKSLDLFNCEVTNLNDYRESVF------  143 (168)
T ss_dssp             SCCCHHHHHCTTCCEE----------ECBSSSCCSSGGGGGG-----SSCSCCCEEECCSSGGGTSTTHHHHHH------
T ss_pred             hHHHHHHhhCCCCCEE----------eccCCccCcchhHHHH-----hcCCCCCEEEeeCCcCcchHHHHHHHH------
Confidence            7 66666555554444          33210  000001111     567889999999998876553   122      


Q ss_pred             ccccccccccccccccceeeeeccCCCCCCCcc
Q 041418          272 QKADFWTMGNAAMPKLECLIINPCAYLKKMPEH  304 (349)
Q Consensus       272 ~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~  304 (349)
                                ..+++|+.|++++|. ..++|.+
T Consensus       144 ----------~~l~~L~~L~l~~n~-~~~~~~~  165 (168)
T 2ell_A          144 ----------KLLPQLTYLDGYDRE-DQEAPDS  165 (168)
T ss_dssp             ----------TTCSSCCEETTEETT-SCBCCSS
T ss_pred             ----------HhCccCcEecCCCCC-hhhcccc
Confidence                      467889999999987 7777763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.15  E-value=8.3e-11  Score=115.31  Aligned_cols=121  Identities=18%  Similarity=0.160  Sum_probs=86.6

Q ss_pred             CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEcc
Q 041418          161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAE  240 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~  240 (349)
                      .|++|++++|.++.+|. + +++++|++|++++|.++.+|..++++++|++|          ++++    ..++.+.  +
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L----------~Ls~----N~l~~lp--~  503 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNRLRALPPALAALRCLEVL----------QASD----NALENVD--G  503 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-G-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEE----------ECCS----SCCCCCG--G
T ss_pred             CceEEEecCCCCCCCcC-c-cccccCcEeecCcccccccchhhhcCCCCCEE----------ECCC----CCCCCCc--c
Confidence            57888999998888886 5 88999999999999888888888766554444          3321    0111111  1


Q ss_pred             CCCCCCccEEEEeecCCCCCC-cccccCCcccccccccccccccccccceeeeeccCCCCCCCcccC----CCCCCCEEE
Q 041418          241 YLFPHSLTHLSFSNTDRMDDP-MPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLW----CIKSLNKFD  315 (349)
Q Consensus       241 ~~~~~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~----~l~~L~~L~  315 (349)
                      -..+++|+.|+|++|.+++.+ +..+                +.+++|+.|++++|+ +..+|+.+.    .+|+|+.|+
T Consensus       504 l~~l~~L~~L~Ls~N~l~~~~~p~~l----------------~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          504 VANLPRLQELLLCNNRLQQSAAIQPL----------------VSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GTTCSSCCEEECCSSCCCSSSTTGGG----------------GGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred             cCCCCCCcEEECCCCCCCCCCCcHHH----------------hcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence            166788889999999887764 4444                567889999999987 777776443    379999986


Q ss_pred             e
Q 041418          316 C  316 (349)
Q Consensus       316 l  316 (349)
                      +
T Consensus       567 l  567 (567)
T 1dce_A          567 T  567 (567)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.13  E-value=7.9e-11  Score=118.86  Aligned_cols=112  Identities=13%  Similarity=0.043  Sum_probs=80.9

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMP  231 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~  231 (349)
                      .|..+..++.|+.|+|++|.+..+|..+ .++++|++|+|++|.++.+|..+++|                         
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l-------------------------  269 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANI-FKYDFLTRLYLNGNSLTELPAEIKNL-------------------------  269 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGG-GGCCSCSCCBCTTSCCSCCCGGGGGG-------------------------
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhh-cCCCCCCEEEeeCCcCcccChhhhCC-------------------------
Confidence            4566788888888888888888888887 68888888888888777888766433                         


Q ss_pred             CccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccCCCCCC
Q 041418          232 WLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSL  311 (349)
Q Consensus       232 ~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L  311 (349)
                                   ++|+.|+|++|.++..+ ..+                +.+++|+.|+|++|. ++.+|..++.+++|
T Consensus       270 -------------~~L~~L~Ls~N~l~~lp-~~~----------------~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L  318 (727)
T 4b8c_D          270 -------------SNLRVLDLSHNRLTSLP-AEL----------------GSCFQLKYFYFFDNM-VTTLPWEFGNLCNL  318 (727)
T ss_dssp             -------------TTCCEEECTTSCCSSCC-SSG----------------GGGTTCSEEECCSSC-CCCCCSSTTSCTTC
T ss_pred             -------------CCCCEEeCcCCcCCccC-hhh----------------cCCCCCCEEECCCCC-CCccChhhhcCCCc
Confidence                         45566667777766332 222                457788888888876 78888888888889


Q ss_pred             CEEEecCCC
Q 041418          312 NKFDCWWPQ  320 (349)
Q Consensus       312 ~~L~l~~~~  320 (349)
                      +.|++++|+
T Consensus       319 ~~L~L~~N~  327 (727)
T 4b8c_D          319 QFLGVEGNP  327 (727)
T ss_dssp             CCEECTTSC
T ss_pred             cEEeCCCCc
Confidence            999888886

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.07  E-value=1.2e-10  Score=93.53  Aligned_cols=125  Identities=18%  Similarity=0.146  Sum_probs=81.9

Q ss_pred             CCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcc
Q 041418          118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      ..++++.+.+.++....   .            .+|..++.+++|++|++++|.++.+ ..+ +++++|++|++++|.++
T Consensus        15 ~~~~l~~L~l~~n~l~~---~------------~~~~~~~~l~~L~~L~l~~n~l~~~-~~~-~~l~~L~~L~Ls~n~i~   77 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNE---G------------KLEGLTDEFEELEFLSTINVGLTSI-ANL-PKLNKLKKLELSDNRVS   77 (149)
T ss_dssp             CGGGCSEEECTTCBCBT---T------------BCCSCCTTCTTCCEEECTTSCCCCC-TTC-CCCTTCCEEECCSSCCC
T ss_pred             CCccCeEEEccCCcCCh---h------------HHHHHHhhcCCCcEEECcCCCCCCc-hhh-hcCCCCCEEECCCCccc
Confidence            34678888888765530   0            1667788899999999999999888 555 89999999999999887


Q ss_pred             c-cchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE-ccCCCCCCccEEEEeecCCCCCCc---ccccCCcccc
Q 041418          198 H-TVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL-AEYLFPHSLTHLSFSNTDRMDDPM---PVLETLPLLQ  272 (349)
Q Consensus       198 ~-lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l-~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~l~~L~  272 (349)
                      . +|..++.+++|++|          +++++    .+..+.. ..-..+++|+.|++++|.+++.+.   ..++.+++|+
T Consensus        78 ~~~~~~~~~l~~L~~L----------~ls~N----~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           78 GGLEVLAEKCPNLTHL----------NLSGN----KIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             SCTHHHHHHCTTCCEE----------ECTTS----CCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             chHHHHhhhCCCCCEE----------ECCCC----cCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            7 77766555544444          33200    1111100 000567889999999998876654   3444444444


Q ss_pred             c
Q 041418          273 K  273 (349)
Q Consensus       273 ~  273 (349)
                      .
T Consensus       144 ~  144 (149)
T 2je0_A          144 Y  144 (149)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.05  E-value=2.3e-10  Score=112.84  Aligned_cols=89  Identities=13%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             HhhHHHHHhhhCCCCCCchhHHhHhccCCCCceecHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCceeeeecCCCCc
Q 041418            4 TMSLGLQCIIYCMSPFCLKPCFLYFSVFPAHLEISTRHVYQLWIAEGFIEDNNEATAKKYLEQLINRGFVEANKRRAGGT   83 (349)
Q Consensus         4 ~~i~~~L~lSY~~L~~~lk~cFl~~a~Fp~~~~i~~~~Li~~wia~g~i~~~~~~~~~~~~~~L~~~sll~~~~~~~~~~   83 (349)
                      ..|..+++.||+.||++.|.||++||+||+|+.|+.+.++.+|.++       .+.++.++++|+++||++....   +.
T Consensus       362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~  431 (591)
T 1z6t_A          362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GK  431 (591)
T ss_dssp             HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CC
Confidence            4688999999999999999999999999999999999999999654       3447889999999999997653   33


Q ss_pred             eeeEEeChhHHHHHHHhhc
Q 041418           84 INTCSIPGRCRPVLLGVAS  102 (349)
Q Consensus        84 ~~~~~mHdli~dla~~i~~  102 (349)
                      ..+|+|||++|++++....
T Consensus       432 ~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          432 SFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             EEEEECCHHHHHHHHHHTG
T ss_pred             ccEEEEcHHHHHHHHhhhh
Confidence            3579999999999998843

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.02  E-value=1.5e-10  Score=116.94  Aligned_cols=100  Identities=19%  Similarity=0.197  Sum_probs=73.5

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMP  231 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~  231 (349)
                      +|..+.++++|++|+|++|.++.+|..+ +++++|++|+|++|.++.+|..+++|++|++|+          ++++    
T Consensus       239 l~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~----------L~~N----  303 (727)
T 4b8c_D          239 ISANIFKYDFLTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY----------FFDN----  303 (727)
T ss_dssp             CCGGGGGCCSCSCCBCTTSCCSCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE----------CCSS----
T ss_pred             CChhhcCCCCCCEEEeeCCcCcccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE----------CCCC----
Confidence            7777888999999999999999999988 999999999999999999999888777666554          3200    


Q ss_pred             CccEEEEccCCCCCCccEEEEeecCCCCCCcccccC
Q 041418          232 WLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLET  267 (349)
Q Consensus       232 ~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~  267 (349)
                      .+..+.-. -..+++|+.|+|++|.+++.++..+..
T Consensus       304 ~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          304 MVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCCccChh-hhcCCCccEEeCCCCccCCCChHHHhh
Confidence            11111100 055677788888888877665555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.01  E-value=1.1e-09  Score=90.49  Aligned_cols=100  Identities=19%  Similarity=0.173  Sum_probs=66.9

Q ss_pred             CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC
Q 041418          163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY  241 (349)
Q Consensus       163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~  241 (349)
                      +.++++++.++.+|..+ .  ++|++|++++|.++.+|+ .+                                      
T Consensus        15 ~~l~~~~n~l~~iP~~~-~--~~L~~L~Ls~N~l~~~~~~~~--------------------------------------   53 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI-P--TDKQRLWLNNNQITKLEPGVF--------------------------------------   53 (174)
T ss_dssp             SEEECCSSCCSSCCSCC-C--TTCSEEECCSSCCCCCCTTTT--------------------------------------
T ss_pred             cEEEeCCCCCCccCCCc-C--CCCcEEEeCCCCccccCHHHh--------------------------------------
Confidence            67788888888888766 3  778888888887777744 22                                      


Q ss_pred             CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418          242 LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       242 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~  320 (349)
                      ..+++|+.|+|++|.++..+...+                +.+++|+.|++++|. +..+|.. +..+++|++|++++|+
T Consensus        54 ~~l~~L~~L~Ls~N~l~~i~~~~~----------------~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           54 DHLVNLQQLYFNSNKLTAIPTGVF----------------DKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             cCCcCCCEEECCCCCCCccChhHh----------------CCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCC
Confidence            233455666666666665443322                345667777777765 6677664 6777788888887766

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.00  E-value=5e-11  Score=117.29  Aligned_cols=161  Identities=16%  Similarity=0.171  Sum_probs=93.0

Q ss_pred             CCCCCCCEEeecCCC--Cc--ccchhHHhcCcCCcEEeccCc-Cccccchhhhccccchhhh------------------
Q 041418          157 ENLFLLRYLKLNIPS--LK--SLSSSLLSNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLN------------------  213 (349)
Q Consensus       157 ~~l~~L~~L~l~~~~--l~--~lp~~if~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~------------------  213 (349)
                      ..+++|++|++++|.  +.  .++.-+ .++++|++|++++| .++.+|..+.++++|++|+                  
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            356688888888875  22  222222 56688888888887 6666666566666555552                  


Q ss_pred             --------------------------hCCCCCCeeeccCC-----------CCCCCccEEEEccC----------CCCCC
Q 041418          214 --------------------------FGLSCLKSLKLANE-----------SKMPWLSKIVLAEY----------LFPHS  246 (349)
Q Consensus       214 --------------------------~~l~~L~~L~l~~~-----------~~~~~L~~L~l~~~----------~~~~~  246 (349)
                                                ..+++|++|++++.           ..+++|+.|++.+|          ..+++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~  339 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD  339 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCC
Confidence                                      13566677766521           46677777777776          24677


Q ss_pred             ccEEEEeec---------CCCCCCccccc-CCcccccccc----c----cccc-ccccccceeeee-----ccCCCCCCC
Q 041418          247 LTHLSFSNT---------DRMDDPMPVLE-TLPLLQKADF----W----TMGN-AAMPKLECLIIN-----PCAYLKKMP  302 (349)
Q Consensus       247 L~~L~L~~~---------~l~~~~~~~l~-~l~~L~~L~~----~----~~~~-~~~~~L~~L~l~-----~c~~l~~lp  302 (349)
                      |+.|++..|         .++...+..+. .+++|+.|..    .    .... ..+++|+.|+++     +|..++..|
T Consensus       340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~  419 (594)
T 2p1m_B          340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP  419 (594)
T ss_dssp             CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred             CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence            888877442         23222222222 3566666650    0    0000 246788888888     456666544


Q ss_pred             c------ccCCCCCCCEEEecC
Q 041418          303 E------HLWCIKSLNKFDCWW  318 (349)
Q Consensus       303 ~------~l~~l~~L~~L~l~~  318 (349)
                      .      .+..+++|+.|++++
T Consensus       420 ~~~~~~~l~~~~~~L~~L~L~~  441 (594)
T 2p1m_B          420 LDIGFGAIVEHCKDLRRLSLSG  441 (594)
T ss_dssp             THHHHHHHHHHCTTCCEEECCS
T ss_pred             hhhHHHHHHhhCCCccEEeecC
Confidence            2      134455666666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.00  E-value=1.4e-09  Score=89.46  Aligned_cols=101  Identities=21%  Similarity=0.124  Sum_probs=72.1

Q ss_pred             CCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEcc
Q 041418          162 LRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAE  240 (349)
Q Consensus       162 L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~  240 (349)
                      .+.+++++|.++.+|..+   .++|++|++++|.++.+++. +                                     
T Consensus        11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~-------------------------------------   50 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVF-------------------------------------   50 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTT-------------------------------------
T ss_pred             CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhh-------------------------------------
Confidence            467888888888888766   37888888888888877542 2                                     


Q ss_pred             CCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCC
Q 041418          241 YLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWP  319 (349)
Q Consensus       241 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~  319 (349)
                       ..+++|+.|+|++|.++..+...+                ..+++|+.|++++|. +..+|+. +..+++|+.|+++++
T Consensus        51 -~~l~~L~~L~Ls~N~l~~l~~~~f----------------~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           51 -DRLTQLTRLDLDNNQLTVLPAGVF----------------DKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             -TTCTTCSEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             -cCcccCCEEECCCCCcCccChhhc----------------cCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence             234556666777777765554333                346777888888876 7777664 777888888888887


Q ss_pred             C
Q 041418          320 Q  320 (349)
Q Consensus       320 ~  320 (349)
                      +
T Consensus       113 ~  113 (170)
T 3g39_A          113 P  113 (170)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.99  E-value=2.7e-10  Score=112.08  Aligned_cols=73  Identities=18%  Similarity=0.181  Sum_probs=44.1

Q ss_pred             hcCcCCcEEeccCcCccc--cchhhhccccchhhh--------------hCCCCCCeeeccC----------C-------
Q 041418          181 SNLLNLYTLDMPFSYIDH--TVDEFWKMKKLRHLN--------------FGLSCLKSLKLAN----------E-------  227 (349)
Q Consensus       181 ~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~--------------~~l~~L~~L~l~~----------~-------  227 (349)
                      ..+++|++|++++|.++.  ++..+.++++|++|+              ..+++|+.|++.+          .       
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            456677777777775432  222245666666665              2467777776611          0       


Q ss_pred             ---CCCCCccEEEEccC-----------CCCCCccEEEEe
Q 041418          228 ---SKMPWLSKIVLAEY-----------LFPHSLTHLSFS  253 (349)
Q Consensus       228 ---~~~~~L~~L~l~~~-----------~~~~~L~~L~L~  253 (349)
                         ..+++|+.|.+..+           ..+++|+.|+++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence               23677777766544           246778888887

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.99  E-value=1.4e-09  Score=91.49  Aligned_cols=124  Identities=15%  Similarity=0.102  Sum_probs=95.9

Q ss_pred             CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccCC
Q 041418          163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEYL  242 (349)
Q Consensus       163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~~  242 (349)
                      ++++++++.++++|..+   ..+|++|++++|.++.+|..+..                                     
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~-------------------------------------   52 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSN-------------------------------------   52 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGG-------------------------------------
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhc-------------------------------------
Confidence            68999999999999876   36899999999999999865542                                     


Q ss_pred             CCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCCH
Q 041418          243 FPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQP  321 (349)
Q Consensus       243 ~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~  321 (349)
                       +++|+.|++++|.++..+...+                ..+++|+.|++++|. +..+|+ .+..+++|+.|++++|. 
T Consensus        53 -l~~L~~L~Ls~N~i~~i~~~~f----------------~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~-  113 (193)
T 2wfh_A           53 -YKHLTLIDLSNNRISTLSNQSF----------------SNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGND-  113 (193)
T ss_dssp             -CTTCCEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC-
T ss_pred             -ccCCCEEECCCCcCCEeCHhHc----------------cCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCC-
Confidence             3556677778888876654444                457889999999987 777765 58899999999999987 


Q ss_pred             HHHHhhhh-cccccccccceeeecccc
Q 041418          322 ELRQKLRE-FEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       322 ~~~~~l~~-~~~~i~~ip~i~~~~~~~  347 (349)
                        +..+.. .+..+.++..+.+.+|-+
T Consensus       114 --l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          114 --ISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             --CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             --CCeeChhhhhcCccccEEEeCCCCe
Confidence              234444 466677777888887754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.95  E-value=3e-12  Score=108.35  Aligned_cols=60  Identities=22%  Similarity=0.185  Sum_probs=47.3

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN  213 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~  213 (349)
                      +|..++.+++|++|++++|.++.+| .+ +++++|++|++++|.++.+|..+..+++|++|+
T Consensus        40 l~~~~~~l~~L~~L~ls~n~l~~l~-~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~   99 (198)
T 1ds9_A           40 MDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             CHHHHHHTTTCSEEECSEEEESCCC-CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred             hhHHHhcCCCCCEEECCCCCCcccc-cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence            4457788888999999999888888 66 889999999999998888887666555554443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.88  E-value=4.1e-09  Score=88.47  Aligned_cols=107  Identities=21%  Similarity=0.186  Sum_probs=57.0

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchh-HHhcCcCCcEEeccCcCcccc-chhhhccccchhhhhCCCCCCeeeccCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSS-LLSNLLNLYTLDMPFSYIDHT-VDEFWKMKKLRHLNFGLSCLKSLKLANESK  229 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~-if~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~l~~L~~L~l~~~~~  229 (349)
                      +|..+..  +|++|++++|.++.+|.. +|+++++|++|++++|.++.+ |..++++++|++|          +++    
T Consensus        23 ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L----------~Ls----   86 (192)
T 1w8a_A           23 IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL----------QLG----   86 (192)
T ss_dssp             CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE----------ECC----
T ss_pred             CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEE----------ECC----
Confidence            4444433  677788888777777653 237778888888887777666 4455554444333          221    


Q ss_pred             CCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccc
Q 041418          230 MPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKA  274 (349)
Q Consensus       230 ~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L  274 (349)
                      -..++.+.-.....+++|+.|++++|.+++..+..++.+++|++|
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence            011111110000345566666666666655444444444444333

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.85  E-value=1.5e-08  Score=83.72  Aligned_cols=127  Identities=15%  Similarity=0.127  Sum_probs=95.1

Q ss_pred             CCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC
Q 041418          162 LRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY  241 (349)
Q Consensus       162 L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~  241 (349)
                      .+.++++++.++.+|..+   .++|++|++++|.++.+|....                                     
T Consensus         9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~-------------------------------------   48 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVF-------------------------------------   48 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTT-------------------------------------
T ss_pred             CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHh-------------------------------------
Confidence            578999999999999755   4799999999998888876321                                     


Q ss_pred             CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418          242 LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       242 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~  320 (349)
                      ..+++|+.|++++|.++..+...+                +.+++|+.|++++|. +..+|.. ++.+++|++|++++|.
T Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~----------------~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           49 DKLTQLTKLSLSQNQIQSLPDGVF----------------DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQ  111 (177)
T ss_dssp             TTCTTCSEEECCSSCCCCCCTTTT----------------TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCcccccEEECCCCcceEeChhHc----------------cCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCc
Confidence            234667777788888776554333                457889999999987 7777764 6889999999999987


Q ss_pred             HHHHHhhhh-cccccccccceeeeccccc
Q 041418          321 PELRQKLRE-FEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       321 ~~~~~~l~~-~~~~i~~ip~i~~~~~~~~  348 (349)
                         +..+.. .+....++..+.+.+|.++
T Consensus       112 ---l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          112 ---LKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             ---CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ---ceEeCHHHhcCCcccCEEEecCCCee
Confidence               224444 3466777888888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.84  E-value=8.5e-09  Score=85.16  Aligned_cols=50  Identities=22%  Similarity=0.242  Sum_probs=40.6

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF  203 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i  203 (349)
                      +|..+.  ++|++|++++|.++.+++..|+++++|++|+|++|.++.+|..+
T Consensus        27 iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~   76 (174)
T 2r9u_A           27 VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV   76 (174)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH
Confidence            566554  78999999999999886655589999999999999888888753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.84  E-value=2.9e-09  Score=97.10  Aligned_cols=199  Identities=12%  Similarity=0.043  Sum_probs=122.4

Q ss_pred             CCCeeEEEeecCCCC--CCCcchHHh-hhccCccccCC-cccCC--------CCCCCEEeecCCCCcccchhHHhcCcCC
Q 041418          119 DSQLHSFLCCSPESR--HIDPIDWEK-ICGMFKLLRYP-SGIEN--------LFLLRYLKLNIPSLKSLSSSLLSNLLNL  186 (349)
Q Consensus       119 ~~~lr~l~~~~~~~~--~~~~~~~~~-~~~~l~~L~lp-~~i~~--------l~~L~~L~l~~~~l~~lp~~if~~l~~L  186 (349)
                      +++++.|.+.++...  ......++. .+..++...+| ..|.+        +++|+.+++.+ .++.+++..|..+++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            888999999998876  111111111 01111111244 45777        99999999999 8999999988999999


Q ss_pred             cEEeccCcCccccchh-hhccccchhhh------------------hCCCCCC-eeecc-----------CCCCCCCccE
Q 041418          187 YTLDMPFSYIDHTVDE-FWKMKKLRHLN------------------FGLSCLK-SLKLA-----------NESKMPWLSK  235 (349)
Q Consensus       187 ~~L~l~~~~l~~lp~~-i~~L~~L~~L~------------------~~l~~L~-~L~l~-----------~~~~~~~L~~  235 (349)
                      +.+++++|.+..+++. +....++..+.                  .++.+|+ .+.+.           ......++..
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            9999999988777654 45555554443                  1122222 11111           0012334444


Q ss_pred             EEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc---cc-cccc---ccccccc-eeeeeccCC
Q 041418          236 IVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---FW-TMGN---AAMPKLE-CLIINPCAY  297 (349)
Q Consensus       236 L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---~~-~~~~---~~~~~L~-~L~l~~c~~  297 (349)
                      +.+.+.          ..+++|+.++++.|+++..+...|..+++|+.+.   .. ..+.   ..+++|+ .+.+.+  .
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~  284 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--S  284 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--T
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--c
Confidence            554443          1367788888888777777767777777777776   10 0111   2455677 777776  4


Q ss_pred             CCCCCc-ccCCCCCCCEEEecCCC
Q 041418          298 LKKMPE-HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       298 l~~lp~-~l~~l~~L~~L~l~~~~  320 (349)
                      +..++. .+..+++|+.+++.++.
T Consensus       285 l~~I~~~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          285 VTAIEFGAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             CCEECTTTTTTCTTEEEEEECSSC
T ss_pred             ceEEchhhhhCCccCCEEEeCCCc
Confidence            677764 47778888888886655

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.83  E-value=6.8e-09  Score=85.75  Aligned_cols=115  Identities=13%  Similarity=0.067  Sum_probs=69.3

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc--------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR--------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~--------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      ..++++++.|.+.++.....+  .+.....+++.|.        + +.++.+++|++|++++|.++.+|+.+|+.+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            345778899998887765321  1122222444443        2 4566666777777777777666665556677777


Q ss_pred             EEeccCcCccccch--hhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC-------------CCCCCccEEEE
Q 041418          188 TLDMPFSYIDHTVD--EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY-------------LFPHSLTHLSF  252 (349)
Q Consensus       188 ~L~l~~~~l~~lp~--~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~-------------~~~~~L~~L~L  252 (349)
                      +|++++|.++.+|.  .++.                        +++|+.|++++|             ..+++|+.|++
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~------------------------l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLAS------------------------LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGG------------------------CTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             EEECCCCcCCcchhhHhhhc------------------------CCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence            77777776666665  3333                        334444444444             34678888888


Q ss_pred             eecCC
Q 041418          253 SNTDR  257 (349)
Q Consensus       253 ~~~~l  257 (349)
                      +.|..
T Consensus       148 ~~n~~  152 (176)
T 1a9n_A          148 QKVKL  152 (176)
T ss_dssp             EECCH
T ss_pred             CcCCH
Confidence            88764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.82  E-value=6.6e-10  Score=93.79  Aligned_cols=123  Identities=17%  Similarity=0.177  Sum_probs=82.8

Q ss_pred             CCCEEeecCC--CCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE
Q 041418          161 LLRYLKLNIP--SLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL  238 (349)
Q Consensus       161 ~L~~L~l~~~--~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l  238 (349)
                      .|+...+.++  .++.+|..+ +++++|++|++++|.++.+| .+.++++|++|+          ++++    .+..+. 
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~----------l~~n----~l~~l~-   86 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILS----------LGRN----LIKKIE-   86 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEE----------EEEE----EECSCS-
T ss_pred             chheeEeccccCcHhhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEE----------CCCC----Cccccc-
Confidence            3556666654  577788777 99999999999999888888 676655444442          2100    000000 


Q ss_pred             ccC-CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc--ccCCCCCCCEEE
Q 041418          239 AEY-LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE--HLWCIKSLNKFD  315 (349)
Q Consensus       239 ~~~-~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L~  315 (349)
                       .. ..+++|+.|++++|.+++.+  .+                +.+++|+.|++++|. +..+|.  .+..+++|++|+
T Consensus        87 -~~~~~~~~L~~L~L~~N~l~~l~--~~----------------~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A           87 -NLDAVADTLEELWISYNQIASLS--GI----------------EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             -SHHHHHHHCSEEEEEEEECCCHH--HH----------------HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEE
T ss_pred             -chhhcCCcCCEEECcCCcCCcCC--cc----------------ccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEE
Confidence             00 23467888888888876421  22                457788888888876 776654  578888899999


Q ss_pred             ecCCC
Q 041418          316 CWWPQ  320 (349)
Q Consensus       316 l~~~~  320 (349)
                      +++|+
T Consensus       147 l~~N~  151 (198)
T 1ds9_A          147 LAGNP  151 (198)
T ss_dssp             ECSCH
T ss_pred             ecCCc
Confidence            98887

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.76  E-value=2e-08  Score=82.53  Aligned_cols=50  Identities=20%  Similarity=0.236  Sum_probs=39.5

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF  203 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i  203 (349)
                      +|..+.  ++|++|++++|.++.+++..|+++++|++|++++|.++.+|+..
T Consensus        24 ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~   73 (170)
T 3g39_A           24 VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV   73 (170)
T ss_dssp             CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred             cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh
Confidence            555553  77889999999998886654588999999999999888887753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.66  E-value=5.3e-08  Score=89.24  Aligned_cols=34  Identities=26%  Similarity=0.249  Sum_probs=16.7

Q ss_pred             EeecCC-CCcccchhHHhcCcCCcEEeccC-cCccccc
Q 041418          165 LKLNIP-SLKSLSSSLLSNLLNLYTLDMPF-SYIDHTV  200 (349)
Q Consensus       165 L~l~~~-~l~~lp~~if~~l~~L~~L~l~~-~~l~~lp  200 (349)
                      ++.+++ .++.+|. + +.+++|++|+|++ |.++.+|
T Consensus        13 v~~~~~n~l~~ip~-l-~~~~~L~~L~l~~~n~l~~~~   48 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-L-PGAENLTELYIENQQHLQHLE   48 (347)
T ss_dssp             EECCSSCCCTTTTT-S-CSCSCCSEEECCSCSSCCEEC
T ss_pred             EEcCCCCCCCccCC-C-CCCCCeeEEEccCCCCCCCcC
Confidence            344444 4555554 3 5555555555553 4444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.49  E-value=2.4e-07  Score=84.83  Aligned_cols=61  Identities=21%  Similarity=0.141  Sum_probs=49.8

Q ss_pred             CCcccCCCCCCCEEeecC-CCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh
Q 041418          152 YPSGIENLFLLRYLKLNI-PSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN  213 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~-~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~  213 (349)
                      +|. +..+++|++|+|++ |.++.+|+..|+++++|++|+|++|.++.+|+ .+++|++|++|+
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            788 99999999999996 99999987666999999999999998888866 456555444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.43  E-value=1.7e-08  Score=93.78  Aligned_cols=78  Identities=17%  Similarity=0.121  Sum_probs=41.3

Q ss_pred             CCCccEEEEccC--------------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeecc
Q 041418          230 MPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPC  295 (349)
Q Consensus       230 ~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c  295 (349)
                      .++|+.|++++|              ...++|++|+|++|.+.......+.            ......++|+.|++++|
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~------------~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA------------AQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH------------HHGGGCSCCCEEECCSS
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH------------HHHhcCCCcCeEECCCC
Confidence            455666666666              3466788888888876543211110            00022345666666666


Q ss_pred             CCCCC-----CCcccCCCCCCCEEEecCCC
Q 041418          296 AYLKK-----MPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       296 ~~l~~-----lp~~l~~l~~L~~L~l~~~~  320 (349)
                      . ++.     ++..+...++|++|++++|+
T Consensus       222 ~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          222 G-AGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             C-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             C-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            5 332     22233345666666666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.42  E-value=2.2e-06  Score=80.16  Aligned_cols=158  Identities=11%  Similarity=0.122  Sum_probs=83.1

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCC-CCCCeeeccCCCCCCC
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGL-SCLKSLKLANESKMPW  232 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l-~~L~~L~l~~~~~~~~  232 (349)
                      +|.++++|+.+++++|.++.+|...|. ..+|+.+.+..+ ++.++. .+.++++|+.+.  + .+++.+.-. .....+
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~--l~~~l~~I~~~-aF~~~~  249 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE--IPENVSTIGQE-AFRESG  249 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE--CCTTCCEECTT-TTTTCC
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe--cCCCccCcccc-ccccCC
Confidence            355566666666666666666666544 456666666533 444433 234444444443  0 011111100 011146


Q ss_pred             ccEEEEccC---------CCCCCccEEEEeecCCC-----CCCcccccCCccccccc---cc-cccc---ccccccceee
Q 041418          233 LSKIVLAEY---------LFPHSLTHLSFSNTDRM-----DDPMPVLETLPLLQKAD---FW-TMGN---AAMPKLECLI  291 (349)
Q Consensus       233 L~~L~l~~~---------~~~~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~---~~-~~~~---~~~~~L~~L~  291 (349)
                      |+.+.+..+         ..+++|+.+.+.++...     ..+...|..+++|+.+.   .. ....   ..+++|+.+.
T Consensus       250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLT  329 (401)
T ss_dssp             CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEE
T ss_pred             ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEE
Confidence            666666443         56777888888776654     23334566667776665   00 0111   2345677777


Q ss_pred             eeccCCCCCCCc-ccCCCCCCCEEEecCCC
Q 041418          292 INPCAYLKKMPE-HLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       292 l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~  320 (349)
                      +.+  ++..++. .+..+ +|+.+.+.++.
T Consensus       330 lp~--~l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          330 IPA--NVTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             ECT--TCCEECTTSSSSS-CCCEEEECCSS
T ss_pred             ECc--cccEEcHHhCCCC-CCCEEEEcCCC
Confidence            754  2566654 35666 77777776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=1.3e-06  Score=79.39  Aligned_cols=158  Identities=10%  Similarity=-0.036  Sum_probs=88.6

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC----ccccc-hhhhccccch------------------
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY----IDHTV-DEFWKMKKLR------------------  210 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~----l~~lp-~~i~~L~~L~------------------  210 (349)
                      .+|.++++|+.+++++|.+..+++..|..+.++.++....+.    ...+. ..+..+.+|+                  
T Consensus       118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~  197 (329)
T 3sb4_A          118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA  197 (329)
T ss_dssp             TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred             HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence            458889999999999999999998888888888877765521    11110 0111122222                  


Q ss_pred             --------hhh--------------hCCCCCCeeeccCCCCCCCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCC
Q 041418          211 --------HLN--------------FGLSCLKSLKLANESKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETL  268 (349)
Q Consensus       211 --------~L~--------------~~l~~L~~L~l~~~~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l  268 (349)
                              .+.              ..+++|+.+++.++    +++.+.-.-...+.+|+.+++..| +...+...|..+
T Consensus       198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n----~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~  272 (329)
T 3sb4_A          198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT----NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNC  272 (329)
T ss_dssp             TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB----CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC----CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCC
Confidence                    111              23788888888511    233322111133444444444443 333333444555


Q ss_pred             cccc-ccc------ccc-cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEe
Q 041418          269 PLLQ-KAD------FWT-MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDC  316 (349)
Q Consensus       269 ~~L~-~L~------~~~-~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  316 (349)
                      ++|+ .+.      .+. .....+++|+.+++.++..-.--+..+.++++|+.++.
T Consensus       273 ~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          273 GRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             hhccEEEEEcccceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            5554 433      000 11256677777777666555555566778888888763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.20  E-value=8.6e-07  Score=81.78  Aligned_cols=177  Identities=17%  Similarity=0.111  Sum_probs=91.4

Q ss_pred             CCCCCCeeEEEeecCCCCC-CCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCC----------cccchhHHhcCc
Q 041418          116 DDYDSQLHSFLCCSPESRH-IDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSL----------KSLSSSLLSNLL  184 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~-~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l----------~~lp~~if~~l~  184 (349)
                      ..+..+++.|++-...... ........         +..++..+++|+.|.+.+...          ..++.-+ ..++
T Consensus       103 ~~~~~~v~~L~lg~~~~~~~~~~~~~~~---------L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll-~~~P  172 (362)
T 2ra8_A          103 DKKLPSLKQITIGXWGYEGEDCSDIADG---------IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL-DAMP  172 (362)
T ss_dssp             CTTGGGCSEEEECCCCSSSCCSHHHHHH---------HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH-HTCT
T ss_pred             CCCchhcceEEEcccccCCCcHHHHHHH---------HHHhhhhcchhhheeecCcchhhcccccccccCHHHHH-hcCC
Confidence            4455677788776544320 00011111         234455667788887765422          1244444 7888


Q ss_pred             CCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCC------------CCCCCccEEEEcc-------C----
Q 041418          185 NLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANE------------SKMPWLSKIVLAE-------Y----  241 (349)
Q Consensus       185 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~------------~~~~~L~~L~l~~-------~----  241 (349)
                      +|+.|++++|.-..+|. + .+++|++|.          +...            ..+|+|+.|+|+.       .    
T Consensus       173 ~L~~L~L~g~~~l~l~~-~-~~~~L~~L~----------L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          173 LLNNLKIKGTNNLSIGK-K-PRPNLKSLE----------IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             TCCEEEEECCBTCBCCS-C-BCTTCSEEE----------EECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             CCcEEEEeCCCCceecc-c-cCCCCcEEE----------EecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            99999998872123443 2 234343332          2100            1233333333320       0    


Q ss_pred             --------CCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCC-----CCcccCCC
Q 041418          242 --------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKK-----MPEHLWCI  308 (349)
Q Consensus       242 --------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~-----lp~~l~~l  308 (349)
                              ..+++|+.|++.+|.+.......+             ...+.+++|+.|+++.|. ++.     ++.++..+
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l-------------a~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l  306 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF-------------LESDILPQLETMDISAGV-LTDEGARLLLDHVDKI  306 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH-------------HHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHH
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH-------------HhCccCCCCCEEECCCCC-CChHHHHHHHhhcccC
Confidence                    124555666665555432111111             111357899999998765 544     44445668


Q ss_pred             CCCCEEEecCCC--HHHHHhhh
Q 041418          309 KSLNKFDCWWPQ--PELRQKLR  328 (349)
Q Consensus       309 ~~L~~L~l~~~~--~~~~~~l~  328 (349)
                      ++|+.|++++|.  ++..+.+.
T Consensus       307 ~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          307 KHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             TTCSEEECCSBBCCHHHHHHHH
T ss_pred             CcceEEECCCCcCCHHHHHHHH
Confidence            899999998886  33444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.20  E-value=1.1e-05  Score=75.34  Aligned_cols=156  Identities=8%  Similarity=0.012  Sum_probs=98.7

Q ss_pred             CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEE
Q 041418          159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVL  238 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l  238 (349)
                      ..+|+.+.+..+ ++.++...|.++.+|+.+++..+ ++.++.....-.+|+.+.- -.+++.+.-..=..|++|+.+.+
T Consensus       202 ~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l  278 (401)
T 4fdw_A          202 YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTT  278 (401)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred             ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence            589999999854 88999988899999999999875 5666554322245555430 00111111000045666776666


Q ss_pred             ccC---------------CCCCCccEEEEeecCCCCCCcccccCCccccccc---cc-cccc---ccccccceeeeeccC
Q 041418          239 AEY---------------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---FW-TMGN---AAMPKLECLIINPCA  296 (349)
Q Consensus       239 ~~~---------------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---~~-~~~~---~~~~~L~~L~l~~c~  296 (349)
                      .++               ..+++|+.+.+. +++.......|..+++|+.+.   .. ..+.   ..+ +|+.+.+.++.
T Consensus       279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSS
T ss_pred             CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCC
Confidence            443               557788888887 446555566777888887776   10 0111   234 79999999876


Q ss_pred             CCCCCCc-ccCCCC-CCCEEEecCCC
Q 041418          297 YLKKMPE-HLWCIK-SLNKFDCWWPQ  320 (349)
Q Consensus       297 ~l~~lp~-~l~~l~-~L~~L~l~~~~  320 (349)
                       ...++. .+..++ +++.|.+-...
T Consensus       357 -~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          357 -PPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             -CCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             -CcccccccccCCCCCccEEEeCHHH
Confidence             555654 355564 78889885544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.14  E-value=1.6e-06  Score=79.96  Aligned_cols=67  Identities=18%  Similarity=0.057  Sum_probs=41.8

Q ss_pred             ccccccceeeeeccCCCCCCCcc---cCCCCCCCEEEecCCC--HHHHHhhhhcccccccccceeeeccccc
Q 041418          282 AAMPKLECLIINPCAYLKKMPEH---LWCIKSLNKFDCWWPQ--PELRQKLREFEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       282 ~~~~~L~~L~l~~c~~l~~lp~~---l~~l~~L~~L~l~~~~--~~~~~~l~~~~~~i~~ip~i~~~~~~~~  348 (349)
                      +.+|+|+.|.+.+|......+..   ...+++|+.|+++.|.  ..-...+........++..+.++.|.++
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            35899999999988743222211   1357899999998876  1111222222245667777777777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=9.6e-06  Score=66.45  Aligned_cols=36  Identities=11%  Similarity=-0.008  Sum_probs=29.1

Q ss_pred             cccceeeeeccCCCCCCC-cccCCCCCCCEEEecCCC
Q 041418          285 PKLECLIINPCAYLKKMP-EHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       285 ~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~  320 (349)
                      ++|+.|++++|.+++.-- ..+..+++|+.|++++|+
T Consensus       114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            579999999998776421 126678999999999998

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.78  E-value=4.5e-06  Score=77.32  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=48.7

Q ss_pred             CCCCEEeecCCCCccc-chhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCC----------
Q 041418          160 FLLRYLKLNIPSLKSL-SSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANE----------  227 (349)
Q Consensus       160 ~~L~~L~l~~~~l~~l-p~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~----------  227 (349)
                      ++|+.|+|++|.++.. ...++..+.+|++|+|++|.++.... .+...     |....++|++|+++++          
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~-----L~~~~~~L~~L~Ls~n~l~~~~~~~l  175 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-----LLHDQCQITTLRLSNNPLTAAGVAVL  175 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH-----HHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH-----HHhcCCccceeeCCCCCCChHHHHHH
Confidence            4566666666665421 11221344566666666665543211 11100     0012234444444411          


Q ss_pred             ----CCCCCccEEEEccC--------------CCCCCccEEEEeecCCCCC
Q 041418          228 ----SKMPWLSKIVLAEY--------------LFPHSLTHLSFSNTDRMDD  260 (349)
Q Consensus       228 ----~~~~~L~~L~l~~~--------------~~~~~L~~L~L~~~~l~~~  260 (349)
                          ..+++|+.|++++|              ...++|+.|+|++|.++..
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence                33556777777766              3456788888888877643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.57  E-value=0.0009  Score=62.05  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCc
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS  194 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~  194 (349)
                      +|.++++|+.+.+.++ +..++...|.++.+|+.+.+..+
T Consensus       157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC
Confidence            3455556666666443 34455555556666666655443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.48  E-value=0.00013  Score=59.65  Aligned_cols=46  Identities=13%  Similarity=0.287  Sum_probs=31.3

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccc-hhHHhcCcCCcEEeccCc-Cccc
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLS-SSLLSNLLNLYTLDMPFS-YIDH  198 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp-~~if~~l~~L~~L~l~~~-~l~~  198 (349)
                      +|.....-.+|+.||+++|.++... ..+ ..+++|++|+|++| .++.
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD  100 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIED  100 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCH
Confidence            4443323346889999998877432 334 78889999999988 5654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.31  E-value=0.00023  Score=62.43  Aligned_cols=48  Identities=27%  Similarity=0.209  Sum_probs=36.8

Q ss_pred             CCCCCCCEEeecCCCCcccc---hhHHhcCcCCcEEeccCcCccccchhhhcc
Q 041418          157 ENLFLLRYLKLNIPSLKSLS---SSLLSNLLNLYTLDMPFSYIDHTVDEFWKM  206 (349)
Q Consensus       157 ~~l~~L~~L~l~~~~l~~lp---~~if~~l~~L~~L~l~~~~l~~lp~~i~~L  206 (349)
                      .++++|+.|+|++|.++.++   ..+ +.+++|++|+|++|.++.+. .+..+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~-~l~~l  217 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSER-ELDKI  217 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGG-GGGGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCch-hhhhc
Confidence            45788999999999888655   444 88999999999999888763 24443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.10  E-value=0.016  Score=53.50  Aligned_cols=112  Identities=16%  Similarity=0.201  Sum_probs=59.8

Q ss_pred             CCCCCccEEEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc---cc-cccc---ccccccceee
Q 041418          228 SKMPWLSKIVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD---FW-TMGN---AAMPKLECLI  291 (349)
Q Consensus       228 ~~~~~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~---~~-~~~~---~~~~~L~~L~  291 (349)
                      ..+..|+.+.+...         ..+.+|+.+.+. +.+...+...|..+.+|+.+.   .. ....   ..+.+|+.+.
T Consensus       262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             eecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEE
Confidence            44566666665433         456667777764 334444445677777777765   10 0111   2356788888


Q ss_pred             eeccCCCCCCCc-ccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecccc
Q 041418          292 INPCAYLKKMPE-HLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       292 l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~~  347 (349)
                      +.+  .+..++. .+.++++|+.+++.+....+     ..+..-..+..+.+..+..
T Consensus       341 ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~-----~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          341 IPS--SVTKIPESAFSNCTALNNIEYSGSRSQW-----NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ECT--TCCBCCGGGGTTCTTCCEEEESSCHHHH-----HTCBCCCCC----------
T ss_pred             ECc--ccCEEhHhHhhCCCCCCEEEECCceeeh-----hhhhccCCCCEEEeCCCCE
Confidence            854  3677765 47888999999998765322     1223334455555554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.04  E-value=0.00066  Score=56.04  Aligned_cols=16  Identities=13%  Similarity=0.125  Sum_probs=11.0

Q ss_pred             CCCCccEEEEeecCCC
Q 041418          243 FPHSLTHLSFSNTDRM  258 (349)
Q Consensus       243 ~~~~L~~L~L~~~~l~  258 (349)
                      ..++|+.|++++|.+.
T Consensus       149 ~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          149 KNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HCSSCCEEECCCSSHH
T ss_pred             hCCCcCEEeccCCCCC
Confidence            3467788888777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.97  E-value=0.0082  Score=55.49  Aligned_cols=165  Identities=12%  Similarity=0.100  Sum_probs=81.6

Q ss_pred             ccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh-------------hCCCCCCeeeccCC--------CCCC
Q 041418          174 SLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN-------------FGLSCLKSLKLANE--------SKMP  231 (349)
Q Consensus       174 ~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~-------------~~l~~L~~L~l~~~--------~~~~  231 (349)
                      .++...|.++.+|+.+.+.++ +..++. .+..+.+|+.+.             .++..|+.+.+.+.        ....
T Consensus       152 ~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~  230 (394)
T 4fs7_A          152 VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT  230 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred             ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence            344555678888888888654 334443 355666666654             34455555544311        2334


Q ss_pred             CccEEEEccC---------CCCCCccEEEEeecCCCC--------------------CCcccccCCccccccc---cc-c
Q 041418          232 WLSKIVLAEY---------LFPHSLTHLSFSNTDRMD--------------------DPMPVLETLPLLQKAD---FW-T  278 (349)
Q Consensus       232 ~L~~L~l~~~---------~~~~~L~~L~L~~~~l~~--------------------~~~~~l~~l~~L~~L~---~~-~  278 (349)
                      .|+.+.+...         ....+|+.+.+..+...-                    .+...+..+.+|+.+.   .. .
T Consensus       231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~i~~  310 (394)
T 4fs7_A          231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDSVKF  310 (394)
T ss_dssp             CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTTCCE
T ss_pred             CCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccccce
Confidence            5555554432         344555555554432110                    0111233334444333   00 0


Q ss_pred             ccc---ccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecc
Q 041418          279 MGN---AAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGE  345 (349)
Q Consensus       279 ~~~---~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~  345 (349)
                      .+.   ..+.+|+.+.+.+  .+..++. .+..+++|+.+.+...    +..+.. .|.....+..|.+..+
T Consensus       311 I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~----l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          311 IGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS----LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT----CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             echhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc----ccEehHHHhhCCCCCCEEEECCC
Confidence            111   2345677777753  2566654 4667788888877432    223333 4555555555555433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.96  E-value=0.00067  Score=59.46  Aligned_cols=60  Identities=23%  Similarity=0.115  Sum_probs=43.1

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCc--CCcEEeccCcCcc-ccch-------hhhccccchhhh
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLL--NLYTLDMPFSYID-HTVD-------EFWKMKKLRHLN  213 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~--~L~~L~l~~~~l~-~lp~-------~i~~L~~L~~L~  213 (349)
                      +|..++.+++|++|+|++|.++.+. .+ ..+.  +|++|++++|.+. .+|.       .+..+++|+.|+
T Consensus       188 l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          188 MSSIVQKAPNLKILNLSGNELKSER-EL-DKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GTTHHHHSTTCCEEECTTSCCCSGG-GG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             chhHHhhCCCCCEEECCCCccCCch-hh-hhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            4455678999999999999999873 34 5555  9999999999664 3442       245555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.04  E-value=0.0045  Score=47.87  Aligned_cols=36  Identities=25%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             CCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCc
Q 041418          161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYI  196 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l  196 (349)
                      +|++|+|++|.|+.+|..+|..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            588999999999999888878899999999988843

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.98  E-value=0.05  Score=49.68  Aligned_cols=32  Identities=9%  Similarity=0.160  Sum_probs=16.4

Q ss_pred             ccccceeeeeccCCCCCCCc-ccCCCCCCCEEEe
Q 041418          284 MPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDC  316 (349)
Q Consensus       284 ~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l  316 (349)
                      +++|+.+.+.++. +..++. .+.++++|+.+.+
T Consensus       285 c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          285 CSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             CTTCCEEEECCTT-CCEECTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccc-cceehhhhhcCCCCCCEEEc
Confidence            3455555555433 444443 2455556666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.86  E-value=0.0026  Score=52.39  Aligned_cols=101  Identities=13%  Similarity=0.088  Sum_probs=64.9

Q ss_pred             CCCCeeEEEeecC-CCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcc-----cchhHHhcCcCCcEEec
Q 041418          118 YDSQLHSFLCCSP-ESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKS-----LSSSLLSNLLNLYTLDM  191 (349)
Q Consensus       118 ~~~~lr~l~~~~~-~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~-----lp~~if~~l~~L~~L~l  191 (349)
                      ..+.++.|.+.++ ...   ......         +...+...++|++|+|++|.+..     +...+ ...++|++|+|
T Consensus        34 ~~~~L~~L~L~~n~~i~---~~g~~~---------l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L  100 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIP---VPTLKA---------CAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNV  100 (185)
T ss_dssp             TCTTCCEEECTTCTTCC---HHHHHH---------HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEEC
T ss_pred             cCCCCCEEEecCCCCCC---HHHHHH---------HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEEC
Confidence            3568899998876 553   111111         22345566788999999998863     44445 67788999999


Q ss_pred             cCcCcccc-----chhhhccccchhhhhCCCCCCeeec--cCC--------------CCCCCccEEEEccC
Q 041418          192 PFSYIDHT-----VDEFWKMKKLRHLNFGLSCLKSLKL--ANE--------------SKMPWLSKIVLAEY  241 (349)
Q Consensus       192 ~~~~l~~l-----p~~i~~L~~L~~L~~~l~~L~~L~l--~~~--------------~~~~~L~~L~l~~~  241 (349)
                      ++|.++.-     ...+.          ..++|++|++  .++              ...++|++|++++|
T Consensus       101 ~~N~i~~~g~~~l~~~L~----------~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          101 ESNFISGSGILALVEALQ----------SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CSSCCCHHHHHHHHHGGG----------GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             cCCcCCHHHHHHHHHHHH----------hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            99977652     22222          3456777777  411              44578888888776

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.39  E-value=0.016  Score=44.66  Aligned_cols=38  Identities=11%  Similarity=0.086  Sum_probs=32.0

Q ss_pred             CEEeecCCCCc--ccchhHHhcCcCCcEEeccCcCccccchhh
Q 041418          163 RYLKLNIPSLK--SLSSSLLSNLLNLYTLDMPFSYIDHTVDEF  203 (349)
Q Consensus       163 ~~L~l~~~~l~--~lp~~if~~l~~L~~L~l~~~~l~~lp~~i  203 (349)
                      ..++.+++.++  .+|..+   ..+|++|+|++|.++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~   50 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGL   50 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTT
T ss_pred             CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhh
Confidence            47888999998  999755   457999999999999998754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.24  E-value=0.087  Score=48.49  Aligned_cols=45  Identities=13%  Similarity=0.165  Sum_probs=22.9

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD  201 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~  201 (349)
                      +|.++..|+.+.+..+ +..++...|.++.+|+.+.+.. .+..++.
T Consensus       260 aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~  304 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPE  304 (394)
T ss_dssp             TTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECT
T ss_pred             eeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCc
Confidence            3455556666665443 3344444455566666665532 3444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.96  E-value=0.66  Score=42.07  Aligned_cols=57  Identities=25%  Similarity=0.209  Sum_probs=40.3

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhh
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHL  212 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L  212 (349)
                      ++.++..|+.+.+.. .++.++...|..+.+|+.+.+.++.++.++.. +.++.+|+.+
T Consensus       258 aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          258 LLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             TTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             ccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            456677888888865 47778887778888999998887777777653 4444444333

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.87  E-value=1.6  Score=35.92  Aligned_cols=39  Identities=13%  Similarity=0.100  Sum_probs=22.2

Q ss_pred             CCCCCCEEeecCC-CCcc-----cchhHHhcCcCCcEEeccCcCcc
Q 041418          158 NLFLLRYLKLNIP-SLKS-----LSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       158 ~l~~L~~L~l~~~-~l~~-----lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      +-+.|+.|+|+++ .|..     +-+.+ ..-+.|+.|+|++|.++
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCB
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCC
Confidence            3455667777664 5531     33333 55566777777777555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	349
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.65
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.62
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.58
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.57
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.53
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.51
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.35
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.31
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.24
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.22
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.2
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.19
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.13
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.93
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.91
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.69
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.41
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.34
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.17
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.15
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.02
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.1

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.3e-16  Score=139.77  Aligned_cols=164  Identities=17%  Similarity=0.110  Sum_probs=109.9

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMP  231 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~  231 (349)
                      +|+.+.  +++++|+|++|.++.+|...|.++++|++|++++|.++.+|. ++.+++|++|+-.-.+++...- .-..++
T Consensus        25 iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~  100 (266)
T d1p9ag_          25 LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPL-LGQTLP  100 (266)
T ss_dssp             CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCC-CTTTCT
T ss_pred             eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccccccccc-cccccc
Confidence            555443  467788888888887776655778888888888887777764 4555555555400001110000 003456


Q ss_pred             CccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccceeeee
Q 041418          232 WLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLECLIIN  293 (349)
Q Consensus       232 ~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~~L~l~  293 (349)
                      +|+.|+++++          ..+.+++.|++++|.+...+...+..+++|+.++       .+.. ..+.+++|+.|+++
T Consensus       101 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecc
Confidence            6666666655          4566777777777777766666666677777666       1111 12568899999999


Q ss_pred             ccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          294 PCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       294 ~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      +|. ++.+|.++..+++|+.|+++++|
T Consensus       181 ~N~-L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         181 ENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cCC-CcccChhHCCCCCCCEEEecCCC
Confidence            987 88999999999999999999977

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.8e-16  Score=141.43  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=46.1

Q ss_pred             CCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc
Q 041418          119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH  198 (349)
Q Consensus       119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~  198 (349)
                      +.++++|.+.+.....                 + ++++.+++|++|++++|+++.+|+ + +++++|++|++++|.+..
T Consensus        43 l~~l~~L~l~~~~I~~-----------------l-~gl~~L~nL~~L~Ls~N~l~~l~~-l-~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          43 LDQVTTLQADRLGIKS-----------------I-DGVEYLNNLTQINFSNNQLTDITP-L-KNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             HTTCCEEECCSSCCCC-----------------C-TTGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCC
T ss_pred             hCCCCEEECCCCCCCC-----------------c-cccccCCCCCEEeCcCCcCCCCcc-c-cCCccccccccccccccc
Confidence            4568888887765542                 1 235556666666666666666654 3 666666666666666666


Q ss_pred             cchhhhccccchhhh
Q 041418          199 TVDEFWKMKKLRHLN  213 (349)
Q Consensus       199 lp~~i~~L~~L~~L~  213 (349)
                      +++ ++++++|+.|+
T Consensus       103 i~~-l~~l~~L~~L~  116 (384)
T d2omza2         103 ITP-LANLTNLTGLT  116 (384)
T ss_dssp             CGG-GTTCTTCCEEE
T ss_pred             ccc-ccccccccccc
Confidence            653 56666666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=6.1e-16  Score=137.89  Aligned_cols=190  Identities=21%  Similarity=0.176  Sum_probs=131.1

Q ss_pred             CCc-ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh--------------hCC
Q 041418          152 YPS-GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN--------------FGL  216 (349)
Q Consensus       152 lp~-~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~--------------~~l  216 (349)
                      +|+ +|.++++|++|++++|.+..+++..|.++++|++|++++|.++.+|..+.  ..++.|.              ...
T Consensus        46 l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~--~~l~~L~~~~n~l~~l~~~~~~~~  123 (305)
T d1xkua_          46 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGL  123 (305)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTC
T ss_pred             cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchh--hhhhhhhccccchhhhhhhhhhcc
Confidence            554 68888899999999988888866545888999999999988888876542  2333332              223


Q ss_pred             CCCCeeeccCC------------CCCCCccEEEEccC-------CCCCCccEEEEeecCCCCCCcccccCCccccccc--
Q 041418          217 SCLKSLKLANE------------SKMPWLSKIVLAEY-------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--  275 (349)
Q Consensus       217 ~~L~~L~l~~~------------~~~~~L~~L~l~~~-------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--  275 (349)
                      ..+..+.....            ..+++|+.+++.++       ..+++|+.|++++|.........+..++.++.|.  
T Consensus       124 ~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s  203 (305)
T d1xkua_         124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  203 (305)
T ss_dssp             TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             ccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccc
Confidence            33444443310            45677888888776       4577888999998888777777888888888776  


Q ss_pred             -----cc-ccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-------cccccccccceee
Q 041418          276 -----FW-TMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-------FEDKEQQIPNRQS  342 (349)
Q Consensus       276 -----~~-~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-------~~~~i~~ip~i~~  342 (349)
                           .. ......+++|++|++++|+ +..+|.++..+++|++|++++|.   +..+..       ......++..+.+
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~lp~~l~~l~~L~~L~Ls~N~---i~~i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN---ISAIGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC---CCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             cccccccccccccccccceeeeccccc-ccccccccccccCCCEEECCCCc---cCccChhhccCcchhcccCCCCEEEC
Confidence                 11 1112456889999999985 88898889999999999999887   233322       1223344555666


Q ss_pred             ecccc
Q 041418          343 TGEMM  347 (349)
Q Consensus       343 ~~~~~  347 (349)
                      ++|.+
T Consensus       280 ~~N~~  284 (305)
T d1xkua_         280 FSNPV  284 (305)
T ss_dssp             CSSSS
T ss_pred             CCCcC
Confidence            66654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.62  E-value=3.1e-16  Score=140.45  Aligned_cols=208  Identities=15%  Similarity=0.145  Sum_probs=139.8

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecC-CCCc-ccchhHHhcCcCCcEEeccCcCcc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNI-PSLK-SLSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~-~~l~-~lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      .+++.|.+.++.....              ..+|+++++|++|++|++++ |.++ .+|+++ +++++|++|++++|.+.
T Consensus        50 ~~v~~L~L~~~~l~g~--------------~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~  114 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKP--------------YPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVS  114 (313)
T ss_dssp             CCEEEEEEECCCCSSC--------------EECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCE
T ss_pred             EEEEEEECCCCCCCCC--------------CCCChHHhcCcccccccccccccccccccccc-ccccccchhhhcccccc
Confidence            4688888887655320              01677888888888888876 6666 788887 88888888888888666


Q ss_pred             cc-chhhhccccchhhh--------------hCCCCCCeeeccCC----------CCCCCc-cEEEEccC----------
Q 041418          198 HT-VDEFWKMKKLRHLN--------------FGLSCLKSLKLANE----------SKMPWL-SKIVLAEY----------  241 (349)
Q Consensus       198 ~l-p~~i~~L~~L~~L~--------------~~l~~L~~L~l~~~----------~~~~~L-~~L~l~~~----------  241 (349)
                      .+ |..+..+.+|++++              +.+++|+.++++++          ..+..+ +.+.++++          
T Consensus       115 ~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             ccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            55 44467777777766              45566666666521          223333 55555554          


Q ss_pred             CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcccCCCCCCCEE
Q 041418          242 LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKF  314 (349)
Q Consensus       242 ~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L  314 (349)
                      ..+ ....+++..+...+..+..++.+++++.+.       ..+...+.+++|+.|++++|+..+.+|.+++++++|++|
T Consensus       195 ~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L  273 (313)
T d1ogqa_         195 ANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL  273 (313)
T ss_dssp             GGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred             ccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEE
Confidence            112 233566666666666666667777777776       222334567899999999998666999999999999999


Q ss_pred             EecCCCHHHHHhhhhcccccccccceeeeccc
Q 041418          315 DCWWPQPELRQKLREFEDKEQQIPNRQSTGEM  346 (349)
Q Consensus       315 ~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~  346 (349)
                      ++++|.  +...+ +++.+++++..+.+.+|.
T Consensus       274 ~Ls~N~--l~g~i-P~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         274 NVSFNN--LCGEI-PQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             ECCSSE--EEEEC-CCSTTGGGSCGGGTCSSS
T ss_pred             ECcCCc--ccccC-CCcccCCCCCHHHhCCCc
Confidence            999986  11122 245566777777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.7e-15  Score=131.52  Aligned_cols=166  Identities=18%  Similarity=0.141  Sum_probs=118.6

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhh-hccccchhhh---------------hC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEF-WKMKKLRHLN---------------FG  215 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~---------------~~  215 (349)
                      +|..+.  +.+++|+|++|+|+++|...|.++++|++|++++|.+..++... ..+..++++.               ++
T Consensus        26 iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~  103 (284)
T d1ozna_          26 VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG  103 (284)
T ss_dssp             CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred             cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            444433  45677888888888777665577888888888777777665443 4444444443               45


Q ss_pred             CCCCCeeeccCC----------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc
Q 041418          216 LSCLKSLKLANE----------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD  275 (349)
Q Consensus       216 l~~L~~L~l~~~----------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~  275 (349)
                      +++|+.|++.+.          ..+++|+.+++.++          ...++|+.|++++|++...+...+..+++|+.+.
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            677777777611          45678888888887          4567889999999998877777888888888887


Q ss_pred             -------cc-ccccccccccceeeeeccCCCCCCC-cccCCCCCCCEEEecCCC
Q 041418          276 -------FW-TMGNAAMPKLECLIINPCAYLKKMP-EHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       276 -------~~-~~~~~~~~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~  320 (349)
                             .. +...+.+++|+.|++++|. +..+| ..++.+++|++|+++++|
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhccccccChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCCC
Confidence                   11 1223567889999999987 56665 468889999999998865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.57  E-value=2.3e-15  Score=134.60  Aligned_cols=188  Identities=14%  Similarity=0.080  Sum_probs=114.4

Q ss_pred             CCCCCCCeeEEEeec-CCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccC
Q 041418          115 EDDYDSQLHSFLCCS-PESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPF  193 (349)
Q Consensus       115 ~~~~~~~lr~l~~~~-~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~  193 (349)
                      ...++++++.|.+.+ +...+    .            +|.+|++|++|++|++++|++..++...|..+.+|+++++++
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g----~------------iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~  134 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVG----P------------IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEES----C------------CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             HHhcCcccccccccccccccc----c------------cccccccccccchhhhccccccccccccccchhhhccccccc
Confidence            356788999999875 33321    0            556666666666666666666654444336666666666666


Q ss_pred             c-Cccccchhhhccccchhhh--------------hCCCCC-CeeeccCC---------CCCCCccEEEEccC-------
Q 041418          194 S-YIDHTVDEFWKMKKLRHLN--------------FGLSCL-KSLKLANE---------SKMPWLSKIVLAEY-------  241 (349)
Q Consensus       194 ~-~l~~lp~~i~~L~~L~~L~--------------~~l~~L-~~L~l~~~---------~~~~~L~~L~l~~~-------  241 (349)
                      | ....+|..++++++|++++              ..+.++ +.+.+.++         ........+++..+       
T Consensus       135 N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~  214 (313)
T d1ogqa_         135 NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCG
T ss_pred             ccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6 4445566666666666655              222232 33433311         01112223444443       


Q ss_pred             ---CCCCCccEEEEeecCCCCCCcccccCCccccccc--------ccccccccccccceeeeeccCCCCCCCcccCCCCC
Q 041418          242 ---LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD--------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKS  310 (349)
Q Consensus       242 ---~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~--------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~  310 (349)
                         ..+++++.+++++|.+...+ +.++.+++|+.|+        .++...+.+++|++|++++|...+.+|. ++++++
T Consensus       215 ~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~  292 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQR  292 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGG
T ss_pred             ccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCC
Confidence               45566677777776665433 4566666666665        2233346788999999999885558886 788899


Q ss_pred             CCEEEecCCC
Q 041418          311 LNKFDCWWPQ  320 (349)
Q Consensus       311 L~~L~l~~~~  320 (349)
                      |+.+++++|+
T Consensus       293 L~~l~l~~N~  302 (313)
T d1ogqa_         293 FDVSAYANNK  302 (313)
T ss_dssp             SCGGGTCSSS
T ss_pred             CCHHHhCCCc
Confidence            9999998886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.57  E-value=2e-14  Score=127.90  Aligned_cols=193  Identities=15%  Similarity=0.097  Sum_probs=148.8

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLY  187 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~  187 (349)
                      +.++.|.+.++....++    +..|.++..|+            .|..|.++++|++|++++|+++.+|...   ...++
T Consensus        31 ~~l~~L~Ls~N~i~~l~----~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~---~~~l~  103 (305)
T d1xkua_          31 PDTALLDLQNNKITEIK----DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQ  103 (305)
T ss_dssp             TTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC---CTTCC
T ss_pred             CCCCEEECcCCcCCCcC----hhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch---hhhhh
Confidence            67999999988775432    22344444444            4678999999999999999999999754   46889


Q ss_pred             EEeccCcCccccchhh-hccccchhhh----------------hCCCCCCeeeccCC-------CCCCCccEEEEccC--
Q 041418          188 TLDMPFSYIDHTVDEF-WKMKKLRHLN----------------FGLSCLKSLKLANE-------SKMPWLSKIVLAEY--  241 (349)
Q Consensus       188 ~L~l~~~~l~~lp~~i-~~L~~L~~L~----------------~~l~~L~~L~l~~~-------~~~~~L~~L~l~~~--  241 (349)
                      .|++.+|.+..++... .....++.+.                ..+++|+.+.+.+.       ..+++|+.|+++++  
T Consensus       104 ~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI  183 (305)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCC
T ss_pred             hhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcC
Confidence            9999999888887653 3344444443                45677888887622       45788999999887  


Q ss_pred             --------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccccccccccccceeeeeccCCCCCCCcc--
Q 041418          242 --------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTMGNAAMPKLECLIINPCAYLKKMPEH--  304 (349)
Q Consensus       242 --------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~--  304 (349)
                              ..++.++.|++++|.+...+...+..+++|++|+       .++.....+++|+.|++++|+ ++.++..  
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f  262 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF  262 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSS
T ss_pred             CCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCc-cCccChhhc
Confidence                    6678899999999999888778888999999988       333344678999999999986 8888652  


Q ss_pred             -----cCCCCCCCEEEecCCC
Q 041418          305 -----LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       305 -----l~~l~~L~~L~l~~~~  320 (349)
                           ...+++|+.|+++++|
T Consensus       263 ~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         263 CPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SCSSCCTTSCCCSEEECCSSS
T ss_pred             cCcchhcccCCCCEEECCCCc
Confidence                 3457899999999999

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=1.4e-14  Score=123.40  Aligned_cols=151  Identities=18%  Similarity=0.148  Sum_probs=85.1

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh-h--CCCCCCeeeccCCCCCC
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN-F--GLSCLKSLKLANESKMP  231 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~-~--~l~~L~~L~l~~~~~~~  231 (349)
                      +++.+++|++|++++|.++.+++ + .++++|+++++++|.++.++. +.++++|+.+. .  ....+..  +   ...+
T Consensus        58 ~l~~l~~L~~L~ls~n~i~~~~~-l-~~l~~l~~l~~~~n~~~~i~~-l~~l~~L~~l~l~~~~~~~~~~--~---~~~~  129 (227)
T d1h6ua2          58 GVQYLNNLIGLELKDNQITDLAP-L-KNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP--L---AGLS  129 (227)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-G-TTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTTSCCCCCGG--G---TTCT
T ss_pred             hHhcCCCCcEeecCCceeecccc-c-ccccccccccccccccccccc-ccccccccccccccccccccch--h---cccc
Confidence            46777888888888888877654 4 788888888888877777653 55555555554 0  0000000  0   3344


Q ss_pred             CccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCC
Q 041418          232 WLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAY  297 (349)
Q Consensus       232 ~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~  297 (349)
                      .++.+.++++        ...++|+.|++++|.+...  ..++++++|+.|+      .-....+.+++|++|++++|+ 
T Consensus       130 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~-  206 (227)
T d1h6ua2         130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ-  206 (227)
T ss_dssp             TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC-
T ss_pred             chhhhhchhhhhchhhhhccccccccccccccccccc--hhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCc-
Confidence            4555554443        4455566666666655432  2344445554444      001112445666666666664 


Q ss_pred             CCCCCcccCCCCCCCEEEec
Q 041418          298 LKKMPEHLWCIKSLNKFDCW  317 (349)
Q Consensus       298 l~~lp~~l~~l~~L~~L~l~  317 (349)
                      ++.+|+ ++++++|+.|+++
T Consensus       207 lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         207 ISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             CCBCGG-GTTCTTCCEEEEE
T ss_pred             CCCCcc-cccCCCCCEEEee
Confidence            666654 6666666666664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=3.7e-14  Score=123.80  Aligned_cols=181  Identities=18%  Similarity=0.118  Sum_probs=140.2

Q ss_pred             CCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhhhCCCCCCeeeccCCCCCCCccE
Q 041418          157 ENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSK  235 (349)
Q Consensus       157 ~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~  235 (349)
                      .+...+...+.++++++++|+++ .  +++++|+|++|.++.+|. .+.++++|++|+-.-.+|..+...  ..+++|+.
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~l-p--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~--~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDL-P--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC-C--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred             cccCCCeEEEccCCCCCeeCcCc-C--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccc--cccccccc
Confidence            45566777899999999999877 3  689999999999999975 578888888887222345555433  67889999


Q ss_pred             EEEccC---------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------cccc-ccccccccceeeeeccCCC
Q 041418          236 IVLAEY---------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWTM-GNAAMPKLECLIINPCAYL  298 (349)
Q Consensus       236 L~l~~~---------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~~-~~~~~~~L~~L~l~~c~~l  298 (349)
                      |++++|         ..+++|+.|++++|.+...+...+..+++++.|.       .+.. ....+++|+.+++++|. +
T Consensus        82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l  160 (266)
T d1p9ag_          82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-L  160 (266)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-C
T ss_pred             cccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc-c
Confidence            999888         6688999999999999888878888888888887       1111 11357889999999987 7


Q ss_pred             CCCCc-ccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeeccc
Q 041418          299 KKMPE-HLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGEM  346 (349)
Q Consensus       299 ~~lp~-~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~~  346 (349)
                      ..+|. .++.+++|++|++++|.   +..+..++.....+..+.+.||-
T Consensus       161 ~~~~~~~~~~l~~L~~L~Ls~N~---L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         161 TELPAGLLNGLENLDTLLLQENS---LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSC---CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccCccccccccccceeecccCC---CcccChhHCCCCCCCEEEecCCC
Confidence            77765 47889999999999997   33555555566677777777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=4.7e-14  Score=118.76  Aligned_cols=154  Identities=22%  Similarity=0.260  Sum_probs=104.4

Q ss_pred             CCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc
Q 041418          119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH  198 (349)
Q Consensus       119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~  198 (349)
                      +.+++.+.+.++....                 + .+++.+++|++|++++|.++.++. + +++++|++|++++|.++.
T Consensus        45 L~~L~~L~l~~~~i~~-----------------l-~~l~~l~~L~~L~L~~n~i~~l~~-~-~~l~~L~~L~l~~n~i~~  104 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS-----------------V-QGIQYLPNVTKLFLNGNKLTDIKP-L-ANLKNLGWLFLDENKVKD  104 (210)
T ss_dssp             HHTCCEEECTTSCCCC-----------------C-TTGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCC
T ss_pred             hcCccEEECcCCCCCC-----------------c-hhHhhCCCCCEEeCCCccccCccc-c-ccCccccccccccccccc
Confidence            3456777666655431                 2 246778899999999999998874 5 889999999999998888


Q ss_pred             cchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccC
Q 041418          199 TVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLET  267 (349)
Q Consensus       199 lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~  267 (349)
                      +|. +..+++|+.|+   .....+..+     ..+++++.++++++        ..+++|+.+++++|.+++.+      
T Consensus       105 l~~-l~~l~~L~~L~l~~~~~~~~~~l-----~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~------  172 (210)
T d1h6ta2         105 LSS-LKDLKKLKSLSLEHNGISDINGL-----VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV------  172 (210)
T ss_dssp             GGG-GTTCTTCCEEECTTSCCCCCGGG-----GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG------
T ss_pred             ccc-ccccccccccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccccc------
Confidence            874 76666666664   111222211     34455555555544        34556666666666554321      


Q ss_pred             CcccccccccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecC
Q 041418          268 LPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWW  318 (349)
Q Consensus       268 l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  318 (349)
                                  +.+.+++|+.|++++|. ++.+|. +..+++|++|++++
T Consensus       173 ------------~l~~l~~L~~L~Ls~N~-i~~l~~-l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 ------------PLAGLTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFS  209 (210)
T ss_dssp             ------------GGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEE
T ss_pred             ------------cccCCCCCCEEECCCCC-CCCChh-hcCCCCCCEEEccC
Confidence                        12467889999999886 888874 88899999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.51  E-value=3.4e-14  Score=118.58  Aligned_cols=52  Identities=23%  Similarity=0.300  Sum_probs=34.8

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccc
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKL  209 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L  209 (349)
                      +++.+++|++|++++|.++.+++ + +++++|++|++++|.+..+|. ++++++|
T Consensus        57 ~l~~l~nL~~L~Ls~N~l~~~~~-l-~~l~~L~~L~l~~n~~~~~~~-l~~l~~L  108 (199)
T d2omxa2          57 GVEYLNNLTQINFSNNQLTDITP-L-KNLTKLVDILMNNNQIADITP-LANLTNL  108 (199)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             ccccCCCcCcCccccccccCccc-c-cCCcccccccccccccccccc-ccccccc
Confidence            45667777777777777777664 4 777777777777776666653 4444433

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.46  E-value=6.4e-13  Score=121.19  Aligned_cols=176  Identities=18%  Similarity=0.127  Sum_probs=106.8

Q ss_pred             cccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCC
Q 041418          154 SGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKM  230 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~  230 (349)
                      .....+++++++++++|.++.+++ . +..++|++|++++|.++.+| .+..+++|+.|+   ..+..+..  +   ..+
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~-~-~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~---~~~  262 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITP-L-GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--L---SGL  262 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG-G-GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--G---TTC
T ss_pred             cccccccccceeeccCCccCCCCc-c-cccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--c---ccc
Confidence            345566777777777777776654 2 56777888888888777765 366666666665   11111111  1   455


Q ss_pred             CCccEEEEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccC
Q 041418          231 PWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCA  296 (349)
Q Consensus       231 ~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~  296 (349)
                      ++|+.|+++++        ..++.++.+.+..|.+.+.  ..+..+++++.|+      ........+++|++|++++|.
T Consensus       263 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC
T ss_pred             ccCCEeeccCcccCCCCccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCC
Confidence            66666666655        4456666677666666542  3455556666555      111223567788888888875


Q ss_pred             CCCCCCcccCCCCCCCEEEecCCCHHHHHhhhhcccccccccceeeecc
Q 041418          297 YLKKMPEHLWCIKSLNKFDCWWPQPELRQKLREFEDKEQQIPNRQSTGE  345 (349)
Q Consensus       297 ~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~~~  345 (349)
                       ++.+| .++.+++|++|++++|.   +..+. .+..+.++..+.+.+|
T Consensus       341 -l~~l~-~l~~l~~L~~L~l~~N~---l~~l~-~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 -VSDVS-SLANLTNINWLSAGHNQ---ISDLT-PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             -CCCCG-GGGGCTTCCEEECCSSC---CCBCG-GGTTCTTCSEEECCCE
T ss_pred             -CCCCh-hHcCCCCCCEEECCCCc---CCCCh-hhccCCCCCEeeCCCC
Confidence             77776 47778888888888776   22222 2344455555565554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.4e-13  Score=117.30  Aligned_cols=179  Identities=13%  Similarity=0.060  Sum_probs=137.6

Q ss_pred             CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch-hhhccccchhhh--------------hCCCCCCeeeccC-
Q 041418          163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD-EFWKMKKLRHLN--------------FGLSCLKSLKLAN-  226 (349)
Q Consensus       163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~--------------~~l~~L~~L~l~~-  226 (349)
                      ..++.++++++++|..+   .+++++|+|++|.++.+|. .+.++++|++|+              ..+..+..+.... 
T Consensus        14 ~~v~c~~~~L~~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34567788899999877   3678999999999999986 488999999998              4456666665431 


Q ss_pred             -C---------CCCCCccEEEEccC----------CCCCCccEEEEeecCCCCCCcccccCCccccccc-------ccc-
Q 041418          227 -E---------SKMPWLSKIVLAEY----------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD-------FWT-  278 (349)
Q Consensus       227 -~---------~~~~~L~~L~l~~~----------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~-------~~~-  278 (349)
                       .         ..+++|+.|+++++          ....+|+.+++++|.++..+...+..+++|+.|+       .+. 
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence             0         66789999999988          5678899999999999988878888899999887       111 


Q ss_pred             cccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeecccc
Q 041418          279 MGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMM  347 (349)
Q Consensus       279 ~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~  347 (349)
                      .....+++|+.+++++|......|..+..+++|++|+++++.   +..+.+ .+.....+..+.+.+|-+
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~---i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN---LSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC---CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhcccccccccc---cccccccccccccccCEEEecCCCC
Confidence            112457889999999988555557789999999999999987   223333 445566677777777754

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.38  E-value=1.8e-12  Score=107.85  Aligned_cols=147  Identities=18%  Similarity=0.190  Sum_probs=92.1

Q ss_pred             CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeee-ccCCCCCCCccEE
Q 041418          158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLK-LANESKMPWLSKI  236 (349)
Q Consensus       158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~-l~~~~~~~~L~~L  236 (349)
                      .+.++++|+++++.++.++ ++ +.+++|++|++++|.++.+++ ++++++|++|+-.-..+..+. +   ..+++|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l~-~l-~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l---~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID-GV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPL---ANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGG---TTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCcc-cc-ccCCCcCcCccccccccCccc-ccCCccccccccccccccccccc---ccccccccc
Confidence            3556777777777777664 45 677777777777777776664 666666666651111111111 1   455566666


Q ss_pred             EEccC--------CCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCCCCCC
Q 041418          237 VLAEY--------LFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMP  302 (349)
Q Consensus       237 ~l~~~--------~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp  302 (349)
                      +++++        ..+++|+.|++++|.+..  .+.+..+++|+.|.      ......+.+++|+.|++++|+.-. +|
T Consensus       112 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         112 TLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG
T ss_pred             cccccccccccccchhhhhHHhhhhhhhhcc--cccccccccccccccccccccCCccccCCCCCCEEECCCCCCCC-Cc
Confidence            66555        456667777777766543  23466666666665      112234778899999999988777 44


Q ss_pred             cccCCCCCCCEE
Q 041418          303 EHLWCIKSLNKF  314 (349)
Q Consensus       303 ~~l~~l~~L~~L  314 (349)
                       .++.+++|+.|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             37788888876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.6e-13  Score=117.36  Aligned_cols=137  Identities=18%  Similarity=0.151  Sum_probs=75.3

Q ss_pred             cCCCCCCCEEeecCCCCc-ccchhHHhcCcCCcEEeccCc-Cccc--cchhhhccccchhhhhCCCCCCeeeccC--C--
Q 041418          156 IENLFLLRYLKLNIPSLK-SLSSSLLSNLLNLYTLDMPFS-YIDH--TVDEFWKMKKLRHLNFGLSCLKSLKLAN--E--  227 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~-~lp~~if~~l~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~L~~~l~~L~~L~l~~--~--  227 (349)
                      +..+++|++|+++++.++ ..+..+ +++++|++|++++| .++.  +..-.          ..+++|++|++++  .  
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~----------~~~~~L~~L~ls~c~~~~  135 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLL----------SSCSRLDELNLSWCFDFT  135 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHH----------HHCTTCCEEECCCCTTCC
T ss_pred             HHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhh----------HHHHhccccccccccccc
Confidence            344555566666655544 233344 55556666666555 4432  11111          2334444444431  0  


Q ss_pred             ---------CCCCCccEEEEccC-------------CCCCCccEEEEeecC-CCCCCcccccCCcccccccccccccccc
Q 041418          228 ---------SKMPWLSKIVLAEY-------------LFPHSLTHLSFSNTD-RMDDPMPVLETLPLLQKADFWTMGNAAM  284 (349)
Q Consensus       228 ---------~~~~~L~~L~l~~~-------------~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~~~~~~~~~~  284 (349)
                               ..+++|+.|+++|+             ..+++|++|++++|. +++..+..                ...+
T Consensus       136 ~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~----------------l~~~  199 (284)
T d2astb2         136 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE----------------FFQL  199 (284)
T ss_dssp             HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG----------------GGGC
T ss_pred             cccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhh----------------hccc
Confidence                     22455666666554             335566666666553 22222222                2457


Q ss_pred             cccceeeeeccCCCCC-CCcccCCCCCCCEEEecCC
Q 041418          285 PKLECLIINPCAYLKK-MPEHLWCIKSLNKFDCWWP  319 (349)
Q Consensus       285 ~~L~~L~l~~c~~l~~-lp~~l~~l~~L~~L~l~~~  319 (349)
                      ++|++|++++|..+.. -...++++|+|+.|++.+|
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            8899999999876643 2234778899999999988

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=1.6e-12  Score=109.15  Aligned_cols=159  Identities=17%  Similarity=0.102  Sum_probs=101.7

Q ss_pred             CCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEE
Q 041418          158 NLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIV  237 (349)
Q Consensus       158 ~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~  237 (349)
                      .+..|++|++++|.++.++ ++ ..+++|++|++++|.++.+|+ ++.+++|++|+-.-.+++.+.           .  
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l-~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-----------~--  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GI-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS-----------S--  107 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG-----------G--
T ss_pred             HhcCccEEECcCCCCCCch-hH-hhCCCCCEEeCCCccccCccc-cccCccccccccccccccccc-----------c--
Confidence            4678999999999999886 46 899999999999999998875 666666655541111122111           0  


Q ss_pred             EccCCCCCCccEEEEeecCCCCCCcccccCCccccccc------ccccccccccccceeeeeccCCCCCCCcccCCCCCC
Q 041418          238 LAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKAD------FWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSL  311 (349)
Q Consensus       238 l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L  311 (349)
                         ...+++|+.|++++|.+..  ++.+..+++++.+.      .-......+++|+.+++++|. +..+++ +..+++|
T Consensus       108 ---l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~-l~~i~~-l~~l~~L  180 (210)
T d1h6ta2         108 ---LKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKL  180 (210)
T ss_dssp             ---GTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTC
T ss_pred             ---ccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccc-cccccc-ccCCCCC
Confidence               0334455555555554432  22344444444444      001122467899999999987 778875 8999999


Q ss_pred             CEEEecCCCHHHHHhhhhcccccccccceeee
Q 041418          312 NKFDCWWPQPELRQKLREFEDKEQQIPNRQST  343 (349)
Q Consensus       312 ~~L~l~~~~~~~~~~l~~~~~~i~~ip~i~~~  343 (349)
                      +.|++++|.   +.++. ....+.++..++++
T Consensus       181 ~~L~Ls~N~---i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         181 QNLYLSKNH---ISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CEEECCSSC---CCBCG-GGTTCTTCSEEEEE
T ss_pred             CEEECCCCC---CCCCh-hhcCCCCCCEEEcc
Confidence            999999997   22332 23344445445444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.31  E-value=1.3e-11  Score=110.79  Aligned_cols=190  Identities=19%  Similarity=0.205  Sum_probs=107.8

Q ss_pred             CCCeeEEEeecCCCCCCCcchHHhhhccCccccC----CcccCCC-CCCCEEeecCCCCcccchhHHhcCcCCcEEeccC
Q 041418          119 DSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRY----PSGIENL-FLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPF  193 (349)
Q Consensus       119 ~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~l----p~~i~~l-~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~  193 (349)
                      .+++++|.+.++....+     +..+.+++.|++    -..+..+ +.|++|++++|.++.+|. . +++++|++|++++
T Consensus        57 ~~~L~~L~Ls~N~l~~l-----p~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~-~-~~l~~L~~L~l~~  129 (353)
T d1jl5a_          57 PPHLESLVASCNSLTEL-----PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-L-QNSSFLKIIDVDN  129 (353)
T ss_dssp             CTTCSEEECCSSCCSSC-----CCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCC-C-TTCTTCCEEECCS
T ss_pred             CCCCCEEECCCCCCccc-----ccchhhhhhhhhhhcccchhhhhccccccccccccccccccc-h-hhhccceeecccc
Confidence            36788998887766532     223456666651    1223333 358999999999998885 4 7899999999998


Q ss_pred             cCccccchhhhccccchhhh---------hCCCCCCeeeccCC----------------------------CCCCCccEE
Q 041418          194 SYIDHTVDEFWKMKKLRHLN---------FGLSCLKSLKLANE----------------------------SKMPWLSKI  236 (349)
Q Consensus       194 ~~l~~lp~~i~~L~~L~~L~---------~~l~~L~~L~l~~~----------------------------~~~~~L~~L  236 (349)
                      |.+...|.....+..|....         +.++.++.+.+...                            ..++.|+.+
T Consensus       130 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l  209 (353)
T d1jl5a_         130 NSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI  209 (353)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEE
T ss_pred             ccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccccc
Confidence            87777776555544443322         34455555554310                            334566666


Q ss_pred             EEccC------CCCCCccEEEEeecCCCCCCcccccC----------Cccccccc-----------ccccccccccccce
Q 041418          237 VLAEY------LFPHSLTHLSFSNTDRMDDPMPVLET----------LPLLQKAD-----------FWTMGNAAMPKLEC  289 (349)
Q Consensus       237 ~l~~~------~~~~~L~~L~L~~~~l~~~~~~~l~~----------l~~L~~L~-----------~~~~~~~~~~~L~~  289 (349)
                      .++++      ....++..+.+..+.+...+ .....          +..+..+.           .+......+++|++
T Consensus       210 ~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~  288 (353)
T d1jl5a_         210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEE  288 (353)
T ss_dssp             ECCSSCCSSCCSCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCE
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhcccccccCccccccccCCCCCE
Confidence            66555      33344555555555443221 01110          11111111           11111123567888


Q ss_pred             eeeeccCCCCCCCcccCCCCCCCEEEecCCC
Q 041418          290 LIINPCAYLKKMPEHLWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       290 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  320 (349)
                      |++++|. +..+|.   .+++|+.|++++|.
T Consensus       289 L~Ls~N~-l~~lp~---~~~~L~~L~L~~N~  315 (353)
T d1jl5a_         289 LNVSNNK-LIELPA---LPPRLERLIASFNH  315 (353)
T ss_dssp             EECCSSC-CSCCCC---CCTTCCEEECCSSC
T ss_pred             EECCCCc-cCcccc---ccCCCCEEECCCCc
Confidence            8888775 777775   35677777777664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.27  E-value=2.3e-11  Score=103.06  Aligned_cols=166  Identities=17%  Similarity=0.155  Sum_probs=105.7

Q ss_pred             CCCCeeEEEeecCCCCCCCcchHHhhhccCcccc-------CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEe
Q 041418          118 YDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR-------YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLD  190 (349)
Q Consensus       118 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~-------lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~  190 (349)
                      ++.+++.+.+.++......  .+ ..+.+++.|.       -...+.++++|+++++++|.++.++. + +++++|++++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~l-~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~-l-~~l~~L~~l~  113 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE--GV-QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA-I-AGLQSIKTLD  113 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TG-GGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGG-G-TTCTTCCEEE
T ss_pred             HcCCcCEEECCCCCCCcch--hH-hcCCCCcEeecCCceeecccccccccccccccccccccccccc-c-cccccccccc
Confidence            3456777777766554221  11 1234444444       12348889999999999999998864 5 8999999999


Q ss_pred             ccCcCccccchhhhccccchhhhhCCCCCCee-eccCCCCCCCccEEEEccC--------CCCCCccEEEEeecCCCCCC
Q 041418          191 MPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSL-KLANESKMPWLSKIVLAEY--------LFPHSLTHLSFSNTDRMDDP  261 (349)
Q Consensus       191 l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L-~l~~~~~~~~L~~L~l~~~--------~~~~~L~~L~L~~~~l~~~~  261 (349)
                      +++|....++. +...+.++.+......+... .+   ..+++|+.|.+.++        ..+++|+.|++++|.++.. 
T Consensus       114 l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l-  188 (227)
T d1h6ua2         114 LTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPL---AGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI-  188 (227)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGG---GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-
T ss_pred             cccccccccch-hccccchhhhhchhhhhchhhhh---ccccccccccccccccccchhhcccccceecccCCCccCCC-
Confidence            99996666543 44445554443111111111 11   45666777777666        5678888888888887653 


Q ss_pred             cccccCCccccccc------ccccccccccccceeeeec
Q 041418          262 MPVLETLPLLQKAD------FWTMGNAAMPKLECLIINP  294 (349)
Q Consensus       262 ~~~l~~l~~L~~L~------~~~~~~~~~~~L~~L~l~~  294 (349)
                       +.++.+++|++|+      +-..+.+.+++|+.|++++
T Consensus       189 -~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 -SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             -hhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence             4577788888887      1112335678888888864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.6e-12  Score=103.25  Aligned_cols=134  Identities=16%  Similarity=0.094  Sum_probs=85.2

Q ss_pred             ccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCcc
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLS  234 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~  234 (349)
                      .+.+...+|.|+|++|+|+.+|... ..+++|++|++++|.++.++. +..++          +|++|+++   + ..+.
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~-~~l~~L~~L~Ls~N~i~~l~~-~~~l~----------~L~~L~ls---~-N~i~   76 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDG-FPLLR----------RLKTLLVN---N-NRIC   76 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGG-GGTTCCSEEECCSSCCCEECC-CCCCS----------SCCEEECC---S-SCCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccc-cccccCCEEECCCCCCCccCC-cccCc----------chhhhhcc---c-cccc
Confidence            3567778999999999999998654 889999999999998888753 43333          33333331   1 1122


Q ss_pred             EEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc----ccCCCCC
Q 041418          235 KIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE----HLWCIKS  310 (349)
Q Consensus       235 ~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~----~l~~l~~  310 (349)
                      .+.-.-...+++|+.|++++|.+...+  .+.             ....+++|+.|++++|+ +...|.    .+..+|+
T Consensus        77 ~l~~~~~~~l~~L~~L~L~~N~i~~~~--~l~-------------~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~  140 (162)
T d1a9na_          77 RIGEGLDQALPDLTELILTNNSLVELG--DLD-------------PLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQ  140 (162)
T ss_dssp             EECSCHHHHCTTCCEEECCSCCCCCGG--GGG-------------GGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTT
T ss_pred             CCCccccccccccccceeccccccccc--ccc-------------ccccccccchhhcCCCc-cccccchHHHHHHHCCC
Confidence            221000034677777788877765321  110             11456788888888877 666664    3567788


Q ss_pred             CCEEEecCCC
Q 041418          311 LNKFDCWWPQ  320 (349)
Q Consensus       311 L~~L~l~~~~  320 (349)
                      |++|+-....
T Consensus       141 L~~LD~~~i~  150 (162)
T d1a9na_         141 VRVLDFQKVK  150 (162)
T ss_dssp             CSEETTEECC
T ss_pred             cCeeCCCCCC
Confidence            8888765544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.3e-11  Score=105.54  Aligned_cols=167  Identities=13%  Similarity=0.053  Sum_probs=91.1

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc-cch-hhhccccchhhh-hCCCCCCeeeccCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH-TVD-EFWKMKKLRHLN-FGLSCLKSLKLANES  228 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~-lp~-~i~~L~~L~~L~-~~l~~L~~L~l~~~~  228 (349)
                      +|+.+.  +++++|++++|.++.+|...|.++++|++|++++|.+.. +|. .+..+++++++. ....++.......-.
T Consensus        23 iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~  100 (242)
T d1xwdc1          23 IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ  100 (242)
T ss_dssp             CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEE
T ss_pred             cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccc
Confidence            555442  478889999988888888766888999999998885544 443 355666666654 112223222210003


Q ss_pred             CCCCccEEEEccC--------CCCCCcc---EEEEeecCCCCCCcccccCCc-cccccc-------ccccccccccccce
Q 041418          229 KMPWLSKIVLAEY--------LFPHSLT---HLSFSNTDRMDDPMPVLETLP-LLQKAD-------FWTMGNAAMPKLEC  289 (349)
Q Consensus       229 ~~~~L~~L~l~~~--------~~~~~L~---~L~L~~~~l~~~~~~~l~~l~-~L~~L~-------~~~~~~~~~~~L~~  289 (349)
                      .+++|+.++++++        ..+.+++   .+...++.+...+...+..++ .++.|.       .+.......++++.
T Consensus       101 ~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~  180 (242)
T d1xwdc1         101 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDE  180 (242)
T ss_dssp             CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEE
T ss_pred             ccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhc
Confidence            4556666666555        1222233   333333344333333333332 333333       11111112344555


Q ss_pred             eeeeccCCCCCCCcc-cCCCCCCCEEEecCCC
Q 041418          290 LIINPCAYLKKMPEH-LWCIKSLNKFDCWWPQ  320 (349)
Q Consensus       290 L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~  320 (349)
                      +...++..++++|.+ +..+++|++|+++++.
T Consensus       181 ~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         181 LNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             EECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            554445557888764 5778888888888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.22  E-value=2.4e-11  Score=108.97  Aligned_cols=57  Identities=18%  Similarity=0.023  Sum_probs=39.4

Q ss_pred             CCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCcccc
Q 041418          120 SQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHT  199 (349)
Q Consensus       120 ~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~l  199 (349)
                      .+++.|.+.+.....                 +|+.   .++|++|++++|+++++|..+    .+|+.|++++|.++.+
T Consensus        38 ~~l~~LdLs~~~L~~-----------------lp~~---~~~L~~L~Ls~N~l~~lp~~~----~~L~~L~l~~n~l~~l   93 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-----------------LPEL---PPHLESLVASCNSLTELPELP----QSLKSLLVDNNNLKAL   93 (353)
T ss_dssp             HTCSEEECTTSCCSC-----------------CCSC---CTTCSEEECCSSCCSSCCCCC----TTCCEEECCSSCCSCC
T ss_pred             cCCCEEEeCCCCCCC-----------------CCCC---CCCCCEEECCCCCCcccccch----hhhhhhhhhhcccchh
Confidence            477888776654431                 5543   467899999999999998654    4666677777655555


Q ss_pred             c
Q 041418          200 V  200 (349)
Q Consensus       200 p  200 (349)
                      +
T Consensus        94 ~   94 (353)
T d1jl5a_          94 S   94 (353)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=4.6e-12  Score=97.07  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=22.9

Q ss_pred             cCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccc
Q 041418          156 IENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTV  200 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp  200 (349)
                      ++.+++|++|++++|.++++|+.+ +.+++|++|++++|.++.+|
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~-~~l~~L~~L~l~~N~i~~l~   59 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVD   59 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGG-GGCTTCCEEECCSSCCCCCG
T ss_pred             cccCCCCCEEECCCCccCcchhhh-hhhhcccccccccccccccC
Confidence            444555555555555555555444 55555555555555555444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=2.6e-11  Score=100.06  Aligned_cols=113  Identities=14%  Similarity=0.117  Sum_probs=77.0

Q ss_pred             CCcccCCCCCCCEEeecCCCCcc-cchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCCCCC
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKS-LSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKM  230 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~-lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~  230 (349)
                      +|..+.  +++++|+|++|.|+. ++...|+++++|+.|++++|.+..+|....                          
T Consensus        23 iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~--------------------------   74 (192)
T d1w8aa_          23 IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF--------------------------   74 (192)
T ss_dssp             CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT--------------------------
T ss_pred             cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccc--------------------------
Confidence            454442  467777777777753 545555777777777777776666654221                          


Q ss_pred             CCccEEEEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcc-cCCCC
Q 041418          231 PWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEH-LWCIK  309 (349)
Q Consensus       231 ~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~-l~~l~  309 (349)
                                 ..+++|+.|++++|++...+...|                ..+++|+.|+|++|. +..+|++ +..++
T Consensus        75 -----------~~~~~L~~L~Ls~N~l~~l~~~~F----------------~~l~~L~~L~L~~N~-l~~i~~~~f~~l~  126 (192)
T d1w8aa_          75 -----------EGASHIQELQLGENKIKEISNKMF----------------LGLHQLKTLNLYDNQ-ISCVMPGSFEHLN  126 (192)
T ss_dssp             -----------TTCTTCCEEECCSCCCCEECSSSS----------------TTCTTCCEEECCSSC-CCEECTTSSTTCT
T ss_pred             -----------ccccccceeeeccccccccCHHHH----------------hCCCcccccccCCcc-ccccCHHHhcCCc
Confidence                       345667777788888776554444                456778888888876 7777664 67888


Q ss_pred             CCCEEEecCCC
Q 041418          310 SLNKFDCWWPQ  320 (349)
Q Consensus       310 ~L~~L~l~~~~  320 (349)
                      +|++|++++++
T Consensus       127 ~L~~l~L~~N~  137 (192)
T d1w8aa_         127 SLTSLNLASNP  137 (192)
T ss_dssp             TCCEEECTTCC
T ss_pred             ccccccccccc
Confidence            99999998876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-11  Score=99.06  Aligned_cols=126  Identities=15%  Similarity=0.053  Sum_probs=85.5

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCccccCCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcC
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLRYPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSY  195 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~  195 (349)
                      ..+..++|.|.+.++....                 +|..+..+++|++|++++|.+++++. + +.+++|++|++++|.
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-----------------i~~~~~~l~~L~~L~Ls~N~i~~l~~-~-~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-----------------IENLGATLDQFDAIDFSDNEIRKLDG-F-PLLRRLKTLLVNNNR   74 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-----------------CCCGGGGTTCCSEEECCSSCCCEECC-C-CCCSSCCEEECCSSC
T ss_pred             ccCcCcCcEEECCCCCCCc-----------------cCccccccccCCEEECCCCCCCccCC-c-ccCcchhhhhccccc
Confidence            3456789999999887753                 44445678889999999999998864 5 899999999999999


Q ss_pred             ccccchhh-hccccchhhhhCCCCCCeeeccCC--CCCCCccEEEEccCCCCCCccEEEEeecCCCCCCc---ccccCCc
Q 041418          196 IDHTVDEF-WKMKKLRHLNFGLSCLKSLKLANE--SKMPWLSKIVLAEYLFPHSLTHLSFSNTDRMDDPM---PVLETLP  269 (349)
Q Consensus       196 l~~lp~~i-~~L~~L~~L~~~l~~L~~L~l~~~--~~~~~L~~L~l~~~~~~~~L~~L~L~~~~l~~~~~---~~l~~l~  269 (349)
                      ++.+|+.+ ..+++|++|          ++.++  ...+.+..+     ..+++|++|++++|.+...+.   ..+..+|
T Consensus        75 i~~l~~~~~~~l~~L~~L----------~L~~N~i~~~~~l~~l-----~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp  139 (162)
T d1a9na_          75 ICRIGEGLDQALPDLTEL----------ILTNNSLVELGDLDPL-----ASLKSLTYLCILRNPVTNKKHYRLYVIYKVP  139 (162)
T ss_dssp             CCEECSCHHHHCTTCCEE----------ECCSCCCCCGGGGGGG-----GGCTTCCEEECCSSGGGGSTTHHHHHHHHCT
T ss_pred             ccCCCccccccccccccc----------eecccccccccccccc-----ccccccchhhcCCCccccccchHHHHHHHCC
Confidence            99988754 344444444          43211  011111111     557888999999988765441   2455566


Q ss_pred             cccccc
Q 041418          270 LLQKAD  275 (349)
Q Consensus       270 ~L~~L~  275 (349)
                      +|++|+
T Consensus       140 ~L~~LD  145 (162)
T d1a9na_         140 QVRVLD  145 (162)
T ss_dssp             TCSEET
T ss_pred             CcCeeC
Confidence            666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=7.8e-11  Score=90.01  Aligned_cols=90  Identities=20%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             CEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhh---hCCCCCCeeeccCCCCCCCccEEEEc
Q 041418          163 RYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLN---FGLSCLKSLKLANESKMPWLSKIVLA  239 (349)
Q Consensus       163 ~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~---~~l~~L~~L~l~~~~~~~~L~~L~l~  239 (349)
                      |+|++++|+++.+|. + +++++|++|++++|.++.+|++++.+++|+.|+   ..++.+..  +   ..+++|+.|+++
T Consensus         1 R~L~Ls~n~l~~l~~-l-~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~--~---~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-L-EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG--V---ANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSCCC-G-GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG--G---TTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCCcc-c-ccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc--c---ccccccCeEECC
Confidence            688999999988874 5 889999999999998899988888888888887   23333332  2   567778888877


Q ss_pred             cC-----------CCCCCccEEEEeecCCCC
Q 041418          240 EY-----------LFPHSLTHLSFSNTDRMD  259 (349)
Q Consensus       240 ~~-----------~~~~~L~~L~L~~~~l~~  259 (349)
                      +|           ..+++|+.|++++|.++.
T Consensus        74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            77           456789999999988754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=1.1e-12  Score=109.02  Aligned_cols=59  Identities=22%  Similarity=0.209  Sum_probs=47.0

Q ss_pred             CCcccCCCCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhh
Q 041418          152 YPSGIENLFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHL  212 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L  212 (349)
                      +|.+++.+++|++|++++|.|+.++ .+ +.+++|++|++++|.++.+|.....+++|++|
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l-~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SL-SGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CH-HHHTTCCEEECCEEEECSCSSHHHHHHHCCEE
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cc-cCCccccChhhccccccccccccccccccccc
Confidence            4567888999999999999999986 45 89999999999999988888655444444444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.93  E-value=7.2e-10  Score=91.14  Aligned_cols=127  Identities=9%  Similarity=0.069  Sum_probs=96.7

Q ss_pred             CCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccc-cchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEcc
Q 041418          162 LRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDH-TVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAE  240 (349)
Q Consensus       162 L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~  240 (349)
                      .+.++.++++++++|..+ .  +++++|+|++|.++. ++....                                    
T Consensus        10 ~~~v~Cs~~~L~~iP~~l-p--~~l~~L~Ls~N~i~~~~~~~~f------------------------------------   50 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI-P--LHTTELLLNDNELGRISSDGLF------------------------------------   50 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC-C--TTCSEEECCSCCCCSBCCSCSG------------------------------------
T ss_pred             CCEEEEeCCCcCccCCCC-C--CCCCEEEeCCCCCccccccccc------------------------------------
Confidence            467899999999999877 3  789999999998865 433211                                    


Q ss_pred             CCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc-ccCCCCCCCEEEecCC
Q 041418          241 YLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE-HLWCIKSLNKFDCWWP  319 (349)
Q Consensus       241 ~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~  319 (349)
                       ..+++|+.|++++|.+...+...+                ..+++|+.|++++|+ +..+|+ .+..+++|++|+++++
T Consensus        51 -~~l~~L~~L~L~~N~i~~~~~~~~----------------~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N  112 (192)
T d1w8aa_          51 -GRLPHLVKLELKRNQLTGIEPNAF----------------EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDN  112 (192)
T ss_dssp             -GGCTTCCEEECCSSCCCCBCTTTT----------------TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSS
T ss_pred             -CCCceEeeeecccccccccccccc----------------ccccccceeeecccc-ccccCHHHHhCCCcccccccCCc
Confidence             234567777888888776554444                457889999999987 888876 4788999999999999


Q ss_pred             CHHHHHhhhh-cccccccccceeeeccccc
Q 041418          320 QPELRQKLRE-FEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       320 ~~~~~~~l~~-~~~~i~~ip~i~~~~~~~~  348 (349)
                      .   +..+.+ .+..+..+..+.+.+|.+.
T Consensus       113 ~---l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         113 Q---ISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C---CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             c---ccccCHHHhcCCcccccccccccccc
Confidence            8   445555 5677788888888888653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.5e-10  Score=99.07  Aligned_cols=147  Identities=16%  Similarity=0.150  Sum_probs=91.5

Q ss_pred             CCCCCCeeEEEeecCCCCCCCcchHHhhhccCcccc------------CCcccCCCCCCCEEeecCC-CCcc--cchhHH
Q 041418          116 DDYDSQLHSFLCCSPESRHIDPIDWEKICGMFKLLR------------YPSGIENLFLLRYLKLNIP-SLKS--LSSSLL  180 (349)
Q Consensus       116 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~l~~L~------------lp~~i~~l~~L~~L~l~~~-~l~~--lp~~if  180 (349)
                      .....+++.+.+.+....   ...+...+..+..|+            .+..++.+++|++|+++++ .++.  +.. ++
T Consensus        42 ~~~~~~L~~LdLs~~~i~---~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~-l~  117 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIE---VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LL  117 (284)
T ss_dssp             CCCCBCCCEEECTTCEEC---HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HH
T ss_pred             hccCCCCCEEECCCCccC---HHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccch-hh
Confidence            344567888887765432   233444555554444            3456788999999999996 6663  333 33


Q ss_pred             hcCcCCcEEeccCc-Cccc--cchhhhccccchhhhhCCCCCCeeeccC---C----------CCCCCccEEEEccC---
Q 041418          181 SNLLNLYTLDMPFS-YIDH--TVDEFWKMKKLRHLNFGLSCLKSLKLAN---E----------SKMPWLSKIVLAEY---  241 (349)
Q Consensus       181 ~~l~~L~~L~l~~~-~l~~--lp~~i~~L~~L~~L~~~l~~L~~L~l~~---~----------~~~~~L~~L~l~~~---  241 (349)
                      ..+++|++|++++| .++.  ++..+...         .++|+.|.+++   .          ..+++|++|++++|   
T Consensus       118 ~~~~~L~~L~ls~c~~~~~~~~~~~~~~~---------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i  188 (284)
T d2astb2         118 SSCSRLDELNLSWCFDFTEKHVQVAVAHV---------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML  188 (284)
T ss_dssp             HHCTTCCEEECCCCTTCCHHHHHHHHHHS---------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             HHHHhccccccccccccccccchhhhccc---------ccccchhhhcccccccccccccccccccccccccccccccCC
Confidence            78999999999998 5543  23333322         23444444431   0          45678888888776   


Q ss_pred             --------CCCCCccEEEEeecC-CCCCCcccccCCccccccc
Q 041418          242 --------LFPHSLTHLSFSNTD-RMDDPMPVLETLPLLQKAD  275 (349)
Q Consensus       242 --------~~~~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~  275 (349)
                              ..+++|++|++++|. +++..+..++++|+|+.|+
T Consensus       189 td~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~  231 (284)
T d2astb2         189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  231 (284)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             CchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEe
Confidence                    567899999999974 5544444454444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.8e-09  Score=89.67  Aligned_cols=181  Identities=13%  Similarity=0.050  Sum_probs=111.5

Q ss_pred             CCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccchhhh-hCCCCCCeeeccCCCCCCCccEEEEc
Q 041418          162 LRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLRHLN-FGLSCLKSLKLANESKMPWLSKIVLA  239 (349)
Q Consensus       162 L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~-~~l~~L~~L~l~~~~~~~~L~~L~l~  239 (349)
                      .+.++.++++++++|.++   .+++++|++++|.++.+|.. +.++++|++|+ ........+....-..++.++++.+.
T Consensus        10 ~~~i~c~~~~l~~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCSSCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEeCCCCCCcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            368889999999999877   25899999999999999874 67788888776 11111111110000345666666654


Q ss_pred             cC-----------CCCCCccEEEEeecCCCCCCc-ccccCCccccccc----cc-cccccc----ccccceeeeeccCCC
Q 041418          240 EY-----------LFPHSLTHLSFSNTDRMDDPM-PVLETLPLLQKAD----FW-TMGNAA----MPKLECLIINPCAYL  298 (349)
Q Consensus       240 ~~-----------~~~~~L~~L~L~~~~l~~~~~-~~l~~l~~L~~L~----~~-~~~~~~----~~~L~~L~l~~c~~l  298 (349)
                      .+           ..+++|+.|+++.|.+...+. ..+..+..+..+.    .. ......    ...++.|++++|. +
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~-l  165 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-I  165 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-C
T ss_pred             ccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccc-c
Confidence            32           568899999999998865432 2222333333222    00 001112    2367788888766 8


Q ss_pred             CCCCcccCCCCCCCEEEecCCCHHHHHhhhh-cccccccccceeeeccccc
Q 041418          299 KKMPEHLWCIKSLNKFDCWWPQPELRQKLRE-FEDKEQQIPNRQSTGEMMS  348 (349)
Q Consensus       299 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~l~~-~~~~i~~ip~i~~~~~~~~  348 (349)
                      ..++......++++.+...++.  .+.++.. .+.+...+..+.+.+|.++
T Consensus       166 ~~i~~~~~~~~~l~~~~~l~~n--~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         166 QEIHNCAFNGTQLDELNLSDNN--NLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CEECTTTTTTCCEEEEECTTCT--TCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccccchhhhcccccccc--ccccccHHHhcCCCCCCEEECCCCcCC
Confidence            8888877777887777654443  1223333 3555666666776666543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.84  E-value=2.8e-10  Score=94.18  Aligned_cols=122  Identities=17%  Similarity=0.171  Sum_probs=83.0

Q ss_pred             CCCEEeecCC--CCcccchhHHhcCcCCcEEeccCcCccccchhhhccccchhhhhCCCCCCeeeccCC--CCCCCccEE
Q 041418          161 LLRYLKLNIP--SLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANE--SKMPWLSKI  236 (349)
Q Consensus       161 ~L~~L~l~~~--~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~--~~~~~L~~L  236 (349)
                      .++.+++++.  .++.+|.++ +.+++|++|++++|.++.++. +..+++|++|          +++++  ..++.+.  
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl-~~L~~L~~L~Ls~n~I~~i~~-l~~l~~L~~L----------~Ls~N~i~~i~~~~--   89 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATL-STLKACKHLALSTNNIEKISS-LSGMENLRIL----------SLGRNLIKKIENLD--   89 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHH-HHTTTCCEEECSEEEESCCCC-HHHHTTCCEE----------ECCEEEECSCSSHH--
T ss_pred             ccceeeeecccCchhhhhhHH-hcccccceeECcccCCCCccc-ccCCccccCh----------hhcccccccccccc--
Confidence            3555677664  578898888 999999999999999988863 6655544444          33200  0111110  


Q ss_pred             EEccCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCc--ccCCCCCCCEE
Q 041418          237 VLAEYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPE--HLWCIKSLNKF  314 (349)
Q Consensus       237 ~l~~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~--~l~~l~~L~~L  314 (349)
                           ..+++|+.|++++|.++..  +.+                ..+++|+.|++++|. +..++.  .+..+++|+.|
T Consensus        90 -----~~~~~L~~L~l~~N~i~~l--~~~----------------~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_          90 -----AVADTLEELWISYNQIASL--SGI----------------EKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             -----HHHHHCCEEECSEEECCCH--HHH----------------HHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred             -----ccccccccccccccccccc--ccc----------------cccccccccccccch-hccccccccccCCCcccee
Confidence                 2235678888888876532  111                457889999999886 777763  57889999999


Q ss_pred             EecCCC
Q 041418          315 DCWWPQ  320 (349)
Q Consensus       315 ~l~~~~  320 (349)
                      ++++||
T Consensus       146 ~L~~N~  151 (198)
T d1m9la_         146 LLAGNP  151 (198)
T ss_dssp             EECSSH
T ss_pred             ecCCCc
Confidence            999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.4e-08  Score=78.91  Aligned_cols=105  Identities=14%  Similarity=-0.071  Sum_probs=62.7

Q ss_pred             CCCEEeecCCCCcccchhHHhcCcCCcEEeccCc-CccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEc
Q 041418          161 LLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLA  239 (349)
Q Consensus       161 ~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~  239 (349)
                      ....++.+++.+.+.|..+ ..+++|+.|+++++ .++.+|....                                   
T Consensus         9 ~~~~l~c~~~~~~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f-----------------------------------   52 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDL-----------------------------------   52 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTS-CSCSCCSEEECCSCSSCCEECGGGS-----------------------------------
T ss_pred             CCCeEEecCCCCccCcccc-cCccccCeeecCCCccccccCchhh-----------------------------------
Confidence            3445666666666666666 66677777777655 4666654210                                   


Q ss_pred             cCCCCCCccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCCCcccCCCCCCCEEEecCC
Q 041418          240 EYLFPHSLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKMPEHLWCIKSLNKFDCWWP  319 (349)
Q Consensus       240 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  319 (349)
                        ..+++|+.|++++|+++..+...|                ..+++|+.|+|++|. ++.+|.......+|+.|+++++
T Consensus        53 --~~l~~L~~L~Ls~N~l~~i~~~~f----------------~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          53 --RGLGELRNLTIVKSGLRFVAPDAF----------------HFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             --CSCCCCSEEECCSSCCCEECTTGG----------------GSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred             --ccccccCcceeeccccCCcccccc----------------cccccccceeccCCC-CcccChhhhccccccccccCCC
Confidence              223455555566666554433333                345667777777766 6777766555556777777776


Q ss_pred             C
Q 041418          320 Q  320 (349)
Q Consensus       320 ~  320 (349)
                      |
T Consensus       114 p  114 (156)
T d2ifga3         114 P  114 (156)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.9e-09  Score=97.33  Aligned_cols=36  Identities=28%  Similarity=0.308  Sum_probs=19.1

Q ss_pred             CCCEEeecCCCCcc-----cchhHHhcCcCCcEEeccCcCcc
Q 041418          161 LLRYLKLNIPSLKS-----LSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       161 ~L~~L~l~~~~l~~-----lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      +|++|++++|.++.     ++..+ ..+++|++|++++|.++
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~~l-~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCH
T ss_pred             CCCEEECCCCCccccccccccchh-hccccccccccccccch
Confidence            46666666665543     22233 45566666666665443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.8e-07  Score=73.79  Aligned_cols=59  Identities=19%  Similarity=0.088  Sum_probs=42.3

Q ss_pred             CCcccCCCCCCCEEeecCC-CCcccchhHHhcCcCCcEEeccCcCccccchh-hhccccch
Q 041418          152 YPSGIENLFLLRYLKLNIP-SLKSLSSSLLSNLLNLYTLDMPFSYIDHTVDE-FWKMKKLR  210 (349)
Q Consensus       152 lp~~i~~l~~L~~L~l~~~-~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~  210 (349)
                      .|..+..+++|+.|+++++ .++.++...|.++++|+.|++++|.++.+++. +..+++|+
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            5666777788888888765 58888776668888888888888888888543 44444333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.41  E-value=5.1e-08  Score=87.11  Aligned_cols=59  Identities=17%  Similarity=0.076  Sum_probs=36.4

Q ss_pred             cccCCCCCCCEEeecCCCCccc----c-------hhHHhcCcCCcEEeccCcCccc-----cchhhhccccchhhh
Q 041418          154 SGIENLFLLRYLKLNIPSLKSL----S-------SSLLSNLLNLYTLDMPFSYIDH-----TVDEFWKMKKLRHLN  213 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~l----p-------~~if~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~  213 (349)
                      ..+...++|+.++++++.....    |       ..+ ...++|+.|++++|.++.     +...+...++|++|+
T Consensus        53 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~  127 (344)
T d2ca6a1          53 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL-LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY  127 (344)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH-TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHH-hhCCCcccccccccccccccccchhhhhcccccchhee
Confidence            3466778888999887654322    2       223 567889999998886554     333344455555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.34  E-value=1.3e-07  Score=84.37  Aligned_cols=43  Identities=16%  Similarity=0.059  Sum_probs=34.1

Q ss_pred             cccCCCCCCCEEeecCCCCcc-----cchhHHhcCcCCcEEeccCcCcc
Q 041418          154 SGIENLFLLRYLKLNIPSLKS-----LSSSLLSNLLNLYTLDMPFSYID  197 (349)
Q Consensus       154 ~~i~~l~~L~~L~l~~~~l~~-----lp~~if~~l~~L~~L~l~~~~l~  197 (349)
                      ..+...++|+.|++++|.++.     +...+ ...++|+.|++++|.++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~n~l~  134 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLG  134 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCH
T ss_pred             HHHhhCCCcccccccccccccccccchhhhh-cccccchheeccccccc
Confidence            445678899999999998764     44444 78899999999999654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.8e-05  Score=61.07  Aligned_cols=47  Identities=23%  Similarity=0.174  Sum_probs=38.3

Q ss_pred             ccCCCCCCCEEeecCCCCcccch--hHHhcCcCCcEEeccCcCccccch
Q 041418          155 GIENLFLLRYLKLNIPSLKSLSS--SLLSNLLNLYTLDMPFSYIDHTVD  201 (349)
Q Consensus       155 ~i~~l~~L~~L~l~~~~l~~lp~--~if~~l~~L~~L~l~~~~l~~lp~  201 (349)
                      ....+++|++|++++|+|+.++.  ..+..+++|++|++++|.++.+++
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~  108 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE  108 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGG
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchh
Confidence            34568899999999999987653  333889999999999999998876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=4.6e-05  Score=69.16  Aligned_cols=15  Identities=0%  Similarity=-0.090  Sum_probs=10.2

Q ss_pred             CCCCCCCEEEecCCC
Q 041418          306 WCIKSLNKFDCWWPQ  320 (349)
Q Consensus       306 ~~l~~L~~L~l~~~~  320 (349)
                      ...+.++.+.++++.
T Consensus       166 ~~~~~~~~~~ls~~~  180 (460)
T d1z7xw1         166 RAKPDFKELTVSNND  180 (460)
T ss_dssp             HHCTTCCEEECCSSB
T ss_pred             ccccccccccccccc
Confidence            345677788877765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=1.3e-05  Score=63.02  Aligned_cols=42  Identities=14%  Similarity=0.085  Sum_probs=26.6

Q ss_pred             CCCCCEEeecCCCCcccchhHHhcCcCCcEEeccCcCccccch
Q 041418          159 LFLLRYLKLNIPSLKSLSSSLLSNLLNLYTLDMPFSYIDHTVD  201 (349)
Q Consensus       159 l~~L~~L~l~~~~l~~lp~~if~~l~~L~~L~l~~~~l~~lp~  201 (349)
                      +..+..+....+....+ ..++.++++|++|++++|.++.++.
T Consensus        41 ~~~~~~l~~~~~~~~~l-~~~~~~~~~L~~L~Ls~N~i~~l~~   82 (162)
T d1koha1          41 QNIDVVLNRRSSMAATL-RIIEENIPELLSLNLSNNRLYRLDD   82 (162)
T ss_dssp             TTCCCCTTSHHHHHHHH-HHHHHHCTTCCCCCCCSSCCCCCSG
T ss_pred             ccchhhcchhhhHhhhh-HHHHHhCCCCCEeeCCCccccCCch
Confidence            33334444433333333 3444789999999999998887753

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.21  E-value=0.059  Score=41.30  Aligned_cols=13  Identities=15%  Similarity=0.271  Sum_probs=6.8

Q ss_pred             CCCccEEEEeecC
Q 041418          244 PHSLTHLSFSNTD  256 (349)
Q Consensus       244 ~~~L~~L~L~~~~  256 (349)
                      -++|++|++++|.
T Consensus        99 n~sL~~L~l~~n~  111 (167)
T d1pgva_          99 TQSIVEFKADNQR  111 (167)
T ss_dssp             TCCCSEEECCCCS
T ss_pred             CCcCCEEECCCCc
Confidence            3445555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.15  E-value=0.014  Score=45.09  Aligned_cols=110  Identities=10%  Similarity=0.018  Sum_probs=62.8

Q ss_pred             hcCcCCcEEeccCc-CccccchhhhccccchhhhhCCCCCCeeeccCCCCCCCccEEEEccC--------------CCCC
Q 041418          181 SNLLNLYTLDMPFS-YIDHTVDEFWKMKKLRHLNFGLSCLKSLKLANESKMPWLSKIVLAEY--------------LFPH  245 (349)
Q Consensus       181 ~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~~~l~~L~~L~l~~~~~~~~L~~L~l~~~--------------~~~~  245 (349)
                      .+.++|+.|+|+++ .++.  +++..+.  +.|               ...+.|++|++++|              ...+
T Consensus        12 ~n~~~L~~L~L~~~~~i~~--~~~~~l~--~~L---------------~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~   72 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSK--ERIRSLI--EAA---------------CNSKHIEKFSLANTAISDSEARGLIELIETSP   72 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCH--HHHHHHH--HHH---------------TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS
T ss_pred             hCCCCCcEEEeCCCCCCCH--HHHHHHH--HHH---------------hhCCccceeeccccccchhHHHHHhhhhhhcc
Confidence            45688999999875 4432  2221110  011               23345555555555              3456


Q ss_pred             CccEEEEeecCCCCCCcccccCCcccccccccccccccccccceeeeeccCCCCCC--------CcccCCCCCCCEEEec
Q 041418          246 SLTHLSFSNTDRMDDPMPVLETLPLLQKADFWTMGNAAMPKLECLIINPCAYLKKM--------PEHLWCIKSLNKFDCW  317 (349)
Q Consensus       246 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~~~~~~~~~~~~L~~L~l~~c~~l~~l--------p~~l~~l~~L~~L~l~  317 (349)
                      .|+.|++++|.+.......+..            ....-++|++|++++|. ...+        ...+..-++|+.|+++
T Consensus        73 ~L~~L~L~~n~i~~~g~~~l~~------------aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~  139 (167)
T d1pgva_          73 SLRVLNVESNFLTPELLARLLR------------STLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGIS  139 (167)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHH------------HTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             cccceeeehhhcchHHHHHHHH------------HHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCc
Confidence            7888888888876533222210            01234668888888764 3332        2234456889999998


Q ss_pred             CCCHH
Q 041418          318 WPQPE  322 (349)
Q Consensus       318 ~~~~~  322 (349)
                      .+...
T Consensus       140 ~~~~~  144 (167)
T d1pgva_         140 FASME  144 (167)
T ss_dssp             CCCHH
T ss_pred             CCCch
Confidence            87644

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.02  E-value=0.065  Score=40.89  Aligned_cols=40  Identities=13%  Similarity=0.145  Sum_probs=19.3

Q ss_pred             cCCCCCCCEEeecCCCCcc-----cchhHHhcCcCCcEEeccCcCc
Q 041418          156 IENLFLLRYLKLNIPSLKS-----LSSSLLSNLLNLYTLDMPFSYI  196 (349)
Q Consensus       156 i~~l~~L~~L~l~~~~l~~-----lp~~if~~l~~L~~L~l~~~~l  196 (349)
                      +...++|+.|++++|.++.     +-..+ ...+.++.+++++|.+
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l-~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHH-hhcccchhhhhccccc
Confidence            3344555555555555431     21222 4455555555555533

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.10  E-value=0.14  Score=38.83  Aligned_cols=93  Identities=16%  Similarity=0.086  Sum_probs=55.1

Q ss_pred             CCCCCCCEEeecC-CCCc-----ccchhHHhcCcCCcEEeccCcCccccc-hhhhccccchhhhhCCCCCCeeeccCC--
Q 041418          157 ENLFLLRYLKLNI-PSLK-----SLSSSLLSNLLNLYTLDMPFSYIDHTV-DEFWKMKKLRHLNFGLSCLKSLKLANE--  227 (349)
Q Consensus       157 ~~l~~L~~L~l~~-~~l~-----~lp~~if~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~l~~L~~L~l~~~--  227 (349)
                      .+.+.|++|++++ +.++     .+-..+ ...++|+.|++++|.++.-. ..+...     | ...++++.+++.+.  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al-~~n~~L~~L~Ls~n~l~~~~~~~L~~~-----l-~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEM-----L-KVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHH-----H-HHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHH-hcCCccCeeeccCCcccHHHHHHHHHH-----H-hhcccchhhhhccccc
Confidence            4567899999987 4554     233333 67889999999999665421 111110     0 22345555555411  


Q ss_pred             ------------CCCCCccEEEEccC----------------CCCCCccEEEEeecC
Q 041418          228 ------------SKMPWLSKIVLAEY----------------LFPHSLTHLSFSNTD  256 (349)
Q Consensus       228 ------------~~~~~L~~L~l~~~----------------~~~~~L~~L~L~~~~  256 (349)
                                  ...++|+.+++..+                ...++|+.|++.++.
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                        44566776665432                456788888887664