Citrus Sinensis ID: 041429

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
MEGQTSQHGQIIEINVDVPERERSLGGNKICGEAPCGFADAATNSNDARERSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER
cccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccEEEEEccccEEEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEEcc
ccccccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccHEEHccEEEEEEEcccEEEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEcc
megqtsqhgqiieinvdvpererslggnkicgeapcgfadaatnsndARERSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWaagwesnprqsygFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLghdhghghghghdhhdhgmghrhgsrittdhheehprgehhdhcdeenpktghhhfldkhhrtgevlaeplvdkpkfgpeqkkqqninVRGAYLHVLGDSIQSIGVMIGGAiiwykpewKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVkiqpeanadLVLNNVIDYIRREYNIIHVTIQIER
megqtsqhgqiieinvdvpeRERSLGGNKICGEAPCGFADAATNSNDARERSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPlvdkpkfgpeqkkqqniNVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIqpeanadlVLNNVIDYIRREYNIIHVTIQIER
MEGQTSQHGQIIEINVDVPERERSLGGNKICGEAPCGFADAATNSNDARERSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLghdhghghghghdhhdhgmghrhgSRITTDHHEEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER
***********IEIN*************KICGEAPCGF******************KLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHG*********************************************************************************INVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQI**
*********************************************************LLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHD**********************************************************************************NINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER
********GQIIEINVDVPERERSLGGNKICGEAPCGFADAATN*********SMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDH*********************RITTD***********************HHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER
**********IIEINVDVP*******************************RSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHD*********************************************************************************QNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEGQTSQHGQIIEINVDVPERERSLGGNKICGEAPCGFADAATNSNDARERSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEEHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query408 2.2.26 [Sep-21-2011]
Q9LXS1393 Metal tolerance protein A no no 0.921 0.956 0.655 1e-137
Q688R1418 Metal tolerance protein 1 yes no 1.0 0.976 0.654 1e-132
Q9ZT63398 Metal tolerance protein 1 no no 0.441 0.452 0.75 3e-75
Q2HJ10371 Zinc transporter 2 OS=Mus yes no 0.789 0.867 0.363 1e-64
Q5I020375 Zinc transporter 8 OS=Xen N/A no 0.747 0.813 0.365 2e-62
Q9M271334 Metal tolerance protein A no no 0.379 0.464 0.720 3e-62
Q5XHB4374 Zinc transporter 8 OS=Xen no no 0.737 0.804 0.366 9e-61
Q08E25388 Zinc transporter 3 OS=Bos no no 0.769 0.809 0.344 6e-56
Q99726388 Zinc transporter 3 OS=Hom no no 0.742 0.780 0.344 8e-54
Q5R617388 Zinc transporter 3 OS=Pon no no 0.742 0.780 0.341 2e-53
>sp|Q9LXS1|MTPA2_ARATH Metal tolerance protein A2 OS=Arabidopsis thaliana GN=MTPA2 PE=2 SV=2 Back     alignment and function desciption
 Score =  487 bits (1253), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/409 (65%), Positives = 318/409 (77%), Gaps = 33/409 (8%)

Query: 1   MEGQTSQHGQIIEINVDVPERERSLGG-NKICGEAPCGFADAATNSNDARERSASMRKLL 59
           M+    +H  +++I  +V   E SL G  K CGEAPCGF+DA T+S +A+ER+ASMRKLL
Sbjct: 16  MKDHIHEHDHMVQICGEVSSGETSLVGIKKTCGEAPCGFSDAKTSSIEAQERAASMRKLL 75

Query: 60  TAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYG 119
            AV LC +F+ +EV GGIKANSLAILTDAAHLLSDVAAFAISLFSLWA+GW++NP+QSYG
Sbjct: 76  IAVLLCAIFIVVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWKANPQQSYG 135

Query: 120 FFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALV 179
           FFR+EILGALVS+Q+IWLLAGILVYEAIVRL N + EV G LMF V+A GL+VNI MA++
Sbjct: 136 FFRIEILGALVSIQMIWLLAGILVYEAIVRLNNGSGEVEGSLMFAVSAVGLLVNIAMAIL 195

Query: 180 LGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEEHPRGEHHDHCDEENPKTGHHHFLDK 239
           LGHDHGHGHGH HD+              T+H        HHD   +E+           
Sbjct: 196 LGHDHGHGHGHSHDNGHGHSHDHGHGIAATEH--------HHDSGHDESQ---------- 237

Query: 240 HHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEW 299
                  L++ L+       EQKKQ+N+N++GAYLHVLGDSIQS+GVMIGGAIIWYKPEW
Sbjct: 238 -------LSDVLI-------EQKKQRNVNIQGAYLHVLGDSIQSVGVMIGGAIIWYKPEW 283

Query: 300 KIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELH 359
           KI+DLICTL+FSVIVLGTT  MLRNILEVLMESTPREID T LEKG+ E+EEVVA+HELH
Sbjct: 284 KILDLICTLVFSVIVLGTTIGMLRNILEVLMESTPREIDPTMLEKGVCEIEEVVAVHELH 343

Query: 360 IWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER 408
           IWAITVGK+LLACHVKI+PEA AD+VL+ +IDYI+RE+NI HVTIQIER
Sbjct: 344 IWAITVGKLLLACHVKIRPEAEADMVLDKIIDYIKREHNISHVTIQIER 392
Involved in sequestration of excess zinc in the cytoplasm into vacuoles to maintain zinc homeostasis.
Arabidopsis thaliana (taxid: 3702)
>sp|Q688R1|MTP1_ORYSJ Metal tolerance protein 1 OS=Oryza sativa subsp. japonica GN=MTP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZT63|MTP1_ARATH Metal tolerance protein 1 OS=Arabidopsis thaliana GN=MTP1 PE=1 SV=2 Back     alignment and function description
>sp|Q2HJ10|ZNT2_MOUSE Zinc transporter 2 OS=Mus musculus GN=Slc30a2 PE=2 SV=1 Back     alignment and function description
>sp|Q5I020|ZNT8_XENLA Zinc transporter 8 OS=Xenopus laevis GN=slc30a8 PE=2 SV=1 Back     alignment and function description
>sp|Q9M271|MTPA1_ARATH Metal tolerance protein A1 OS=Arabidopsis thaliana GN=MTPA1 PE=2 SV=1 Back     alignment and function description
>sp|Q5XHB4|ZNT8_XENTR Zinc transporter 8 OS=Xenopus tropicalis GN=slc30a8 PE=2 SV=1 Back     alignment and function description
>sp|Q08E25|ZNT3_BOVIN Zinc transporter 3 OS=Bos taurus GN=SLC30A3 PE=2 SV=1 Back     alignment and function description
>sp|Q99726|ZNT3_HUMAN Zinc transporter 3 OS=Homo sapiens GN=SLC30A3 PE=2 SV=2 Back     alignment and function description
>sp|Q5R617|ZNT3_PONAB Zinc transporter 3 OS=Pongo abelii GN=SLC30A3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
38537139393 metal tolerance protein 1 [Populus trich 0.953 0.989 0.742 1e-167
295016059389 metal tolerance protein [Arabidopsis hal 0.941 0.987 0.701 1e-155
224128061368 metal tolerance protein [Populus trichoc 0.901 1.0 0.720 1e-155
225453628418 PREDICTED: metal tolerance protein 1-lik 0.977 0.954 0.709 1e-154
225426520418 PREDICTED: metal tolerance protein A2-li 0.960 0.937 0.683 1e-152
224064376393 metal tolerance protein [Populus trichoc 0.953 0.989 0.701 1e-152
255548055404 cation efflux protein/ zinc transporter, 0.965 0.975 0.760 1e-151
4206640398 zinc transporter ZAT [Arabidopsis thalia 0.953 0.977 0.681 1e-151
147841252422 hypothetical protein VITISV_023819 [Viti 0.963 0.931 0.678 1e-151
238684576408 zinc ion transmembrane transporter [Medi 0.963 0.963 0.709 1e-150
>gi|38537139|gb|AAR23528.1| metal tolerance protein 1 [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 306/412 (74%), Positives = 343/412 (83%), Gaps = 23/412 (5%)

Query: 1   MEGQTSQHGQIIEINVDVPERERSLGGNKICGEAPCGFADAATNSNDARERSASMRKLLT 60
           ME Q  QHG  +EI+VD+ + E S GG+K CGEAPCGF+D   NS +A+ERSASMRKL  
Sbjct: 1   MEAQNPQHGHPVEISVDILDGEMS-GGSKGCGEAPCGFSDTGNNSKNAKERSASMRKLWI 59

Query: 61  AVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGF 120
           +VALC+VFMS E+ GGI+ANSLAILTDAAHLLSDVA FAISLFSLWAAGWE+ PRQSYGF
Sbjct: 60  SVALCIVFMSAEIAGGIEANSLAILTDAAHLLSDVAGFAISLFSLWAAGWEATPRQSYGF 119

Query: 121 FRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVL 180
           FR+EILGALVSMQLIWLLAGILVYE I+RLI+ TSEVNGFLMFLVAAFGL+VNIIMALVL
Sbjct: 120 FRIEILGALVSMQLIWLLAGILVYETIIRLIHGTSEVNGFLMFLVAAFGLLVNIIMALVL 179

Query: 181 GHDHGHGHGHGHDHHDHGMGHRHGSRITT--DHHEEHPRGE--HHDHCDEENPKTGHHHF 236
           GHDHG  H      H HG GH HG+ ++T   HH EHP+ +  HHDH + E     HHH 
Sbjct: 180 GHDHGPDHD-----HKHGTGHSHGTTVSTHNHHHVEHPKHDDNHHDHSNNE-----HHHA 229

Query: 237 LDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYK 296
            + H        EPL+DK +    +KKQ+NINV+GAYLHVLGDSIQSIGVMIGGAIIWYK
Sbjct: 230 HEDH-------VEPLLDKGE-AMHEKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYK 281

Query: 297 PEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIH 356
           PEWKI+DLICTLIFSVIVLGTT  MLRNILEVLMESTPREIDATK+EKG+LEMEEV+AIH
Sbjct: 282 PEWKIIDLICTLIFSVIVLGTTIKMLRNILEVLMESTPREIDATKIEKGLLEMEEVMAIH 341

Query: 357 ELHIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER 408
           ELHIWAITVGK+LLACHVKI PEANAD+VL+NVI Y+RREYNI HVTIQIER
Sbjct: 342 ELHIWAITVGKILLACHVKIMPEANADMVLDNVISYLRREYNISHVTIQIER 393

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|295016059|emb|CAY39366.1| metal tolerance protein [Arabidopsis halleri subsp. halleri] Back     alignment and taxonomy information
>gi|224128061|ref|XP_002320234.1| metal tolerance protein [Populus trichocarpa] gi|222861007|gb|EEE98549.1| metal tolerance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453628|ref|XP_002266346.1| PREDICTED: metal tolerance protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225426520|ref|XP_002278303.1| PREDICTED: metal tolerance protein A2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224064376|ref|XP_002301445.1| metal tolerance protein [Populus trichocarpa] gi|222843171|gb|EEE80718.1| metal tolerance protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255548055|ref|XP_002515084.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] gi|223545564|gb|EEF47068.1| cation efflux protein/ zinc transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|4206640|gb|AAD11757.1| zinc transporter ZAT [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|147841252|emb|CAN64515.1| hypothetical protein VITISV_023819 [Vitis vinifera] Back     alignment and taxonomy information
>gi|238684576|gb|ACR54455.1| zinc ion transmembrane transporter [Medicago sativa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query408
TAIR|locus:2044382398 ZAT "AT2G46800" [Arabidopsis t 0.970 0.994 0.697 9.3e-146
TAIR|locus:2099079432 MTPA2 "AT3G58810" [Arabidopsis 0.458 0.432 0.691 6.8e-132
TAIR|locus:2079497334 MTPA1 "AT3G61940" [Arabidopsis 0.433 0.529 0.670 6.5e-120
TAIR|locus:2043117375 MTPB1 "AT2G29410" [Arabidopsis 0.463 0.504 0.435 5.8e-82
DICTYBASE|DDB_G0283629543 DDB_G0283629 "cation diffusion 0.370 0.278 0.496 8.7e-67
MGI|MGI:106637371 Slc30a2 "solute carrier family 0.365 0.401 0.449 4.2e-65
RGD|3707359 Slc30a2 "solute carrier family 0.357 0.406 0.452 1.8e-64
UNIPROTKB|I3LTT3348 SLC30A2 "Uncharacterized prote 0.352 0.413 0.444 6.2e-64
WB|WBGene00011821360 cdf-2 [Caenorhabditis elegans 0.348 0.394 0.422 9.9e-62
ZFIN|ZDB-GENE-060315-10388 slc30a8 "solute carrier family 0.426 0.448 0.4 1.6e-61
TAIR|locus:2044382 ZAT "AT2G46800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1424 (506.3 bits), Expect = 9.3e-146, P = 9.3e-146
 Identities = 286/410 (69%), Positives = 323/410 (78%)

Query:     1 MEGQTSQHGQIIEINVDVPERERSLGGNKICGEAPCGFADAATNSNDARERSASMRKLLT 60
             ME  +  H  I+E+NV   + ER +  +K+CGEAPCGF+D+   S DA ERSASMRKL  
Sbjct:     1 MESSSPHHSHIVEVNVGKSDEERIIVASKVCGEAPCGFSDSKNASGDAHERSASMRKLCI 60

Query:    61 AVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGF 120
             AV LC+VFMS+EV GGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWE+ PRQ+YGF
Sbjct:    61 AVVLCLVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQTYGF 120

Query:   121 FRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVL 180
             FR+EILGALVS+QLIWLL GILVYEAI+R++ ETSEVNGFLMFLVAAFGLVVNIIMA++L
Sbjct:   121 FRIEILGALVSIQLIWLLTGILVYEAIIRIVTETSEVNGFLMFLVAAFGLVVNIIMAVLL 180

Query:   181 XXXXXXXXXXXXXXXXXXXXXXXXSRITTDHHEEHPRGEHHDHCDEENPKTGHHHFLDKH 240
                                       +TT HH       HHDH  E     GH    DKH
Sbjct:   181 GHDHGHSHGHGHGHGHDHHNHSHGVTVTTHHH-------HHDH--EHGHSHGHGE--DKH 229

Query:   241 HRTGEVLAEPLVDKPK--FGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPE 298
             H  G+V  E L+DK K     ++K+++NIN++GAYLHVLGDSIQS+GVMIGGAIIWY PE
Sbjct:   230 HAHGDV-TEQLLDKSKTQVAAKEKRKRNINLQGAYLHVLGDSIQSVGVMIGGAIIWYNPE 288

Query:   299 WKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHEL 358
             WKIVDLICTL FSVIVLGTT NM+RNILEVLMESTPREIDATKLEKG+LEMEEVVA+HEL
Sbjct:   289 WKIVDLICTLAFSVIVLGTTINMIRNILEVLMESTPREIDATKLEKGLLEMEEVVAVHEL 348

Query:   359 HIWAITVGKVLLACHVKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER 408
             HIWAITVGKVLLACHV I+PEA+AD+VLN VIDYIRREYNI HVTIQIER
Sbjct:   349 HIWAITVGKVLLACHVNIRPEADADMVLNKVIDYIRREYNISHVTIQIER 398
GO:0005385 "zinc ion transmembrane transporter activity" evidence=ISS;IDA;IMP
GO:0006812 "cation transport" evidence=IEA
GO:0006829 "zinc ion transport" evidence=ISS;IDA
GO:0008324 "cation transmembrane transporter activity" evidence=IEA
GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0010038 "response to metal ion" evidence=IMP
GO:0006882 "cellular zinc ion homeostasis" evidence=NAS;TAS
GO:0046873 "metal ion transmembrane transporter activity" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0009062 "fatty acid catabolic process" evidence=RCA
TAIR|locus:2099079 MTPA2 "AT3G58810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079497 MTPA1 "AT3G61940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043117 MTPB1 "AT2G29410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283629 DDB_G0283629 "cation diffusion facilitator (CDF) family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:106637 Slc30a2 "solute carrier family 30 (zinc transporter), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3707 Slc30a2 "solute carrier family 30 (zinc transporter), member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTT3 SLC30A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
WB|WBGene00011821 cdf-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060315-10 slc30a8 "solute carrier family 30 (zinc transporter), member 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q688R1MTP1_ORYSJNo assigned EC number0.65461.00.9760yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
TIGR01297268 TIGR01297, CDF, cation diffusion facilitator famil 1e-39
TIGR01297268 TIGR01297, CDF, cation diffusion facilitator famil 3e-37
COG1230296 COG1230, CzcD, Co/Zn/Cd efflux system component [I 2e-32
COG1230296 COG1230, CzcD, Co/Zn/Cd efflux system component [I 4e-32
pfam01545273 pfam01545, Cation_efflux, Cation efflux family 1e-22
PRK03557312 PRK03557, PRK03557, zinc transporter ZitB; Provisi 4e-22
pfam01545273 pfam01545, Cation_efflux, Cation efflux family 8e-20
PRK03557312 PRK03557, PRK03557, zinc transporter ZitB; Provisi 2e-17
COG0053304 COG0053, MMT1, Predicted Co/Zn/Cd cation transport 8e-15
COG0053304 COG0053, MMT1, Predicted Co/Zn/Cd cation transport 2e-06
pfam02535314 pfam02535, Zip, ZIP Zinc transporter 4e-06
PRK13263206 PRK13263, ureE, urease accessory protein UreE; Pro 1e-04
pfam04592238 pfam04592, SelP_N, Selenoprotein P, N terminal reg 0.001
COG4531318 COG4531, ZnuA, ABC-type Zn2+ transport system, per 0.001
PRK09545311 PRK09545, znuA, high-affinity zinc transporter per 0.004
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter Back     alignment and domain information 
 Score =  141 bits (359), Expect = 1e-39
 Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 6/150 (4%)

Query: 262 KKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLGTTFNM 321
            +  ++ +R A LHVL D++ S+GV+IG  +I++   W   D I  L+ S+++L T F +
Sbjct: 119 HRLGSLALRAAALHVLSDALSSVGVLIGALLIYFG--WHWADPIAALLISLLILYTAFRL 176

Query: 322 LRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHVKIQPEAN 381
           L+  + VL+++ P E D  +++K IL +  V  +H+LHIW I  GK+ L  HV + P+ +
Sbjct: 177 LKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLD 236

Query: 382 A----DLVLNNVIDYIRREYNIIHVTIQIE 407
                D+ L    + ++R   I HVTIQ+E
Sbjct: 237 LKQAHDIALEIEREILKRHPGIEHVTIQVE 266

This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence [Transport and binding proteins, Cations and iron carrying compounds]. Length = 268
>gnl|CDD|233348 TIGR01297, CDF, cation diffusion facilitator family transporter Back     alignment and domain information
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|224151 COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family Back     alignment and domain information
>gnl|CDD|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional Back     alignment and domain information
>gnl|CDD|216561 pfam01545, Cation_efflux, Cation efflux family Back     alignment and domain information
>gnl|CDD|235130 PRK03557, PRK03557, zinc transporter ZitB; Provisional Back     alignment and domain information
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|217089 pfam02535, Zip, ZIP Zinc transporter Back     alignment and domain information
>gnl|CDD|237323 PRK13263, ureE, urease accessory protein UreE; Provisional Back     alignment and domain information
>gnl|CDD|218163 pfam04592, SelP_N, Selenoprotein P, N terminal region Back     alignment and domain information
>gnl|CDD|226908 COG4531, ZnuA, ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic component; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 408
COG1230296 CzcD Co/Zn/Cd efflux system component [Inorganic i 100.0
KOG1482379 consensus Zn2+ transporter [Inorganic ion transpor 100.0
PRK03557312 zinc transporter ZitB; Provisional 100.0
KOG1484354 consensus Putative Zn2+ transporter MSC2 (cation d 100.0
KOG1483404 consensus Zn2+ transporter ZNT1 and related Cd2+/Z 100.0
PRK09509299 fieF ferrous iron efflux protein F; Reviewed 100.0
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 100.0
TIGR01297268 CDF cation diffusion facilitator family transporte 100.0
PF01545284 Cation_efflux: Cation efflux family; InterPro: IPR 100.0
KOG1485412 consensus Mitochondrial Fe2+ transporter MMT1 and 100.0
COG3965314 Predicted Co/Zn/Cd cation transporters [Inorganic 99.94
KOG2802503 consensus Membrane protein HUEL (cation efflux sup 99.79
COG0053304 MMT1 Predicted Co/Zn/Cd cation transporters [Inorg 98.09
TIGR01297268 CDF cation diffusion facilitator family transporte 97.88
PRK09509299 fieF ferrous iron efflux protein F; Reviewed 97.86
PRK03557312 zinc transporter ZitB; Provisional 97.03
KOG1485412 consensus Mitochondrial Fe2+ transporter MMT1 and 95.47
PF02535317 Zip: ZIP Zinc transporter; InterPro: IPR003689 The 92.31
PF01545284 Cation_efflux: Cation efflux family; InterPro: IPR 91.45
COG1230 296 CzcD Co/Zn/Cd efflux system component [Inorganic i 90.69
PF1453596 AMP-binding_C_2: AMP-binding enzyme C-terminal dom 84.58
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-56  Score=427.59  Aligned_cols=274  Identities=37%  Similarity=0.672  Sum_probs=260.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHH
Q 041429           54 SMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQ  133 (408)
Q Consensus        54 ~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~  133 (408)
                      .+|++++++++|.+||++|+++|+++||+||+||+.||+.|+++.+++++|.++++||++++|||||.|+|.|++|++++
T Consensus        20 ~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav   99 (296)
T COG1230          20 NERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNAL   99 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 041429          134 LIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHE  213 (408)
Q Consensus       134 ~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                      +|+.+++++++||++||++|.+. +...|++++++|+++|+++++.+.++                              
T Consensus       100 ~Li~~s~~I~~EAi~R~~~P~~i-~~~~ml~va~~GL~vN~~~a~ll~~~------------------------------  148 (296)
T COG1230         100 LLIVVSLLILWEAIQRLLAPPPI-HYSGMLVVAIIGLVVNLVSALLLHKG------------------------------  148 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCC-CccchHHHHHHHHHHHHHHHHHhhCC------------------------------
Confidence            99999999999999999997644 45889999999999999999999741                              


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429          214 EHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAII  293 (408)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~  293 (408)
                                                                       +.+|.|+|++++|+++|+++|++++++++++
T Consensus       149 -------------------------------------------------~~~~lN~r~a~LHvl~D~Lgsv~vIia~i~i  179 (296)
T COG1230         149 -------------------------------------------------HEENLNMRGAYLHVLGDALGSVGVIIAAIVI  179 (296)
T ss_pred             -------------------------------------------------CcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                             1368899999999999999999999999999


Q ss_pred             HhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEE
Q 041429          294 WYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACH  373 (408)
Q Consensus       294 ~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~  373 (408)
                      +++ +|+|+||+++++++++++..+++++|++..+|++..|+..+.+++++.+.+.|||.+++++|+|+++++...+++|
T Consensus       180 ~~~-~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~~~~~~t~H  258 (296)
T COG1230         180 RFT-GWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITGGEHALTLH  258 (296)
T ss_pred             HHh-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCCCceeEEEE
Confidence            886 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429          374 VKIQPEANADLVLNNVIDYIRREYNIIHVTIQIER  408 (408)
Q Consensus       374 v~v~~~~~~~~i~~~i~~~l~~~~~v~~vtIqie~  408 (408)
                      +++++..+.+.+++++++++.++|++.|+|||+|+
T Consensus       259 v~v~~~~~~~~~~~~~~~~l~~~~~I~hvTiQ~e~  293 (296)
T COG1230         259 VVVDEVADADAALDQIVRRLLEKYGIEHVTIQLET  293 (296)
T ss_pred             EEecCccchHHHHHHHHHHHhhhcCcceEEEEecC
Confidence            99996677777999999999999999999999996

>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK03557 zinc transporter ZitB; Provisional Back     alignment and domain information
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09509 fieF ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01297 CDF cation diffusion facilitator family transporter Back     alignment and domain information
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt Back     alignment and domain information
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only] Back     alignment and domain information
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01297 CDF cation diffusion facilitator family transporter Back     alignment and domain information
>PRK09509 fieF ferrous iron efflux protein F; Reviewed Back     alignment and domain information
>PRK03557 zinc transporter ZitB; Provisional Back     alignment and domain information
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [] Back     alignment and domain information
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt Back     alignment and domain information
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query408
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 4e-12
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 3e-07
1pq4_A291 Periplasmic binding protein component of AN ABC T 1e-04
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283 Back     alignment and structure
 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 51  RSASMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGW 110
             A++     A  L +    I++F      S++IL      L D+ A   +L  +  +  
Sbjct: 3   SRAAIAATAMASLLLL----IKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQ 58

Query: 111 ESNPRQSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGL 170
            ++   S+G  + E L AL     I   A  L    I  LI+ T   +  +  +V    L
Sbjct: 59  PADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVAL 118

Query: 171 VVNIIMALVL 180
           +  II+    
Sbjct: 119 ICTIILVSFQ 128
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Length = 283 Back     alignment and structure
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A Length = 291 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 100.0
3j1z_P306 YIIP, cation efflux family protein; zinc transport 100.0
3byp_A94 CZRB protein; membrane protein, zinc transporter, 99.33
2zzt_A107 Putative uncharacterized protein; cation diffusion 99.21
3j1z_P306 YIIP, cation efflux family protein; zinc transport 96.97
3h90_A283 Ferrous-iron efflux pump FIEF; membrane protein, z 96.91
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Back     alignment and structure
Probab=100.00  E-value=6.3e-53  Score=408.36  Aligned_cols=274  Identities=20%  Similarity=0.272  Sum_probs=258.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHHH
Q 041429           55 MRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQL  134 (408)
Q Consensus        55 ~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~~  134 (408)
                      +|.+++++++|++++++|+++|+++||+||++||+||+.|+++.++++++.++++||||++|||||+|+|++++++++++
T Consensus         3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~   82 (283)
T 3h90_A            3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF   82 (283)
T ss_dssp             CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q 041429          135 IWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHEE  214 (408)
Q Consensus       135 L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (408)
                      |++++++++++|++++++|.+...+.++++++++++++|+++++++++                                
T Consensus        83 l~~~~~~i~~eai~~l~~~~~~~~~~~~l~v~~~s~~v~~~~~~~~~~--------------------------------  130 (283)
T 3h90_A           83 ISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRW--------------------------------  130 (283)
T ss_dssp             HHHHHHHHHHHHHHTSSSSCCCCCCCCCTHHHHHHHHHHHHHHHHHHH--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH--------------------------------
Confidence            999999999999999999887777777899999999999999998875                                


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429          215 HPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAIIW  294 (408)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~~  294 (408)
                                                                   ..++.+|++++++++|++.|+++|++++++.++.+
T Consensus       131 ---------------------------------------------~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~~  165 (283)
T 3h90_A          131 ---------------------------------------------VVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSW  165 (283)
T ss_dssp             ---------------------------------------------HHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSCS
T ss_pred             ---------------------------------------------HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                         45667899999999999999999999999877743


Q ss_pred             hccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhccCCCcccHHHHHHHHHcCcCccceeeeEEEEeeCCeEEEEEEE
Q 041429          295 YKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMESTPREIDATKLEKGILEMEEVVAIHELHIWAITVGKVLLACHV  374 (408)
Q Consensus       295 ~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~~p~~~~~~~i~~~l~~~~gV~~v~~l~~~~~~~~~~~~~v~v  374 (408)
                      +  +|+|+||+++++++++|++.+++++|++...|+|++|++++.+++++.+++.|||.+++++|+|+. +.++.+++||
T Consensus       166 ~--g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~l~~~~~-G~~~~v~~hv  242 (283)
T 3h90_A          166 Y--GWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQS-GPTRFIQIHL  242 (283)
T ss_dssp             T--TSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEEEEEEEE-TTEEEEEEEE
T ss_pred             h--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCcccceeeEEEEE-CCcEEEEEEE
Confidence            3  899999999999999999999999999999999999999999999999999999999999999987 4678899999


Q ss_pred             EeCCCC---CHHHHHHHHHHHHHhhCCCceEEEEecC
Q 041429          375 KIQPEA---NADLVLNNVIDYIRREYNIIHVTIQIER  408 (408)
Q Consensus       375 ~v~~~~---~~~~i~~~i~~~l~~~~~v~~vtIqie~  408 (408)
                      .++++.   +.+++.++++++++++++..++|||+||
T Consensus       243 ~v~~~~~~~~~~~i~~~i~~~l~~~~~~~~v~ih~ep  279 (283)
T 3h90_A          243 EMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQDP  279 (283)
T ss_dssp             ECCTTCBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecc
Confidence            999984   7899999999999999988999999997
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis} Back     alignment and structure
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A Back     alignment and structure
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima} Back     alignment and structure
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis} Back     alignment and structure
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 408
d2qfia2204 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF { 9e-19
d2qfia2204 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF { 4e-07
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

 Score = 81.7 bits (201), Expect = 9e-19
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 1/141 (0%)

Query: 56  RKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPR 115
           R  + A A+  + + I++F      S++IL      L D+ A   +L  +  +   ++  
Sbjct: 7   RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDN 66

Query: 116 QSYGFFRVEILGALVSMQLIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNII 175
            S+G  + E L AL     I   A  L    I  LI+ T   +  +  +V    L+  II
Sbjct: 67  HSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTII 126

Query: 176 MALVLGHDHGHGHGHGHDHHD 196
           +                   D
Sbjct: 127 LVSFQRW-VVRRTQSQAVRAD 146
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Length = 204 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query408
d2qfia2204 Ferrous-iron efflux pump FieF {Escherichia coli [T 99.97
d2qfia182 Ferrous-iron efflux pump FieF (YiiP) {Escherichia 98.96
d3bypa182 Putative Zinc transporter CzrB {Thermus thermophil 98.91
d2qfia2204 Ferrous-iron efflux pump FieF {Escherichia coli [T 81.41
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Cation efflux protein transmembrane domain-like
superfamily: Cation efflux protein transmembrane domain-like
family: Cation efflux protein transmembrane domain-like
domain: Ferrous-iron efflux pump FieF
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=8.4e-38  Score=286.16  Aligned_cols=200  Identities=22%  Similarity=0.304  Sum_probs=184.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhccchHHHHHhhHHHHHhHHHHHHHHHHHHHhcCCCCCCCccCchhHHHHHHHHHHH
Q 041429           54 SMRKLLTAVALCVVFMSIEVFGGIKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWESNPRQSYGFFRVEILGALVSMQ  133 (408)
Q Consensus        54 ~~~~l~~~l~~~~~~~~~~~~~g~~s~S~aLlaDa~hsl~D~~s~~~~l~a~~~s~~~~~~~~p~G~~R~E~l~~l~~~~  133 (408)
                      .+|.+++++++|++++++|+++|+++||++|++|++|++.|+++.++.+++.+.++||||++|||||+|+|+++++++++
T Consensus         5 ~~r~~~~~~~~n~~l~i~~~~~~~~t~S~allada~~s~~D~~~~~~~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~   84 (204)
T d2qfia2           5 VSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSM   84 (204)
T ss_dssp             SSTTSHHHHGGGTTTTTBTTBCCCCTTSSCCCCCCCTTHHHHHHHHHHHHHHTTSSSSCSTTSSCSCCTHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccCCcchhHHHHHHHHHHHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCcccchhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 041429          134 LIWLLAGILVYEAIVRLINETSEVNGFLMFLVAAFGLVVNIIMALVLGHDHGHGHGHGHDHHDHGMGHRHGSRITTDHHE  213 (408)
Q Consensus       134 ~L~~~~~~i~~ea~~~l~~~~~~~~~~~~~~~~~~~l~vn~i~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (408)
                      +++++++++++++++++++|++..++.+++++++++++++.+++.+.++                               
T Consensus        85 ~l~~~~~~~~~~si~~l~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~~-------------------------------  133 (204)
T d2qfia2          85 FISGSALFLFLTGIQHLISPTPMTDPGVGVIVTIVALICTIILVSFQRW-------------------------------  133 (204)
T ss_dssp             TTSSSTTGGGSSCTTSSTTTSSSSTTTSCCCCCGGGSSCGGGGTTTHHH-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Confidence            9999999999999999999988878888888888888888877766653                               


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccCccccCCccccCCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041429          214 EHPRGEHHDHCDEENPKTGHHHFLDKHHRTGEVLAEPLVDKPKFGPEQKKQQNINVRGAYLHVLGDSIQSIGVMIGGAII  293 (408)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~sv~vli~~~~~  293 (408)
                                                                    ..++.+|+++++++.|++.|+++|++++++.++.
T Consensus       134 ----------------------------------------------~~~~~~s~~~~a~~~~~~~D~~~s~~vii~~~~~  167 (204)
T d2qfia2         134 ----------------------------------------------VVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS  167 (204)
T ss_dssp             ----------------------------------------------HGGGCCSTTSGGGGGGHHHHTCCSSTTCCCTTSS
T ss_pred             ----------------------------------------------hhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                          4566788999999999999999999999886665


Q ss_pred             HhccCchhhhHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Q 041429          294 WYKPEWKIVDLICTLIFSVIVLGTTFNMLRNILEVLMES  332 (408)
Q Consensus       294 ~~~~~~~~~Dpv~si~is~~il~~~~~l~~~s~~~Ll~~  332 (408)
                      ++  +|+|+||++++++++++++.+++++|++.+.|+|+
T Consensus       168 ~~--~~~~~D~i~aiii~~~i~~~~~~~~~~~~~~Lld~  204 (204)
T d2qfia2         168 WY--GWHRADALFALGIGIYILYSALRMGYEAVQSLLDR  204 (204)
T ss_dssp             CS--STTSSSSSSHHHHTTTTTTTTTTHHHHTGGGSSCC
T ss_pred             Hh--CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            44  89999999999999999999999999999999986
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure