Citrus Sinensis ID: 041517
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 327 | ||||||
| 224068104 | 311 | predicted protein [Populus trichocarpa] | 0.874 | 0.919 | 0.689 | 1e-118 | |
| 255578202 | 311 | conserved hypothetical protein [Ricinus | 0.865 | 0.909 | 0.697 | 1e-117 | |
| 297848406 | 315 | predicted protein [Arabidopsis lyrata su | 0.932 | 0.968 | 0.633 | 1e-113 | |
| 6715637 | 478 | T25K16.17 [Arabidopsis thaliana] | 0.914 | 0.625 | 0.631 | 1e-112 | |
| 334182209 | 307 | S-adenosyl-L-methionine-dependent methyl | 0.914 | 0.973 | 0.631 | 1e-111 | |
| 225453586 | 311 | PREDICTED: uncharacterized protein LOC10 | 0.779 | 0.819 | 0.699 | 1e-105 | |
| 147812549 | 293 | hypothetical protein VITISV_028697 [Viti | 0.779 | 0.870 | 0.695 | 1e-103 | |
| 449519752 | 323 | PREDICTED: uncharacterized LOC101217115 | 0.868 | 0.879 | 0.596 | 1e-102 | |
| 449445716 | 323 | PREDICTED: uncharacterized protein LOC10 | 0.868 | 0.879 | 0.593 | 1e-100 | |
| 356520237 | 312 | PREDICTED: uncharacterized protein LOC10 | 0.718 | 0.753 | 0.717 | 5e-99 |
| >gi|224068104|ref|XP_002302665.1| predicted protein [Populus trichocarpa] gi|222844391|gb|EEE81938.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/303 (68%), Positives = 240/303 (79%), Gaps = 17/303 (5%)
Query: 21 KLFNNPTAYIILLLLSYALGYLSSPKPHTPPPPPPSRPRAGAGAGAATATATATSNSTIQ 80
+L N+P Y+ILLLLSYALGYLS+P +PP P PS G T
Sbjct: 25 RLLNSPAVYVILLLLSYALGYLSAPSSRSPPQPLPSPEILKVGDNLNTQ----------- 73
Query: 81 LPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGW 140
LDNFRV T CA +PPQLV QTI+DR+FN TSPY NFPP ++S LLR ++ KGW
Sbjct: 74 -----LDNFRVKTHCAK-PLPPQLVHQTILDRVFNSTSPYDNFPPAYVSGLLREKKFKGW 127
Query: 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200
GSYG VF +LI KV+P+VIIEVG+FLGASALHMA LTR+LGLDSQILCIDDFRGWPGFRD
Sbjct: 128 GSYGEVFEHLIQKVKPKVIIEVGTFLGASALHMAELTRKLGLDSQILCIDDFRGWPGFRD 187
Query: 201 KFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG 260
+F + M+N +VLL +QF+QNVI++NA SVLP+PFSSGSAL KLCEWGV GDLIEIDAG
Sbjct: 188 RFGYVNMINSDVLLLYQFMQNVIHKNATGSVLPMPFSSGSALEKLCEWGVFGDLIEIDAG 247
Query: 261 HDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWV 320
HDFNSAWADINRA+RILRPGG+IFGHDYFTAADNRGVRRAVNLFA++NGLK+ DGQHWV
Sbjct: 248 HDFNSAWADINRAYRILRPGGIIFGHDYFTAADNRGVRRAVNLFAQMNGLKIHTDGQHWV 307
Query: 321 IHS 323
I S
Sbjct: 308 IDS 310
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578202|ref|XP_002529969.1| conserved hypothetical protein [Ricinus communis] gi|223530531|gb|EEF32412.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/304 (69%), Positives = 249/304 (81%), Gaps = 21/304 (6%)
Query: 21 KLFNNPTAYIILLLLSYALGYLSSPKPHTPPPPPPSRPRAGAGAGAATATATATSNSTIQ 80
K+ +P AYI LLLLSYALGY S+P P + ++ + TA +
Sbjct: 24 KILYSPAAYISLLLLSYALGYFSAPSSRLP-----------PPSSSSLSPPTAATQ---- 68
Query: 81 LPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGW 140
LDNFRVTT CA +S+P +LVR+TI+DRI+N TSPY++FPPPH+S LLR +++KGW
Sbjct: 69 -----LDNFRVTTLCA-NSLPSKLVRRTILDRIYNATSPYLDFPPPHVSGLLRSKKLKGW 122
Query: 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200
GSYGAVF NLI KV+P+VIIEVG+FLGAS+LHMA LTRQLGL++QILCIDDFRGWPGFRD
Sbjct: 123 GSYGAVFANLIQKVKPKVIIEVGTFLGASSLHMAELTRQLGLETQILCIDDFRGWPGFRD 182
Query: 201 KFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG 260
KFK + MV+G+VLL +QF+QNVIY NA +SVLPVPFSSGSAL KLCEWG+ GDLIEIDAG
Sbjct: 183 KFKYVNMVSGDVLLLYQFMQNVIYMNATESVLPVPFSSGSALEKLCEWGIFGDLIEIDAG 242
Query: 261 HDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWV 320
HDFNSAWADINRA+RILRPGGVIFGHDYFTAADNRGVRRAVNLFA+INGL++Q DGQHWV
Sbjct: 243 HDFNSAWADINRAYRILRPGGVIFGHDYFTAADNRGVRRAVNLFAQINGLQIQTDGQHWV 302
Query: 321 IHSA 324
I SA
Sbjct: 303 IDSA 306
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848406|ref|XP_002892084.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297337926|gb|EFH68343.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/322 (63%), Positives = 243/322 (75%), Gaps = 17/322 (5%)
Query: 4 KEDHHRFHHKVNMYITKKLFNNPTAYIILLLLSYALGYLSSPKPHTPPPPPPSRPRAGAG 63
KED R HK + + + TAY+I ++L+YA GY S+ H P
Sbjct: 2 KEDR-RLPHKRDAF---QFLKTKTAYVIFIVLTYAFGYFSAYYSHQP-----------LQ 46
Query: 64 AGAATATATATSNSTIQLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNF 123
+ A TI+ +DNFRVTTRC + VPP+L+RQT+IDRIFNGTSPY +F
Sbjct: 47 QQQPPSPAAVRDVKTIKPQVCSIDNFRVTTRCG-NLVPPELIRQTVIDRIFNGTSPYTDF 105
Query: 124 PPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLD 183
PPPH LR +RIKGWGSYGAVF NLI +V+PR I+E+GSFLGASA+HMANLTR+LGL+
Sbjct: 106 PPPHAEKFLRPKRIKGWGSYGAVFENLIRRVKPRTIVEIGSFLGASAIHMANLTRRLGLE 165
Query: 184 -SQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSAL 242
+QILC+DDFRGWPGFRD+FK++ +VNG+VLL +QF+QNV+ N S+LPVPFS+GSAL
Sbjct: 166 ETQILCVDDFRGWPGFRDRFKDVALVNGDVLLMYQFMQNVVSSNVSGSILPVPFSTGSAL 225
Query: 243 TKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302
KLCEWGV DL+EIDAGHDFNSAWADINRA RILRPGGVIFGHDYFTAADNRGVRRAVN
Sbjct: 226 EKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVN 285
Query: 303 LFAKINGLKVQIDGQHWVIHSA 324
LFA+IN LKV+ DGQHWVI S
Sbjct: 286 LFAEINRLKVKTDGQHWVIDSV 307
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6715637|gb|AAF26464.1|AC007323_5 T25K16.17 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/323 (63%), Positives = 246/323 (76%), Gaps = 24/323 (7%)
Query: 4 KEDHHRFHHKVNMYITKKLFNNPTAYIILLLLSYALGYLSSPKPHTPPPP--PPSRPRAG 61
KED R HK + + + AY+I+++L+YA GY S+ H P PPS
Sbjct: 2 KEDR-RLPHKRDAF---QFLKTKAAYVIVIVLTYAFGYFSAYHYHQPLQQQLPPS----- 52
Query: 62 AGAGAATATATATSNSTIQLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYV 121
TA T+ + +DNFRVTT C + VPP+L+RQT+IDRIFNGTSPY+
Sbjct: 53 -------TTAVETTKPQV----CSIDNFRVTTPCG-NLVPPELIRQTVIDRIFNGTSPYI 100
Query: 122 NFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLG 181
+FPPPH LR +RIKGWGSYGAVF NLI +V+P+ I+EVGSFLGASA+HMANLTR+LG
Sbjct: 101 DFPPPHAKKFLRPKRIKGWGSYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLG 160
Query: 182 LD-SQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGS 240
L+ +QILC+DDFRGWPGFRD+FK++ +VNG+VLL +QF+QNV+ + S+LPVPFS+GS
Sbjct: 161 LEETQILCVDDFRGWPGFRDRFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGS 220
Query: 241 ALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRA 300
AL KLCEWGV DL+EIDAGHDFNSAWADINRA RILRPGGVIFGHDYFTAADNRGVRRA
Sbjct: 221 ALEKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRA 280
Query: 301 VNLFAKINGLKVQIDGQHWVIHS 323
VNLFA+IN LKV+ DGQHWVI S
Sbjct: 281 VNLFAEINRLKVKTDGQHWVIDS 303
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182209|ref|NP_171626.2| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332189130|gb|AEE27251.1| S-adenosyl-L-methionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/323 (63%), Positives = 246/323 (76%), Gaps = 24/323 (7%)
Query: 4 KEDHHRFHHKVNMYITKKLFNNPTAYIILLLLSYALGYLSSPKPHTPPPP--PPSRPRAG 61
KED R HK + + + AY+I+++L+YA GY S+ H P PPS
Sbjct: 2 KEDR-RLPHKRDAF---QFLKTKAAYVIVIVLTYAFGYFSAYHYHQPLQQQLPPS----- 52
Query: 62 AGAGAATATATATSNSTIQLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYV 121
TA T+ + +DNFRVTT C + VPP+L+RQT+IDRIFNGTSPY+
Sbjct: 53 -------TTAVETTKPQV----CSIDNFRVTTPCG-NLVPPELIRQTVIDRIFNGTSPYI 100
Query: 122 NFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLG 181
+FPPPH LR +RIKGWGSYGAVF NLI +V+P+ I+EVGSFLGASA+HMANLTR+LG
Sbjct: 101 DFPPPHAKKFLRPKRIKGWGSYGAVFENLIRRVKPKTIVEVGSFLGASAIHMANLTRRLG 160
Query: 182 LD-SQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGS 240
L+ +QILC+DDFRGWPGFRD+FK++ +VNG+VLL +QF+QNV+ + S+LPVPFS+GS
Sbjct: 161 LEETQILCVDDFRGWPGFRDRFKDMALVNGDVLLMYQFMQNVVISDFSGSILPVPFSTGS 220
Query: 241 ALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRA 300
AL KLCEWGV DL+EIDAGHDFNSAWADINRA RILRPGGVIFGHDYFTAADNRGVRRA
Sbjct: 221 ALEKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRA 280
Query: 301 VNLFAKINGLKVQIDGQHWVIHS 323
VNLFA+IN LKV+ DGQHWVI S
Sbjct: 281 VNLFAEINRLKVKTDGQHWVIDS 303
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225453586|ref|XP_002266943.1| PREDICTED: uncharacterized protein LOC100242029 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/256 (69%), Positives = 217/256 (84%), Gaps = 1/256 (0%)
Query: 69 ATATATSNSTIQLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHI 128
TA+ + + L S L +F VT RC D VP +LVRQTI+DR+FNGTSP+ +FPPPH+
Sbjct: 57 GTASIPTTAGAALAESDLGHFGVTRRCG-DPVPSKLVRQTILDRVFNGTSPFDSFPPPHV 115
Query: 129 SHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILC 188
HLLR +RIKGWGS GAVF NLI +V+PR IIEVGSFLGASA+HMA + QLGL +QI+C
Sbjct: 116 VHLLRPKRIKGWGSNGAVFENLIRRVKPRTIIEVGSFLGASAIHMAEVASQLGLKTQIIC 175
Query: 189 IDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW 248
+DDFRGWPGFRD+FK+I M+NG+V+L +QF+QN+I+ NA DSVLPVPFS+ S L KLCE
Sbjct: 176 LDDFRGWPGFRDRFKDIAMINGDVMLLYQFMQNIIHVNATDSVLPVPFSTASTLDKLCEL 235
Query: 249 GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308
GV+GDLIE+DAGHDFNSAW+DINRA+RILRPGGVIFGHDYFT+ DN+GVRRAVNLFA++N
Sbjct: 236 GVLGDLIEVDAGHDFNSAWSDINRAYRILRPGGVIFGHDYFTSVDNKGVRRAVNLFARLN 295
Query: 309 GLKVQIDGQHWVIHSA 324
L+VQ+DGQHWVI SA
Sbjct: 296 KLRVQLDGQHWVIDSA 311
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147812549|emb|CAN77331.1| hypothetical protein VITISV_028697 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/256 (69%), Positives = 216/256 (84%), Gaps = 1/256 (0%)
Query: 69 ATATATSNSTIQLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHI 128
TA+ + + L S L +F VT RC D VP +LVRQTI+DR+FNGTSP+ +FPPPH+
Sbjct: 39 GTASIPTTAGAALAESDLGHFGVTRRCG-DPVPSKLVRQTILDRVFNGTSPFDSFPPPHV 97
Query: 129 SHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILC 188
HLLR +RIKGWGS GAVF NLI +V+PR IIEVG FLGASA+HMA + QLGL +QI+C
Sbjct: 98 VHLLRPKRIKGWGSNGAVFENLIRRVKPRTIIEVGXFLGASAIHMAEVASQLGLKTQIIC 157
Query: 189 IDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW 248
+DDFRGWPGFRD+FK+I M+NG+V+L +QF+QN+I+ NA DSVLPVPFS+ S L KLCE
Sbjct: 158 LDDFRGWPGFRDRFKDIAMINGDVMLLYQFMQNIIHVNATDSVLPVPFSTASTLDKLCEL 217
Query: 249 GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308
GV+GDLIE+DAGHDFNSAW+DINRA+RILRPGGVIFGHDYFT+ DN+GVRRAVNLFA++N
Sbjct: 218 GVLGDLIEVDAGHDFNSAWSDINRAYRILRPGGVIFGHDYFTSVDNKGVRRAVNLFARLN 277
Query: 309 GLKVQIDGQHWVIHSA 324
L+VQ+DGQHWVI SA
Sbjct: 278 KLRVQLDGQHWVIDSA 293
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449519752|ref|XP_004166898.1| PREDICTED: uncharacterized LOC101217115 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/315 (59%), Positives = 231/315 (73%), Gaps = 31/315 (9%)
Query: 26 PTAYIILLLLSYALGYLSSPK-----------------PHTPPPPPPSRPRAGAGAGAAT 68
P AY I+LLL+YALGYLSS TPPP S P +
Sbjct: 22 PAAYFIILLLTYALGYLSSSPSTSASSSLSPPPSNSDITSTPPPYHYSTPDQ-----SQL 76
Query: 69 ATATATSNSTIQLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHI 128
T T P L+ FR+ TRC+ +P Q VR TI+ +FNG SP+++FP PH+
Sbjct: 77 FQVTDT--------PPELNQFRIKTRCSP-PIPHQQVRSTILQNVFNGQSPFIDFPQPHV 127
Query: 129 SHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILC 188
+HLL ++IKGWGS GAVFGNL+ +V+PR IIEVGSFLGASA HMA+LTRQLGL +QILC
Sbjct: 128 AHLLHPKKIKGWGSNGAVFGNLVTQVKPRTIIEVGSFLGASATHMADLTRQLGLHTQILC 187
Query: 189 IDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW 248
+DDFRGWPGF D+FK++ M+NG+V L +QF+QNV+ NA DS++P+PFS+GS L LCEW
Sbjct: 188 VDDFRGWPGFLDRFKDLSMINGDVSLLYQFMQNVVSTNASDSIIPLPFSTGSVLDSLCEW 247
Query: 249 GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308
GV GDLIE+DAGHDFNSAW+DINRA RILRPGGV+FGHDYF +ADNRGVRRAVNLFA+IN
Sbjct: 248 GVYGDLIEVDAGHDFNSAWSDINRAHRILRPGGVLFGHDYFLSADNRGVRRAVNLFAQIN 307
Query: 309 GLKVQIDGQHWVIHS 323
G KV++DGQHW++ S
Sbjct: 308 GFKVKVDGQHWILVS 322
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445716|ref|XP_004140618.1| PREDICTED: uncharacterized protein LOC101217115 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/315 (59%), Positives = 230/315 (73%), Gaps = 31/315 (9%)
Query: 26 PTAYIILLLLSYALGYLSSPK-----------------PHTPPPPPPSRPRAGAGAGAAT 68
P AY I+LLL+YALGYLSS TPPP S P +
Sbjct: 22 PAAYFIILLLTYALGYLSSSPSTSASSSLSPPPLNSDITSTPPPYHYSTPDQ-----SQL 76
Query: 69 ATATATSNSTIQLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHI 128
T T P L+ FR+ TRC+ +P Q VR TI+ +FNG SP+++FP PH+
Sbjct: 77 FQVTDT--------PPELNQFRIKTRCSP-PIPHQQVRSTILQNVFNGQSPFIDFPQPHV 127
Query: 129 SHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILC 188
+HLL ++IKGWGS GAVF NL+ +V+PR IIEVGSFLGASA HMA+LTRQLGL +QILC
Sbjct: 128 AHLLHPKKIKGWGSNGAVFRNLVTQVKPRTIIEVGSFLGASATHMADLTRQLGLHTQILC 187
Query: 189 IDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW 248
+DDFRGWPGF D+FK++ M+NG+V L +QF+QNV+ NA DS++P+PFS+GS L LCEW
Sbjct: 188 VDDFRGWPGFLDRFKDLSMINGDVSLLYQFMQNVVSTNASDSIIPLPFSTGSVLDSLCEW 247
Query: 249 GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308
GV GDLIE+DAGHDFNSAW+DINRA RILRPGGV+FGHDYF +ADNRGVRRAVNLFA+IN
Sbjct: 248 GVYGDLIEVDAGHDFNSAWSDINRAHRILRPGGVLFGHDYFLSADNRGVRRAVNLFAQIN 307
Query: 309 GLKVQIDGQHWVIHS 323
G KV++DGQHW++ S
Sbjct: 308 GFKVKVDGQHWILVS 322
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520237|ref|XP_003528770.1| PREDICTED: uncharacterized protein LOC100795196 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 170/237 (71%), Positives = 203/237 (85%), Gaps = 2/237 (0%)
Query: 89 FRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRR-RIKGWGSYGAVF 147
FRVTTRCA D +PP+ VR+T++DR+FNGTSP+ NFPPPH + LRR ++KGWGS G VF
Sbjct: 77 FRVTTRCA-DPIPPESVRRTLVDRLFNGTSPFENFPPPHAAAKLRRTTKVKGWGSTGKVF 135
Query: 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM 207
NLI +VRPR ++EVG+FLGASA+HMA LTR+LGL++QILC+DDFRGW GFRD+F +IPM
Sbjct: 136 ENLIRRVRPRTVVEVGTFLGASAIHMAELTRRLGLETQILCVDDFRGWAGFRDRFSKIPM 195
Query: 208 VNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAW 267
NG+V L++QFLQNV+ N SV+PVPFSSGS L CEWGV DLIEIDAGHDF SAW
Sbjct: 196 QNGDVWLFYQFLQNVVTFNQTGSVMPVPFSSGSTLMLFCEWGVFADLIEIDAGHDFLSAW 255
Query: 268 ADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQIDGQHWVIHSA 324
ADINR +RIL+PGGVIFGHDYFTAADNRGVRRAV+LFAK+N LKV +DGQHWVI+S+
Sbjct: 256 ADINRGFRILQPGGVIFGHDYFTAADNRGVRRAVDLFAKVNNLKVNVDGQHWVIYSS 312
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
No hits with e-value below 0.001 by BLAST
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 327 | |||
| pfam13578 | 105 | pfam13578, Methyltransf_24, Methyltransferase doma | 6e-14 | |
| pfam04989 | 206 | pfam04989, CmcI, Cephalosporin hydroxylase | 5e-07 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 5e-04 |
| >gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-14
Identities = 29/129 (22%), Positives = 47/129 (36%), Gaps = 24/129 (18%)
Query: 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219
+E+G + G S L +A + GL + ID WPG + + + L
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGR-LYSID---PWPGAEAGAN---LRKAGLADRVRLL 53
Query: 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRP 279
+ A+ + DL+ ID H + + AD+ +L P
Sbjct: 54 RG-DSLEALARLPDGSI----------------DLLFIDGDHTYEAVLADLELWLPLLAP 96
Query: 280 GGVIFGHDY 288
GG+I HD
Sbjct: 97 GGIIVFHDI 105
|
This family appears to be a methyltransferase domain. Length = 105 |
| >gnl|CDD|218365 pfam04989, CmcI, Cephalosporin hydroxylase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-07
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCID-DFR 193
+ LI +++P +IIE G G SAL A++ LG D ++L ID D R
Sbjct: 22 VAYQELIWELKPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIR 71
|
Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified. Length = 206 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 35/146 (23%), Positives = 59/146 (40%), Gaps = 29/146 (19%)
Query: 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFK 203
GA+ L P+ I+E+G+ +G SAL MA L D ++ I+
Sbjct: 48 GALLRLLARLSGPKRILEIGTAIGYSALWMA---LALPDDGRLTTIE------------- 91
Query: 204 EIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVG--DLIEIDAGH 261
+ + + + + +D + + G AL L + G DL+ IDA
Sbjct: 92 ----RDEE---RAEIARENLAEAGVDDRIEL-LLGGDALDVL-SRLLDGSFDLVFIDADK 142
Query: 262 DFNSAWADINRAWRILRPGGVIFGHD 287
+ + RA +LRPGG+I +
Sbjct: 143 ADYPEY--LERALPLLRPGGLIVADN 166
|
Length = 219 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.91 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.91 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.91 | |
| PLN02476 | 278 | O-methyltransferase | 99.9 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.87 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 99.83 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 99.73 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 99.73 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.47 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.41 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 99.4 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.39 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.38 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.35 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.35 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.34 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.33 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.32 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.31 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.29 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.29 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.29 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.28 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.27 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.25 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.25 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.25 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.24 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.23 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.23 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.22 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.21 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.2 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.18 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.14 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.12 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.09 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.08 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.08 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.07 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.06 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.06 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.05 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.04 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.04 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.04 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.04 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.03 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.03 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.0 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.0 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.0 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.99 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.99 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.99 | |
| PLN02366 | 308 | spermidine synthase | 98.97 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.97 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.97 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.96 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.96 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.95 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.95 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.94 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.92 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.91 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.91 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.9 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.89 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.89 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.89 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.88 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.87 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.87 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.87 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 98.87 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.87 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.86 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.86 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.86 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.85 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.84 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.83 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.81 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.81 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 98.81 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.8 | |
| PLN02823 | 336 | spermine synthase | 98.8 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.8 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.8 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.8 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.8 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.8 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.79 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.79 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.78 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.77 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.76 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.76 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.76 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.74 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.73 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.72 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.72 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.72 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.71 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.71 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.69 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.67 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.67 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.67 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.67 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.67 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.65 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.64 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.63 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.63 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.63 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.61 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.61 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.61 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.61 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.61 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.6 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.59 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.59 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.58 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.58 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.55 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.55 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.54 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.54 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.53 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.47 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.44 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.39 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.39 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.38 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.37 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.35 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.34 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.34 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.33 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.33 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.32 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.31 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.31 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.31 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.29 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.28 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.23 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.22 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.21 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.2 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.17 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.13 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.1 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.09 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.07 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.06 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.05 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.03 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.03 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.99 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 97.98 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 97.96 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.95 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.95 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.91 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.9 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.86 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.84 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.84 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.83 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.81 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.78 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.74 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 97.7 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.69 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.69 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.66 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.62 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.59 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.59 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.54 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 97.52 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.51 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.5 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.46 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.44 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.4 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.36 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.34 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.29 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.29 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.28 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.27 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.26 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.24 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.21 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.21 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.21 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.19 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.17 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.14 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.1 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.09 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.04 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.04 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.02 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.01 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.94 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 96.93 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.87 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 96.84 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.83 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.8 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.77 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.76 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 96.71 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 96.71 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 96.69 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.55 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.54 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 96.53 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.5 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.39 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.21 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.17 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.14 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.1 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 95.99 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.93 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.73 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 95.61 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 95.61 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.56 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.39 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 95.38 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 95.24 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.15 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.01 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 94.9 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 94.68 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 94.4 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 94.27 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.19 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 93.73 | |
| PHA01634 | 156 | hypothetical protein | 93.5 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 93.47 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 93.42 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 93.36 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 93.35 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 93.33 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 93.12 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.92 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 92.47 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 92.45 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.77 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 91.49 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 91.39 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 91.18 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 90.82 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 90.72 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 90.67 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 90.66 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 90.22 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 89.42 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 88.76 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 88.63 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 88.51 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 88.17 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 88.1 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 88.06 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 87.47 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 86.83 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 86.69 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 86.52 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 86.01 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 85.53 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 85.26 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 85.22 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 84.8 | |
| COG4121 | 252 | Uncharacterized conserved protein [Function unknow | 84.67 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 84.45 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 84.21 | |
| TIGR01627 | 225 | A_thal_3515 uncharacterized plant-specific domain | 83.6 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 81.77 | |
| PF08351 | 92 | DUF1726: Domain of unknown function (DUF1726); Int | 81.43 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 81.17 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 81.11 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 80.82 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 80.58 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 80.25 |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-24 Score=193.13 Aligned_cols=152 Identities=26% Similarity=0.302 Sum_probs=128.4
Q ss_pred chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 141 ~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
+++|++|..|++..++++||||||+.||||+|||.+ ++.++++++||.++++.+.|++
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~---l~~~g~l~tiE~~~e~~~~A~~------------------- 102 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALA---LPDDGRLTTIERDEERAEIARE------------------- 102 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhh---CCCCCeEEEEeCCHHHHHHHHH-------------------
Confidence 488999999999999999999999999999999996 6668999999999999999887
Q ss_pred HHhhhccCCcccceEeee-cchhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC----C-
Q 041517 221 NVIYQNAIDSVLPVPFSS-GSALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA----D- 293 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~-gda~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~----~- 293 (327)
|+..+|..++ |.+.. |++.+.|.. ..++|||||||+++..++ .+++.++++|+|||+|++||+.+.. .
T Consensus 103 n~~~ag~~~~---i~~~~~gdal~~l~~~~~~~fDliFIDadK~~yp--~~le~~~~lLr~GGliv~DNvl~~G~v~~~~ 177 (219)
T COG4122 103 NLAEAGVDDR---IELLLGGDALDVLSRLLDGSFDLVFIDADKADYP--EYLERALPLLRPGGLIVADNVLFGGRVADPS 177 (219)
T ss_pred HHHHcCCcce---EEEEecCcHHHHHHhccCCCccEEEEeCChhhCH--HHHHHHHHHhCCCcEEEEeecccCCccCCcc
Confidence 6667788777 66666 699999986 579999999999998888 9999999999999999999999942 1
Q ss_pred -------chhHHHHHHHHHHHcCCe--EEEccceE
Q 041517 294 -------NRGVRRAVNLFAKINGLK--VQIDGQHW 319 (327)
Q Consensus 294 -------~~GV~~Av~~f~~~~gl~--v~~~gq~w 319 (327)
..+++++.+...++++++ +.+.|...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDGl 212 (219)
T COG4122 178 IRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDGL 212 (219)
T ss_pred chhHHHHHHHHHHHHHHHhhCcCceeEEEecCCce
Confidence 123677777777777776 35544433
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-24 Score=196.91 Aligned_cols=164 Identities=20% Similarity=0.148 Sum_probs=130.0
Q ss_pred CCCCcCCCccccccccC-cCCCChHHHHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEE
Q 041517 81 LPPSLLDNFRVTTRCAA-DSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVI 159 (327)
Q Consensus 81 ~~~~~~d~~~~~~~~~~-~~~~~~~v~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~V 159 (327)
..|..+++|. ... ...+.+.+++.+.+..- -...|...+. .++++||..|++..+|++|
T Consensus 24 ~~~~~i~~Y~----~~~~~~~~~~~~L~~l~~~a~-----~~~~~~~~~~-----------~~~g~lL~~l~~~~~ak~i 83 (247)
T PLN02589 24 LQSDALYQYI----LETSVYPREPESMKELRELTA-----KHPWNIMTTS-----------ADEGQFLNMLLKLINAKNT 83 (247)
T ss_pred cCcHHHHHHH----HHhccCCCCCHHHHHHHHHHH-----hcCCCCCccC-----------HHHHHHHHHHHHHhCCCEE
Confidence 5578888888 220 23355566666655321 1122322222 2679999999999999999
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
|||||++||||++||++ ++++++|++||.++++.+.|++ ++..+|+.++ |++..|
T Consensus 84 LEiGT~~GySal~la~a---l~~~g~v~tiE~~~~~~~~Ar~-------------------~~~~ag~~~~---I~~~~G 138 (247)
T PLN02589 84 MEIGVYTGYSLLATALA---LPEDGKILAMDINRENYELGLP-------------------VIQKAGVAHK---IDFREG 138 (247)
T ss_pred EEEeChhhHHHHHHHhh---CCCCCEEEEEeCCHHHHHHHHH-------------------HHHHCCCCCc---eEEEec
Confidence 99999999999999996 6779999999999998888877 4555677667 999999
Q ss_pred chhhhhhhc------CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 240 SALTKLCEW------GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 240 da~~~L~~l------~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
++.+.|+.+ .++|||||||+++..+. .+++.++++|+|||+|++||+.|.
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~--~y~~~~l~ll~~GGviv~DNvl~~ 194 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDADKDNYI--NYHKRLIDLVKVGGVIGYDNTLWN 194 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCCHHHhH--HHHHHHHHhcCCCeEEEEcCCCCC
Confidence 999999875 26999999999997665 999999999999999999999984
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-24 Score=192.76 Aligned_cols=153 Identities=25% Similarity=0.313 Sum_probs=123.9
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
++|++|..|++..+|++||||||++||||++||++ ++++++|++||.++++.+.|++ +
T Consensus 32 ~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~---l~~~g~i~tiE~~~~~~~~A~~-------------------~ 89 (205)
T PF01596_consen 32 ETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEA---LPEDGKITTIEIDPERAEIARE-------------------N 89 (205)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHT---STTTSEEEEEESSHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHhcCCceEEEeccccccHHHHHHHh---hcccceEEEecCcHHHHHHHHH-------------------H
Confidence 68999999999999999999999999999999995 6789999999999999988877 4
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC----
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA---- 292 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~---- 292 (327)
+..+|+.++ |++..|++.+.|+.+ .++|||||||+++..+. .+++.+.++|+|||+||+||+.|..
T Consensus 90 ~~~ag~~~~---I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~--~y~~~~~~ll~~ggvii~DN~l~~G~V~~ 164 (205)
T PF01596_consen 90 FRKAGLDDR---IEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYL--EYFEKALPLLRPGGVIIADNVLWRGSVAD 164 (205)
T ss_dssp HHHTTGGGG---EEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHH--HHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred HHhcCCCCc---EEEEEeccHhhHHHHHhccCCCceeEEEEcccccchh--hHHHHHhhhccCCeEEEEccccccceecC
Confidence 455666666 999999999988875 24899999999986544 8999999999999999999999821
Q ss_pred ---Cch---hHHHHHHHHHHHcCCe--EEEccceEEE
Q 041517 293 ---DNR---GVRRAVNLFAKINGLK--VQIDGQHWVI 321 (327)
Q Consensus 293 ---~~~---GV~~Av~~f~~~~gl~--v~~~gq~w~i 321 (327)
..+ .++++.+.+.+..+++ +.+.|..-.|
T Consensus 165 ~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdGl~l 201 (205)
T PF01596_consen 165 PDDEDPKTVAIREFNEYIANDPRFETVLLPIGDGLTL 201 (205)
T ss_dssp TTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTEEEE
T ss_pred ccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCeeEE
Confidence 112 2566777777777765 5567766554
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-23 Score=195.41 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=145.7
Q ss_pred CCCCCcCCCccccccccCcCCCChHHHHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEE
Q 041517 80 QLPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVI 159 (327)
Q Consensus 80 ~~~~~~~d~~~~~~~~~~~~~~~~~v~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~V 159 (327)
...+..+++|. -. ..+.+.+.+++.+.... . ..+...+. ++++++|..|++..++++|
T Consensus 65 ~~~~~~i~~Y~----~~--~~~~~~~L~~l~e~a~~--~---~~~~~~v~-----------~~~g~lL~~L~~~~~ak~V 122 (278)
T PLN02476 65 ISLTPRLYDYV----LS--NVREPKILRQLREETSK--M---RGSQMQVS-----------PDQAQLLAMLVQILGAERC 122 (278)
T ss_pred ccchHHHHHHH----Hh--cCCCCHHHHHHHHHHHh--c---cCCccccC-----------HHHHHHHHHHHHhcCCCeE
Confidence 35567777787 22 24566666666653211 1 11111222 3789999999999999999
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
|||||++|+||++||++ ++++++|+++|.++++.+.|++ |+..+|..++ |++..|
T Consensus 123 LEIGT~tGySal~lA~a---l~~~G~V~TiE~d~e~~~~Ar~-------------------n~~~aGl~~~---I~li~G 177 (278)
T PLN02476 123 IEVGVYTGYSSLAVALV---LPESGCLVACERDSNSLEVAKR-------------------YYELAGVSHK---VNVKHG 177 (278)
T ss_pred EEecCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEEEEc
Confidence 99999999999999996 6778999999999999988877 5556677666 999999
Q ss_pred chhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCc----------hhHHHHHHHH
Q 041517 240 SALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN----------RGVRRAVNLF 304 (327)
Q Consensus 240 da~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~----------~GV~~Av~~f 304 (327)
++.+.|+.+ .++||+||||+++..+ ..+++.++++|+|||+|++||+.|...+ .+++++.+.+
T Consensus 178 dA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y--~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v 255 (278)
T PLN02476 178 LAAESLKSMIQNGEGSSYDFAFVDADKRMY--QDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKL 255 (278)
T ss_pred CHHHHHHHHHhcccCCCCCEEEECCCHHHH--HHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHH
Confidence 999998775 3689999999998554 4899999999999999999999994322 2356666667
Q ss_pred HHHcCCe--EEEccceEEE
Q 041517 305 AKINGLK--VQIDGQHWVI 321 (327)
Q Consensus 305 ~~~~gl~--v~~~gq~w~i 321 (327)
.++.++. +.+.|..-.|
T Consensus 256 ~~d~~~~~~llPigDGl~i 274 (278)
T PLN02476 256 MDDKRVSISMVPIGDGMTI 274 (278)
T ss_pred hhCCCEEEEEEEeCCeeEE
Confidence 7777765 5566655444
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-21 Score=180.01 Aligned_cols=166 Identities=17% Similarity=0.152 Sum_probs=125.9
Q ss_pred CCCCcCCCccccccccCcCCCChHHHHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEEE
Q 041517 81 LPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVII 160 (327)
Q Consensus 81 ~~~~~~d~~~~~~~~~~~~~~~~~v~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~VL 160 (327)
..|..++.|... +. ...+.+...+.+.+... ..+...+...+. .+++++|..|++..++++||
T Consensus 11 ~~~~~~~~y~~~--~~-~~~~~~~~l~~~~~~a~---~~~~~~~~~~v~-----------~~~g~~L~~l~~~~~~~~vL 73 (234)
T PLN02781 11 LKSEALKQYIME--TS-AYPREHELLKELREATV---QKYGNLSEMEVP-----------VDEGLFLSMLVKIMNAKNTL 73 (234)
T ss_pred CCcHHHHHHHHH--hc-cCCCCCHHHHHHHHHHH---hccccCcccccC-----------HHHHHHHHHHHHHhCCCEEE
Confidence 445678888711 11 23456666666655321 111111212222 26789999999999999999
Q ss_pred EEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecc
Q 041517 161 EVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGS 240 (327)
Q Consensus 161 EIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gd 240 (327)
|||||+|+|+++||++ ++++++|+++|.++++.+.|++ |+...|+.++ |++..|+
T Consensus 74 EiGt~~G~s~l~la~~---~~~~g~v~tiD~d~~~~~~A~~-------------------n~~~~gl~~~---i~~~~gd 128 (234)
T PLN02781 74 EIGVFTGYSLLTTALA---LPEDGRITAIDIDKEAYEVGLE-------------------FIKKAGVDHK---INFIQSD 128 (234)
T ss_pred EecCcccHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEEEEcc
Confidence 9999999999999996 5668999999999999888877 5555666666 8999999
Q ss_pred hhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 241 ALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 241 a~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+.|+.+ .++||+||+|+++..+ ..+++.+.++|+|||+|++||+.|
T Consensus 129 a~~~L~~l~~~~~~~~fD~VfiDa~k~~y--~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 129 ALSALDQLLNNDPKPEFDFAFVDADKPNY--VHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHHHHHHHHhCCCCCCCCEEEECCCHHHH--HHHHHHHHHhcCCCeEEEEEcCCc
Confidence 99988765 3689999999998544 489999999999999999999998
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=169.51 Aligned_cols=123 Identities=28% Similarity=0.288 Sum_probs=108.2
Q ss_pred chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 141 ~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
+++++|+.+|++..+|+++||||+++|||++.+|.+ ++++|+|+++|+++...+.+.++
T Consensus 59 ~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Ala---lp~dGrv~a~eid~~~~~~~~~~------------------ 117 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALA---LPEDGRVVAIEIDADAYEIGLEL------------------ 117 (237)
T ss_pred hHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHh---cCCCceEEEEecChHHHHHhHHH------------------
Confidence 467899999999999999999999999999999996 89999999999999887766543
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..+|...+ |.++.|.+.+.|.++ .+.|||+|+|++++++. .+++++++++|+||+|++|++.|
T Consensus 118 -~k~agv~~K---I~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~--~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 118 -VKLAGVDHK---ITFIEGPALESLDELLADGESGTFDFAFVDADKDNYS--NYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred -HHhccccce---eeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHH--HHHHHHHhhcccccEEEEecccc
Confidence 334555555 999999999988765 37999999999998766 99999999999999999999988
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-18 Score=139.46 Aligned_cols=105 Identities=30% Similarity=0.447 Sum_probs=52.8
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
|||||+.|+|+++|+++++... .+++++||.+++ .+..++ .+...+..++ +++..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~-~~~~~~-------------------~~~~~~~~~~---~~~~~g 56 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPG-DEQAQE-------------------IIKKAGLSDR---VEFIQG 56 (106)
T ss_dssp ---------------------------EEEESS--------------------------------GGG-BT---EEEEES
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCc-ccccch-------------------hhhhcCCCCe---EEEEEc
Confidence 7999999999999999865322 258999999996 111111 1222334444 899999
Q ss_pred chhhhhhhcC-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 240 SALTKLCEWG-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 240 da~~~L~~l~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
++.+.++.+. ++||+|||||+|.++.+..+++.++++|+|||+|++|||
T Consensus 57 ~s~~~l~~~~~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 57 DSPDFLPSLPDGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp -THHHHHHHHH--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CcHHHHHHcCCCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 9999888875 899999999999999999999999999999999999997
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-17 Score=154.27 Aligned_cols=149 Identities=26% Similarity=0.346 Sum_probs=105.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCC-CCcEEEEEeCCCCChhhhhhhcc----cCc--ccc-chHHHHHHHHHHhhhc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLG-LDSQILCIDDFRGWPGFRDKFKE----IPM--VNG-NVLLYFQFLQNVIYQN 226 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~-~~~~V~~ID~~~~~~~~A~~~~~----~~~--~~g-~~~~~~~Fl~nv~~~g 226 (327)
-|+.|+|+||+.|.|++.|+..++.++ ++.+++++|.|+|+++...+... ... ..+ .....+++.+|+...|
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 489999999999999999888776655 47789999999999886532111 111 111 1233556777776655
Q ss_pred c-CCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 227 A-IDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 227 ~-~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+ .++ +.+.+|...++|+.. .+++.+++||+|. |+++...|+.++++|.|||+||+|||.. +|.++||++|
T Consensus 154 l~~~~---v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-YesT~~aLe~lyprl~~GGiIi~DDY~~----~gcr~AvdeF 225 (248)
T PF05711_consen 154 LLDDN---VRFVKGWFPDTLPDAPIERIALLHLDCDL-YESTKDALEFLYPRLSPGGIIIFDDYGH----PGCRKAVDEF 225 (248)
T ss_dssp TSSTT---EEEEES-HHHHCCC-TT--EEEEEE---S-HHHHHHHHHHHGGGEEEEEEEEESSTTT----HHHHHHHHHH
T ss_pred CCccc---EEEECCcchhhhccCCCccEEEEEEeccc-hHHHHHHHHHHHhhcCCCeEEEEeCCCC----hHHHHHHHHH
Confidence 4 234 899999999999875 4799999999999 8999999999999999999999999987 8999999999
Q ss_pred HHHcCCe
Q 041517 305 AKINGLK 311 (327)
Q Consensus 305 ~~~~gl~ 311 (327)
.+++|++
T Consensus 226 ~~~~gi~ 232 (248)
T PF05711_consen 226 RAEHGIT 232 (248)
T ss_dssp HHHTT--
T ss_pred HHHcCCC
Confidence 9999986
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-13 Score=111.56 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=82.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.+++. .++.++++||.++.+.+.+++. ....+..++ |
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~~~---i 54 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARL----FPGARVVGVDISPEMLEIARER-------------------AAEEGLSDR---I 54 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHH----HTTSEEEEEESSHHHHHHHHHH-------------------HHHTTTTTT---E
T ss_pred CCCEEEEEcCcCCHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHH-------------------HHhcCCCCC---e
Confidence 3579999999999999999993 3489999999999999888763 322334445 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCC-C---CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHD-F---NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~-~---~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+..++. ........+||+|++++ ... + +.....++.+.++|+|||++++++
T Consensus 55 ~~~~~d~-~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 55 TFVQGDA-EFDPDFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEEESCC-HGGTTTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEECcc-ccCcccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 8999988 43345567899999998 321 2 233566999999999999999875
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-13 Score=123.31 Aligned_cols=166 Identities=17% Similarity=0.256 Sum_probs=87.2
Q ss_pred HHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcE
Q 041517 106 RQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQ 185 (327)
Q Consensus 106 ~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~ 185 (327)
.++.+.+.|+.-++..+.-. .++..-.-..|.. .++. ++...++.+|||+|||+|..+..+++. ++++++
T Consensus 5 k~~~v~~~Fd~ia~~YD~~n----~~ls~g~~~~wr~--~~~~-~~~~~~g~~vLDv~~GtG~~~~~l~~~---~~~~~~ 74 (233)
T PF01209_consen 5 KEQYVRKMFDRIAPRYDRMN----DLLSFGQDRRWRR--KLIK-LLGLRPGDRVLDVACGTGDVTRELARR---VGPNGK 74 (233)
T ss_dssp ------------------------------------S--HHHH-HHT--S--EEEEET-TTSHHHHHHGGG---SS---E
T ss_pred HHHHHHHHHHHHHHHhCCCc----cccCCcHHHHHHH--HHHh-ccCCCCCCEEEEeCCChHHHHHHHHHH---CCCccE
Confidence 34456677766665333321 1222223345522 2333 334456789999999999999999884 677899
Q ss_pred EEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCC
Q 041517 186 ILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFN 264 (327)
Q Consensus 186 V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~ 264 (327)
|+++|++++|.+.+++. +...+.. .|++..+++.+ |+..+.+||.|.+--. +..+
T Consensus 75 v~~vD~s~~ML~~a~~k-------------------~~~~~~~----~i~~v~~da~~-lp~~d~sfD~v~~~fglrn~~ 130 (233)
T PF01209_consen 75 VVGVDISPGMLEVARKK-------------------LKREGLQ----NIEFVQGDAED-LPFPDNSFDAVTCSFGLRNFP 130 (233)
T ss_dssp EEEEES-HHHHHHHHHH-------------------HHHTT------SEEEEE-BTTB---S-TT-EEEEEEES-GGG-S
T ss_pred EEEecCCHHHHHHHHHH-------------------HHhhCCC----CeeEEEcCHHH-hcCCCCceeEEEHHhhHHhhC
Confidence 99999999999988763 2222221 28999999877 4665799999998754 4446
Q ss_pred cHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 265 SAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 265 ~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+....+++++++|||||.+++-|+.. |..+-.+.+...+.+
T Consensus 131 d~~~~l~E~~RVLkPGG~l~ile~~~-p~~~~~~~~~~~y~~ 171 (233)
T PF01209_consen 131 DRERALREMYRVLKPGGRLVILEFSK-PRNPLLRALYKFYFK 171 (233)
T ss_dssp SHHHHHHHHHHHEEEEEEEEEEEEEB--SSHHHHHHHHH---
T ss_pred CHHHHHHHHHHHcCCCeEEEEeeccC-CCCchhhceeeeeec
Confidence 67789999999999999999999987 555556555554443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=117.55 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=91.5
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..-..++.|+..++|+.|+|+|+..|.|++++|.+++.++..++|++||++-.-.. ++.
T Consensus 19 ~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a------------------- 77 (206)
T PF04989_consen 19 QDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKA------------------- 77 (206)
T ss_dssp HHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-G-------------------
T ss_pred HHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHH-------------------
Confidence 34457788888999999999999999999999999988888999999999543221 110
Q ss_pred HhhhccCCcccceEeeecchhh--hhhh---c--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC---
Q 041517 222 VIYQNAIDSVLPVPFSSGSALT--KLCE---W--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA--- 291 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~--~L~~---l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~--- 291 (327)
+..-.+..+ |.+..|++.+ .+.. + .....+|+.|++|.+..+.+.|+.+.+++++|+++|+-|...+
T Consensus 78 ~e~hp~~~r---I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~ 154 (206)
T PF04989_consen 78 IESHPMSPR---ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWP 154 (206)
T ss_dssp GGG----TT---EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHH
T ss_pred HhhccccCc---eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccc
Confidence 000011223 8888887653 2221 2 2345599999999999999999999999999999999887651
Q ss_pred ------CCc-h--hHHHHHHHHHHHcCCeEEEc
Q 041517 292 ------ADN-R--GVRRAVNLFAKINGLKVQID 315 (327)
Q Consensus 292 ------~~~-~--GV~~Av~~f~~~~gl~v~~~ 315 (327)
+.| + +.+.|+.+|..++.- ..+|
T Consensus 155 ~~~~~~~~w~~g~~p~~av~~fL~~~~~-f~iD 186 (206)
T PF04989_consen 155 ESWFPDRPWGPGNNPKTAVKEFLAEHPD-FEID 186 (206)
T ss_dssp HS-------------HHHHHHHHHTTTT-EEEE
T ss_pred cccccccchhhhhHHHHHHHHHHHHCCC-cEec
Confidence 111 2 279999999998873 4443
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-12 Score=123.19 Aligned_cols=120 Identities=11% Similarity=0.025 Sum_probs=93.8
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 143 YGAVFGNLIDKVRPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 143 ~g~lL~~L~~~~~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
++.+|..+... +|++|+||||| .|++++++++. +.++++++++|.++.+.+.|++...
T Consensus 112 E~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~---~~p~~~~~giD~d~~ai~~Ar~~~~----------------- 170 (296)
T PLN03075 112 EFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKH---HLPTTSFHNFDIDPSANDVARRLVS----------------- 170 (296)
T ss_pred HHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHh---cCCCCEEEEEeCCHHHHHHHHHHhh-----------------
Confidence 35666666555 89999999999 66788888763 5779999999999999998877321
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC--CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF--NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
...++.++ |.|..+|+.+..+. .+.||+||+++-|.+ ....+.++.+.+.|+|||++++--+
T Consensus 171 -~~~gL~~r---V~F~~~Da~~~~~~-l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 171 -SDPDLSKR---MFFHTADVMDVTES-LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -hccCccCC---cEEEECchhhcccc-cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 12345555 99999998875322 368999999987765 5667899999999999999998653
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=117.13 Aligned_cols=124 Identities=20% Similarity=0.212 Sum_probs=99.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..|+.+++. .+ .++|+++|++++|.+.+++.. ...+.. .+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~---~g-~g~v~~~D~s~~ML~~a~~k~-------------------~~~~~~----~i 103 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKS---VG-TGEVVGLDISESMLEVAREKL-------------------KKKGVQ----NV 103 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHh---cC-CceEEEEECCHHHHHHHHHHh-------------------hccCcc----ce
Confidence 6889999999999999999996 45 899999999999999987732 112221 18
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
++..++|.+ ||..+.+||+|.+.-..++ .+....|++++|.|+|||++++-+... |..+.++.+...+...
T Consensus 104 ~fv~~dAe~-LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~-p~~~~~~~~~~~~~~~ 175 (238)
T COG2226 104 EFVVGDAEN-LPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK-PDNPVLRKAYILYYFK 175 (238)
T ss_pred EEEEechhh-CCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC-CCchhhHHHHHHHHHH
Confidence 899999877 6777899999999865443 667789999999999999999999987 5556666666655443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=110.71 Aligned_cols=126 Identities=18% Similarity=0.263 Sum_probs=93.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||+|||+|..++.+|+. +++.++|+++|.++.+.+.+++ |+...+..+.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~---~~~~~~v~avD~~~~~~~~a~~-------------------n~~~~g~~~~--- 93 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLL---VGETGKVYAVDKDEKAINLTRR-------------------NAEKFGVLNN--- 93 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHH-------------------HHHHhCCCCC---
Confidence 34579999999999999999885 4567899999999999888776 3333343233
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.+..++..+.++.+...||+||+.+.. ......++.+.++|+|||+++++-... ..+.++...+ ++.|+.
T Consensus 94 v~~~~~d~~~~l~~~~~~~D~V~~~~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~~~~l-~~~g~~ 164 (198)
T PRK00377 94 IVLIKGEAPEILFTINEKFDRIFIGGGS--EKLKEIISASWEIIKKGGRIVIDAILL----ETVNNALSAL-ENIGFN 164 (198)
T ss_pred eEEEEechhhhHhhcCCCCCEEEECCCc--ccHHHHHHHHHHHcCCCcEEEEEeecH----HHHHHHHHHH-HHcCCC
Confidence 7777888877666666789999998754 334578999999999999999855432 3455555555 556653
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=116.36 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=90.8
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+....++++|||||||.|.++.++++. .++.++++||+++.+.+.+++++.. .
T Consensus 57 m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~-------------------~ 113 (262)
T PRK04457 57 MMGFLLFNPRPQHILQIGLGGGSLAKFIYTY----LPDTRQTAVEINPQVIAVARNHFEL-------------------P 113 (262)
T ss_pred HHHHHhcCCCCCEEEEECCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHcCC-------------------C
Confidence 3344443446899999999999999999984 3588999999999999988875421 1
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC-----cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN-----SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~-----~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..++ +++..+|+.+.+.....+||+|++|+.+... ...+.++.+.++|+|||++++.-+..
T Consensus 114 ~~~~r---v~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 114 ENGER---FEVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCc---eEEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 11223 8888999998887766789999999855321 12578899999999999999965544
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=108.27 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=91.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||||||+|..++.+++. .++++|++||.++.+.+.+++ |+...+.. . ++
T Consensus 46 g~~VLDiGcGtG~~al~la~~----~~~~~V~giD~s~~~l~~A~~-------------------~~~~~~l~-~---i~ 98 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIA----RPELKVTLVDSLGKKIAFLRE-------------------VAAELGLK-N---VT 98 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHH----CCCCeEEEEeCcHHHHHHHHH-------------------HHHHcCCC-C---EE
Confidence 689999999999999999984 347899999999999988876 33333332 2 78
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+..+++.+. .. .++||+|+.++.. .....++.+.+.|+|||++++-+..+ ....+.+....+|+.+.
T Consensus 99 ~~~~d~~~~-~~-~~~fDlV~~~~~~---~~~~~l~~~~~~LkpGG~lv~~~~~~------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 99 VVHGRAEEF-GQ-EEKFDVVTSRAVA---SLSDLVELCLPLLKPGGRFLALKGRD------PEEEIAELPKALGGKVE 165 (187)
T ss_pred EEeccHhhC-CC-CCCccEEEEcccc---CHHHHHHHHHHhcCCCeEEEEEeCCC------hHHHHHHHHHhcCceEe
Confidence 888887773 33 6799999998743 34467899999999999999876443 34556666676788754
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=120.06 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=79.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++. +.+|++||.++.+.+.+++... ..+.... +
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~-------------------~~~~~~~---i 182 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHAD-------------------MDPVTST---I 182 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH-------------------hcCcccc---e
Confidence 3468999999999999999873 6799999999999988875321 1111112 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+++.+ ++..+++||+|+.-.. +-..+....++.+.++|+|||.+++.++..
T Consensus 183 ~~~~~dae~-l~~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 183 EYLCTTAEK-LADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred eEEecCHHH-hhhccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 788888765 3444578999996432 324456688999999999999999987654
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=113.04 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=107.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++-..+......+|+|.|+|+|..|..||++ +++.|+|+++|..+++.+.|++ |+...
T Consensus 85 ~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~---vg~~G~v~tyE~r~d~~k~A~~-------------------Nl~~~ 142 (256)
T COG2519 85 YIVARLGISPGSRVLEAGTGSGALTAYLARA---VGPEGHVTTYEIREDFAKTARE-------------------NLSEF 142 (256)
T ss_pred HHHHHcCCCCCCEEEEcccCchHHHHHHHHh---hCCCceEEEEEecHHHHHHHHH-------------------HHHHh
Confidence 3444445667789999999999999999996 7889999999999999998877 66666
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
++.++ |.+..+|..+... +..||.||+|- +.+|+.++.+...|+|||++++ |. |....|++.++.+.
T Consensus 143 ~l~d~---v~~~~~Dv~~~~~--~~~vDav~LDm----p~PW~~le~~~~~Lkpgg~~~~--y~--P~veQv~kt~~~l~ 209 (256)
T COG2519 143 GLGDR---VTLKLGDVREGID--EEDVDAVFLDL----PDPWNVLEHVSDALKPGGVVVV--YS--PTVEQVEKTVEALR 209 (256)
T ss_pred ccccc---eEEEecccccccc--ccccCEEEEcC----CChHHHHHHHHHHhCCCcEEEE--Ec--CCHHHHHHHHHHHH
Confidence 77776 7777788777543 34899999995 5688999999999999999887 33 55677888777775
Q ss_pred HHcCCe----EEEccceEEE
Q 041517 306 KINGLK----VQIDGQHWVI 321 (327)
Q Consensus 306 ~~~gl~----v~~~gq~w~i 321 (327)
+. |+. +.+...+|-.
T Consensus 210 ~~-g~~~ie~~E~l~R~~~v 228 (256)
T COG2519 210 ER-GFVDIEAVETLVRRWEV 228 (256)
T ss_pred hc-Cccchhhheeeeheeee
Confidence 54 442 3344445543
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=110.14 Aligned_cols=149 Identities=15% Similarity=0.057 Sum_probs=105.6
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
+.++..+.+ ...+|||||||+|..+..+++. .++.+|++||+++.+.+.+++. +.
T Consensus 31 ~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~----~p~~~v~gVD~s~~~i~~a~~~-------------------~~ 85 (202)
T PRK00121 31 LDWAELFGN--DAPIHLEIGFGKGEFLVEMAKA----NPDINFIGIEVHEPGVGKALKK-------------------IE 85 (202)
T ss_pred CCHHHHcCC--CCCeEEEEccCCCHHHHHHHHH----CCCccEEEEEechHHHHHHHHH-------------------HH
Confidence 345555544 5789999999999999999884 3478999999999999877653 22
Q ss_pred hhccCCcccceEeeecchhhhhhh-c-CCcEeEEEEcCCCCCC---------cHHHHHHHHHccCCCCeEEEEEcCCCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCE-W-GVVGDLIEIDAGHDFN---------SAWADINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~-l-~~~fDLIfIDa~h~~~---------~v~~dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
..+. .+ +.+..+++.+.++. + ++.||+|++.....+. .....++.+.++|+|||++++...
T Consensus 86 ~~~~-~~---v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~---- 157 (202)
T PRK00121 86 EEGL-TN---LRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD---- 157 (202)
T ss_pred HcCC-CC---EEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----
Confidence 2222 22 78888888444542 2 4789999985321110 123578999999999999987532
Q ss_pred CchhHHHHHHHHHHHcCCeEEEccceEEEecccC
Q 041517 293 DNRGVRRAVNLFAKINGLKVQIDGQHWVIHSAVN 326 (327)
Q Consensus 293 ~~~GV~~Av~~f~~~~gl~v~~~gq~w~i~~~~~ 326 (327)
..+....+.+.++..|+.+.....+|++.++-+
T Consensus 158 -~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 190 (202)
T PRK00121 158 -WEGYAEYMLEVLSAEGGFLVSEAGDYVPRPEGR 190 (202)
T ss_pred -CHHHHHHHHHHHHhCcccccccchhhcccCccC
Confidence 245666677777888998887777888776643
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=105.90 Aligned_cols=126 Identities=14% Similarity=0.078 Sum_probs=88.1
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...++.+|||||||+|..++.+|.. .++++|++||.++.+.+.++++ +...+.. .
T Consensus 39 ~~~~~~~vLDiGcGtG~~s~~la~~----~~~~~V~~iD~s~~~~~~a~~~-------------------~~~~~~~-~- 93 (181)
T TIGR00138 39 EYLDGKKVIDIGSGAGFPGIPLAIA----RPELKLTLLESNHKKVAFLREV-------------------KAELGLN-N- 93 (181)
T ss_pred HhcCCCeEEEecCCCCccHHHHHHH----CCCCeEEEEeCcHHHHHHHHHH-------------------HHHhCCC-C-
Confidence 3456889999999999999999874 4578999999999998877653 2222331 2
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+++..+++.+. . ..++||+|+.++-+ .....++.+.++|+|||++++..... ....+..++ +-|...|++
T Consensus 94 --i~~i~~d~~~~-~-~~~~fD~I~s~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~~--~~~~~~~~~-e~~~~~~~~ 163 (181)
T TIGR00138 94 --VEIVNGRAEDF-Q-HEEQFDVITSRALA---SLNVLLELTLNLLKVGGYFLAYKGKK--YLDEIEEAK-RKCQVLGVE 163 (181)
T ss_pred --eEEEecchhhc-c-ccCCccEEEehhhh---CHHHHHHHHHHhcCCCCEEEEEcCCC--cHHHHHHHH-HhhhhcCce
Confidence 78888887763 2 25789999998833 34467788899999999999864322 112233333 334445665
Q ss_pred E
Q 041517 312 V 312 (327)
Q Consensus 312 v 312 (327)
.
T Consensus 164 ~ 164 (181)
T TIGR00138 164 P 164 (181)
T ss_pred E
Confidence 4
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=111.73 Aligned_cols=103 Identities=18% Similarity=0.156 Sum_probs=78.1
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|+.+..+++. .+++++|+++|.++++.+.++++ +...+. ++
T Consensus 73 ~~~~g~~VLdIG~GsG~~t~~la~~---~~~~~~V~~vE~~~~~~~~a~~~-------------------l~~~g~-~~- 128 (212)
T PRK13942 73 DLKEGMKVLEIGTGSGYHAAVVAEI---VGKSGKVVTIERIPELAEKAKKT-------------------LKKLGY-DN- 128 (212)
T ss_pred CCCCcCEEEEECCcccHHHHHHHHh---cCCCCEEEEEeCCHHHHHHHHHH-------------------HHHcCC-CC-
Confidence 3445689999999999999999985 45678999999999999888763 332232 12
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..+|+.+.++. ..+||+|++++..... .+.+++.|+|||++++-
T Consensus 129 --v~~~~gd~~~~~~~-~~~fD~I~~~~~~~~~-----~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 129 --VEVIVGDGTLGYEE-NAPYDRIYVTAAGPDI-----PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred --eEEEECCcccCCCc-CCCcCEEEECCCcccc-----hHHHHHhhCCCcEEEEE
Confidence 78888887664432 4789999999875332 35678899999998873
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.5e-11 Score=104.99 Aligned_cols=123 Identities=18% Similarity=0.240 Sum_probs=98.6
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
+..+..+++|||||+|..++.+|. +++.+++|+||-+++..+..++ |....|. ++
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~----~~p~~~v~AIe~~~~a~~~~~~-------------------N~~~fg~-~n- 85 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWAL----AGPSGRVIAIERDEEALELIER-------------------NAARFGV-DN- 85 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHH----hCCCceEEEEecCHHHHHHHHH-------------------HHHHhCC-Cc-
Confidence 344567999999999999999996 4789999999999998877665 6666663 33
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
+.+..|++.+.|+.+. .+|.|||.|.. ..+ .-++.++.+|+|||.||+.-+.. .....+++.+.+ .|.
T Consensus 86 --~~vv~g~Ap~~L~~~~-~~daiFIGGg~-~i~--~ile~~~~~l~~ggrlV~naitl----E~~~~a~~~~~~-~g~ 153 (187)
T COG2242 86 --LEVVEGDAPEALPDLP-SPDAIFIGGGG-NIE--EILEAAWERLKPGGRLVANAITL----ETLAKALEALEQ-LGG 153 (187)
T ss_pred --EEEEeccchHhhcCCC-CCCEEEECCCC-CHH--HHHHHHHHHcCcCCeEEEEeecH----HHHHHHHHHHHH-cCC
Confidence 8999999999998765 89999999994 333 68899999999999999977765 446666666654 444
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=110.36 Aligned_cols=102 Identities=19% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|+.+..+++. +++.++|+++|.++++.+.+++ |+...+..++ +
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~---~~~~g~V~~iD~~~~~~~~a~~-------------------~l~~~~~~~~---v 126 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEA---IERRGKVYTVEIVKELAIYAAQ-------------------NIERLGYWGV---V 126 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHh---cCCCCEEEEEeCCHHHHHHHHH-------------------HHHHcCCCCc---E
Confidence 3469999999999999999985 4557899999999998887765 3333343333 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+..+++.+.++. ..+||.|++++....- .+.+++.|+|||+|++..
T Consensus 127 ~~~~~d~~~~~~~-~~~fD~Ii~~~~~~~~-----~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 127 EVYHGDGKRGLEK-HAPFDAIIVTAAASTI-----PSALVRQLKDGGVLVIPV 173 (205)
T ss_pred EEEECCcccCCcc-CCCccEEEEccCcchh-----hHHHHHhcCcCcEEEEEE
Confidence 7888887765543 4689999999875322 267889999999998854
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=112.40 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=103.8
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
..++-..+...+..+|||.|+|+|..|.+|+++ +++.|+|+++|..++..+.|++ |+.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~---v~p~G~v~t~E~~~~~~~~A~~-------------------n~~ 86 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARA---VGPTGHVYTYEFREDRAEKARK-------------------NFE 86 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHH---HTTTSEEEEEESSHHHHHHHHH-------------------HHH
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHH---hCCCeEEEccccCHHHHHHHHH-------------------HHH
Confidence 334444556666789999999999999999997 6789999999999988888876 555
Q ss_pred hhccCCcccceEeeecchh-hhhh-hcCCcEeEEEEcCCCCCCcHHHHHHHHHccC-CCCeEEEEEcCCCCCCchhHHHH
Q 041517 224 YQNAIDSVLPVPFSSGSAL-TKLC-EWGVVGDLIEIDAGHDFNSAWADINRAWRIL-RPGGVIFGHDYFTAADNRGVRRA 300 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~-~~L~-~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL-~pGGvIi~dD~~~~~~~~GV~~A 300 (327)
..|+.++ |.+...|.. +.+. .++..+|.||+|- +.+|..+..+.+.| ++||+|++- .|....|.+.
T Consensus 87 ~~gl~~~---v~~~~~Dv~~~g~~~~~~~~~DavfLDl----p~Pw~~i~~~~~~L~~~gG~i~~f----sP~ieQv~~~ 155 (247)
T PF08704_consen 87 RHGLDDN---VTVHHRDVCEEGFDEELESDFDAVFLDL----PDPWEAIPHAKRALKKPGGRICCF----SPCIEQVQKT 155 (247)
T ss_dssp HTTCCTT---EEEEES-GGCG--STT-TTSEEEEEEES----SSGGGGHHHHHHHE-EEEEEEEEE----ESSHHHHHHH
T ss_pred HcCCCCC---ceeEecceecccccccccCcccEEEEeC----CCHHHHHHHHHHHHhcCCceEEEE----CCCHHHHHHH
Confidence 5566655 888888764 3332 2346899999996 44678899999999 899999872 3667788888
Q ss_pred HHHHHHHcCCe----EEEccceEEEec
Q 041517 301 VNLFAKINGLK----VQIDGQHWVIHS 323 (327)
Q Consensus 301 v~~f~~~~gl~----v~~~gq~w~i~~ 323 (327)
++.+.+ .|+. +......|-+.+
T Consensus 156 ~~~L~~-~gf~~i~~~Evl~R~~~v~~ 181 (247)
T PF08704_consen 156 VEALRE-HGFTDIETVEVLLREWEVRP 181 (247)
T ss_dssp HHHHHH-TTEEEEEEEEEEEEEEEEET
T ss_pred HHHHHH-CCCeeeEEEEEEeeEEEEEe
Confidence 888866 4543 344566666543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=109.86 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=86.3
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
+.+.+++.| ...+..+|||||||+||.|..||+. .++|++||..++..+.|++ |
T Consensus 60 ~vA~m~~~L-~~~~g~~VLEIGtGsGY~aAvla~l------~~~V~siEr~~~L~~~A~~-------------------~ 113 (209)
T COG2518 60 MVARMLQLL-ELKPGDRVLEIGTGSGYQAAVLARL------VGRVVSIERIEELAEQARR-------------------N 113 (209)
T ss_pred HHHHHHHHh-CCCCCCeEEEECCCchHHHHHHHHH------hCeEEEEEEcHHHHHHHHH-------------------H
Confidence 344455444 4446789999999999999999996 4599999999998888876 5
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+...|..+ |.+.+||+...++. ..+||.|++.|.-+.-+ +.+++.|++||++++=
T Consensus 114 L~~lg~~n----V~v~~gDG~~G~~~-~aPyD~I~Vtaaa~~vP-----~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 114 LETLGYEN----VTVRHGDGSKGWPE-EAPYDRIIVTAAAPEVP-----EALLDQLKPGGRLVIP 168 (209)
T ss_pred HHHcCCCc----eEEEECCcccCCCC-CCCcCEEEEeeccCCCC-----HHHHHhcccCCEEEEE
Confidence 55555432 78888988776554 37999999999887777 7889999999998873
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.1e-11 Score=104.98 Aligned_cols=115 Identities=17% Similarity=0.224 Sum_probs=85.2
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++...+...+..+|||+|||+|..++.+++. .++++|++||.++.+.+.+++ |+...
T Consensus 31 ~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~----~~~~~V~~vD~s~~~~~~a~~-------------------n~~~~ 87 (196)
T PRK07402 31 LLISQLRLEPDSVLWDIGAGTGTIPVEAGLL----CPKGRVIAIERDEEVVNLIRR-------------------NCDRF 87 (196)
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHh
Confidence 3333334445679999999999999999874 457899999999999887766 33333
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+. ++ +++..+++.+.+..+...+|.+++|+.. .....++.+.++|+|||.+++..+..
T Consensus 88 ~~-~~---v~~~~~d~~~~~~~~~~~~d~v~~~~~~---~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 88 GV-KN---VEVIEGSAPECLAQLAPAPDRVCIEGGR---PIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CC-CC---eEEEECchHHHHhhCCCCCCEEEEECCc---CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 33 12 7788888877555544557899998753 33478899999999999999987754
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-11 Score=108.95 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=78.0
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|+.+..|++. .+++++|+++|.++++.+.+++ |+...+. ++
T Consensus 74 ~~~~~~~VLDiG~GsG~~a~~la~~---~~~~g~V~~vD~~~~~~~~A~~-------------------~~~~~g~-~~- 129 (215)
T TIGR00080 74 ELKPGMKVLEIGTGSGYQAAVLAEI---VGRDGLVVSIERIPELAEKAER-------------------RLRKLGL-DN- 129 (215)
T ss_pred CCCCcCEEEEECCCccHHHHHHHHH---hCCCCEEEEEeCCHHHHHHHHH-------------------HHHHCCC-CC-
Confidence 4445689999999999999999985 4557889999999999888876 3333333 22
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..+++.+.++. ..+||+|++++.... ..+.+.+.|+|||++++.
T Consensus 130 --v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~~-----~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 130 --VIVIVGDGTQGWEP-LAPYDRIYVTAAGPK-----IPEALIDQLKEGGILVMP 176 (215)
T ss_pred --eEEEECCcccCCcc-cCCCCEEEEcCCccc-----ccHHHHHhcCcCcEEEEE
Confidence 77888887765433 368999999976533 235678899999998873
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.4e-11 Score=112.10 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=81.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. +.+|+++|+++++.+.|++. +...+..++ +
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~-------------------~~~~g~~~~---v 95 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQA-------------------AEAKGVSDN---M 95 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHH-------------------HHhcCCccc---e
Confidence 4689999999999999999984 68999999999999888763 333333333 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..++..+..+..+++||+|++..... ..+....++.+.++|+|||++++..+.
T Consensus 96 ~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 96 QFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEEEcCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 7888887764334457899999876532 244567899999999999999876544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=102.26 Aligned_cols=122 Identities=18% Similarity=0.119 Sum_probs=86.6
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|..++.+++. .++.+++++|.++.+.+.+++ |+...+.. +
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~-------------------n~~~~~~~-~- 82 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQ----FPSLQVTAIERNPDALRLIKE-------------------NRQRFGCG-N- 82 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH-------------------HHHHhCCC-C-
Confidence 3345789999999999999999984 457899999999998887766 33322321 2
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
+.+..++.... +..+||+|++++.... ....++.+.+.|+|||++++++... ....+.. .+.++.|+
T Consensus 83 --i~~~~~d~~~~---~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk~gG~lv~~~~~~----~~~~~~~-~~l~~~g~ 149 (187)
T PRK08287 83 --IDIIPGEAPIE---LPGKADAIFIGGSGGN--LTAIIDWSLAHLHPGGRLVLTFILL----ENLHSAL-AHLEKCGV 149 (187)
T ss_pred --eEEEecCchhh---cCcCCCEEEECCCccC--HHHHHHHHHHhcCCCeEEEEEEecH----hhHHHHH-HHHHHCCC
Confidence 67777765432 2467999999876433 3467889999999999999977543 2233333 34555564
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-11 Score=110.47 Aligned_cols=109 Identities=18% Similarity=0.177 Sum_probs=79.8
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
+.+|+.| +..+..+|||||||+||+|..||.. .++.++|++||.++...+.|++ |+.
T Consensus 62 a~~l~~L-~l~pg~~VLeIGtGsGY~aAlla~l---vg~~g~Vv~vE~~~~l~~~A~~-------------------~l~ 118 (209)
T PF01135_consen 62 ARMLEAL-DLKPGDRVLEIGTGSGYQAALLAHL---VGPVGRVVSVERDPELAERARR-------------------NLA 118 (209)
T ss_dssp HHHHHHT-TC-TT-EEEEES-TTSHHHHHHHHH---HSTTEEEEEEESBHHHHHHHHH-------------------HHH
T ss_pred HHHHHHH-hcCCCCEEEEecCCCcHHHHHHHHh---cCccceEEEECccHHHHHHHHH-------------------HHH
Confidence 4455544 3445679999999999999999996 4678899999999988887766 333
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
..+.. .|.+..+|+...++. ..+||.|++.+.-+..+ +.|++.|++||+||+
T Consensus 119 ~~~~~----nv~~~~gdg~~g~~~-~apfD~I~v~~a~~~ip-----~~l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 119 RLGID----NVEVVVGDGSEGWPE-EAPFDRIIVTAAVPEIP-----EALLEQLKPGGRLVA 170 (209)
T ss_dssp HHTTH----SEEEEES-GGGTTGG-G-SEEEEEESSBBSS-------HHHHHTEEEEEEEEE
T ss_pred HhccC----ceeEEEcchhhcccc-CCCcCEEEEeeccchHH-----HHHHHhcCCCcEEEE
Confidence 33332 288899998776655 46899999999876555 678999999999987
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=107.45 Aligned_cols=115 Identities=14% Similarity=0.162 Sum_probs=85.7
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|..+..+++. .++.++|+++|++++|.+.|++... ....+...+
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~---~~~~~~V~gvD~S~~ml~~A~~r~~-----------------~~~~~~~~~- 128 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEK---VGSDGKVMGLDFSSEQLAVAASRQE-----------------LKAKSCYKN- 128 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHHHhh-----------------hhhhccCCC-
Confidence 3335679999999999999998874 4567899999999999998865321 000011112
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..+++.+ ++..+++||+|++. +-|..+.....+.++.+.|+|||.+++.|+..
T Consensus 129 --i~~~~~d~~~-lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 129 --IEWIEGDATD-LPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred --eEEEEccccc-CCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 7788888655 34445789999875 44555667789999999999999999999876
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=104.29 Aligned_cols=109 Identities=14% Similarity=0.158 Sum_probs=81.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .+++++|+++|+++.+.+.+++. +...+. ++ +
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~-~~---v 98 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEA---VGPEGHVIGLDFSENMLSVGRQK-------------------VKDAGL-HN---V 98 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHHH-------------------HHhcCC-Cc---e
Confidence 4579999999999999999985 56678999999999988877652 222222 12 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+++.+. +..+++||+|++... |..+.....++++.++|+|||++++.+...
T Consensus 99 ~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 99 ELVHGNAMEL-PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred EEEEechhcC-CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCC
Confidence 7777777652 333578999998754 333556678999999999999998876543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=94.64 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=76.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||.|..+..+++. . ++++++++|.++.+.+.++++ +...+.. + +
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~---~-~~~~v~~vD~s~~~~~~a~~~-------------------~~~~~~~-~---~ 71 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARL---V-PNGRVYAIERNPEALRLIERN-------------------ARRFGVS-N---I 71 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---C-CCceEEEEcCCHHHHHHHHHH-------------------HHHhCCC-c---e
Confidence 3569999999999999999984 3 358999999999988877653 2222221 2 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+..++..+.+.....+||.|++++... .....++.+.+.|+|||.+++.=
T Consensus 72 ~~~~~~~~~~~~~~~~~~D~v~~~~~~~--~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 72 VIVEGDAPEALEDSLPEPDRVFIGGSGG--LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred EEEeccccccChhhcCCCCEEEECCcch--hHHHHHHHHHHHcCCCCEEEEEe
Confidence 6666765543333446899999987542 23478999999999999998853
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=112.20 Aligned_cols=108 Identities=21% Similarity=0.205 Sum_probs=82.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|.++..+++. . +.+|++||+++.+.+.+++. ....+..++ +
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~---~--g~~v~gvD~s~~~i~~a~~~-------------------~~~~g~~~~---v 170 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARK---Y--GANVKGITLSPVQAARANAL-------------------AAAQGLSDK---V 170 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHh---c--CCEEEEEECCHHHHHHHHHH-------------------HHhcCCCCc---e
Confidence 4579999999999999999984 2 67999999999988777652 222333333 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+|+.+ ++..++.||+|+. ++.+...+....++++.++|+|||.+++.++..
T Consensus 171 ~~~~~D~~~-~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 171 SFQVADALN-QPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred EEEEcCccc-CCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 888888765 3434578999997 444445666789999999999999999887653
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=98.91 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=85.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..+..|+.. ++++.++++||.++.+.+.+++.. ...+.. + +
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~---~~~~~~i~gvD~s~~~i~~a~~~~-------------------~~~~~~-n---i 56 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKE---LNPGAKIIGVDISEEMIEYAKKRA-------------------KELGLD-N---I 56 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHH---STTTSEEEEEESSHHHHHHHHHHH-------------------HHTTST-T---E
T ss_pred CCCEEEEecCcCcHHHHHHHHh---cCCCCEEEEEECcHHHHHHhhccc-------------------cccccc-c---c
Confidence 4679999999999999999952 567899999999999998887632 222332 2 8
Q ss_pred Eeeecchhhhhhh-cCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCE-WGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~-l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++. +...||+|+..+. |........++.+.+.|++||++++.++.+
T Consensus 57 ~~~~~d~~~-l~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~ 113 (152)
T PF13847_consen 57 EFIQGDIED-LPQELEEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNH 113 (152)
T ss_dssp EEEESBTTC-GCGCSSTTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred ceEEeehhc-cccccCCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECCh
Confidence 899999888 553 2378999999864 334455578999999999999999999985
|
... |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=102.46 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=74.7
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
++..+..+|||||||+|+++..+++. .++++++|.++.+.+.++++ +...+..
T Consensus 74 l~~~~~~~VLeiG~GsG~~t~~la~~------~~~v~~vd~~~~~~~~a~~~-------------------~~~~~~~-- 126 (212)
T PRK00312 74 LELKPGDRVLEIGTGSGYQAAVLAHL------VRRVFSVERIKTLQWEAKRR-------------------LKQLGLH-- 126 (212)
T ss_pred cCCCCCCEEEEECCCccHHHHHHHHH------hCEEEEEeCCHHHHHHHHHH-------------------HHHCCCC--
Confidence 33445689999999999999988875 25899999998888777653 3222321
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.+.+..+++.+.++. .++||+|++++.... ..+.+.+.|+|||++++.-.
T Consensus 127 --~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~-----~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 127 --NVSVRHGDGWKGWPA-YAPFDRILVTAAAPE-----IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred --ceEEEECCcccCCCc-CCCcCEEEEccCchh-----hhHHHHHhcCCCcEEEEEEc
Confidence 177778876654432 368999999976532 24677899999999888543
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-09 Score=106.03 Aligned_cols=140 Identities=15% Similarity=0.060 Sum_probs=94.6
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDS 230 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~ 230 (327)
....|++||+||||.|+++..+++ .++..+|++||+++.+.+.|+++... ..+....+ ..+
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk----~~~v~~It~VEIDpeVIelAr~~~~L--------------~~~~~~~~~DpR 208 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLK----YETVLHVDLVDLDGSMINMARNVPEL--------------VSLNKSAFFDNR 208 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHh----cCCCCeEEEEeCCHHHHHHHHhcccc--------------chhccccCCCCc
Confidence 345799999999999998777666 35568999999999999999864221 11111111 223
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+++..+|+.+.+....+.||+|++|....... ..+.++.+.+.|+|||+++...-... ..+-+-..+...
T Consensus 209 ---V~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~-~~~~~~~~i~~t 284 (374)
T PRK01581 209 ---VNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPA-DAPLVYWSIGNT 284 (374)
T ss_pred ---eEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChh-hhHHHHHHHHHH
Confidence 88899999998877778999999996542211 23568899999999999988744321 112222334444
Q ss_pred HHHcCCeEE
Q 041517 305 AKINGLKVQ 313 (327)
Q Consensus 305 ~~~~gl~v~ 313 (327)
++..+..+.
T Consensus 285 L~~af~~v~ 293 (374)
T PRK01581 285 IEHAGLTVK 293 (374)
T ss_pred HHHhCCceE
Confidence 455555544
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=102.67 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=77.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .+.+|+++|+++.+.+.+++... . .++ +
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~-----~~~~v~giD~s~~~~~~a~~~~~-------------------~---~~~---i 101 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEK-----YGAHVHGVDICEKMVNIAKLRNS-------------------D---KNK---I 101 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhh-----cCCEEEEEECCHHHHHHHHHHcC-------------------c---CCc---e
Confidence 4579999999999999998863 25799999999998887765321 1 112 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEE-cCCCCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI-DAGHDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI-Da~h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++..+++||+|+. ++.+.. ......++.+.++|+|||.+++.|+..
T Consensus 102 ~~~~~D~~~-~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 102 EFEANDILK-KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEECCccc-CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 777776554 2222478999998 554322 255678999999999999999999865
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-09 Score=102.67 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=83.3
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc-cCCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN-AIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g-~~~~v~ 232 (327)
-+|++||+||||.|..+..+++ .+...+|++||+++.+.+.++++.. .+.... ...+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~----~~~~~~V~~VEid~~vv~~a~~~~~----------------~~~~~~~~d~r-- 132 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK----HPSVEKITLVEIDERVVEVCRKYLP----------------EIAGGAYDDPR-- 132 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc----CCCCCEEEEEeCCHHHHHHHHHHhH----------------HhccccccCCc--
Confidence 3689999999999999999886 3446799999999999998887532 111000 0223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+|+.+.+...+++||+|++|....+.+ ..+.++.+.++|+|||++++.-
T Consensus 133 -v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 133 -VELVIGDGIKFVAETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred -eEEEECchHHHHhhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 88899999988766567999999997543322 1355788999999999999853
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.3e-09 Score=104.54 Aligned_cols=137 Identities=18% Similarity=0.150 Sum_probs=97.4
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-Ccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI-DSV 231 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~-~~v 231 (327)
..+.++|||+|||+|.+++.++. +...+|++||.++.+.+.+++ |+...++. ++
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~-----~ga~~V~~VD~s~~al~~a~~-------------------N~~~Ngl~~~~- 272 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALM-----GGCSQVVSVDTSQEALDIARQ-------------------NVELNKLDLSK- 272 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHh-----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCCc-
Confidence 34578999999999999887654 224599999999999988876 44444443 23
Q ss_pred cceEeeecchhhhhhhc---CCcEeEEEEcCCCCCC----------cHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHH
Q 041517 232 LPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFN----------SAWADINRAWRILRPGGVIFGHDYFTAADNRGVR 298 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~----------~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~ 298 (327)
+++..+|+.+.+..+ +++||+|++|...-.. .....++.+.++|+|||+++...+...-...--.
T Consensus 273 --v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~ 350 (396)
T PRK15128 273 --AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQ 350 (396)
T ss_pred --EEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHH
Confidence 889999998877654 4689999999543111 1122345678999999999987765433333466
Q ss_pred HHHHHHHHHcCCeEEEcc
Q 041517 299 RAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~~~g 316 (327)
+.+.+.+...|.+++..+
T Consensus 351 ~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 351 KIIADAAIDAGRDVQFIE 368 (396)
T ss_pred HHHHHHHHHcCCeEEEEE
Confidence 777777888887776543
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=93.64 Aligned_cols=139 Identities=18% Similarity=0.187 Sum_probs=89.9
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+|...+...+.++|||+|||+|..++.+++. .+..+|+++|+++.+.+.+++ |+...
T Consensus 22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~----~~~~~v~~vDi~~~a~~~a~~-------------------n~~~n 78 (170)
T PF05175_consen 22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKR----GPDAKVTAVDINPDALELAKR-------------------NAERN 78 (170)
T ss_dssp HHHHHHHHHTTCEEEEETSTTSHHHHHHHHT----STCEEEEEEESBHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHHhhccCCeEEEecCChHHHHHHHHHh----CCCCEEEEEcCCHHHHHHHHH-------------------HHHhc
Confidence 4433334447889999999999999999983 557789999999988887766 44443
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CC-----CcHHHHHHHHHccCCCCeEEEE-EcCCCCCCchhHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DF-----NSAWADINRAWRILRPGGVIFG-HDYFTAADNRGVR 298 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~-----~~v~~dl~~~~~lL~pGGvIi~-dD~~~~~~~~GV~ 298 (327)
+..+ +.+...|..+.++ +.+||+|+.+--. .. ......++.+.++|+|||.+++ .... .+.+
T Consensus 79 ~~~~----v~~~~~d~~~~~~--~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~-----~~~~ 147 (170)
T PF05175_consen 79 GLEN----VEVVQSDLFEALP--DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH-----LGYE 147 (170)
T ss_dssp TCTT----EEEEESSTTTTCC--TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT-----SCHH
T ss_pred Cccc----ccccccccccccc--ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC-----CChH
Confidence 4322 6677777666443 4799999997421 11 1235568899999999997744 2222 2456
Q ss_pred HHHHHHHHHcCCeEEEccceEE
Q 041517 299 RAVNLFAKINGLKVQIDGQHWV 320 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~~~gq~w~ 320 (327)
+.+++.+. ..++......|.
T Consensus 148 ~~l~~~f~--~~~~~~~~~~~~ 167 (170)
T PF05175_consen 148 RLLKELFG--DVEVVAKNKGFR 167 (170)
T ss_dssp HHHHHHHS----EEEEEESSEE
T ss_pred HHHHHhcC--CEEEEEECCCEE
Confidence 66666655 444444333333
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=98.92 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=90.2
Q ss_pred HHHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
...+..|.+.. +..+|||||||+|..++.+++ .+ ..+|+++|+++.+.+.+++ |+
T Consensus 107 ~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~----~g-~~~v~giDis~~~l~~A~~-------------------n~ 162 (250)
T PRK00517 107 RLCLEALEKLVLPGKTVLDVGCGSGILAIAAAK----LG-AKKVLAVDIDPQAVEAARE-------------------NA 162 (250)
T ss_pred HHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHH----cC-CCeEEEEECCHHHHHHHHH-------------------HH
Confidence 34455554433 578999999999999887765 34 3469999999999888876 33
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~ 302 (327)
...+..+. +.+..++ .+||+|+.+... +.....+..+.++|+|||++++.++... -...+.
T Consensus 163 ~~~~~~~~---~~~~~~~---------~~fD~Vvani~~--~~~~~l~~~~~~~LkpgG~lilsgi~~~-----~~~~v~ 223 (250)
T PRK00517 163 ELNGVELN---VYLPQGD---------LKADVIVANILA--NPLLELAPDLARLLKPGGRLILSGILEE-----QADEVL 223 (250)
T ss_pred HHcCCCce---EEEccCC---------CCcCEEEEcCcH--HHHHHHHHHHHHhcCCCcEEEEEECcHh-----hHHHHH
Confidence 33333222 3333221 269999986543 3345678899999999999999887752 234555
Q ss_pred HHHHHcCCeEE--EccceEEE
Q 041517 303 LFAKINGLKVQ--IDGQHWVI 321 (327)
Q Consensus 303 ~f~~~~gl~v~--~~gq~w~i 321 (327)
..+...|+++. .....|+.
T Consensus 224 ~~l~~~Gf~~~~~~~~~~W~~ 244 (250)
T PRK00517 224 EAYEEAGFTLDEVLERGEWVA 244 (250)
T ss_pred HHHHHCCCEEEEEEEeCCEEE
Confidence 66677887754 23445653
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=98.28 Aligned_cols=139 Identities=12% Similarity=0.063 Sum_probs=88.7
Q ss_pred HHHHHHHH--HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 143 YGAVFGNL--IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 143 ~g~lL~~L--~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
...+|..+ +...+..+|||+|||+|..+..+++. .+ .++|+++|.+++|.+...+.
T Consensus 58 ~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~---v~-~g~V~avD~~~~ml~~l~~~------------------ 115 (226)
T PRK04266 58 AAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDI---VE-EGVVYAVEFAPRPMRELLEV------------------ 115 (226)
T ss_pred HHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHh---cC-CCeEEEEECCHHHHHHHHHH------------------
Confidence 34455544 33334569999999999999999985 44 78999999999887644331
Q ss_pred HHhhhccCCcccceEeeecchhhhh--hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE------EcCCCCC
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKL--CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG------HDYFTAA 292 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L--~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~------dD~~~~~ 292 (327)
.... .. |.+..+++.+.. ..+..+||+||.|..... .....++++.+.|+|||.+++ .|+...+
T Consensus 116 -a~~~---~n---v~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~-~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~ 187 (226)
T PRK04266 116 -AEER---KN---IIPILADARKPERYAHVVEKVDVIYQDVAQPN-QAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP 187 (226)
T ss_pred -hhhc---CC---cEEEECCCCCcchhhhccccCCEEEECCCChh-HHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH
Confidence 1110 11 555566654311 122356999999865421 222358999999999999998 6665532
Q ss_pred CchhHHHHHHHHHHHcCCeEE
Q 041517 293 DNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 ~~~GV~~Av~~f~~~~gl~v~ 313 (327)
....+-....++..|+++.
T Consensus 188 --~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 188 --KEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred --HHHHHHHHHHHHHcCCeEE
Confidence 1112223355666787754
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-10 Score=87.50 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=69.6
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
||||||+|..+..+++. +..+++++|+++++.+.+++... .. . +.+..+
T Consensus 1 LdiG~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~~~~~~~-------------------~~----~---~~~~~~ 49 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----GGASVTGIDISEEMLEQARKRLK-------------------NE----G---VSFRQG 49 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----TTCEEEEEES-HHHHHHHHHHTT-------------------TS----T---EEEEES
T ss_pred CEecCcCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHhccc-------------------cc----C---chheee
Confidence 79999999999999983 58999999999998877665321 11 1 446667
Q ss_pred chhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEE
Q 041517 240 SALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 240 da~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+ ++..+++||+|+.-....+ +.....++++.+.|||||++++
T Consensus 50 d~~~-l~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 50 DAED-LPFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp BTTS-SSS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred hHHh-CccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 6555 3555789999997765433 5777899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=98.28 Aligned_cols=110 Identities=15% Similarity=0.033 Sum_probs=73.3
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++.. +....+++|||+|||+|..++++|+. +.+|+++|+++.+.+.+++.. ...
T Consensus 22 l~~~-~~~~~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~-------------------~~~ 75 (195)
T TIGR00477 22 VREA-VKTVAPCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMK-------------------ARE 75 (195)
T ss_pred HHHH-hccCCCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHH-------------------HHh
Confidence 4443 34556899999999999999999973 579999999999888765522 111
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+. ++.....+... + .++.+||+|+.-.. |.. +.....++.+.++|+|||++++-++
T Consensus 76 ~~-----~v~~~~~d~~~-~-~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 76 NL-----PLRTDAYDINA-A-ALNEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CC-----CceeEeccchh-c-cccCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 22 13333343322 1 12457999986432 322 2345788999999999998554433
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.6e-09 Score=92.55 Aligned_cols=132 Identities=15% Similarity=0.081 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.+|...+...++++|||+|||+|..+..+++. + .+|+++|.++.+.+.+++ |+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~-------------------~~~~ 63 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGK----G--KCILTTDINPFAVKELRE-------------------NAKL 63 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc----C--CEEEEEECCHHHHHHHHH-------------------HHHH
Confidence 45555555667889999999999999999973 2 389999999999887766 3322
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-CC---------------------cHHHHHHHHHccCCCCeE
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-FN---------------------SAWADINRAWRILRPGGV 282 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~---------------------~v~~dl~~~~~lL~pGGv 282 (327)
.+. .+++..++..+.+ .++||+|+.+...- .. .....++.+.++|+|||.
T Consensus 64 ~~~-----~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 64 NNV-----GLDVVMTDLFKGV---RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred cCC-----ceEEEEccccccc---CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 222 1666667655432 35899999874321 00 023468888999999998
Q ss_pred EEEEcCCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 283 IFGHDYFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 283 Ii~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
+++-+... .+..+. .+++++.|+++..
T Consensus 136 ~~~~~~~~----~~~~~~-~~~l~~~gf~~~~ 162 (179)
T TIGR00537 136 VQLIQSSL----NGEPDT-FDKLDERGFRYEI 162 (179)
T ss_pred EEEEEecc----CChHHH-HHHHHhCCCeEEE
Confidence 88765443 233333 4444666777654
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=106.60 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+++..++...+..+|||+|||.|..|+++++. ++++++|+++|+++.+.+.+++ |+..
T Consensus 227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~---~~~~g~V~a~Dis~~rl~~~~~-------------------n~~r 284 (431)
T PRK14903 227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAEL---MKDQGKILAVDISREKIQLVEK-------------------HAKR 284 (431)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH---cCCCCEEEEEECCHHHHHHHHH-------------------HHHH
Confidence 44454555555679999999999999999985 5567899999999998887765 4444
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCe
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGG 281 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGG 281 (327)
.|.. . +.+..+|+.+......++||.|++|+--.... ..+.|+.++++|+|||
T Consensus 285 ~g~~-~---v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG 360 (431)
T PRK14903 285 LKLS-S---IEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGG 360 (431)
T ss_pred cCCC-e---EEEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4442 2 77778887653223357899999996542211 1345789999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHH-cCCeE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKI-NGLKV 312 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~-~gl~v 312 (327)
+++...+...+ ..-.+.|+.|.+. +++.+
T Consensus 361 ~LvYsTCs~~~--eEne~vv~~fl~~~~~~~~ 390 (431)
T PRK14903 361 ILLYSTCTVTK--EENTEVVKRFVYEQKDAEV 390 (431)
T ss_pred EEEEEECCCCh--hhCHHHHHHHHHhCCCcEE
Confidence 99999998742 2233555556553 34543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=99.59 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=81.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..++.+++. .++.++|+++|.++.+.+.++++ ....+. ++ +
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~---~g~~~~v~gvD~s~~~l~~A~~~-------------------~~~~g~-~~---v 130 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARR---VGPTGKVIGVDMTPEMLAKARAN-------------------ARKAGY-TN---V 130 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---hCCCCEEEEECCCHHHHHHHHHH-------------------HHHcCC-CC---E
Confidence 4679999999999998887774 56678999999999999888763 222222 12 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++..++.||+|+.... |..+.....+++++++|+|||++++.|+..
T Consensus 131 ~~~~~d~~~-l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~ 186 (272)
T PRK11873 131 EFRLGEIEA-LPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVL 186 (272)
T ss_pred EEEEcchhh-CCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 777777644 3433468999998754 323445678999999999999999988764
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.03 E-value=6e-09 Score=95.91 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=78.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++.+ ..++.+++++|+++.|.+.+++. +...+...+ +
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~--~~p~~~v~gvD~s~~ml~~a~~~-------------------~~~~~~~~~---v 108 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI--NQPNVKIIGIDNSQPMVERCRQH-------------------IAAYHSEIP---V 108 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc--CCCCCeEEEEeCCHHHHHHHHHH-------------------HHhcCCCCC---e
Confidence 35689999999999999999852 13589999999999999888763 222222222 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..++..+. +. ..+|+|++... |-. ......++.+.+.|+|||++++.|...
T Consensus 109 ~~~~~d~~~~-~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 109 EILCNDIRHV-EI--KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred EEEECChhhC-CC--CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 7778877653 21 35788876543 212 123567899999999999999999876
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=97.20 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=87.9
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
++|||||||+|..+..+++. . ++.+++++|+++++.+.+++ ++...++.++ +.+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~---~-~~~~v~gid~s~~~~~~a~~-------------------~~~~~gl~~~---i~~ 54 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAER---H-PHLQLHGYTISPEQAEVGRE-------------------RIRALGLQGR---IRI 54 (224)
T ss_pred CeEEEECCCCCHHHHHHHHH---C-CCCEEEEEECCHHHHHHHHH-------------------HHHhcCCCcc---eEE
Confidence 47999999999999999884 2 46799999999888777665 3333344444 677
Q ss_pred eecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC---C--------chhHHHHHHHH
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYFTAA---D--------NRGVRRAVNLF 304 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~---~--------~~GV~~Av~~f 304 (327)
..+|..+. + ..++||+|+.-. .+........++.+.++|+|||.+++.++.... . .+. ..-+..+
T Consensus 55 ~~~d~~~~-~-~~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~ 131 (224)
T smart00828 55 FYRDSAKD-P-FPDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVT-REEWAEL 131 (224)
T ss_pred EecccccC-C-CCCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCC-HHHHHHH
Confidence 77665432 1 245899999643 222344568899999999999999998875310 0 111 2335556
Q ss_pred HHHcCCeEE
Q 041517 305 AKINGLKVQ 313 (327)
Q Consensus 305 ~~~~gl~v~ 313 (327)
+...|+++.
T Consensus 132 l~~~Gf~~~ 140 (224)
T smart00828 132 LARNNLRVV 140 (224)
T ss_pred HHHCCCeEE
Confidence 677888764
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=97.13 Aligned_cols=107 Identities=14% Similarity=0.030 Sum_probs=73.9
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+....+++|||+|||+|..+++||+. +.+|+++|+++.+.+.+++. +...+..
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~-------------------~~~~~~~-- 78 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERI-------------------KAAENLD-- 78 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHH-------------------HHHcCCC--
Confidence 34556789999999999999999983 57999999999998877653 2222221
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCC-CC--CCcHHHHHHHHHccCCCCeEEE-EEcC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HD--FNSAWADINRAWRILRPGGVIF-GHDY 288 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~--~~~v~~dl~~~~~lL~pGGvIi-~dD~ 288 (327)
.+.+..++..+. .++++||+|+.-.. |- .......++.+.++|+|||+++ +..+
T Consensus 79 --~v~~~~~d~~~~--~~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 79 --NLHTAVVDLNNL--TFDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred --cceEEecChhhC--CcCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 145555554332 23467999986543 21 1234577899999999999854 4433
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.7e-09 Score=96.91 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++.+ ..++.++++||+++.|.+.+++. +...+...+ +
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~--~~~~~~v~gvD~S~~ml~~A~~~-------------------~~~~~~~~~---v 111 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNI--HHDNCKIIAIDNSPAMIERCRRH-------------------IDAYKAPTP---V 111 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhc--CCCCCeEEEEeCCHHHHHHHHHH-------------------HHhcCCCCC---e
Confidence 45799999999999999988742 24688999999999999988763 322233223 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +. ..+|+|+.... |-. ......++.+.+.|+|||.+++.|...
T Consensus 112 ~~~~~d~~~~-~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 112 DVIEGDIRDI-AI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred EEEeCChhhC-CC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 7788876653 21 35888886532 211 123467899999999999999988664
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.1e-09 Score=105.27 Aligned_cols=141 Identities=12% Similarity=0.111 Sum_probs=96.3
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..++...+..+|||+|||.|..++.+++. +++.++|+++|+++.+.+.+++ |+..
T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~---~~~~~~v~avDi~~~~l~~~~~-------------------n~~~ 297 (444)
T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAEL---LKNTGKVVALDIHEHKLKLIEE-------------------NAKR 297 (444)
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHH---hCCCCEEEEEeCCHHHHHHHHH-------------------HHHH
Confidence 45555555545679999999999999999985 4557899999999988877765 4444
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCe
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGG 281 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGG 281 (327)
.|.. . |.+..+|+.+....+.+.||+|++|+...... ....++.+.++|+|||
T Consensus 298 ~g~~-~---v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG 373 (444)
T PRK14902 298 LGLT-N---IETKALDARKVHEKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGG 373 (444)
T ss_pred cCCC-e---EEEEeCCcccccchhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4442 1 77888887664333346899999997522111 1245888999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
.++...+...+ ..-...+..|.+.+ .+++.
T Consensus 374 ~lvystcs~~~--~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 374 ILVYSTCTIEK--EENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred EEEEEcCCCCh--hhhHHHHHHHHHhCCCcEEe
Confidence 99987766522 11223455555554 35543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-09 Score=100.28 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=82.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+...+|||||||.|..+..||+. +..|+++|..+...+.|+..+. ..+. .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~-------------------e~gv-----~ 107 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHAL-------------------ESGV-----N 107 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhh-------------------hccc-----c
Confidence 45789999999999999999995 6999999999999999886432 1111 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
++.....+.+ |...+++||+|.+ +--.-.+.+...+..+.+++||||++++..++++
T Consensus 108 i~y~~~~~ed-l~~~~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 108 IDYRQATVED-LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred ccchhhhHHH-HHhcCCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 4444444444 3444589999985 4433356677889999999999999999999873
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.7e-09 Score=98.31 Aligned_cols=122 Identities=15% Similarity=0.043 Sum_probs=84.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+|||+|..++.+++. .++.+++++|+++.+.+.|++ |+...+..++ +
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~----~~~~~v~avDis~~al~~A~~-------------------n~~~~~~~~~---i 174 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYA----FPEAEVDAVDISPDALAVAEI-------------------NIERHGLEDR---V 174 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---E
Confidence 3579999999999999999984 347899999999999988877 4433344334 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCC-------------CCCc-------------HHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGH-------------DFNS-------------AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h-------------~~~~-------------v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.+..+|..+.++ +.+||+|+.|--. .+++ ...-++.+.++|+|||++++.-.
T Consensus 175 ~~~~~D~~~~~~--~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 175 TLIQSDLFAALP--GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred EEEECchhhccC--CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 888888765443 3579999986210 0111 13346788899999999987543
Q ss_pred CCCCCchhHHHHHHHHHHHcCCe
Q 041517 289 FTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 289 ~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
.. . ..+.+.+...++.
T Consensus 253 ~~------~-~~v~~~~~~~~~~ 268 (284)
T TIGR03533 253 NS------M-EALEEAYPDVPFT 268 (284)
T ss_pred cC------H-HHHHHHHHhCCCc
Confidence 22 1 3555565655543
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=98.27 Aligned_cols=101 Identities=15% Similarity=0.094 Sum_probs=74.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.+.+|||||||+|..+..++.. +.+++++|+++.+.+.+++... . +
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~-------------------~---------~ 87 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA-------------------A---------D 87 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC-------------------C---------C
Confidence 4689999999999998888762 6899999999998887655211 0 2
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+|..+ ++..+++||+|+...... .+.....+.++.+.|+|||++++.....
T Consensus 88 ~~~~~d~~~-~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 88 HYLAGDIES-LPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CEEEcCccc-CcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 334455433 333356899999875433 2456678999999999999999987664
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-09 Score=99.51 Aligned_cols=110 Identities=20% Similarity=0.148 Sum_probs=83.9
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
-+|++||+||||.|..+..+++ .+...+|+.||+++.+.+.+++++. .+. .++ +.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk----~~~v~~V~~VEiD~~Vi~~ar~~f~----------------~~~-~~~~dpR-- 146 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIAR----HSSVEQIDICEIDKMVIDVSKKFFP----------------DLA-VGFDDPR-- 146 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHh----CCCCCeEEEEECCHHHHHHHHHhhh----------------hhc-cccCCCc--
Confidence 4689999999999999998887 3446799999999999998887542 111 112 224
Q ss_pred ceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+|+.+.+... +++||+|++|+.....+ ....++.+.++|+|||+++..-
T Consensus 147 -v~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 147 -VNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred -eEEEEChHHHHHhhccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 889999998877665 57899999998654322 2356889999999999998753
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-09 Score=99.10 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=75.3
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. .++.+|++||+++.+.+.+++... .
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~i~~a~~~~~-------------------------~--- 77 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVER----WPAARITGIDSSPAMLAEARSRLP-------------------------D--- 77 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhCC-------------------------C---
Confidence 35689999999999999999984 347899999999998887765211 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..++..+.. ...+||+|+...... .......++.+.+.|+|||++++.
T Consensus 78 ~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 78 CQFVEADIASWQ--PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CeEEECchhccC--CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 556666654432 235899999886643 345567899999999999999885
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=1e-08 Score=97.53 Aligned_cols=104 Identities=15% Similarity=0.077 Sum_probs=74.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+++ ++ ..+|+++|+++.+.+.++++ +...+..++ +
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~----~g-~~~V~avDid~~al~~a~~n-------------------~~~n~~~~~---~ 211 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALK----LG-AAKVVGIDIDPLAVESARKN-------------------AELNQVSDR---L 211 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHH----cC-CCeEEEEECCHHHHHHHHHH-------------------HHHcCCCcc---e
Confidence 468999999999999988776 33 46999999999999888763 333333333 3
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++.. ....++||+|+.+... ......+..+.+.|+|||.+++..+..
T Consensus 212 ~~~~~~~~---~~~~~~fDlVvan~~~--~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 212 QVKLIYLE---QPIEGKADVIVANILA--EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred EEEecccc---cccCCCceEEEEecCH--HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 44333311 1224689999987543 334567889999999999999988875
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=108.03 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=92.6
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI- 228 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~- 228 (327)
+.+..+.++|||+|||+|.+++++|.. + ..+|++||.++.+.+.+++ |+...++.
T Consensus 533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~----G-a~~V~~vD~s~~al~~a~~-------------------N~~~ng~~~ 588 (702)
T PRK11783 533 IGQMAKGKDFLNLFAYTGTASVHAALG----G-AKSTTTVDMSNTYLEWAER-------------------NFALNGLSG 588 (702)
T ss_pred HHHhcCCCeEEEcCCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHH-------------------HHHHhCCCc
Confidence 344456789999999999999999973 2 3479999999999998877 44444443
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCC---C---------CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD---F---------NSAWADINRAWRILRPGGVIFGHDYFTAADNRG 296 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---~---------~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G 296 (327)
++ +++..+|..+.+..++++||+|++|-..- . ......++.+.++|+|||++++..... .
T Consensus 589 ~~---v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-----~ 660 (702)
T PRK11783 589 RQ---HRLIQADCLAWLKEAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-----G 660 (702)
T ss_pred cc---eEEEEccHHHHHHHcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-----c
Confidence 34 89999999887766678999999995310 0 012234667788999999998865543 1
Q ss_pred HHHHHHHHHHHcCCeEEE
Q 041517 297 VRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 297 V~~Av~~f~~~~gl~v~~ 314 (327)
+... ...+...|++++.
T Consensus 661 ~~~~-~~~~~~~g~~~~~ 677 (702)
T PRK11783 661 FKMD-EEGLAKLGLKAEE 677 (702)
T ss_pred CChh-HHHHHhCCCeEEE
Confidence 2222 3344455666554
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.1e-09 Score=94.45 Aligned_cols=105 Identities=15% Similarity=0.091 Sum_probs=77.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|.+++.+|+. .++..++++|.++.+.+.+++ ++...++. + +
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~----~p~~~v~gvD~~~~~l~~a~~-------------------~~~~~~l~-n---i 68 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQ----NPDKNFLGIEIHTPIVLAANN-------------------KANKLGLK-N---L 68 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHH-------------------HHHHhCCC-C---E
Confidence 4579999999999999999984 458899999999998887765 23333332 2 8
Q ss_pred Eeeecchhhhhhhc--CCcEeEEEEcCCCCCCcH---------HHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSA---------WADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v---------~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+++.+.+... ++.+|.|+++-...+... ...++.+.+.|+|||.+++.
T Consensus 69 ~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 69 HVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 88899988755432 358999999753222111 25689999999999988763
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=99.54 Aligned_cols=98 Identities=16% Similarity=0.021 Sum_probs=74.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++.+|||||||+|..+..+++. .++.+|+++|+++.|.+.+++. +
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~----~p~~~v~gvD~s~~~~~~a~~~------------------~------------ 73 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARR----WPGAVIEALDSSPEMVAAARER------------------G------------ 73 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHhc------------------C------------
Confidence 35689999999999999999884 3578999999999888766431 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+++.+. . ..++||+|+.... |-.+.....++.+.+.|+|||.+++..
T Consensus 74 ~~~~~~d~~~~-~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 74 VDARTGDVRDW-K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CcEEEcChhhC-C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 45566776543 2 2468999998764 323455678999999999999998853
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=102.41 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++...+..+|||+|||+|..|+++++. ++..++|+++|.++.+.+.+++ |+...
T Consensus 241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~---~~~~~~V~avD~s~~~l~~~~~-------------------~~~~~ 298 (445)
T PRK14904 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAEL---MQNRGQITAVDRYPQKLEKIRS-------------------HASAL 298 (445)
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHH---hCCCcEEEEEECCHHHHHHHHH-------------------HHHHh
Confidence 3334444445579999999999999999986 3456899999999999887766 44444
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCeE
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGGV 282 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGGv 282 (327)
|.. . |.+..+|+.+..+ +.+||.|++|+-..... ....++.+.++|+|||+
T Consensus 299 g~~-~---v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 299 GIT-I---IETIEGDARSFSP--EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred CCC-e---EEEEeCccccccc--CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 432 2 7777888766432 36899999995321111 12358899999999999
Q ss_pred EEEEcCCCCCCchhHHHHHHHHHHHc-CCeE
Q 041517 283 IFGHDYFTAADNRGVRRAVNLFAKIN-GLKV 312 (327)
Q Consensus 283 Ii~dD~~~~~~~~GV~~Av~~f~~~~-gl~v 312 (327)
+++..+...+. .=..-|+.|.+.+ ++.+
T Consensus 373 lvystcs~~~~--Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 373 LVYATCSIEPE--ENELQIEAFLQRHPEFSA 401 (445)
T ss_pred EEEEeCCCChh--hHHHHHHHHHHhCCCCEE
Confidence 99999887431 1123345555544 3443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=102.41 Aligned_cols=141 Identities=17% Similarity=0.187 Sum_probs=96.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+++..++...+..+|||+|||.|..|+.|++. ++..++|+++|.++.+.+.+++ |+..
T Consensus 242 ~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~---~~~~g~v~a~D~~~~rl~~~~~-------------------n~~r 299 (434)
T PRK14901 242 QLVAPLLDPQPGEVILDACAAPGGKTTHIAEL---MGDQGEIWAVDRSASRLKKLQE-------------------NAQR 299 (434)
T ss_pred HHHHHHhCCCCcCEEEEeCCCCchhHHHHHHH---hCCCceEEEEcCCHHHHHHHHH-------------------HHHH
Confidence 34444444445679999999999999999985 4557899999999988877665 4444
Q ss_pred hccCCcccceEeeecchhhhhh---hcCCcEeEEEEcCCCCC-------Cc----------------HHHHHHHHHccCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLC---EWGVVGDLIEIDAGHDF-------NS----------------AWADINRAWRILR 278 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~---~l~~~fDLIfIDa~h~~-------~~----------------v~~dl~~~~~lL~ 278 (327)
.|.. .|.+..+|+.+... ...+.||.|++|+..+. +. -.+-++.++++|+
T Consensus 300 ~g~~----~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk 375 (434)
T PRK14901 300 LGLK----SIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK 375 (434)
T ss_pred cCCC----eEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4542 27777888766421 22468999999964221 11 1345889999999
Q ss_pred CCeEEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 279 PGGVIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 279 pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
|||.|+...+...+ ..-..-|..|++++ ++++.
T Consensus 376 pgG~lvystcsi~~--~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 376 PGGTLVYATCTLHP--AENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred CCCEEEEEeCCCCh--hhHHHHHHHHHHhCCCcEec
Confidence 99999998877633 12234455565554 55544
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-09 Score=97.45 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=81.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
.+|++|||||||.|..+..+++. ++..+++++|+++.+.+.++++.. ... ... ..+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~----~~~~~v~~veid~~vi~~a~~~~~----------------~~~-~~~~~~~-- 127 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKH----KSVEKATLVDIDEKVIELSKKFLP----------------SLA-GSYDDPR-- 127 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhC----CCcceEEEEeCCHHHHHHHHHHhH----------------hhc-ccccCCc--
Confidence 45789999999999998887763 346789999999999888876431 111 001 112
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~d 286 (327)
+++..+|+.+.+....++||+|++|......+ ..+.++.+.++|+|||++++.
T Consensus 128 -v~i~~~D~~~~l~~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 128 -VDLQIDDGFKFLADTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred -eEEEECchHHHHHhCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 67778888887766678999999998633221 346688999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=84.53 Aligned_cols=102 Identities=20% Similarity=0.107 Sum_probs=77.0
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||+|||+|..++.+++. + ..+++++|+++...+.+++ |+...+..++ +++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~----~-~~~~~gvdi~~~~~~~a~~-------------------~~~~~~~~~~---~~~ 54 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRR----G-AARVTGVDIDPEAVELARR-------------------NLPRNGLDDR---VEV 54 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHH----C-TCEEEEEESSHHHHHHHHH-------------------HCHHCTTTTT---EEE
T ss_pred CEEEEcCcchHHHHHHHHHH----C-CCeEEEEEECHHHHHHHHH-------------------HHHHccCCce---EEE
Confidence 58999999999999999985 3 6899999999998888776 3344444445 889
Q ss_pred eecchhhhhhhc-CCcEeEEEEcCCCCC---------CcHHHHHHHHHccCCCCeEEEE
Q 041517 237 SSGSALTKLCEW-GVVGDLIEIDAGHDF---------NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 237 ~~gda~~~L~~l-~~~fDLIfIDa~h~~---------~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
..+|..+....+ .++||+|+.|-.... ......++.+.++|+|||++++
T Consensus 55 ~~~D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 55 IVGDARDLPEPLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EESHHHHHHHTCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECchhhchhhccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 999988876333 589999999844221 1234568999999999998876
|
... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=3e-09 Score=96.19 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=116.0
Q ss_pred CCCCcCCCccccccccCcCCCChHHHHHHHH---HhhcCC----CCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhh
Q 041517 81 LPPSLLDNFRVTTRCAADSVPPQLVRQTIID---RIFNGT----SPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDK 153 (327)
Q Consensus 81 ~~~~~~d~~~~~~~~~~~~~~~~~v~~~~l~---~~f~~~----s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~ 153 (327)
.+-.-+|+-+ .. ..|..+.+.+++.+ ..|.-. |||.+.|....- ...+....+...+|+.|-..
T Consensus 9 ~n~~LId~L~----~~-~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~----n~~iSAp~mha~~le~L~~~ 79 (237)
T KOG1661|consen 9 DNDDLIDNLR----EN-KIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGY----NLTISAPHMHATALEYLDDH 79 (237)
T ss_pred chHHHHHHHH----hc-chhHHHHHHHHHHhhchhhccccccccCCCCCCccccCC----ceEEcchHHHHHHHHHHHHh
Confidence 3344566666 55 77888888888765 223333 677777755421 11222334567788888666
Q ss_pred cCC-CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRP-RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p-~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+.| .+.|+||+|+||.+.++|+++ .++++..++||.-++..+.++++.+....+.+. . . .+ ..+ +
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mv--g~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~--~-~---~~-~~~---~-- 145 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMV--GATGGNVHGIEHIPELVEYSKKNLDKDITTSES--S-S---KL-KRG---E-- 145 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHh--cCCCccccchhhhHHHHHHHHHHHHhhccCchh--h-h---hh-ccC---c--
Confidence 655 589999999999999999884 244555599999999888887754322211111 0 0 01 111 1
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.+..||.....++ ..+||-||+.|+-+..+ +.++..|++||.|++
T Consensus 146 -l~ivvGDgr~g~~e-~a~YDaIhvGAaa~~~p-----q~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 146 -LSIVVGDGRKGYAE-QAPYDAIHVGAAASELP-----QELLDQLKPGGRLLI 191 (237)
T ss_pred -eEEEeCCccccCCc-cCCcceEEEccCccccH-----HHHHHhhccCCeEEE
Confidence 67778888775444 47999999998865544 889999999998877
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.6e-09 Score=100.55 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=78.7
Q ss_pred HHHHHHHhh---cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDK---VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~---~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+++. .+..+|||||||+|+.++.+++. .+..++|+++|.++++.+.|++ +
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~---~~~~g~VvgVDis~~~l~~Ar~-------------------~ 124 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRV---VGEKGLVVSVEYSRKICEIAKR-------------------N 124 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHh---cCCCCEEEEEECCHHHHHHHHH-------------------H
Confidence 344444443 24579999999999999999985 4445789999999999888776 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+...+. ++ +.+..+|+.+.++.. .+||+|++++.... -.+.+.+.|+|||.+++.
T Consensus 125 l~~~g~-~n---V~~i~gD~~~~~~~~-~~fD~Ii~~~g~~~-----ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 125 VRRLGI-EN---VIFVCGDGYYGVPEF-APYDVIFVTVGVDE-----VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred HHHcCC-Cc---EEEEeCChhhccccc-CCccEEEECCchHH-----hHHHHHHhcCCCCEEEEE
Confidence 333333 22 677788876654432 57999999876432 235678899999988774
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.6e-09 Score=98.19 Aligned_cols=102 Identities=16% Similarity=0.053 Sum_probs=72.5
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...++++|||||||+|..++.+++. +.+|+++|.++.+.+.+++. ....++
T Consensus 117 ~~~~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~-------------------~~~~~l---- 167 (287)
T PRK12335 117 QTVKPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEI-------------------AEKENL---- 167 (287)
T ss_pred hccCCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHH-------------------HHHcCC----
Confidence 4457889999999999999999973 67999999999988877652 222222
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCC-C--CCCcHHHHHHHHHccCCCCeEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAG-H--DFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h--~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.+++...|..+. .++++||+|+.-.. | ..+.....++.+.++|+|||++++
T Consensus 168 -~v~~~~~D~~~~--~~~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 168 -NIRTGLYDINSA--SIQEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred -ceEEEEechhcc--cccCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 155555554331 23578999987643 2 112345678999999999998554
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.8e-08 Score=92.54 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=89.7
Q ss_pred HHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 149 NLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 149 ~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
.++...+..+|||+|||.|..|+.+|+. ++..+.|+++|.++.+.+.+++ |+...+..
T Consensus 65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~---~~~~g~v~a~D~~~~~l~~~~~-------------------n~~~~g~~ 122 (264)
T TIGR00446 65 LALEPDPPERVLDMAAAPGGKTTQISAL---MKNEGAIVANEFSKSRTKVLIA-------------------NINRCGVL 122 (264)
T ss_pred HHhCCCCcCEEEEECCCchHHHHHHHHH---cCCCCEEEEEcCCHHHHHHHHH-------------------HHHHcCCC
Confidence 3334334578999999999999999986 4556899999999998877665 44444432
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC-----------------------cHHHHHHHHHccCCCCeEEEE
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN-----------------------SAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~-----------------------~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.|.+..+|+.+. ......||.|++|+-.... .....|+.++++|+|||+|+.
T Consensus 123 ----~v~~~~~D~~~~-~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 123 ----NVAVTNFDGRVF-GAAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred ----cEEEecCCHHHh-hhhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 267777777653 3334569999999643321 113468889999999999998
Q ss_pred EcCCCCCCchhHHHHHHHHHHHc
Q 041517 286 HDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 286 dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
..+-..+ ..=.+.++.|.+.+
T Consensus 198 stcs~~~--~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 198 STCSLEP--EENEAVVDYLLEKR 218 (264)
T ss_pred EeCCCCh--HHHHHHHHHHHHhC
Confidence 8776532 11133445555543
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=90.78 Aligned_cols=112 Identities=20% Similarity=0.163 Sum_probs=80.0
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+...++.+|||+|||+|..+..+++. .++.++++++|+++.+.+.+++... .....
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~---~~~~~~v~~~d~~~~~~~~a~~~~~---------------------~~~~~ 70 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARR---VGPEGRVVGIDRSEAMLALAKERAA---------------------GLGPN 70 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHhh---------------------CCCCc
Confidence 34445689999999999999999985 4567899999999988877665210 01111
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ ++..+..||+|+..... ........++.+.+.|+|||.|++.++.+
T Consensus 71 ---~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 127 (241)
T PRK08317 71 ---VEFVRGDADG-LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDW 127 (241)
T ss_pred ---eEEEeccccc-CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 6666665443 22224789999987543 22445678999999999999999887653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-09 Score=85.55 Aligned_cols=97 Identities=24% Similarity=0.185 Sum_probs=68.4
Q ss_pred EEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeee
Q 041517 159 IIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSS 238 (327)
Q Consensus 159 VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~ 238 (327)
|||+|||+|..+..+++.+ ..++..+++++|+++.+.+.+++... ..+. ++++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~-------------------~~~~-----~~~~~~ 55 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFS-------------------EDGP-----KVRFVQ 55 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSH-------------------HTTT-----TSEEEE
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhch-------------------hcCC-----ceEEEE
Confidence 7999999999999999964 22445899999999999988876431 1122 278888
Q ss_pred cchhhhhhhcCCcEeEEEE-cC--CCCC-CcHHHHHHHHHccCCCCe
Q 041517 239 GSALTKLCEWGVVGDLIEI-DA--GHDF-NSAWADINRAWRILRPGG 281 (327)
Q Consensus 239 gda~~~L~~l~~~fDLIfI-Da--~h~~-~~v~~dl~~~~~lL~pGG 281 (327)
+|..+ ++..+++||+|+. .. .|-. +.....++.+.++|+|||
T Consensus 56 ~D~~~-l~~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 56 ADARD-LPFSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SCTTC-HHHHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHhH-CcccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 88876 5666789999999 44 2311 335667899999999998
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-08 Score=101.08 Aligned_cols=136 Identities=15% Similarity=0.058 Sum_probs=92.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-Cccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI-DSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~-~~v~ 232 (327)
.++++||+||||.|..+..+++ .+...++++||+++++.+.++++... ..+...... .+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~----~~~v~~v~~VEid~~vi~~ar~~~~l--------------~~~~~~~~~dpr-- 355 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK----YPDVEQVTLVDLDPAMTELARTSPAL--------------RALNGGALDDPR-- 355 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh----CCCcCeEEEEECCHHHHHHHHhCCcc--------------hhhhccccCCCc--
Confidence 4689999999999999988886 24347999999999999998874211 111111111 23
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+++..+|+.+.+...+++||+|++|......+ ..+.++.+.++|+|||++++........ +..-..+.+.++
T Consensus 356 -v~vi~~Da~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~-~~~~~~i~~~l~ 433 (521)
T PRK03612 356 -VTVVNDDAFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA-PKAFWSIEATLE 433 (521)
T ss_pred -eEEEEChHHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc-hHHHHHHHHHHH
Confidence 88889999988776678999999997543321 1246789999999999999865432111 222233444445
Q ss_pred HcCCe
Q 041517 307 INGLK 311 (327)
Q Consensus 307 ~~gl~ 311 (327)
+.|+.
T Consensus 434 ~~gf~ 438 (521)
T PRK03612 434 AAGLA 438 (521)
T ss_pred HcCCE
Confidence 55553
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-08 Score=100.09 Aligned_cols=121 Identities=13% Similarity=0.080 Sum_probs=84.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+++..++...+..+|||+|||.|..|+.+++. ++ .++|+++|.++.+.+.+++ |+..
T Consensus 228 ~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~---~~-~~~v~a~D~~~~~l~~~~~-------------------n~~r 284 (426)
T TIGR00563 228 QWVATWLAPQNEETILDACAAPGGKTTHILEL---AP-QAQVVALDIHEHRLKRVYE-------------------NLKR 284 (426)
T ss_pred HHHHHHhCCCCCCeEEEeCCCccHHHHHHHHH---cC-CCeEEEEeCCHHHHHHHHH-------------------HHHH
Confidence 34444444445689999999999999999985 34 7899999999998887765 4444
Q ss_pred hccCCcccceEeeecchhhhhhh-cCCcEeEEEEcCCCCC-------Cc----------------HHHHHHHHHccCCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCE-WGVVGDLIEIDAGHDF-------NS----------------AWADINRAWRILRPG 280 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~-l~~~fDLIfIDa~h~~-------~~----------------v~~dl~~~~~lL~pG 280 (327)
.|... .+.+..+++...... ..++||.|++|+.-.. +. ...-|+.++++|+||
T Consensus 285 ~g~~~---~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 285 LGLTI---KAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred cCCCe---EEEEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44431 144455554332110 2467999999964221 11 135688999999999
Q ss_pred eEEEEEcCCCC
Q 041517 281 GVIFGHDYFTA 291 (327)
Q Consensus 281 GvIi~dD~~~~ 291 (327)
|.++...+-..
T Consensus 362 G~lvystcs~~ 372 (426)
T TIGR00563 362 GTLVYATCSVL 372 (426)
T ss_pred cEEEEEeCCCC
Confidence 99999988773
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-09 Score=84.07 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=56.6
Q ss_pred EEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeec
Q 041517 160 IEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSG 239 (327)
Q Consensus 160 LEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~g 239 (327)
||||||+|..+..+++. . +..+++++|+++.+.+.+++... ..+. .....+.+...
T Consensus 1 LdiGcG~G~~~~~l~~~---~-~~~~~~~~D~s~~~l~~a~~~~~-------------------~~~~-~~~~~~~~~~~ 56 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE---L-PDARYTGVDISPSMLERARERLA-------------------ELGN-DNFERLRFDVL 56 (99)
T ss_dssp -EESTTTS-TTTTHHHH---C--EEEEEEEESSSSTTSTTCCCHH-------------------HCT----EEEEE--SS
T ss_pred CEeCccChHHHHHHHHh---C-CCCEEEEEECCHHHHHHHHHHhh-------------------hcCC-cceeEEEeecC
Confidence 79999999999999985 2 68999999999999987766321 1010 00001333222
Q ss_pred chhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEE
Q 041517 240 SALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVI 283 (327)
Q Consensus 240 da~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvI 283 (327)
+..+. ...++||+|+.- .-|..+.....++.+.++|+|||+|
T Consensus 57 ~~~~~--~~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 57 DLFDY--DPPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---C--CC----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred Chhhc--ccccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 22211 112589999954 4444467778899999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=88.90 Aligned_cols=136 Identities=21% Similarity=0.210 Sum_probs=101.3
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
..+++|+-..+|..|+|+|+-.|.|+++.|..+...|...+|+++|++-.-.+.+-. .
T Consensus 59 ~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-------------------e--- 116 (237)
T COG3510 59 WNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-------------------E--- 116 (237)
T ss_pred HHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-------------------c---
Confidence 467788888899999999999999999999998888888999999997543221110 0
Q ss_pred hccCCcccceEeeecchhhh--------hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC----C
Q 041517 225 QNAIDSVLPVPFSSGSALTK--------LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA----A 292 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~--------L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~----~ 292 (327)
+..|.|..|++.+. ++....++ ||..|++|..+.+++.++.+.|+|.-|-++++-|.+-+ +
T Consensus 117 ------~p~i~f~egss~dpai~eqi~~~~~~y~kI-fvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~ 189 (237)
T COG3510 117 ------VPDILFIEGSSTDPAIAEQIRRLKNEYPKI-FVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGP 189 (237)
T ss_pred ------CCCeEEEeCCCCCHHHHHHHHHHhcCCCcE-EEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCc
Confidence 01155665554331 11112344 88899999999999999999999999999998887652 1
Q ss_pred Cc-----hhHHHHHHHHHHHcC
Q 041517 293 DN-----RGVRRAVNLFAKING 309 (327)
Q Consensus 293 ~~-----~GV~~Av~~f~~~~g 309 (327)
.. .|.++||.++.++.+
T Consensus 190 ~~p~~~g~gP~~AVe~ylr~~p 211 (237)
T COG3510 190 VLPWRFGGGPYEAVEAYLREFP 211 (237)
T ss_pred ccchhcCCChHHHHHHHHHhCC
Confidence 22 258999999988765
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=101.08 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=79.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.++.. . +.+++++|+++.+.+.|++. .. +...+ +
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~---~--~~~v~gvDiS~~~l~~A~~~-------------------~~--~~~~~---v 316 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAEN---F--DVHVVGIDLSVNMISFALER-------------------AI--GRKCS---V 316 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHh---c--CCEEEEEECCHHHHHHHHHH-------------------hh--cCCCc---e
Confidence 4679999999999999999874 2 67999999999988877652 11 12122 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
.+..++..+. +..+++||+|+.... +........++++.+.|+|||.+++.|+...
T Consensus 317 ~~~~~d~~~~-~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 317 EFEVADCTKK-TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EEEEcCcccC-CCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 7777776542 222468999998643 3234566889999999999999999988753
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.4e-08 Score=88.76 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=79.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .+...+++++|.++.+.+.+++... ..+.... +
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~---~~~~~~v~~~D~s~~~~~~a~~~~~-------------------~~~~~~~---~ 105 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKA---VGKTGEVVGLDFSEGMLAVGREKLR-------------------DLGLSGN---V 105 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHH---cCCCCeEEEEeCCHHHHHHHHHhhc-------------------ccccccC---e
Confidence 4579999999999999999985 3346899999999988887766321 1111112 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +...+.||+|++... |........++.+.+.|+|||++++-+...
T Consensus 106 ~~~~~d~~~~-~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 106 EFVQGDAEAL-PFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred EEEecccccC-CCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 6666666542 222468999998643 445566788999999999999998876543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.6e-08 Score=94.84 Aligned_cols=119 Identities=15% Similarity=0.029 Sum_probs=83.2
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||+|||+|..++.++.. .++.+++++|+++.+.+.|++ |+...+..++ |.+
T Consensus 135 ~~VLDlG~GsG~iai~la~~----~p~~~V~avDis~~al~~A~~-------------------n~~~~~l~~~---i~~ 188 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA----FPDAEVDAVDISPDALAVAEI-------------------NIERHGLEDR---VTL 188 (307)
T ss_pred CEEEEEechhhHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHhCCCCc---EEE
Confidence 78999999999999999984 347899999999999998877 4433344344 788
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCC-------------CCCc-------------HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGH-------------DFNS-------------AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h-------------~~~~-------------v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+|..+.++ +.+||+|+.+--. .+++ ...-++.+.++|+|||.+++. +..
T Consensus 189 ~~~D~~~~l~--~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E-~g~ 265 (307)
T PRK11805 189 IESDLFAALP--GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE-VGN 265 (307)
T ss_pred EECchhhhCC--CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE-ECc
Confidence 8888766543 3579999986210 0111 234578888999999999985 332
Q ss_pred CCCchhHHHHHHHHHHHcCC
Q 041517 291 AADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~~~gl 310 (327)
+ .. .+.+.+...++
T Consensus 266 ~-----~~-~~~~~~~~~~~ 279 (307)
T PRK11805 266 S-----RV-HLEEAYPDVPF 279 (307)
T ss_pred C-----HH-HHHHHHhhCCC
Confidence 1 12 35555555554
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-08 Score=90.05 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=77.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. .+..+++++|.++.+...+++.. . .+ +
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~-------------------~-----~~---~ 82 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKR----FPQAEFIALDISAGMLAQAKTKL-------------------S-----EN---V 82 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHh----CCCCcEEEEeChHHHHHHHHHhc-------------------C-----CC---C
Confidence 4679999999999999999884 45778999999988776554421 0 11 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +..+++||+|+...... .......++.+.+.|+|||++++.....
T Consensus 83 ~~~~~d~~~~-~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 83 QFICGDAEKL-PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred eEEecchhhC-CCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 5666665543 33357899999876432 2355678999999999999999987655
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=97.78 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=75.1
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.++|||||||+|+.++.|+.. + ...|++||+++.+...++. .++. .+...+
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~----g-~~~V~GiD~S~~~l~q~~a-----------------~~~~--~~~~~~-- 173 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGA----G-AKLVVGIDPSQLFLCQFEA-----------------VRKL--LGNDQR-- 173 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc----C-CCEEEEEcCCHHHHHHHHH-----------------HHHh--cCCCCC--
Confidence 345789999999999999999884 3 3469999998776542211 0011 111112
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+..++..+ ++. +..||+|+.-+ -|-.......++.+.+.|+|||.++++++.
T Consensus 174 -i~~~~~d~e~-lp~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~ 228 (322)
T PRK15068 174 -AHLLPLGIEQ-LPA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLV 228 (322)
T ss_pred -eEEEeCCHHH-CCC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEE
Confidence 7777776554 344 67899999743 332355678899999999999999988654
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.9e-08 Score=88.17 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=78.6
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++.......+..+|||||||+|..+..+++. +.+++++|.++++.+.+++. +...
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~-------------------~~~~ 93 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLH-------------------ALES 93 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHH-------------------HHHc
Confidence 3333333445679999999999999988873 46899999999887766542 2111
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+. .+.+..++..+.....++.||+|++.... ........++.+.+.|+|||++++.+..
T Consensus 94 ~~-----~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 94 GL-----KIDYRQTTAEELAAEHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CC-----ceEEEecCHHHhhhhcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 21 15566666555433345789999886432 1234456789999999999999987653
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.4e-08 Score=94.64 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=82.1
Q ss_pred HHHHHHhh---cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDK---VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~---~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
-+..+++. .+..+|||||||.|..++.+|+. . +.+|++++++++..+.+++ .+
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~---y--~v~V~GvTlS~~Q~~~~~~-------------------r~ 115 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE---Y--GVTVVGVTLSEEQLAYAEK-------------------RI 115 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHH---c--CCEEEEeeCCHHHHHHHHH-------------------HH
Confidence 34444443 34679999999999999999984 2 7999999999988877765 34
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC---CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD---FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...|+.++ |++...|= +...++||-|..=+..+ .+....+++.+.+.|+|||++++|++..
T Consensus 116 ~~~gl~~~---v~v~l~d~----rd~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~ 179 (283)
T COG2230 116 AARGLEDN---VEVRLQDY----RDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG 179 (283)
T ss_pred HHcCCCcc---cEEEeccc----cccccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence 45566544 55543332 33356799988543322 1224478999999999999999999986
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-08 Score=92.15 Aligned_cols=120 Identities=17% Similarity=0.128 Sum_probs=82.8
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||+|||+|..++.++.. .++.+++++|+++.+.+.+++ |+...+..++ +.+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~----~~~~~v~avDis~~al~~a~~-------------------n~~~~~~~~~---v~~ 169 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYE----FPNAEVIAVDISPDALAVAEE-------------------NAEKNQLEHR---VEF 169 (284)
T ss_pred CEEEEEeccHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEE
Confidence 68999999999999999985 346899999999999988876 4433344333 778
Q ss_pred eecchhhhhhhcCCcEeEEEEcCC-------------CCCC-------------cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAG-------------HDFN-------------SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~-------------h~~~-------------~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..++..+.++ +.+||+|+.+-- ..++ .....++.+.++|+|||++++.-..+
T Consensus 170 ~~~d~~~~~~--~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 170 IQSNLFEPLA--GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred EECchhccCc--CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 8887665432 237999997510 0111 13345778888999999998854443
Q ss_pred CCCchhHHHHHHHHHH-HcCC
Q 041517 291 AADNRGVRRAVNLFAK-INGL 310 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~-~~gl 310 (327)
-..++.++.. ..++
T Consensus 248 ------q~~~~~~~~~~~~~~ 262 (284)
T TIGR00536 248 ------QQKSLKELLRIKFTW 262 (284)
T ss_pred ------HHHHHHHHHHhcCCC
Confidence 2445666555 3443
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.8e-08 Score=83.56 Aligned_cols=130 Identities=16% Similarity=0.076 Sum_probs=83.4
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~ 229 (327)
.+...+.++|||+|||+|..+..+++. +.+++++|.++.+.+.+++. +...+..+
T Consensus 18 ~~~~~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~-------------------~~~~~~~~ 72 (188)
T PRK14968 18 NAVDKKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCN-------------------AKLNNIRN 72 (188)
T ss_pred hhhccCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHH-------------------HHHcCCCC
Confidence 333456789999999999999999873 68999999999988877653 22222221
Q ss_pred cccceEeeecchhhhhhhcCCcEeEEEEcCCCCC----------------------CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 230 SVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF----------------------NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 230 ~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~----------------------~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+ .+.+..++..+.+. ...||+|+.+..... ......++.+.++|+|||.+++--
T Consensus 73 ~--~~~~~~~d~~~~~~--~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 73 N--GVEVIRSDLFEPFR--GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred c--ceEEEecccccccc--ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 1 14555666555332 247999987643210 002345789999999999776643
Q ss_pred CCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 288 YFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 288 ~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
... .+ .+.+..++.+.|+++.
T Consensus 149 ~~~----~~-~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 149 SSL----TG-EDEVLEYLEKLGFEAE 169 (188)
T ss_pred ccc----CC-HHHHHHHHHHCCCeee
Confidence 222 12 2345566677787754
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.8e-08 Score=85.48 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=74.0
Q ss_pred HHHHHHHh-hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLID-KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~-~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..+.. ..+..+|||||||.|..+..|+.. +.+++++|+++.+.+. . +
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~--~-------------------~-- 61 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK--R-------------------N-- 61 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH--T-------------------T--
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh--h-------------------h--
Confidence 35555554 446789999999999999998763 4599999998876543 1 0
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.....+..+ ....++.||+|+.-.. +........++.+.++|+|||++++.+...
T Consensus 62 ----------~~~~~~~~~~-~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 62 ----------VVFDNFDAQD-PPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ----------SEEEEEECHT-HHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ----------hhhhhhhhhh-hhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 1111111111 1223579999996543 434567889999999999999999998874
|
... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.3e-08 Score=95.20 Aligned_cols=138 Identities=14% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
.++|||+|||+|..++.+++. .+..+|+++|.++.+.+.++++. ...+... ...++
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~----~P~~~V~~vD~S~~Av~~A~~N~-------------------~~n~~~~-~~~v~ 284 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSRLNV-------------------ETNMPEA-LDRCE 284 (378)
T ss_pred CCeEEEEeccccHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHH-------------------HHcCccc-CceEE
Confidence 469999999999999999984 56889999999999988887633 2212110 11267
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCC-CCC-----CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAG-HDF-----NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~-h~~-----~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
+..++..+.+. +.+||+|+.+-. |.. +..++-++.+.+.|+|||.+.+.- .. .-+....+++.+. +
T Consensus 285 ~~~~D~l~~~~--~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~-nr---~l~y~~~L~~~fg--~ 356 (378)
T PRK15001 285 FMINNALSGVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA-NR---HLDYFHKLKKIFG--N 356 (378)
T ss_pred EEEccccccCC--CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE-ec---CcCHHHHHHHHcC--C
Confidence 77776654332 358999999733 221 224566888999999999777653 22 1234444444332 3
Q ss_pred CeEEEccceEEEeccc
Q 041517 310 LKVQIDGQHWVIHSAV 325 (327)
Q Consensus 310 l~v~~~gq~w~i~~~~ 325 (327)
.++.-...+++|.+++
T Consensus 357 ~~~va~~~kf~vl~a~ 372 (378)
T PRK15001 357 CTTIATNNKFVVLKAV 372 (378)
T ss_pred ceEEccCCCEEEEEEE
Confidence 4444455566666554
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=96.39 Aligned_cols=109 Identities=15% Similarity=0.089 Sum_probs=82.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
.+|++||.||+|.|.++..+++ .++..+|++||+++...+.+++++... ..++ ..+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~----~~~~~~v~~VEiD~~vv~lar~~~~~~-----------------~~~~~dpr-- 158 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLR----HKTVEKVVMCDIDQEVVDFCRKHLTVN-----------------REAFCDKR-- 158 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHh----CCCCCeEEEEECCHHHHHHHHHhcccc-----------------cccccCCc--
Confidence 3689999999999999988876 344678999999999999998865310 0011 223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCC---Cc----HHHHHH-HHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NS----AWADIN-RAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~----v~~dl~-~~~~lL~pGGvIi~d 286 (327)
+++..+|+.+.|...+++||+|++|..... .+ ..+.++ .+.++|+|||++++.
T Consensus 159 -v~v~~~Da~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 159 -LELIINDARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred -eEEEEChhHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 889999999988776789999999964321 11 235676 789999999999875
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=87.20 Aligned_cols=135 Identities=21% Similarity=0.202 Sum_probs=89.1
Q ss_pred hHHHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 142 SYGAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 142 ~~g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.+..++..+.+.. .+.+|||+|||+|..++.++.. .++.+++++|.++.+.+.+++
T Consensus 72 ~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~----~~~~~v~~iD~~~~~~~~a~~------------------ 129 (251)
T TIGR03534 72 DTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKE----RPDARVTAVDISPEALAVARK------------------ 129 (251)
T ss_pred ChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH------------------
Confidence 3344555554443 3469999999999999999984 346799999999998887766
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC--------------CCc-------------HHHHHHH
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD--------------FNS-------------AWADINR 272 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--------------~~~-------------v~~dl~~ 272 (327)
|+...+.. + +.+..++..+.++ .++||+|+.+-... +++ ...-++.
T Consensus 130 -~~~~~~~~-~---~~~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~ 202 (251)
T TIGR03534 130 -NAARLGLD-N---VTFLQSDWFEPLP--GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQ 202 (251)
T ss_pred -HHHHcCCC-e---EEEEECchhccCc--CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHH
Confidence 33322331 2 7777887766432 47899999853210 000 1234678
Q ss_pred HHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 273 AWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 273 ~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.+.|+|||++++..-.. -.+.+.+++.+.|++
T Consensus 203 ~~~~L~~gG~~~~~~~~~------~~~~~~~~l~~~gf~ 235 (251)
T TIGR03534 203 APRLLKPGGWLLLEIGYD------QGEAVRALFEAAGFA 235 (251)
T ss_pred HHHhcccCCEEEEEECcc------HHHHHHHHHHhCCCC
Confidence 899999999998853221 134556666667764
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.8e-08 Score=95.61 Aligned_cols=142 Identities=18% Similarity=0.119 Sum_probs=100.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.-..+.+..+.++||.+=|+||.++++.|.+ +. ++++||.+....+.|++ |+..
T Consensus 208 ~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~-------------------N~~L 262 (393)
T COG1092 208 NRRALGELAAGKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARE-------------------NAEL 262 (393)
T ss_pred HHHHHhhhccCCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHH-------------------HHHh
Confidence 3344555566889999999999999999985 55 99999999999998887 5555
Q ss_pred hccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCC------CCCCcHH----HHHHHHHccCCCCeEEEEEcCCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAG------HDFNSAW----ADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~------h~~~~v~----~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
.|+... +++++.+|+.+.|... +.+||+|++|-- .....+. .-+..+.++|+|||++++-.+...
T Consensus 263 Ng~~~~--~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 263 NGLDGD--RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred cCCCcc--ceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 555322 2889999999988765 459999999932 1111122 235678999999999999888764
Q ss_pred CCchhHHHHHHHHHHHcCCeEEE
Q 041517 292 ADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 292 ~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
..-..-.+.+.+-+...+..++.
T Consensus 341 ~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 341 FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred cCHHHHHHHHHHHHHhcCCcEEE
Confidence 33333445555555555555443
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-08 Score=94.81 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 143 YGAVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 143 ~g~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
|...+..+++.+ +..+|||||||.|..++.+|+. . +.+|++|.+++...+.+++
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~---~--g~~v~gitlS~~Q~~~a~~------------------ 103 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAER---Y--GCHVTGITLSEEQAEYARE------------------ 103 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHH---H----EEEEEES-HHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHH---c--CcEEEEEECCHHHHHHHHH------------------
Confidence 334566666654 3578999999999999999994 2 6899999998877666654
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+...|+.++ +.+...|-.+ +..+||-|+.=+..+. ......++.+.++|+|||+++++.+..
T Consensus 104 -~~~~~gl~~~---v~v~~~D~~~----~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 104 -RIREAGLEDR---VEVRLQDYRD----LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp -HHHCSTSSST---EEEEES-GGG-------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred -HHHhcCCCCc---eEEEEeeccc----cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 4455566666 7777776544 3458999874322211 223478999999999999999998765
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-07 Score=85.34 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=77.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+|||.|..+..+++. .+...+++++|+++.+.+.+++. .. ...+ +
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~---~~~~~~~~~iD~~~~~~~~~~~~-------------------~~---~~~~---i 90 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKS---APDRGKVTGVDFSSEMLEVAKKK-------------------SE---LPLN---I 90 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHh---cCCCceEEEEECCHHHHHHHHHH-------------------hc---cCCC---c
Confidence 5789999999999999999985 34347999999998877655442 11 1112 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +...++||+|++.. .|........++.+.++|+|||.+++.++..
T Consensus 91 ~~~~~d~~~~-~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 91 EFIQADAEAL-PFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eEEecchhcC-CCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 6666766553 22246899998753 3445566788999999999999999877643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=86.14 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=83.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|..++.+++. + ..+++++|.++.+.+.+++ |+...+. .+.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~----~-~~~v~~vD~s~~~l~~a~~-------------------n~~~~~~-----~~~ 87 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA----G-AGSVTAVDISRRAVRSARL-------------------NALLAGV-----DVD 87 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc----C-CCeEEEEECCHHHHHHHHH-------------------HHHHhCC-----eeE
Confidence 469999999999999998873 2 3599999999998887765 3333232 156
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCC----------------------cHHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFN----------------------SAWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~----------------------~v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
+..++..+.++ +..||+|+.+...... .....++.+.++|+|||++++-.-..
T Consensus 88 ~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~--- 162 (223)
T PRK14967 88 VRRGDWARAVE--FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL--- 162 (223)
T ss_pred EEECchhhhcc--CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc---
Confidence 66777665432 4689999998421110 01234677889999999988732221
Q ss_pred chhHHHHHHHHHHHcCCeEEEccceEE
Q 041517 294 NRGVRRAVNLFAKINGLKVQIDGQHWV 320 (327)
Q Consensus 294 ~~GV~~Av~~f~~~~gl~v~~~gq~w~ 320 (327)
....++++.+ +..++.+.....+|+
T Consensus 163 -~~~~~~~~~l-~~~g~~~~~~~~~~~ 187 (223)
T PRK14967 163 -SGVERTLTRL-SEAGLDAEVVASQWI 187 (223)
T ss_pred -cCHHHHHHHH-HHCCCCeEEEEeecc
Confidence 1234444444 556776665544443
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.8e-08 Score=87.61 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=71.5
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++.+|||||||+|..+..+++. + ++.++++||+++.+.+.|++... +
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~---~-~~~~v~giDiS~~~l~~A~~~~~----------------~------------ 89 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRL---L-PFKHIYGVEINEYAVEKAKAYLP----------------N------------ 89 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHh---C-CCCeEEEEECCHHHHHHHHhhCC----------------C------------
Confidence 35678999999999999999874 2 47899999999999987765211 0
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ +..+++||+|+..+...+ ......++++.+.+ ++++++.++..
T Consensus 90 ~~~~~~d~~~--~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 90 INIIQGSLFD--PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred CcEEEeeccC--CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 3445555544 333578999998775322 22456677778876 56777777754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-08 Score=93.21 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=92.0
Q ss_pred CchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 140 WGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 140 w~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
++..+.+|..++.....++|||+|||+|..++.+|.- .. ..+|++||+.+.+.++|++
T Consensus 29 ~~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r---~~-~a~I~~VEiq~~~a~~A~~------------------ 86 (248)
T COG4123 29 YGTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQR---TE-KAKIVGVEIQEEAAEMAQR------------------ 86 (248)
T ss_pred cccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhcc---CC-CCcEEEEEeCHHHHHHHHH------------------
Confidence 3677889999988878999999999999999999972 33 5999999999999999877
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcC-CcEeEEEEcCC------------------CCCCc-HHHHHHHHHccCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWG-VVGDLIEIDAG------------------HDFNS-AWADINRAWRILRP 279 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~-~~fDLIfIDa~------------------h~~~~-v~~dl~~~~~lL~p 279 (327)
|+...++.++ |.+..+|..+..+... .+||+|+..-- |+-.. ..+-++.+..+|+|
T Consensus 87 -nv~ln~l~~r---i~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~ 162 (248)
T COG4123 87 -NVALNPLEER---IQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP 162 (248)
T ss_pred -HHHhCcchhc---eeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC
Confidence 5666666667 8898998877665544 45999986411 11111 12335677889999
Q ss_pred CeEEEE
Q 041517 280 GGVIFG 285 (327)
Q Consensus 280 GGvIi~ 285 (327)
||.+.+
T Consensus 163 ~G~l~~ 168 (248)
T COG4123 163 GGRLAF 168 (248)
T ss_pred CCEEEE
Confidence 998887
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.9e-08 Score=92.21 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=79.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..++.+++. .|+.+++++|. +++.+.+++ |+...++.++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~----~p~~~~~~~D~-~~~~~~a~~-------------------~~~~~gl~~r--- 200 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNE-------------------NAAEKGVADR--- 200 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH----CCCCEEEEEec-HHHHHHHHH-------------------HHHhCCccce---
Confidence 34689999999999999999985 45789999997 566666554 4555566566
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcC-CCCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDA-GHDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
|++..+|..+. .+ ..+|+|++-. .|.+.+ ....++.+.+.|+|||.+++.|+.+
T Consensus 201 v~~~~~d~~~~--~~-~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 201 MRGIAVDIYKE--SY-PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred EEEEecCccCC--CC-CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 88888886542 12 2369887653 454433 3467999999999999999999866
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.9e-08 Score=95.93 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=90.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++...+..+|||+|||+|..++.+++. . ++++|+++|.++.+.+.+++ |+...
T Consensus 235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~---~-~~~~v~a~D~s~~~l~~~~~-------------------n~~~~ 291 (427)
T PRK10901 235 LAATLLAPQNGERVLDACAAPGGKTAHILEL---A-PQAQVVALDIDAQRLERVRE-------------------NLQRL 291 (427)
T ss_pred HHHHHcCCCCCCEEEEeCCCCChHHHHHHHH---c-CCCEEEEEeCCHHHHHHHHH-------------------HHHHc
Confidence 3344444445679999999999999999985 2 34899999999998887765 44333
Q ss_pred ccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCC--------------c---------HHHHHHHHHccCCCCe
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFN--------------S---------AWADINRAWRILRPGG 281 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~--------------~---------v~~dl~~~~~lL~pGG 281 (327)
|.. +.+..+|+.+..... +.+||.|++|+.-... . ....++.+.++|+|||
T Consensus 292 g~~-----~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG 366 (427)
T PRK10901 292 GLK-----ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGG 366 (427)
T ss_pred CCC-----eEEEEcCcccchhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 431 556677765532211 4679999999742210 0 1246889999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
.++.-.+...+. .+. .-+..|.+.+ ++++.
T Consensus 367 ~lvystcs~~~~-Ene-~~v~~~l~~~~~~~~~ 397 (427)
T PRK10901 367 TLLYATCSILPE-ENE-QQIKAFLARHPDAELL 397 (427)
T ss_pred EEEEEeCCCChh-hCH-HHHHHHHHhCCCCEEe
Confidence 999888765321 112 3444555443 45543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.3e-09 Score=93.82 Aligned_cols=103 Identities=21% Similarity=0.099 Sum_probs=79.0
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+.+|+|+|||.|-||-.+++- -|+..|++||.++.|.+.|++.. .
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~R----wP~A~i~GiDsS~~Mla~Aa~rl----------------------------p 75 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARR----WPDAVITGIDSSPAMLAKAAQRL----------------------------P 75 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHh----CCCCeEeeccCCHHHHHHHHHhC----------------------------C
Confidence 446899999999999999999983 45999999999999998775421 1
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.++|..+|..+.-+ ..+.|+||..+...+ ++.-+-|..++..|.|||+|.+.=-.
T Consensus 76 ~~~f~~aDl~~w~p--~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 76 DATFEEADLRTWKP--EQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred CCceecccHhhcCC--CCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 15565666444212 368999999987655 44457789999999999999986433
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-08 Score=89.00 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=99.4
Q ss_pred HHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHH---HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCC
Q 041517 106 RQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGA---VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGL 182 (327)
Q Consensus 106 ~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~---lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~ 182 (327)
...++++.+...+||.-.. .|.++.+ +|...+..-+-++++|+||+.|..|..||..
T Consensus 5 ~~~~l~~~la~~DPW~~~~--------------~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r------ 64 (201)
T PF05401_consen 5 NYQLLNRELANDDPWGFET--------------SWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPR------ 64 (201)
T ss_dssp HHHHHHHHHTSSSGGGTTT---------------HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG------
T ss_pred HHHHHHHHhCCCCCCCCCC--------------CHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHh------
Confidence 4556777776666654332 3445433 3332122223478999999999999999985
Q ss_pred CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC
Q 041517 183 DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD 262 (327)
Q Consensus 183 ~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~ 262 (327)
-.+++++|+++...+.|++. +. +. . .|++...+-.+..+ .+.||||++-.-..
T Consensus 65 Cd~LlavDis~~Al~~Ar~R-------------------l~--~~-~---~V~~~~~dvp~~~P--~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 65 CDRLLAVDISPRALARARER-------------------LA--GL-P---HVEWIQADVPEFWP--EGRFDLIVLSEVLY 117 (201)
T ss_dssp EEEEEEEES-HHHHHHHHHH-------------------TT--T--S---SEEEEES-TTT-----SS-EEEEEEES-GG
T ss_pred hCceEEEeCCHHHHHHHHHh-------------------cC--CC-C---CeEEEECcCCCCCC--CCCeeEEEEehHhH
Confidence 46899999999888877652 11 11 1 17887777655433 48999999875443
Q ss_pred CC----cHHHHHHHHHccCCCCeEEEEEcCCCC-----CCchhHHHHHHHHHHHcCCeEE-------EccceEEEec
Q 041517 263 FN----SAWADINRAWRILRPGGVIFGHDYFTA-----ADNRGVRRAVNLFAKINGLKVQ-------IDGQHWVIHS 323 (327)
Q Consensus 263 ~~----~v~~dl~~~~~lL~pGGvIi~dD~~~~-----~~~~GV~~Av~~f~~~~gl~v~-------~~gq~w~i~~ 323 (327)
|- .....++.+...|+|||.+|+-.+... ...-|. +.+.+++++.=.+|. ..++.|+|-+
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga-~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGA-ETVLEMLQEHLTEVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--H-HHHHHHHHHHSEEEEEEEEE-SSTTSEEEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccch-HHHHHHHHHHhhheeEEEEcCCCCCCceEeee
Confidence 32 234467888999999999998777541 122244 445555555433333 2566676643
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-07 Score=85.99 Aligned_cols=116 Identities=16% Similarity=0.022 Sum_probs=78.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+.......+|||+|||+|..++.++.. + ..+|++||.++...+.+++ |+...
T Consensus 44 l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr----~-a~~V~~vE~~~~a~~~a~~-------------------Nl~~~ 99 (199)
T PRK10909 44 LFNWLAPVIVDARCLDCFAGSGALGLEALSR----Y-AAGATLLEMDRAVAQQLIK-------------------NLATL 99 (199)
T ss_pred HHHHHhhhcCCCEEEEcCCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHH-------------------HHHHh
Confidence 4555544345679999999999999864431 2 4699999999988877765 44443
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc--cCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWR--ILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~--lL~pGGvIi~dD~~ 289 (327)
+.. + +.+..+|..+.++....+||+||+|--....-....++.+.+ +|+|+++|++.-..
T Consensus 100 ~~~-~---v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 100 KAG-N---ARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred CCC-c---EEEEEchHHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 432 2 788889988766544567999999976322222233444433 47999999887444
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=92.04 Aligned_cols=102 Identities=16% Similarity=0.105 Sum_probs=75.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..++.+++. . ++.+++++|.++++.+.+++.. .. .. +
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~---~-~~~~VtgVD~S~~mL~~A~~k~-------------------~~----~~---i 162 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKH---V-DAKNVTILDQSPHQLAKAKQKE-------------------PL----KE---C 162 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHH---C-CCCEEEEEECCHHHHHHHHHhh-------------------hc----cC---C
Confidence 3569999999999999998874 3 3579999999999888776521 10 11 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
++..++..+ ++..++.||+|+.... |........++++.+.|+|||.+++-+
T Consensus 163 ~~i~gD~e~-lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 163 KIIEGDAED-LPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred eEEeccHHh-CCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 667777655 3433578999987543 334556678999999999999987643
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=90.07 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=69.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||++|+.+..+|.. +++.++||+||+++.+.+... ++... ... |.
T Consensus 133 G~~VLDLGaG~G~~t~~lAdi---VG~~G~VyAVD~s~r~~~dLl--------------------~~ak~--r~N---I~ 184 (293)
T PTZ00146 133 GSKVLYLGAASGTTVSHVSDL---VGPEGVVYAVEFSHRSGRDLT--------------------NMAKK--RPN---IV 184 (293)
T ss_pred CCEEEEeCCcCCHHHHHHHHH---hCCCCEEEEEECcHHHHHHHH--------------------HHhhh--cCC---CE
Confidence 458999999999999999995 677899999999865432111 11000 011 45
Q ss_pred eeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++.+|+... +....+.||+||+|.... +.....+.++.++|+|||.+++ .+.+
T Consensus 185 ~I~~Da~~p~~y~~~~~~vDvV~~Dva~p-dq~~il~~na~r~LKpGG~~vI-~ika 239 (293)
T PTZ00146 185 PIIEDARYPQKYRMLVPMVDVIFADVAQP-DQARIVALNAQYFLKNGGHFII-SIKA 239 (293)
T ss_pred EEECCccChhhhhcccCCCCEEEEeCCCc-chHHHHHHHHHHhccCCCEEEE-EEec
Confidence 555665431 222235799999998642 2333345678899999999888 4444
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=92.48 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..|. ....++|||+|||+|..++.+++. .+..+|+++|+++.+.+.+++ |+...
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~----~p~~~v~~vDis~~Al~~A~~-------------------nl~~n 243 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARH----SPKIRLTLSDVSAAALESSRA-------------------TLAAN 243 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHH-------------------HHHHc
Confidence 444443 233578999999999999999984 457799999999998887766 33322
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CC-----CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HD-----FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRR 299 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~-----~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~ 299 (327)
+.. .++..++..+ ...++||+|+.+-. |. +......++.+.++|+|||.+++---.. ..++ .
T Consensus 244 ~l~-----~~~~~~D~~~---~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~~-l~y~---~ 311 (342)
T PRK09489 244 GLE-----GEVFASNVFS---DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANAF-LPYP---D 311 (342)
T ss_pred CCC-----CEEEEccccc---ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeCC-CChH---H
Confidence 322 2333344333 23578999998742 22 2334567889999999999765432221 2233 4
Q ss_pred HHHHHHHHcCCeEEEccceEEEeccc
Q 041517 300 AVNLFAKINGLKVQIDGQHWVIHSAV 325 (327)
Q Consensus 300 Av~~f~~~~gl~v~~~gq~w~i~~~~ 325 (327)
.+++... ..++......|.|.++.
T Consensus 312 ~l~~~Fg--~~~~la~~~~f~v~~a~ 335 (342)
T PRK09489 312 LLDETFG--SHEVLAQTGRFKVYRAI 335 (342)
T ss_pred HHHHHcC--CeEEEEeCCCEEEEEEE
Confidence 4444433 35666677788877665
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-07 Score=90.41 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=92.3
Q ss_pred HHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
-|+.|-+.. ++++|||+|||+|-.++.++. +| -.+++++|+++...+.++++. ..
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~k----LG-A~~v~g~DiDp~AV~aa~eNa-------------------~~ 207 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAK----LG-AKKVVGVDIDPQAVEAARENA-------------------RL 207 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHH----cC-CceEEEecCCHHHHHHHHHHH-------------------HH
Confidence 334443332 578999999999999999888 44 567999999999888887743 33
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
.+.... +........+. +. +++||+|+-.-- -+....-...+.++|+|||++|+.-+..+ -.+.|.+.
T Consensus 208 N~v~~~---~~~~~~~~~~~-~~-~~~~DvIVANIL--A~vl~~La~~~~~~lkpgg~lIlSGIl~~-----q~~~V~~a 275 (300)
T COG2264 208 NGVELL---VQAKGFLLLEV-PE-NGPFDVIVANIL--AEVLVELAPDIKRLLKPGGRLILSGILED-----QAESVAEA 275 (300)
T ss_pred cCCchh---hhcccccchhh-cc-cCcccEEEehhh--HHHHHHHHHHHHHHcCCCceEEEEeehHh-----HHHHHHHH
Confidence 232110 11111222221 11 369999997642 23444567788999999999999988762 35667777
Q ss_pred HHHcCCeEEE--ccceEE
Q 041517 305 AKINGLKVQI--DGQHWV 320 (327)
Q Consensus 305 ~~~~gl~v~~--~gq~w~ 320 (327)
....|+.+.. ....|+
T Consensus 276 ~~~~gf~v~~~~~~~eW~ 293 (300)
T COG2264 276 YEQAGFEVVEVLEREEWV 293 (300)
T ss_pred HHhCCCeEeEEEecCCEE
Confidence 7777887654 345565
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.4e-08 Score=87.14 Aligned_cols=116 Identities=13% Similarity=0.073 Sum_probs=72.1
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
...++..+++++|++|||.|..++++|+. +-.|+++|.++...+..++.. ...++
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a-------------------~~~~l 77 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLA-------------------EEEGL 77 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHH-------------------HHTT-
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHH-------------------hhcCc
Confidence 33456778999999999999999999995 789999999987666443321 11122
Q ss_pred CCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC--Cc-HHHHHHHHHccCCCCeEEEEEcCCCCCCch
Q 041517 228 IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF--NS-AWADINRAWRILRPGGVIFGHDYFTAADNR 295 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~~-v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~ 295 (327)
+|+....|-.+ ..+++.||+|+...-..+ .+ ...-++.+...++|||+.++......+++|
T Consensus 78 -----~i~~~~~Dl~~--~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p 141 (192)
T PF03848_consen 78 -----DIRTRVADLND--FDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYP 141 (192)
T ss_dssp -----TEEEEE-BGCC--BS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS-
T ss_pred -----eeEEEEecchh--ccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCC
Confidence 25555555333 123568999986533222 22 234578888899999998875544433333
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-07 Score=87.24 Aligned_cols=134 Identities=20% Similarity=0.148 Sum_probs=85.6
Q ss_pred HHHHHHHHHh---hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 143 YGAVFGNLID---KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 143 ~g~lL~~L~~---~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
+..++..+.. ..++.+|||+|||+|..++.++.. .+..+++++|+++.+.+.++++
T Consensus 93 te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~----~~~~~v~~iDis~~~l~~a~~n----------------- 151 (275)
T PRK09328 93 TEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKE----RPDAEVTAVDISPEALAVARRN----------------- 151 (275)
T ss_pred cHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH-----------------
Confidence 3344444432 235679999999999999999985 3478999999999988877663
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC--------------CC-------------cHHHHHHH
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD--------------FN-------------SAWADINR 272 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--------------~~-------------~v~~dl~~ 272 (327)
+. .+...+ +.+..++..+.++ .++||+|+.+-..- ++ .....++.
T Consensus 152 --~~-~~~~~~---i~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~ 223 (275)
T PRK09328 152 --AK-HGLGAR---VEFLQGDWFEPLP--GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQ 223 (275)
T ss_pred --HH-hCCCCc---EEEEEccccCcCC--CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHH
Confidence 22 111122 7777776644332 36899998752100 00 12344667
Q ss_pred HHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 273 AWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 273 ~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.++|+|||++++. +.+ .-.+.+..++...|+.
T Consensus 224 ~~~~Lk~gG~l~~e-~g~-----~~~~~~~~~l~~~gf~ 256 (275)
T PRK09328 224 APRYLKPGGWLLLE-IGY-----DQGEAVRALLAAAGFA 256 (275)
T ss_pred HHHhcccCCEEEEE-ECc-----hHHHHHHHHHHhCCCc
Confidence 77999999999883 222 1224456666667754
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=99.16 Aligned_cols=114 Identities=20% Similarity=0.177 Sum_probs=81.2
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
..+....++.+|||||||+|..+..+++. .++.+++++|.++.|.+.+++. ....+
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~----~P~~kVtGIDIS~~MLe~Arar-------------------l~~~g- 466 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEE----TEDKRIYGIDISENVIDTLKKK-------------------KQNEG- 466 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH-------------------hhhcC-
Confidence 44455557899999999999999888874 3589999999999999877652 11111
Q ss_pred CCcccceEeeecchhhhhhh--cCCcEeEEEEcC-CCC-------------CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 228 IDSVLPVPFSSGSALTKLCE--WGVVGDLIEIDA-GHD-------------FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~--l~~~fDLIfIDa-~h~-------------~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+.+..+++.+ ++. .+++||+|+... -|. .......++.+.+.|+|||.+++.|...
T Consensus 467 ----~~ie~I~gDa~d-Lp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 467 ----RSWNVIKGDAIN-LSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred ----CCeEEEEcchHh-CccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 126667777665 332 247899998642 111 1234578899999999999999877643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-07 Score=95.24 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=83.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||+|||+|..++.++.. . ++.+++++|+++.+.+.|++ |+...++.++ +.
T Consensus 139 ~~~VLDlG~GsG~iai~la~~---~-p~~~v~avDis~~al~~A~~-------------------N~~~~~l~~~---v~ 192 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCE---L-PNANVIATDISLDAIEVAKS-------------------NAIKYEVTDR---IQ 192 (506)
T ss_pred CCEEEEccCchhHHHHHHHHH---C-CCCeEEEEECCHHHHHHHHH-------------------HHHHcCCccc---ee
Confidence 468999999999999999874 2 47899999999999988876 3333344444 77
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCC--------------CCCCc-------------HHHHHHHHHccCCCCeEEEEEcC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAG--------------HDFNS-------------AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~--------------h~~~~-------------v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+..++..+.++ +++||+|+.+-- ..+++ ...-++.+.++|+|||.+++. +
T Consensus 193 ~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-i 269 (506)
T PRK01544 193 IIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-I 269 (506)
T ss_pred eeecchhhhCc--CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-E
Confidence 77887665432 357999997521 00111 122356677899999999884 3
Q ss_pred CCCCCchhHHHHHHHHHHHcCCe
Q 041517 289 FTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 289 ~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
.. .-.+++..++...|+.
T Consensus 270 g~-----~q~~~v~~~~~~~g~~ 287 (506)
T PRK01544 270 GF-----KQEEAVTQIFLDHGYN 287 (506)
T ss_pred CC-----chHHHHHHHHHhcCCC
Confidence 32 2345666666666654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.7e-09 Score=96.00 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=76.0
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
++|||+|||+|..+..||+. +..|++||..+.+.+.|++...+++. ..+. ....+++
T Consensus 91 ~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~---------------~~~~--~~y~l~~ 147 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPV---------------LEGA--IAYRLEY 147 (282)
T ss_pred ceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCch---------------hccc--cceeeeh
Confidence 57999999999999999996 79999999999999999876433320 0010 0011444
Q ss_pred eecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 237 SSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...+..+ ..++||.|.. +.-+-.......++.+.++|+|||.+++.++++
T Consensus 148 ~~~~~E~----~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 148 EDTDVEG----LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred hhcchhh----cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 3333332 2356999875 333334445577899999999999999999987
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-07 Score=84.24 Aligned_cols=122 Identities=14% Similarity=0.005 Sum_probs=80.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||+|||+|..++.+++. .++.+++++|.++.+.+.+++ |+...+ ++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~----~~~~~v~~vDis~~al~~A~~-------------------N~~~~~-------~~ 136 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAA----LDGIELHAADIDPAAVRCARR-------------------NLADAG-------GT 136 (251)
T ss_pred CCEEEEecCchHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcC-------CE
Confidence 358999999999999999974 235799999999999988876 332222 24
Q ss_pred eeecchhhhhhh-cCCcEeEEEEcCCCC--------------CCc-------------HHHHHHHHHccCCCCeEEEEEc
Q 041517 236 FSSGSALTKLCE-WGVVGDLIEIDAGHD--------------FNS-------------AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 236 ~~~gda~~~L~~-l~~~fDLIfIDa~h~--------------~~~-------------v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+..+|..+.++. +.++||+|+.|---- +++ ...-++.+.++|+|||++++.-
T Consensus 137 ~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 137 VHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred EEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 556665554432 235799999884210 010 1234556679999999888752
Q ss_pred CCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 288 YFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 288 ~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
-.. . ...+..+++.+|+...
T Consensus 217 ~~~----~--~~~v~~~l~~~g~~~~ 236 (251)
T TIGR03704 217 SER----Q--APLAVEAFARAGLIAR 236 (251)
T ss_pred Ccc----h--HHHHHHHHHHCCCCce
Confidence 221 1 2356666677777644
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-07 Score=89.94 Aligned_cols=113 Identities=18% Similarity=0.096 Sum_probs=79.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..+- ......+||||||+|..++.+|+. .|+..++|||+.+.+.+.+.+ ++..
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~----~P~~~~iGIEI~~~~i~~a~~-------------------ka~~ 168 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKN----NPNKLFIGIEIHTPSIEQVLK-------------------QIEL 168 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHh----CCCCCEEEEECCHHHHHHHHH-------------------HHHH
Confidence 4444442 223468999999999999999984 468999999999988876654 2333
Q ss_pred hccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCc-------HHHHHHHHHccCCCCeEEEE
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNS-------AWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~-------v~~dl~~~~~lL~pGGvIi~ 285 (327)
.++. . |.+..+|+.+.+..+ ++.+|.|++--.-+++. ....++.+.++|+|||.+.+
T Consensus 169 ~gL~-N---V~~i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 169 LNLK-N---LLIINYDARLLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred cCCC-c---EEEEECCHHHhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 3332 2 788889987654333 47899999853211110 13578999999999997765
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=94.39 Aligned_cols=105 Identities=17% Similarity=0.151 Sum_probs=74.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||||+|..+..+++. ..+|++||.++.+.+.+++. .+.... +
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~------~~~v~giD~s~~~l~~a~~~----------------------~~~~~~---i 85 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK------AGQVIALDFIESVIKKNESI----------------------NGHYKN---V 85 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHH----------------------hccCCc---e
Confidence 4579999999999999999984 46899999999887654321 011112 6
Q ss_pred Eeeecchhh-hhhhcCCcEeEEEEcCCCCC-C--cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALT-KLCEWGVVGDLIEIDAGHDF-N--SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~-~L~~l~~~fDLIfIDa~h~~-~--~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ .++..+.+||+|++.....+ . .....++.+.+.|+|||+|++.|...
T Consensus 86 ~~~~~d~~~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 86 KFMCADVTSPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred EEEEecccccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 666666543 22323478999998764322 2 24567899999999999999987654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-07 Score=84.42 Aligned_cols=99 Identities=13% Similarity=0.187 Sum_probs=68.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.++|++||+++ +... . + +
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~---~~~~~~V~aVDi~~-~~~~----~-----------------~------------v 93 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQ---IGDKGRVIACDILP-MDPI----V-----------------G------------V 93 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHH---cCCCceEEEEeccc-ccCC----C-----------------C------------c
Confidence 3568999999999999999985 56678999999977 2110 0 1 3
Q ss_pred Eeeecchhhh--h----hhc-CCcEeEEEEcCCCCCCc------------HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTK--L----CEW-GVVGDLIEIDAGHDFNS------------AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~--L----~~l-~~~fDLIfIDa~h~~~~------------v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+|..+. + ..+ +.+||+|+.|....... ....++++.++|+|||.+++..+..
T Consensus 94 ~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 94 DFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred EEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 4444443331 1 112 46899999987432210 1346899999999999999977654
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.4e-07 Score=86.46 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=74.2
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
..++...++.+|||||||+|..+..|++.++..+++.+|+++|+++++.+.+++... ..+
T Consensus 53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~-------------------~~~- 112 (232)
T PRK06202 53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR-------------------RPG- 112 (232)
T ss_pred HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc-------------------cCC-
Confidence 333333457899999999999999998865445667799999999999988765321 001
Q ss_pred CCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 228 IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+++..+++.+ ++..+++||+|+.-.. |-.++ ....++++.+.++ |.+++.|...
T Consensus 113 ------~~~~~~~~~~-l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~ 169 (232)
T PRK06202 113 ------VTFRQAVSDE-LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR 169 (232)
T ss_pred ------CeEEEEeccc-ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence 2222222211 2223578999998643 32333 3457888888887 5666667654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-07 Score=89.98 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=72.0
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+.++|||||||+|+.++.++.. + ...|++||+++.|...++.. ++.. +...+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~----g-~~~v~GiDpS~~ml~q~~~~-----------------~~~~--~~~~~--- 172 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGH----G-AKSLVGIDPTVLFLCQFEAV-----------------RKLL--DNDKR--- 172 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHc----C-CCEEEEEcCCHHHHHHHHHH-----------------HHHh--ccCCC---
Confidence 45689999999999999888763 3 24799999999876543221 0110 11111
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+...+..+ ++. ...||+||.-+. +-.......++++.+.|+|||.+++.+..
T Consensus 173 v~~~~~~ie~-lp~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~ 227 (314)
T TIGR00452 173 AILEPLGIEQ-LHE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLV 227 (314)
T ss_pred eEEEECCHHH-CCC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEE
Confidence 4454454433 333 247999997653 22355678899999999999999987653
|
Known examples to date are restricted to the proteobacteria. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.5e-07 Score=90.39 Aligned_cols=135 Identities=19% Similarity=0.079 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 142 SYGAVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 142 ~~g~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
++..++..+.... +..+|||+|||+|..++.++.. .++.+++++|.++.+.+.++++
T Consensus 237 eTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~----~p~a~VtAVDiS~~ALe~AreN------------------ 294 (423)
T PRK14966 237 ETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALE----RPDAFVRASDISPPALETARKN------------------ 294 (423)
T ss_pred cHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH------------------
Confidence 4455666665444 3468999999999999999874 3478999999999999988773
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-------------CCc-------------HHHHHHHHH
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-------------FNS-------------AWADINRAW 274 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-------------~~~-------------v~~dl~~~~ 274 (327)
+...+. + +.+..+|..+.......+||+|+.+--.- +++ ...-++.+.
T Consensus 295 -a~~~g~--r---V~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 295 -AADLGA--R---VEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred -HHHcCC--c---EEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 332221 2 77788876542111135799999863210 000 123345666
Q ss_pred ccCCCCeEEEE-EcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 275 RILRPGGVIFG-HDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 275 ~lL~pGGvIi~-dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
++|+|||.+++ .++. -.+.+.+++...|+.
T Consensus 369 ~~LkpgG~lilEiG~~-------Q~e~V~~ll~~~Gf~ 399 (423)
T PRK14966 369 DRLAEGGFLLLEHGFD-------QGAAVRGVLAENGFS 399 (423)
T ss_pred HhcCCCcEEEEEECcc-------HHHHHHHHHHHCCCc
Confidence 79999998776 2222 245666677767754
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=84.17 Aligned_cols=100 Identities=10% Similarity=-0.017 Sum_probs=66.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. +.+++++|.++.+.+.+++.. ...+..++
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~-------------------~~~~~~~~--- 113 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERA-------------------PEAGLAGN--- 113 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHH-------------------HhcCCccC---
Confidence 35679999999999999999874 467999999999998887632 12222222
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.+..++. ....+.||+|+.-.. |.+ +.....++.+.+++++|+++.+
T Consensus 114 i~~~~~d~----~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 114 ITFEVGDL----ESLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred cEEEEcCc----hhccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 66766662 223578999987533 222 2334456667676655555544
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=83.76 Aligned_cols=106 Identities=15% Similarity=0.092 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+|||+|..+..+++. ..+++++|.++.+.+.+++. +...+.. .+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~-------------------~~~~~~~----~~ 95 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLH-------------------AKKDPLL----KI 95 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHH-------------------HHHcCCC----ce
Confidence 4789999999999999988873 45699999998887766542 2211110 26
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..++..+.......+||+|+.... +........++.+.+.|+|||++++.+..
T Consensus 96 ~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 96 EYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred EEEeCCHHHhhcCCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 67677766654333478999998642 22344567889999999999999887654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.1e-07 Score=85.67 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=107.3
Q ss_pred hhhhhhhhhccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhh-ccc
Q 041517 128 ISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKF-KEI 205 (327)
Q Consensus 128 v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~-~~~ 205 (327)
..++++.+....|..+..= -.+++-.+..+|||.++|.||+|+..++. +. .|++||.++...++|.-+ |+-
T Consensus 108 GIrMhrt~~tdP~~Dt~~K-v~~V~~~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr 180 (287)
T COG2521 108 GIRMHRTKGTDPLEDTLAK-VELVKVKRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSR 180 (287)
T ss_pred cEEEecccCcCcHHHHHhh-hheeccccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCc
Confidence 4445555555556332111 11222234689999999999999998774 56 999999999988877653 221
Q ss_pred CccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEc------CCCCCCcHHHHHHHHHccCC
Q 041517 206 PMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEID------AGHDFNSAWADINRAWRILR 278 (327)
Q Consensus 206 ~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfID------a~h~~~~v~~dl~~~~~lL~ 278 (327)
++.. . .|+++.||+.+..+.+ +.+||+|+-| +.+-|. .+.+++++++|+
T Consensus 181 ---------------~l~~-----~--~i~iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeLYs--eefY~El~RiLk 236 (287)
T COG2521 181 ---------------ELFE-----I--AIKIILGDAYEVVKDFDDESFDAIIHDPPRFSLAGELYS--EEFYRELYRILK 236 (287)
T ss_pred ---------------cccc-----c--ccEEecccHHHHHhcCCccccceEeeCCCccchhhhHhH--HHHHHHHHHHcC
Confidence 2111 1 2889999999998887 4789999988 333343 377899999999
Q ss_pred CCeEEEEEcCCCCCCchh--HHHHHHHHHHHcCCeEEEccc
Q 041517 279 PGGVIFGHDYFTAADNRG--VRRAVNLFAKINGLKVQIDGQ 317 (327)
Q Consensus 279 pGGvIi~dD~~~~~~~~G--V~~Av~~f~~~~gl~v~~~gq 317 (327)
|||.++==-......++| +.+.|.+-.+.-|+.+.-.-+
T Consensus 237 rgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~~ 277 (287)
T COG2521 237 RGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKVR 277 (287)
T ss_pred cCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeeeh
Confidence 999986422222224555 778888888888877543333
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.9e-07 Score=92.52 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=72.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.+++. . +.+|+++|+++++.+.+++. +. +. .+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~---~--g~~V~giDlS~~~l~~A~~~-------------------~~--~l-----~v 215 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEH---Y--GVSVVGVTISAEQQKLAQER-------------------CA--GL-----PV 215 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHHH-------------------hc--cC-----eE
Confidence 3569999999999999999874 2 57999999999988877652 21 11 15
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..++..+ ++++||.|+.-..... ......++.+.++|+|||+++++++..
T Consensus 216 ~~~~~D~~~----l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 216 EIRLQDYRD----LNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred EEEECchhh----cCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 555555433 2468999975432111 223467899999999999999987653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.9e-07 Score=79.79 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=65.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. ..+.++|+++|+++.+ .. . +
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~---~~~~~~v~~vDis~~~-----~~-~----------------~------------ 73 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQ---VGGKGRVIAVDLQPMK-----PI-E----------------N------------ 73 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHH---hCCCceEEEEeccccc-----cC-C----------------C------------
Confidence 35689999999999999998874 4457799999999854 10 0 1
Q ss_pred eEeeecchhh-----hhh-hc-CCcEeEEEEcCCCC------CCc------HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALT-----KLC-EW-GVVGDLIEIDAGHD------FNS------AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~-----~L~-~l-~~~fDLIfIDa~h~------~~~------v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+..++..+ .+. .. +..||+|++|+... .+. ....++.+.+.|+|||++++..+.
T Consensus 74 i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 74 VDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred ceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 2222222211 111 11 35799999986421 111 246788999999999999986433
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-07 Score=88.27 Aligned_cols=105 Identities=14% Similarity=-0.060 Sum_probs=70.1
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||+|||+|..+..+++.+ ..+.++++||++++|++.+++. +...... +.|.
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l---~~~~~~~~iDiS~~mL~~a~~~-------------------l~~~~p~---~~v~ 118 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDAL---RQPARYVPIDISADALKESAAA-------------------LAADYPQ---LEVH 118 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhh---ccCCeEEEEECCHHHHHHHHHH-------------------HHhhCCC---ceEE
Confidence 4799999999999999999863 3368899999999998877652 2111100 1256
Q ss_pred eeecchhhhhhhcC----CcEeEEEEcCCC---CCCcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEWG----VVGDLIEIDAGH---DFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l~----~~fDLIfIDa~h---~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
...+|..+.+.... ....+++.+... ..+.....|+.+.+.|+|||++++
T Consensus 119 ~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 119 GICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred EEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 66677654332211 134466666442 223355678999999999997764
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=88.60 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=68.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|+.+..+++.+... ....++++|+++.+.+.|++... + +
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~-~~~~v~giD~s~~~l~~A~~~~~----------------~------------~ 135 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEI-TTMQLFGLDISKVAIKYAAKRYP----------------Q------------V 135 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccc-cCCeEEEECCCHHHHHHHHHhCC----------------C------------C
Confidence 35789999999999999999853211 12489999999998877654210 1 4
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.+..+++.+ ++..+++||+|+.--.. ..++++.+.|+|||++++-..
T Consensus 136 ~~~~~d~~~-lp~~~~sfD~I~~~~~~------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 136 TFCVASSHR-LPFADQSLDAIIRIYAP------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred eEEEeeccc-CCCcCCceeEEEEecCC------CCHHHHHhhccCCCEEEEEeC
Confidence 555565544 34335789999853221 245789999999999987643
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-07 Score=84.38 Aligned_cols=117 Identities=7% Similarity=-0.175 Sum_probs=71.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..++||++|||.|..+++||+. +..|++||+++...+.+.+......... ... .+...+-..|
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~----------~~~-~~~~~~~~~v 96 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVT----------QQG-EFTRYRAGNI 96 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCccee----------ccc-cceeeecCce
Confidence 4579999999999999999984 7899999999988775422111000000 000 0000001127
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCc--HHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNS--AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~--v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
++..+|..+.-+...++||+|+--+. +..++ -..+++.+.++|+|||++++.-+
T Consensus 97 ~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 97 EIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred EEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 88888776532222357888864332 22222 23478999999999997655544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.5e-07 Score=87.27 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=73.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++.+|||+|||+|..++.+|+. +.+|+++|.++.+.+.+++ |+...+. ++
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~-------------------n~~~~~l-~~--- 222 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQ-------------------SAAELGL-TN--- 222 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHH-------------------HHHHcCC-Cc---
Confidence 35789999999999999999983 5799999999999988776 4433343 22
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+++..+|+.+.+......||+|++|-... .....+..++..++|+++|.+
T Consensus 223 v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~--G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 223 VQFQALDSTQFATAQGEVPDLVLVNPPRR--GIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred eEEEEcCHHHHHHhcCCCCeEEEECCCCC--CccHHHHHHHHHcCCCeEEEE
Confidence 88899998876544446799999995432 222445455555788775554
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=84.38 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=74.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
-..|||||||+|..--..-. .+..+|+++|+++.|.+++.+... +|. -..+.
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~-----~p~~svt~lDpn~~mee~~~ks~~---------------E~k--------~~~~~ 128 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPW-----KPINSVTCLDPNEKMEEIADKSAA---------------EKK--------PLQVE 128 (252)
T ss_pred ccceEEecccCCCCcccccC-----CCCceEEEeCCcHHHHHHHHHHHh---------------hcc--------CcceE
Confidence 45689999999988554332 368999999999999998865321 121 11133
Q ss_pred -eeecchhhhhhhc-CCcEeEEEEc---CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 -FSSGSALTKLCEW-GVVGDLIEID---AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 -~~~gda~~~L~~l-~~~fDLIfID---a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
|..+++.+ |+.+ ++++|.|+-- +.+ +.+.+.|+++.++|||||+|++-.-..
T Consensus 129 ~fvva~ge~-l~~l~d~s~DtVV~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 129 RFVVADGEN-LPQLADGSYDTVVCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEeechhc-CcccccCCeeeEEEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 66676655 4554 5899998743 444 556799999999999999999977665
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-07 Score=69.33 Aligned_cols=101 Identities=23% Similarity=0.160 Sum_probs=71.2
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|+|+|||.|..+..+++ ....+++++|.++...+.+++.. . .+.. ..+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~-------------------~-~~~~---~~~~~~ 52 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----GPGARVTGVDISPVALELARKAA-------------------A-ALLA---DNVEVL 52 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHHH-------------------h-cccc---cceEEE
Confidence 489999999999888876 23789999999887766554210 0 0111 126667
Q ss_pred ecchhhhhhhcCCcEeEEEEcCCCCC--CcHHHHHHHHHccCCCCeEEEEE
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAGHDF--NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~h~~--~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.++..+........+|+|+.+..... ......++.+.+.|+|||++++.
T Consensus 53 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 53 KGDAEELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EcChhhhccccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 77766643323468999999986543 33456788999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.58 E-value=9.5e-07 Score=79.23 Aligned_cols=117 Identities=15% Similarity=0.034 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..|.......+|||++||+|..++.++.. + ..+|++||.++...+.+++ |+...
T Consensus 40 ~f~~l~~~~~g~~vLDLfaGsG~lglea~sr----g-a~~v~~vE~~~~a~~~~~~-------------------N~~~~ 95 (189)
T TIGR00095 40 FFNILRPEIQGAHLLDVFAGSGLLGEEALSR----G-AKVAFLEEDDRKANQTLKE-------------------NLALL 95 (189)
T ss_pred HHHHHHHhcCCCEEEEecCCCcHHHHHHHhC----C-CCEEEEEeCCHHHHHHHHH-------------------HHHHh
Confidence 3343433446789999999999999998873 3 2489999999988877765 44444
Q ss_pred ccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHH--HccCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRA--WRILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~--~~lL~pGGvIi~dD~~ 289 (327)
+..++ +.+..+|+.+.+..+ ...||+||+|--.........++.+ ..+|++||+|++....
T Consensus 96 ~~~~~---~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 96 KSGEQ---AEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CCccc---EEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 44434 788889987766543 2358999999765443333344433 3479999999986443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.2e-07 Score=81.69 Aligned_cols=100 Identities=14% Similarity=0.066 Sum_probs=71.5
Q ss_pred HHHHHHHhh-cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLIDK-VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~~-~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..+... ..+.+|||||||+|..+..+++. . +++|+++|++++|.+.+++..
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~----~-~~~v~gvD~S~~Ml~~a~~~~-------------------- 94 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKV----F-KYYVVALDYAENMLKMNLVAD-------------------- 94 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHh----c-CCEEEEECCCHHHHHHHHhcc--------------------
Confidence 344554433 24689999999999999999884 2 579999999999998775410
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCe
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGG 281 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGG 281 (327)
.+..+++.+ ++..+++||+|++-.. |..++....++++.+.|+|+.
T Consensus 95 -----------~~~~~d~~~-lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 95 -----------DKVVGSFEA-LPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -----------ceEEechhh-CCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence 112344433 4544689999997643 434666789999999999954
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-07 Score=82.52 Aligned_cols=112 Identities=9% Similarity=0.051 Sum_probs=75.7
Q ss_pred HHHHHHHh-hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLID-KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~-~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..+.+ ..+..+|||||||+|..+..++.. +.+|+++|+++.+.+.+++. +.
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~-------------------~~ 98 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNR-------------------AQ 98 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHH-------------------HH
Confidence 34444432 345789999999999999999873 56999999999999887663 22
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEE-cCCCCCC--cHHHHHHHHHccCCCCeEEEEEcC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEI-DAGHDFN--SAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~--~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
..+..++ +.+..++..+. ..+||+|+. +.-+.++ .....+..+.+++++|+++.+...
T Consensus 99 ~~~~~~~---i~~~~~d~~~~----~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 99 GRDVAGN---VEFEVNDLLSL----CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred hcCCCCc---eEEEECChhhC----CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 1122122 77777775542 268999975 4433222 234567888888888888777543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-07 Score=88.44 Aligned_cols=107 Identities=13% Similarity=0.005 Sum_probs=75.2
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~ 229 (327)
++...+..+|||+|||+|..++.++.. +.+++++|+++.|...+++ |+...+..+
T Consensus 177 l~~~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~-------------------nl~~~g~~~ 231 (329)
T TIGR01177 177 LARVTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARI-------------------NLEHYGIED 231 (329)
T ss_pred HhCCCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHH-------------------HHHHhCCCC
Confidence 333334568999999999988776653 6899999999998877665 444445432
Q ss_pred cccceEeeecchhhhhhhcCCcEeEEEEcCC---------CCC-CcHHHHHHHHHccCCCCeEEEEE
Q 041517 230 SVLPVPFSSGSALTKLCEWGVVGDLIEIDAG---------HDF-NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 230 ~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~---------h~~-~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..+|+.+ ++..+..||+|+.|.. +.. .-....++.+.+.|+|||.+++-
T Consensus 232 ----i~~~~~D~~~-l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 232 ----FFVKRGDATK-LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred ----CeEEecchhc-CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 5666777665 3433578999999832 101 11346788999999999988764
|
This family is found exclusively in the Archaea. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=87.56 Aligned_cols=137 Identities=18% Similarity=0.179 Sum_probs=87.7
Q ss_pred HHHHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
...|+.|.+... .++|||||||+|-.++..++ +| -.+|+++|+++...+.+++ |+
T Consensus 149 ~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~k----lG-A~~v~a~DiDp~Av~~a~~-------------------N~ 204 (295)
T PF06325_consen 149 RLCLELLEKYVKPGKRVLDVGCGSGILAIAAAK----LG-AKKVVAIDIDPLAVEAARE-------------------NA 204 (295)
T ss_dssp HHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHH----TT-BSEEEEEESSCHHHHHHHH-------------------HH
T ss_pred HHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHH----cC-CCeEEEecCCHHHHHHHHH-------------------HH
Confidence 345555555544 57999999999999999887 45 4589999999998887776 55
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~ 302 (327)
...+..++ +... ...+. ..++||+|+..-. .+........+.++|+|||++|+.-+... ....|.+
T Consensus 205 ~~N~~~~~---~~v~--~~~~~---~~~~~dlvvANI~--~~vL~~l~~~~~~~l~~~G~lIlSGIl~~-~~~~v~~--- 270 (295)
T PF06325_consen 205 ELNGVEDR---IEVS--LSEDL---VEGKFDLVVANIL--ADVLLELAPDIASLLKPGGYLILSGILEE-QEDEVIE--- 270 (295)
T ss_dssp HHTT-TTC---EEES--CTSCT---CCS-EEEEEEES---HHHHHHHHHHCHHHEEEEEEEEEEEEEGG-GHHHHHH---
T ss_pred HHcCCCee---EEEE--Eeccc---ccccCCEEEECCC--HHHHHHHHHHHHHhhCCCCEEEEccccHH-HHHHHHH---
Confidence 55555554 3332 11111 1378999996543 24445566777889999999999888862 2233333
Q ss_pred HHHHHcCCeEE--EccceEE
Q 041517 303 LFAKINGLKVQ--IDGQHWV 320 (327)
Q Consensus 303 ~f~~~~gl~v~--~~gq~w~ 320 (327)
.+ +. |+++. .....|+
T Consensus 271 a~-~~-g~~~~~~~~~~~W~ 288 (295)
T PF06325_consen 271 AY-KQ-GFELVEEREEGEWV 288 (295)
T ss_dssp HH-HT-TEEEEEEEEETTEE
T ss_pred HH-HC-CCEEEEEEEECCEE
Confidence 33 33 77654 3445565
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.2e-07 Score=83.52 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=95.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccC--CCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQL--GLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l--~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
..++||+++|+|..|.-+.+.+... ..+++|+.+|++++|+.++++... ..++.++ -.
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~-------------------~~~l~~~-~~ 160 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK-------------------KRPLKAS-SR 160 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh-------------------hcCCCcC-Cc
Confidence 4689999999999999999975431 124899999999999998876321 0111111 01
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHH-HHHHHHHHHcCCe
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVR-RAVNLFAKINGLK 311 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~-~Av~~f~~~~gl~ 311 (327)
+....+||++ |+.-+..||..-|-.+.++ .+....+++++|.|||||++.+=+... |. +.+..|.+..-++
T Consensus 161 ~~w~~~dAE~-LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk------v~~~~l~~fy~~ysf~ 233 (296)
T KOG1540|consen 161 VEWVEGDAED-LPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK------VENEPLKWFYDQYSFD 233 (296)
T ss_pred eEEEeCCccc-CCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc------cccHHHHHHHHhhhhh
Confidence 7777888876 5766789999998877655 567789999999999999888654443 44 5666666655555
Q ss_pred EEE
Q 041517 312 VQI 314 (327)
Q Consensus 312 v~~ 314 (327)
|.+
T Consensus 234 Vlp 236 (296)
T KOG1540|consen 234 VLP 236 (296)
T ss_pred hhc
Confidence 544
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.2e-07 Score=84.17 Aligned_cols=109 Identities=12% Similarity=0.060 Sum_probs=87.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.|++||-||-|-|..+..+.+ ..+-.+++.||+++...+.++++.. +......+.| +
T Consensus 76 ~pk~VLiiGgGdG~tlRevlk----h~~ve~i~~VEID~~Vi~~ar~~l~----------------~~~~~~~dpR---v 132 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLK----HLPVERITMVEIDPAVIELARKYLP----------------EPSGGADDPR---V 132 (282)
T ss_pred CCCeEEEECCCccHHHHHHHh----cCCcceEEEEEcCHHHHHHHHHhcc----------------CcccccCCCc---e
Confidence 468999999999999999887 4568999999999999999988753 1111111345 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+|+.+.+.....+||+|++|..-..-+ ....++.+.+.|+++|+++..
T Consensus 133 ~i~i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 133 EIIIDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred EEEeccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 8889999999887767999999998654211 468899999999999999987
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.5e-06 Score=79.66 Aligned_cols=135 Identities=14% Similarity=0.017 Sum_probs=92.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+|++||-||-|.|..+..+.+ .++..+++.||+++...+.+++++. .....-.+.+ +
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~----~~~~~~i~~VEiD~~Vv~~a~~~f~----------------~~~~~~~d~r---~ 132 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLK----HPPVESITVVEIDPEVVELARKYFP----------------EFSEGLDDPR---V 132 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTT----STT-SEEEEEES-HHHHHHHHHHTH----------------HHHTTGGSTT---E
T ss_pred CcCceEEEcCCChhhhhhhhh----cCCcceEEEEecChHHHHHHHHhch----------------hhccccCCCc---e
Confidence 589999999999999888776 4556899999999999999888642 1111011233 8
Q ss_pred EeeecchhhhhhhcCC-cEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 235 PFSSGSALTKLCEWGV-VGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~-~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
++..+|+...+.+..+ +||+|++|...+..+ ..+.++.+.+.|+|||+++..-..... .+..-+.+...++..
T Consensus 133 ~i~~~Dg~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~-~~~~~~~i~~tl~~~ 211 (246)
T PF01564_consen 133 RIIIGDGRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFL-HPELFKSILKTLRSV 211 (246)
T ss_dssp EEEESTHHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTT-THHHHHHHHHHHHTT
T ss_pred EEEEhhhHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCccc-chHHHHHHHHHHHHh
Confidence 8899999999888766 999999998653211 257889999999999999987533211 233334444444544
Q ss_pred CCeEE
Q 041517 309 GLKVQ 313 (327)
Q Consensus 309 gl~v~ 313 (327)
.-.+.
T Consensus 212 F~~v~ 216 (246)
T PF01564_consen 212 FPQVK 216 (246)
T ss_dssp SSEEE
T ss_pred CCceE
Confidence 43443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=79.52 Aligned_cols=115 Identities=10% Similarity=-0.055 Sum_probs=71.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCc---cccchHHHHHHHHHHhhhccCCcc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM---VNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~---~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
+.++||++|||.|..+++||+. +.+|++||+++...+.+.+...+.. ..|+. +.. ...
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~--------~~~---~~~-- 97 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEF--------EHY---QAG-- 97 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHHHcCCCccccccccc--------ccc---ccC--
Confidence 3479999999999999999984 7899999999987765422110000 00000 000 011
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeE--EEEEcCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGV--IFGHDYF 289 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGv--Ii~dD~~ 289 (327)
.|.+..+|..+.-+.....||+|+--+. +.. +.-..+++.+.++|+|||+ ++...+.
T Consensus 98 -~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~ 159 (218)
T PRK13255 98 -EITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP 159 (218)
T ss_pred -ceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence 2777788776643333357999884332 212 2234678999999999975 3345443
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.8e-06 Score=83.46 Aligned_cols=127 Identities=14% Similarity=0.112 Sum_probs=88.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||++++.|.=|..||+. ++..+.|+++|+++.-....+ +|+...|..+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~---l~~~g~lvA~D~~~~R~~~L~-------------------~nl~r~G~~n---- 165 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAAL---MNNQGAIVANEYSASRVKVLH-------------------ANISRCGVSN---- 165 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH---cCCCCEEEEEeCCHHHHHHHH-------------------HHHHHcCCCe----
Confidence 35679999999999999999996 556789999999876554333 3666666532
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-------H----------------HHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-------A----------------WADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-------v----------------~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
|.....|+...-..+...||.|++|+--+... . .+-|+.++++|+|||+||...+-.
T Consensus 166 v~v~~~D~~~~~~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 166 VALTHFDGRVFGAALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred EEEEeCchhhhhhhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 56666666553233456899999997644221 1 345788899999999999999876
Q ss_pred CCCchhHHHHHHHHHHHc
Q 041517 291 AADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~~~ 308 (327)
++ ..=.+-|+.|.+++
T Consensus 246 ~~--eENE~vV~~~L~~~ 261 (470)
T PRK11933 246 NR--EENQAVCLWLKETY 261 (470)
T ss_pred CH--HHHHHHHHHHHHHC
Confidence 42 22334455555554
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.4e-07 Score=83.19 Aligned_cols=130 Identities=20% Similarity=0.075 Sum_probs=74.6
Q ss_pred CCCEEEEEcCcchHH----HHHHHHHhccC-CCCcEEEEEeCCCCChhhhhhhcccC--ccccchHHHHHHHHHHh----
Q 041517 155 RPRVIIEVGSFLGAS----ALHMANLTRQL-GLDSQILCIDDFRGWPGFRDKFKEIP--MVNGNVLLYFQFLQNVI---- 223 (327)
Q Consensus 155 ~p~~VLEIGt~~G~S----al~lA~a~r~l-~~~~~V~~ID~~~~~~~~A~~~~~~~--~~~g~~~~~~~Fl~nv~---- 223 (327)
++.+|+++|||+|.- |+.+++..... ..+.+|+++|+++.+.+.|++..... ...-......++.....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 356999999999975 44444432110 12579999999999999988742100 00000000111100000
Q ss_pred -hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 224 -YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 224 -~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.....++ |.|..++..+. +...++||+|+.-.. +-. +.....++.+.+.|+|||++++-..
T Consensus 179 v~~~ir~~---V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKER---VRFAKHNLLAE-SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCc---CEEeeccCCCC-CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0001112 77777776552 112478999998532 222 2334689999999999999998544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-06 Score=80.12 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=76.4
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI- 228 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~- 228 (327)
+.+..+.++||++=|++|.++++.+.. | -.+|++||.+....+.+++ |+...|+.
T Consensus 118 v~~~~~gkrvLnlFsYTGgfsv~Aa~g----G-A~~v~~VD~S~~al~~a~~-------------------N~~lNg~~~ 173 (286)
T PF10672_consen 118 VRKYAKGKRVLNLFSYTGGFSVAAAAG----G-AKEVVSVDSSKRALEWAKE-------------------NAALNGLDL 173 (286)
T ss_dssp HHHHCTTCEEEEET-TTTHHHHHHHHT----T-ESEEEEEES-HHHHHHHHH-------------------HHHHTT-CC
T ss_pred HHHHcCCCceEEecCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHH-------------------HHHHcCCCc
Confidence 344456889999999999999987763 1 3479999999998888877 44444443
Q ss_pred CcccceEeeecchhhhhhhc--CCcEeEEEEcCC---CCCCcHHH----HHHHHHccCCCCeEEEEEcCCC
Q 041517 229 DSVLPVPFSSGSALTKLCEW--GVVGDLIEIDAG---HDFNSAWA----DINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~---h~~~~v~~----dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++ +++..+|+.+.|..+ .++||+|++|-- +....+.. -+..+.++|+|||+|++.-+..
T Consensus 174 ~~---~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 174 DR---HRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp TC---EEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred cc---eEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 23 889999988877543 579999999933 11112223 3567889999999988776654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.7e-06 Score=79.09 Aligned_cols=130 Identities=15% Similarity=0.012 Sum_probs=78.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-Ccccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI-DSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~-~~v~~ 233 (327)
+..+|||||||+|..++.+++. +.+|+++|+++.|.+.+++... ..+.. .....
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~-------------------~~~~~~~~~~~ 198 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAK-------------------EALAALPPEVL 198 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHH-------------------hcccccccccc
Confidence 4679999999999999999983 5799999999999998876321 11000 00112
Q ss_pred eEeeecchhhhhhhcCCcEeEEEE-cCCCCCCc--HHHHHHHHHccCCCCeEEEEEcCCC---------CCCchh-----
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEI-DAGHDFNS--AWADINRAWRILRPGGVIFGHDYFT---------AADNRG----- 296 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~---------~~~~~G----- 296 (327)
+.+..++..+ +++.||+|+. |.-+.++. ....++.+. .+.+||+||...-.. ...++|
T Consensus 199 ~~f~~~Dl~~----l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~-~l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~ 273 (315)
T PLN02585 199 PKFEANDLES----LSGKYDTVTCLDVLIHYPQDKADGMIAHLA-SLAEKRLIISFAPKTLYYDILKRIGELFPGPSKAT 273 (315)
T ss_pred eEEEEcchhh----cCCCcCEEEEcCEEEecCHHHHHHHHHHHH-hhcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCc
Confidence 5666665432 3578999984 44332322 122344444 467788777542211 001111
Q ss_pred -----HHHHHHHHHHHcCCeEEE
Q 041517 297 -----VRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 297 -----V~~Av~~f~~~~gl~v~~ 314 (327)
-.+-+.++++..|+++..
T Consensus 274 r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 274 RAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred eeeeCCHHHHHHHHHHCCCEEEE
Confidence 145567777888888764
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.9e-06 Score=84.06 Aligned_cols=99 Identities=16% Similarity=0.189 Sum_probs=71.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|..++.+|+. ..+|+++|.++.+.+.+++ |+...+.. + +.
T Consensus 293 ~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~-------------------n~~~~~~~-n---v~ 343 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQ-------------------NAELNGIA-N---VE 343 (431)
T ss_pred CCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHH-------------------HHHHhCCC-c---eE
Confidence 478999999999999999984 4689999999999988876 33333321 2 88
Q ss_pred eeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+++.+.++.+ +..||+|++|.....- ....++.+. .++|++++.+
T Consensus 344 ~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 344 FLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-AAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred EEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-CHHHHHHHH-hcCCCEEEEE
Confidence 8999988766543 3579999999764321 123445444 4889987665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.4e-06 Score=78.83 Aligned_cols=132 Identities=20% Similarity=0.169 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 142 SYGAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 142 ~~g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
++..++..+.... .+.+|||||||+|..++.+|.. .+..+|+++|+++...+.|++
T Consensus 95 dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~----~~~~~V~a~Dis~~Al~~A~~------------------ 152 (280)
T COG2890 95 DTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKE----GPDAEVIAVDISPDALALARE------------------ 152 (280)
T ss_pred chHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhh----CcCCeEEEEECCHHHHHHHHH------------------
Confidence 4555665533111 1227999999999999999985 346899999999999999987
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEc-----CC--CC------CC-------------cHHHHHHHH
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID-----AG--HD------FN-------------SAWADINRA 273 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID-----a~--h~------~~-------------~v~~dl~~~ 273 (327)
|....++ .+ +.+..++ .+....++||+|+.. .. +. ++ -+..-++.+
T Consensus 153 -Na~~~~l-~~---~~~~~~d---lf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a 224 (280)
T COG2890 153 -NAERNGL-VR---VLVVQSD---LFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEA 224 (280)
T ss_pred -HHHHcCC-cc---EEEEeee---cccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhh
Confidence 4444444 22 3333333 233344589999743 22 00 11 134446778
Q ss_pred HccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 274 WRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 274 ~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
...|+|||++++---.. -.+.|.++....+
T Consensus 225 ~~~l~~~g~l~le~g~~------q~~~v~~~~~~~~ 254 (280)
T COG2890 225 PDILKPGGVLILEIGLT------QGEAVKALFEDTG 254 (280)
T ss_pred HHHcCCCcEEEEEECCC------cHHHHHHHHHhcC
Confidence 88999999887744332 2566777777777
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.2e-06 Score=79.90 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=91.0
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
||+.|-... .++|||+|||.|..++.+|+. .|..+++.+|.+.-..+.+++ |+...
T Consensus 150 Ll~~l~~~~-~~~vlDlGCG~Gvlg~~la~~----~p~~~vtmvDvn~~Av~~ar~-------------------Nl~~N 205 (300)
T COG2813 150 LLETLPPDL-GGKVLDLGCGYGVLGLVLAKK----SPQAKLTLVDVNARAVESARK-------------------NLAAN 205 (300)
T ss_pred HHHhCCccC-CCcEEEeCCCccHHHHHHHHh----CCCCeEEEEecCHHHHHHHHH-------------------hHHHc
Confidence 455554333 349999999999999999984 568999999999988888877 34333
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC-----CcHHHHHHHHHccCCCCeEE-EEEcCCCCCCchhHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF-----NSAWADINRAWRILRPGGVI-FGHDYFTAADNRGVR 298 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~-----~~v~~dl~~~~~lL~pGGvI-i~dD~~~~~~~~GV~ 298 (327)
+..+. .+...+..+ ...++||+|+..-- |.. .-.++-++.+.+.|++||-| |+-+ . .+...
T Consensus 206 ~~~~~----~v~~s~~~~---~v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan--~---~l~y~ 273 (300)
T COG2813 206 GVENT----EVWASNLYE---PVEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN--R---HLPYE 273 (300)
T ss_pred CCCcc----EEEEecccc---cccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc--C---CCChH
Confidence 33221 122222222 22348999997632 221 22346789999999999933 3434 2 23455
Q ss_pred HHHHHHHHHcCCeEEEccceEEEecccC
Q 041517 299 RAVNLFAKINGLKVQIDGQHWVIHSAVN 326 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~~~gq~w~i~~~~~ 326 (327)
...++.+. ..++...+..+.|.+++.
T Consensus 274 ~~L~~~Fg--~v~~la~~~gf~Vl~a~k 299 (300)
T COG2813 274 KKLKELFG--NVEVLAKNGGFKVLRAKK 299 (300)
T ss_pred HHHHHhcC--CEEEEEeCCCEEEEEEec
Confidence 55555554 456666667777766653
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.9e-06 Score=82.86 Aligned_cols=101 Identities=10% Similarity=0.055 Sum_probs=71.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||+|||+|..++.+|.. ..+|++||.++.+.+.+++ |+...+.. + +
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~-------------------N~~~~~~~-~---~ 283 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQ-------------------SAQMLGLD-N---L 283 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHH-------------------HHHHcCCC-c---E
Confidence 4679999999999999999862 5789999999999887776 44333432 2 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+++.+.+.....+||+|++|--- ......+-..+..++|+++|.+.
T Consensus 284 ~~~~~d~~~~~~~~~~~~D~vi~DPPr--~G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 284 SFAALDSAKFATAQMSAPELVLVNPPR--RGIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred EEEECCHHHHHHhcCCCCCEEEECCCC--CCCcHHHHHHHHhcCCCeEEEEE
Confidence 889999887665444569999999543 22223332333458998877663
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.2e-06 Score=78.08 Aligned_cols=147 Identities=15% Similarity=0.176 Sum_probs=92.8
Q ss_pred hhhhccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccch
Q 041517 133 RRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212 (327)
Q Consensus 133 ~~~~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~ 212 (327)
..++...| .=..+...+ .-++.++||||||+.||-+.-|+.. + ...|++||++.-..-..
T Consensus 95 DtEWrSd~-KW~rl~p~l-~~L~gk~VLDIGC~nGY~~frM~~~----G-A~~ViGiDP~~lf~~QF------------- 154 (315)
T PF08003_consen 95 DTEWRSDW-KWDRLLPHL-PDLKGKRVLDIGCNNGYYSFRMLGR----G-AKSVIGIDPSPLFYLQF------------- 154 (315)
T ss_pred cccccccc-hHHHHHhhh-CCcCCCEEEEecCCCcHHHHHHhhc----C-CCEEEEECCChHHHHHH-------------
Confidence 44555555 222344444 3467899999999999999999984 2 45799999976543211
Q ss_pred HHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC--CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 213 LLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG--HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 213 ~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~--h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.|++++. |.... +. ....+.+.|+. .+.||+||.=|- |. ..+...|..+...|+|||.+|++...-
T Consensus 155 ----~~i~~~l--g~~~~---~~-~lplgvE~Lp~-~~~FDtVF~MGVLYHr-r~Pl~~L~~Lk~~L~~gGeLvLETlvi 222 (315)
T PF08003_consen 155 ----EAIKHFL--GQDPP---VF-ELPLGVEDLPN-LGAFDTVFSMGVLYHR-RSPLDHLKQLKDSLRPGGELVLETLVI 222 (315)
T ss_pred ----HHHHHHh--CCCcc---EE-EcCcchhhccc-cCCcCEEEEeeehhcc-CCHHHHHHHHHHhhCCCCEEEEEEeee
Confidence 1233332 11111 22 22234455666 578999998765 43 345788999999999999999877654
Q ss_pred CC-------------Cchh-----HHHHHHHHHHHcCCe
Q 041517 291 AA-------------DNRG-----VRRAVNLFAKINGLK 311 (327)
Q Consensus 291 ~~-------------~~~G-----V~~Av~~f~~~~gl~ 311 (327)
+. ..++ -..++..++++-|++
T Consensus 223 ~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 223 DGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFK 261 (315)
T ss_pred cCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCc
Confidence 11 1111 346777778777764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=79.40 Aligned_cols=126 Identities=17% Similarity=0.073 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhh------cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHH
Q 041517 142 SYGAVFGNLIDK------VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLY 215 (327)
Q Consensus 142 ~~g~lL~~L~~~------~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~ 215 (327)
++..++...++. .++..++|+|||+|..++.|+.. ++ .+++++||.++....+|.+
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~---L~-~~~v~AiD~S~~Ai~La~e-------------- 190 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHG---LP-QCTVTAIDVSKAAIKLAKE-------------- 190 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhc---CC-CceEEEEeccHHHHHHHHH--------------
Confidence 555555554443 34668999999999999999984 66 8999999999988887766
Q ss_pred HHHHHHHhhhccCCcccceEe-eecchhhhhhhcCCcEeEEEE--------------------------cCCCCC-CcHH
Q 041517 216 FQFLQNVIYQNAIDSVLPVPF-SSGSALTKLCEWGVVGDLIEI--------------------------DAGHDF-NSAW 267 (327)
Q Consensus 216 ~~Fl~nv~~~g~~~~v~~V~~-~~gda~~~L~~l~~~fDLIfI--------------------------Da~h~~-~~v~ 267 (327)
|+...++.+++..+.+ ..++..+..+.+.+++|++.. ||..+. ....
T Consensus 191 -----N~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~ 265 (328)
T KOG2904|consen 191 -----NAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLV 265 (328)
T ss_pred -----HHHHHhhcCceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHH
Confidence 4545555555332322 244444433444567777753 333222 2244
Q ss_pred HHHHHHHccCCCCeEEEEEcCCC
Q 041517 268 ADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 268 ~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.++..+-++|+|||.+.+.-...
T Consensus 266 ~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 266 HYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred HHHHhhHhhcccCCeEEEEeccc
Confidence 56778889999999999876643
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.8e-06 Score=72.79 Aligned_cols=100 Identities=11% Similarity=-0.011 Sum_probs=70.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++. ..+++++|.++.+.+.+++. +.. .++ +
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~-------------------~~~---~~~---v 61 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREK-------------------FAA---ADN---L 61 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHH-------------------hcc---CCC---E
Confidence 4568999999999999999883 57999999999888776652 211 112 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHcc--CCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRI--LRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~l--L~pGGvIi~dD~ 288 (327)
++..+|+.+... .+..||.|+.+- +|+.....+..++.. +.++|++++..-
T Consensus 62 ~ii~~D~~~~~~-~~~~~d~vi~n~--Py~~~~~~i~~~l~~~~~~~~~~l~~q~e 114 (169)
T smart00650 62 TVIHGDALKFDL-PKLQPYKVVGNL--PYNISTPILFKLLEEPPAFRDAVLMVQKE 114 (169)
T ss_pred EEEECchhcCCc-cccCCCEEEECC--CcccHHHHHHHHHhcCCCcceEEEEEEHH
Confidence 788888776421 124689998764 344444666666653 447888887654
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=75.26 Aligned_cols=124 Identities=13% Similarity=0.135 Sum_probs=84.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+||++|||.|....-|++- +-.++++++|-+++..++|+... +..+..+. |+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~e----gf~~~L~GvDYs~~AV~LA~niA-------------------e~~~~~n~---I~ 121 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKE----GFQSKLTGVDYSEKAVELAQNIA-------------------ERDGFSNE---IR 121 (227)
T ss_pred ccceeeccCCchHHHHHHHHh----cCCCCccccccCHHHHHHHHHHH-------------------HhcCCCcc---ee
Confidence 459999999999999988884 44677999999999988875422 12344444 77
Q ss_pred eeecchhhhhhhcCCcEeEEE----Ec-----CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 236 FSSGSALTKLCEWGVVGDLIE----ID-----AGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIf----ID-----a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
|.+.|..+. .....+||+|. .| ++........|+....++|+|||+.++..++|. ..+.+++|..
T Consensus 122 f~q~DI~~~-~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T-----~dELv~~f~~ 195 (227)
T KOG1271|consen 122 FQQLDITDP-DFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT-----KDELVEEFEN 195 (227)
T ss_pred EEEeeccCC-cccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc-----HHHHHHHHhc
Confidence 776664442 12235677776 23 233222234688999999999999999999993 3466666654
Q ss_pred HcCCeE
Q 041517 307 INGLKV 312 (327)
Q Consensus 307 ~~gl~v 312 (327)
.++.+
T Consensus 196 -~~f~~ 200 (227)
T KOG1271|consen 196 -FNFEY 200 (227)
T ss_pred -CCeEE
Confidence 33443
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.4e-06 Score=83.51 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=74.9
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
++..+++.+ +..+|||+|||+|..++.+|+. ..+|+++|.++.+.+.|++ |+
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~-------------------n~ 339 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARE-------------------NA 339 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHH-------------------HH
Confidence 444444433 3479999999999999999984 4789999999999988876 33
Q ss_pred hhhccCCcccceEeeecchhhhhhh---cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCE---WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
...+.. + +.+..+|+.+.+.. .+.+||+|++|-.-. .....++.+ ..++|++++.+
T Consensus 340 ~~~~~~-~---v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~--g~~~~~~~l-~~~~~~~ivyv 398 (443)
T PRK13168 340 RRNGLD-N---VTFYHANLEEDFTDQPWALGGFDKVLLDPPRA--GAAEVMQAL-AKLGPKRIVYV 398 (443)
T ss_pred HHcCCC-c---eEEEEeChHHhhhhhhhhcCCCCEEEECcCCc--ChHHHHHHH-HhcCCCeEEEE
Confidence 333331 2 78888988775533 136799999986532 233455444 44788887665
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.9e-06 Score=91.40 Aligned_cols=141 Identities=14% Similarity=0.084 Sum_probs=87.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccC-cc-ccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIP-MV-NGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~-~~-~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+.+|||+|||+|..++.++.. .+..+|+++|+++.+.+.|+++.... .. .|... + .....+..++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~----~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~-~-----~~~~~~l~~r--- 185 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEK----WLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV-Y-----DGEGKTLLDR--- 185 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc-c-----cccccccccc---
Confidence 468999999999999999984 34679999999999999998854310 00 00000 0 0000011223
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEc------CC----------CC----------CCc-------------HHHHHHHHH
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEID------AG----------HD----------FNS-------------AWADINRAW 274 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfID------a~----------h~----------~~~-------------v~~dl~~~~ 274 (327)
|.+..+|..+.+...+.+||+|+.. ++ |+ +.. ....++++.
T Consensus 186 V~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~ 265 (1082)
T PLN02672 186 VEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGI 265 (1082)
T ss_pred EEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHH
Confidence 8888888777554333479999842 11 10 000 134466778
Q ss_pred ccCCCCeEEEEEcCCCCCCchhHHHHHH-HHHHHcCCeEEEc
Q 041517 275 RILRPGGVIFGHDYFTAADNRGVRRAVN-LFAKINGLKVQID 315 (327)
Q Consensus 275 ~lL~pGGvIi~dD~~~~~~~~GV~~Av~-~f~~~~gl~v~~~ 315 (327)
++|+|||++++-=. . +-.++|. +++...|++....
T Consensus 266 ~~L~pgG~l~lEiG-~-----~q~~~v~~~l~~~~gf~~~~~ 301 (1082)
T PLN02672 266 SVIKPMGIMIFNMG-G-----RPGQAVCERLFERRGFRITKL 301 (1082)
T ss_pred HhccCCCEEEEEEC-c-----cHHHHHHHHHHHHCCCCeeEE
Confidence 89999998887333 2 2356777 5777788776543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.3e-06 Score=74.82 Aligned_cols=101 Identities=20% Similarity=0.176 Sum_probs=69.8
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
.+||||||.|.+.+.+|.. .|+..+++||+.......+.+ .+...++. + +.+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~----~Pd~n~iGiE~~~~~v~~a~~-------------------~~~~~~l~-N---v~~~ 72 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKR----NPDINFIGIEIRKKRVAKALR-------------------KAEKRGLK-N---VRFL 72 (195)
T ss_dssp EEEEET-TTSHHHHHHHHH----STTSEEEEEES-HHHHHHHHH-------------------HHHHHTTS-S---EEEE
T ss_pred eEEEecCCCCHHHHHHHHH----CCCCCEEEEecchHHHHHHHH-------------------HHHhhccc-c---eEEE
Confidence 8999999999999999984 569999999998765544322 22223332 2 8888
Q ss_pred ecchhhhhhhc--CCcEeEEEEcCCCCCCc---------HHHHHHHHHccCCCCeEEEE
Q 041517 238 SGSALTKLCEW--GVVGDLIEIDAGHDFNS---------AWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 238 ~gda~~~L~~l--~~~fDLIfIDa~h~~~~---------v~~dl~~~~~lL~pGGvIi~ 285 (327)
.+++...|..+ ++++|-|+|--.-+++. ....++.+.+.|+|||.|.+
T Consensus 73 ~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 73 RGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred EccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 99988877654 47999999853211111 23568899999999997765
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=74.44 Aligned_cols=103 Identities=20% Similarity=0.101 Sum_probs=75.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
...+||||||.|.+.+.||.. .|+..++|||+.......+-+ .+...++. .++
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~----nP~~nfiGiEi~~~~v~~~l~-------------------k~~~~~l~----Nlr 101 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK----NPEKNFLGIEIRVPGVAKALK-------------------KIKELGLK----NLR 101 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH----CCCCCEEEEEEehHHHHHHHH-------------------HHHHcCCC----cEE
Confidence 358999999999999999984 668999999998765443322 33333432 389
Q ss_pred eeecchhhhhhhcC--CcEeEEEEc---CC----CCC--CcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEWG--VVGDLIEID---AG----HDF--NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l~--~~fDLIfID---a~----h~~--~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+|+.+.|..+. ++.|-|+|- -. |.. --.-.-++.+.+.|+|||+|-+
T Consensus 102 i~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~ 162 (227)
T COG0220 102 LLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF 162 (227)
T ss_pred EEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence 99999999887763 488888884 22 211 0012568999999999998887
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-06 Score=80.95 Aligned_cols=112 Identities=17% Similarity=0.125 Sum_probs=71.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||||||.|-+...+.+. .-.++-+|+++|.++...++.++....+. .....|..++
T Consensus 72 ~~~ilEvGCGvGNtvfPll~~--~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-----~~~~afv~Dl------------- 131 (264)
T KOG2361|consen 72 AETILEVGCGVGNTVFPLLKT--SPNNRLKVYACDFSPRAIELVKKSSGYDE-----SRVEAFVWDL------------- 131 (264)
T ss_pred hhhheeeccCCCcccchhhhc--CCCCCeEEEEcCCChHHHHHHHhccccch-----hhhcccceec-------------
Confidence 458999999999999999985 12234899999999998887766432110 1011111111
Q ss_pred eeecchhhhhhhcCCcEe---EEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGD---LIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fD---LIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
. ++.... +--.+.+| +||+=....-+.....++.+.++|+|||.|++-||..
T Consensus 132 -t-~~~~~~-~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 132 -T-SPSLKE-PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred -c-chhccC-CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 1 111110 00123444 5565444334556789999999999999999999987
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=72.36 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=78.9
Q ss_pred HHHHHHHHhh-cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLIDK-VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~~-~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
..++..|-.. ....++||+-+|+|..++-.+.- | -.+|+.||.+.......++ |+
T Consensus 30 ealFniL~~~~~~g~~vLDLFaGSGalGlEALSR----G-A~~v~fVE~~~~a~~~i~~-------------------N~ 85 (183)
T PF03602_consen 30 EALFNILQPRNLEGARVLDLFAGSGALGLEALSR----G-AKSVVFVEKNRKAIKIIKK-------------------NL 85 (183)
T ss_dssp HHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT----T--SEEEEEES-HHHHHHHHH-------------------HH
T ss_pred HHHHHHhcccccCCCeEEEcCCccCccHHHHHhc----C-CCeEEEEECCHHHHHHHHH-------------------HH
Confidence 3466666555 78899999999999999975541 2 4689999998776655444 55
Q ss_pred hhhccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCCCc-HHHHHHHHH--ccCCCCeEEEEEcCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFNS-AWADINRAW--RILRPGGVIFGHDYF 289 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~-v~~dl~~~~--~lL~pGGvIi~dD~~ 289 (327)
...+..++ +....+|+...+..+ +.+||+||+|--..... ....++.+. .+|+++|+|++---.
T Consensus 86 ~~l~~~~~---~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183)
T PF03602_consen 86 EKLGLEDK---IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSK 155 (183)
T ss_dssp HHHT-GGG---EEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEET
T ss_pred HHhCCCcc---eeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecC
Confidence 55554444 777788887777554 68999999996554443 245566665 799999998885543
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.6e-05 Score=73.91 Aligned_cols=128 Identities=16% Similarity=0.227 Sum_probs=82.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
....+|||+|||+|..++.+++.+.. .+..+|++||+++.+.+.|+++ +..
T Consensus 48 ~~~grVLDlG~GSG~Lalala~~~~~-~~~~~V~aVEID~~Al~~Ar~n-------------------~~~--------- 98 (241)
T PHA03412 48 CTSGSVVDLCAGIGGLSFAMVHMMMY-AKPREIVCVELNHTYYKLGKRI-------------------VPE--------- 98 (241)
T ss_pred cCCCEEEEccChHHHHHHHHHHhccc-CCCcEEEEEECCHHHHHHHHhh-------------------ccC---------
Confidence 35789999999999999999985321 2357999999999988887652 211
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcC------------CCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh----
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDA------------GHDF-NSAWADINRAWRILRPGGVIFGHDYFTAADNRG---- 296 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa------------~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G---- 296 (327)
+.+..+|.... .++.+||+|+.+- .|+. .....-++.+.+++++|+.|+=..... -+|.|
T Consensus 99 ~~~~~~D~~~~--~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~-~~y~~~~~~ 175 (241)
T PHA03412 99 ATWINADALTT--EFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSAN-FRYSGTHYF 175 (241)
T ss_pred CEEEEcchhcc--cccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccccc-CcccCccce
Confidence 44555555432 1246899998641 1211 112345778888888888866544433 22222
Q ss_pred ------HHHHHHHHHHHcCCeEE
Q 041517 297 ------VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 ------V~~Av~~f~~~~gl~v~ 313 (327)
--+.++.|.++.|+.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~ 198 (241)
T PHA03412 176 RQDESTTSSKCKKFLDETGLEMN 198 (241)
T ss_pred eeccCcccHHHHHHHHhcCeeec
Confidence 23567788888887654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=69.63 Aligned_cols=110 Identities=19% Similarity=0.131 Sum_probs=59.1
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc--cCCc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN--AIDS 230 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g--~~~~ 230 (327)
..++++|||+|||+|..++.+|.. ....+|+.-|..+ ..+..+. |+...+ ...+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~----~~~~~Vv~TD~~~-~l~~l~~-------------------Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKL----FGAARVVLTDYNE-VLELLRR-------------------NIELNGSLLDGR 98 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-----T-SEEEEEE-S--HHHHHHH-------------------HHHTT-------
T ss_pred hcCCceEEEECCccchhHHHHHhc----cCCceEEEeccch-hhHHHHH-------------------HHHhcccccccc
Confidence 345789999999999999999984 3478999999987 5554444 333322 1222
Q ss_pred ccceEeeecchh-hhhhhcCCcEeEEE-EcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 231 VLPVPFSSGSAL-TKLCEWGVVGDLIE-IDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 231 v~~V~~~~gda~-~~L~~l~~~fDLIf-IDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+....+.-++.. .... -..+||+|+ -|.-........-++.+..+|+++|.+++-.
T Consensus 99 v~v~~L~Wg~~~~~~~~-~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 99 VSVRPLDWGDELDSDLL-EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp -EEEE--TTS-HHHHHH-S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred ccCcEEEecCccccccc-ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 111222223322 1111 135899988 4655544444556778888999987644433
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.9e-06 Score=74.99 Aligned_cols=131 Identities=20% Similarity=0.188 Sum_probs=86.2
Q ss_pred HHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.+..+..... .+.++|+|||+|..++.+|+. -.+|+++|+++.|++++++...+ ..
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~------~k~VIatD~s~~mL~~a~k~~~~-----------------~y 79 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEH------YKEVIATDVSEAMLKVAKKHPPV-----------------TY 79 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHh------hhhheeecCCHHHHHHhhcCCCc-----------------cc
Confidence 5566665554 348999999999888888885 57899999999999988764321 11
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCe-EEEEEcCC-CCCCchhHHHHH
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGG-VIFGHDYF-TAADNRGVRRAV 301 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGG-vIi~dD~~-~~~~~~GV~~Av 301 (327)
+-.|..+.+.+..+. -.-++++|||..- |-| +-+-.+.+..+.+.||+.| +|++=.|. .-..+|.+-.-.
T Consensus 80 -----~~t~~~ms~~~~v~L-~g~e~SVDlI~~Aqa~H-WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~ 152 (261)
T KOG3010|consen 80 -----CHTPSTMSSDEMVDL-LGGEESVDLITAAQAVH-WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVM 152 (261)
T ss_pred -----ccCCccccccccccc-cCCCcceeeehhhhhHH-hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHH
Confidence 111233333332222 2225799999865 445 4444567889999999855 99988887 334566655555
Q ss_pred HHHHH
Q 041517 302 NLFAK 306 (327)
Q Consensus 302 ~~f~~ 306 (327)
.++..
T Consensus 153 ~r~~~ 157 (261)
T KOG3010|consen 153 LRLYD 157 (261)
T ss_pred HHHhh
Confidence 55544
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.9e-05 Score=72.78 Aligned_cols=124 Identities=10% Similarity=0.065 Sum_probs=80.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..++|||+|||+|..++.++.. ....+|+++|+++.+.+.+++. .. + +
T Consensus 64 ~~grVLDLGcGsGilsl~la~r----~~~~~V~gVDisp~al~~Ar~n-------------------~~------~---v 111 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHR----CKPEKIVCVELNPEFARIGKRL-------------------LP------E---A 111 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHh-------------------Cc------C---C
Confidence 3579999999999998888773 2257999999999888776552 11 1 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC--C----c---------------HHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF--N----S---------------AWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~----~---------------v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
.+..+|..+.. .+..||+|+.+-..-. . . ...-+...-.+|+|+|.+.+. |.-.+-
T Consensus 112 ~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~-yss~~~ 188 (279)
T PHA03411 112 EWITSDVFEFE--SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA-YSGRPY 188 (279)
T ss_pred EEEECchhhhc--ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE-Eecccc
Confidence 56677766643 2467999998643211 0 0 123345556788999966554 443333
Q ss_pred chh--HHHHHHHHHHHcCCeEE
Q 041517 294 NRG--VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 294 ~~G--V~~Av~~f~~~~gl~v~ 313 (327)
|.+ -....+.+.+.+|+.+.
T Consensus 189 y~~sl~~~~y~~~l~~~g~~~~ 210 (279)
T PHA03411 189 YDGTMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred ccccCCHHHHHHHHHhcCcEec
Confidence 333 34666777788887654
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.4e-05 Score=75.90 Aligned_cols=87 Identities=14% Similarity=-0.015 Sum_probs=63.7
Q ss_pred HHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 145 AVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 145 ~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
.++..+.+... ..+|||++||+|..++.+++. ..+|++||.++.+.+.+++ |+
T Consensus 194 ~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~------~~~v~~vE~~~~ai~~a~~-------------------N~ 248 (362)
T PRK05031 194 KMLEWALDATKGSKGDLLELYCGNGNFTLALARN------FRRVLATEISKPSVAAAQY-------------------NI 248 (362)
T ss_pred HHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh------CCEEEEEECCHHHHHHHHH-------------------HH
Confidence 45555554443 358999999999999999984 3589999999999988776 44
Q ss_pred hhhccCCcccceEeeecchhhhhhhc---------------CCcEeEEEEcCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEW---------------GVVGDLIEIDAG 260 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l---------------~~~fDLIfIDa~ 260 (327)
...+.. + +.+..+|+.+.++.+ +.+||+|++|--
T Consensus 249 ~~~~~~-~---v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 249 AANGID-N---VQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred HHhCCC-c---EEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCC
Confidence 433432 2 888889988876543 125899999965
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.1e-05 Score=77.96 Aligned_cols=99 Identities=18% Similarity=0.108 Sum_probs=75.7
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||++||+|..++.+|.. .+ ..+|+++|.++...+.+++ |+...+..+ +.+
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~---~~-~~~V~a~Din~~Av~~a~~-------------------N~~~N~~~~----~~v 111 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALE---TG-VEKVTLNDINPDAVELIKK-------------------NLELNGLEN----EKV 111 (382)
T ss_pred CEEEECCCcccHHHHHHHHH---CC-CCEEEEEeCCHHHHHHHHH-------------------HHHHhCCCc----eEE
Confidence 58999999999999999874 22 3589999999998887776 444434321 567
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+|+.+.+.. ...||+|++|-- -.....++.++..+++||+|.+.
T Consensus 112 ~~~Da~~~l~~-~~~fD~V~lDP~---Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 112 FNKDANALLHE-ERKFDVVDIDPF---GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EhhhHHHHHhh-cCCCCEEEECCC---CCcHHHHHHHHHHhcCCCEEEEE
Confidence 78888776653 467999999963 22346778888999999999986
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.3e-05 Score=71.97 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
....++-..++.....+|+|-|||+|..+..++++ ++|.|+++++|..+.-.+.|.+ .
T Consensus 92 ~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiara---V~ptGhl~tfefH~~Ra~ka~e-------------------e 149 (314)
T KOG2915|consen 92 PDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARA---VAPTGHLYTFEFHETRAEKALE-------------------E 149 (314)
T ss_pred ccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHh---hCcCcceEEEEecHHHHHHHHH-------------------H
Confidence 33445555556666789999999999999999996 7889999999996554444433 2
Q ss_pred HhhhccCCcccceEeeecchhh-hhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCCCchhHHH
Q 041517 222 VIYQNAIDSVLPVPFSSGSALT-KLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGG-VIFGHDYFTAADNRGVRR 299 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~-~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGG-vIi~dD~~~~~~~~GV~~ 299 (327)
...-+..++ +.+..-|... .+..-...+|.||+|-- .+|..+-.++++|+-+| ++|. .+|=...|.+
T Consensus 150 Fr~hgi~~~---vt~~hrDVc~~GF~~ks~~aDaVFLDlP----aPw~AiPha~~~lk~~g~r~cs----FSPCIEQvqr 218 (314)
T KOG2915|consen 150 FREHGIGDN---VTVTHRDVCGSGFLIKSLKADAVFLDLP----APWEAIPHAAKILKDEGGRLCS----FSPCIEQVQR 218 (314)
T ss_pred HHHhCCCcc---eEEEEeecccCCccccccccceEEEcCC----ChhhhhhhhHHHhhhcCceEEe----ccHHHHHHHH
Confidence 222234444 3333322111 11111367999999964 46688888999999877 4432 1233456777
Q ss_pred HHHHHHHH
Q 041517 300 AVNLFAKI 307 (327)
Q Consensus 300 Av~~f~~~ 307 (327)
.++.+..-
T Consensus 219 tce~l~~~ 226 (314)
T KOG2915|consen 219 TCEALRSL 226 (314)
T ss_pred HHHHHHhC
Confidence 77777553
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=74.18 Aligned_cols=125 Identities=18% Similarity=0.127 Sum_probs=79.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCc------c----ccch-----------
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM------V----NGNV----------- 212 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~------~----~g~~----------- 212 (327)
..+..+|||||-.|..|+.||.-+ + ...|+|+|+++-....|++..+... . +++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F---~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDF---G-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhh---c-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 468999999999999999999963 3 6679999999999888877542111 1 0000
Q ss_pred ---HHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEE-------cCCCCCCcHHHHHHHHHccCCCCeE
Q 041517 213 ---LLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEI-------DAGHDFNSAWADINRAWRILRPGGV 282 (327)
Q Consensus 213 ---~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI-------Da~h~~~~v~~dl~~~~~lL~pGGv 282 (327)
...-+|..|+.... .+ ..+... +.|......||.|+. =-+|..+..+..+..++++|.|||+
T Consensus 133 a~~a~t~~~p~n~~f~~--~n---~vle~~---dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGi 204 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQK--EN---YVLESD---DFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGI 204 (288)
T ss_pred ccccccccCCcchhccc--cc---EEEecc---hhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcE
Confidence 00001222222110 00 222222 233223478999873 2334446788899999999999999
Q ss_pred EEEEcCCC
Q 041517 283 IFGHDYFT 290 (327)
Q Consensus 283 Ii~dD~~~ 290 (327)
+|+--=.|
T Consensus 205 LvvEPQpW 212 (288)
T KOG2899|consen 205 LVVEPQPW 212 (288)
T ss_pred EEEcCCch
Confidence 99976665
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.8e-05 Score=74.61 Aligned_cols=108 Identities=11% Similarity=-0.069 Sum_probs=71.5
Q ss_pred HHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 145 AVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 145 ~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
.++..+.+..+ +.+|||+|||+|..++.+++. ..+|++||.++.+.+.+++ |+
T Consensus 185 ~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~------~~~v~~vE~~~~av~~a~~-------------------n~ 239 (353)
T TIGR02143 185 KMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN------FRRVLATEIAKPSVNAAQY-------------------NI 239 (353)
T ss_pred HHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh------CCEEEEEECCHHHHHHHHH-------------------HH
Confidence 45555555443 457999999999999999985 3589999999999988876 44
Q ss_pred hhhccCCcccceEeeecchhhhhhhc---------C------CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEW---------G------VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l---------~------~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
...+.. + +++..+++.+.++.. . ..||+||+|---.. -....++.+.+ |+++|.+
T Consensus 240 ~~~~~~-~---v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G-~~~~~l~~l~~---~~~ivYv 309 (353)
T TIGR02143 240 AANNID-N---VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAG-LDPDTCKLVQA---YERILYI 309 (353)
T ss_pred HHcCCC-c---EEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCC-CcHHHHHHHHc---CCcEEEE
Confidence 333332 2 788888888766531 1 23899999965211 11233344433 6665555
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.8e-05 Score=79.96 Aligned_cols=109 Identities=18% Similarity=0.176 Sum_probs=73.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
...|++||||+|-.....+++.+..+...+|++||-++......++ .+...+..++ |.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~-------------------~v~~n~w~~~---V~ 244 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQK-------------------RVNANGWGDK---VT 244 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHH-------------------HHHHTTTTTT---EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHH-------------------HHHhcCCCCe---EE
Confidence 4689999999999988888775445556899999998754432221 1233455556 89
Q ss_pred eeecchhhhhhhcCCcEeEEEEc---CCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEID---AGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfID---a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+++++..+. .+++++|+|+.. .--.++-.-+.|....+.|+|||++|=.-+
T Consensus 245 vi~~d~r~v--~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~ 298 (448)
T PF05185_consen 245 VIHGDMREV--ELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSY 298 (448)
T ss_dssp EEES-TTTS--CHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEE
T ss_pred EEeCcccCC--CCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcch
Confidence 999998774 345799999965 222334455788999999999999984433
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=70.09 Aligned_cols=90 Identities=10% Similarity=-0.096 Sum_probs=59.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..+..+++. ....+++||+++.+.+.+++. + +
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~i~~a~~~-----------------------~-------~ 57 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-----KQVRGYGIEIDQDGVLACVAR-----------------------G-------V 57 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-----cCCcEEEEeCCHHHHHHHHHc-----------------------C-------C
Confidence 3569999999999999888763 145789999988776544320 1 3
Q ss_pred Eeeecchhhhhh-hcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCC
Q 041517 235 PFSSGSALTKLC-EWGVVGDLIEIDAG-HDFNSAWADINRAWRILRP 279 (327)
Q Consensus 235 ~~~~gda~~~L~-~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~p 279 (327)
++..++..+.++ ..+++||+|+.-.. |........++++.+.+++
T Consensus 58 ~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 58 NVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred eEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 444555544332 22468999998643 3234556677887776654
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=97.96 E-value=8.9e-05 Score=67.68 Aligned_cols=121 Identities=18% Similarity=0.142 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCcchH--HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 143 YGAVFGNLIDKVRPRVIIEVGSFLGA--SALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 143 ~g~lL~~L~~~~~p~~VLEIGt~~G~--Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
..+|+..|+.-..++.|+|+.+..|. +|+.||.+.+ ..+|+++||-+.++.....++
T Consensus 29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr--~TgGR~vCIvp~~~~~~~~~~------------------- 87 (218)
T PF07279_consen 29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR--QTGGRHVCIVPDEQSLSEYKK------------------- 87 (218)
T ss_pred HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH--hcCCeEEEEcCChhhHHHHHH-------------------
Confidence 45799999988889999999887653 5788887754 568999999998765432222
Q ss_pred HHhhhccCCcccceEeeecchh-hhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 221 NVIYQNAIDSVLPVPFSSGSAL-TKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~-~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+...+..+. ++|..|++. +.++.+ ..+||++||+...... ...|+ +.++-+.|.|++..|.+.
T Consensus 88 ~l~~~~~~~~---vEfvvg~~~e~~~~~~-~~iDF~vVDc~~~d~~-~~vl~-~~~~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 88 ALGEAGLSDV---VEFVVGEAPEEVMPGL-KGIDFVVVDCKREDFA-ARVLR-AAKLSPRGAVVVCYNAFS 152 (218)
T ss_pred HHhhcccccc---ceEEecCCHHHHHhhc-cCCCEEEEeCCchhHH-HHHHH-HhccCCCceEEEEecccc
Confidence 2223344444 788888854 566666 4699999999863211 12333 344445678899988876
|
The function of this family is unknown. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00013 Score=65.45 Aligned_cols=118 Identities=17% Similarity=0.131 Sum_probs=82.6
Q ss_pred HHHHHHHHh-hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLID-KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~-~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
..++..|.. .....++||+=+|+|..++-.+.- + -.+++.||.+.......++ |+
T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR----G-A~~~~~vE~~~~a~~~l~~-------------------N~ 86 (187)
T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSR----G-AARVVFVEKDRKAVKILKE-------------------NL 86 (187)
T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhC----C-CceEEEEecCHHHHHHHHH-------------------HH
Confidence 346666665 378899999999999999886651 2 5689999998766554444 66
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCc--EeEEEEcCCCCCCcH--HHHHHH--HHccCCCCeEEEEEcC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVV--GDLIEIDAGHDFNSA--WADINR--AWRILRPGGVIFGHDY 288 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~--fDLIfIDa~h~~~~v--~~dl~~--~~~lL~pGGvIi~dD~ 288 (327)
...++... +.+...++...|+..+.. ||+||+|--....-. ...+.. -..+|+|||+|++.--
T Consensus 87 ~~l~~~~~---~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 87 KALGLEGE---ARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhCCccc---eEEEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 65555445 777888888877777655 999999965432222 222333 2367999999998544
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.2e-05 Score=74.48 Aligned_cols=101 Identities=16% Similarity=0.047 Sum_probs=78.3
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
-+|||..||+|.-++.++.- .+.-.+|+++|.++...+..++ |+...+.. .+.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e---~~ga~~Vv~nD~n~~Av~~i~~-------------------N~~~N~~~----~~~v 99 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHE---IEGVREVFANDINPKAVESIKN-------------------NVEYNSVE----NIEV 99 (374)
T ss_pred CEEEECCCchhHHHHHHHhh---CCCCCEEEEEeCCHHHHHHHHH-------------------HHHHhCCC----cEEE
Confidence 48999999999999999873 2223689999999988876665 44433332 2678
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+|+...+.....+||+|++|-- ......++.+.+.+++||+|.+.
T Consensus 100 ~~~Da~~~l~~~~~~fDvIdlDPf---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 100 PNEDAANVLRYRNRKFHVIDIDPF---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EchhHHHHHHHhCCCCCEEEeCCC---CCcHHHHHHHHHhcccCCEEEEE
Confidence 888988887765678999999973 23347899999999999999887
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.91 E-value=8.6e-05 Score=67.48 Aligned_cols=146 Identities=18% Similarity=0.152 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcC-CC-EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 144 GAVFGNLIDKVR-PR-VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 144 g~lL~~L~~~~~-p~-~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+++.|.+.++ .+ +|||||||+|.-+.++|+. ++ .-+-..-|.++....--+. .
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~---lP-~l~WqPSD~~~~~~~sI~a-------------------~ 68 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQA---LP-HLTWQPSDPDDNLRPSIRA-------------------W 68 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHH---CC-CCEEcCCCCChHHHhhHHH-------------------H
Confidence 445666655554 34 4999999999999999996 33 5666666776654211111 1
Q ss_pred HhhhccCCcccceEeeecchhhhhh----hcCCcEeEEEE-cCCC--CCCcHHHHHHHHHccCCCCeEEEEEcCCC----
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLC----EWGVVGDLIEI-DAGH--DFNSAWADINRAWRILRPGGVIFGHDYFT---- 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~----~l~~~fDLIfI-Da~h--~~~~v~~dl~~~~~lL~pGGvIi~dD~~~---- 290 (327)
+...++.+-..|+.+.......... ....+||.||. .--| ++..+..-++.+-++|++||++++=.-+.
T Consensus 69 ~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~ 148 (204)
T PF06080_consen 69 IAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGK 148 (204)
T ss_pred HHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCE
Confidence 2222332222234432221111111 12368999984 3334 34556677899999999999999833222
Q ss_pred ----------------CCCchhHH--HHHHHHHHHcCCeEE
Q 041517 291 ----------------AADNRGVR--RAVNLFAKINGLKVQ 313 (327)
Q Consensus 291 ----------------~~~~~GV~--~Av~~f~~~~gl~v~ 313 (327)
+|. -|+| +.++.++..+|+++.
T Consensus 149 ~ts~SN~~FD~sLr~rdp~-~GiRD~e~v~~lA~~~GL~l~ 188 (204)
T PF06080_consen 149 FTSESNAAFDASLRSRDPE-WGIRDIEDVEALAAAHGLELE 188 (204)
T ss_pred eCCcHHHHHHHHHhcCCCC-cCccCHHHHHHHHHHCCCccC
Confidence 121 1443 457788888888754
|
The function of this family is unknown. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.6e-05 Score=69.41 Aligned_cols=139 Identities=13% Similarity=0.001 Sum_probs=80.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh--hccCCccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY--QNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~--~g~~~~v~ 232 (327)
...+||..|||.|+-.++||+. +.+|++||+++...+.+.+......... .+.. .-..++
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~----------~~~~~~~~~~~~-- 98 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVT----------SVGGFKRYQAGR-- 98 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECT----------TCTTEEEETTSS--
T ss_pred CCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcc----------cccceeeecCCc--
Confidence 3469999999999999999984 7899999999887765422111000000 0000 001122
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCC-C--CCCcHHHHHHHHHccCCCCeE--EEEEcCCCC----CCchhHHHHHHH
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAG-H--DFNSAWADINRAWRILRPGGV--IFGHDYFTA----ADNRGVRRAVNL 303 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~-h--~~~~v~~dl~~~~~lL~pGGv--Ii~dD~~~~----~~~~GV~~Av~~ 303 (327)
|.+..||..+.=+...++||+|+=-+. + ....-.++.+.+.++|+|||. ++.-++... |.+.--.+.+.+
T Consensus 99 -i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 99 -ITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRE 177 (218)
T ss_dssp -EEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHH
T ss_pred -eEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHH
Confidence 888899877632333358999985433 1 123344678999999999998 555444431 222223455555
Q ss_pred HHHHcCCeEE
Q 041517 304 FAKINGLKVQ 313 (327)
Q Consensus 304 f~~~~gl~v~ 313 (327)
+.. .+++|.
T Consensus 178 l~~-~~f~i~ 186 (218)
T PF05724_consen 178 LFG-PGFEIE 186 (218)
T ss_dssp HHT-TTEEEE
T ss_pred Hhc-CCcEEE
Confidence 555 555544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.8e-05 Score=68.42 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=55.0
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
..|+|+.||.|..++.+|+. ..+|++||+++...+.++. |....|..++ |.+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~------~~~Viaidid~~~~~~a~h-------------------Na~vYGv~~~---I~~ 52 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFART------FDRVIAIDIDPERLECAKH-------------------NAEVYGVADN---IDF 52 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHT------T-EEEEEES-HHHHHHHHH-------------------HHHHTT-GGG---EEE
T ss_pred CEEEEeccCcCHHHHHHHHh------CCeEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEE
Confidence 36999999999999999995 5789999999988888776 6666676666 999
Q ss_pred eecchhhhhhhcC-C-cEeEEEEc
Q 041517 237 SSGSALTKLCEWG-V-VGDLIEID 258 (327)
Q Consensus 237 ~~gda~~~L~~l~-~-~fDLIfID 258 (327)
..||..+.++.+. . .+|+||++
T Consensus 53 i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 53 ICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EES-HHHHGGGB------SEEEE-
T ss_pred EeCCHHHHHhhccccccccEEEEC
Confidence 9999999887753 2 28999998
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.3e-05 Score=69.84 Aligned_cols=105 Identities=13% Similarity=-0.025 Sum_probs=74.6
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
.-.|++||=||-|-|..+.-+.+. + .+|+.||++++..+.++++.. .+.. ++.+.-
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh----~--~~v~mVeID~~Vv~~~k~~lP----------------~~~~-~~~DpR- 125 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY----D--THVDFVQADEKILDSFISFFP----------------HFHE-VKNNKN- 125 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc----C--CeeEEEECCHHHHHHHHHHCH----------------HHHH-hhcCCC-
Confidence 346899999999999999988873 3 499999999999999888542 1111 122211
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+++... ....-.++||+|++|... .. ..++.+.+.|+|||+++..--..
T Consensus 126 -v~l~~~----~~~~~~~~fDVIIvDs~~--~~--~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 126 -FTHAKQ----LLDLDIKKYDLIICLQEP--DI--HKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred -EEEeeh----hhhccCCcCCEEEEcCCC--Ch--HHHHHHHHhcCCCcEEEECCCCc
Confidence 444431 111113689999999753 33 67889999999999999975543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00025 Score=63.61 Aligned_cols=117 Identities=20% Similarity=0.138 Sum_probs=76.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..+.|+|+|||+|..++..+. ++ ..+|+|||+++++.+.++++ ... +.+. |
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~----lG-a~~V~~vdiD~~a~ei~r~N-------------------~~~--l~g~---v 95 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL----LG-ASRVLAVDIDPEALEIARAN-------------------AEE--LLGD---V 95 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh----cC-CcEEEEEecCHHHHHHHHHH-------------------HHh--hCCc---e
Confidence 467899999999999998775 34 58999999999999988874 332 2223 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC---CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD---FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~---~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
++...|..+ ...++|.++.+--.. ...=+..++.+++.- ..+--+| .-|.+..+..++...|.+
T Consensus 96 ~f~~~dv~~----~~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s--~vVYsiH-------~a~~~~f~~~~~~~~G~~ 162 (198)
T COG2263 96 EFVVADVSD----FRGKFDTVIMNPPFGSQRRHADRPFLLKALEIS--DVVYSIH-------KAGSRDFVEKFAADLGGT 162 (198)
T ss_pred EEEEcchhh----cCCccceEEECCCCccccccCCHHHHHHHHHhh--heEEEee-------ccccHHHHHHHHHhcCCe
Confidence 787777554 356788888873211 111123344444432 1222233 345789999999999866
Q ss_pred EE
Q 041517 312 VQ 313 (327)
Q Consensus 312 v~ 313 (327)
+.
T Consensus 163 v~ 164 (198)
T COG2263 163 VT 164 (198)
T ss_pred EE
Confidence 54
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.7e-05 Score=69.36 Aligned_cols=113 Identities=9% Similarity=-0.091 Sum_probs=71.0
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCc--cccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM--VNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~--~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++||..|||.|.-++|||+. +.+|++||+++...+.+.+...... ..+. ......+ ..
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~--------~~~~~~~-----~~ 104 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGN--------DYKLYKG-----DD 104 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceeccc--------ccceecc-----Cc
Confidence 479999999999999999984 7789999999987764422111110 0000 0000001 12
Q ss_pred eEeeecchhhhhh--hcCCcEeEEEEcCCC-CC--CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLC--EWGVVGDLIEIDAGH-DF--NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~--~l~~~fDLIfIDa~h-~~--~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
|.+..+|..+.=+ ...+.||+|+--+.. .. +.-.++.+.+.++|+|||.+++--
T Consensus 105 i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 105 IEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred eEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 7888888766311 223689998865431 12 223457889999999999665443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=68.96 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.1
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
++..+++.. +..+|||||||.|..|..++.. ..+|+++|+++.+.+.+++ ++
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~-------------------~~ 78 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKK-------------------RF 78 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHH-------------------HH
Confidence 444444432 4578999999999999999874 5689999999999887765 22
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHH
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAW 274 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~ 274 (327)
...+..++ +++..+|+.+. .+ ..||.|+. +.+|+-....+..++
T Consensus 79 ~~~~~~~~---v~ii~~Dal~~--~~-~~~d~Vva--NlPY~Istpil~~ll 122 (294)
T PTZ00338 79 QNSPLASK---LEVIEGDALKT--EF-PYFDVCVA--NVPYQISSPLVFKLL 122 (294)
T ss_pred HhcCCCCc---EEEEECCHhhh--cc-cccCEEEe--cCCcccCcHHHHHHH
Confidence 22222223 88889988763 11 35788774 455553333333333
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.78 E-value=5e-05 Score=68.92 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+...|++..||-|++++.+|+. +...+|+++|.++...+..++ |+...++.++ |
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~----~~~~~V~A~d~Np~a~~~L~~-------------------Ni~lNkv~~~---i 154 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKH----GKAKRVYAVDLNPDAVEYLKE-------------------NIRLNKVENR---I 154 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHH----T-SSEEEEEES-HHHHHHHHH-------------------HHHHTT-TTT---E
T ss_pred cceEEEEccCCccHHHHHHhhh----cCccEEEEecCCHHHHHHHHH-------------------HHHHcCCCCe---E
Confidence 4679999999999999999984 447899999999877765544 6666666666 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
....+|+.+.++ ...+|-|+.+--+. ....++.+..++++||+|.+
T Consensus 155 ~~~~~D~~~~~~--~~~~drvim~lp~~---~~~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 155 EVINGDAREFLP--EGKFDRVIMNLPES---SLEFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp EEEES-GGG-----TT-EEEEEE--TSS---GGGGHHHHHHHEEEEEEEEE
T ss_pred EEEcCCHHHhcC--ccccCEEEECChHH---HHHHHHHHHHHhcCCcEEEC
Confidence 778999888765 57899999976542 23678889999999999864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=67.51 Aligned_cols=102 Identities=12% Similarity=0.000 Sum_probs=71.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+++-|||||||+|.|+-.+... +...+++|+++.|.++|.+ . .++ -
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~------Gh~wiGvDiSpsML~~a~~-~-----------------e~e----------g 95 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS------GHQWIGVDISPSMLEQAVE-R-----------------ELE----------G 95 (270)
T ss_pred CCcEEEEeccCCCcchheeccC------CceEEeecCCHHHHHHHHH-h-----------------hhh----------c
Confidence 3789999999999999887763 7899999999999998764 1 111 0
Q ss_pred EeeecchhhhhhhcCCcEeEEEE--------cCCCCCCcHH----HHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI--------DAGHDFNSAW----ADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI--------Da~h~~~~v~----~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.++.+|--+.|+...+.||-+++ .++.+++.+. ..+..++..|++|+.-++.=|-.
T Consensus 96 dlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 96 DLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 12223333455666788887763 4555554433 34667888999999999976654
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0004 Score=67.83 Aligned_cols=127 Identities=19% Similarity=0.205 Sum_probs=97.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|++.=+|-|+.|+.+|.. +. .+|+++|+++...+..++ |+...+..++ |
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~----g~-~~V~A~diNP~A~~~L~e-------------------Ni~LN~v~~~---v 240 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKK----GR-PKVYAIDINPDAVEYLKE-------------------NIRLNKVEGR---V 240 (341)
T ss_pred CCCEEEEccCCcccchhhhhhc----CC-ceEEEEecCHHHHHHHHH-------------------HHHhcCccce---e
Confidence 3679999999999999999985 32 239999999987765554 7776666666 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh-HHHHHHHHHHHcCCeE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRG-VRRAVNLFAKINGLKV 312 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G-V~~Av~~f~~~~gl~v 312 (327)
....||+.+..+.+ +.+|-|++.--+. ....+..+...+++||+|-+++...+....+ +.+.+..++...|.++
T Consensus 241 ~~i~gD~rev~~~~-~~aDrIim~~p~~---a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 241 EPILGDAREVAPEL-GVADRIIMGLPKS---AHEFLPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred eEEeccHHHhhhcc-ccCCEEEeCCCCc---chhhHHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 78899999987665 6799999875542 2367889999999999999999987432222 6788888888776543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=3.2e-05 Score=71.30 Aligned_cols=139 Identities=17% Similarity=0.102 Sum_probs=85.0
Q ss_pred HHHHHHHhhcC---CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKVR---PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~~---p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.+|..++.... -+++|++|||+|.++..+-.+ -.++++||+++.|.+.|.+.. .|++
T Consensus 112 ~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~------a~~ltGvDiS~nMl~kA~eKg----------~YD~---- 171 (287)
T COG4976 112 ELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM------ADRLTGVDISENMLAKAHEKG----------LYDT---- 171 (287)
T ss_pred HHHHHHHHhccCCccceeeecccCcCcccHhHHHH------HhhccCCchhHHHHHHHHhcc----------chHH----
Confidence 45666665554 368999999999999888765 467899999999999887632 1111
Q ss_pred HhhhccCCcccceEeeecchhhhhh-hcCCcEeEEEEcCCCCCCcHH-HHHHHHHccCCCCeEEEEEcCCC---------
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLC-EWGVVGDLIEIDAGHDFNSAW-ADINRAWRILRPGGVIFGHDYFT--------- 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~-~l~~~fDLIfIDa~h~~~~v~-~dl~~~~~lL~pGGvIi~dD~~~--------- 290 (327)
+. ++++...+. .-+++||+|.----..|-..+ .-+-.+..+|+|||.++|.-=--
T Consensus 172 L~--------------~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ 237 (287)
T COG4976 172 LY--------------VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLG 237 (287)
T ss_pred HH--------------HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecc
Confidence 11 111111122 114688988631111121111 22445677999999999852211
Q ss_pred -CCCchhHHHHHHHHHHHcCCeEEEccc
Q 041517 291 -AADNRGVRRAVNLFAKINGLKVQIDGQ 317 (327)
Q Consensus 291 -~~~~~GV~~Av~~f~~~~gl~v~~~gq 317 (327)
+..|--....|...+...|+.+..+.+
T Consensus 238 ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 238 PSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred hhhhhccchHHHHHHHHhcCceEEEeec
Confidence 112223567788889999998775544
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00013 Score=67.03 Aligned_cols=99 Identities=20% Similarity=0.232 Sum_probs=70.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||.|.|..+..+++. .|+.+++.+|. ++..+.+++ .++ |
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~v~~~~~~--------------------------~~r---v 145 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARA----YPNLRATVFDL-PEVIEQAKE--------------------------ADR---V 145 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHH----STTSEEEEEE--HHHHCCHHH--------------------------TTT---E
T ss_pred CccEEEeccCcchHHHHHHHHH----CCCCcceeecc-Hhhhhcccc--------------------------ccc---c
Confidence 4679999999999999999985 45889999998 222221111 334 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCC--CcHHHHHHHHHccCCCC--eEEEEEcCCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDF--NSAWADINRAWRILRPG--GVIFGHDYFTA 291 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~--~~v~~dl~~~~~lL~pG--GvIi~dD~~~~ 291 (327)
++..||..+.+ +. +|++++-. -|.+ +....-|+.+.+.|+|| |.|++.|+..+
T Consensus 146 ~~~~gd~f~~~---P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 146 EFVPGDFFDPL---PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp EEEES-TTTCC---SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred ccccccHHhhh---cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence 89889876544 34 99999853 3444 44566799999999999 99999998863
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00065 Score=65.97 Aligned_cols=77 Identities=4% Similarity=-0.174 Sum_probs=53.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~v~~V 234 (327)
..+|||||||+|..+..++.. . ++.+++++|+++...+.|++ |+... ++.++ |
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~---~-~~~~~~atDId~~Al~~A~~-------------------Nv~~Np~l~~~---I 168 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVH---E-YGWRFVGSDIDPQALASAQA-------------------IISANPGLNGA---I 168 (321)
T ss_pred CceEEEecCCccHHHHHHHhh---C-CCCEEEEEeCCHHHHHHHHH-------------------HHHhccCCcCc---E
Confidence 478999999999888777763 2 36899999999999998877 44444 45445 5
Q ss_pred Eeee-cchhhhhhh---cCCcEeEEEEc
Q 041517 235 PFSS-GSALTKLCE---WGVVGDLIEID 258 (327)
Q Consensus 235 ~~~~-gda~~~L~~---l~~~fDLIfID 258 (327)
.+.. .+..+.+.. .++.||+|+..
T Consensus 169 ~~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 169 RLRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EEEEccchhhhhhcccccCCceEEEEeC
Confidence 5542 333333222 24689999875
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=71.25 Aligned_cols=105 Identities=18% Similarity=0.214 Sum_probs=73.5
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.+.||+||||+|-.+++-|++ | -.+|++||.+.-+ +.|++. +...++.+.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA----G-A~~V~aVe~S~ia-~~a~~i-------------------v~~N~~~~i-- 110 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA----G-ARKVYAVEASSIA-DFARKI-------------------VKDNGLEDV-- 110 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh----C-cceEEEEechHHH-HHHHHH-------------------HHhcCccce--
Confidence 457899999999999999999986 4 6899999997644 555542 223344444
Q ss_pred ceEeeecchhhhhhhcC-CcEeEEEEcCC---CCCCcHHHHHHHH-HccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEWG-VVGDLIEIDAG---HDFNSAWADINRA-WRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~-~~fDLIfIDa~---h~~~~v~~dl~~~-~~lL~pGGvIi~dD 287 (327)
|.+.+|...+. .++ ++.|.|..... .-++.++..+-.+ -+.|+|||+|.=+-
T Consensus 111 -i~vi~gkvEdi--~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~ 167 (346)
T KOG1499|consen 111 -ITVIKGKVEDI--ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDR 167 (346)
T ss_pred -EEEeecceEEE--ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEcccc
Confidence 78888877774 444 89999988753 2345555544333 45799999986443
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00011 Score=63.85 Aligned_cols=83 Identities=13% Similarity=0.173 Sum_probs=60.3
Q ss_pred EEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCc
Q 041517 187 LCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNS 265 (327)
Q Consensus 187 ~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~ 265 (327)
+++|++++|.+.|++... ....+...+ +++..+++.+ ++..+++||+|++... |..++
T Consensus 1 ~GvD~S~~ML~~A~~~~~-----------------~~~~~~~~~---i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~~d 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQS-----------------LKARSCYKC---IEWIEGDAID-LPFDDCEFDAVTMGYGLRNVVD 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhh-----------------cccccCCCc---eEEEEechhh-CCCCCCCeeEEEecchhhcCCC
Confidence 479999999998865321 001011112 8888998765 4655679999998643 43466
Q ss_pred HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 266 AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 266 v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
....++++.+.|+|||.+++.|+..
T Consensus 60 ~~~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 60 RLRAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 7788999999999999999999875
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0014 Score=62.64 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=95.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCC-CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGL-DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~-~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
-+|-+||+|-||.|.=-+-..+ ..+. ...|...|.++...+..++ -+...|+.+.
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~---~~~~~~~~i~LrDys~~Nv~~g~~-------------------li~~~gL~~i-- 189 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALE---KHPERPDSILLRDYSPINVEKGRA-------------------LIAERGLEDI-- 189 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHH---hCCCCCceEEEEeCCHHHHHHHHH-------------------HHHHcCCccc--
Confidence 4688999999999987555444 3443 4689999998877665544 2334455544
Q ss_pred ceEeeecchhhh--hhhcCCcEeEEEEcCCCCC---Cc-HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 233 PVPFSSGSALTK--LCEWGVVGDLIEIDAGHDF---NS-AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 233 ~V~~~~gda~~~--L~~l~~~fDLIfIDa~h~~---~~-v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
++|..+|+.+. +..+....+++++-|-++. +. +...+..+...+.|||++|...--|.|.-+-+.+++.
T Consensus 190 -~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lt---- 264 (311)
T PF12147_consen 190 -ARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLT---- 264 (311)
T ss_pred -eEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHh----
Confidence 68999988764 5556677899999887654 22 5556888999999999999999888765444444432
Q ss_pred HcCCeEEEccceEEEec
Q 041517 307 INGLKVQIDGQHWVIHS 323 (327)
Q Consensus 307 ~~gl~v~~~gq~w~i~~ 323 (327)
-+..|+.|+..+
T Consensus 265 -----sHr~g~~WvMRr 276 (311)
T PF12147_consen 265 -----SHRDGKAWVMRR 276 (311)
T ss_pred -----cccCCCceEEEe
Confidence 233466666543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00027 Score=63.64 Aligned_cols=122 Identities=7% Similarity=0.058 Sum_probs=80.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||.|....+|.+. .+.+.++||+++..... ....| +.
T Consensus 14 gsrVLDLGCGdG~LL~~L~~~-----k~v~g~GvEid~~~v~~-----------------------cv~rG-------v~ 58 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKDE-----KQVDGYGVEIDPDNVAA-----------------------CVARG-------VS 58 (193)
T ss_pred CCEEEecCCCchHHHHHHHHh-----cCCeEEEEecCHHHHHH-----------------------HHHcC-------CC
Confidence 479999999999988777763 37889999998754321 11223 56
Q ss_pred eeecchhhhhhhc-CCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCCC---------------CC------
Q 041517 236 FSSGSALTKLCEW-GVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYFT---------------AA------ 292 (327)
Q Consensus 236 ~~~gda~~~L~~l-~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~---------------~~------ 292 (327)
..++|..+.|..+ +.+||.|++--..+ ...+..-|++++|. ..-++|-|-+... +.
T Consensus 59 Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV-gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W 137 (193)
T PF07021_consen 59 VIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRV-GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW 137 (193)
T ss_pred EEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHh-cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 6788888878765 58999999754332 12234556666543 3346777777632 00
Q ss_pred -Cchh----HHHHHHHHHHHcCCeEE
Q 041517 293 -DNRG----VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 -~~~G----V~~Av~~f~~~~gl~v~ 313 (327)
+.|. .-+-+++||++.|++|.
T Consensus 138 YdTPNih~~Ti~DFe~lc~~~~i~I~ 163 (193)
T PF07021_consen 138 YDTPNIHLCTIKDFEDLCRELGIRIE 163 (193)
T ss_pred cCCCCcccccHHHHHHHHHHCCCEEE
Confidence 1122 33667899999999886
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0019 Score=63.50 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
++-..++.-....+|||....-|.=|.+||+.++ +.+..|+++|.++.-.... .+|+..
T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~--~~~~iV~A~D~~~~Rl~~l-------------------~~nl~R 204 (355)
T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELME--NEGAIVVAVDVSPKRLKRL-------------------RENLKR 204 (355)
T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcC--CCCceEEEEcCCHHHHHHH-------------------HHHHHH
Confidence 3444455444568999999999999999999743 2245669999986533322 336666
Q ss_pred hccCCcccceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRP 279 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~p 279 (327)
.|..+ +.....|+......+ ..+||.|.+|+--+... -.+-|+.++++|+|
T Consensus 205 lG~~n----v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~ 280 (355)
T COG0144 205 LGVRN----VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP 280 (355)
T ss_pred cCCCc----eEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 66543 344444443321122 23699999996533211 23447889999999
Q ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEEE
Q 041517 280 GGVIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQI 314 (327)
Q Consensus 280 GGvIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~~ 314 (327)
||+|+...+-..+. .=.+-|..|.+++ ++++..
T Consensus 281 GG~LVYSTCS~~~e--ENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 281 GGVLVYSTCSLTPE--ENEEVVERFLERHPDFELEP 314 (355)
T ss_pred CCEEEEEccCCchh--cCHHHHHHHHHhCCCceeec
Confidence 99999999987431 1123344555443 444443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00029 Score=67.59 Aligned_cols=78 Identities=13% Similarity=-0.006 Sum_probs=56.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.+.+||++||.|.-|..+++. +++.++|++||.++.+.+.+++.. .. .++ +
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~---~~~~g~VigiD~D~~al~~ak~~L-------------------~~---~~r---i 70 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILER---LGPKGRLIAIDRDPDAIAAAKDRL-------------------KP---FGR---F 70 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHh---CCCCCEEEEEcCCHHHHHHHHHhh-------------------cc---CCc---E
Confidence 3469999999999999999985 566899999999999998776521 11 122 6
Q ss_pred EeeecchhhhhhhcC---CcEeEEEEcCC
Q 041517 235 PFSSGSALTKLCEWG---VVGDLIEIDAG 260 (327)
Q Consensus 235 ~~~~gda~~~L~~l~---~~fDLIfIDa~ 260 (327)
.+..++..+....+. .++|.|++|-+
T Consensus 71 ~~i~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 71 TLVHGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred EEEeCCHHHHHHHHHcCCCccCEEEECCC
Confidence 666776665433332 26888888844
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00036 Score=62.56 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=70.5
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hccCCcccceEe
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNAIDSVLPVPF 236 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~~~~v~~V~~ 236 (327)
+++|||||.|.=++.+|-+ .|+.+++.+|....-. .|++++.. -++. + +..
T Consensus 51 ~~lDiGSGaGfPGipLaI~----~p~~~~~LvEs~~KK~--------------------~FL~~~~~~L~L~-n---v~v 102 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIA----RPDLQVTLVESVGKKV--------------------AFLKEVVRELGLS-N---VEV 102 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-----TTSEEEEEESSHHHH--------------------HHHHHHHHHHT-S-S---EEE
T ss_pred eEEecCCCCCChhHHHHHh----CCCCcEEEEeCCchHH--------------------HHHHHHHHHhCCC-C---EEE
Confidence 7999999999999999985 4689999999954322 24444432 2443 2 778
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+.+.+ +.....||+|..-|-. +....++.+.+++++||.+++-
T Consensus 103 ~~~R~E~--~~~~~~fd~v~aRAv~---~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 103 INGRAEE--PEYRESFDVVTARAVA---PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp EES-HHH--TTTTT-EEEEEEESSS---SHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEeeecc--cccCCCccEEEeehhc---CHHHHHHHHHHhcCCCCEEEEE
Confidence 8888777 4456899999999875 3446889999999999988874
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00065 Score=63.30 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+..+|||||||+|..+..|++. ..+++++|.++.+.+.+++
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~------~~~v~~iE~d~~~~~~l~~ 69 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKR------AKKVTAIEIDPRLAEILRK 69 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHh------CCcEEEEECCHHHHHHHHH
Confidence 4679999999999999999985 3469999999988876654
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00078 Score=69.24 Aligned_cols=103 Identities=15% Similarity=0.029 Sum_probs=68.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
...+||||||.|.+++.+|.. .|+..+++||........+-+ .+...++. + +.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~----~p~~~~iGiE~~~~~~~~~~~-------------------~~~~~~l~-N---~~ 400 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKM----NPDALFIGVEVYLNGVANVLK-------------------LAGEQNIT-N---FL 400 (506)
T ss_pred CceEEEECCCchHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHH-------------------HHHHcCCC-e---EE
Confidence 467999999999999999984 668999999998754432211 22222321 1 66
Q ss_pred eeecchhhhhhhc-CCcEeEEEEcCC-------CCCCc--HHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEW-GVVGDLIEIDAG-------HDFNS--AWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l-~~~fDLIfIDa~-------h~~~~--v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+++......+ +.++|-|||--. |...- -...++.+.++|+|||.|-+
T Consensus 401 ~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 401 LFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 6666654433333 467999998522 21100 12568999999999997765
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00071 Score=61.78 Aligned_cols=130 Identities=17% Similarity=0.143 Sum_probs=73.7
Q ss_pred hhccCCch--HHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccch
Q 041517 135 RRIKGWGS--YGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212 (327)
Q Consensus 135 ~~~~gw~~--~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~ 212 (327)
.+...|+. ...+++.|.+.-+...|.|+|||.+..| ++ ++...+|+++|.-..-..+..-
T Consensus 50 ~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la----~~---~~~~~~V~SfDLva~n~~Vtac----------- 111 (219)
T PF05148_consen 50 QQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLA----KA---VPNKHKVHSFDLVAPNPRVTAC----------- 111 (219)
T ss_dssp HHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHH----HH-----S---EEEEESS-SSTTEEES-----------
T ss_pred HHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHH----Hh---cccCceEEEeeccCCCCCEEEe-----------
Confidence 35667833 3456666655444569999999988776 32 3346789999995532211100
Q ss_pred HHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC
Q 041517 213 LLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 213 ~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
++.. + |-.++..|+++.--..-.......+++++|+|||||.+.+-++..
T Consensus 112 --------dia~---------v-----------PL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~S-- 161 (219)
T PF05148_consen 112 --------DIAN---------V-----------PLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKS-- 161 (219)
T ss_dssp ---------TTS---------------------S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGG--
T ss_pred --------cCcc---------C-----------cCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecc--
Confidence 1100 2 222467888876655544556689999999999999999999986
Q ss_pred CchhHHHHHHHHHHHcCCeEE
Q 041517 293 DNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 ~~~GV~~Av~~f~~~~gl~v~ 313 (327)
.+..+.++++.+ ...|+++.
T Consensus 162 Rf~~~~~F~~~~-~~~GF~~~ 181 (219)
T PF05148_consen 162 RFENVKQFIKAL-KKLGFKLK 181 (219)
T ss_dssp G-S-HHHHHHHH-HCTTEEEE
T ss_pred cCcCHHHHHHHH-HHCCCeEE
Confidence 466787776665 45677654
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00038 Score=59.34 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=32.3
Q ss_pred CCCEEEEEcCcchH-HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGA-SALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~-Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+..+|||||||.|. .+..|++. +.+|+++|.++...+.+++
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKK 57 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHH
Confidence 45789999999997 66677763 7899999999986654443
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00053 Score=66.51 Aligned_cols=106 Identities=17% Similarity=0.225 Sum_probs=76.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.+.|||+|||+|..+...|.+ | ..+||+||.+ +|.+.|++.. ...++.++ |
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA----G-A~~vYAvEAS-~MAqyA~~Lv-------------------~~N~~~~r---I 228 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA----G-AKKVYAVEAS-EMAQYARKLV-------------------ASNNLADR---I 228 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh----C-cceEEEEehh-HHHHHHHHHH-------------------hcCCccce---E
Confidence 4688999999999999998885 3 6789999986 4666776532 11234556 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC---CCCCcHHHHHHHHHccCCCCeEEE--EEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG---HDFNSAWADINRAWRILRPGGVIF--GHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~---h~~~~v~~dl~~~~~lL~pGGvIi--~dD~~~ 290 (327)
..+.|..++. +++++.|+|+..-. .-++.+++.+-.+.+.|+|.|.+. +-|+..
T Consensus 229 tVI~GKiEdi--eLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHl 287 (517)
T KOG1500|consen 229 TVIPGKIEDI--ELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHL 287 (517)
T ss_pred EEccCccccc--cCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceee
Confidence 7777776663 56789999987632 234567777778889999999876 444443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00049 Score=64.98 Aligned_cols=86 Identities=14% Similarity=0.087 Sum_probs=57.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..|..+++. ..+|+++|.++.+.+.+++. +.. ++ +
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~------~~~v~avE~d~~~~~~~~~~-------------------~~~----~~---v 89 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLER------AAKVTAVEIDRDLAPILAET-------------------FAE----DN---L 89 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHh------CCcEEEEECCHHHHHHHHHh-------------------hcc----Cc---e
Confidence 4579999999999999999985 34899999999998876542 111 12 7
Q ss_pred EeeecchhhhhhhcCCc-EeEEEEcCCCCCCcHHHHHHHHHcc
Q 041517 235 PFSSGSALTKLCEWGVV-GDLIEIDAGHDFNSAWADINRAWRI 276 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~-fDLIfIDa~h~~~~v~~dl~~~~~l 276 (327)
.+..+|+.+. . ++.. +|.|+ ++.+|+.....+..++..
T Consensus 90 ~~i~~D~~~~-~-~~~~~~~~vv--~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 90 TIIEGDALKV-D-LSELQPLKVV--ANLPYNITTPLLFHLLEE 128 (272)
T ss_pred EEEEChhhcC-C-HHHcCcceEE--EeCCccchHHHHHHHHhc
Confidence 7778877653 1 1111 34444 455666555556666543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00083 Score=63.84 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=64.4
Q ss_pred CCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
|++|+=|||| .-.++++|++. .+.+..+++||.++...+.+++.. + ...++..+ +
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~---~~~~~~v~~iD~d~~A~~~a~~lv----------------~--~~~~L~~~---m 176 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQ---HGPGARVHNIDIDPEANELARRLV----------------A--SDLGLSKR---M 176 (276)
T ss_dssp --EEEEE---SS-HHHHHHH-----HTT--EEEEEESSHHHHHHHHHHH----------------H-----HH-SS---E
T ss_pred cceEEEEcCCCcchHHHHHHHH---hCCCCeEEEEeCCHHHHHHHHHHH----------------h--hcccccCC---e
Confidence 5799999998 77889999973 456889999999998888776521 1 01234444 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC--CCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD--FNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~--~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.|..+|..+.-..+ ..||+||+-+--. .++-.+-++.+.+.++||++|++-
T Consensus 177 ~f~~~d~~~~~~dl-~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 177 SFITADVLDVTYDL-KEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEES-GGGG-GG-----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEecchhcccccc-ccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 89888876642222 5799999986542 235567899999999999999997
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00096 Score=61.18 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=80.0
Q ss_pred ccCCchHHHHHHHHHhh--cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 137 IKGWGSYGAVFGNLIDK--VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 137 ~~gw~~~g~lL~~L~~~--~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
+..| ++ ++|..+++. .+.++||+||-|.|-..-.+-++ + .-+-+-||..++....-+... .
T Consensus 83 Mm~W-Et-piMha~A~ai~tkggrvLnVGFGMgIidT~iQe~----~-p~~H~IiE~hp~V~krmr~~g---w------- 145 (271)
T KOG1709|consen 83 MMRW-ET-PIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEA----P-PDEHWIIEAHPDVLKRMRDWG---W------- 145 (271)
T ss_pred hhhh-hh-HHHHHHHHHHhhCCceEEEeccchHHHHHHHhhc----C-CcceEEEecCHHHHHHHHhcc---c-------
Confidence 3456 22 344444432 57899999999999888777763 3 456677888776543322211 0
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...++|+++.-.-.|.+..|+ +..||=|+.|.- -.|++.++..+.+.++|+|+|++-+-+..-
T Consensus 146 -----------~ek~nViil~g~WeDvl~~L~--d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 146 -----------REKENVIILEGRWEDVLNTLP--DKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred -----------ccccceEEEecchHhhhcccc--ccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 012333333333334444433 367999999986 446778888899999999999998776653
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00078 Score=62.36 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPG 197 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~ 197 (327)
+.++|||+|||+|..+.++++. + ..+|++||+.+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~----g-a~~v~avD~~~~~l~ 112 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK----G-AKEVYGVDVGYNQLA 112 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc----C-CCEEEEEeCCHHHHH
Confidence 4568999999999999999983 3 478999999996654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00055 Score=69.42 Aligned_cols=135 Identities=16% Similarity=0.085 Sum_probs=82.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hccCCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~~~~v~~V 234 (327)
-+.+||||||.|.++..|.+. +-...++-...++.... + +.. .| |
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r------~V~t~s~a~~d~~~~qv-q--------------------faleRG-------v 163 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER------NVTTMSFAPNDEHEAQV-Q--------------------FALERG-------V 163 (506)
T ss_pred eEEEEeccceeehhHHHHhhC------CceEEEcccccCCchhh-h--------------------hhhhcC-------c
Confidence 367999999999999998873 55555555554443211 0 110 12 1
Q ss_pred Eeeec-chhhhhhhcCCcEeEEEEc----CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC----CCchhHHHHHHHHH
Q 041517 235 PFSSG-SALTKLCEWGVVGDLIEID----AGHDFNSAWADINRAWRILRPGGVIFGHDYFTA----ADNRGVRRAVNLFA 305 (327)
Q Consensus 235 ~~~~g-da~~~L~~l~~~fDLIfID----a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~----~~~~GV~~Av~~f~ 305 (327)
....+ -+...||.....||+||.- ..+.+.. -.|-++-|+|||||+.+...---. .+......++.+++
T Consensus 164 pa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g--~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~ 241 (506)
T PF03141_consen 164 PAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDG--FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLA 241 (506)
T ss_pred chhhhhhccccccCCccchhhhhcccccccchhccc--ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHH
Confidence 11111 1234567767899999853 2233333 467888999999999988655322 23456788888888
Q ss_pred HHcCCeEE-EccceEEEecccC
Q 041517 306 KINGLKVQ-IDGQHWVIHSAVN 326 (327)
Q Consensus 306 ~~~gl~v~-~~gq~w~i~~~~~ 326 (327)
+..-++.. ..++-=+-.+|.|
T Consensus 242 ~~lCW~~va~~~~~aIwqKp~~ 263 (506)
T PF03141_consen 242 KSLCWKKVAEKGDTAIWQKPTN 263 (506)
T ss_pred HHHHHHHheeeCCEEEEeccCC
Confidence 88877633 4455444455554
|
; GO: 0008168 methyltransferase activity |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0017 Score=59.09 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=82.4
Q ss_pred EEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeee
Q 041517 159 IIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSS 238 (327)
Q Consensus 159 VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~ 238 (327)
|+||||--||..++|++. +.-.+++++|+.++-.+.|++ |+...|+.++ |.++.
T Consensus 1 vaDIGtDHgyLpi~L~~~----~~~~~~ia~DI~~gpL~~A~~-------------------~i~~~~l~~~---i~~rl 54 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN----GKAPKAIAVDINPGPLEKAKE-------------------NIAKYGLEDR---IEVRL 54 (205)
T ss_dssp EEEET-STTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHH-------------------HHHHTT-TTT---EEEEE
T ss_pred CceeccchhHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHcCCccc---EEEEE
Confidence 689999999999999984 556789999999987776665 6777777777 89999
Q ss_pred cchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 239 GSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 239 gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+|+++.|+. ++..|.|.|-|.= ..-..+-|+.....++....+|+.-... ...++.+..++|+.+.
T Consensus 55 gdGL~~l~~-~e~~d~ivIAGMG-G~lI~~ILe~~~~~~~~~~~lILqP~~~-------~~~LR~~L~~~gf~I~ 120 (205)
T PF04816_consen 55 GDGLEVLKP-GEDVDTIVIAGMG-GELIIEILEAGPEKLSSAKRLILQPNTH-------AYELRRWLYENGFEII 120 (205)
T ss_dssp -SGGGG--G-GG---EEEEEEE--HHHHHHHHHHTGGGGTT--EEEEEESS--------HHHHHHHHHHTTEEEE
T ss_pred CCcccccCC-CCCCCEEEEecCC-HHHHHHHHHhhHHHhccCCeEEEeCCCC-------hHHHHHHHHHCCCEEE
Confidence 999887754 2347999997653 2345566777777777666777744432 4667788888998865
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00051 Score=62.15 Aligned_cols=132 Identities=20% Similarity=0.086 Sum_probs=68.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhcc-----CCCCcEEEEEeCCCCChhhhhhhc--ccCccccchHHHHHHHHHHhh--h
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQ-----LGLDSQILCIDDFRGWPGFRDKFK--EIPMVNGNVLLYFQFLQNVIY--Q 225 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~-----l~~~~~V~~ID~~~~~~~~A~~~~--~~~~~~g~~~~~~~Fl~nv~~--~ 225 (327)
++-+|.-.||.+|.=+..||..+.. .+.+-+|++.|+++...+.|++-. ...+..-......++...... .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4679999999999766665555544 122569999999999998887622 111111111222222200000 0
Q ss_pred ccCCcc-cceEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 226 NAIDSV-LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 226 g~~~~v-~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
...+.+ ..|.|...+-.+ .....+.||+||.---.-| +.....++.+...|+|||++++-.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 000001 017777776555 1223478999998643222 334567899999999999999843
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0036 Score=59.61 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=90.4
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++.......|||++++-|.=|..+|+. ++..++|+++|.++.-.... .+|+...
T Consensus 76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~---~~~~g~i~A~D~~~~Rl~~l-------------------~~~~~r~ 133 (283)
T PF01189_consen 76 LVALALDPQPGERVLDMCAAPGGKTTHLAEL---MGNKGEIVANDISPKRLKRL-------------------KENLKRL 133 (283)
T ss_dssp HHHHHHTTTTTSEEEESSCTTSHHHHHHHHH---TTTTSEEEEEESSHHHHHHH-------------------HHHHHHT
T ss_pred cccccccccccccccccccCCCCceeeeeec---ccchhHHHHhccCHHHHHHH-------------------HHHHHhc
Confidence 3344445555679999999999999999997 45589999999976433221 2355555
Q ss_pred ccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCC-------c----------------HHHHHHHHHccC----
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFN-------S----------------AWADINRAWRIL---- 277 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~-------~----------------v~~dl~~~~~lL---- 277 (327)
|... +.....|+....+.. ...||.|.+|+--+.. . -.+-|+.+.+.+
T Consensus 134 g~~~----v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~ 209 (283)
T PF01189_consen 134 GVFN----VIVINADARKLDPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDF 209 (283)
T ss_dssp T-SS----EEEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHB
T ss_pred CCce----EEEEeeccccccccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccc
Confidence 5432 555557776654433 3469999999653321 1 133478899999
Q ss_pred CCCeEEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 278 RPGGVIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 278 ~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
+|||+||...+-..+ ..=.+.|+.|.+.+ .+++.
T Consensus 210 k~gG~lvYsTCS~~~--eENE~vV~~fl~~~~~~~l~ 244 (283)
T PF01189_consen 210 KPGGRLVYSTCSLSP--EENEEVVEKFLKRHPDFELV 244 (283)
T ss_dssp EEEEEEEEEESHHHG--GGTHHHHHHHHHHSTSEEEE
T ss_pred cCCCeEEEEeccHHH--HHHHHHHHHHHHhCCCcEEE
Confidence 999999998886522 11123455555544 44443
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=56.64 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=63.4
Q ss_pred EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCC-cEeEEEEc-----
Q 041517 185 QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGV-VGDLIEID----- 258 (327)
Q Consensus 185 ~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~-~fDLIfID----- 258 (327)
+|+++|+-++..+..++ .+...+..++ |.+....=......... ++|++...
T Consensus 1 kVyaFDIQ~~Ai~~T~~-------------------rL~~~~~~~~---v~li~~sHe~l~~~i~~~~v~~~iFNLGYLP 58 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRE-------------------RLEEAGLEDR---VTLILDSHENLDEYIPEGPVDAAIFNLGYLP 58 (140)
T ss_dssp EEEEEES-HHHHHHHHH-------------------HHHHTT-GSG---EEEEES-GGGGGGT--S--EEEEEEEESB-C
T ss_pred CEEEEECHHHHHHHHHH-------------------HHHhcCCCCc---EEEEECCHHHHHhhCccCCcCEEEEECCcCC
Confidence 68999997776665544 3444444444 77766543332222344 89988865
Q ss_pred -CCCCC----CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 259 -AGHDF----NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 259 -a~h~~----~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
+||.- +.....++.++++|+|||+|++.=|.-.+.-..-.++|.+|+....
T Consensus 59 ggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 59 GGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp TS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 55543 4478889999999999999999877643322226789999998743
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0026 Score=57.98 Aligned_cols=115 Identities=13% Similarity=0.072 Sum_probs=66.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+....+|||||.|...+..|... .-.+.+|||+.+...+.|+... ..|.+.+...|. +..++
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~----~~~~~~GIEi~~~~~~~a~~~~------------~~~~~~~~~~g~--~~~~v 103 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQT----GCKKSVGIEILPELHDLAEELL------------EELKKRMKHYGK--RPGKV 103 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH------SEEEEEE-SHHHHHHHHHHH------------HHHHHHHHHCTB-----EE
T ss_pred CCCEEEECCCCCCHHHHHHHHHc----CCcEEEEEEechHHHHHHHHHH------------HHHHHHHHHhhc--ccccc
Confidence 35789999999999988877642 2456999999888776665432 122233333232 22347
Q ss_pred Eeeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+..||..+. ...+-...|+||+..--=.++....+...+..|++|..||.-.
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~ 158 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTK 158 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 8888876542 1111134799999865423566778888999999999988643
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00081 Score=62.97 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=35.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+..+|||||||+|..|..+++. ..+|++||.++.+.+.+++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~ 69 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRD 69 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHH
Confidence 4579999999999999999984 4689999999998887665
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0012 Score=58.07 Aligned_cols=121 Identities=14% Similarity=0.126 Sum_probs=66.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||+.|..+-.+++. ..+.++|++||+.+...- +... ...| ++ ..
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~---~~~~~~v~avDl~~~~~~--~~~~---~i~~----------d~-----------~~ 74 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQR---GGPAGRVVAVDLGPMDPL--QNVS---FIQG----------DI-----------TN 74 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTS---TTTEEEEEEEESSSTGS---TTEE---BTTG----------GG-----------EE
T ss_pred ccEEEEcCCcccceeeeeeec---ccccceEEEEeccccccc--ccee---eeec----------cc-----------ch
Confidence 479999999999999999884 345799999999876211 0000 0000 00 00
Q ss_pred eeec-chhhhhhhcCCcEeEEEEcCCCCC------------CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH
Q 041517 236 FSSG-SALTKLCEWGVVGDLIEIDAGHDF------------NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302 (327)
Q Consensus 236 ~~~g-da~~~L~~l~~~fDLIfIDa~h~~------------~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~ 302 (327)
...- ...+.+....+++|+|..|+.... .-....+..+...|+|||.+|+--+.. +....+...+.
T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~-~~~~~~~~~l~ 153 (181)
T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG-PEIEELIYLLK 153 (181)
T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS-TTSHHHHHHHH
T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC-ccHHHHHHHHH
Confidence 0000 111112212368999999983221 113445677788999999777755553 23345555555
Q ss_pred HHHH
Q 041517 303 LFAK 306 (327)
Q Consensus 303 ~f~~ 306 (327)
...+
T Consensus 154 ~~F~ 157 (181)
T PF01728_consen 154 RCFS 157 (181)
T ss_dssp HHHH
T ss_pred hCCe
Confidence 5444
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0066 Score=64.20 Aligned_cols=147 Identities=17% Similarity=0.038 Sum_probs=88.0
Q ss_pred CCEEEEEcCcchHHHHHHHHHhcc---CCC-----CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh--h
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQ---LGL-----DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY--Q 225 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~---l~~-----~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~--~ 225 (327)
.-+|+|+|-|+|++.+...+..+. ..+ .-+++++|.++-..+...+....-.. ...+.+++.+.... .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPE--LAPLAEQLQAQWPLLLP 135 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcc--cHHHHHHHHHhCCccCC
Confidence 468999999999999888876521 122 34889999877433322221100000 01122223222110 1
Q ss_pred cc-----CCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC--CCcHH--HHHHHHHccCCCCeEEEEEcCCCCCCchh
Q 041517 226 NA-----IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD--FNSAW--ADINRAWRILRPGGVIFGHDYFTAADNRG 296 (327)
Q Consensus 226 g~-----~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--~~~v~--~dl~~~~~lL~pGGvIi~dD~~~~~~~~G 296 (327)
|+ .+.-+.+.+..||+.+.++.+...+|.+|.|+-.+ ++.+| +.+..+.++++|||+++--.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t--------- 206 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT--------- 206 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence 11 11112366778999999998877899999998644 34443 45899999999999999632
Q ss_pred HHHHHHHHHHHcCCeEE
Q 041517 297 VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 V~~Av~~f~~~~gl~v~ 313 (327)
+..+|+.-+...|++|.
T Consensus 207 ~a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 207 SAGFVRRGLQEAGFTVR 223 (662)
T ss_pred hHHHHHHHHHHcCCeee
Confidence 23444544555566654
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0021 Score=62.10 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=78.8
Q ss_pred hccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHH
Q 041517 136 RIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLY 215 (327)
Q Consensus 136 ~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~ 215 (327)
...+| ....|+....+ +...++++|||.|.=.+-+-.+ + =+.++|+|+.+...+.|++...
T Consensus 101 nfNNw-IKs~LI~~y~~--~~~~~~~LgCGKGGDLlKw~kA----g-I~~~igiDIAevSI~qa~~RYr----------- 161 (389)
T KOG1975|consen 101 NFNNW-IKSVLINLYTK--RGDDVLDLGCGKGGDLLKWDKA----G-IGEYIGIDIAEVSINQARKRYR----------- 161 (389)
T ss_pred hhhHH-HHHHHHHHHhc--cccccceeccCCcccHhHhhhh----c-ccceEeeehhhccHHHHHHHHH-----------
Confidence 44566 33334443322 3578999999999998888775 2 4689999999998887765211
Q ss_pred HHHHHHHhhhccCCcccceEeeecchhh-hhhh-c---CCcEeEEEEc-CCC----CCCcHHHHHHHHHccCCCCeEEEE
Q 041517 216 FQFLQNVIYQNAIDSVLPVPFSSGSALT-KLCE-W---GVVGDLIEID-AGH----DFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 216 ~~Fl~nv~~~g~~~~v~~V~~~~gda~~-~L~~-l---~~~fDLIfID-a~h----~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
. +.|-.. ..+-++.|..+|... .|-. + +.+||+|-.- +.| +.+.+...+..+.+.|+|||+.|+
T Consensus 162 -d-m~~r~~----~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 162 -D-MKNRFK----KFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred -H-HHhhhh----cccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 0 111111 112236777766432 2222 1 3449988654 222 334566678999999999999998
Q ss_pred E
Q 041517 286 H 286 (327)
Q Consensus 286 d 286 (327)
.
T Consensus 236 T 236 (389)
T KOG1975|consen 236 T 236 (389)
T ss_pred e
Confidence 4
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0041 Score=57.09 Aligned_cols=122 Identities=16% Similarity=0.098 Sum_probs=79.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~v~~V 234 (327)
+.+++|||+|.|.=++.+|-+ .++.+|+.+|....-. .|++.+... ++. . +
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~----~p~~~vtLles~~Kk~--------------------~FL~~~~~eL~L~-n---v 119 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA----FPDLKVTLLESLGKKI--------------------AFLREVKKELGLE-N---V 119 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh----ccCCcEEEEccCchHH--------------------HHHHHHHHHhCCC-C---e
Confidence 689999999999999999963 4577799999965432 355555432 332 1 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
.+..+.+++.-.+... ||+|...|--+- -.-.+++.+++++||.+++-=.. ...|...-.+..+...+..+
T Consensus 120 ~i~~~RaE~~~~~~~~-~D~vtsRAva~L---~~l~e~~~pllk~~g~~~~~k~~---~~~~e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 120 EIVHGRAEEFGQEKKQ-YDVVTSRAVASL---NVLLELCLPLLKVGGGFLAYKGL---AGKDELPEAEKAILPLGGQV 190 (215)
T ss_pred EEehhhHhhccccccc-CcEEEeehccch---HHHHHHHHHhcccCCcchhhhHH---hhhhhHHHHHHHHHhhcCcE
Confidence 7888877764222112 999999886533 34678999999999887642222 23444444555555554443
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.004 Score=58.65 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=81.9
Q ss_pred hccCCch--HHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchH
Q 041517 136 RIKGWGS--YGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVL 213 (327)
Q Consensus 136 ~~~gw~~--~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~ 213 (327)
+...|+. ...++..|-+.-+...|.|+|||.+..|. +...+|+++|+-.--.
T Consensus 159 QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---------~~~~kV~SfDL~a~~~----------------- 212 (325)
T KOG3045|consen 159 QVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---------SERHKVHSFDLVAVNE----------------- 212 (325)
T ss_pred HHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh---------ccccceeeeeeecCCC-----------------
Confidence 5567743 34566666555456789999999887654 2368899999843211
Q ss_pred HHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 214 LYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 214 ~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
+|++..+ .+ +|-.+++.|+++.--..-.......+.++.++|++||.+-+..+.. .
T Consensus 213 ----------------~V~~cDm-----~~-vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~S--R 268 (325)
T KOG3045|consen 213 ----------------RVIACDM-----RN-VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKS--R 268 (325)
T ss_pred ----------------ceeeccc-----cC-CcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhh--h
Confidence 1100111 11 1333567787776544434555678999999999999999999975 5
Q ss_pred chhHHHHHHHHHHHcCCeEE
Q 041517 294 NRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 294 ~~GV~~Av~~f~~~~gl~v~ 313 (327)
++.|+.+++.+ ...|+.+.
T Consensus 269 f~dv~~f~r~l-~~lGF~~~ 287 (325)
T KOG3045|consen 269 FSDVKGFVRAL-TKLGFDVK 287 (325)
T ss_pred cccHHHHHHHH-HHcCCeee
Confidence 67788877766 44566543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0013 Score=64.23 Aligned_cols=134 Identities=13% Similarity=0.098 Sum_probs=74.6
Q ss_pred hccCCchHHHHHHHHHhhc----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccc
Q 041517 136 RIKGWGSYGAVFGNLIDKV----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGN 211 (327)
Q Consensus 136 ~~~gw~~~g~lL~~L~~~~----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~ 211 (327)
...+| -...|+...+... +..+|||+|||.|.=..-|..+ .-..++|+|++...++.|++...
T Consensus 40 ~fNNw-vKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~-----~i~~~vg~Dis~~si~ea~~Ry~------- 106 (331)
T PF03291_consen 40 NFNNW-VKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA-----KIKHYVGIDISEESIEEARERYK------- 106 (331)
T ss_dssp HHHHH-HHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT-----T-SEEEEEES-HHHHHHHHHHHH-------
T ss_pred HHhHH-HHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHH-------
Confidence 33456 3345666666533 4689999999988766666653 26899999999987776654221
Q ss_pred hHHHHHHHHHHhhhccCCcccceEeeecchhh-hhhh-c---CCcEeEEEEcC-CC----CCCcHHHHHHHHHccCCCCe
Q 041517 212 VLLYFQFLQNVIYQNAIDSVLPVPFSSGSALT-KLCE-W---GVVGDLIEIDA-GH----DFNSAWADINRAWRILRPGG 281 (327)
Q Consensus 212 ~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~-~L~~-l---~~~fDLIfIDa-~h----~~~~v~~dl~~~~~lL~pGG 281 (327)
++.++....... ......+..+|... .|.. + ..+||+|-+=- -| +.+.+..-|+.+...|+|||
T Consensus 107 -----~~~~~~~~~~~~-~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG 180 (331)
T PF03291_consen 107 -----QLKKRNNSKQYR-FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGG 180 (331)
T ss_dssp -----HHHTSTT-HTSE-ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred -----Hhcccccccccc-ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Confidence 001000000000 00124555555432 1211 1 25999998753 33 22335567899999999999
Q ss_pred EEEEEcC
Q 041517 282 VIFGHDY 288 (327)
Q Consensus 282 vIi~dD~ 288 (327)
++|+.-.
T Consensus 181 ~FIgT~~ 187 (331)
T PF03291_consen 181 YFIGTTP 187 (331)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9998544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.002 Score=54.81 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=45.3
Q ss_pred HHHHHHHhh----cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDK----VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~----~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+++..+++. .+...|+|+|||.|+.+..++..+....++.+|++||.++...+.+.+
T Consensus 11 ~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 11 ELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred HHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 455555544 567899999999999999999966555578999999999988766554
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0089 Score=53.05 Aligned_cols=123 Identities=15% Similarity=-0.016 Sum_probs=77.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCC-----CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLG-----LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~-----~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
+..|-.++...+...++|--||+|...+..|....... ...+++++|+++.+.+.+++
T Consensus 17 A~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~----------------- 79 (179)
T PF01170_consen 17 AAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE----------------- 79 (179)
T ss_dssp HHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-----------------
T ss_pred HHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-----------------
Confidence 34455555554567999999999999988777543222 12249999999998887766
Q ss_pred HHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC--Cc-------HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF--NS-------AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~~-------v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
|+..++..+. |.+...|+.+. +...+.+|.|+.|--... .. ...-++++.+.+++..++++....
T Consensus 80 --N~~~ag~~~~---i~~~~~D~~~l-~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~ 153 (179)
T PF01170_consen 80 --NLKAAGVEDY---IDFIQWDAREL-PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNR 153 (179)
T ss_dssp --HHHHTT-CGG---EEEEE--GGGG-GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCC
T ss_pred --HHHhcccCCc---eEEEecchhhc-ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 6666666555 88888887763 444579999999943211 11 123357788889997777776543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.007 Score=53.58 Aligned_cols=105 Identities=15% Similarity=0.063 Sum_probs=74.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
....|||+|-|+|..|-.+.+. --++..+++||.++++...-.+... + +
T Consensus 48 sglpVlElGPGTGV~TkaIL~~---gv~~~~L~~iE~~~dF~~~L~~~~p---------------------~-------~ 96 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSR---GVRPESLTAIEYSPDFVCHLNQLYP---------------------G-------V 96 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhc---CCCccceEEEEeCHHHHHHHHHhCC---------------------C-------c
Confidence 4568999999999999998874 3348899999998876653322110 1 4
Q ss_pred Eeeecchhhh---hhh-cCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTK---LCE-WGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~---L~~-l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..||+.+. +.+ .+..||.|+.---... ....+.++.++.+|+.||.++--.|..
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 4556665542 222 3578999987643322 334567899999999999999988874
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.011 Score=57.44 Aligned_cols=121 Identities=12% Similarity=-0.017 Sum_probs=72.1
Q ss_pred HHhhcCC-CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 150 LIDKVRP-RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 150 L~~~~~p-~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
+++..++ ..++|+|||.|.=+..+.+++.......+.++||++..+.+.+.+ ++......
T Consensus 70 Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~-------------------~L~~~~~p 130 (319)
T TIGR03439 70 IAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLA-------------------ELPLGNFS 130 (319)
T ss_pred HHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHH-------------------hhhhccCC
Confidence 3444444 489999999999999988887655557889999999988765533 22211110
Q ss_pred CcccceEeeecchhhh---hhh--cCCcEeEEE-Ec---CCCCCCcHHHHHHHHHc-cCCCCe-EEEEEcCCCC
Q 041517 229 DSVLPVPFSSGSALTK---LCE--WGVVGDLIE-ID---AGHDFNSAWADINRAWR-ILRPGG-VIFGHDYFTA 291 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~---L~~--l~~~fDLIf-ID---a~h~~~~v~~dl~~~~~-lL~pGG-vIi~dD~~~~ 291 (327)
. +.+.-..|+-.+. ++. ......+++ .- |+.+......-|+.+.+ .|+||+ +||.-|...+
T Consensus 131 -~-l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~ 202 (319)
T TIGR03439 131 -H-VRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKD 202 (319)
T ss_pred -C-eEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 0 1133344543333 222 122234554 44 23333445566778888 899976 5666777653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0045 Score=60.44 Aligned_cols=138 Identities=17% Similarity=0.051 Sum_probs=92.4
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+.+|-+|++..+...|||==||||...+..... +.+++++|++..|..-++. |
T Consensus 184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~-------------------N 238 (347)
T COG1041 184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKI-------------------N 238 (347)
T ss_pred HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhh-------------------h
Confidence 45678888887777779999999999998887775 8999999999988876655 5
Q ss_pred HhhhccCCcccceEeeec-chhhhhhhcCCcEeEEEEcCC---CC---CCc----HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSG-SALTKLCEWGVVGDLIEIDAG---HD---FNS----AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~g-da~~~L~~l~~~fDLIfIDa~---h~---~~~----v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...+..+ ..+... |+.+ ++--+..+|-|..|-- .. ... ..+.++.+.++|++||++++---
T Consensus 239 l~~y~i~~----~~~~~~~Da~~-lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-- 311 (347)
T COG1041 239 LEYYGIED----YPVLKVLDATN-LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-- 311 (347)
T ss_pred hhhhCcCc----eeEEEeccccc-CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC--
Confidence 55555322 333344 5544 3422346999999932 11 111 45678999999999998887221
Q ss_pred CCCchhHHHHHHHHHHHcCCeEEEccceE
Q 041517 291 AADNRGVRRAVNLFAKINGLKVQIDGQHW 319 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~~~gl~v~~~gq~w 319 (327)
....+...+.++++...-..|
T Consensus 312 --------~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 312 --------RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred --------CcchhhHhhcCceEEEEEEEe
Confidence 112233355677766544444
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0056 Score=58.59 Aligned_cols=129 Identities=12% Similarity=-0.024 Sum_probs=75.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccC----CCCcEEEEEeCCCCChhhhhhhcc--cCccccchHHHHHHHHHHh-----
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQL----GLDSQILCIDDFRGWPGFRDKFKE--IPMVNGNVLLYFQFLQNVI----- 223 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l----~~~~~V~~ID~~~~~~~~A~~~~~--~~~~~g~~~~~~~Fl~nv~----- 223 (327)
++-+|.-.||.+|-=+..||..+... ..+-+|++.|+++...+.|++-.. ..+..=......++.....
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 34699999999997666666655442 224689999999999998876321 0011001112222221100
Q ss_pred ----hhccCCcccceEeeecchhhh-hhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 224 ----YQNAIDSVLPVPFSSGSALTK-LCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 224 ----~~g~~~~v~~V~~~~gda~~~-L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
...+... |.|...+-.+. .+ ..+.||+||.---.-| +.....++.+...|+|||++++--
T Consensus 195 ~~~v~~~lr~~---V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANY---VDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHcc---CEEEcccCCCCCCc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0011112 66766654441 11 1368999997533222 334567899999999999988743
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0029 Score=58.25 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.+..|++.=||.|..++..|.. ...|++||+++.....|++ |++..|..++ |
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~Akh-------------------NaeiYGI~~r---I 145 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARH-------------------NAEVYGVPDR---I 145 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhc-------------------cceeecCCce---e
Confidence 6789999999999999999974 7889999999998888876 6666787777 9
Q ss_pred EeeecchhhhhhhcC---CcEeEEEEcCCCCCCcH-HHHHHHHHccCCCCeEEE
Q 041517 235 PFSSGSALTKLCEWG---VVGDLIEIDAGHDFNSA-WADINRAWRILRPGGVIF 284 (327)
Q Consensus 235 ~~~~gda~~~L~~l~---~~fDLIfIDa~h~~~~v-~~dl~~~~~lL~pGGvIi 284 (327)
.|+.||.+++...+. ..+|+||.-....+++. ..++.-+.+++.|-|.-+
T Consensus 146 tFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~~~~~ 199 (263)
T KOG2730|consen 146 TFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPMGTKI 199 (263)
T ss_pred EEEechHHHHHHHHhhhhheeeeeecCCCCCCcchhhhhhhhhhhhcchhHHHH
Confidence 999999999877652 45789998766554442 234555666666664333
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=55.92 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=61.8
Q ss_pred HHHHHHHhhcC---CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKVR---PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~~---p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+++... ..+|||||+|.|..|..|++. ..+|++||+++.+.+.-++..
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~------------------ 72 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERF------------------ 72 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhc------------------
Confidence 45566655443 478999999999999999995 678999999988776443311
Q ss_pred HhhhccCCcccceEeeecchhhh-hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTK-LCEWGVVGDLIEIDAGHDFNSAWADINRAWR 275 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~-L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~ 275 (327)
. ..++ +.++.||++.. ++.+. .++.|+ |+.+|+-.-.-+..++.
T Consensus 73 -~---~~~n---~~vi~~DaLk~d~~~l~-~~~~vV--aNlPY~Isspii~kll~ 117 (259)
T COG0030 73 -A---PYDN---LTVINGDALKFDFPSLA-QPYKVV--ANLPYNISSPILFKLLE 117 (259)
T ss_pred -c---cccc---eEEEeCchhcCcchhhc-CCCEEE--EcCCCcccHHHHHHHHh
Confidence 1 1122 77888888773 22211 233443 56667654444444444
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0088 Score=55.17 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=64.1
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+||=+|..+|.+-.+++.. .+++|.||+||.++... ++. + ++.. ...++ |+
T Consensus 74 gskVLYLGAasGTTVSHvSDI---vg~~G~VYaVEfs~r~~---rdL----------------~-~la~--~R~NI--iP 126 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDI---VGPDGVVYAVEFSPRSM---RDL----------------L-NLAK--KRPNI--IP 126 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHH---HTTTSEEEEEESSHHHH---HHH----------------H-HHHH--HSTTE--EE
T ss_pred CCEEEEecccCCCccchhhhc---cCCCCcEEEEEecchhH---HHH----------------H-HHhc--cCCce--ee
Confidence 469999999999999999997 67899999999976321 110 1 2221 11233 33
Q ss_pred eeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+ .+|+... ...+-+.+|+||.|-.++. .+.-....+...|++||.+++
T Consensus 127 I-l~DAr~P~~Y~~lv~~VDvI~~DVaQp~-Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 127 I-LEDARHPEKYRMLVEMVDVIFQDVAQPD-QARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp E-ES-TTSGGGGTTTS--EEEEEEE-SSTT-HHHHHHHHHHHHEEEEEEEEE
T ss_pred e-eccCCChHHhhcccccccEEEecCCChH-HHHHHHHHHHhhccCCcEEEE
Confidence 3 3444431 1223469999999998754 344566788889999996554
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.049 Score=48.96 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=37.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+.-++|||||+|.-+..++.. +++.....+.|+++...+...+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~---i~~~~~~latDiNp~A~~~Tl~ 86 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASV---IGPQALYLATDINPEALEATLE 86 (209)
T ss_pred CceeEEEecCCcchHHHHHHHh---cCCCceEEEecCCHHHHHHHHH
Confidence 3889999999999999999985 6788999999999987765433
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0023 Score=58.77 Aligned_cols=141 Identities=15% Similarity=0.117 Sum_probs=82.6
Q ss_pred HHHHHHHHhhc-----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 144 GAVFGNLIDKV-----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 144 g~lL~~L~~~~-----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
..||..|.... +..+.||+|+|-|.-|-.+.. +--.+|-.||..+.+.+.|+++...
T Consensus 39 ~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl-----~~f~~VDlVEp~~~Fl~~a~~~l~~------------- 100 (218)
T PF05891_consen 39 RNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLL-----PVFDEVDLVEPVEKFLEQAKEYLGK------------- 100 (218)
T ss_dssp HHHHHCCCT---------SEEEEET-TTTHHHHHTCC-----CC-SEEEEEES-HHHHHHHHHHTCC-------------
T ss_pred HHHHHHHHhhcccCCCCcceEEecccccchhHHHHHH-----HhcCEeEEeccCHHHHHHHHHHhcc-------------
Confidence 35777765542 357899999999999987653 3357899999988888877764320
Q ss_pred HHHHhhhccCCcccceEeeecchhhhh-hhcCCcEeEEEEcCCC---CCCcHHHHHHHHHccCCCCeEEEEEcCCCC---
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKL-CEWGVVGDLIEIDAGH---DFNSAWADINRAWRILRPGGVIFGHDYFTA--- 291 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L-~~l~~~fDLIfIDa~h---~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~--- 291 (327)
+ ..++ .++..- +++.+ |. ..+||+|.+=... +..+..+.|+.+...|+|||+||+-+=...
T Consensus 101 -------~-~~~v--~~~~~~-gLQ~f~P~-~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~ 168 (218)
T PF05891_consen 101 -------D-NPRV--GEFYCV-GLQDFTPE-EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF 168 (218)
T ss_dssp -------G-GCCE--EEEEES--GGG-----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE
T ss_pred -------c-CCCc--ceEEec-CHhhccCC-CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC
Confidence 0 0110 222211 12211 22 3689999987542 335677789999999999999998653321
Q ss_pred ----CCch---hHHHHHHHHHHHcCCeEEE
Q 041517 292 ----ADNR---GVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 292 ----~~~~---GV~~Av~~f~~~~gl~v~~ 314 (327)
.... --.+.+..+++.-|+++..
T Consensus 169 ~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 169 DEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp EEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred cccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 1111 1345666777888988754
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.012 Score=50.86 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=64.5
Q ss_pred hHHHHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 142 SYGAVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 142 ~~g~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.|...|.+.+.... ++-|+|+|-|.|.+-=+|-+. -++.+|+.+|-.-.... +
T Consensus 13 aQR~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~----~p~R~I~vfDR~l~~hp------~--------------- 67 (160)
T PF12692_consen 13 AQRDCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREI----FPDRRIYVFDRALACHP------S--------------- 67 (160)
T ss_dssp HHHHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH------SS-EEEEESS--S-G------G---------------
T ss_pred HHHHHHHHHHHHhcCCCCceEEeccCCCccHHHHHHh----CCCCeEEEEeeecccCC------C---------------
Confidence 45567777776654 689999999999999999885 45999999998543211 0
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhh---cCCcEeEEEEcCCCCCCcHHHHHH-----HHHccCCCCeEEEEEcCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCE---WGVVGDLIEIDAGHDFNSAWADIN-----RAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~~~v~~dl~-----~~~~lL~pGGvIi~dD~~~ 290 (327)
-...+ -.+..|+..++|+. .+.+.-|++.|-+-.+...-.... .+.++|.|||+++-.+-..
T Consensus 68 -~~P~~--------~~~ilGdi~~tl~~~~~~g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 68 -STPPE--------EDLILGDIRETLPALARFGAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp -G---G--------GGEEES-HHHHHHHHHHH-S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred -CCCch--------HheeeccHHHHhHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 00000 23567887777765 468899999996543433112222 3357999999999877554
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.024 Score=44.22 Aligned_cols=105 Identities=19% Similarity=0.127 Sum_probs=63.3
Q ss_pred EEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeee
Q 041517 159 IIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSS 238 (327)
Q Consensus 159 VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~ 238 (327)
++|+|||.|..+ .++.. ......++++|..+.+...++... .. .+.. . +.+..
T Consensus 52 ~ld~~~g~g~~~-~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~------------------~~-~~~~-~---~~~~~ 104 (257)
T COG0500 52 VLDIGCGTGRLA-LLARL---GGRGAYVVGVDLSPEMLALARARA------------------EG-AGLG-L---VDFVV 104 (257)
T ss_pred eEEecCCcCHHH-HHHHh---CCCCceEEEEeCCHHHHHHHHhhh------------------hh-cCCC-c---eEEEE
Confidence 999999999988 44442 111248899999887766422210 00 1100 0 23444
Q ss_pred cchhh-hhhhcC-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 239 GSALT-KLCEWG-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 239 gda~~-~L~~l~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++... .++... ..||++.....+........+..+.+.++|||.+++.+...
T Consensus 105 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 105 ADALGGVLPFEDSASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eccccCCCCCCCCCceeEEeeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44333 123222 37999844443323224678999999999999999888875
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.023 Score=55.95 Aligned_cols=115 Identities=14% Similarity=0.015 Sum_probs=82.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++||-+|-|-|.-+..+.+ .+.-.+|+-+|.++.|.+++++.-- +..+....+.+. .+
T Consensus 289 ~a~~vLvlGGGDGLAlRellk----yP~~~qI~lVdLDP~miela~~~~v--------------lr~~N~~sf~dp--Rv 348 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK----YPQVEQITLVDLDPRMIELASHATV--------------LRALNQGSFSDP--RV 348 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh----CCCcceEEEEecCHHHHHHhhhhhH--------------hhhhccCCccCC--ee
Confidence 468999999999988777776 4558999999999999998875310 111111112221 27
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcH------HHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSA------WADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v------~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.....|+...+..-.+.||+|++|-.-+.++. .+.+..+.++|+++|++++.-..
T Consensus 349 ~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 349 TVVNDDAFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EEEeccHHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 78889998888776789999999954433332 24567778899999999986544
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0048 Score=58.51 Aligned_cols=142 Identities=18% Similarity=0.089 Sum_probs=78.8
Q ss_pred HHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCC-----CCcEEEEEeCCCCChhhhhhhcc--cCccccc-hHH
Q 041517 145 AVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLG-----LDSQILCIDDFRGWPGFRDKFKE--IPMVNGN-VLL 214 (327)
Q Consensus 145 ~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~-----~~~~V~~ID~~~~~~~~A~~~~~--~~~~~g~-~~~ 214 (327)
.++..|+... ++-+|...||.+|-=.-.||.++.... ..-+|++.|++...++.|++-.. ....-+- ...
T Consensus 84 ~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~ 163 (268)
T COG1352 84 EVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPEL 163 (268)
T ss_pred HHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHH
Confidence 3555555433 377999999999965444444444333 36899999999998888865211 0010011 111
Q ss_pred HHHHHHHHhh--hccCCccc-ceEeeecchhhhhhhcCCcEeEEEEcCC---CCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 215 YFQFLQNVIY--QNAIDSVL-PVPFSSGSALTKLCEWGVVGDLIEIDAG---HDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 215 ~~~Fl~nv~~--~g~~~~v~-~V~~~~gda~~~L~~l~~~fDLIfIDa~---h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
..++...... ....+.+. -|.|...+-.+.-+ ..+.||+||+-=- .+.+.-.+-++.+...|+|||++++-.
T Consensus 164 ~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 164 LRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 1122211110 00011111 16666665444211 3467999996421 112334467899999999999998743
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.004 Score=61.12 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=72.0
Q ss_pred HHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 145 AVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 145 ~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
+++....+.++ +..|||+-||.|..++.+|.. ..+|++||..+.+.+.|+++ .
T Consensus 184 ~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~------~~~V~gvE~~~~av~~A~~N-------------------a 238 (352)
T PF05958_consen 184 KLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK------AKKVIGVEIVEEAVEDAREN-------------------A 238 (352)
T ss_dssp HHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC------SSEEEEEES-HHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh------CCeEEEeeCCHHHHHHHHHH-------------------H
Confidence 45555555544 348999999999999999984 57899999999988888774 3
Q ss_pred hhhccCCcccceEeeecchhhhhhhc---------------CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEW---------------GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l---------------~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
...+.. . +.|..+++.+....+ ...+|+|++|-.-..-. ...++.+.+ + ..||---
T Consensus 239 ~~N~i~-n---~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~-~~~~~~~~~-~---~~ivYvS 309 (352)
T PF05958_consen 239 KLNGID-N---VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD-EKVIELIKK-L---KRIVYVS 309 (352)
T ss_dssp HHTT---S---EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC-HHHHHHHHH-S---SEEEEEE
T ss_pred HHcCCC-c---ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch-HHHHHHHhc-C---CeEEEEE
Confidence 333321 1 667666554432111 13689999994322211 022333322 3 3677666
Q ss_pred CCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 288 YFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 288 ~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+.. .-..+-+..+.+ |+++.
T Consensus 310 CnP----~tlaRDl~~L~~--~y~~~ 329 (352)
T PF05958_consen 310 CNP----ATLARDLKILKE--GYKLE 329 (352)
T ss_dssp S-H----HHHHHHHHHHHC--CEEEE
T ss_pred CCH----HHHHHHHHHHhh--cCEEE
Confidence 654 234455555543 55543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.024 Score=57.25 Aligned_cols=100 Identities=13% Similarity=0.136 Sum_probs=72.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+++|+=||.|.+++.+|.. ..+|+++|+++++.+.|++ |+...+.. .+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A~~-------------------NA~~n~i~----N~ 343 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAAQE-------------------NAAANGID----NV 343 (432)
T ss_pred CCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHHHH-------------------HHHHcCCC----cE
Confidence 4568999999999999999963 7899999999999998877 44433432 28
Q ss_pred EeeecchhhhhhhcC--CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 235 PFSSGSALTKLCEWG--VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 235 ~~~~gda~~~L~~l~--~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.|..+++.+.++.+. ..+|.|++|---..-+ .++-..+..++|-.++-+
T Consensus 344 ~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~~~~p~~IvYV 394 (432)
T COG2265 344 EFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLAKLKPKRIVYV 394 (432)
T ss_pred EEEeCCHHHHhhhccccCCCCEEEECCCCCCCC--HHHHHHHHhcCCCcEEEE
Confidence 888999999877763 6889999994332222 344444444666665544
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=54.29 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCCC--EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 144 GAVFGNLIDKVRPR--VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 144 g~lL~~L~~~~~p~--~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
++.|...+...+.. +|||+=+|.|.-++.+|.. +++|+.||-++....+.++.
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dg------------------- 129 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDG------------------- 129 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHH-------------------
Confidence 44555555443444 7999999999999999974 78899999998766554442
Q ss_pred Hhhh----ccCCcc-cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc----HHHHHHHHHc
Q 041517 222 VIYQ----NAIDSV-LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS----AWADINRAWR 275 (327)
Q Consensus 222 v~~~----g~~~~v-~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~----v~~dl~~~~~ 275 (327)
+... .....+ ..+.+..+++.+.|......||+||+|-..+... +...++.+..
T Consensus 130 L~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~ 192 (250)
T PRK10742 130 LARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQS 192 (250)
T ss_pred HHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHH
Confidence 2111 000000 1288889999999887767899999997654322 3444554444
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0047 Score=51.69 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=34.9
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
+|+||||+.|..++++++. +++.++++||+++.+.+..+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~----~~~~~v~~~E~~~~~~~~l~~~ 41 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK----GAEGRVIAFEPLPDAYEILEEN 41 (143)
T ss_pred CEEEccCCccHHHHHHHHh----CCCCEEEEEecCHHHHHHHHHH
Confidence 4899999999999999884 5567999999999988766654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.008 Score=52.16 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=56.1
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+.... ..++++++|||+|...+..+ ++....|+++|++++..+...++.
T Consensus 35 sM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~s-----m~~~e~vlGfDIdpeALEIf~rNa------------------ 91 (185)
T KOG3420|consen 35 SMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFS-----MPKNESVLGFDIDPEALEIFTRNA------------------ 91 (185)
T ss_pred HHHHHHHhhhccccCcchhhhcCchhhhHHHhh-----cCCCceEEeeecCHHHHHHHhhch------------------
Confidence 4555555443 47899999999999884433 456889999999999888776643
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA 259 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa 259 (327)
...... +++.+.+-.+. ...++.||-+.+|-
T Consensus 92 -eEfEvq-----idlLqcdildl-e~~~g~fDtaviNp 122 (185)
T KOG3420|consen 92 -EEFEVQ-----IDLLQCDILDL-ELKGGIFDTAVINP 122 (185)
T ss_pred -HHhhhh-----hheeeeeccch-hccCCeEeeEEecC
Confidence 222211 33444443332 22247899999984
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.073 Score=52.22 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=66.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..++|||||..|..|..+++. +.+|++||..+-... +... .+ |
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~~~------------------------L~~~---~~---V 254 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMAQS------------------------LMDT---GQ---V 254 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcCHh------------------------hhCC---CC---E
Confidence 4679999999999999999984 679999996442111 1111 12 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC---eEEEEEcCCCCCCchhHHHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPG---GVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG---GvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
....+++....+. ..++|+++.|..-... .-.+.+.+.|..| -.|+---.....++..|++..+.+
T Consensus 255 ~h~~~d~fr~~p~-~~~vDwvVcDmve~P~---rva~lm~~Wl~~g~cr~aIfnLKlpmk~r~~~v~~~l~~i 323 (357)
T PRK11760 255 EHLRADGFKFRPP-RKNVDWLVCDMVEKPA---RVAELMAQWLVNGWCREAIFNLKLPMKKRYEEVRQCLELI 323 (357)
T ss_pred EEEeccCcccCCC-CCCCCEEEEecccCHH---HHHHHHHHHHhcCcccEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 6666665554443 4689999999875333 3334444444444 233322222234556677765544
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.018 Score=54.91 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhcc---CCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQ---LGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~---l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..++......+|+|-.||+|.+.+.+.+.++. ......++|+|+++....+++- |
T Consensus 36 ~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~-------------------n 96 (311)
T PF02384_consen 36 DLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKL-------------------N 96 (311)
T ss_dssp HHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHH-------------------H
T ss_pred HHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHh-------------------h
Confidence 46666665555668999999999998887774311 1247899999999887766643 2
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCC---C-------------------CCCcHHHHHHHHHccCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAG---H-------------------DFNSAWADINRAWRILR 278 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~---h-------------------~~~~v~~dl~~~~~lL~ 278 (327)
+...+..... ..+..+++...-... ...||+|+..-- . ....-+..++.++..|+
T Consensus 97 l~l~~~~~~~--~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk 174 (311)
T PF02384_consen 97 LLLHGIDNSN--INIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK 174 (311)
T ss_dssp HHHTTHHCBG--CEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE
T ss_pred hhhhcccccc--ccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc
Confidence 2222211110 235556655432221 368999986411 1 01122356788999999
Q ss_pred CCeEE
Q 041517 279 PGGVI 283 (327)
Q Consensus 279 pGGvI 283 (327)
+||.+
T Consensus 175 ~~G~~ 179 (311)
T PF02384_consen 175 PGGRA 179 (311)
T ss_dssp EEEEE
T ss_pred cccce
Confidence 99953
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.056 Score=49.31 Aligned_cols=103 Identities=22% Similarity=0.301 Sum_probs=68.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|+|+|+.-|.=+-.+++. ++++++|++||+.+--+- . ++.. +.-.
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~---~~~~~~ivavDi~p~~~~-~---------------------~V~~-------iq~d 93 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKK---LGAGGKIVAVDILPMKPI-P---------------------GVIF-------LQGD 93 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHH---hCCCCcEEEEECcccccC-C---------------------CceE-------Eeee
Confidence 579999999999999888885 677888999999774321 0 1100 0122
Q ss_pred eeecchhhhhh-hcC-CcEeEEEEcCCCCC------------CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLC-EWG-VVGDLIEIDAGHDF------------NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~-~l~-~~fDLIfIDa~h~~------------~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...+..+.|. .++ .++|+|..|+...- +-....++.+...|+|||..++-++.-
T Consensus 94 ~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 94 ITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred ccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 22333444332 233 45799999976411 113445778899999999999988775
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.051 Score=58.13 Aligned_cols=81 Identities=10% Similarity=-0.039 Sum_probs=59.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC--------------------------------------CcEEEEEeCCCCChh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL--------------------------------------DSQILCIDDFRGWPG 197 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~--------------------------------------~~~V~~ID~~~~~~~ 197 (327)
...++|-+||+|...+..|.+..+.+| ..+++++|+++.+.+
T Consensus 191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~ 270 (702)
T PRK11783 191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ 270 (702)
T ss_pred CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence 568999999999999888775433332 236889999888888
Q ss_pred hhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEc
Q 041517 198 FRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEID 258 (327)
Q Consensus 198 ~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfID 258 (327)
.|++ |+...|+.+. |.+..+|..+.-... .+.||+|+.+
T Consensus 271 ~A~~-------------------N~~~~g~~~~---i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 271 AARK-------------------NARRAGVAEL---ITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred HHHH-------------------HHHHcCCCcc---eEEEeCChhhcccccccCCCCEEEEC
Confidence 7766 6777777665 788888877642222 2469999988
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.062 Score=50.72 Aligned_cols=94 Identities=12% Similarity=0.083 Sum_probs=63.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..++||||.|-|.-|..|+.. =.+|++-|.+..|... +...|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~------f~~v~aTE~S~~Mr~r-----------------------L~~kg~------- 137 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL------FKEVYATEASPPMRWR-----------------------LSKKGF------- 137 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh------cceEEeecCCHHHHHH-----------------------HHhCCC-------
Confidence 4578999999999999999986 3569999998877532 222222
Q ss_pred EeeecchhhhhhhcCCcEeEEEE----cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI----DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI----Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+... ..+ ...-+.+||+|-. |=. ..+..-|+.+.+.|+|+|++|+.=+..
T Consensus 138 ~vl~--~~~-w~~~~~~fDvIscLNvLDRc---~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 138 TVLD--IDD-WQQTDFKFDVISCLNVLDRC---DRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred eEEe--hhh-hhccCCceEEEeehhhhhcc---CCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 1111 111 1222468999973 422 335678899999999999988765543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.063 Score=50.89 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=42.0
Q ss_pred HHHHHHHHhh---cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 144 GAVFGNLIDK---VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 144 g~lL~~L~~~---~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
..+|..|.+. .+|.+|||+|+|.|..++.+... .+.-.+++++|.++.|.++++..
T Consensus 19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~---~~~~~~~~~vd~s~~~~~l~~~l 77 (274)
T PF09243_consen 19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREV---WPSLKEYTCVDRSPEMLELAKRL 77 (274)
T ss_pred HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHH---hcCceeeeeecCCHHHHHHHHHH
Confidence 3466666543 36899999999999876666654 33467899999999998877653
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.042 Score=56.03 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=77.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+-++|+|...+.|.+|..|... . |...-+-+... .+ ++.-+-..|+
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~------~--VWVMNVVP~~~----~n---------------tL~vIydRGL------ 410 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD------P--VWVMNVVPVSG----PN---------------TLPVIYDRGL------ 410 (506)
T ss_pred cceeeeeeecccccHHHHHhccC------C--ceEEEecccCC----CC---------------cchhhhhccc------
Confidence 34579999999999999888652 2 44333322210 00 0112222333
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCC----CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDF----NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~----~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
|-..+ |=-+.++.++.+|||||.|+-.+. -.+..-+-++-|+|||||.+|+.|-. .+-.-++.++...+
T Consensus 411 IG~yh-DWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~------~vl~~v~~i~~~lr 483 (506)
T PF03141_consen 411 IGVYH-DWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV------DVLEKVKKIAKSLR 483 (506)
T ss_pred chhcc-chhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH------HHHHHHHHHHHhCc
Confidence 22211 223446677899999999865432 33445577889999999999997764 47888888999888
Q ss_pred CeEEE
Q 041517 310 LKVQI 314 (327)
Q Consensus 310 l~v~~ 314 (327)
++++.
T Consensus 484 W~~~~ 488 (506)
T PF03141_consen 484 WEVRI 488 (506)
T ss_pred ceEEE
Confidence 88764
|
; GO: 0008168 methyltransferase activity |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.12 Score=48.23 Aligned_cols=126 Identities=19% Similarity=0.188 Sum_probs=74.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+.++|||||+.+|.+|-++.+. + -.+||+||.--+-.... +. .+.+++.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~----g-Ak~VyavDVG~~Ql~~k----------------------LR---~d~rV~~ 127 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR----G-AKHVYAVDVGYGQLHWK----------------------LR---NDPRVIV 127 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc----C-CcEEEEEEccCCccCHh----------------------Hh---cCCcEEE
Confidence 35789999999999999999883 3 57899999966533211 00 0112111
Q ss_pred eEeeecchhhhh-hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE-cC--------------CCCCCc-hh
Q 041517 234 VPFSSGSALTKL-CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH-DY--------------FTAADN-RG 296 (327)
Q Consensus 234 V~~~~gda~~~L-~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d-D~--------------~~~~~~-~G 296 (327)
++ .-++...- ....+..|++++|... -+....|-.+..++++|+-++.= -- ..++.. .-
T Consensus 128 ~E--~tN~r~l~~~~~~~~~d~~v~DvSF--ISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~ 203 (245)
T COG1189 128 LE--RTNVRYLTPEDFTEKPDLIVIDVSF--ISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAE 203 (245)
T ss_pred Ee--cCChhhCCHHHcccCCCeEEEEeeh--hhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHH
Confidence 11 11111110 1234578999999875 45557788888899998855531 00 001111 12
Q ss_pred HHHHHHHHHHHcCCeEE
Q 041517 297 VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 V~~Av~~f~~~~gl~v~ 313 (327)
|..-+..|+.+.|+++.
T Consensus 204 v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 204 VLSKIENFAKELGFQVK 220 (245)
T ss_pred HHHHHHHHHhhcCcEEe
Confidence 55666777888887754
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.16 Score=50.99 Aligned_cols=135 Identities=16% Similarity=0.087 Sum_probs=86.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||..+.-|.=|.+||..|+ ..|.|++-|.+..-...- .+|+...|..+.+
T Consensus 242 gERIlDmcAAPGGKTt~IAalMk---n~G~I~AnD~n~~r~~~l-------------------~~n~~rlGv~nti---- 295 (460)
T KOG1122|consen 242 GERILDMCAAPGGKTTHIAALMK---NTGVIFANDSNENRLKSL-------------------KANLHRLGVTNTI---- 295 (460)
T ss_pred CCeecchhcCCCchHHHHHHHHc---CCceEEecccchHHHHHH-------------------HHHHHHhCCCceE----
Confidence 46999999999999999999854 589999999987644322 2366666655442
Q ss_pred eeecchhhhh-hhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 236 FSSGSALTKL-CEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 236 ~~~gda~~~L-~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
....|..+.- ...++.||=|.+||--+... -.+-|..+..++++||+|+-..+--.
T Consensus 296 v~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 296 VSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred EEccCcccccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 2233333210 12335899999997543200 12346778899999999999888753
Q ss_pred CCchhHHHHHHHH-HHHc-CCeEEEccceE
Q 041517 292 ADNRGVRRAVNLF-AKIN-GLKVQIDGQHW 319 (327)
Q Consensus 292 ~~~~GV~~Av~~f-~~~~-gl~v~~~gq~w 319 (327)
+.-.++|-++ ..+. .+++.+.|..|
T Consensus 376 ---~~ENE~vV~yaL~K~p~~kL~p~~~~i 402 (460)
T KOG1122|consen 376 ---VEENEAVVDYALKKRPEVKLVPTGLDI 402 (460)
T ss_pred ---hhhhHHHHHHHHHhCCceEeccccccC
Confidence 2223444433 3333 56666665544
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.066 Score=50.90 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=35.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+..|||||-|+|..|..|.++ +.+|+++|.++.|...-++
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~k 98 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEK 98 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHH
Confidence 4689999999999999999996 8999999999998764443
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.062 Score=53.39 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=75.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC-cccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID-SVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~-~v~~ 233 (327)
++-+|||.=+++|.=++-++.- ++...+|++-|+++...+..++ |+...+..+ +
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E---~~~~~~v~~NDi~~~a~~~i~~-------------------N~~~N~~~~~~--- 103 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKE---LAGVDKVTANDISPEAVELIKR-------------------NLELNGLEDER--- 103 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH----SSECEEEEEES-HHHHHHHHH-------------------HHHHCT-SGCC---
T ss_pred CCceEEeccccccHHHHHHHHH---cCCCCEEEEecCCHHHHHHHHH-------------------hHhhccccCce---
Confidence 3558999999999999998884 4556799999999987776655 665555554 4
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
++....|+-..|......||+|=||. |-.+...++.+++-++.||+|++.--.
T Consensus 104 ~~v~~~DAn~ll~~~~~~fD~IDlDP---fGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 104 IEVSNMDANVLLYSRQERFDVIDLDP---FGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEEES-HHHHHCHSTT-EEEEEE-----SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EEEehhhHHHHhhhccccCCEEEeCC---CCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 78888898887755568999999985 344557999999999999999986544
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.038 Score=50.00 Aligned_cols=112 Identities=15% Similarity=0.168 Sum_probs=73.1
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++...+....-+.+.++|+|+|-.+...|.+ -.+|++|+.++.-...++++ +...
T Consensus 23 vF~~ai~~va~d~~~DLGaGsGiLs~~Aa~~------A~rViAiE~dPk~a~~a~eN-------------------~~v~ 77 (252)
T COG4076 23 VFTSAIAEVAEDTFADLGAGSGILSVVAAHA------AERVIAIEKDPKRARLAEEN-------------------LHVP 77 (252)
T ss_pred HHHHHHHHHhhhceeeccCCcchHHHHHHhh------hceEEEEecCcHHHHHhhhc-------------------CCCC
Confidence 3344444445589999999999999998886 57899999999887777763 3222
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEE---EcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIE---IDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIf---IDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
|.. .++...||+.+. .. +..|.|. +|...-.+....-++.++..||..+.||=..+.
T Consensus 78 g~~----n~evv~gDA~~y--~f-e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 78 GDV----NWEVVVGDARDY--DF-ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred CCc----ceEEEecccccc--cc-cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence 321 167778887763 11 3456665 343332333334567777788888877654443
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.66 Score=42.85 Aligned_cols=122 Identities=13% Similarity=0.019 Sum_probs=87.4
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.++.||||--||..+.+.+ .++...+++.|+.++-.+.|.+ |+...++.++ ++.
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~----~~~~~~~va~eV~~gpl~~a~~-------------------~v~~~~l~~~---i~v 71 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVK----NNPASTAVAGEVVPGPLESAIR-------------------NVKKNNLSER---IDV 71 (226)
T ss_pred CceeeccCchhHhHHHHHh----cCCcceEEEeecccCHHHHHHH-------------------HHHhcCCcce---EEE
Confidence 4499999999999999988 3568899999999998876655 5555666666 777
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+.+|.+..|. .+..+|.|.|-|.- ..-...-+++-...|+.=-.+|+.--.. ..-++++...+++++.
T Consensus 72 r~~dgl~~l~-~~d~~d~ivIAGMG-G~lI~~ILee~~~~l~~~~rlILQPn~~-------~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 72 RLGDGLAVLE-LEDEIDVIVIAGMG-GTLIREILEEGKEKLKGVERLILQPNIH-------TYELREWLSANSYEIK 139 (226)
T ss_pred eccCCccccC-ccCCcCEEEEeCCc-HHHHHHHHHHhhhhhcCcceEEECCCCC-------HHHHHHHHHhCCceee
Confidence 7787766542 24579999998754 2335566777777776544555533322 3567788888888765
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.085 Score=44.33 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=49.6
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCC--CCcH--HHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHD--FNSA--WADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--~~~v--~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
.+.+..||+.+.|+.+...||.||.|+--+ ++++ .+.++.+.++++|||+++.--. ...|+.-....
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys~---------a~~Vr~~L~~a 102 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATYSS---------AGAVRRALQQA 102 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES-----------BHHHHHHHHHC
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEeec---------hHHHHHHHHHc
Confidence 377888999999999989999999998532 2332 4578999999999999987222 34455555667
Q ss_pred CCeEE
Q 041517 309 GLKVQ 313 (327)
Q Consensus 309 gl~v~ 313 (327)
|++|.
T Consensus 103 GF~v~ 107 (124)
T PF05430_consen 103 GFEVE 107 (124)
T ss_dssp TEEEE
T ss_pred CCEEE
Confidence 88776
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.07 Score=50.70 Aligned_cols=147 Identities=15% Similarity=0.077 Sum_probs=81.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhc-ccCccccchH---HHHHHHHHHhhhc-----
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFK-EIPMVNGNVL---LYFQFLQNVIYQN----- 226 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~-~~~~~~g~~~---~~~~Fl~nv~~~g----- 226 (327)
..+||-=|||.|..+.-+|.. +-.+.+.|.+--|.- +-.+. +......... +.+.|........
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll-~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v 129 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLL-ASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPV 129 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHH-HHHHHHcccCCCCcEEEecceecccCCCCHHHhCCce
Confidence 368999999999999999984 678999999887753 32221 1000000000 0001111110000
Q ss_pred -cCC--------cccceEeeecchhhhhhhc--CCcEeEE----EEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC-
Q 041517 227 -AID--------SVLPVPFSSGSALTKLCEW--GVVGDLI----EIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT- 290 (327)
Q Consensus 227 -~~~--------~v~~V~~~~gda~~~L~~l--~~~fDLI----fIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~- 290 (327)
..| .--.+.+..||..+....- .+.||.| |||..+ .+.++++.+..+|||||+.| +...
T Consensus 130 ~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~---Ni~~Yi~tI~~lLkpgG~WI--N~GPL 204 (270)
T PF07942_consen 130 RIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAE---NIIEYIETIEHLLKPGGYWI--NFGPL 204 (270)
T ss_pred EeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechH---HHHHHHHHHHHHhccCCEEE--ecCCc
Confidence 000 0001445556655543322 2578877 589864 47899999999999999554 3332
Q ss_pred ----CCC-------chhHHHHHHHHHHHcCCeEEE
Q 041517 291 ----AAD-------NRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 291 ----~~~-------~~GV~~Av~~f~~~~gl~v~~ 314 (327)
.+. ..=..+-+..++...|+++..
T Consensus 205 lyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 205 LYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred cccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 111 000234445556677888763
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.13 Score=49.41 Aligned_cols=117 Identities=13% Similarity=0.065 Sum_probs=82.5
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
.+...|++|+-||=|-|.-....++. ..=+.+.-+|++...++..+++. ..+.- |.++.
T Consensus 117 ~s~~npkkvlVVgggDggvlrevikH----~~ve~i~~~eiD~~Vie~sk~y~----------------p~la~-gy~~~ 175 (337)
T KOG1562|consen 117 CSHPNPKKVLVVGGGDGGVLREVIKH----KSVENILLCEIDENVIESSKQYL----------------PTLAC-GYEGK 175 (337)
T ss_pred ccCCCCCeEEEEecCCccceeeeecc----ccccceeeehhhHHHHHHHHHHh----------------HHHhc-ccCCC
Confidence 45667999999999888876666552 34567888888877776665543 23321 22222
Q ss_pred ccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEE-EcCCC
Q 041517 231 VLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFG-HDYFT 290 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~-dD~~~ 290 (327)
.|.+.-||+...+... .++||+|..|.+-..-+ ...+++.+.+.||+||+++. -|..|
T Consensus 176 --~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 176 --KVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred --ceEEEeccHHHHHHHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 2888889998888776 58999999998754433 23567888999999998774 45555
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.11 Score=50.80 Aligned_cols=94 Identities=22% Similarity=0.256 Sum_probs=61.5
Q ss_pred CCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.++|+=+|.| .|-.++.+|++ + +.+|+++|.+++-.+.|++... +.+ +
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka---~--ga~Via~~~~~~K~e~a~~lGA------------------------d~~--i 215 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKA---M--GAEVIAITRSEEKLELAKKLGA------------------------DHV--I 215 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHH---c--CCeEEEEeCChHHHHHHHHhCC------------------------cEE--E
Confidence 4567777665 45567777775 4 4999999999987777766421 000 2
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.....+..+ ...+.||+|+.=.. ..+++.+++.|++||.+++--..
T Consensus 216 ~~~~~~~~~---~~~~~~d~ii~tv~------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 216 NSSDSDALE---AVKEIADAIIDTVG------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EcCCchhhH---HhHhhCcEEEECCC------hhhHHHHHHHHhcCCEEEEECCC
Confidence 222122222 22234899877544 26889999999999988876665
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.089 Score=53.83 Aligned_cols=87 Identities=14% Similarity=0.071 Sum_probs=62.3
Q ss_pred HHHHHHHHhhc----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 144 GAVFGNLIDKV----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 144 g~lL~~L~~~~----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.++|...++.. ..+.++|+.||+|.+++.+|+. -.+|++|+++++..+-|+++..
T Consensus 368 aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~------~~~ViGvEi~~~aV~dA~~nA~--------------- 426 (534)
T KOG2187|consen 368 AEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG------VKRVIGVEISPDAVEDAEKNAQ--------------- 426 (534)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc------ccceeeeecChhhcchhhhcch---------------
Confidence 45555555533 2467999999999999999984 6789999999999988887542
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCC----cEe-EEEEcC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGV----VGD-LIEIDA 259 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~----~fD-LIfIDa 259 (327)
..|.+ ..+|+.|.+++.++.+.. .-+ +++||-
T Consensus 427 ----~Ngis----Na~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDP 463 (534)
T KOG2187|consen 427 ----INGIS----NATFIVGQAEDLFPSLLTPCCDSETLVAIIDP 463 (534)
T ss_pred ----hcCcc----ceeeeecchhhccchhcccCCCCCceEEEECC
Confidence 22222 178888888887776532 234 667773
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.16 Score=43.23 Aligned_cols=43 Identities=26% Similarity=0.176 Sum_probs=35.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+.++|++||.+.|.|+++++.. + -.+|++++..+...+..++
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~----G-AK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR----G-ASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc----C-ccEEEEeccCHHHHHHHHH
Confidence 46899999999999999999873 3 5789999998876655444
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.79 Score=43.54 Aligned_cols=137 Identities=13% Similarity=0.118 Sum_probs=69.9
Q ss_pred HHHHhhcCCCEEEEEcCcchH--HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 148 GNLIDKVRPRVIIEVGSFLGA--SALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~--Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+.|++..+-+..||||||.-. +.=.+|+. ..|+.+|+-+|.++-...+++.... .
T Consensus 61 r~la~~~GIrQFLDlGsGlPT~~nvHevAq~---~~P~aRVVYVD~DPvv~ah~ralL~----------------~---- 117 (267)
T PF04672_consen 61 RYLAEEAGIRQFLDLGSGLPTAGNVHEVAQR---VAPDARVVYVDNDPVVLAHARALLA----------------D---- 117 (267)
T ss_dssp HHHHCTT---EEEEET--S--SS-HHHHHHH---H-TT-EEEEEESSHHHHHCCHHHHT----------------T----
T ss_pred HHHHHhcCcceEEEcccCCCCCCCHhHHHHh---hCCCceEEEECCCchHHHHHHhhhc----------------C----
Confidence 444444466799999998542 34456664 5789999999999976666554321 0
Q ss_pred ccCCcccceEeeecchhh---hh--------hhcCCcEeEEEEcCCC---CCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 226 NAIDSVLPVPFSSGSALT---KL--------CEWGVVGDLIEIDAGH---DFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~---~L--------~~l~~~fDLIfIDa~h---~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
+-.++ ..+..+|..+ .| -.+++++-++++..-| +.+.....+..+...|.||+++++.....+
T Consensus 118 ~~~g~---t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 118 NPRGR---TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp -TTSE---EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCcc---EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 00001 2233332221 12 1235788888887554 224567889999999999999998877663
Q ss_pred CCchhHHHHHHHHHHHcCCe
Q 041517 292 ADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 292 ~~~~GV~~Av~~f~~~~gl~ 311 (327)
. .+...+.+..+.+..+..
T Consensus 195 ~-~p~~~~~~~~~~~~~~~~ 213 (267)
T PF04672_consen 195 G-APERAEALEAVYAQAGSP 213 (267)
T ss_dssp T-SHHHHHHHHHHHHHCCS-
T ss_pred C-CHHHHHHHHHHHHcCCCC
Confidence 2 333334444444444433
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.33 Score=50.03 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=35.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCC----CCcEEEEEeCCCCChhhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLG----LDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~----~~~~V~~ID~~~~~~~~A~~ 201 (327)
..+|+|.|||+|.+.+.+++.+.... ....++++|+++.....++.
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 46899999999999999988754221 13678999999987776655
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.15 Score=47.87 Aligned_cols=100 Identities=11% Similarity=0.097 Sum_probs=60.0
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
+...+++.. +...|||||.|.|..|..|+.. ..++++||.++.+.+.-++..
T Consensus 18 ~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~------~~~v~~vE~d~~~~~~L~~~~------------------- 72 (262)
T PF00398_consen 18 IADKIVDALDLSEGDTVLEIGPGPGALTRELLKR------GKRVIAVEIDPDLAKHLKERF------------------- 72 (262)
T ss_dssp HHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH------SSEEEEEESSHHHHHHHHHHC-------------------
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc------cCcceeecCcHhHHHHHHHHh-------------------
Confidence 444444433 4689999999999999999986 489999999876655433311
Q ss_pred hhhccCCcccceEeeecchhhhhhhcC---CcEeEEEEcCCCCCCcHHHHHHHHHccCCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWG---VVGDLIEIDAGHDFNSAWADINRAWRILRP 279 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~---~~fDLIfIDa~h~~~~v~~dl~~~~~lL~p 279 (327)
. ...+ +.+..+|+.+. .... ....+|+- +.+|+-....+..++..-+.
T Consensus 73 ~---~~~~---~~vi~~D~l~~-~~~~~~~~~~~~vv~--NlPy~is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 73 A---SNPN---VEVINGDFLKW-DLYDLLKNQPLLVVG--NLPYNISSPILRKLLELYRF 123 (262)
T ss_dssp T---TCSS---EEEEES-TTTS-CGGGHCSSSEEEEEE--EETGTGHHHHHHHHHHHGGG
T ss_pred h---hccc---ceeeecchhcc-ccHHhhcCCceEEEE--EecccchHHHHHHHhhcccc
Confidence 1 1122 77778887762 1111 12223332 44555555566666663333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.089 Score=52.05 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=69.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.+..++++||+.|.....++.- ....++++|.++.-...+.+.. +.+.+.. + -
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f-----~~~~~~Gl~~n~~e~~~~~~~~--------------~~~~l~~-----k---~ 162 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVF-----KKAGVVGLDNNAYEAFRANELA--------------KKAYLDN-----K---C 162 (364)
T ss_pred ccccccccCcCcCchhHHHHHh-----ccCCccCCCcCHHHHHHHHHHH--------------HHHHhhh-----h---c
Confidence 3457999999999999999973 2677888888765333222210 0111111 1 1
Q ss_pred EeeecchhhhhhhcCCcEeEEE-EcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIE-IDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIf-IDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +.-+..||.+. +|+.---+.....+++.++.++|||+.+.-++..
T Consensus 163 ~~~~~~~~~~-~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 163 NFVVADFGKM-PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred ceehhhhhcC-CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence 1122222221 22246788885 7876545667788999999999999999987765
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.68 Score=42.42 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+||=+|..+|-+..+++.- .+ .|.+||||.++.... +. + ++.. ...++.|+
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDI---v~-~G~iYaVEfs~R~~r---eL----------------l-~~a~--~R~Ni~PI 129 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDI---VG-EGRIYAVEFSPRPMR---EL----------------L-DVAE--KRPNIIPI 129 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhc---cC-CCcEEEEEecchhHH---HH----------------H-HHHH--hCCCceee
Confidence 3579999999999999999985 44 899999999875321 10 1 1111 11223232
Q ss_pred Eeeecchh--hhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEE
Q 041517 235 PFSSGSAL--TKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVI 283 (327)
Q Consensus 235 ~~~~gda~--~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvI 283 (327)
-+||. +....+-+..|+||.|-..+.+. .-...++.-.|++||.+
T Consensus 130 ---L~DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa-~I~~~Na~~FLk~~G~~ 176 (231)
T COG1889 130 ---LEDARKPEKYRHLVEKVDVIYQDVAQPNQA-EILADNAEFFLKKGGYV 176 (231)
T ss_pred ---ecccCCcHHhhhhcccccEEEEecCCchHH-HHHHHHHHHhcccCCeE
Confidence 23332 22333447899999998875543 33457778899999833
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.097 Score=49.38 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=75.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHH--HHHHHHHhhhc------
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLY--FQFLQNVIYQN------ 226 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~--~~Fl~nv~~~g------ 226 (327)
+..++||||||. +-..+..+ ..--.+|++.|..+.-.+.-+++.+.+ |..... -++..+++-..
T Consensus 56 ~g~~llDiGsGP--tiy~~lsa---~~~f~~I~l~dy~~~N~~el~kWl~~~---~a~DWs~~~~~v~~lEg~~~~~~e~ 127 (256)
T PF01234_consen 56 KGETLLDIGSGP--TIYQLLSA---CEWFEEIVLSDYSEQNREELEKWLRKE---GAFDWSPFWKYVCELEGKREKWEEK 127 (256)
T ss_dssp -EEEEEEES-TT----GGGTTG---GGTEEEEEEEESSHHHHHHHHHHHTT----TS--THHHHHHHHHHTTSSSGHHHH
T ss_pred CCCEEEEeCCCc--HHHhhhhH---HHhhcceEEeeccHhhHHHHHHHHCCC---CCCCccHHHHHHHhccCCcchhhhH
Confidence 356899999965 22222222 223567999999876544333332211 221111 12222222100
Q ss_pred ---cCC---cccceEeeecchhhhhhhcCCcEeEEEEc-----CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC---
Q 041517 227 ---AID---SVLPVPFSSGSALTKLCEWGVVGDLIEID-----AGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA--- 292 (327)
Q Consensus 227 ---~~~---~v~~V~~~~gda~~~L~~l~~~fDLIfID-----a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~--- 292 (327)
+.. .|++....+.........+..+||.|..= +..+.+.....++.+..+|||||.+|+-.+....
T Consensus 128 e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~ 207 (256)
T PF01234_consen 128 EEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM 207 (256)
T ss_dssp HHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE
T ss_pred HHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE
Confidence 000 12222222222222100123459998743 2344456678899999999999999998887622
Q ss_pred ----Cchh---HHHHHHHHHHHcCCeEEEcc
Q 041517 293 ----DNRG---VRRAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 293 ----~~~G---V~~Av~~f~~~~gl~v~~~g 316 (327)
.++- -++.|.+-..+.|++|....
T Consensus 208 vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 208 VGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 1222 34566666677888876443
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.4 Score=41.27 Aligned_cols=132 Identities=16% Similarity=0.066 Sum_probs=68.9
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..++||=||=. =..++++|.. +...+|+.+|+++-..+.-++.. ...|+ +
T Consensus 43 L~gk~il~lGDD-DLtSlA~al~----~~~~~I~VvDiDeRll~fI~~~a-------------------~~~gl-----~ 93 (243)
T PF01861_consen 43 LEGKRILFLGDD-DLTSLALALT----GLPKRITVVDIDERLLDFINRVA-------------------EEEGL-----P 93 (243)
T ss_dssp STT-EEEEES-T-T-HHHHHHHH----T--SEEEEE-S-HHHHHHHHHHH-------------------HHHT-------
T ss_pred ccCCEEEEEcCC-cHHHHHHHhh----CCCCeEEEEEcCHHHHHHHHHHH-------------------HHcCC-----c
Confidence 357899999953 3334555542 44789999999887666443321 11232 3
Q ss_pred eEeeecchhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 234 VPFSSGSALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 234 V~~~~gda~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
|+....|..+.||. +-+.||++|.|---.-+.+.-.+......|+.-|..++--+...+.-+.....++.+..+.|+-|
T Consensus 94 i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i 173 (243)
T PF01861_consen 94 IEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVI 173 (243)
T ss_dssp EEEE---TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EE
T ss_pred eEEEEecccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCH
Confidence 77777887787765 56899999999766556666677788888887553333333332212344456777777888876
Q ss_pred EE
Q 041517 313 QI 314 (327)
Q Consensus 313 ~~ 314 (327)
.-
T Consensus 174 ~d 175 (243)
T PF01861_consen 174 TD 175 (243)
T ss_dssp EE
T ss_pred HH
Confidence 54
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.082 Score=53.86 Aligned_cols=115 Identities=20% Similarity=0.126 Sum_probs=81.7
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
....+.+..++-+|||.=+.+|.=++-.|.- ++.-+++++-|.++...+.-++ |+...
T Consensus 100 t~~~~~~~~~~l~vLealsAtGlrslRya~E---l~~v~~v~AnD~~~~aV~~i~~-------------------Nv~~N 157 (525)
T KOG1253|consen 100 TAALLKREEKSLRVLEALSATGLRSLRYAKE---LPGVRQVVANDLNENAVTSIQR-------------------NVELN 157 (525)
T ss_pred ccchhhhccCcchHHHHhhhhhHHHHHHHHH---hcchhhhcccCCCHHHHHHHHh-------------------hhhhc
Confidence 3455556677889999999999999998884 5667889999998877664444 44443
Q ss_pred ccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+..+. |+-..+|+-..+-.. ...||+|.+|- |-..-.+|+.+.+-++.||++++.--
T Consensus 158 ~v~~i---ve~~~~DA~~lM~~~~~~~~~FDvIDLDP---yGs~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 158 GVEDI---VEPHHSDANVLMYEHPMVAKFFDVIDLDP---YGSPSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred Cchhh---cccccchHHHHHHhccccccccceEecCC---CCCccHHHHHHHHHhhcCCEEEEEec
Confidence 33333 444556665544333 37899999985 33344799999999999999987543
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.18 Score=45.80 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=28.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
.+.++|||+|+|.|.-++.-|++ + -..|++.|..+-
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~a----G-A~~v~a~d~~P~ 113 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARA----G-AAEVVAADIDPW 113 (218)
T ss_pred cccceeeecccccChHHHHHHHh----h-hHHHHhcCCChH
Confidence 45799999999999999988875 2 456778887743
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.64 Score=42.88 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=45.8
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCC-----CC-------CC---c-HHHHHHHHHccCCCCeEEEE-EcCCCCCCch
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAG-----HD-------FN---S-AWADINRAWRILRPGGVIFG-HDYFTAADNR 295 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~-----h~-------~~---~-v~~dl~~~~~lL~pGGvIi~-dD~~~~~~~~ 295 (327)
.++..||+.+.|+.+ ++++|||+.|-- .. .. . ....++++.++|+|||++++ .++..
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~----- 76 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR----- 76 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc-----
Confidence 356789999988877 589999999921 10 00 0 12457888999999997764 33322
Q ss_pred hHHHHHHHHHHHcCCeEE
Q 041517 296 GVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 296 GV~~Av~~f~~~~gl~v~ 313 (327)
... +...+++.|+.+.
T Consensus 77 -~~~-~~~al~~~GF~l~ 92 (227)
T PRK13699 77 -VDR-FMAAWKNAGFSVV 92 (227)
T ss_pred -HHH-HHHHHHHCCCEEe
Confidence 112 2333456677653
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.19 Score=50.79 Aligned_cols=40 Identities=13% Similarity=0.306 Sum_probs=34.4
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
.||+||+|+|..++..+++ + .-.|+++|.+.-|.+.|++.
T Consensus 69 ~vLdigtGTGLLSmMAvra----g-aD~vtA~EvfkPM~d~arkI 108 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRA----G-ADSVTACEVFKPMVDLARKI 108 (636)
T ss_pred EEEEccCCccHHHHHHHHh----c-CCeEEeehhhchHHHHHHHH
Confidence 5899999999999988886 3 45699999999999988763
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.39 E-value=1 Score=42.31 Aligned_cols=116 Identities=19% Similarity=0.086 Sum_probs=57.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|+|+|.-++.+|... ..+++.=|.-.-...+. .+.+ ..|+...+..+.+.-.
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~~~~~L~-~~~~--------------~~~~~l~~~g~~v~v~ 145 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL-----GAEVVLTDLPKVVENLK-FNRD--------------KNNIALNQLGGSVIVA 145 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh-----cceeccCCchhhHHHHH-Hhhh--------------hhhhhhhhcCCceeEE
Confidence 57799999999998888888742 56666666644322211 1100 1123322332232223
Q ss_pred EeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+.-+.+.+.-...+.++|+|.. |.--.....-.-+..+..+|..++++.+--..+
T Consensus 146 ~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 146 ILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 33444444322121222788773 332212222234556666777777555544433
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.76 Score=44.49 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+.+.+||+=+|.|.-|..|++. ++ +++|+++|.++...+.+++
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~---l~-~g~vigiD~D~~Al~~ak~ 62 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQ---LG-TGRLIGIDRDPQAIAFAKE 62 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHh---CC-CCEEEEEcCCHHHHHHHHH
Confidence 3579999999999999999985 45 4999999999998887765
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.87 Score=44.64 Aligned_cols=98 Identities=17% Similarity=0.119 Sum_probs=62.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
-...+|||-|.|..+-.+... .+. |-+|+.+......+.. ++. .| |.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~----fp~--ik~infdlp~v~~~a~-------------------~~~-~g-------V~ 224 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK----YPH--IKGINFDLPFVLAAAP-------------------YLA-PG-------VE 224 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh----CCC--CceeecCHHHHHhhhh-------------------hhc-CC-------cc
Confidence 368999999999999888873 334 5555554443322221 111 11 45
Q ss_pred eeecchhhhhhhcCCcEeEEEEc---CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEID---AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfID---a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...|+..+..| +-|+||+= ++...++..+.|+.++.-|+|||.||+-|...
T Consensus 225 ~v~gdmfq~~P----~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 225 HVAGDMFQDTP----KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred eecccccccCC----CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 55555544333 35799875 33344667778999999999999777766644
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.25 Score=46.18 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=65.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
-..+++|||+.|+.+-++..- + -++++-+|++-+|.+.++.-.+ .-+.+.
T Consensus 73 fp~a~diGcs~G~v~rhl~~e----~-vekli~~DtS~~M~~s~~~~qd-------------------------p~i~~~ 122 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE----G-VEKLIMMDTSYDMIKSCRDAQD-------------------------PSIETS 122 (325)
T ss_pred CcceeecccchhhhhHHHHhc----c-hhheeeeecchHHHHHhhccCC-------------------------CceEEE
Confidence 357999999999998886652 2 5789999999998875543211 111133
Q ss_pred eeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 236 FSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
...+| .+.|+.-+.++|||+.- +.|--++.-..+..+...|||.|+.|..
T Consensus 123 ~~v~D-EE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 123 YFVGD-EEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred EEecc-hhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 33333 24455546789998855 2343344445677888899999987753
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.63 Score=42.44 Aligned_cols=36 Identities=8% Similarity=-0.038 Sum_probs=31.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
...|+|+=-|.||.|..++-+ +++.|+|+++=+.+-
T Consensus 49 g~tVid~~PGgGy~TrI~s~~---vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPA---VGPKGKVYAYVPAEL 84 (238)
T ss_pred CCEEEEEecCCccHhhhhchh---cCCceeEEEecchhh
Confidence 468999999999999999996 788999999987653
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.66 E-value=0.27 Score=45.82 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=46.3
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc--CCcccceE
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA--IDSVLPVP 235 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~--~~~v~~V~ 235 (327)
+|||+=+|.|.=++.+|.. +++|+++|-++-...+.+.- +++...... .+-...|.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dG----------------L~r~~~~~~~~~~~~~ri~ 135 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDG----------------LKRAQQDPELLAEAMRRIQ 135 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHH----------------HHHHHHSTTTHHHHHHHEE
T ss_pred EEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHH----------------HHHHHhCcHhHHHHHhCCE
Confidence 8999999999999999974 68999999988655433321 001100000 00001289
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHD 262 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~ 262 (327)
+..+++.+.|...+.+||+|++|-..+
T Consensus 136 l~~~d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 136 LIHGDALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp EEES-CCCHCCCHSS--SEEEE--S--
T ss_pred EEcCCHHHHHhhcCCCCCEEEECCCCC
Confidence 999999998875468999999997754
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.3 Score=46.61 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+...||++||.-|.=.-..++ .+|.++-|++||+.+--+- . ++. ++.+.|....+
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q---~~pv~slivGvDl~pikp~-~----------~c~----t~v~dIttd~c------- 98 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQ---SMPVGSLIVGVDLVPIKPI-P----------NCD----TLVEDITTDEC------- 98 (780)
T ss_pred ccchheeeccCCcHHHHHHHH---hCCCCceEEEeeeeecccC-C----------ccc----hhhhhhhHHHH-------
Confidence 467899999999975444444 5788999999999875331 0 000 01111111000
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCc------------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNS------------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN 302 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~------------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~ 302 (327)
++ .-...+..| +.|+|.-|+.|..-. ++..++.+...|+.||. ++++++.+.+|+++-.-+.
T Consensus 99 r~---~l~k~l~t~--~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~-fvtkvfrs~dy~~ll~v~~ 172 (780)
T KOG1098|consen 99 RS---KLRKILKTW--KADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGT-FVTKVFRSEDYNGLLRVFG 172 (780)
T ss_pred HH---HHHHHHHhC--CCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCc-cccccccCCcchHHHHHHH
Confidence 00 000122233 459999998875322 56678888999999999 7888888889999766655
Q ss_pred HHH
Q 041517 303 LFA 305 (327)
Q Consensus 303 ~f~ 305 (327)
.++
T Consensus 173 qLf 175 (780)
T KOG1098|consen 173 QLF 175 (780)
T ss_pred HHH
Confidence 554
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=89.42 E-value=4 Score=36.33 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=65.3
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|-=||. ||-++.+|.++.. .+.+|+++|+++...+...+- . ....++.+.+-+.+++. .+ + +.+.
T Consensus 2 ~I~ViGl--GyvGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g-~--~p~~E~~l~~ll~~~~~-~~---~---l~~t 67 (185)
T PF03721_consen 2 KIAVIGL--GYVGLPLAAALAE--KGHQVIGVDIDEEKVEALNNG-E--LPIYEPGLDELLKENVS-AG---R---LRAT 67 (185)
T ss_dssp EEEEE----STTHHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTT-S--SSS-CTTHHHHHHHHHH-TT---S---EEEE
T ss_pred EEEEECC--CcchHHHHHHHHh--CCCEEEEEeCChHHHHHHhhc-c--ccccccchhhhhccccc-cc---c---chhh
Confidence 4556666 6766666665432 368999999998755432221 1 11112222222222322 12 2 4544
Q ss_pred ecchhhhhhhcCCcEeEEEEcCC------C--CCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHH-HHHHHHHHc
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAG------H--DFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRR-AVNLFAKIN 308 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~------h--~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~-Av~~f~~~~ 308 (327)
.. ..+.+. ..|++||-.. . +...+...++.+.+.+++|-+|++---.. ||..+ -+..+.++.
T Consensus 68 ~~-~~~ai~----~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvp----pGtt~~~~~~ile~~ 138 (185)
T PF03721_consen 68 TD-IEEAIK----DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVP----PGTTEELLKPILEKR 138 (185)
T ss_dssp SE-HHHHHH----H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSS----TTHHHHHHHHHHHHH
T ss_pred hh-hhhhhh----ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEE----EeeehHhhhhhhhhh
Confidence 32 223222 3678886422 1 12336677889999999999999866664 78665 555555544
Q ss_pred C
Q 041517 309 G 309 (327)
Q Consensus 309 g 309 (327)
+
T Consensus 139 ~ 139 (185)
T PF03721_consen 139 S 139 (185)
T ss_dssp C
T ss_pred c
Confidence 3
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.95 Score=42.04 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=37.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC----CcEEEEEeCCCCChhhhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL----DSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~----~~~V~~ID~~~~~~~~A~~~ 202 (327)
+-+|+|+|.|+|..+.-+.+.++...+ ..+++.||+++.+.+..++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~ 69 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKER 69 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHH
Confidence 468999999999999999999886633 57999999999998766554
|
; PDB: 4F3N_A 1ZKD_B. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=88.63 E-value=2.1 Score=41.82 Aligned_cols=100 Identities=24% Similarity=0.302 Sum_probs=62.5
Q ss_pred CCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.++|+=+|+|. |..++.+|+. ++ -.+|+.+|.++.-.++|++.... +. +
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~---~G-a~~Viv~d~~~~Rl~~A~~~~g~-----------------------~~---~ 218 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKL---LG-ASVVIVVDRSPERLELAKEAGGA-----------------------DV---V 218 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHH---cC-CceEEEeCCCHHHHHHHHHhCCC-----------------------eE---e
Confidence 45899999953 4445445553 44 68999999998877777663210 00 1
Q ss_pred Eeeec-chhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSG-SALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~g-da~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..... +..+....+ +..+|++|-=... ...++.+.+.++|||.+++--+.-
T Consensus 219 ~~~~~~~~~~~~~~~t~g~g~D~vie~~G~-----~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 219 VNPSEDDAGAEILELTGGRGADVVIEAVGS-----PPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred ecCccccHHHHHHHHhCCCCCCEEEECCCC-----HHHHHHHHHHhcCCCEEEEEeccC
Confidence 11111 222222222 2469998876652 258899999999999888866654
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.51 E-value=0.9 Score=44.91 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=35.9
Q ss_pred CcEeEEEE-c---CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 250 VVGDLIEI-D---AGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 250 ~~fDLIfI-D---a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
..+++|++ | -+....+....++.+|.+++|||.+++..-.....|.-+.+|=..+.+
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~I~rAR~~ll~ 244 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFERILRARQILLA 244 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHHHHHHHHHHHhc
Confidence 45777664 2 112223455689999999999999998777664444445555444443
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.17 E-value=5.7 Score=40.76 Aligned_cols=128 Identities=9% Similarity=0.010 Sum_probs=68.6
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|.=||+ |+.++.+|..+...+.+.+|+++|.+++..+.-++-. ....+..+ ..++.+. ...+ +.+.
T Consensus 3 ~I~ViG~--GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~---~~~~e~gl-~ell~~~----~~~~---l~~t 69 (473)
T PLN02353 3 KICCIGA--GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQ---LPIYEPGL-DEVVKQC----RGKN---LFFS 69 (473)
T ss_pred EEEEECC--CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCC---CccCCCCH-HHHHHHh----hcCC---EEEE
Confidence 5677777 6666666655444555789999999887665332211 01111111 1222221 1111 4444
Q ss_pred ecchhhhhhhcCCcEeEEEEcCC-----------C--CCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAG-----------H--DFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~-----------h--~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
... .+.+ ...|+|||--. + +...+....+.+.+.|++|-+||.--... +|..+.+...
T Consensus 70 ~~~-~~~i----~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp----~Gtt~~~~~~ 140 (473)
T PLN02353 70 TDV-EKHV----AEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVP----VKTAEAIEKI 140 (473)
T ss_pred cCH-HHHH----hcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCC----CChHHHHHHH
Confidence 332 2222 23577776211 1 11246677788888999988888876665 6766555554
Q ss_pred HHH
Q 041517 305 AKI 307 (327)
Q Consensus 305 ~~~ 307 (327)
..+
T Consensus 141 l~~ 143 (473)
T PLN02353 141 LTH 143 (473)
T ss_pred HHh
Confidence 443
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.9 Score=44.61 Aligned_cols=118 Identities=16% Similarity=0.090 Sum_probs=61.3
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.+|+=+|+|. |..++..|+ .++ .+|+++|.+++-.+.+++........ |....+.....+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak---~lG--A~V~a~D~~~~rle~aeslGA~~v~i-----------~~~e~~~~~~gy 226 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAG---SLG--AIVRAFDTRPEVAEQVESMGAEFLEL-----------DFEEEGGSGDGY 226 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHH---HCC--CEEEEEeCCHHHHHHHHHcCCeEEEe-----------ccccccccccch
Confidence 3578999999964 445555555 455 47999999988777666532100000 000000000000
Q ss_pred ceEeeecchh----hhhhhcCCcEeEEEEcCCCCCCcHHHH-HHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSAL----TKLCEWGVVGDLIEIDAGHDFNSAWAD-INRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~----~~L~~l~~~fDLIfIDa~h~~~~v~~d-l~~~~~lL~pGGvIi~dD~ 288 (327)
+...+.+.. +.+.+....+|+|+--+..+....-.. .+...+.+||||+|+.--+
T Consensus 227 -a~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 227 -AKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred -hhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 000111111 111111245899887666543211134 4999999999998875443
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.06 E-value=6.4 Score=35.89 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=59.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|+.-|.=+-..-+ ..+|.|.|.+||+-.-.+-..-.... ....-++..+.
T Consensus 70 ~~~VlD~G~APGsWsQVavq---r~~p~g~v~gVDllh~~p~~Ga~~i~-~~dvtdp~~~~------------------- 126 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQ---RVNPNGMVLGVDLLHIEPPEGATIIQ-GNDVTDPETYR------------------- 126 (232)
T ss_pred CCEEEEccCCCChHHHHHHH---hhCCCceEEEEeeeeccCCCCccccc-ccccCCHHHHH-------------------
Confidence 57999999999976655444 46789999999995432211000000 00000111110
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCc------------HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNS------------AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~------------v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.-.+.|+ +.+.|+|..|-.+-... ....+..+..+++|+|..++--|.-
T Consensus 127 ----ki~e~lp--~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 127 ----KIFEALP--NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred ----HHHHhCC--CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 0112222 37889999885542111 1223455678899999999977765
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.47 E-value=0.91 Score=36.88 Aligned_cols=89 Identities=22% Similarity=0.386 Sum_probs=57.4
Q ss_pred chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhh
Q 041517 166 LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKL 245 (327)
Q Consensus 166 ~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L 245 (327)
.|..++.+|++ ++ .+|+++|.++.-.+.+++.. . +.+ +.....+..+.+
T Consensus 2 vG~~a~q~ak~---~G--~~vi~~~~~~~k~~~~~~~G-----------------------a-~~~--~~~~~~~~~~~i 50 (130)
T PF00107_consen 2 VGLMAIQLAKA---MG--AKVIATDRSEEKLELAKELG-----------------------A-DHV--IDYSDDDFVEQI 50 (130)
T ss_dssp HHHHHHHHHHH---TT--SEEEEEESSHHHHHHHHHTT-----------------------E-SEE--EETTTSSHHHHH
T ss_pred hHHHHHHHHHH---cC--CEEEEEECCHHHHHHHHhhc-----------------------c-ccc--cccccccccccc
Confidence 48888889986 44 99999999876555554432 1 010 222222333444
Q ss_pred hhc-C-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 246 CEW-G-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 246 ~~l-~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+ + ..+|.||-=.+. . ..++.++..|++||.+++--...
T Consensus 51 ~~~~~~~~~d~vid~~g~---~--~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 51 RELTGGRGVDVVIDCVGS---G--DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHTTTSSEEEEEESSSS---H--HHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccccccccceEEEEecCc---H--HHHHHHHHHhccCCEEEEEEccC
Confidence 443 2 479988765542 2 68899999999999998866553
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.57 Score=44.78 Aligned_cols=111 Identities=20% Similarity=0.091 Sum_probs=69.9
Q ss_pred hhccCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 135 RRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 135 ~~~~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
.+...|++..+|+..+- ....++++|||.|.-+. ..|..-++++|...+....+++...
T Consensus 28 tr~~~Wp~v~qfl~~~~---~gsv~~d~gCGngky~~--------~~p~~~~ig~D~c~~l~~~ak~~~~---------- 86 (293)
T KOG1331|consen 28 TRAAPWPMVRQFLDSQP---TGSVGLDVGCGNGKYLG--------VNPLCLIIGCDLCTGLLGGAKRSGG---------- 86 (293)
T ss_pred cccCccHHHHHHHhccC---CcceeeecccCCcccCc--------CCCcceeeecchhhhhccccccCCC----------
Confidence 35567877777766542 26789999999986532 2356789999999988776654210
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC--CC--CCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA--GH--DFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa--~h--~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
......|+.. ++.-..+||.+..=+ .| ....-...+++..+.|+|||-+++-
T Consensus 87 -------------------~~~~~ad~l~-~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 87 -------------------DNVCRADALK-LPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred -------------------ceeehhhhhc-CCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 0111223332 233346777765332 22 1233456789999999999988773
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.2 Score=40.87 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=32.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
--.++|||||.|...+.++- +.|+.-+.+.|+.....+..+
T Consensus 61 kvefaDIGCGyGGLlv~Lsp----~fPdtLiLGmEIR~KVsdYVk 101 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAP----KFPDTLILGMEIRDKVSDYVK 101 (249)
T ss_pred cceEEeeccCccchhhhccc----cCccceeeeehhhHHHHHHHH
Confidence 34699999999999888887 467999999999776555433
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=86.52 E-value=2.4 Score=41.00 Aligned_cols=75 Identities=13% Similarity=-0.000 Sum_probs=40.6
Q ss_pred CEEEEEcCcchHHHHH--HHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCcccc
Q 041517 157 RVIIEVGSFLGASALH--MANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDSVLP 233 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~--lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~v~~ 233 (327)
-++||||| |.|.++ |+.. .. +=++++.|+++...+.|++ |+... ++.++
T Consensus 104 v~glDIGT--GAscIYpLLg~~---~~-~W~fvaTdID~~sl~~A~~-------------------nv~~N~~L~~~--- 155 (299)
T PF05971_consen 104 VRGLDIGT--GASCIYPLLGAK---LY-GWSFVATDIDPKSLESARE-------------------NVERNPNLESR--- 155 (299)
T ss_dssp -EEEEES---TTTTHHHHHHHH---HH---EEEEEES-HHHHHHHHH-------------------HHHHT-T-TTT---
T ss_pred eEeecCCc--cHHHHHHHHhhh---hc-CCeEEEecCCHHHHHHHHH-------------------HHHhccccccc---
Confidence 47999999 666554 3332 22 6899999999999988877 55544 56666
Q ss_pred eEeeecchh-hhhhh---cCCcEeEEEEcC
Q 041517 234 VPFSSGSAL-TKLCE---WGVVGDLIEIDA 259 (327)
Q Consensus 234 V~~~~gda~-~~L~~---l~~~fDLIfIDa 259 (327)
|.+...... ..+.. .++.|||....-
T Consensus 156 I~l~~~~~~~~i~~~i~~~~e~~dftmCNP 185 (299)
T PF05971_consen 156 IELRKQKNPDNIFDGIIQPNERFDFTMCNP 185 (299)
T ss_dssp EEEEE--ST-SSTTTSTT--S-EEEEEE--
T ss_pred eEEEEcCCccccchhhhcccceeeEEecCC
Confidence 555433222 22222 246899998753
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.01 E-value=4.1 Score=40.44 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|+|-=+++|.=++-+|.- .+.. +++.=|+++...+..+++ +......+ ..
T Consensus 53 ~~~v~DalsatGiRgIRya~E---~~~~-~v~lNDisp~Avelik~N-------------------v~~N~~~~----~~ 105 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVE---TGVV-KVVLNDISPKAVELIKEN-------------------VRLNSGED----AE 105 (380)
T ss_pred CeEEeecccccchhHhhhhhh---cCcc-EEEEccCCHHHHHHHHHH-------------------HHhcCccc----ce
Confidence 899999999999999998874 4433 999999999988887764 33221111 33
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
....|+-..|.+....||+|=||- +-.+.-+++.+++-++.||++.+.--..
T Consensus 106 v~n~DAN~lm~~~~~~fd~IDiDP---FGSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 106 VINKDANALLHELHRAFDVIDIDP---FGSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred eecchHHHHHHhcCCCccEEecCC---CCCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 334677676766668899987774 3344578999999999999998765443
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.53 E-value=2.9 Score=42.80 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=70.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
.+++|-||-|.|....++-.. -+...+++|++++.+.+.+++++. |+++... + |.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~----~p~~~i~~ve~dP~~l~va~q~f~-------------f~q~~r~-----~---V~ 350 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMS----LPKFQITAVEIDPEMLEVATQYFG-------------FMQSDRN-----K---VH 350 (482)
T ss_pred cCcEEEEecCCCccccceeee----cCccceeEEEEChhHhhccHhhhc-------------hhhhhhh-----h---hh
Confidence 456777777778777665543 247899999999999999988764 2222210 0 11
Q ss_pred eeecchhhhhhh------cCCcEeEEEEcCCCCC------Cc----HHHHHHHHHccCCCCeEEEEEcCCCCC
Q 041517 236 FSSGSALTKLCE------WGVVGDLIEIDAGHDF------NS----AWADINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 236 ~~~gda~~~L~~------l~~~fDLIfIDa~h~~------~~----v~~dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
+ .++.+.+.+ -+..||++++|-+-.. ++ ....+......|.|.|+++++=+-++.
T Consensus 351 i--~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~ 421 (482)
T KOG2352|consen 351 I--ADGLDFLQRTAKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS 421 (482)
T ss_pred H--hhchHHHHHHhhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence 1 122222211 2468999999966322 11 234567778899999999998887753
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.26 E-value=1.8 Score=43.16 Aligned_cols=80 Identities=11% Similarity=-0.071 Sum_probs=59.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCC----------------------------c-------EEEEEeCCCCChhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLD----------------------------S-------QILCIDDFRGWPGFRD 200 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~----------------------------~-------~V~~ID~~~~~~~~A~ 200 (327)
...++|==||+|-..+-.|...+.+.|+ . .++|+|+++.+.+.|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 3579999999999999888764333331 1 3779999888888776
Q ss_pred hhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEc
Q 041517 201 KFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID 258 (327)
Q Consensus 201 ~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID 258 (327)
. |...+|..+. |.|.++++.+. +..-+.+|+|+.+
T Consensus 272 ~-------------------NA~~AGv~d~---I~f~~~d~~~l-~~~~~~~gvvI~N 306 (381)
T COG0116 272 A-------------------NARAAGVGDL---IEFKQADATDL-KEPLEEYGVVISN 306 (381)
T ss_pred H-------------------HHHhcCCCce---EEEEEcchhhC-CCCCCcCCEEEeC
Confidence 5 7778888887 99999998763 3322678999886
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.22 E-value=1.6 Score=41.34 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=37.6
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCC----CCCc-------------HHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGH----DFNS-------------AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h----~~~~-------------v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+..||+.+.+..+ +++||+|++|--. .+.. ....+.++.++|+|||.|++.
T Consensus 9 ~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 9 KTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788988877665 4799999998431 1100 124568899999999988764
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.80 E-value=2.7 Score=43.64 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=80.0
Q ss_pred HHHHHHHhhcC------CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 145 AVFGNLIDKVR------PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 145 ~lL~~L~~~~~------p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
+++..|..... ..+|+-+|.|.|-..-...++.+.....-++|+||-++...-.
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivt-------------------- 410 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVT-------------------- 410 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhh--------------------
Confidence 35555554421 4578999999998877766666666678899999999975531
Q ss_pred HHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEc-----CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID-----AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID-----a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++|....+..++ |.++++|-.+.- .-.++.|+++.. ||.+--+ +.|+-+.+.|+|.|+-|=-.|-.
T Consensus 411 L~~~n~~~W~~~---Vtii~~DMR~w~-ap~eq~DI~VSELLGSFGDNELSP--ECLDG~q~fLkpdgIsIP~sYtS 481 (649)
T KOG0822|consen 411 LQNRNFECWDNR---VTIISSDMRKWN-APREQADIIVSELLGSFGDNELSP--ECLDGAQKFLKPDGISIPSSYTS 481 (649)
T ss_pred hhhhchhhhcCe---eEEEeccccccC-CchhhccchHHHhhccccCccCCH--HHHHHHHhhcCCCceEccchhhh
Confidence 234334445555 777777754421 112567887643 4444444 89999999999999988766643
|
|
| >COG4121 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.67 E-value=6.6 Score=37.02 Aligned_cols=147 Identities=16% Similarity=0.010 Sum_probs=86.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCC--------CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLG--------LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ- 225 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~--------~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~- 225 (327)
+.-.|+|+|-|+|...+..-...++.. ..-.+++|+.++-.....+..+..+ . ...+.++++.+....
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~p-e--l~~~~~~l~~~~~~~~ 134 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVP-F--LCHLADALAPTGPLAT 134 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhh-h--HHHHHHHHhhccCccc
Confidence 356899999999999877666544322 2346788888875433211111000 0 001112222111100
Q ss_pred ------ccCCcccceEeeecchhhhhhhcCC---cEeEEEEcCCCCC--CcHHH--HHHHHHccCCCCeEEEEEcCCCCC
Q 041517 226 ------NAIDSVLPVPFSSGSALTKLCEWGV---VGDLIEIDAGHDF--NSAWA--DINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 226 ------g~~~~v~~V~~~~gda~~~L~~l~~---~fDLIfIDa~h~~--~~v~~--dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
-..+ .+.+.+..||+.+.++.++. .+|..|.||--+. +.+|. -+....++.+|||.+.-.
T Consensus 135 ~~~~r~~~~g-~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t~------ 207 (252)
T COG4121 135 YGCAAAVRHG-LLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLATF------ 207 (252)
T ss_pred chhHHhhhcc-hheeeeeeeehhhcCCcccccccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceech------
Confidence 0111 22367778999888888776 7999999986543 33444 478889999999998752
Q ss_pred CchhHHHHHHHHHHHcCCeEEE
Q 041517 293 DNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 293 ~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
-...+|+.=....|.+|..
T Consensus 208 ---ssA~~vRr~L~~aGF~v~~ 226 (252)
T COG4121 208 ---AAAIAVRRRLEQAGFTVEK 226 (252)
T ss_pred ---HHHHHHHHHHHHcCceeee
Confidence 1234444445556777776
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=84.45 E-value=5.7 Score=38.90 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=31.4
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.+..+||.+|+|. |..++.+|++ .+ -.+++++|.+++..+.+++
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~---~g-~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKL---LG-AERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cC-CCEEEEEcCCHHHHHHHHH
Confidence 3456899999977 7777777775 33 2469999998776655544
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=84.21 E-value=1.2 Score=41.06 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=66.2
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
-++|||||.+.++.+.... --.|+.||+.+..+.+-++. |++. |++-
T Consensus 53 lrlLEVGals~~N~~s~~~-------~fdvt~IDLns~~~~I~qqD---------------Fm~r-----------plp~ 99 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSG-------WFDVTRIDLNSQHPGILQQD---------------FMER-----------PLPK 99 (219)
T ss_pred ceEEeecccCCCCcccccC-------ceeeEEeecCCCCCCceeec---------------cccC-----------CCCC
Confidence 5899999998887665433 34499999998766554432 1211 0110
Q ss_pred eecchhhhhhhcCCcEeEEEEcCCCCC----CcHHHHHHHHHccCCCCeE-----EEEEcCC---CCCCchhHHHHHHHH
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAGHDF----NSAWADINRAWRILRPGGV-----IFGHDYF---TAADNRGVRRAVNLF 304 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~h~~----~~v~~dl~~~~~lL~pGGv-----Ii~dD~~---~~~~~~GV~~Av~~f 304 (327)
.-.+.||+|..---..| ..-.+-+..+..+|+|+|. +++-=-. .+..+- -.+-+.++
T Consensus 100 ----------~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~-~~~~l~~i 168 (219)
T PF11968_consen 100 ----------NESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM-TEERLREI 168 (219)
T ss_pred ----------CcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc-CHHHHHHH
Confidence 01357888875322222 2234568899999999999 5542111 111111 23566777
Q ss_pred HHHcCCeEE
Q 041517 305 AKINGLKVQ 313 (327)
Q Consensus 305 ~~~~gl~v~ 313 (327)
+...|+...
T Consensus 169 m~~LGf~~~ 177 (219)
T PF11968_consen 169 MESLGFTRV 177 (219)
T ss_pred HHhCCcEEE
Confidence 888887654
|
|
| >TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627 | Back alignment and domain information |
|---|
Probab=83.60 E-value=17 Score=33.52 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=72.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcc-cC---ccccch-HHHHHHH
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKE-IP---MVNGNV-LLYFQFL 219 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~-~~---~~~g~~-~~~~~Fl 219 (327)
.++...++...|.+.|-+|-| .-++.|+. +..+|+-+-+|-++.|....++... ++ .....+ .-....+
T Consensus 29 ~~~~~VL~~raPCN~LVFGLg--hdsllW~a----LN~gGrTvFLEEd~~~i~~~~~~~p~leay~V~Y~t~~~~a~~LL 102 (225)
T TIGR01627 29 KLLSDVLTRRSPCNILVFGLA--HQYLMWSS----LNHRGRTVFIEEEKIMIAKAEVNPPNTRIYSVKYHTKVRNAYNLL 102 (225)
T ss_pred HHHHHHHHhcCCceEEEeccC--cchHHHHH----hcCCCeeEEecCCHHHHHHHhhcCCcceEEEEEeehhhhhHHHHH
Confidence 455666677789999999984 44455555 4668888999999998887655331 11 011111 0011222
Q ss_pred HHHhhhccCCcccceE----e-eecchhhhhhh--cCCcEeEEEEcCCCCCCc----HHHHH--HHHHccCCCC---eEE
Q 041517 220 QNVIYQNAIDSVLPVP----F-SSGSALTKLCE--WGVVGDLIEIDAGHDFNS----AWADI--NRAWRILRPG---GVI 283 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~----~-~~gda~~~L~~--l~~~fDLIfIDa~h~~~~----v~~dl--~~~~~lL~pG---GvI 283 (327)
+... +..++ .|+. + ...-++..||. ++...|+|.|||-..|.+ -+..| ...+.+-+.| .=+
T Consensus 103 ~~~~--~~~~C-~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~aIyTAav~AR~r~~g~~TdV 179 (225)
T TIGR01627 103 QHAR--ANPEC-RPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGSTTDV 179 (225)
T ss_pred HHhc--cCCcc-cCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhhHHHHHHHHHhccCCCCceE
Confidence 1111 10111 1221 1 11123333443 357899999998754422 22222 2233334434 368
Q ss_pred EEEcCCC
Q 041517 284 FGHDYFT 290 (327)
Q Consensus 284 i~dD~~~ 290 (327)
++||+.+
T Consensus 180 fVHDvdR 186 (225)
T TIGR01627 180 FVHDVHR 186 (225)
T ss_pred EEecCCc
Confidence 9999986
|
This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.77 E-value=0.99 Score=43.91 Aligned_cols=63 Identities=24% Similarity=0.401 Sum_probs=39.9
Q ss_pred CcEeEE----EEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC-C-CCCch------hHH---HHHHHHHHHcCCeEEE
Q 041517 250 VVGDLI----EIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF-T-AADNR------GVR---RAVNLFAKINGLKVQI 314 (327)
Q Consensus 250 ~~fDLI----fIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~-~-~~~~~------GV~---~Av~~f~~~~gl~v~~ 314 (327)
+.||.| |||..| .++++++.+...|+|||+.|=-.-. + -.+.+ +|. +-+...+...|+.+..
T Consensus 258 ~~~d~VvTcfFIDTa~---NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAH---NILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred CccceEEEEEEeechH---HHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 367877 689887 4789999999999999987732111 1 01112 333 3344555667877764
Q ss_pred c
Q 041517 315 D 315 (327)
Q Consensus 315 ~ 315 (327)
.
T Consensus 335 e 335 (369)
T KOG2798|consen 335 E 335 (369)
T ss_pred e
Confidence 3
|
|
| >PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO) | Back alignment and domain information |
|---|
Probab=81.43 E-value=1.4 Score=35.04 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=25.7
Q ss_pred cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 248 WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 248 l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+|++++|+.....+ +++-.+...++-||+|++-
T Consensus 8 LG~e~~~~i~d~~~g~~p--nal~a~~gtv~gGGllill 44 (92)
T PF08351_consen 8 LGQEFDLLIFDAFEGFDP--NALAALAGTVRGGGLLILL 44 (92)
T ss_dssp TT--BSSEEEE-SS---H--HHHHHHHTTB-TT-EEEEE
T ss_pred hCCccCEEEEEccCCCCH--HHHHHHhcceecCeEEEEE
Confidence 577899999999888877 9999999999999987764
|
; PDB: 2ZPA_B. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=81.17 E-value=3.3 Score=40.20 Aligned_cols=52 Identities=12% Similarity=-0.011 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+++..|. ..+.+.+||+=.|.|.-|..|.+. +++ ++|+++|-++.+.+.+++
T Consensus 11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~---~~~-~~li~~DrD~~a~~~a~~ 62 (310)
T PF01795_consen 11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEK---LPN-GRLIGIDRDPEALERAKE 62 (310)
T ss_dssp HHHHHHT---TT-EEEETT-TTSHHHHHHHHT----TT--EEEEEES-HHHHHHHHC
T ss_pred HHHHhhC-cCCCceEEeecCCcHHHHHHHHHh---CCC-CeEEEecCCHHHHHHHHH
Confidence 4555553 334679999999999999999984 554 999999999998877765
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.11 E-value=7.5 Score=37.23 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=53.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+||=+|+ |..+....+.++.++ -.+|+++|.+++-.+.+++.. . +.+ +
T Consensus 169 ~g~~VlV~G~--G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~lG-----------------------a-~~v--i 219 (343)
T PRK09880 169 QGKRVFVSGV--GPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAREMG-----------------------A-DKL--V 219 (343)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHcC-----------------------C-cEE--e
Confidence 3567887886 445444444443343 247999998876655554421 1 000 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.....+..+.. ...+.+|+||--... + ..++.+++.|++||.++.-..
T Consensus 220 ~~~~~~~~~~~-~~~g~~D~vid~~G~---~--~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 220 NPQNDDLDHYK-AEKGYFDVSFEVSGH---P--SSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred cCCcccHHHHh-ccCCCCCEEEECCCC---H--HHHHHHHHHhhcCCEEEEEcc
Confidence 11111111211 112358987643332 1 457788899999998887544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.82 E-value=3 Score=37.10 Aligned_cols=124 Identities=20% Similarity=0.125 Sum_probs=62.3
Q ss_pred CCchHHHHHHHHHh---hcCCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 139 GWGSYGAVFGNLID---KVRPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 139 gw~~~g~lL~~L~~---~~~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
-|+....+-...++ ..+.+.|+|+|-| +|.+++.+|. ..++..|..-|-+++..+-.++....
T Consensus 10 iwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~----~a~~~~v~ltdgne~svrnv~ki~~~--------- 76 (201)
T KOG3201|consen 10 IWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIAC----KAPDSSVWLTDGNEESVRNVEKIRNS--------- 76 (201)
T ss_pred ecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheee----ecCCceEEEecCCHHHHHHHHHHHhc---------
Confidence 46554433333333 2346899999975 4555555654 24578888888887665433332111
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
|... +.+.. ..++...-.+. .......||.|.. |+-.-.+....-.+.+..+|+|.|.-++
T Consensus 77 ------n~~s-~~tsc-~vlrw~~~~aq--sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 77 ------NMAS-SLTSC-CVLRWLIWGAQ--SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred ------cccc-cccee-hhhHHHHhhhH--HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence 1111 11000 00111111111 1122458998874 4443122223446778889999886554
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=80.58 E-value=2.1 Score=37.78 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=37.8
Q ss_pred HHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 144 GAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 144 g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
-++++.|++.. +...|||-=+|+|.+++...+. +.+.+++|++++..++|+
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhc
Confidence 45778887654 4679999999999887776654 788999999998877664
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.25 E-value=3.1 Score=41.21 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=38.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC----CcEEEEEeCCCCChhhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL----DSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~----~~~V~~ID~~~~~~~~A~~ 201 (327)
+-.++|||.|+|..+.-|.+.++++.| ..+++.||+++......++
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE 127 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence 468999999999999999999877764 7899999999987654433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 327 | ||||
| 2bm8_A | 236 | Cmci-N160 Apo-Structure Length = 236 | 7e-04 | ||
| 2br3_A | 236 | Cmci-D160 Mg Length = 236 | 7e-04 |
| >pdb|2BM8|A Chain A, Cmci-N160 Apo-Structure Length = 236 | Back alignment and structure |
|
| >pdb|2BR3|A Chain A, Cmci-D160 Mg Length = 236 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} Length = 282 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 2e-08
Identities = 23/175 (13%), Positives = 53/175 (30%), Gaps = 11/175 (6%)
Query: 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGL-DSQILCIDDFRGWPGFRDKFKEI 205
++I P ++E G + G + + M + R + D + D F+G P +
Sbjct: 98 VEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAG 157
Query: 206 PMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVG------DLIEIDA 259
+ + L + + ++ +D
Sbjct: 158 DRKMALHRRNSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMD- 216
Query: 260 GHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQI 314
G + S W + + + GG + DY + AV+ + + ++
Sbjct: 217 GDLYESTWDTLTNLYPKVSVGGYVIVDDYM---MCPPCKDAVDEYRAKFDIADEL 268
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 21/155 (13%), Positives = 41/155 (26%), Gaps = 34/155 (21%)
Query: 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGF-R 199
G + I + G L++ L ++ + CID +
Sbjct: 42 GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYIL---NGLADNTTLTCIDPESEHQRQAK 98
Query: 200 DKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA 259
F+E V + +D +++L L+
Sbjct: 99 ALFREAGYSPSRV--------RFLLSRPLDV-----------MSRLANDSY--QLVFGQV 137
Query: 260 GHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
A ++ AW +LR GG + +
Sbjct: 138 --SPMDLKALVDAAWPLLRRGGAL-------VLAD 163
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-07
Identities = 27/154 (17%), Positives = 56/154 (36%), Gaps = 33/154 (21%)
Query: 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGF-RDKF 202
G + +I + P +++E+G++ G SA+ MA R L +++L ++ +
Sbjct: 47 GQIMDAVIREYSPSLVLELGAYCGYSAVRMA---RLLQPGARLLTMEINPDCAAITQQML 103
Query: 203 KEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVG--DLIEIDAG 260
+ V ++ + D + +L + V D++ +D
Sbjct: 104 NFAG-LQDKV--------TILNGASQDL-----------IPQLKKKYDVDTLDMVFLDHW 143
Query: 261 HDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
D + +LR G V+ ADN
Sbjct: 144 KDRYLPDTLLLEKCGLLRKGTVL-------LADN 170
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 39/179 (21%)
Query: 124 PPPHISHLLRRRRIKGWGSY------GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLT 177
P + L + G + NL ++ + +++G+F G SAL +A
Sbjct: 32 EHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALA--- 88
Query: 178 RQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237
L D +++ + P + ++ + A+++
Sbjct: 89 LALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKI--------DLRLKPALET------- 133
Query: 238 SGSALTKLCEWGVVG--DLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
L +L G G D+ +DA D + A R ++LRPGG++ A
Sbjct: 134 ----LDELLAAGEAGTFDVAVVDA--DKENCSAYYERCLQLLRPGGIL-------AVLR 179
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} Length = 257 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 8e-07
Identities = 30/205 (14%), Positives = 57/205 (27%), Gaps = 21/205 (10%)
Query: 127 HISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQL---GLD 183
++ LRR ++ S A++ ++D P VI+E G G A L
Sbjct: 43 NLPLFLRRHQMTDLLSMDALYRQVLDV--PGVIMEFGVRFGRHLGTFAALRGVYEPYNPL 100
Query: 184 SQILCIDDFRG--------------WPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229
+I+ D F G + G P VL + +
Sbjct: 101 RRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECSDFFGHVTQRS 160
Query: 230 SVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289
++ V L D + A + L G ++ +
Sbjct: 161 VLVEGDVRETVPRYLAENPQTVIALAYFDLDL-YEPTKAVLEAIRPYLTKGSIVAFDELD 219
Query: 290 TAADNRGVRRAVNLFAKINGLKVQI 314
G A+ ++ +++
Sbjct: 220 NP-KWPGENIAMRKVLGLDHAPLRL 243
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 8e-07
Identities = 40/265 (15%), Positives = 83/265 (31%), Gaps = 69/265 (26%)
Query: 84 SLLDNFR-VTTRCAADSVPPQLVRQTII---DRIFNGTSPY----VNFPPPHI---SHLL 132
L N++ + + + P ++ + I DR++N + V+ P++ LL
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 133 RRRRIKGWGSYGAV-FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD 191
R K G + G K +++ L ++ C D
Sbjct: 146 ELRPAKNVLIDGVLGSG----K----------TWVALDVC----------LSYKVQCKMD 181
Query: 192 FRG-WPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKL----C 246
F+ W ++ ++ L +Q N + + D + S +L
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 247 EWGVVGDLIEIDAGHDFNSAWA----DINRAWRIL---RPGGVIFGHDYFTAADNRGVR- 298
L+ + + +A A +++ +IL R V D+ +AA +
Sbjct: 240 SKPYENCLLVLL---NVQNAKAWNAFNLS--CKILLTTRFKQVT---DFLSAATTTHISL 291
Query: 299 ----------RAVNLFAKINGLKVQ 313
+L K + Q
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQ 316
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 38/180 (21%), Positives = 61/180 (33%), Gaps = 41/180 (22%)
Query: 124 PPPHISHLLRRRRIKGWGSY------GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLT 177
P ++ L + + LI R + ++E+G+F G SAL M+
Sbjct: 23 EHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMS--- 79
Query: 178 RQLGLDSQILCIDDFRGWPGF-RDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236
L D Q++ D GW ++E + + A+D+
Sbjct: 80 LALPDDGQVITCDINEGWTKHAHPYWREAK-QEHKI--------KLRLGPALDT------ 124
Query: 237 SSGSALTKLCEWGVVG--DLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
L L G D I IDA D + A +++ P G+I A DN
Sbjct: 125 -----LHSLLNEGGEHQFDFIFIDA--DKTNYLNYYELALKLVTPKGLI-------AIDN 170
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 35/154 (22%)
Query: 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGF-RDKF 202
+ L+ ++ + +I++G+F G SA+ M L D ++ D ++ +
Sbjct: 53 AQLLALLVKLMQAKKVIDIGTFTGYSAIAMG---LALPKDGTLITCDVDEKSTALAKEYW 109
Query: 203 KEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVG--DLIEIDAG 260
++ ++ + + A D+ L +L G DLI IDA
Sbjct: 110 EKAG-LSDKI--------GLRLSPAKDT-----------LAELIHAGQAWQYDLIYIDA- 148
Query: 261 HDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
D + + ++LR GG+I A DN
Sbjct: 149 -DKANTDLYYEESLKLLREGGLI-------AVDN 174
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-06
Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 41/180 (22%)
Query: 124 PPPHISHLLRRRRIKGWGSY------GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLT 177
+++ L R G LI + ++E+G F G SAL MA
Sbjct: 35 DSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMA--- 91
Query: 178 RQLGLDSQILCIDDFRGWPGF-RDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236
QL D QI+ D + +++ V + ++ A+ +
Sbjct: 92 LQLPPDGQIIACDQDPNATAIAKKYWQKAG-VAEKI--------SLRLGPALAT------ 136
Query: 237 SSGSALTKLCEWGVVG--DLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
L +L + + DLI IDA + +LR GG++ DN
Sbjct: 137 -----LEQLTQGKPLPEFDLIFIDADKRNYPRY--YEIGLNLLRRGGLM-------VIDN 182
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 40/178 (22%)
Query: 124 PPPHISHLLRRRRIKGWGSY------GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLT 177
P + +L G ++ G L+ + + I+E+G+ G S + MA
Sbjct: 26 GDPVLDRVLENNHRAGLPAHDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMA--- 82
Query: 178 RQLGLDSQILCIDDFRGWPGF-RDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236
R+L D Q+L ++ R+ + V+ V + A+ S
Sbjct: 83 RELPADGQLLTLEADAHHAQVARENLQLAG-VDQRV--------TLREGPALQS------ 127
Query: 237 SSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
L L E DLI IDA D + + A R RPG +I DN
Sbjct: 128 -----LESLGECPAF-DLIFIDA--DKPNNPHYLRWALRYSRPGTLI-------IGDN 170
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 31/155 (20%), Positives = 52/155 (33%), Gaps = 36/155 (23%)
Query: 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGF-RDKF 202
G + ++ V + IEVG F G S L A + D +I ID R
Sbjct: 59 GQLMSFVLKLVNAKKTIEVGVFTGYSLLLTA---LSIPDDGKITAIDFDREAYEIGLPFI 115
Query: 203 KEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVG---DLIEIDA 259
++ V + N I +A+ + L L + D +DA
Sbjct: 116 RKAG-VEHKI--------NFIESDAMLA-----------LDNLLQGQESEGSYDFGFVDA 155
Query: 260 GHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
+ R ++++ GG++ A DN
Sbjct: 156 DKPNYIKY--HERLMKLVKVGGIV-------AYDN 181
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 41/181 (22%), Positives = 66/181 (36%), Gaps = 32/181 (17%)
Query: 124 PPPHISHLLRRRRIKGWGSY------GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLT 177
P L + + G L + IIE+G+F G S+L A
Sbjct: 23 EPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFA--- 79
Query: 178 RQLGLDSQILCIDDFRGWPGF-RDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236
L D +ILC D W R +KE + + + +A+++ L V
Sbjct: 80 SALPEDGKILCCDVSEEWTNVARKYWKENG-LENKI--------FLKLGSALET-LQVLI 129
Query: 237 SSGSALTKLCEWGVVG---DLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD 293
S SA + ++ DL +DA D + ++L+PGG++ AD
Sbjct: 130 DSKSAPSWASDFAFGPSSIDLFFLDA--DKENYPNYYPLILKLLKPGGLL-------IAD 180
Query: 294 N 294
N
Sbjct: 181 N 181
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 35/179 (19%), Positives = 59/179 (32%), Gaps = 40/179 (22%)
Query: 124 PPPHISHLLRRRRIKGWGSY------GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLT 177
+ +L+ ++ G L+ R I+E+G+ G S + +A
Sbjct: 21 KDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLA--- 77
Query: 178 RQLGLDSQILCIDDFRGWPGF-RDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236
R L +++ ++ R + +N V V A+DS
Sbjct: 78 RGLSSGGRVVTLEASEKHADIARSNIERAN-LNDRV--------EVRTGLALDS------ 122
Query: 237 SSGSALTKLCEWGVVG-DLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
L ++ D I IDA D + A A ++ RPG VI DN
Sbjct: 123 -----LQQIENEKYEPFDFIFIDA--DKQNNPAYFEWALKLSRPGTVI-------IGDN 167
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 27/154 (17%), Positives = 51/154 (33%), Gaps = 34/154 (22%)
Query: 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFK 203
G L+ + + +E+G + G S L A + D +IL +D +
Sbjct: 68 GQFLSMLLKLINAKNTMEIGVYTGYSLLATA---LAIPEDGKILAMDINKENYELGLPVI 124
Query: 204 EIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVG---DLIEIDAG 260
+ V+ + + A+ L ++ + D I +DA
Sbjct: 125 KKAGVDHKI--------DFREGPALPV-----------LDEMIKDEKNHGSYDFIFVDA- 164
Query: 261 HDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
D ++ R +++ GGVI DN
Sbjct: 165 -DKDNYLNYHKRLIDLVKVGGVI-------GYDN 190
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 5e-05
Identities = 31/178 (17%), Positives = 65/178 (36%), Gaps = 43/178 (24%)
Query: 124 PPPHISHLLRRRRIKGWG----SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQ 179
+I + R + +L+ P I+E+G+ +G SA+ MA
Sbjct: 19 RDQYIEQMEREAHEQQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMA----- 73
Query: 180 LGL-DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSS 238
L ++ I+ I+ ++ E + ++ + ++ I+ +
Sbjct: 74 QALPEATIVSIE-------RDERRYEEAH---------KHVKALGLESRIELLF------ 111
Query: 239 GSALTKLCEWGVVG--DLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
G AL + + D++ IDA + + ++RPGG+I +DN
Sbjct: 112 GDALQLGEKLELYPLFDVLFIDAAKGQYRRF--FDMYSPMVRPGGLI-------LSDN 160
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 9e-05
Identities = 21/152 (13%), Positives = 47/152 (30%), Gaps = 37/152 (24%)
Query: 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGF-RDKF 202
G + L +P++++ G LG ++ A R + + S+++ ID R R
Sbjct: 45 GRLLYLLARIKQPQLVVVPGDGLGCASWWFA---RAISISSRVVMIDPDRDNVEHARRML 101
Query: 203 KEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD 262
+ + V + + + + D++ +D
Sbjct: 102 HDNG-LIDRV--------ELQVGDPLGI-----------AAGQRDI----DILFMDCDVF 137
Query: 263 FNSAWADINRAWRILRPGGVIFGHDYFTAADN 294
+ + R R L ++ A N
Sbjct: 138 NGADV--LERMNRCLAKNALL-------IAVN 160
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 99.88 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.84 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.83 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 99.8 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.79 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.78 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.78 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.77 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.75 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.74 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.74 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.73 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.72 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.71 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.7 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.62 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.59 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.53 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.4 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.4 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.37 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.36 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.35 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.35 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.34 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.32 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.32 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.31 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.29 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.27 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.27 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.27 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.27 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.27 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.27 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.26 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.26 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.25 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.24 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.23 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.23 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.22 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.21 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.21 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.21 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.21 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.2 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.2 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.2 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.19 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.19 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.19 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.19 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.19 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.18 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.18 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.18 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.17 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.17 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.17 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.17 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.16 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.16 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.16 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.15 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.15 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.15 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.15 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.15 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.14 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.14 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.14 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.14 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.13 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.13 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.13 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.13 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.13 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.13 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.12 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.12 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.12 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.12 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.12 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.12 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.11 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.11 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.11 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.11 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.11 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.11 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.11 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.11 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.11 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.11 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.1 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.1 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.1 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.09 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.09 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.09 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.09 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.08 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.08 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.08 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.08 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.08 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.07 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.07 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.06 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.06 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.06 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.06 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.06 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.06 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.06 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.05 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.05 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.05 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.04 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.04 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.04 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.04 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.03 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.03 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.03 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.03 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.03 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.02 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.02 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.02 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.01 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.01 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.01 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.01 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.01 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.01 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.0 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 99.0 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.0 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.0 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.99 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.99 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.99 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.99 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.99 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.98 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.98 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.98 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.98 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.98 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.98 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.97 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.97 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.97 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.97 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.96 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.96 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.96 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.96 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.96 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.96 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.96 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.95 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.95 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.95 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.95 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.95 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.94 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.94 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.94 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.93 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.93 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.92 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.92 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.92 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.91 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.9 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.9 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.9 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.9 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.89 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.89 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.89 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.89 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.88 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.87 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.87 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.87 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.87 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.86 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.86 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.85 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.85 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.85 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.84 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.84 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.83 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.82 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.81 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.81 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.81 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.81 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.8 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.79 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.79 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.79 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.78 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.77 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.76 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.76 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.76 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.75 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.75 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.74 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.73 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.72 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.72 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.72 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 98.72 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.7 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.69 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.69 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.69 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.68 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.68 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.68 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.67 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.62 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.62 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.61 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.59 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.58 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.58 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.57 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.56 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.55 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.53 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.53 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.52 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.5 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.48 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.47 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.45 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.44 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.43 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.42 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.41 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.39 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.33 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.33 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.32 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.32 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.23 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.23 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.22 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.22 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.22 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.19 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.19 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.11 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.09 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.06 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.05 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.03 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.03 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.03 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 97.98 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.98 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.94 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.91 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.91 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.85 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.78 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.78 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.71 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.69 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.62 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.49 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.43 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.4 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.38 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.35 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.32 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.13 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 97.01 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 96.95 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 96.9 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.85 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 96.68 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.5 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.42 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 95.63 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.52 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.3 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 95.21 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.18 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.14 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 94.89 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 93.88 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 93.59 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 93.52 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.23 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.19 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.02 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 92.82 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.63 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.46 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 91.55 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 91.54 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.48 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 91.02 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.96 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 90.89 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 90.28 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.27 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 90.06 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 90.01 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 89.82 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 89.45 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 89.42 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 89.4 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 89.39 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 89.25 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 89.12 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 88.65 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 88.38 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 88.22 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 88.18 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 88.08 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 88.06 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 87.93 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 87.87 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 87.77 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 87.66 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 87.59 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 87.51 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 87.22 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 87.04 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 86.87 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 86.75 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 86.45 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 86.43 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 85.74 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 85.18 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 84.95 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 84.89 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 84.71 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 83.98 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 83.69 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 83.46 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 83.45 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 83.28 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 82.58 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 82.37 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 82.37 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 82.19 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 82.14 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 81.93 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 81.64 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 81.59 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 81.38 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 81.37 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 80.66 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 80.51 |
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=191.47 Aligned_cols=166 Identities=16% Similarity=0.242 Sum_probs=129.5
Q ss_pred hHHHHHHHHHhhc----CCCEEEEEcCcchHHHHHHHHHhccCC-CCcEEEEEeCCCCChhhhhhhcccC----cc--cc
Q 041517 142 SYGAVFGNLIDKV----RPRVIIEVGSFLGASALHMANLTRQLG-LDSQILCIDDFRGWPGFRDKFKEIP----MV--NG 210 (327)
Q Consensus 142 ~~g~lL~~L~~~~----~p~~VLEIGt~~G~Sal~lA~a~r~l~-~~~~V~~ID~~~~~~~~A~~~~~~~----~~--~g 210 (327)
.+..+|..|++.+ .|++||||||+.|+|+++||++++..+ ++++|++||+|+++++........+ .. .+
T Consensus 89 ~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~ 168 (282)
T 2wk1_A 89 KRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNS 168 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHH
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccc
Confidence 3456777776653 499999999999999999999876554 4899999999999876443210000 00 00
Q ss_pred -chHHHHHHHHHHhhhccC-CcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 211 -NVLLYFQFLQNVIYQNAI-DSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 211 -~~~~~~~Fl~nv~~~g~~-~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.....+.+.+|+...|+. ++ |++..|++.++|+.+ +++|||||||+++ |+++..+|+.++++|+|||+|++||
T Consensus 169 ~~~~~~~~ar~n~~~~gl~~~~---I~li~Gda~etL~~~~~~~~d~vfIDaD~-y~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 169 VLAVSEEEVRRNFRNYDLLDEQ---VRFLPGWFKDTLPTAPIDTLAVLRMDGDL-YESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp HHCCCHHHHHHHHHHTTCCSTT---EEEEESCHHHHSTTCCCCCEEEEEECCCS-HHHHHHHHHHHGGGEEEEEEEEESS
T ss_pred cchhHHHHHHHHHHHcCCCcCc---eEEEEeCHHHHHhhCCCCCEEEEEEcCCc-cccHHHHHHHHHhhcCCCEEEEEcC
Confidence 001234567788888873 66 999999999999887 4799999999997 7778899999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 288 YFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 288 ~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
|.+ ++|+++||++|++.+++++..
T Consensus 245 ~~~---~~G~~~Av~Ef~~~~~i~~~i 268 (282)
T 2wk1_A 245 YMM---CPPCKDAVDEYRAKFDIADEL 268 (282)
T ss_dssp CTT---CHHHHHHHHHHHHHTTCCSCC
T ss_pred CCC---CHHHHHHHHHHHHhcCCceEE
Confidence 965 699999999999999976543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-21 Score=174.46 Aligned_cols=154 Identities=18% Similarity=0.157 Sum_probs=120.5
Q ss_pred hHHHHHHHHHhhcCCC---EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPR---VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~---~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
.++++|..|++..+++ +|||||||+|+++++||++ ++++++|++||.++.+.+.+++
T Consensus 40 ~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~----------------- 99 (221)
T 3dr5_A 40 MTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNG---LADNTTLTCIDPESEHQRQAKA----------------- 99 (221)
T ss_dssp HHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHH---SCTTSEEEEECSCHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-----------------
Confidence 6788999999888888 9999999999999999995 5678999999999999988876
Q ss_pred HHHHhhhccC-CcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC----
Q 041517 219 LQNVIYQNAI-DSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA---- 292 (327)
Q Consensus 219 l~nv~~~g~~-~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~---- 292 (327)
|+...+.. ++ |++..+++.+.++.+ +++||+||+|+.+.. ...+++.+.++|+|||+|++||+.|..
T Consensus 100 --~~~~~g~~~~~---i~~~~gda~~~l~~~~~~~fD~V~~d~~~~~--~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~ 172 (221)
T 3dr5_A 100 --LFREAGYSPSR---VRFLLSRPLDVMSRLANDSYQLVFGQVSPMD--LKALVDAAWPLLRRGGALVLADALLDGTIAD 172 (221)
T ss_dssp --HHHHTTCCGGG---EEEECSCHHHHGGGSCTTCEEEEEECCCTTT--HHHHHHHHHHHEEEEEEEEETTTTGGGTCSC
T ss_pred --HHHHcCCCcCc---EEEEEcCHHHHHHHhcCCCcCeEEEcCcHHH--HHHHHHHHHHHcCCCcEEEEeCCCCCCcCCC
Confidence 44444554 44 899999999988877 689999999998754 347899999999999999999999831
Q ss_pred -C--ch---hHHHHHHHHHHHcCCe--EEEccceEEEe
Q 041517 293 -D--NR---GVRRAVNLFAKINGLK--VQIDGQHWVIH 322 (327)
Q Consensus 293 -~--~~---GV~~Av~~f~~~~gl~--v~~~gq~w~i~ 322 (327)
. .+ ++++..+.+.+..+++ +.+.|..-.|.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~gdGl~~~ 210 (221)
T 3dr5_A 173 QTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVV 210 (221)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCTTEEEEEESSTTCEEEE
T ss_pred CCCCChHHHHHHHHHHHHhhCCCeeEEEeeccchHHHH
Confidence 1 11 2344444444444544 55667666554
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=171.39 Aligned_cols=153 Identities=21% Similarity=0.256 Sum_probs=120.9
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++++|..++...++++|||||||+|+++++||++ ++++++|++||+++.+.+.+++ |
T Consensus 47 ~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~---~~~~~~v~~iD~~~~~~~~a~~-------------------~ 104 (242)
T 3r3h_A 47 EQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLA---LPDDGQVITCDINEGWTKHAHP-------------------Y 104 (242)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHT---SCTTCEEEEEECCCSSCCCSHH-------------------H
T ss_pred HHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------H
Confidence 57889999998889999999999999999999995 5668999999999999988876 4
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC---
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD--- 293 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~--- 293 (327)
+...+..++ |++..+++.+.++.+ .++||+||+|+.+. ....+++.+.++|+|||+|++||+.|...
T Consensus 105 ~~~~g~~~~---i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~ 179 (242)
T 3r3h_A 105 WREAKQEHK---IKLRLGPALDTLHSLLNEGGEHQFDFIFIDADKT--NYLNYYELALKLVTPKGLIAIDNIFWDGKVID 179 (242)
T ss_dssp HHHTTCTTT---EEEEESCHHHHHHHHHHHHCSSCEEEEEEESCGG--GHHHHHHHHHHHEEEEEEEEEECSSSSSCSSC
T ss_pred HHHcCCCCc---EEEEEcCHHHHHHHHhhccCCCCEeEEEEcCChH--HhHHHHHHHHHhcCCCeEEEEECCccCCcccC
Confidence 444555555 899999999887765 57999999999863 45578999999999999999999998321
Q ss_pred -------chhHHHHHHHHHHHcCCe--EEEccceEEE
Q 041517 294 -------NRGVRRAVNLFAKINGLK--VQIDGQHWVI 321 (327)
Q Consensus 294 -------~~GV~~Av~~f~~~~gl~--v~~~gq~w~i 321 (327)
..+++++.+.+.+..+++ +.+.|....|
T Consensus 180 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~ 216 (242)
T 3r3h_A 180 PNDTSGQTREIKKLNQVIKNDSRVFVSLLAIADGMFL 216 (242)
T ss_dssp TTCCCHHHHHHHHHHHHHHTCCSEEEEEESSSSCEEE
T ss_pred ccccChHHHHHHHHHHHHhhCCCEEEEEEEccCceEE
Confidence 113555555555556665 4455555544
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.1e-19 Score=164.90 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=115.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhcc---CCCCcEEEEEeCCCCChhhhhhhcccC-ccccch-------HHHHHHHH---
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQ---LGLDSQILCIDDFRGWPGFRDKFKEIP-MVNGNV-------LLYFQFLQ--- 220 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~---l~~~~~V~~ID~~~~~~~~A~~~~~~~-~~~g~~-------~~~~~Fl~--- 220 (327)
-|+.|+|+||+.|.|++.+|.+... .+++.+|+++|+|+|+++...+..... ...|.. ....+.++
T Consensus 69 vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~ 148 (257)
T 3tos_A 69 VPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHE 148 (257)
T ss_dssp SCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHH
T ss_pred CCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHh
Confidence 4899999999999999998874322 246899999999999997543211100 011110 11111111
Q ss_pred HHhhhcc-CCcccceEeeecchhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCc
Q 041517 221 NVIYQNA-IDSVLPVPFSSGSALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294 (327)
Q Consensus 221 nv~~~g~-~~~v~~V~~~~gda~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~ 294 (327)
|....+. .++ |.+..|++.++|+.+ +.+|||||||+++ |.++..+++.++++|+|||+|++|||.+ +.|
T Consensus 149 ~~~~~g~~~~~---i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~-Y~~t~~~le~~~p~l~~GGvIv~DD~~~-~~w 223 (257)
T 3tos_A 149 CSDFFGHVTQR---SVLVEGDVRETVPRYLAENPQTVIALAYFDLDL-YEPTKAVLEAIRPYLTKGSIVAFDELDN-PKW 223 (257)
T ss_dssp TTSTTTTSCCS---EEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC-HHHHHHHHHHHGGGEEEEEEEEESSTTC-TTC
T ss_pred hhhhcCCCCCc---EEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc-cchHHHHHHHHHHHhCCCcEEEEcCCCC-CCC
Confidence 1112232 244 999999999999874 3579999999997 8888999999999999999999999976 678
Q ss_pred hhHHHHHHHHHHHcCCeEEE
Q 041517 295 RGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 295 ~GV~~Av~~f~~~~gl~v~~ 314 (327)
+|+++||++|+..++++++.
T Consensus 224 ~G~~~A~~ef~~~~~~~i~~ 243 (257)
T 3tos_A 224 PGENIAMRKVLGLDHAPLRL 243 (257)
T ss_dssp THHHHHHHHHTCTTSSCCEE
T ss_pred hHHHHHHHHHHhhCCCeEEE
Confidence 99999999999999988764
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=160.17 Aligned_cols=122 Identities=23% Similarity=0.229 Sum_probs=103.9
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++++|..+++..++++|||||||+|++++++|+. ++++++|++||.++.+.+.++++
T Consensus 66 ~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~---~~~~~~v~~iD~s~~~~~~a~~~------------------- 123 (247)
T 1sui_A 66 DEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALA---IPEDGKILAMDINKENYELGLPV------------------- 123 (247)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHH---SCTTCEEEEEESCCHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHH-------------------
Confidence 56789999988888999999999999999999996 56689999999999999888763
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc------CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW------GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l------~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...++.++ |++..+++.+.++.+ .++||+||+|+++.. ...+++.+.++|+|||+|++||+.|
T Consensus 124 ~~~~g~~~~---i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~~~--~~~~l~~~~~~LkpGG~lv~d~~~~ 193 (247)
T 1sui_A 124 IKKAGVDHK---IDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDN--YLNYHKRLIDLVKVGGVIGYDNTLW 193 (247)
T ss_dssp HHHTTCGGG---EEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCSTT--HHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred HHHcCCCCC---eEEEECCHHHHHHHHHhccCCCCCEEEEEEcCchHH--HHHHHHHHHHhCCCCeEEEEecCCc
Confidence 333444444 899999998877765 578999999998644 4589999999999999999999987
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=158.81 Aligned_cols=153 Identities=19% Similarity=0.122 Sum_probs=117.7
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++++|..+++..++++|||||||+|++++++|+. ++++++|++||.++.+.+.+++ |
T Consensus 57 ~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~---~~~~~~v~~iD~~~~~~~~a~~-------------------~ 114 (237)
T 3c3y_A 57 LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALS---IPDDGKITAIDFDREAYEIGLP-------------------F 114 (237)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHH---SCTTCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------H
Confidence 56789999988888999999999999999999996 5668999999999999988876 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc------CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC--
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW------GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD-- 293 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l------~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-- 293 (327)
+...|..++ |++..+++.+.++.+ .++||+||+|+++.. ...+++.+.++|+|||+|++||+.|...
T Consensus 115 ~~~~g~~~~---i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~~--~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~ 189 (237)
T 3c3y_A 115 IRKAGVEHK---INFIESDAMLALDNLLQGQESEGSYDFGFVDADKPN--YIKYHERLMKLVKVGGIVAYDNTLWGGTVA 189 (237)
T ss_dssp HHHTTCGGG---EEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGGG--HHHHHHHHHHHEEEEEEEEEECTTGGGGGG
T ss_pred HHHcCCCCc---EEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchHH--HHHHHHHHHHhcCCCeEEEEecCCcCCccC
Confidence 334454444 899999999887765 578999999988743 4588999999999999999999887311
Q ss_pred -------------chhHHHHHHHHHHHcCCe--EEEccceEEE
Q 041517 294 -------------NRGVRRAVNLFAKINGLK--VQIDGQHWVI 321 (327)
Q Consensus 294 -------------~~GV~~Av~~f~~~~gl~--v~~~gq~w~i 321 (327)
...++++.+.+....++. +.+.|....|
T Consensus 190 ~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~lp~~dG~~~ 232 (237)
T 3c3y_A 190 QPESEVPDFMKENREAVIELNKLLAADPRIEIVHLPLGDGITF 232 (237)
T ss_dssp SCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEE
T ss_pred CCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCceEE
Confidence 112334555555556654 4455555544
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.9e-19 Score=158.39 Aligned_cols=194 Identities=21% Similarity=0.283 Sum_probs=136.2
Q ss_pred CCCCcCCCccccccccCcCCCChHHHHHHHHHhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcCCCEEE
Q 041517 81 LPPSLLDNFRVTTRCAADSVPPQLVRQTIIDRIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVRPRVII 160 (327)
Q Consensus 81 ~~~~~~d~~~~~~~~~~~~~~~~~v~~~~l~~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~p~~VL 160 (327)
+.|..+++|. .. ...+.+.+.+.+.+.... .+.|...+. ..++++|..++...++.+||
T Consensus 5 ~~~~~~~~y~----~~-~~~~~~~~l~~~~~~~~~-----~~~~~~~~~-----------~~~~~~l~~l~~~~~~~~vL 63 (223)
T 3duw_A 5 ETWTAVDQYV----SD-VLIPKDSTLEEVLQVNAA-----ANLPAHDVS-----------PTQGKFLQLLVQIQGARNIL 63 (223)
T ss_dssp HHHHHHHHHH----HH-HHSCCCHHHHHHHHHHHH-----TTCCSCSCC-----------HHHHHHHHHHHHHHTCSEEE
T ss_pred ccHHHHHHHH----HH-hCCCCCHHHHHHHHHHhh-----CCCCCcccC-----------HHHHHHHHHHHHhhCCCEEE
Confidence 4577778887 33 444555565555543221 122222111 25677889888888899999
Q ss_pred EEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecc
Q 041517 161 EVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGS 240 (327)
Q Consensus 161 EIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gd 240 (327)
|||||+|++++++|+. ++++++|+++|.++.+.+.+++ |+...+..++ +.+..++
T Consensus 64 diG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~-------------------~~~~~~~~~~---v~~~~~d 118 (223)
T 3duw_A 64 EIGTLGGYSTIWLARG---LSSGGRVVTLEASEKHADIARS-------------------NIERANLNDR---VEVRTGL 118 (223)
T ss_dssp EECCTTSHHHHHHHTT---CCSSCEEEEEESCHHHHHHHHH-------------------HHHHTTCTTT---EEEEESC
T ss_pred EecCCccHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---EEEEEcC
Confidence 9999999999999985 5557899999999998887766 4444455445 8899999
Q ss_pred hhhhhhhcC----CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC----------chhHHHHHHHHHH
Q 041517 241 ALTKLCEWG----VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD----------NRGVRRAVNLFAK 306 (327)
Q Consensus 241 a~~~L~~l~----~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~----------~~GV~~Av~~f~~ 306 (327)
+.+.++.+. .+||+||+|+.+. .....++.+.++|+|||+|+++|+.+... ..++++..+.+..
T Consensus 119 ~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 196 (223)
T 3duw_A 119 ALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAA 196 (223)
T ss_dssp HHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhh
Confidence 988766542 6799999999864 34588999999999999999999998311 1235666666666
Q ss_pred HcCCe--EEEc-----cceEEEe
Q 041517 307 INGLK--VQID-----GQHWVIH 322 (327)
Q Consensus 307 ~~gl~--v~~~-----gq~w~i~ 322 (327)
..++. +.+. |..+.|-
T Consensus 197 ~~~~~~~~~p~~~~~~~dG~~~~ 219 (223)
T 3duw_A 197 EPRVSATALQTVGSKGYDGFIMA 219 (223)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEE
T ss_pred CCCeEEEEEeccCCCCCCeeEEE
Confidence 55554 4455 5555543
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=157.73 Aligned_cols=144 Identities=26% Similarity=0.348 Sum_probs=114.2
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+++|..++...++.+|||||||+|++++++|+. ++++++|++||+++.+.+.+++ +
T Consensus 50 ~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~---~~~~~~v~~vD~s~~~~~~a~~-------------------~ 107 (248)
T 3tfw_A 50 NQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARE---LPADGQLLTLEADAHHAQVARE-------------------N 107 (248)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTT---SCTTCEEEEEECCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------H
Confidence 46788898888888999999999999999999985 5568999999999999888776 4
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCC--cEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC-----C-
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGV--VGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA-----D- 293 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~--~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~-----~- 293 (327)
+...+..++ |++..+++.+.++.+.. +||+||+|+... ....+++.+.++|+|||+|+++|+.+.. .
T Consensus 108 ~~~~g~~~~---v~~~~~d~~~~l~~~~~~~~fD~V~~d~~~~--~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~ 182 (248)
T 3tfw_A 108 LQLAGVDQR---VTLREGPALQSLESLGECPAFDLIFIDADKP--NNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQS 182 (248)
T ss_dssp HHHTTCTTT---EEEEESCHHHHHHTCCSCCCCSEEEECSCGG--GHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTC
T ss_pred HHHcCCCCc---EEEEEcCHHHHHHhcCCCCCeEEEEECCchH--HHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccc
Confidence 444455445 89999999988777644 999999999764 3457899999999999999999999831 1
Q ss_pred ----chhHHHHHHHHHHHcCCeE
Q 041517 294 ----NRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 294 ----~~GV~~Av~~f~~~~gl~v 312 (327)
..++++..+.+....++..
T Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~ 205 (248)
T 3tfw_A 183 ADERVQGVRQFIEMMGAEPRLTA 205 (248)
T ss_dssp CCHHHHHHHHHHHHHHHCTTEEE
T ss_pred cchHHHHHHHHHHHHhhCCCEEE
Confidence 1245566666666666653
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-18 Score=151.92 Aligned_cols=140 Identities=17% Similarity=0.297 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+++|..++...++.+|||||||+|++++++|+. ++++++|++||.++.+.+.+++ |
T Consensus 45 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~-------------------~ 102 (221)
T 3u81_A 45 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARL---LQPGARLLTMEINPDCAAITQQ-------------------M 102 (221)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTT---SCTTCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh---CCCCCEEEEEeCChHHHHHHHH-------------------H
Confidence 56789999988888999999999999999999985 5568999999999999988876 4
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcC-----CcEeEEEEcCCCCCC-cHHHHHHHHHccCCCCeEEEEEcCCCCCCch
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWG-----VVGDLIEIDAGHDFN-SAWADINRAWRILRPGGVIFGHDYFTAADNR 295 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~-----~~fDLIfIDa~h~~~-~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~ 295 (327)
+...++.++ |++..+++.+.++.+. ++||+||+|+.+... .....++.+ ++|+|||+|+++|+.+ +
T Consensus 103 ~~~~~~~~~---v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~----~ 174 (221)
T 3u81_A 103 LNFAGLQDK---VTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV----P 174 (221)
T ss_dssp HHHHTCGGG---EEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC----C
T ss_pred HHHcCCCCc---eEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC----c
Confidence 444455445 8999999988877765 689999999976443 223345555 9999999999999997 4
Q ss_pred hHHHHHHHHHHHcCCe
Q 041517 296 GVRRAVNLFAKINGLK 311 (327)
Q Consensus 296 GV~~Av~~f~~~~gl~ 311 (327)
|.+++++.+.+..+++
T Consensus 175 ~~~~~~~~l~~~~~~~ 190 (221)
T 3u81_A 175 GTPDFLAYVRGSSSFE 190 (221)
T ss_dssp CCHHHHHHHHHCTTEE
T ss_pred chHHHHHHHhhCCCce
Confidence 5566666665555554
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-18 Score=153.23 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=98.7
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++++|+..+ .++++|||||| |+||+|||++ . +++|++||.++++.+.+++ |
T Consensus 19 ~~~~~L~~~l--~~a~~VLEiGt--GySTl~lA~~----~-~g~VvtvE~d~~~~~~ar~-------------------~ 70 (202)
T 3cvo_A 19 AEAEALRMAY--EEAEVILEYGS--GGSTVVAAEL----P-GKHVTSVESDRAWARMMKA-------------------W 70 (202)
T ss_dssp HHHHHHHHHH--HHCSEEEEESC--SHHHHHHHTS----T-TCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHh--hCCCEEEEECc--hHHHHHHHHc----C-CCEEEEEeCCHHHHHHHHH-------------------H
Confidence 6788888744 46899999998 7999999983 3 7999999999999988876 4
Q ss_pred Hhhhcc--CCcccceEeeecchhhh--------------hhh-------cC--CcEeEEEEcCCCCCCcHHHHHHHHHcc
Q 041517 222 VIYQNA--IDSVLPVPFSSGSALTK--------------LCE-------WG--VVGDLIEIDAGHDFNSAWADINRAWRI 276 (327)
Q Consensus 222 v~~~g~--~~~v~~V~~~~gda~~~--------------L~~-------l~--~~fDLIfIDa~h~~~~v~~dl~~~~~l 276 (327)
+...|. .++ |.+..|++.+. ++. ++ ++||||||||++.. .++..++++
T Consensus 71 l~~~g~~~~~~---I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~~----~~~~~~l~~ 143 (202)
T 3cvo_A 71 LAANPPAEGTE---VNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFRV----GCALATAFS 143 (202)
T ss_dssp HHHSCCCTTCE---EEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSHH----HHHHHHHHH
T ss_pred HHHcCCCCCCc---eEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCch----hHHHHHHHh
Confidence 444555 455 78888875543 221 23 78999999998742 678888999
Q ss_pred CCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 277 LRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 277 L~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
|+|||+|++||+.+.+.+..+.+.+..
T Consensus 144 l~~GG~Iv~DNv~~r~~y~~v~~~~~~ 170 (202)
T 3cvo_A 144 ITRPVTLLFDDYSQRRWQHQVEEFLGA 170 (202)
T ss_dssp CSSCEEEEETTGGGCSSGGGGHHHHCC
T ss_pred cCCCeEEEEeCCcCCcchHHHHHHHhH
Confidence 999999999998765777777666553
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-18 Score=153.94 Aligned_cols=123 Identities=26% Similarity=0.290 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++++|..+++..++++|||||||+|++++++++. ++++++|+++|.++.+.+.++++
T Consensus 59 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~iD~~~~~~~~a~~~------------------- 116 (232)
T 3cbg_A 59 EQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQ---LPPDGQIIACDQDPNATAIAKKY------------------- 116 (232)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTT---SCTTCEEEEEESCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHH-------------------
Confidence 56788898888888999999999999999999985 55578999999999998888763
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc---C--CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW---G--VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l---~--~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
+...+..++ +.+..+++.+.++.+ + ++||+||+|+.. ......++.+.++|+|||+|+++|+.|.
T Consensus 117 ~~~~g~~~~---i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 117 WQKAGVAEK---ISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp HHHHTCGGG---EEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred HHHcCCCCc---EEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 333344334 888999988876654 2 789999999885 3455889999999999999999999983
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=148.47 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=117.1
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.+++++..++...++.+|||||||+|++++++++. ++++++|+++|+++.+.+.+++ +
T Consensus 51 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~-------------------~ 108 (225)
T 3tr6_A 51 EQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLA---LPKDGTLITCDVDEKSTALAKE-------------------Y 108 (225)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTT---CCTTCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHh---CCCCCEEEEEeCCHHHHHHHHH-------------------H
Confidence 56788998888888999999999999999999984 5568999999999999888776 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcC-----CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCc--
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWG-----VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN-- 294 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~-----~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~-- 294 (327)
+...+..++ +.+..+++.+.++.+. ++||+||+|+.. ......++.+.++|+|||+|+++|+.+....
T Consensus 109 ~~~~~~~~~---v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~ 183 (225)
T 3tr6_A 109 WEKAGLSDK---IGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEESLKLLREGGLIAVDNVLRRGQVAD 183 (225)
T ss_dssp HHHTTCTTT---EEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGC
T ss_pred HHHCCCCCc---eEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccC
Confidence 444455444 8899999988776653 789999999875 3355789999999999999999999983211
Q ss_pred --------hhHHHHHHHHHHHcCCe--EEEccceEEEe
Q 041517 295 --------RGVRRAVNLFAKINGLK--VQIDGQHWVIH 322 (327)
Q Consensus 295 --------~GV~~Av~~f~~~~gl~--v~~~gq~w~i~ 322 (327)
..+++..+.+....++. +.+.|..+.|-
T Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dG~~~~ 221 (225)
T 3tr6_A 184 EENQSENNQLIRLFNQKVYKDERVDMILIPIGDGLTLA 221 (225)
T ss_dssp TTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEEE
T ss_pred ccccChHHHHHHHHHHHHhcCCCeEEEEEEcCCccEEE
Confidence 12444454554544543 45666666553
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=147.77 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..++++..+++..++.+|||||||+|++++++|+. .++++|++||+++.+.+.+++ +
T Consensus 58 ~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~~~~~~~~a~~-------------------~ 114 (232)
T 3ntv_A 58 LTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASI----SDDIHVTTIERNETMIQYAKQ-------------------N 114 (232)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTT----CTTCEEEEEECCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHH-------------------H
Confidence 45678888888888999999999999999999984 348999999999999988876 3
Q ss_pred HhhhccCCcccceEeeecchhhhhh-hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLC-EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~-~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...++.++ +.+..+++.+.++ .++++||+||+|+.... ....++.+.++|+|||+|++||+.|
T Consensus 115 ~~~~~~~~~---v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~--~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 115 LATYHFENQ---VRIIEGNALEQFENVNDKVYDMIFIDAAKAQ--SKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp HHHTTCTTT---EEEEESCGGGCHHHHTTSCEEEEEEETTSSS--HHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred HHHcCCCCc---EEEEECCHHHHHHhhccCCccEEEEcCcHHH--HHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 444454444 8999999988877 66789999999987643 4588999999999999999999998
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.9e-17 Score=144.12 Aligned_cols=153 Identities=20% Similarity=0.199 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++++|..+++..++++|||||||+|++++++++. ++++++|+++|.++.+.+.+++ +
T Consensus 56 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~-------------------~ 113 (229)
T 2avd_A 56 EQAQLLANLARLIQAKKALDLGTFTGYSALALALA---LPADGRVVTCEVDAQPPELGRP-------------------L 113 (229)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTT---SCTTCEEEEEESCSHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------H
Confidence 56788888888888999999999999999999985 4557899999999999888876 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcC-----CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCc--
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWG-----VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN-- 294 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~-----~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~-- 294 (327)
+...+..++ +++..+++.+.++.+. ++||+||+|+... .....++.+.++|+|||+|+++|+.|....
T Consensus 114 ~~~~g~~~~---i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~~~--~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~ 188 (229)
T 2avd_A 114 WRQAEAEHK---IDLRLKPALETLDELLAAGEAGTFDVAVVDADKE--NCSAYYERCLQLLRPGGILAVLRVLWRGKVLQ 188 (229)
T ss_dssp HHHTTCTTT---EEEEESCHHHHHHHHHHTTCTTCEEEEEECSCST--THHHHHHHHHHHEEEEEEEEEECCSGGGGGGS
T ss_pred HHHCCCCCe---EEEEEcCHHHHHHHHHhcCCCCCccEEEECCCHH--HHHHHHHHHHHHcCCCeEEEEECCCcCCcccC
Confidence 333444444 8899999888765542 6899999998753 345889999999999999999999873211
Q ss_pred --------hhHHHHHHHHHHHcCCe--EEEccceEEE
Q 041517 295 --------RGVRRAVNLFAKINGLK--VQIDGQHWVI 321 (327)
Q Consensus 295 --------~GV~~Av~~f~~~~gl~--v~~~gq~w~i 321 (327)
..+++..+.+....+++ +.+.|....|
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~dGl~~ 225 (229)
T 2avd_A 189 PPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLTL 225 (229)
T ss_dssp CCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEE
T ss_pred cccCChHHHHHHHHHHHHhhCCCEEEEEEecCCceEE
Confidence 13455555555555554 4455665554
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.4e-17 Score=143.10 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++.++..++...++++|||||||+|++++++++. ++++++|+++|+++.+.+.++++
T Consensus 43 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~------------------- 100 (210)
T 3c3p_A 43 QTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARA---ISISSRVVMIDPDRDNVEHARRM------------------- 100 (210)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTT---SCTTCEEEEEESCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHH-------------------
Confidence 45678888887778999999999999999999985 45579999999999998888763
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
+...+..++ +++..+++.+.++.+++ ||+||+|+... .....++.+.++|+|||+|+++|+.|.
T Consensus 101 ~~~~~~~~~---v~~~~~d~~~~~~~~~~-fD~v~~~~~~~--~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 101 LHDNGLIDR---VELQVGDPLGIAAGQRD-IDILFMDCDVF--NGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp HHHHSGGGG---EEEEESCHHHHHTTCCS-EEEEEEETTTS--CHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred HHHCCCCce---EEEEEecHHHHhccCCC-CCEEEEcCChh--hhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 333343334 88999999887776667 99999998764 345889999999999999999999873
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-15 Score=135.20 Aligned_cols=153 Identities=24% Similarity=0.319 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++.+|..++...++.+|||||||+|++++.+++. ++++++|+++|.++.+.+.++++
T Consensus 47 ~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~---~~~~~~v~~vD~~~~~~~~a~~~------------------- 104 (239)
T 2hnk_A 47 EEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASA---LPEDGKILCCDVSEEWTNVARKY------------------- 104 (239)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHH---SCTTCEEEEEESCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHH-------------------
Confidence 55678888887778999999999999999999985 45578999999999988877763
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc---------------C-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW---------------G-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l---------------~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+...+..++ +.+..+++.+.++.+ + ++||+|++|+.. ......++.+.++|+|||+|++
T Consensus 105 ~~~~g~~~~---v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~--~~~~~~l~~~~~~L~pgG~lv~ 179 (239)
T 2hnk_A 105 WKENGLENK---IFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK--ENYPNYYPLILKLLKPGGLLIA 179 (239)
T ss_dssp HHHTTCGGG---EEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG--GGHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHcCCCCC---EEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH--HHHHHHHHHHHHHcCCCeEEEE
Confidence 333343333 888889888766543 2 789999999765 3445889999999999999999
Q ss_pred EcCCCCCC------ch----hHHHHHHHHHHHcCCe--EEEccceEEE
Q 041517 286 HDYFTAAD------NR----GVRRAVNLFAKINGLK--VQIDGQHWVI 321 (327)
Q Consensus 286 dD~~~~~~------~~----GV~~Av~~f~~~~gl~--v~~~gq~w~i 321 (327)
+++.|... .. .+++..+.+....++. +.+.+....+
T Consensus 180 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~ 227 (239)
T 2hnk_A 180 DNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADGVSL 227 (239)
T ss_dssp ECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEEE
T ss_pred EccccCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEEEcCCceEe
Confidence 99887321 11 2344444555555555 4455555443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.8e-15 Score=133.87 Aligned_cols=136 Identities=20% Similarity=0.289 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
+...++..++...++.+|||||||+|+++++||+.++.++++++|++||+++++.+.++..
T Consensus 68 ~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~------------------- 128 (236)
T 2bm8_A 68 DTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD------------------- 128 (236)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-------------------
T ss_pred HHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc-------------------
Confidence 3456677777777889999999999999999998644346789999999999998766420
Q ss_pred HhhhccCCcccceEeeecchhhh--hhhcC-CcEeEEEEcCCCCCCcHHHHHHHHHc-cCCCCeEEEEEcCCCCCCchh-
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTK--LCEWG-VVGDLIEIDAGHDFNSAWADINRAWR-ILRPGGVIFGHDYFTAADNRG- 296 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~--L~~l~-~~fDLIfIDa~h~~~~v~~dl~~~~~-lL~pGGvIi~dD~~~~~~~~G- 296 (327)
..+ |++..+++.+. ++... .+||+|++|+.|. .....++++.+ +|+|||+++++|+. +.+++
T Consensus 129 ------~~~---v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~~--~~~~~l~~~~r~~LkpGG~lv~~d~~--~~~~~~ 195 (236)
T 2bm8_A 129 ------MEN---ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHA--NTFNIMKWAVDHLLEEGDYFIIEDMI--PYWYRY 195 (236)
T ss_dssp ------CTT---EEEEECCSSCSGGGGGGSSSCSSEEEEESSCS--SHHHHHHHHHHHTCCTTCEEEECSCH--HHHHHH
T ss_pred ------CCc---eEEEECcchhHHHHHhhccCCCCEEEECCchH--hHHHHHHHHHHhhCCCCCEEEEEeCc--cccccc
Confidence 112 78888887764 44443 3799999999985 45678999996 99999999999872 22222
Q ss_pred HHHHHHHHHHHcC
Q 041517 297 VRRAVNLFAKING 309 (327)
Q Consensus 297 V~~Av~~f~~~~g 309 (327)
-.+.+.++.+..+
T Consensus 196 ~~~~~~~~l~~~~ 208 (236)
T 2bm8_A 196 APQLFSEYLGAFR 208 (236)
T ss_dssp CHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhCc
Confidence 1236777777663
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=128.73 Aligned_cols=122 Identities=22% Similarity=0.217 Sum_probs=98.2
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+.++..++...++.+|||||||+|++++.+++. + ++++|+++|.++.+.+.+++ +
T Consensus 41 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~---~-~~~~v~~vD~~~~~~~~a~~-------------------~ 97 (233)
T 2gpy_A 41 LGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQA---L-PEATIVSIERDERRYEEAHK-------------------H 97 (233)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHH---C-TTCEEEEECCCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHH---C-CCCEEEEEECCHHHHHHHHH-------------------H
Confidence 44567777777778899999999999999999995 3 37899999999998887766 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
+...+..++ +.+..+++.+.++.. +++||+|++|+... .....++.+.++|+|||+++++|+.+.
T Consensus 98 ~~~~~~~~~---v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~--~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 98 VKALGLESR---IELLFGDALQLGEKLELYPLFDVLFIDAAKG--QYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp HHHTTCTTT---EEEECSCGGGSHHHHTTSCCEEEEEEEGGGS--CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred HHHcCCCCc---EEEEECCHHHHHHhcccCCCccEEEECCCHH--HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 333344334 888889888866665 57899999998753 455889999999999999999999873
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=111.87 Aligned_cols=126 Identities=10% Similarity=-0.008 Sum_probs=85.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+|+. +++|+++|.++.+.+.+++ ++...+. ++ +
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~------~~~v~~vD~s~~~l~~a~~-------------------~~~~~~~-~~---v 72 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL------SKKVYAFDVQEQALGKTSQ-------------------RLSDLGI-EN---T 72 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHH-------------------HHHHHTC-CC---E
T ss_pred CCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHHHHHH-------------------HHHHcCC-Cc---E
Confidence 3579999999999999999973 7899999999999988876 3333333 23 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEc-CCCCC---------CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEID-AGHDF---------NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfID-a~h~~---------~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
.+..++..+.....+++||+|+.+ +.... ......++.+.+.|+|||++++..+...+....-.+.+.++
T Consensus 73 ~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 152 (185)
T 3mti_A 73 ELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEY 152 (185)
T ss_dssp EEEESCGGGGGGTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHH
T ss_pred EEEeCcHHHHHhhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHH
Confidence 777766554322336789999988 22211 23346689999999999999988775433223345666667
Q ss_pred HHHcC
Q 041517 305 AKING 309 (327)
Q Consensus 305 ~~~~g 309 (327)
+....
T Consensus 153 ~~~l~ 157 (185)
T 3mti_A 153 VIGLD 157 (185)
T ss_dssp HHHSC
T ss_pred HHhCC
Confidence 66543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-12 Score=109.92 Aligned_cols=126 Identities=18% Similarity=0.132 Sum_probs=94.8
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+..+|||||||+|..++.+++. ++..+|+++|.++.+.+.+++ |+...+. ++
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~-------------------~~~~~~~-~~-- 91 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNL----MPNGRIFALERNPQYLGFIRD-------------------NLKKFVA-RN-- 91 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHH----CTTSEEEEEECCHHHHHHHHH-------------------HHHHHTC-TT--
T ss_pred CCCCCEEEEECCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHhCC-Cc--
Confidence 345679999999999999999985 457999999999999888776 3333333 23
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
+.+..++..+.+... ..||+|+++.... .....++.+.+.|+|||++++.+... .-...+..+++..|+.+
T Consensus 92 -v~~~~~d~~~~~~~~-~~~D~i~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~~~-----~~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 92 -VTLVEAFAPEGLDDL-PDPDRVFIGGSGG--MLEEIIDAVDRRLKSEGVIVLNAVTL-----DTLTKAVEFLEDHGYMV 162 (204)
T ss_dssp -EEEEECCTTTTCTTS-CCCSEEEESCCTT--CHHHHHHHHHHHCCTTCEEEEEECBH-----HHHHHHHHHHHHTTCEE
T ss_pred -EEEEeCChhhhhhcC-CCCCEEEECCCCc--CHHHHHHHHHHhcCCCeEEEEEeccc-----ccHHHHHHHHHHCCCce
Confidence 888888887655443 6799999998653 45688999999999999999977654 22344555566777654
Q ss_pred E
Q 041517 313 Q 313 (327)
Q Consensus 313 ~ 313 (327)
.
T Consensus 163 ~ 163 (204)
T 3e05_A 163 E 163 (204)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.9e-12 Score=107.48 Aligned_cols=124 Identities=15% Similarity=0.120 Sum_probs=90.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.+++. .++.+++++|+++.+.+.+++ ++...+..++ +
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~----~~~~~v~~vD~~~~~~~~a~~-------------------~~~~~~~~~~---~ 78 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRS----TPQTTAVCFEISEERRERILS-------------------NAINLGVSDR---I 78 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTT----SSSEEEEEECSCHHHHHHHHH-------------------HHHTTTCTTS---E
T ss_pred CCCeEEEeCCCCCHHHHHHHHH----CCCCeEEEEeCCHHHHHHHHH-------------------HHHHhCCCCC---E
Confidence 4569999999999999999984 247899999999998888766 3333344334 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+..++..+.++...+.||+|+++....+ ...++.+.+.|+|||++++.+... +.. ..+..+.+..+.++.
T Consensus 79 -~~~~d~~~~~~~~~~~~D~i~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~----~~~-~~~~~~~~~~~~~~~ 148 (178)
T 3hm2_A 79 -AVQQGAPRAFDDVPDNPDVIFIGGGLTA---PGVFAAAWKRLPVGGRLVANAVTV----ESE-QMLWALRKQFGGTIS 148 (178)
T ss_dssp -EEECCTTGGGGGCCSCCSEEEECC-TTC---TTHHHHHHHTCCTTCEEEEEECSH----HHH-HHHHHHHHHHCCEEE
T ss_pred -EEecchHhhhhccCCCCCEEEECCcccH---HHHHHHHHHhcCCCCEEEEEeecc----ccH-HHHHHHHHHcCCeeE
Confidence 6667777766665578999999876544 368899999999999999988764 233 334444555565543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.7e-12 Score=110.22 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=92.0
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+..+|||||||+|..++.+|+. +.+|++||.++.+.+.+++ |+...+..++
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~-------------------~~~~~g~~~~-- 105 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA------GGRAITIEPRADRIENIQK-------------------NIDTYGLSPR-- 105 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHH-------------------HHHHTTCTTT--
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHH-------------------HHHHcCCCCC--
Confidence 334679999999999999999983 7899999999999988876 3433444434
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
+.+..+++.+.++.. ..||+|++++.. ... .++.+.+.|+|||++++..+.. ... ..+.++.+..|+++
T Consensus 106 -v~~~~~d~~~~~~~~-~~~D~v~~~~~~---~~~-~l~~~~~~LkpgG~lv~~~~~~----~~~-~~~~~~l~~~g~~i 174 (204)
T 3njr_A 106 -MRAVQGTAPAALADL-PLPEAVFIGGGG---SQA-LYDRLWEWLAPGTRIVANAVTL----ESE-TLLTQLHARHGGQL 174 (204)
T ss_dssp -EEEEESCTTGGGTTS-CCCSEEEECSCC---CHH-HHHHHHHHSCTTCEEEEEECSH----HHH-HHHHHHHHHHCSEE
T ss_pred -EEEEeCchhhhcccC-CCCCEEEECCcc---cHH-HHHHHHHhcCCCcEEEEEecCc----ccH-HHHHHHHHhCCCcE
Confidence 888899988865543 579999999854 233 8899999999999999987764 233 33344445566665
Q ss_pred E
Q 041517 313 Q 313 (327)
Q Consensus 313 ~ 313 (327)
.
T Consensus 175 ~ 175 (204)
T 3njr_A 175 L 175 (204)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8e-13 Score=119.82 Aligned_cols=122 Identities=18% Similarity=0.067 Sum_probs=88.5
Q ss_pred ccCCchHHHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 137 IKGWGSYGAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 137 ~~gw~~~g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
+..|. ..+++.+++.. +.++|||||||+|.++.++++. . ..++++||+++++.+.|++...
T Consensus 42 m~~we--~~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~----~-~~~v~~id~~~~~~~~a~~~~~---------- 104 (236)
T 3orh_A 42 MERWE--TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEA----P-IDEHWIIECNDGVFQRLRDWAP---------- 104 (236)
T ss_dssp EEGGG--HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTS----C-EEEEEEEECCHHHHHHHHHHGG----------
T ss_pred HHHHH--HHHHHHHHHhhccCCCeEEEECCCccHHHHHHHHh----C-CcEEEEEeCCHHHHHHHHHHHh----------
Confidence 45672 23555555433 4579999999999999999873 2 4689999999999988876431
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCC------CCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHD------FNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~------~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
..+. .+++..+++.+.+..+ +++||.|+.|.... .......++++.++|||||++++.+
T Consensus 105 ---------~~~~-----~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 105 ---------RQTH-----KVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp ---------GCSS-----EEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ---------hCCC-----ceEEEeehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 1121 2778888888876554 47899999996532 2234567889999999999999977
Q ss_pred CC
Q 041517 288 YF 289 (327)
Q Consensus 288 ~~ 289 (327)
..
T Consensus 171 ~~ 172 (236)
T 3orh_A 171 LT 172 (236)
T ss_dssp HH
T ss_pred cC
Confidence 43
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.3e-12 Score=108.63 Aligned_cols=117 Identities=13% Similarity=0.072 Sum_probs=88.4
Q ss_pred HHHHHHhh--cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDK--VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~--~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
++..+... .+..+|||+|||+|..++.+++. ...+|+++|.++.+.+.+++ |+.
T Consensus 33 l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-----~~~~v~~vD~~~~~~~~a~~-------------------~~~ 88 (189)
T 3p9n_A 33 LFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-----GAASVLFVESDQRSAAVIAR-------------------NIE 88 (189)
T ss_dssp HHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-----TCSEEEEEECCHHHHHHHHH-------------------HHH
T ss_pred HHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-----CCCeEEEEECCHHHHHHHHH-------------------HHH
Confidence 44444433 46789999999999999987762 25689999999999988876 333
Q ss_pred hhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCC--CcHHHHHHHHHc--cCCCCeEEEEEcCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDF--NSAWADINRAWR--ILRPGGVIFGHDYFT 290 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~--~~v~~dl~~~~~--lL~pGGvIi~dD~~~ 290 (327)
..+. ++ +.+..+|+.+.+..+ +++||+|++|..... +.....++.+.+ +|+|||++++.....
T Consensus 89 ~~~~-~~---v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 89 ALGL-SG---ATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp HHTC-SC---EEEEESCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred HcCC-Cc---eEEEEccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 3343 23 889999998876554 589999999976433 345567888888 999999999977654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=118.71 Aligned_cols=126 Identities=15% Similarity=0.070 Sum_probs=94.6
Q ss_pred HHHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
+++..|.+..+ .++|||||||+|..+..|++. ..+|++||+++.|.+.|++..
T Consensus 28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~------~~~v~gvD~s~~ml~~a~~~~-------------------- 81 (257)
T 4hg2_A 28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEF------FERVHAVDPGEAQIRQALRHP-------------------- 81 (257)
T ss_dssp HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT------CSEEEEEESCHHHHHTCCCCT--------------------
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh------CCEEEEEeCcHHhhhhhhhcC--------------------
Confidence 35566655543 478999999999999999874 579999999998887654311
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
+ |.+..+++.+ ++..+++||+|+.-....+-+....+.++.++|||||++++-++......+.+.+.++.
T Consensus 82 ------~---v~~~~~~~e~-~~~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~~~~~~~~~~~~~~~~~ 151 (257)
T 4hg2_A 82 ------R---VTYAVAPAED-TGLPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVTYGLTRVDPEVDAVVDR 151 (257)
T ss_dssp ------T---EEEEECCTTC-CCCCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEEECCCBCCHHHHHHHHH
T ss_pred ------C---ceeehhhhhh-hcccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEECCCCCCCHHHHHHHHH
Confidence 1 7777777655 34446899999986543344566789999999999999999888775555677777777
Q ss_pred HHH
Q 041517 304 FAK 306 (327)
Q Consensus 304 f~~ 306 (327)
+..
T Consensus 152 ~~~ 154 (257)
T 4hg2_A 152 LYH 154 (257)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-12 Score=108.19 Aligned_cols=118 Identities=14% Similarity=0.028 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+.+..+..+|||+|||+|..++.+++. ...+|+++|+++.+.+.+++ |+...
T Consensus 22 ~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-----~~~~v~~vD~~~~~~~~a~~-------------------~~~~~ 77 (177)
T 2esr_A 22 IFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-----GMSAAVLVEKNRKAQAIIQD-------------------NIIMT 77 (177)
T ss_dssp HHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-----TCCEEEEECCCHHHHHHHHH-------------------HHHTT
T ss_pred HHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-----CCCEEEEEECCHHHHHHHHH-------------------HHHHc
Confidence 4444432345789999999999999999873 25799999999999888776 33333
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHH--ccCCCCeEEEEEcCCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAW--RILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~--~lL~pGGvIi~dD~~~ 290 (327)
++.++ +.+..++..+.++.....||+|++|...........++.+. ++|+|||++++.....
T Consensus 78 ~~~~~---~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 78 KAENR---FTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp TCGGG---EEEECSCHHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCc---eEEEECcHHHhHHhhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 33333 88889998887666667899999986531122334566665 9999999999876654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.5e-12 Score=119.25 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=85.1
Q ss_pred HHhhcCCCEEEEEcCcchH-HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 150 LIDKVRPRVIIEVGSFLGA-SALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~-Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
+++..++.+|||||||+|. +++.+|+. ++++|++||+++++.+.|++ ++...|.
T Consensus 117 la~l~~g~rVLDIGcG~G~~ta~~lA~~-----~ga~V~gIDis~~~l~~Ar~-------------------~~~~~gl- 171 (298)
T 3fpf_A 117 LGRFRRGERAVFIGGGPLPLTGILLSHV-----YGMRVNVVEIEPDIAELSRK-------------------VIEGLGV- 171 (298)
T ss_dssp HTTCCTTCEEEEECCCSSCHHHHHHHHT-----TCCEEEEEESSHHHHHHHHH-------------------HHHHHTC-
T ss_pred HcCCCCcCEEEEECCCccHHHHHHHHHc-----cCCEEEEEECCHHHHHHHHH-------------------HHHhcCC-
Confidence 4555568999999999875 55667662 37899999999999998877 3444455
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
++ |++..+++.+ ++ +++||+||+++.. +.....++++.+.|+|||++++.++.
T Consensus 172 ~~---v~~v~gDa~~-l~--d~~FDvV~~~a~~--~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 172 DG---VNVITGDETV-ID--GLEFDVLMVAALA--EPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp CS---EEEEESCGGG-GG--GCCCSEEEECTTC--SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CC---eEEEECchhh-CC--CCCcCEEEECCCc--cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 44 8999999887 34 5789999998874 45568899999999999999998854
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.6e-12 Score=108.08 Aligned_cols=129 Identities=16% Similarity=0.124 Sum_probs=93.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+++. +++.++++++|.++.+.+.+++ ++...+..++ +
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~---~~~~~~v~~vD~s~~~~~~a~~-------------------~~~~~~~~~~---v 76 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASL---VGENGRVFGFDIQDKAIANTTK-------------------KLTDLNLIDR---V 76 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHH---HCTTCEEEEECSCHHHHHHHHH-------------------HHHHTTCGGG---E
T ss_pred CCCEEEEcCCCCCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCC---e
Confidence 4579999999999999999985 4556899999999999888776 3333333233 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCC-C---------CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGH-D---------FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h-~---------~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
.+..++..+.....+++||+|+.+... . .......++.+.++|+|||++++.++...+....-...+..+
T Consensus 77 ~~~~~d~~~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~ 156 (197)
T 3eey_A 77 TLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEF 156 (197)
T ss_dssp EEECSCGGGGGGTCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHH
T ss_pred EEEECCHHHHhhhccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHH
Confidence 888998876543456899999988532 0 112356899999999999999998876533333345666666
Q ss_pred HHHc
Q 041517 305 AKIN 308 (327)
Q Consensus 305 ~~~~ 308 (327)
+...
T Consensus 157 ~~~l 160 (197)
T 3eey_A 157 LKGV 160 (197)
T ss_dssp HTTS
T ss_pred HHhC
Confidence 6543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=107.35 Aligned_cols=147 Identities=12% Similarity=-0.047 Sum_probs=97.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
.+..++...++.+|||||||+|..+..+++. ++..+++++|+++.+.+.+++.. ...
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~-------------------~~~ 76 (219)
T 3jwg_A 20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKD----KSFEQITGVDVSYSVLERAKDRL-------------------KID 76 (219)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHTS----TTCCEEEEEESCHHHHHHHHHHH-------------------TGG
T ss_pred HHHHHHhhcCCCEEEEecCCCCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHH-------------------Hhh
Confidence 3444445557899999999999999999873 44689999999999988887632 111
Q ss_pred ccCCc-ccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-C--cHHHHHHHHHccCCCCeEEEEEcCCCC-C--------
Q 041517 226 NAIDS-VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-N--SAWADINRAWRILRPGGVIFGHDYFTA-A-------- 292 (327)
Q Consensus 226 g~~~~-v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~--~v~~dl~~~~~lL~pGGvIi~dD~~~~-~-------- 292 (327)
++.+. ...+.+..++... ++...++||+|+......+ . .....++.+.+.|+|||+++....... .
T Consensus 77 ~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~ 155 (219)
T 3jwg_A 77 RLPEMQRKRISLFQSSLVY-RDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEG 155 (219)
T ss_dssp GSCHHHHTTEEEEECCSSS-CCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT---
T ss_pred ccccccCcceEEEeCcccc-cccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcc
Confidence 21110 0017788887633 2333478999997654322 3 225779999999999998887544320 0
Q ss_pred -----------CchhHHHHHHHHHHHcCCeEEEcc
Q 041517 293 -----------DNRGVRRAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 293 -----------~~~GV~~Av~~f~~~~gl~v~~~g 316 (327)
.....++.+..+++..|+++...|
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 156 NLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQ 190 (219)
T ss_dssp --GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cccccCceeeecHHHHHHHHHHHHHHCCcEEEEEe
Confidence 112255556688888898887543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.3e-11 Score=108.74 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=90.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..++.+|.. .++.+|++||+++.+.+.+++ |+...+.. . +
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~-------------------~~~~~~~~-~---v 122 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKIC----FPHLHVTIVDSLNKRITFLEK-------------------LSEALQLE-N---T 122 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHH----CTTCEEEEEESCHHHHHHHHH-------------------HHHHHTCS-S---E
T ss_pred CCCEEEEecCCCCHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHcCCC-C---E
Confidence 5689999999999999999974 347899999999999988876 33333332 2 8
Q ss_pred Eeeecchhhhhh--hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 235 PFSSGSALTKLC--EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 235 ~~~~gda~~~L~--~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
.+..+++.+... ...++||+|+.++- ......++.+.++|+|||++++.+... .......+...++..|+++
T Consensus 123 ~~~~~d~~~~~~~~~~~~~fD~V~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~g~~---~~~~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 123 TFCHDRAETFGQRKDVRESYDIVTARAV---ARLSVLSELCLPLVKKNGLFVALKAAS---AEEELNAGKKAITTLGGEL 196 (240)
T ss_dssp EEEESCHHHHTTCTTTTTCEEEEEEECC---SCHHHHHHHHGGGEEEEEEEEEEECC----CHHHHHHHHHHHHHTTEEE
T ss_pred EEEeccHHHhcccccccCCccEEEEecc---CCHHHHHHHHHHhcCCCCEEEEEeCCC---chHHHHHHHHHHHHcCCeE
Confidence 888998877431 12578999999884 345678999999999999998865432 1222233444556677665
Q ss_pred E
Q 041517 313 Q 313 (327)
Q Consensus 313 ~ 313 (327)
.
T Consensus 197 ~ 197 (240)
T 1xdz_A 197 E 197 (240)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-11 Score=104.97 Aligned_cols=147 Identities=11% Similarity=-0.072 Sum_probs=98.8
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
.+..++...++.+|||||||+|..+..+++. ++..+++++|+++.+.+.+++.. ...
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~-------------------~~~ 76 (217)
T 3jwh_A 20 GVVAALKQSNARRVIDLGCGQGNLLKILLKD----SFFEQITGVDVSYRSLEIAQERL-------------------DRL 76 (217)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHHC----TTCSEEEEEESCHHHHHHHHHHH-------------------TTC
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhh----CCCCEEEEEECCHHHHHHHHHHH-------------------HHh
Confidence 3444445557889999999999999999983 44679999999999988877632 212
Q ss_pred ccCCc-ccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-C--cHHHHHHHHHccCCCCeEEEEEcCCCC----------
Q 041517 226 NAIDS-VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-N--SAWADINRAWRILRPGGVIFGHDYFTA---------- 291 (327)
Q Consensus 226 g~~~~-v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~--~v~~dl~~~~~lL~pGGvIi~dD~~~~---------- 291 (327)
++.+. ...+.+..++... ++...++||+|+......+ . .....++.+.+.|+|||++++.+....
T Consensus 77 ~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~ 155 (217)
T 3jwh_A 77 RLPRNQWERLQLIQGALTY-QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAG 155 (217)
T ss_dssp CCCHHHHTTEEEEECCTTS-CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----
T ss_pred cCCcccCcceEEEeCCccc-ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccc
Confidence 21110 0017888887533 2333478999997654322 2 235779999999999998887654310
Q ss_pred ----------CCchhHHHHHHHHHHHcCCeEEEcc
Q 041517 292 ----------ADNRGVRRAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 292 ----------~~~~GV~~Av~~f~~~~gl~v~~~g 316 (327)
......++.+..+++..|+++...|
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~ 190 (217)
T 3jwh_A 156 KLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQP 190 (217)
T ss_dssp ------CCSCBCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred cccccccccccCHHHHHHHHHHHHHHcCceEEEEe
Confidence 0122355566688899999887654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.3e-12 Score=122.17 Aligned_cols=110 Identities=16% Similarity=0.110 Sum_probs=84.0
Q ss_pred HHHHHHHhhc--CCCEEEEEcCc------chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHH
Q 041517 145 AVFGNLIDKV--RPRVIIEVGSF------LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYF 216 (327)
Q Consensus 145 ~lL~~L~~~~--~p~~VLEIGt~------~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~ 216 (327)
.++..+++.. ++.+||||||| +|.+++.+++. +.++++|++||+++.|.. .
T Consensus 204 ~~Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~---~fP~a~V~GVDiSp~m~~---~--------------- 262 (419)
T 3sso_A 204 PHYDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKS---FFPRGQIYGLDIMDKSHV---D--------------- 262 (419)
T ss_dssp HHHHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHH---HCTTCEEEEEESSCCGGG---C---------------
T ss_pred HHHHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHH---hCCCCEEEEEECCHHHhh---c---------------
Confidence 3555554433 57899999999 77777887764 446899999999998631 0
Q ss_pred HHHHHHhhhccCCcccceEeeecchhhhhhhc------CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 217 QFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW------GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 217 ~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l------~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+ +.+..+|+.+. +.. .++||+|+.|+.|........|++++++|||||++++.|+.+
T Consensus 263 -----------~~r---I~fv~GDa~dl-pf~~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 263 -----------ELR---IRTIQGDQNDA-EFLDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp -----------BTT---EEEEECCTTCH-HHHHHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred -----------CCC---cEEEEeccccc-chhhhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 011 77888887652 222 478999999999977777889999999999999999999983
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.5e-11 Score=105.31 Aligned_cols=110 Identities=14% Similarity=0.093 Sum_probs=81.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||+|||+|..++.+++. ...+|+++|.++.+.+.+++ |+...+..++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~-----~~~~v~~vD~~~~~~~~a~~-------------------~~~~~~~~~~--- 95 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSR-----GMDKSICIEKNFAALKVIKE-------------------NIAITKEPEK--- 95 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHT-----TCSEEEEEESCHHHHHHHHH-------------------HHHHHTCGGG---
T ss_pred cCCCCEEEeCCccCHHHHHHHHc-----CCCEEEEEECCHHHHHHHHH-------------------HHHHhCCCcc---
Confidence 35689999999999999998872 25799999999999888776 3333333333
Q ss_pred eEeeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHH--HccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRA--WRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~--~~lL~pGGvIi~dD~~~ 290 (327)
+.+..+|..+.++.+ +.+||+|++|...........++.+ .++|+|||++++.....
T Consensus 96 ~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 96 FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred eEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 888899988865433 5789999999662222334556666 88999999999876554
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-11 Score=111.57 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=85.8
Q ss_pred HHHHHHHhh-cC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 145 AVFGNLIDK-VR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 145 ~lL~~L~~~-~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
.++..|++. .+ ..+|||||||+|..++.|++.+ ..++.+|++||+++.|.+.|++ ++
T Consensus 58 ~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~--~~~~~~v~gvD~s~~ml~~A~~-------------------~~ 116 (261)
T 4gek_A 58 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNI--HHDNCKIIAIDNSPAMIERCRR-------------------HI 116 (261)
T ss_dssp HHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTC--CSSSCEEEEEESCHHHHHHHHH-------------------HH
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhc--CCCCCEEEEEECCHHHHHHHHH-------------------HH
Confidence 344444443 33 4699999999999999999852 1346799999999999998876 33
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-C--cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-N--SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~--~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...+...+ |++..+|..+ ++. +.||+|++-....+ + .....++++.+.|+|||++++.|...
T Consensus 117 ~~~~~~~~---v~~~~~D~~~-~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 117 DAYKAPTP---VDVIEGDIRD-IAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp HTSCCSSC---EEEEESCTTT-CCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred HhhccCce---EEEeeccccc-ccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 33343334 8888888765 232 57999987654322 2 22356899999999999999987765
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.27 E-value=5e-11 Score=101.86 Aligned_cols=137 Identities=9% Similarity=0.053 Sum_probs=95.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC-ccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID-SVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~-~v~ 232 (327)
.+..+|||+|||+|..+..+++. +.+++++|+++.+.+.+++. +...+..+ +
T Consensus 51 ~~~~~vLdiG~G~G~~~~~~~~~------~~~v~~~D~~~~~~~~a~~~-------------------~~~~~~~~~~-- 103 (194)
T 1dus_A 51 DKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKEN-------------------IKLNNLDNYD-- 103 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHH-------------------HHHTTCTTSC--
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHH-------------------HHHcCCCccc--
Confidence 35679999999999999998873 68999999999988877652 32223322 2
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCC--CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHH-cC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDF--NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKI-NG 309 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~-~g 309 (327)
+.+..++..+.++ +++||+|+++..... ......++.+.++|+|||++++.+... .+..+..+.+.+. ..
T Consensus 104 -~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l~~~~~~ 176 (194)
T 1dus_A 104 -IRVVHSDLYENVK--DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK----QGAKSLAKYMKDVFGN 176 (194)
T ss_dssp -EEEEECSTTTTCT--TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST----HHHHHHHHHHHHHHSC
T ss_pred -eEEEECchhcccc--cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC----CChHHHHHHHHHHhcc
Confidence 7777787766433 468999999875322 334577899999999999999988765 2333333333322 25
Q ss_pred CeEEEccceEEEecc
Q 041517 310 LKVQIDGQHWVIHSA 324 (327)
Q Consensus 310 l~v~~~gq~w~i~~~ 324 (327)
+++......|.+-..
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (194)
T 1dus_A 177 VETVTIKGGYRVLKS 191 (194)
T ss_dssp CEEEEEETTEEEEEE
T ss_pred eEEEecCCcEEEEEE
Confidence 677777777776543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.8e-12 Score=112.10 Aligned_cols=108 Identities=23% Similarity=0.143 Sum_probs=84.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. . .++|+++|+++.+.+.+++ ++...+..++ +
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~-------------------~~~~~~~~~~---~ 98 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADY----V-KGQITGIDLFPDFIEIFNE-------------------NAVKANCADR---V 98 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHH----C-CSEEEEEESCHHHHHHHHH-------------------HHHHTTCTTT---E
T ss_pred CCCeEEEeCCCCCHHHHHHHHh----C-CCeEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---e
Confidence 4579999999999999999985 2 2499999999998887765 3334454444 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++..+++||+|+......+-+....++.+.++|+|||++++.+..|
T Consensus 99 ~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 153 (257)
T 3f4k_A 99 KGITGSMDN-LPFQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASW 153 (257)
T ss_dssp EEEECCTTS-CSSCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred EEEECChhh-CCCCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence 888888744 3433579999998865444456788999999999999999998654
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=106.76 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=85.6
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+....+..+|||+|||+|..++.+++. + ..+|++||.++.+.+.+++ |+...
T Consensus 44 l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~----~-~~~v~gvD~s~~~l~~a~~-------------------~~~~~ 99 (201)
T 2ift_A 44 LFNWLMPYIHQSECLDGFAGSGSLGFEALSR----Q-AKKVTFLELDKTVANQLKK-------------------NLQTL 99 (201)
T ss_dssp HHHHHHHHHTTCEEEETTCTTCHHHHHHHHT----T-CSEEEEECSCHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHHHhcCCCeEEEcCCccCHHHHHHHHc----c-CCEEEEEECCHHHHHHHHH-------------------HHHHh
Confidence 3444433336789999999999999987763 2 3699999999999988876 33333
Q ss_pred ccC-CcccceEeeecchhhhhhhc-CCc-EeEEEEcCCCCCCcHHHHHHHH--HccCCCCeEEEEEcCCC
Q 041517 226 NAI-DSVLPVPFSSGSALTKLCEW-GVV-GDLIEIDAGHDFNSAWADINRA--WRILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~-~~v~~V~~~~gda~~~L~~l-~~~-fDLIfIDa~h~~~~v~~dl~~~--~~lL~pGGvIi~dD~~~ 290 (327)
+.. ++ +.+..+|+.+.++.+ +++ ||+|++|...........++.+ .++|+|||++++.....
T Consensus 100 ~~~~~~---v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 100 KCSSEQ---AEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp TCCTTT---EEEECSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCccc---eEEEECCHHHHHHhhccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 332 23 889999988866543 468 9999999773234445567777 67899999998876654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.7e-11 Score=100.87 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=91.8
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||+|||+|..+..+++. ..+++++|.++.+.+.+++ ++...+...+
T Consensus 30 ~~~~~~~vldiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~-------------------~~~~~~~~~~- 83 (192)
T 1l3i_A 30 EPGKNDVAVDVGCGTGGVTLELAGR------VRRVYAIDRNPEAISTTEM-------------------NLQRHGLGDN- 83 (192)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHH-------------------HHHHTTCCTT-
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHh------cCEEEEEECCHHHHHHHHH-------------------HHHHcCCCcc-
Confidence 3445689999999999999999874 2899999999988887765 3333333233
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.+..++..+.++.. ..||+|+++... +.....++.+.+.|+|||++++.++.. ... ..+.+++++.|++
T Consensus 84 --~~~~~~d~~~~~~~~-~~~D~v~~~~~~--~~~~~~l~~~~~~l~~gG~l~~~~~~~----~~~-~~~~~~l~~~g~~ 153 (192)
T 1l3i_A 84 --VTLMEGDAPEALCKI-PDIDIAVVGGSG--GELQEILRIIKDKLKPGGRIIVTAILL----ETK-FEAMECLRDLGFD 153 (192)
T ss_dssp --EEEEESCHHHHHTTS-CCEEEEEESCCT--TCHHHHHHHHHHTEEEEEEEEEEECBH----HHH-HHHHHHHHHTTCC
T ss_pred --eEEEecCHHHhcccC-CCCCEEEECCch--HHHHHHHHHHHHhcCCCcEEEEEecCc----chH-HHHHHHHHHCCCc
Confidence 788888877755442 489999998763 345688999999999999999987754 223 3445555667765
Q ss_pred EE
Q 041517 312 VQ 313 (327)
Q Consensus 312 v~ 313 (327)
+.
T Consensus 154 ~~ 155 (192)
T 1l3i_A 154 VN 155 (192)
T ss_dssp CE
T ss_pred eE
Confidence 43
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=115.06 Aligned_cols=112 Identities=12% Similarity=0.059 Sum_probs=84.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
..+++|||||||+|.++..+++. .+..+|++||+++.+.+.++++.. .+. .++ ..+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~ar~~~~----------------~~~-~~~~~~r-- 150 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKH----PSVESVVQCEIDEDVIQVSKKFLP----------------GMA-IGYSSSK-- 150 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCH----------------HHH-GGGGCTT--
T ss_pred CCCCEEEEECCCchHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHhH----------------Hhh-cccCCCc--
Confidence 46889999999999999999873 457899999999999998887532 110 122 223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+++..+|+.+.++..+++||+|++|......+ ....++.+.++|+|||+++++...
T Consensus 151 -v~v~~~Da~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 151 -LTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp -EEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -EEEEECcHHHHHhhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 88899999887776668999999998653211 135789999999999999998743
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-11 Score=114.76 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=83.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
..+++|||||||+|.++..+++. .+..+|++||+++.+.+.|+++.. .. ..++ ..+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~Ar~~~~----------------~~-~~~~~~~r-- 163 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKH----ESVEKVTMCEIDEMVIDVAKKFLP----------------GM-SCGFSHPK-- 163 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTC----TTCCEEEEECSCHHHHHHHHHHCT----------------TT-SGGGGCTT--
T ss_pred CCCCEEEEEcCCcCHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHHH----------------Hh-ccccCCCC--
Confidence 46789999999999999999873 457899999999999998887542 10 0011 223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcH-----HHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSA-----WADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v-----~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+++..+|+.+.++..+++||+|++|......+. ...++.+.++|+|||+++++..
T Consensus 164 -v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~ 223 (314)
T 2b2c_A 164 -LDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 223 (314)
T ss_dssp -EEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred -EEEEEChHHHHHHhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence 889999998877665678999999985432111 4778999999999999999864
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.2e-11 Score=105.70 Aligned_cols=109 Identities=15% Similarity=0.032 Sum_probs=81.3
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||+|||+|..++.+++. + ..+|++||.++.+.+.+++ |+...+. ++
T Consensus 53 ~~~~~vLDlgcG~G~~~~~l~~~----~-~~~V~~vD~s~~~l~~a~~-------------------~~~~~~~-~~--- 104 (202)
T 2fpo_A 53 IVDAQCLDCFAGSGALGLEALSR----Y-AAGATLIEMDRAVSQQLIK-------------------NLATLKA-GN--- 104 (202)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHT----T-CSEEEEECSCHHHHHHHHH-------------------HHHHTTC-CS---
T ss_pred cCCCeEEEeCCCcCHHHHHHHhc----C-CCEEEEEECCHHHHHHHHH-------------------HHHHcCC-Cc---
Confidence 36789999999999999987763 2 3599999999999988876 3333333 23
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc--cCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWR--ILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~--lL~pGGvIi~dD~~~ 290 (327)
+.+..+|+.+.++..+.+||+|++|...........++.+.+ +|+|||++++.....
T Consensus 105 v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 105 ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp EEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred EEEEECCHHHHHhhcCCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 889999988876655678999999976223334456666654 599999998876543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-10 Score=105.14 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=87.7
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+++.. +..+|||||||+|..+..+++. . +.+|+++|+++.+.+.+++ +
T Consensus 48 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~gvD~s~~~~~~a~~-------------------~ 103 (273)
T 3bus_A 48 RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATA---R--DVRVTGISISRPQVNQANA-------------------R 103 (273)
T ss_dssp HHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHH---S--CCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHh---c--CCEEEEEeCCHHHHHHHHH-------------------H
Confidence 3445555543 4679999999999999999984 2 6899999999998887765 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...+..++ +.+..++..+ ++..+++||+|+.-. -+........++.+.+.|+|||++++.+...
T Consensus 104 ~~~~~~~~~---~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 104 ATAAGLANR---VTFSYADAMD-LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp HHHTTCTTT---EEEEECCTTS-CCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred HHhcCCCcc---eEEEECcccc-CCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 333344444 7888887665 333357899999654 3434556788999999999999999998765
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-11 Score=111.89 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=98.6
Q ss_pred HHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 150 LIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 150 L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
+.+..+ ..+|||+|||+|..++.+|+. +.. +|+++|.++.+.+.+++ |+...+..
T Consensus 119 l~~~~~~~~~VLDlgcG~G~~~~~la~~----~~~-~V~~vD~s~~~~~~a~~-------------------n~~~n~~~ 174 (278)
T 2frn_A 119 MAKVAKPDELVVDMFAGIGHLSLPIAVY----GKA-KVIAIEKDPYTFKFLVE-------------------NIHLNKVE 174 (278)
T ss_dssp HHHHCCTTCEEEETTCTTTTTHHHHHHH----TCC-EEEEECCCHHHHHHHHH-------------------HHHHTTCT
T ss_pred HHHhCCCCCEEEEecccCCHHHHHHHHh----CCC-EEEEEECCHHHHHHHHH-------------------HHHHcCCC
Confidence 333444 679999999999999999985 222 79999999999988876 44444554
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC-CCchhHHHHHHHHHHH
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA-ADNRGVRRAVNLFAKI 307 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~-~~~~GV~~Av~~f~~~ 307 (327)
++ +.+..+|+.+.+. +.+||+|++|.... ....++.+.+.|+|||++++.++... .......+.+...+..
T Consensus 175 ~~---v~~~~~D~~~~~~--~~~fD~Vi~~~p~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~ 246 (278)
T 2frn_A 175 DR---MSAYNMDNRDFPG--ENIADRILMGYVVR---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKE 246 (278)
T ss_dssp TT---EEEECSCTTTCCC--CSCEEEEEECCCSS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH
T ss_pred ce---EEEEECCHHHhcc--cCCccEEEECCchh---HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHH
Confidence 44 8888999887544 67899999985532 24678899999999999999887641 1112344566777888
Q ss_pred cCCeEEE
Q 041517 308 NGLKVQI 314 (327)
Q Consensus 308 ~gl~v~~ 314 (327)
.|+++..
T Consensus 247 ~G~~~~~ 253 (278)
T 2frn_A 247 YGYDVEK 253 (278)
T ss_dssp TTCEEEE
T ss_pred cCCeeEE
Confidence 8888765
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=6.1e-11 Score=107.88 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=101.0
Q ss_pred HHHHHhhcCC-CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 147 FGNLIDKVRP-RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 147 L~~L~~~~~p-~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
|+.+.+..++ .+|+|||||+|+.++.+|. .++..+|+++|+++++.+.|++ |+...
T Consensus 6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~----~~~~~~V~avDi~~~al~~A~~-------------------N~~~~ 62 (225)
T 3kr9_A 6 LELVASFVSQGAILLDVGSDHAYLPIELVE----RGQIKSAIAGEVVEGPYQSAVK-------------------NVEAH 62 (225)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTHHHHHHHH----TTSEEEEEEEESSHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHHhCCCCCEEEEeCCCcHHHHHHHHH----hCCCCEEEEEECCHHHHHHHHH-------------------HHHHc
Confidence 4556666655 5899999999999999998 3567899999999999988876 66666
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
|+.++ |.+..+|..+.++. +.+||+|++-+.- .+-...-++.+...|++||.+|+.-.. | ...+..++
T Consensus 63 gl~~~---i~~~~~d~l~~l~~-~~~~D~IviaG~G-g~~i~~Il~~~~~~L~~~~~lVlq~~~------~-~~~vr~~L 130 (225)
T 3kr9_A 63 GLKEK---IQVRLANGLAAFEE-TDQVSVITIAGMG-GRLIARILEEGLGKLANVERLILQPNN------R-EDDLRIWL 130 (225)
T ss_dssp TCTTT---EEEEECSGGGGCCG-GGCCCEEEEEEEC-HHHHHHHHHHTGGGCTTCCEEEEEESS------C-HHHHHHHH
T ss_pred CCCce---EEEEECchhhhccc-CcCCCEEEEcCCC-hHHHHHHHHHHHHHhCCCCEEEEECCC------C-HHHHHHHH
Confidence 76666 89999998776543 1269999985542 233567789999999999999985542 2 35666777
Q ss_pred HHcCCeEEE
Q 041517 306 KINGLKVQI 314 (327)
Q Consensus 306 ~~~gl~v~~ 314 (327)
.++|+.+..
T Consensus 131 ~~~Gf~i~~ 139 (225)
T 3kr9_A 131 QDHGFQIVA 139 (225)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCEEEE
Confidence 788887653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.7e-11 Score=109.87 Aligned_cols=106 Identities=21% Similarity=0.222 Sum_probs=82.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||||||+|..+..+++. +.+++++|+++.+.+.+++. +...+...+ +.
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~~~---v~ 120 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAER------GHQVILCDLSAQMIDRAKQA-------------------AEAKGVSDN---MQ 120 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHH-------------------HHC-CCGGG---EE
T ss_pred CCEEEEeCCcchHHHHHHHHC------CCEEEEEECCHHHHHHHHHH-------------------HHhcCCCcc---eE
Confidence 569999999999999999984 67999999999988877663 222233233 88
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+..++..+.....+++||+|+...... .+.....++.+.++|+|||++++.++.
T Consensus 121 ~~~~d~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 121 FIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EEESCGGGTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred EEEcCHHHhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 888888775434568999999876532 345678899999999999999998764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=109.36 Aligned_cols=108 Identities=15% Similarity=0.020 Sum_probs=82.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. . +.+++++|+++.+.+.+++ ++...++.++
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~---~--~~~v~gvD~s~~~l~~a~~-------------------~~~~~~~~~~--- 87 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARD---H--GITGTGIDMSSLFTAQAKR-------------------RAEELGVSER--- 87 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHH---T--CCEEEEEESCHHHHHHHHH-------------------HHHHTTCTTT---
T ss_pred CCCCEEEEECCCCCHHHHHHHHh---c--CCeEEEEeCCHHHHHHHHH-------------------HHHhcCCCcc---
Confidence 34679999999999999999985 2 5689999999999887765 3333344334
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+. +. +++||+|+.- ..|........++++.+.|+|||++++.+..+
T Consensus 88 v~~~~~d~~~~-~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (256)
T 1nkv_A 88 VHFIHNDAAGY-VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW 143 (256)
T ss_dssp EEEEESCCTTC-CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred eEEEECChHhC-Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 88888887663 33 6789999974 33334456788999999999999999987554
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-11 Score=111.19 Aligned_cols=108 Identities=18% Similarity=0.116 Sum_probs=84.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. +..+|+++|+++.+.+.+++ ++...+..++ +
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~-----~~~~v~gvD~s~~~~~~a~~-------------------~~~~~~~~~~---v 98 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGH-----VTGQVTGLDFLSGFIDIFNR-------------------NARQSGLQNR---V 98 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTT-----CSSEEEEEESCHHHHHHHHH-------------------HHHHTTCTTT---E
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHH-------------------HHHHcCCCcC---c
Confidence 4689999999999999999973 36799999999998887766 3333344444 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..++..+ ++..+++||+|+.......-.....++.+.++|+|||++++.+..+
T Consensus 99 ~~~~~d~~~-~~~~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 153 (267)
T 3kkz_A 99 TGIVGSMDD-LPFRNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSW 153 (267)
T ss_dssp EEEECCTTS-CCCCTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred EEEEcChhh-CCCCCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeee
Confidence 888888755 3333578999998865433356788999999999999999998764
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.9e-11 Score=106.58 Aligned_cols=105 Identities=17% Similarity=0.080 Sum_probs=79.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|.+++.+|+. .++.+|++||+++.+.+.+++ ++...++. + +
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~----~p~~~v~giD~s~~~l~~a~~-------------------~~~~~~l~-n---v 86 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKD----RPEQDFLGIEVHSPGVGACLA-------------------SAHEEGLS-N---L 86 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHH----CTTSEEEEECSCHHHHHHHHH-------------------HHHHTTCS-S---E
T ss_pred CCCeEEEEeeeChHHHHHHHHH----CCCCeEEEEEecHHHHHHHHH-------------------HHHHhCCC-c---E
Confidence 5679999999999999999985 457899999999998887765 33333332 2 8
Q ss_pred Eeeecchhhhhhh--cCCcEeEEEEcCCCCCCcH---------HHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCE--WGVVGDLIEIDAGHDFNSA---------WADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~--l~~~fDLIfIDa~h~~~~v---------~~dl~~~~~lL~pGGvIi~d 286 (327)
++..+|+.+.++. .+++||.|++...-.++.. ...++.+.++|+|||++++.
T Consensus 87 ~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~ 149 (218)
T 3dxy_A 87 RVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA 149 (218)
T ss_dssp EEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence 8999999887653 2589999998632222111 14789999999999988764
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-11 Score=104.46 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=77.6
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|+.+..+++. ..+|+++|+++.+.+.+++ ++...+.. +
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~la~~------~~~v~~vD~~~~~~~~a~~-------------------~~~~~~~~-~- 126 (210)
T 3lbf_A 74 ELTPQSRVLEIGTGSGYQTAILAHL------VQHVCSVERIKGLQWQARR-------------------RLKNLDLH-N- 126 (210)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHH-------------------HHHHTTCC-S-
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEecCHHHHHHHHH-------------------HHHHcCCC-c-
Confidence 3345689999999999999999985 6899999999998887766 33332332 2
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.+..++..+.+.. +++||+|++++...+-. +.+.++|+|||++++.-
T Consensus 127 --v~~~~~d~~~~~~~-~~~~D~i~~~~~~~~~~-----~~~~~~L~pgG~lv~~~ 174 (210)
T 3lbf_A 127 --VSTRHGDGWQGWQA-RAPFDAIIVTAAPPEIP-----TALMTQLDEGGILVLPV 174 (210)
T ss_dssp --EEEEESCGGGCCGG-GCCEEEEEESSBCSSCC-----THHHHTEEEEEEEEEEE
T ss_pred --eEEEECCcccCCcc-CCCccEEEEccchhhhh-----HHHHHhcccCcEEEEEE
Confidence 88888888775433 57899999997654433 46889999999988843
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=100.35 Aligned_cols=105 Identities=12% Similarity=-0.038 Sum_probs=77.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+++. +.+++++|.++.+.+.+++ |+...+. + +
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~-------------------~~~~~~~--~---~ 90 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKE-------------------NVRRTGL--G---A 90 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHH-------------------HHHHHTC--C---C
T ss_pred CCCeEEEeCCCcCHHHHHHHHC------CCeEEEEeCCHHHHHHHHH-------------------HHHHcCC--c---e
Confidence 6789999999999999999984 3449999999999888776 3333332 2 7
Q ss_pred Eeeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHHH--ccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRAW--RILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~~--~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+.++.. +++||+|++|.... ......++.+. ++|+|||++++.....
T Consensus 91 ~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 91 RVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp EEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred EEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 88888888755443 34899999996432 22224556665 9999999998876654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=109.23 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=99.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..++...+..+|||+|||+|..++.+|+. ++..++|+++|+++.+.+.+++ |+..
T Consensus 108 ~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~---~~~~~~v~avD~s~~~l~~a~~-------------------~~~~ 165 (315)
T 1ixk_A 108 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQL---MRNDGVIYAFDVDENRLRETRL-------------------NLSR 165 (315)
T ss_dssp HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHH---TTTCSEEEEECSCHHHHHHHHH-------------------HHHH
T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHH---hCCCCEEEEEcCCHHHHHHHHH-------------------HHHH
Confidence 34445555445679999999999999999985 4557899999999998887765 4443
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-------Cc----------------HHHHHHHHHccCCCCe
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-------NS----------------AWADINRAWRILRPGG 281 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-------~~----------------v~~dl~~~~~lL~pGG 281 (327)
.|.. . +.+..+|+.+. +..+++||+|++|+.... +. ....++.+.++|+|||
T Consensus 166 ~g~~-~---v~~~~~D~~~~-~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG 240 (315)
T 1ixk_A 166 LGVL-N---VILFHSSSLHI-GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGG 240 (315)
T ss_dssp HTCC-S---EEEESSCGGGG-GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEE
T ss_pred hCCC-e---EEEEECChhhc-ccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3432 2 78888887764 334678999999954211 11 1367889999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
++++..+...+ ..-...+..|.++.++++..
T Consensus 241 ~lv~stcs~~~--~Ene~~v~~~l~~~~~~~~~ 271 (315)
T 1ixk_A 241 ILVYSTCSLEP--EENEFVIQWALDNFDVELLP 271 (315)
T ss_dssp EEEEEESCCCG--GGTHHHHHHHHHHSSEEEEC
T ss_pred EEEEEeCCCCh--HHhHHHHHHHHhcCCCEEec
Confidence 99998876532 12234566777777766544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.19 E-value=8.3e-11 Score=109.40 Aligned_cols=112 Identities=12% Similarity=0.069 Sum_probs=86.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
..+++|||||||+|..+..+++ ..+..+|++||+++.+.+.++++.. .+. .++ ..+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~----~~~~~~v~~vEid~~~v~~ar~~~~----------------~~~-~~~~~~r-- 130 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILK----HPSVKKATLVDIDGKVIEYSKKFLP----------------SIA-GKLDDPR-- 130 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTT----CTTCSEEEEEESCHHHHHHHHHHCH----------------HHH-TTTTSTT--
T ss_pred CCCCEEEEECCchHHHHHHHHh----CCCCceEEEEECCHHHHHHHHHHhH----------------hhc-cccCCCc--
Confidence 3689999999999999999886 3346899999999999998887532 111 012 223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+++..+|+.+.++..+++||+|++|......+ ....++.+.+.|+|||++++....
T Consensus 131 -v~v~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 131 -VDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp -EEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred -eEEEECcHHHHHhhCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 88999999887776668999999997653211 247899999999999999998543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-11 Score=106.85 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=86.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
.+..++...+..+|||+|||+|..++.+++. +++.++++++|.++.+.+.+++ |+...
T Consensus 84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~~~a~~-------------------~~~~~ 141 (255)
T 3mb5_A 84 LIVAYAGISPGDFIVEAGVGSGALTLFLANI---VGPEGRVVSYEIREDFAKLAWE-------------------NIKWA 141 (255)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---HCTTSEEEEECSCHHHHHHHHH-------------------HHHHH
T ss_pred HHHHhhCCCCCCEEEEecCCchHHHHHHHHH---hCCCeEEEEEecCHHHHHHHHH-------------------HHHHc
Confidence 3333444445789999999999999999985 4678999999999998888766 34444
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+..++ +.+..+|..+.++ +.+||+|++|... .+..++.+.+.|+|||++++....
T Consensus 142 ~~~~~---v~~~~~d~~~~~~--~~~~D~v~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 142 GFDDR---VTIKLKDIYEGIE--EENVDHVILDLPQ----PERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp TCTTT---EEEECSCGGGCCC--CCSEEEEEECSSC----GGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCc---eEEEECchhhccC--CCCcCEEEECCCC----HHHHHHHHHHHcCCCCEEEEEECC
Confidence 55444 8888888876533 3679999997542 346899999999999999986544
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.1e-10 Score=98.86 Aligned_cols=117 Identities=21% Similarity=0.246 Sum_probs=86.3
Q ss_pred HHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
+...+++.. ++++|||||||+|..+..+++. ++.+++++|+++.+.+.+++ ++.
T Consensus 32 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-----~~~~v~~~D~s~~~~~~a~~-------------------~~~ 87 (219)
T 3dlc_A 32 IAENIINRFGITAGTCIDIGSGPGALSIALAKQ-----SDFSIRALDFSKHMNEIALK-------------------NIA 87 (219)
T ss_dssp HHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-----SEEEEEEEESCHHHHHHHHH-------------------HHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-----CCCeEEEEECCHHHHHHHHH-------------------HHH
Confidence 334444433 3459999999999999999983 36799999999998887766 333
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+..++ +.+..++..+ ++..+++||+|+.... |..+.....++.+.++|+|||++++.+...
T Consensus 88 ~~~~~~~---~~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 88 DANLNDR---IQIVQGDVHN-IPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp HTTCTTT---EEEEECBTTB-CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred hccccCc---eEEEEcCHHH-CCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 3343334 7888888765 3333578999998754 334566789999999999999999987554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-10 Score=105.73 Aligned_cols=140 Identities=12% Similarity=0.039 Sum_probs=97.4
Q ss_pred chHHHHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 141 GSYGAVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 141 ~~~g~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
+..+.+|..++... +..+|||+|||+|..++.+++. + ..+|+++|+++.+.+.+++
T Consensus 34 ~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~----~-~~~v~gvDi~~~~~~~a~~------------------ 90 (259)
T 3lpm_A 34 SIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTR----T-KAKIVGVEIQERLADMAKR------------------ 90 (259)
T ss_dssp CHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTT----C-CCEEEEECCSHHHHHHHHH------------------
T ss_pred cHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHh----c-CCcEEEEECCHHHHHHHHH------------------
Confidence 45566777777655 6789999999999999999873 3 3499999999999888776
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCC---------------------CcHHHHHHHHHccC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDF---------------------NSAWADINRAWRIL 277 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~---------------------~~v~~dl~~~~~lL 277 (327)
|+...++.++ +.+..+|..+....+ .++||+|+.|...-. ......++.+.++|
T Consensus 91 -n~~~~~~~~~---v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L 166 (259)
T 3lpm_A 91 -SVAYNQLEDQ---IEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLL 166 (259)
T ss_dssp -HHHHTTCTTT---EEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHE
T ss_pred -HHHHCCCccc---EEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHc
Confidence 4444455555 888899988765434 579999999732100 11235688999999
Q ss_pred CCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 278 RPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 278 ~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
+|||++++- .. + ... ..+...+...++.+.
T Consensus 167 kpgG~l~~~--~~-~--~~~-~~~~~~l~~~~~~~~ 196 (259)
T 3lpm_A 167 KQGGKANFV--HR-P--ERL-LDIIDIMRKYRLEPK 196 (259)
T ss_dssp EEEEEEEEE--EC-T--TTH-HHHHHHHHHTTEEEE
T ss_pred cCCcEEEEE--Ec-H--HHH-HHHHHHHHHCCCceE
Confidence 999998882 22 1 112 234444556666543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-10 Score=101.77 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=92.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+ ...++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++..
T Consensus 44 ~~~~~-~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~---------------------- 94 (227)
T 3e8s_A 44 ILLAI-LGRQPERVLDLGCGEGWLLRALADR------GIEAVGVDGDRTLVDAARAAG---------------------- 94 (227)
T ss_dssp HHHHH-HHTCCSEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHTC----------------------
T ss_pred HHHHh-hcCCCCEEEEeCCCCCHHHHHHHHC------CCEEEEEcCCHHHHHHHHHhc----------------------
Confidence 44444 3446799999999999999999873 679999999998887766521
Q ss_pred ccCCcccceEeeecchhhhh--h-hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC---------
Q 041517 226 NAIDSVLPVPFSSGSALTKL--C-EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD--------- 293 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L--~-~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~--------- 293 (327)
. +.+..++..+.. + ..+.+||+|+.............++.+.++|+|||++++.+......
T Consensus 95 ----~---~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~ 167 (227)
T 3e8s_A 95 ----A---GEVHLASYAQLAEAKVPVGKDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGW 167 (227)
T ss_dssp ----S---SCEEECCHHHHHTTCSCCCCCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEE
T ss_pred ----c---cccchhhHHhhcccccccCCCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecCccccCcccccccc
Confidence 1 344445544431 1 12356999998754335666789999999999999999987643110
Q ss_pred ----chh-------------HHHHHHHHHHHcCCeEEE
Q 041517 294 ----NRG-------------VRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 294 ----~~G-------------V~~Av~~f~~~~gl~v~~ 314 (327)
+.+ -.+.+..+++..|+++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 205 (227)
T 3e8s_A 168 REESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVS 205 (227)
T ss_dssp EEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEEE
T ss_pred chhhhhccccCcccceEEEecHHHHHHHHHHcCCeEEE
Confidence 100 346677778889988763
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=101.56 Aligned_cols=134 Identities=16% Similarity=0.071 Sum_probs=96.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..+.... +.+|||||||+|..+..+++. +.+++++|+++.+.+.+++..
T Consensus 32 ~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~--------------------- 83 (203)
T 3h2b_A 32 VLIEPWATGV-DGVILDVGSGTGRWTGHLASL------GHQIEGLEPATRLVELARQTH--------------------- 83 (203)
T ss_dssp HHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT------TCCEEEECCCHHHHHHHHHHC---------------------
T ss_pred HHHHHHhccC-CCeEEEecCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhC---------------------
Confidence 4555555443 789999999999999999984 569999999998887665521
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-C--CcHHHHHHHHHccCCCCeEEEEEcCCCCCC--------
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-F--NSAWADINRAWRILRPGGVIFGHDYFTAAD-------- 293 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~--~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-------- 293 (327)
.+ +.+..++..+ ++..+++||+|+...... . ......++.+.++|+|||++++.+......
T Consensus 84 ----~~---~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~ 155 (203)
T 3h2b_A 84 ----PS---VTFHHGTITD-LSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVA 155 (203)
T ss_dssp ----TT---SEEECCCGGG-GGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSS
T ss_pred ----CC---CeEEeCcccc-cccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhh
Confidence 01 6777777765 344458999999865422 2 256788999999999999999887654210
Q ss_pred --chhHHHHHHHHHHHcCCeEEE
Q 041517 294 --NRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 294 --~~GV~~Av~~f~~~~gl~v~~ 314 (327)
..--.+.+..+++..|+++..
T Consensus 156 ~~~~~~~~~~~~~l~~~Gf~~~~ 178 (203)
T 3h2b_A 156 TAYRWPLPELAQALETAGFQVTS 178 (203)
T ss_dssp CEEECCHHHHHHHHHHTTEEEEE
T ss_pred hhccCCHHHHHHHHHHCCCcEEE
Confidence 001246677777888988653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=102.35 Aligned_cols=144 Identities=14% Similarity=0.116 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
....++..+ ...+..+|||||||+|..+..+++. .++..+++++|+++.+.+.+++.
T Consensus 25 ~~~~~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~---~~~~~~v~~vD~s~~~~~~a~~~------------------- 81 (219)
T 3dh0_A 25 DPEKVLKEF-GLKEGMTVLDVGTGAGFYLPYLSKM---VGEKGKVYAIDVQEEMVNYAWEK------------------- 81 (219)
T ss_dssp CHHHHHHHH-TCCTTCEEEESSCTTCTTHHHHHHH---HTTTCEEEEEESCHHHHHHHHHH-------------------
T ss_pred CHHHHHHHh-CCCCCCEEEEEecCCCHHHHHHHHH---hCCCcEEEEEECCHHHHHHHHHH-------------------
Confidence 334455544 3445679999999999999999985 34678999999999988877663
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh----
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRG---- 296 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G---- 296 (327)
+...+.. + +.+..++..+. +..+++||+|+.... +........++.+.++|+|||++++.++.......+
T Consensus 82 ~~~~~~~-~---~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~ 156 (219)
T 3dh0_A 82 VNKLGLK-N---VEVLKSEENKI-PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPE 156 (219)
T ss_dssp HHHHTCT-T---EEEEECBTTBC-SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGG
T ss_pred HHHcCCC-c---EEEEecccccC-CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchh
Confidence 2222321 2 77888876552 333578999998754 333456788999999999999999988765221111
Q ss_pred ---HHHHHHHHHHHcCCeEE
Q 041517 297 ---VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 ---V~~Av~~f~~~~gl~v~ 313 (327)
-.+.+..+++..|+++.
T Consensus 157 ~~~~~~~~~~~l~~~Gf~~~ 176 (219)
T 3dh0_A 157 EVYSEWEVGLILEDAGIRVG 176 (219)
T ss_dssp GSCCHHHHHHHHHHTTCEEE
T ss_pred cccCHHHHHHHHHHCCCEEE
Confidence 24566777788898854
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=111.66 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=86.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
.++++|||||||+|..+..+++. .+..+|++||+++.+.+.++++.. ... .++ ..+
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~----~~~~~V~~VDis~~~l~~Ar~~~~----------------~~~-~gl~~~r-- 175 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARH----ASIEQIDMCEIDKMVVDVSKQFFP----------------DVA-IGYEDPR-- 175 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTC----TTCCEEEEEESCHHHHHHHHHHCH----------------HHH-GGGGSTT--
T ss_pred CCCCEEEEECCCccHHHHHHHHc----CCCCEEEEEECCHHHHHHHHHHHH----------------hhc-cccCCCc--
Confidence 36789999999999999999873 447899999999999998887532 110 122 123
Q ss_pred ceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEE-cCCC
Q 041517 233 PVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGH-DYFT 290 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~d-D~~~ 290 (327)
+++..+|+.+.++.. +++||+|++|....... ....++.+.++|+|||+++++ +..|
T Consensus 176 -v~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~ 239 (334)
T 1xj5_A 176 -VNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 239 (334)
T ss_dssp -EEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred -EEEEECCHHHHHHhccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence 889999998877654 47899999997643211 247899999999999999997 5554
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=101.26 Aligned_cols=144 Identities=15% Similarity=0.133 Sum_probs=100.9
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
..++..+. ..++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++.. .
T Consensus 35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~-------------------~ 88 (220)
T 3hnr_A 35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA------GRTVYGIEPSREMRMIAKEKL-------------------P 88 (220)
T ss_dssp HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT------TCEEEEECSCHHHHHHHHHHS-------------------C
T ss_pred HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC------CCeEEEEeCCHHHHHHHHHhC-------------------C
Confidence 34555553 336789999999999999999984 679999999998887765521 1
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHH--HHHHHHccCCCCeEEEEEcCCCCCCchh----
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWA--DINRAWRILRPGGVIFGHDYFTAADNRG---- 296 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~--dl~~~~~lL~pGGvIi~dD~~~~~~~~G---- 296 (327)
.+ +.+..++..+. +.. ++||+|+...... .+.... .++++.+.|+|||++++.+..... ...
T Consensus 89 -----~~---~~~~~~d~~~~-~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~~ 157 (220)
T 3hnr_A 89 -----KE---FSITEGDFLSF-EVP-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFAD-QDAYDKT 157 (220)
T ss_dssp -----TT---CCEESCCSSSC-CCC-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSS-HHHHHHH
T ss_pred -----Cc---eEEEeCChhhc-CCC-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccC-hHHHHHH
Confidence 11 66666766552 222 7899999875432 233333 799999999999999998865411 111
Q ss_pred ----------------------HHHHHHHHHHHcCCeEE---EccceEEEecc
Q 041517 297 ----------------------VRRAVNLFAKINGLKVQ---IDGQHWVIHSA 324 (327)
Q Consensus 297 ----------------------V~~Av~~f~~~~gl~v~---~~gq~w~i~~~ 324 (327)
-.+.+..+++..|+++. ..+..|+|..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~w~~~~~ 210 (220)
T 3hnr_A 158 VEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRLNHFVWVMEAT 210 (220)
T ss_dssp HHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEECSSSEEEEEEE
T ss_pred HHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeeccceEEEEeeh
Confidence 12456677888898755 46888998754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=109.31 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=94.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC-cccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID-SVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~-~v~~ 233 (327)
++.+|||+|||+|..++.+|+. +.+|++||.++.+.+.+++ |+...++.+ +
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~------ga~V~~VD~s~~al~~a~~-------------------n~~~~gl~~~~--- 204 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKE-------------------NQVLAGLEQAP--- 204 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHH-------------------HHHHHTCTTSC---
T ss_pred CCCcEEEcccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHH-------------------HHHHcCCCccc---
Confidence 4579999999999999999983 4499999999999988876 444344433 3
Q ss_pred eEeeecchhhhhhhc---CCcEeEEEEcCCC-C----------CCcHHHHHHHHHccCCCCeEEEEEcCCC-CCCchhHH
Q 041517 234 VPFSSGSALTKLCEW---GVVGDLIEIDAGH-D----------FNSAWADINRAWRILRPGGVIFGHDYFT-AADNRGVR 298 (327)
Q Consensus 234 V~~~~gda~~~L~~l---~~~fDLIfIDa~h-~----------~~~v~~dl~~~~~lL~pGGvIi~dD~~~-~~~~~GV~ 298 (327)
+++..+|+.+.++.+ +.+||+|++|... . .......++.+.++|+|||++++..... ........
T Consensus 205 v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~ 284 (332)
T 2igt_A 205 IRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMH 284 (332)
T ss_dssp EEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHH
T ss_pred eEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHH
Confidence 788899988876543 5789999998541 0 0123456788899999999966655443 22333466
Q ss_pred HHHHHHHHHcCCeEE
Q 041517 299 RAVNLFAKINGLKVQ 313 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~ 313 (327)
+.+.+.+...|.++.
T Consensus 285 ~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 285 ELMRETMRGAGGVVA 299 (332)
T ss_dssp HHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHcCCeEE
Confidence 777777777787775
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=109.36 Aligned_cols=127 Identities=13% Similarity=0.036 Sum_probs=90.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
..+++|||||||+|..+..+++ ..+..+|+++|+++.+.+.++++.. .+ ..+. ..+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~----~~~~~~v~~vDis~~~l~~ar~~~~----------------~~-~~~~~~~~-- 171 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCK----YKSVENIDICEIDETVIEVSKIYFK----------------NI-SCGYEDKR-- 171 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTT----CTTCCEEEEEESCHHHHHHHHHHCT----------------TT-SGGGGSTT--
T ss_pred CCCCEEEEEcCCccHHHHHHHH----cCCCCEEEEEECCHHHHHHHHHHHH----------------hh-ccccCCCc--
Confidence 4678999999999999999886 3447899999999999998887542 10 0111 123
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcH-----HHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSA-----WADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v-----~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+++..+|+.+.++..+++||+|++|......+. ...++.+.+.|+|||++++...........+++.++.+
T Consensus 172 -v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l 247 (321)
T 2pt6_A 172 -VNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYA 247 (321)
T ss_dssp -EEEEESCHHHHHHHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHH
T ss_pred -EEEEEccHHHHHhhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHH
Confidence 889999998877665678999999975332211 57789999999999999997543211222344444444
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=105.56 Aligned_cols=128 Identities=18% Similarity=0.105 Sum_probs=87.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|+++..+|+. ++++|+|+++|+++.|.+.+++... .. .. +.
T Consensus 78 G~~VldlG~G~G~~~~~la~~---VG~~G~V~avD~s~~~~~~l~~~a~-------------------~~---~n---i~ 129 (233)
T 4df3_A 78 GDRILYLGIASGTTASHMSDI---IGPRGRIYGVEFAPRVMRDLLTVVR-------------------DR---RN---IF 129 (233)
T ss_dssp TCEEEEETCTTSHHHHHHHHH---HCTTCEEEEEECCHHHHHHHHHHST-------------------TC---TT---EE
T ss_pred CCEEEEecCcCCHHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHhhH-------------------hh---cC---ee
Confidence 579999999999999999996 6889999999999988876654221 11 12 44
Q ss_pred eeecchhh--hhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC----chh-HHHHHHHHHHHc
Q 041517 236 FSSGSALT--KLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD----NRG-VRRAVNLFAKIN 308 (327)
Q Consensus 236 ~~~gda~~--~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~----~~G-V~~Av~~f~~~~ 308 (327)
...++..+ ..+.....+|+||.|-.+.. .....+.++.+.|||||.+++.+-....+ .+. ..+.++.+ ...
T Consensus 130 ~V~~d~~~p~~~~~~~~~vDvVf~d~~~~~-~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L-~~~ 207 (233)
T 4df3_A 130 PILGDARFPEKYRHLVEGVDGLYADVAQPE-QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTL-MDG 207 (233)
T ss_dssp EEESCTTCGGGGTTTCCCEEEEEECCCCTT-HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHH-HHT
T ss_pred EEEEeccCccccccccceEEEEEEeccCCh-hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHH-HHC
Confidence 44444332 23344578999999987753 44567899999999999988754433111 112 33444443 556
Q ss_pred CCeEE
Q 041517 309 GLKVQ 313 (327)
Q Consensus 309 gl~v~ 313 (327)
|+++.
T Consensus 208 GF~l~ 212 (233)
T 4df3_A 208 GLEIK 212 (233)
T ss_dssp TCCEE
T ss_pred CCEEE
Confidence 77653
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-10 Score=100.05 Aligned_cols=127 Identities=13% Similarity=0.031 Sum_probs=89.1
Q ss_pred CCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+|||+||| +|..++.+++.. +.+|+++|+++.+.+.+++ |+...+. .
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~-----~~~v~~vD~s~~~~~~a~~-------------------~~~~~~~-----~ 105 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFF-----NCKVTATEVDEEFFEYARR-------------------NIERNNS-----N 105 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHH-----CCEEEEEECCHHHHHHHHH-------------------HHHHTTC-----C
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhc-----CCEEEEEECCHHHHHHHHH-------------------HHHHhCC-----C
Confidence 46899999999 999999999852 6899999999999888876 3333333 2
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCC--------------------CCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGH--------------------DFNSAWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h--------------------~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
+.+..+++.......+++||+|+.+... ........++.+.++|+|||++++--..
T Consensus 106 v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---- 181 (230)
T 3evz_A 106 VRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD---- 181 (230)
T ss_dssp CEEEECSSCSSTTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES----
T ss_pred cEEEeCCchhhhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc----
Confidence 7778887532212224789999987321 1111356789999999999998874222
Q ss_pred chhHHHHHHHHHHHcCCeEEE
Q 041517 294 NRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 294 ~~GV~~Av~~f~~~~gl~v~~ 314 (327)
.+.-.+.+...+...|+++..
T Consensus 182 ~~~~~~~~~~~l~~~g~~~~~ 202 (230)
T 3evz_A 182 KEKLLNVIKERGIKLGYSVKD 202 (230)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE
T ss_pred cHhHHHHHHHHHHHcCCceEE
Confidence 123345566667778887654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=105.40 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=81.5
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...++.+|||||||+|..+..+++. ..+|+++|+++.+.+.+++. +...+.. +
T Consensus 34 ~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~-------------------~~~~~~~-~- 86 (260)
T 1vl5_A 34 ALKGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAF-------------------IEGNGHQ-Q- 86 (260)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHH-------------------HHHTTCC-S-
T ss_pred CCCCCCEEEEEeCCCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHHH-------------------HHhcCCC-c-
Confidence 3446789999999999999998874 35999999999998877652 2222221 2
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ ++..+++||+|+... .|..+.....++++.+.|+|||++++.+...
T Consensus 87 --v~~~~~d~~~-l~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (260)
T 1vl5_A 87 --VEYVQGDAEQ-MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 143 (260)
T ss_dssp --EEEEECCC-C-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred --eEEEEecHHh-CCCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence 7788887655 343357899999874 4445666789999999999999999876554
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-10 Score=105.21 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=102.2
Q ss_pred HHHHHhhcCC-CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 147 FGNLIDKVRP-RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 147 L~~L~~~~~p-~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
|+.+.+..++ .+|+|||||+|+.++.+|. .++..+|+++|+++++.+.|++ |+...
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~----~~~~~~V~AvDi~~~al~~A~~-------------------N~~~~ 68 (230)
T 3lec_A 12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQ----MGYCDFAIAGEVVNGPYQSALK-------------------NVSEH 68 (230)
T ss_dssp HHHHHTTSCTTEEEEEETCSTTHHHHHHHH----TTCEEEEEEEESSHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHHhCCCCCEEEEECCchHHHHHHHHH----hCCCCEEEEEECCHHHHHHHHH-------------------HHHHc
Confidence 4555566654 5899999999999999998 3557799999999999998876 66666
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
|+.++ |.+..+|..+.+.. +.+||+|+|-+.- .+-...-++.+.+.|+++|.+|+.-... ...+..+.
T Consensus 69 gl~~~---I~~~~gD~l~~~~~-~~~~D~IviaGmG-g~lI~~IL~~~~~~l~~~~~lIlqp~~~-------~~~lr~~L 136 (230)
T 3lec_A 69 GLTSK---IDVRLANGLSAFEE-ADNIDTITICGMG-GRLIADILNNDIDKLQHVKTLVLQPNNR-------EDDLRKWL 136 (230)
T ss_dssp TCTTT---EEEEECSGGGGCCG-GGCCCEEEEEEEC-HHHHHHHHHHTGGGGTTCCEEEEEESSC-------HHHHHHHH
T ss_pred CCCCc---EEEEECchhhcccc-ccccCEEEEeCCc-hHHHHHHHHHHHHHhCcCCEEEEECCCC-------hHHHHHHH
Confidence 77666 89999998886542 2379999986543 2335566888899999999999866432 56777788
Q ss_pred HHcCCeEEE
Q 041517 306 KINGLKVQI 314 (327)
Q Consensus 306 ~~~gl~v~~ 314 (327)
.++|+.+..
T Consensus 137 ~~~Gf~i~~ 145 (230)
T 3lec_A 137 AANDFEIVA 145 (230)
T ss_dssp HHTTEEEEE
T ss_pred HHCCCEEEE
Confidence 888987653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=106.03 Aligned_cols=125 Identities=11% Similarity=0.021 Sum_probs=89.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..++.+|.. .++.+|++||.++.+.+.+++ |+...++. . |
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~----~~~~~v~~vD~s~~~~~~a~~-------------------~~~~~~l~-~---v 132 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIV----RPELELVLVDATRKKVAFVER-------------------AIEVLGLK-G---A 132 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHH----CTTCEEEEEESCHHHHHHHHH-------------------HHHHHTCS-S---E
T ss_pred CCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH-------------------HHHHhCCC-c---e
Confidence 4679999999999999999985 357899999999999988876 44434442 2 8
Q ss_pred Eeeecchhhhhh--hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeE
Q 041517 235 PFSSGSALTKLC--EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 235 ~~~~gda~~~L~--~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v 312 (327)
.+..+++.+... ...++||+|+..+-. +....++.+.++|+|||++++-...+ . ...+. .+...+...|+.+
T Consensus 133 ~~~~~d~~~~~~~~~~~~~fD~I~s~a~~---~~~~ll~~~~~~LkpgG~l~~~~g~~-~-~~e~~-~~~~~l~~~G~~~ 206 (249)
T 3g89_A 133 RALWGRAEVLAREAGHREAYARAVARAVA---PLCVLSELLLPFLEVGGAAVAMKGPR-V-EEELA-PLPPALERLGGRL 206 (249)
T ss_dssp EEEECCHHHHTTSTTTTTCEEEEEEESSC---CHHHHHHHHGGGEEEEEEEEEEECSC-C-HHHHT-THHHHHHHHTEEE
T ss_pred EEEECcHHHhhcccccCCCceEEEECCcC---CHHHHHHHHHHHcCCCeEEEEEeCCC-c-HHHHH-HHHHHHHHcCCeE
Confidence 888998877533 234789999998754 33467899999999999888755433 1 12232 3333344556554
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=103.22 Aligned_cols=110 Identities=17% Similarity=0.228 Sum_probs=82.9
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
++..+..+|||||||+|..+..+++. ..+++++|+++.+.+.+++. +...+.. +
T Consensus 17 ~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-------------------~~~~~~~-~ 70 (239)
T 1xxl_A 17 AECRAEHRVLDIGAGAGHTALAFSPY------VQECIGVDATKEMVEVASSF-------------------AQEKGVE-N 70 (239)
T ss_dssp HTCCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHH-------------------HHHHTCC-S
T ss_pred hCcCCCCEEEEEccCcCHHHHHHHHh------CCEEEEEECCHHHHHHHHHH-------------------HHHcCCC-C
Confidence 34456789999999999999998874 35999999999988877652 2222221 2
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ ++..+++||+|+... .|........++++.++|+|||++++.+...
T Consensus 71 ---v~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 71 ---VRFQQGTAES-LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp ---EEEEECBTTB-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ---eEEEeccccc-CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 7777887655 444357899999874 4445667788999999999999999877654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.14 E-value=8.4e-10 Score=93.44 Aligned_cols=122 Identities=15% Similarity=0.079 Sum_probs=89.3
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||+|||+|..+..+++ +..+++++|.++.+.+.+++ |+...+. .+
T Consensus 32 ~~~~~~~vLdiG~G~G~~~~~l~~------~~~~v~~vD~~~~~~~~a~~-------------------~~~~~~~-~~- 84 (183)
T 2yxd_A 32 NLNKDDVVVDVGCGSGGMTVEIAK------RCKFVYAIDYLDGAIEVTKQ-------------------NLAKFNI-KN- 84 (183)
T ss_dssp CCCTTCEEEEESCCCSHHHHHHHT------TSSEEEEEECSHHHHHHHHH-------------------HHHHTTC-CS-
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHh------cCCeEEEEeCCHHHHHHHHH-------------------HHHHcCC-Cc-
Confidence 334567999999999999999886 37899999999998887765 3333333 22
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.+..++..+.++. ++||+|+++.. ......++.+.++ |||++++.+... ....+ +.+.+++.|++
T Consensus 85 --~~~~~~d~~~~~~~--~~~D~i~~~~~---~~~~~~l~~~~~~--~gG~l~~~~~~~----~~~~~-~~~~l~~~g~~ 150 (183)
T 2yxd_A 85 --CQIIKGRAEDVLDK--LEFNKAFIGGT---KNIEKIIEILDKK--KINHIVANTIVL----ENAAK-IINEFESRGYN 150 (183)
T ss_dssp --EEEEESCHHHHGGG--CCCSEEEECSC---SCHHHHHHHHHHT--TCCEEEEEESCH----HHHHH-HHHHHHHTTCE
T ss_pred --EEEEECCccccccC--CCCcEEEECCc---ccHHHHHHHHhhC--CCCEEEEEeccc----ccHHH-HHHHHHHcCCe
Confidence 78888888775543 68999999877 4455778888887 999999988654 33444 44455667777
Q ss_pred EEE
Q 041517 312 VQI 314 (327)
Q Consensus 312 v~~ 314 (327)
+..
T Consensus 151 ~~~ 153 (183)
T 2yxd_A 151 VDA 153 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-10 Score=109.27 Aligned_cols=136 Identities=17% Similarity=0.118 Sum_probs=98.9
Q ss_pred HHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 150 LIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 150 L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
+.+..+ ..+|||+|||+|..++.+|+. +.+|+++|.++.+.+.+++ |+...+..
T Consensus 208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~------ga~V~avDis~~al~~a~~-------------------n~~~ng~~ 262 (393)
T 4dmg_A 208 FEAMVRPGERVLDVYSYVGGFALRAARK------GAYALAVDKDLEALGVLDQ-------------------AALRLGLR 262 (393)
T ss_dssp HHTTCCTTCEEEEESCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHH-------------------HHHHHTCC
T ss_pred HHHHhcCCCeEEEcccchhHHHHHHHHc------CCeEEEEECCHHHHHHHHH-------------------HHHHhCCC
Confidence 334455 679999999999999999984 4569999999999988876 44444543
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC----------CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHH
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF----------NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVR 298 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~----------~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~ 298 (327)
. ++..+|+.+.++.+.+.||+|++|...-. ......++.+.++|+|||++++..+..........
T Consensus 263 ~-----~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~ 337 (393)
T 4dmg_A 263 V-----DIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLL 337 (393)
T ss_dssp C-----EEEESCHHHHHHTCCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHH
T ss_pred C-----cEEEccHHHHHHHhcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 2 34488888877665555999999964300 11235677889999999999987777644444566
Q ss_pred HHHHHHHHHcCCeEEEc
Q 041517 299 RAVNLFAKINGLKVQID 315 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~~~ 315 (327)
+.+...+...|.+++..
T Consensus 338 ~~v~~a~~~~g~~~~i~ 354 (393)
T 4dmg_A 338 EVARRAAADLGRRLRVH 354 (393)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHhCCeEEEE
Confidence 77777777777766543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=110.20 Aligned_cols=110 Identities=16% Similarity=0.045 Sum_probs=85.3
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc-c-CCcc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN-A-IDSV 231 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g-~-~~~v 231 (327)
..+++|||||||+|..+..+++. .+..+|++||+++.+.+.++++.. .+. .+ + ..+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~i~~ar~~~~----------------~~~-~~~~~~~~- 133 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKH----PTVEKAVMVDIDGELVEVAKRHMP----------------EWH-QGAFDDPR- 133 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS----TTCCEEEEEESCHHHHHHHHHHCH----------------HHH-TTGGGCTT-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHhH----------------hhc-cccccCCc-
Confidence 46789999999999999998873 447899999999999998877432 110 11 1 123
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCC---Cc-----HHHHHHHHHccCCCCeEEEEEc
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NS-----AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~-----v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+|+.+.++..+++||+|++|..... .+ ....++.+.++|+|||++++.-
T Consensus 134 --v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 134 --AVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp --EEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred --eEEEEchHHHHHHhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 888999998877666789999999986543 21 3578999999999999999864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-10 Score=107.72 Aligned_cols=130 Identities=11% Similarity=-0.008 Sum_probs=90.0
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
..+++|||||||+|..+..+++. .+..+|++||+++.+.+.++++.. .+. .+. ..+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~----~~~~~v~~vDid~~~~~~a~~~~~----------------~~~-~~~~~~~-- 145 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKH----DSVEKAILCEVDGLVIEAARKYLK----------------QTS-CGFDDPR-- 145 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTS----TTCSEEEEEESCHHHHHHHHHHCH----------------HHH-GGGGCTT--
T ss_pred CCCCEEEEEcCCcCHHHHHHHhc----CCCCEEEEEECCHHHHHHHHHHhH----------------hhc-cccCCCc--
Confidence 35789999999999999998873 346899999999999998887532 110 111 123
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCC-CC-----cHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHD-FN-----SAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~-----~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+++..+|+.+.++..+++||+|++|.... .. .....++.+.++|+|||++++.-.............++.+.+
T Consensus 146 -v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 224 (296)
T 1inl_A 146 -AEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISK 224 (296)
T ss_dssp -EEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHH
T ss_pred -eEEEECcHHHHHhhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHH
Confidence 88999999887766567899999997543 11 124778999999999999999754321112234444555544
Q ss_pred H
Q 041517 307 I 307 (327)
Q Consensus 307 ~ 307 (327)
.
T Consensus 225 ~ 225 (296)
T 1inl_A 225 V 225 (296)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-10 Score=107.55 Aligned_cols=120 Identities=12% Similarity=0.018 Sum_probs=83.6
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..++...++.+|||||||+|..+..+++. +.+|+++|+++.+.+.+++... .
T Consensus 47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~-------------------~ 101 (293)
T 3thr_A 47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERW-------------------N 101 (293)
T ss_dssp HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHH-------------------H
T ss_pred HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHhhh-------------------h
Confidence 34555555557789999999999999999984 5599999999999988866321 0
Q ss_pred hccCCcccceEeeecchhhhhh--hcCCcEeEEEEc--CCCCCCc-------HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLC--EWGVVGDLIEID--AGHDFNS-------AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~--~l~~~fDLIfID--a~h~~~~-------v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+.......+.+..++..+.-. ..+++||+|++- .-+.... ....++.+.++|+|||++++....
T Consensus 102 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 102 RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp TTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccccccceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 0000001126666777655321 235789999985 3333334 677899999999999999987554
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-10 Score=107.00 Aligned_cols=125 Identities=15% Similarity=0.077 Sum_probs=92.5
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||||||.|..+..+++. . ++.+|++||+++.+.+.+++++.. . ...+ +++
T Consensus 91 ~rVLdIG~G~G~la~~la~~---~-p~~~v~~VEidp~vi~~Ar~~~~~-------------------~-~~~r---v~v 143 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADV---Y-PQSRNTVVELDAELARLSREWFDI-------------------P-RAPR---VKI 143 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHH---S-TTCEEEEEESCHHHHHHHHHHSCC-------------------C-CTTT---EEE
T ss_pred CEEEEEECCcCHHHHHHHHH---C-CCcEEEEEECCHHHHHHHHHhccc-------------------c-CCCc---eEE
Confidence 49999999999999999984 2 467999999999999998875421 0 1123 889
Q ss_pred eecchhhhhhhc-CCcEeEEEEcCCCCCC-c----HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 237 SSGSALTKLCEW-GVVGDLIEIDAGHDFN-S----AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 237 ~~gda~~~L~~l-~~~fDLIfIDa~h~~~-~----v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
..+|+.+.+... +++||+|++|...... + ..+.++.+.++|+|||++++.-... ......+..+..+.+..+
T Consensus 144 ~~~Da~~~l~~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~-~~~~~~~~~~~tL~~vF~ 221 (317)
T 3gjy_A 144 RVDDARMVAESFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDH-SDLRGAKSELAGMMEVFE 221 (317)
T ss_dssp EESCHHHHHHTCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEEC-TTCHHHHHHHHHHHHHCS
T ss_pred EECcHHHHHhhccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCC-cchHHHHHHHHHHHHHCC
Confidence 999999887655 4789999999754321 1 2578999999999999999877643 333445555555555443
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.3e-11 Score=105.59 Aligned_cols=115 Identities=18% Similarity=0.024 Sum_probs=81.1
Q ss_pred HHHHHHhh--cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDK--VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~--~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
++..+... .+..+|||||||+|..+..+++. + ..+|+++|+++.+.+.+++.. .
T Consensus 49 ~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~----~-~~~v~gvD~s~~~l~~a~~~~-------------------~ 104 (236)
T 1zx0_A 49 YMHALAAAASSKGGRVLEVGFGMAIAASKVQEA----P-IDEHWIIECNDGVFQRLRDWA-------------------P 104 (236)
T ss_dssp HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTS----C-EEEEEEEECCHHHHHHHHHHG-------------------G
T ss_pred HHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhc----C-CCeEEEEcCCHHHHHHHHHHH-------------------H
Confidence 44444443 24579999999999999999762 2 348999999999998887632 1
Q ss_pred hhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCC-Cc-----HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDF-NS-----AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~-~~-----v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
..+ .+ +.+..++..+.+..+ +++||+|+.|..... .. ....++++.++|||||++++.++.
T Consensus 105 ~~~--~~---v~~~~~d~~~~~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 105 RQT--HK---VIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp GCS--SE---EEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred hcC--CC---eEEEecCHHHhhcccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 112 12 888899988754333 478999999643211 11 113488999999999999987754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=103.87 Aligned_cols=129 Identities=13% Similarity=-0.020 Sum_probs=92.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++++|||||||+|..+..+++ .+.+|+++|+++.+.+.+++.. ...+...+ +
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~~-------------------~~~~~~~~---v 117 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS------PERFVVGLDISESALAKANETY-------------------GSSPKAEY---F 117 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB------TTEEEEEECSCHHHHHHHHHHH-------------------TTSGGGGG---E
T ss_pred CCCCEEEeCCCCCHHHHHHHh------CCCeEEEEECCHHHHHHHHHHh-------------------hccCCCcc---e
Confidence 467999999999999998875 2789999999999888776632 21122222 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCC--cHHHHHHHHHccCCCCeEEEEEcCCCCCC-----chhHHHHHHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFN--SAWADINRAWRILRPGGVIFGHDYFTAAD-----NRGVRRAVNLFAK 306 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~--~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-----~~GV~~Av~~f~~ 306 (327)
.+..++..+.. .+.+||+|+.-.. +..+ .....++.+.++|+|||++++.++..... +.--.+.+..++.
T Consensus 118 ~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (235)
T 3lcc_A 118 SFVKEDVFTWR--PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLV 195 (235)
T ss_dssp EEECCCTTTCC--CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHG
T ss_pred EEEECchhcCC--CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHH
Confidence 88888877632 2468999997544 3223 56678999999999999999887754211 1113466777778
Q ss_pred HcCCeEE
Q 041517 307 INGLKVQ 313 (327)
Q Consensus 307 ~~gl~v~ 313 (327)
..|+++.
T Consensus 196 ~~Gf~~~ 202 (235)
T 3lcc_A 196 PIGFKAV 202 (235)
T ss_dssp GGTEEEE
T ss_pred HcCCeEE
Confidence 8888764
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-10 Score=113.67 Aligned_cols=142 Identities=9% Similarity=0.069 Sum_probs=103.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..++...+..+|||+|||.|..|+.+|+. ++..++|+++|+++.+.+.+++ |+..
T Consensus 95 ~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~---~~~~g~V~AvDis~~rl~~~~~-------------------n~~r 152 (456)
T 3m4x_A 95 MIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQ---MKGKGLLVTNEIFPKRAKILSE-------------------NIER 152 (456)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHH---HTTCSEEEEECSSHHHHHHHHH-------------------HHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHH---cCCCCEEEEEeCCHHHHHHHHH-------------------HHHH
Confidence 35555555556789999999999999999986 4556899999999988877765 5555
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcH-----------------------HHHHHHHHccCCCCe
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSA-----------------------WADINRAWRILRPGG 281 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v-----------------------~~dl~~~~~lL~pGG 281 (327)
.|.. . |.+..+|+.+....++++||+|++|+..+...+ ...++.++++|+|||
T Consensus 153 ~g~~-n---v~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG 228 (456)
T 3m4x_A 153 WGVS-N---AIVTNHAPAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKG 228 (456)
T ss_dssp HTCS-S---EEEECCCHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred cCCC-c---eEEEeCCHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5553 2 778888887754445689999999975321111 156889999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
+|+...+...+ ..=.+-|..|.+++++++.+
T Consensus 229 ~LvYsTCs~~~--eEne~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 229 QLIYSTCTFAP--EENEEIISWLVENYPVTIEE 259 (456)
T ss_dssp EEEEEESCCCG--GGTHHHHHHHHHHSSEEEEC
T ss_pred EEEEEEeeccc--ccCHHHHHHHHHhCCCEEEe
Confidence 99998886632 22345567777777766654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=106.11 Aligned_cols=117 Identities=10% Similarity=0.116 Sum_probs=83.6
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+++|||||||+|..+..+++ . +..+|++||+++.+.+.++++.. ...+ +.+....+...+
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~----~-~~~~v~~vDid~~~i~~ar~~~~--~~~~--------l~~~~~~~~~~~-- 135 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQ----H-DVDEVIMVEIDEDVIMVSKDLIK--IDNG--------LLEAMLNGKHEK-- 135 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT----S-CCSEEEEEESCHHHHHHHHHHTC--TTTT--------HHHHHHTTCCSS--
T ss_pred CCCCCeEEEEcCCcCHHHHHHHh----C-CCCEEEEEECCHHHHHHHHHHHh--hccc--------cccccccCCCCc--
Confidence 34678999999999999999887 3 46899999999999998887431 0000 000000001223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+++..+|+.+.+.. +++||+|++|......+ ....++.+.++|+|||++++...
T Consensus 136 -v~~~~~D~~~~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 194 (281)
T 1mjf_A 136 -AKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG 194 (281)
T ss_dssp -EEEEESCHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -EEEEECchHHHhcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 88899999887766 78899999998642211 24678999999999999999743
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=105.99 Aligned_cols=134 Identities=15% Similarity=0.088 Sum_probs=91.5
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++++|||||||.|..+..+++ ..+..+|++||+++.+.+.++++.. .+.......+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~----~~~~~~v~~vDid~~~i~~a~~~~~----------------~~~~~~~~~~--- 150 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLR----HGTVEHCDLVDIDGEVMEQSKQHFP----------------QISRSLADPR--- 150 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHT----CTTCCEEEEEESCHHHHHHHHHHCH----------------HHHGGGGCTT---
T ss_pred CCCCeEEEEcCCCCHHHHHHHh----CCCCCEEEEEECCHHHHHHHHHHhH----------------HhhcccCCCc---
Confidence 3578999999999999999987 3456899999999999988877431 1111111223
Q ss_pred eEeeecchhhhhhh-cCCcEeEEEEcCCCCCCcH-----HHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 234 VPFSSGSALTKLCE-WGVVGDLIEIDAGHDFNSA-----WADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 234 V~~~~gda~~~L~~-l~~~fDLIfIDa~h~~~~v-----~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
+++..+|+.+.+.. .+++||+|++|......+. ...++.+.+.|+|||++++....... .....+.+...++.
T Consensus 151 v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~-~~~~~~~~~~~l~~ 229 (304)
T 3bwc_A 151 ATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL-DLELIEKMSRFIRE 229 (304)
T ss_dssp EEEEESCHHHHHHSSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT-CHHHHHHHHHHHHH
T ss_pred EEEEECcHHHHHHhccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc-chHHHHHHHHHHHh
Confidence 88889998886654 3578999999976433211 47789999999999999987443211 12233445555566
Q ss_pred cCCe
Q 041517 308 NGLK 311 (327)
Q Consensus 308 ~gl~ 311 (327)
.|+.
T Consensus 230 ~GF~ 233 (304)
T 3bwc_A 230 TGFA 233 (304)
T ss_dssp HTCS
T ss_pred CCCC
Confidence 6664
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3e-10 Score=105.61 Aligned_cols=115 Identities=10% Similarity=0.002 Sum_probs=86.6
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+..+++.. +..+|||||||+|..+..+++. . +.+|+++|+++.+.+.+++ +
T Consensus 59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~---~--~~~v~gvD~s~~~~~~a~~-------------------~ 114 (302)
T 3hem_A 59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAE---Y--DVNVIGLTLSENQYAHDKA-------------------M 114 (302)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH---H--CCEEEEEECCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHh---C--CCEEEEEECCHHHHHHHHH-------------------H
Confidence 3455555543 3469999999999999999985 2 3789999999999888766 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CC---------CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DF---------NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~---------~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...++.++ +.+..++..+. +++||+|+..... .. ......++.+.++|+|||++++.++..
T Consensus 115 ~~~~~~~~~---v~~~~~d~~~~----~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 115 FDEVDSPRR---KEVRIQGWEEF----DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp HHHSCCSSC---EEEEECCGGGC----CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred HHhcCCCCc---eEEEECCHHHc----CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 333454444 88888887653 6899999986432 11 223578999999999999999999865
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=9.3e-10 Score=107.05 Aligned_cols=131 Identities=12% Similarity=0.042 Sum_probs=96.5
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC-ccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID-SVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~-~v~ 232 (327)
.+..+|||+|||+|..++.+|+. + ..+|+++|.++.+.+.|++ |+...++.+ +
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~----g-a~~V~~vD~s~~al~~A~~-------------------N~~~n~~~~~~-- 264 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMG----G-AMATTSVDLAKRSRALSLA-------------------HFEANHLDMAN-- 264 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHT----T-BSEEEEEESCTTHHHHHHH-------------------HHHHTTCCCTT--
T ss_pred cCCCeEEEEeeccCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHH-------------------HHHHcCCCccc--
Confidence 45689999999999999999973 1 3589999999999998877 444445433 3
Q ss_pred ceEeeecchhhhhhhc---CCcEeEEEEcCCC------CCCcHHHH----HHHHHccCCCCeEEEEEcCCCCCCchhHHH
Q 041517 233 PVPFSSGSALTKLCEW---GVVGDLIEIDAGH------DFNSAWAD----INRAWRILRPGGVIFGHDYFTAADNRGVRR 299 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l---~~~fDLIfIDa~h------~~~~v~~d----l~~~~~lL~pGGvIi~dD~~~~~~~~GV~~ 299 (327)
+++..+|+.+.++.+ +.+||+|++|... .......+ ++.+.++|+|||++++.............+
T Consensus 265 -v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 343 (385)
T 2b78_A 265 -HQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKK 343 (385)
T ss_dssp -EEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred -eEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHH
Confidence 889999998877654 4689999999432 12233333 456689999999999887765433344666
Q ss_pred HHHHHHHHcCCe
Q 041517 300 AVNLFAKINGLK 311 (327)
Q Consensus 300 Av~~f~~~~gl~ 311 (327)
.+.+.+...|.+
T Consensus 344 ~i~~~~~~~g~~ 355 (385)
T 2b78_A 344 QIEKGFGKQKHT 355 (385)
T ss_dssp HHHHHHTTCCCE
T ss_pred HHHHHHHHcCCc
Confidence 777777777766
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=107.49 Aligned_cols=107 Identities=11% Similarity=-0.044 Sum_probs=82.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||||||+|..+..+++.. +.+|+++|+++.+.+.+++ ++...++.++ +.
T Consensus 118 ~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~-------------------~~~~~~~~~~---v~ 170 (312)
T 3vc1_A 118 DDTLVDAGCGRGGSMVMAHRRF-----GSRVEGVTLSAAQADFGNR-------------------RARELRIDDH---VR 170 (312)
T ss_dssp TCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHH-------------------HHHHTTCTTT---EE
T ss_pred CCEEEEecCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHH-------------------HHHHcCCCCc---eE
Confidence 5799999999999999999852 5799999999998887766 3333444444 88
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..++..+ ++..++.||+|+......+-+....++.+.++|+|||++++.+...
T Consensus 171 ~~~~d~~~-~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 171 SRVCNMLD-TPFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp EEECCTTS-CCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEECChhc-CCCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence 88888765 3333579999997654333347789999999999999999887655
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=102.19 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=79.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. .++.+++++|+++.+.+.+++... ..+ + +
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~-------------------~~~---~---~ 94 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEK----YPEATFTLVDMSEKMLEIAKNRFR-------------------GNL---K---V 94 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHHTC-------------------SCT---T---E
T ss_pred CCCeEEEecCCCCHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHhhc-------------------cCC---C---E
Confidence 4689999999999999999985 357899999999998887766321 111 2 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC-CcH--HHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSA--WADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v--~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+... .++||+|+......+ ... ...++++.+.|+|||++++.|...
T Consensus 95 ~~~~~d~~~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 151 (234)
T 3dtn_A 95 KYIEADYSKYDF--EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH 151 (234)
T ss_dssp EEEESCTTTCCC--CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred EEEeCchhccCC--CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence 888888766322 278999998754322 222 247999999999999999988765
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.3e-10 Score=105.26 Aligned_cols=131 Identities=11% Similarity=-0.005 Sum_probs=99.1
Q ss_pred HHHHHhhcCC-CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 147 FGNLIDKVRP-RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 147 L~~L~~~~~p-~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
|+.+.+..++ .+|+|||||+|+.++.+|.. ++..+|+++|+++++.+.|++ |+...
T Consensus 12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~----~~~~~V~avDi~~~al~~A~~-------------------N~~~~ 68 (244)
T 3gnl_A 12 LEKVASYITKNERIADIGSDHAYLPCFAVKN----QTASFAIAGEVVDGPFQSAQK-------------------QVRSS 68 (244)
T ss_dssp HHHHHTTCCSSEEEEEETCSTTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHHhCCCCCEEEEECCccHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHH-------------------HHHHc
Confidence 4555555554 58999999999999999983 557799999999999998876 66666
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
|+.++ |.+..+|..+.+.. +.+||+|++-+.- .+-...-++.+.+.|++++.+|+.-.. | ...+..++
T Consensus 69 gl~~~---I~v~~gD~l~~~~~-~~~~D~IviagmG-g~lI~~IL~~~~~~L~~~~~lIlq~~~------~-~~~lr~~L 136 (244)
T 3gnl_A 69 GLTEQ---IDVRKGNGLAVIEK-KDAIDTIVIAGMG-GTLIRTILEEGAAKLAGVTKLILQPNI------A-AWQLREWS 136 (244)
T ss_dssp TCTTT---EEEEECSGGGGCCG-GGCCCEEEEEEEC-HHHHHHHHHHTGGGGTTCCEEEEEESS------C-HHHHHHHH
T ss_pred CCCce---EEEEecchhhccCc-cccccEEEEeCCc-hHHHHHHHHHHHHHhCCCCEEEEEcCC------C-hHHHHHHH
Confidence 76666 89999998886532 2359999984332 234566788999999999999986543 2 35666677
Q ss_pred HHcCCeE
Q 041517 306 KINGLKV 312 (327)
Q Consensus 306 ~~~gl~v 312 (327)
.++|+.+
T Consensus 137 ~~~Gf~i 143 (244)
T 3gnl_A 137 EQNNWLI 143 (244)
T ss_dssp HHHTEEE
T ss_pred HHCCCEE
Confidence 7788876
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.3e-10 Score=107.37 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=94.2
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc---c
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN---A 227 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g---~ 227 (327)
+...+..+|||||||+|+.++.+++. .++.++|+++|.++.+.+.++++.. .+-......+ .
T Consensus 101 l~~~~g~~VLDiG~G~G~~~~~la~~---~g~~~~v~~vD~~~~~~~~a~~~~~------------~~~~~~~ln~~~~~ 165 (336)
T 2b25_A 101 MDINPGDTVLEAGSGSGGMSLFLSKA---VGSQGRVISFEVRKDHHDLAKKNYK------------HWRDSWKLSHVEEW 165 (336)
T ss_dssp HTCCTTCEEEEECCTTSHHHHHHHHH---HCTTCEEEEEESSHHHHHHHHHHHH------------HHHHHHTTTCSSCC
T ss_pred cCCCCCCEEEEeCCCcCHHHHHHHHH---hCCCceEEEEeCCHHHHHHHHHHHH------------Hhhccccccccccc
Confidence 34455679999999999999999985 4667999999999999888876321 0000000001 1
Q ss_pred CCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 228 IDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
.++ +.+..+|..+.+..+ +++||+|++|..... ..++.+.+.|+|||++++-... ...+.+.++.+.+
T Consensus 166 ~~~---v~~~~~d~~~~~~~~~~~~fD~V~~~~~~~~----~~l~~~~~~LkpgG~lv~~~~~----~~~~~~~~~~l~~ 234 (336)
T 2b25_A 166 PDN---VDFIHKDISGATEDIKSLTFDAVALDMLNPH----VTLPVFYPHLKHGGVCAVYVVN----ITQVIELLDGIRT 234 (336)
T ss_dssp CCC---EEEEESCTTCCC-------EEEEEECSSSTT----TTHHHHGGGEEEEEEEEEEESS----HHHHHHHHHHHHH
T ss_pred CCc---eEEEECChHHcccccCCCCeeEEEECCCCHH----HHHHHHHHhcCCCcEEEEEeCC----HHHHHHHHHHHHh
Confidence 123 888888877643222 357999999865422 4689999999999999975543 3456677766654
Q ss_pred H-cCCe----EEEccceEEEe
Q 041517 307 I-NGLK----VQIDGQHWVIH 322 (327)
Q Consensus 307 ~-~gl~----v~~~gq~w~i~ 322 (327)
. .++. .......|.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~w~~~ 255 (336)
T 2b25_A 235 CELALSCEKISEVIVRDWLVC 255 (336)
T ss_dssp HTCCEEEEEEECCCCCCEEEC
T ss_pred cCCCcccceEEEecccceEEE
Confidence 3 3322 22345667653
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.7e-10 Score=107.26 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=100.4
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
..+.+..+..+|||+|||+|..++.+|+. + ..+|+++|+++.+.+.+++ |+...+.
T Consensus 213 ~~l~~~~~~~~VLDl~cG~G~~sl~la~~----g-~~~V~~vD~s~~al~~a~~-------------------n~~~ngl 268 (396)
T 3c0k_A 213 LATRRYVENKRVLNCFSYTGGFAVSALMG----G-CSQVVSVDTSQEALDIARQ-------------------NVELNKL 268 (396)
T ss_dssp HHHHHHCTTCEEEEESCTTCSHHHHHHHT----T-CSEEEEEESCHHHHHHHHH-------------------HHHHTTC
T ss_pred HHHHHhhCCCeEEEeeccCCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHH-------------------HHHHcCC
Confidence 33444456789999999999999999983 2 4699999999999888876 4444344
Q ss_pred -CCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCC----------CCcHHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 228 -IDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHD----------FNSAWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 228 -~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~----------~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
.++ +.+..+|+.+.++.+ +.+||+|++|...- .......+..+.++|+|||++++........
T Consensus 269 ~~~~---v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 345 (396)
T 3c0k_A 269 DLSK---AEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMT 345 (396)
T ss_dssp CGGG---EEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCC
T ss_pred Cccc---eEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC
Confidence 323 889999998876643 47899999995320 1334467888999999999999877665333
Q ss_pred chhHHHHHHHHHHHcCCeEEE
Q 041517 294 NRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 294 ~~GV~~Av~~f~~~~gl~v~~ 314 (327)
...-.+.+.+.+...|.++..
T Consensus 346 ~~~~~~~i~~~~~~~g~~~~~ 366 (396)
T 3c0k_A 346 SDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_dssp HHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHcCCeEEE
Confidence 224456666666667755543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.3e-10 Score=98.98 Aligned_cols=125 Identities=18% Similarity=0.073 Sum_probs=86.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..++.+|+. .++.++++||+++.+.+.+++ |+...+.. + +
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~----~p~~~v~giD~s~~~l~~a~~-------------------~~~~~~~~-n---v 90 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQ----NPDINYIGIELFKSVIVTAVQ-------------------KVKDSEAQ-N---V 90 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHH----CTTSEEEEECSCHHHHHHHHH-------------------HHHHSCCS-S---E
T ss_pred CCceEEEEecCCCHHHHHHHHH----CCCCCEEEEEechHHHHHHHH-------------------HHHHcCCC-C---E
Confidence 4679999999999999999985 457899999999999888766 33333331 2 8
Q ss_pred Eeeecchhhhhhh-c-CCcEeEEEEcCCCCCCc---------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 235 PFSSGSALTKLCE-W-GVVGDLIEIDAGHDFNS---------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 235 ~~~~gda~~~L~~-l-~~~fDLIfIDa~h~~~~---------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
.+..+|+.+ ++. + ++.||.|++...-.+.. ....++.+.++|+|||++++..-. ....+.+.+
T Consensus 91 ~~~~~d~~~-l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~-----~~~~~~~~~ 164 (213)
T 2fca_A 91 KLLNIDADT-LTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN-----RGLFEYSLK 164 (213)
T ss_dssp EEECCCGGG-HHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC-----HHHHHHHHH
T ss_pred EEEeCCHHH-HHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC-----HHHHHHHHH
Confidence 888898877 332 2 46899999864322111 236789999999999998875321 233334444
Q ss_pred HHHHcCCeE
Q 041517 304 FAKINGLKV 312 (327)
Q Consensus 304 f~~~~gl~v 312 (327)
.+...|+.+
T Consensus 165 ~~~~~g~~~ 173 (213)
T 2fca_A 165 SFSEYGLLL 173 (213)
T ss_dssp HHHHHTCEE
T ss_pred HHHHCCCcc
Confidence 445557654
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.3e-10 Score=112.32 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=101.3
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..++...+..+|||+|||.|..|+.+|+. ++..++|+++|+++.+.+.+++ |+..
T Consensus 91 ~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~---~~~~g~V~AvDis~~~l~~a~~-------------------n~~r 148 (464)
T 3m6w_A 91 QAVGVLLDPKPGERVLDLAAAPGGKTTHLAAR---MGGKGLLLANEVDGKRVRGLLE-------------------NVER 148 (464)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHH---TTTCSEEEEECSCHHHHHHHHH-------------------HHHH
T ss_pred HHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------HHHH
Confidence 35555555556789999999999999999985 4556899999999988887765 5555
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC-------c----------------HHHHHHHHHccCCCCe
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN-------S----------------AWADINRAWRILRPGG 281 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~-------~----------------v~~dl~~~~~lL~pGG 281 (327)
.|.. |.+..+|+.+.....+++||+|++|+-.... . ....++.+.++|+|||
T Consensus 149 ~G~~-----v~~~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG 223 (464)
T 3m6w_A 149 WGAP-----LAVTQAPPRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGG 223 (464)
T ss_dssp HCCC-----CEEECSCHHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred cCCe-----EEEEECCHHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5542 6777888877543457899999999653211 1 1457889999999999
Q ss_pred EEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEEE
Q 041517 282 VIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQI 314 (327)
Q Consensus 282 vIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~~ 314 (327)
+|+...+...+ ..=.+.+..|.+.+ ++++.+
T Consensus 224 ~LvysTCs~~~--eEne~vv~~~l~~~~~~~l~~ 255 (464)
T 3m6w_A 224 VLVYSTCTFAP--EENEGVVAHFLKAHPEFRLED 255 (464)
T ss_dssp EEEEEESCCCG--GGTHHHHHHHHHHCTTEEEEC
T ss_pred EEEEEeccCch--hcCHHHHHHHHHHCCCcEEEe
Confidence 99998887632 22234456666655 566554
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=105.71 Aligned_cols=109 Identities=17% Similarity=0.104 Sum_probs=83.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++.. +.+++++|+++.+.+.+++ ++...+..++
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~-------------------~~~~~~~~~~--- 133 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF-----GVSIDCLNIAPVQNKRNEE-------------------YNNQAGLADN--- 133 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHH-------------------HHHHHTCTTT---
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh-----CCEEEEEeCCHHHHHHHHH-------------------HHHhcCCCcc---
Confidence 346799999999999999999852 4699999999998887765 2333344344
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ ++..+++||+|+.... +........++++.+.|+|||++++.+...
T Consensus 134 ~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 134 ITVKYGSFLE-IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp EEEEECCTTS-CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred eEEEEcCccc-CCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 7888887765 3433578999997643 334556788999999999999999988754
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-10 Score=101.99 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=80.6
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+....++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++.. ...
T Consensus 42 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~-------------------~~~ 96 (216)
T 3ofk_A 42 LLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH------CKRLTVIDVMPRAIGRACQRT-------------------KRW 96 (216)
T ss_dssp HHHHHTTTSSEEEEEEECCTTSHHHHHHGGG------EEEEEEEESCHHHHHHHHHHT-------------------TTC
T ss_pred HHHHHcccCCCCcEEEEcCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhc-------------------ccC
Confidence 4444444445679999999999999999874 469999999999888776632 111
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-CcH---HHHHHHHHccCCCCeEEEEEcC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSA---WADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v---~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+ + +.+..++..+.. .+++||+|+......+ ... ...++.+.++|+|||++++.+.
T Consensus 97 ~---~---~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 97 S---H---ISWAATDILQFS--TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp S---S---EEEEECCTTTCC--CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred C---C---eEEEEcchhhCC--CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 1 2 788888876643 3589999998754322 222 4669999999999999998653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=101.82 Aligned_cols=112 Identities=16% Similarity=0.075 Sum_probs=80.2
Q ss_pred HHHHHHHh-hcCCCEEEEEcCcchHHHHHHHHHhccCC----CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 145 AVFGNLID-KVRPRVIIEVGSFLGASALHMANLTRQLG----LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 145 ~lL~~L~~-~~~p~~VLEIGt~~G~Sal~lA~a~r~l~----~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.++..|.. ..+..+|||||||+|+.+..+++. .+ +.++|+++|.++.+.+.++++
T Consensus 69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~---~~~~~~~~~~v~~vD~~~~~~~~a~~~----------------- 128 (227)
T 2pbf_A 69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIK---MNVLENKNSYVIGLERVKDLVNFSLEN----------------- 128 (227)
T ss_dssp HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHH---TTTTTCTTCEEEEEESCHHHHHHHHHH-----------------
T ss_pred HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHH---hcccCCCCCEEEEEeCCHHHHHHHHHH-----------------
Confidence 45555542 234579999999999999999985 33 567999999999988887663
Q ss_pred HHHhhhcc----CCcccceEeeecchhhhhh---hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 220 QNVIYQNA----IDSVLPVPFSSGSALTKLC---EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 220 ~nv~~~g~----~~~v~~V~~~~gda~~~L~---~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+...+. ..+ +.+..++..+.++ ...++||+|++++.... .++.+.++|+|||++++.
T Consensus 129 --~~~~~~~~~~~~~---v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~-----~~~~~~~~LkpgG~lv~~ 192 (227)
T 2pbf_A 129 --IKRDKPELLKIDN---FKIIHKNIYQVNEEEKKELGLFDAIHVGASASE-----LPEILVDLLAENGKLIIP 192 (227)
T ss_dssp --HHHHCGGGGSSTT---EEEEECCGGGCCHHHHHHHCCEEEEEECSBBSS-----CCHHHHHHEEEEEEEEEE
T ss_pred --HHHcCccccccCC---EEEEECChHhcccccCccCCCcCEEEECCchHH-----HHHHHHHhcCCCcEEEEE
Confidence 222221 122 7888888776431 12468999999976532 247889999999998875
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.8e-10 Score=98.12 Aligned_cols=126 Identities=18% Similarity=0.111 Sum_probs=88.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..++.+|+. .++.++++||+++.+.+.+++ |+...+. .+ +
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~----~p~~~v~gvD~s~~~l~~a~~-------------------~~~~~~~-~~---v 93 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQ----NPDINYIGIDIQKSVLSYALD-------------------KVLEVGV-PN---I 93 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHH-------------------HHHHHCC-SS---E
T ss_pred CCCeEEEEccCcCHHHHHHHHH----CCCCCEEEEEcCHHHHHHHHH-------------------HHHHcCC-CC---E
Confidence 4679999999999999999985 347899999999999887766 3333333 22 8
Q ss_pred Eeeecchhhhhhh-c-CCcEeEEEEcCCCCCCc---------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 235 PFSSGSALTKLCE-W-GVVGDLIEIDAGHDFNS---------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 235 ~~~~gda~~~L~~-l-~~~fDLIfIDa~h~~~~---------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
.+..+++.+ ++. + ++.||+|+++....+.. ....++.+.++|+|||++++..-. ....+.+.+
T Consensus 94 ~~~~~d~~~-~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~~~~~ 167 (214)
T 1yzh_A 94 KLLWVDGSD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN-----RGLFEYSLV 167 (214)
T ss_dssp EEEECCSSC-GGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC-----HHHHHHHHH
T ss_pred EEEeCCHHH-HHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC-----HHHHHHHHH
Confidence 888888776 332 2 46899999985422111 136789999999999998874321 233344444
Q ss_pred HHHHcCCeEE
Q 041517 304 FAKINGLKVQ 313 (327)
Q Consensus 304 f~~~~gl~v~ 313 (327)
.+...|+++.
T Consensus 168 ~~~~~g~~~~ 177 (214)
T 1yzh_A 168 SFSQYGMKLN 177 (214)
T ss_dssp HHHHHTCEEE
T ss_pred HHHHCCCeee
Confidence 5556677654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-10 Score=103.41 Aligned_cols=140 Identities=11% Similarity=0.076 Sum_probs=96.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..++...+..+|||+|||+|..+..+++. ++..++|+++|.++.+.+.+++ |+...
T Consensus 74 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~---~~~~~~v~avD~~~~~l~~~~~-------------------~~~~~ 131 (274)
T 3ajd_A 74 IPPIVLNPREDDFILDMCAAPGGKTTHLAQL---MKNKGTIVAVEISKTRTKALKS-------------------NINRM 131 (274)
T ss_dssp HHHHHHCCCTTCEEEETTCTTCHHHHHHHHH---TTTCSEEEEEESCHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHhCCCCcCEEEEeCCCccHHHHHHHHH---cCCCCEEEEECCCHHHHHHHHH-------------------HHHHh
Confidence 4444555445679999999999999999985 3335899999999988877665 44444
Q ss_pred ccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCC-------------------CcHHHHHHHHHccCCCCeEE
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDF-------------------NSAWADINRAWRILRPGGVI 283 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~-------------------~~v~~dl~~~~~lL~pGGvI 283 (327)
|.. + +.+..+|+.+....+ .++||+|++|+.... ......++.+.++|+|||++
T Consensus 132 g~~-~---v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 207 (274)
T 3ajd_A 132 GVL-N---TIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGEL 207 (274)
T ss_dssp TCC-S---EEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEE
T ss_pred CCC-c---EEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 432 2 888888887754322 578999999943221 12346789999999999999
Q ss_pred EEEcCCCCCCchhHHHHHHHHHHH-cCCeEE
Q 041517 284 FGHDYFTAADNRGVRRAVNLFAKI-NGLKVQ 313 (327)
Q Consensus 284 i~dD~~~~~~~~GV~~Av~~f~~~-~gl~v~ 313 (327)
++..+...+. .-.+.++.|.+. .++++.
T Consensus 208 v~stcs~~~~--ene~~v~~~l~~~~~~~~~ 236 (274)
T 3ajd_A 208 VYSTCSMEVE--ENEEVIKYILQKRNDVELI 236 (274)
T ss_dssp EEEESCCCTT--SSHHHHHHHHHHCSSEEEE
T ss_pred EEEECCCChH--HhHHHHHHHHHhCCCcEEe
Confidence 9988765321 113445555544 345544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.11 E-value=7.4e-10 Score=107.67 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=101.2
Q ss_pred HHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc
Q 041517 148 GNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN 226 (327)
Q Consensus 148 ~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g 226 (327)
..+.+.. +..+|||+|||+|..++.+|+. + ..+|+++|.++.+.+.+++ |+...+
T Consensus 209 ~~~~~~~~~~~~VLDl~~G~G~~~~~la~~----g-~~~v~~vD~s~~~l~~a~~-------------------n~~~n~ 264 (396)
T 2as0_A 209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIA----G-ADEVIGIDKSPRAIETAKE-------------------NAKLNG 264 (396)
T ss_dssp HHHGGGCCTTCEEEETTCTTTHHHHHHHHT----T-CSEEEEEESCHHHHHHHHH-------------------HHHHTT
T ss_pred HHHHHHhhCCCeEEEecCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHH-------------------HHHHcC
Confidence 3344445 5789999999999999999983 2 4699999999999888876 444334
Q ss_pred cCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCC----------CcHHHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 227 AIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDF----------NSAWADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 227 ~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~----------~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
+.++ +.+..+|+.+.++.+ +.+||+|++|...-. ......+..+.++|+|||+|++..+.....
T Consensus 265 ~~~~---v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~ 341 (396)
T 2as0_A 265 VEDR---MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD 341 (396)
T ss_dssp CGGG---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC
T ss_pred CCcc---ceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCC
Confidence 4323 889999988876543 578999999954211 123456788999999999999888765433
Q ss_pred chhHHHHHHHHHHHcCCeEEEcc
Q 041517 294 NRGVRRAVNLFAKINGLKVQIDG 316 (327)
Q Consensus 294 ~~GV~~Av~~f~~~~gl~v~~~g 316 (327)
.....+.+.+.+...+.+++...
T Consensus 342 ~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 342 LQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESS
T ss_pred HHHHHHHHHHHHHHcCCeEEEEe
Confidence 33355666666666776665443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.1e-10 Score=105.07 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=94.4
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||+|||+|..++.+|+. .+.++|+++|.++.+.+.+++ |+...+.. .
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~----~~~~~V~~vD~s~~av~~a~~-------------------n~~~n~l~-~--- 170 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKY----SKPKLVYAIEKNPTAYHYLCE-------------------NIKLNKLN-N--- 170 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHH----TCCSEEEEEECCHHHHHHHHH-------------------HHHHTTCS-S---
T ss_pred CCCCEEEEecCcCCHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHcCCC-C---
Confidence 34679999999999999999985 236799999999999888776 44433432 2
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCc-hhHHHHHHHHHHHcCCeE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN-RGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~-~GV~~Av~~f~~~~gl~v 312 (327)
+.+..+|+.+. +. +..||+|++|... .....++.+.+.|+|||++++.+....... ....+.++.+.+..+.++
T Consensus 171 ~~~~~~d~~~~-~~-~~~~D~Vi~d~p~---~~~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (272)
T 3a27_A 171 VIPILADNRDV-EL-KDVADRVIMGYVH---KTHKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAEKNGYKL 245 (272)
T ss_dssp EEEEESCGGGC-CC-TTCEEEEEECCCS---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHHHTTEEE
T ss_pred EEEEECChHHc-Cc-cCCceEEEECCcc---cHHHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHHHhCCee
Confidence 67888988875 43 5789999999764 233578899999999999998877652221 235566777776665554
Q ss_pred E
Q 041517 313 Q 313 (327)
Q Consensus 313 ~ 313 (327)
.
T Consensus 246 ~ 246 (272)
T 3a27_A 246 I 246 (272)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-10 Score=105.37 Aligned_cols=112 Identities=14% Similarity=0.050 Sum_probs=85.5
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~ 232 (327)
.++++|||||||.|..+..+++ ..+..++++||+++.+.+.++++.. ... .++ ..+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~----~~~~~~v~~vDid~~~i~~a~~~~~----------------~~~-~~~~~~~-- 133 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCK----YKSVENIDICEIDETVIEVSKIYFK----------------NIS-CGYEDKR-- 133 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTT----CTTCCEEEEEESCHHHHHHHHHHCT----------------TTS-GGGGSTT--
T ss_pred CCCCeEEEEeCCcCHHHHHHHH----cCCCCEEEEEECCHHHHHHHHHHhH----------------Hhc-cccCCCc--
Confidence 3578999999999999999886 3457899999999999998887542 000 011 123
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcH-----HHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSA-----WADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v-----~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+++..+|+.+.++..+++||+|++|......+. ...++.+.+.|+|||++++....
T Consensus 134 -v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 194 (283)
T 2i7c_A 134 -VNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES 194 (283)
T ss_dssp -EEEEESCHHHHHHHCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred -EEEEECChHHHHHhCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence 888999998877665789999999975432111 47899999999999999998653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.8e-10 Score=97.20 Aligned_cols=109 Identities=15% Similarity=0.027 Sum_probs=79.9
Q ss_pred HHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 149 NLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 149 ~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
.++...++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++. +...+..
T Consensus 26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-------------------~~~~~~~ 80 (199)
T 2xvm_A 26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN------GYDVDAWDKNAMSIANVERI-------------------KSIENLD 80 (199)
T ss_dssp HHTTTSCSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHH-------------------HHHHTCT
T ss_pred HHhhccCCCeEEEEcCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHH-------------------HHhCCCC
Confidence 3345557889999999999999999984 57999999999988877652 2222221
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
. +.+..++..+. +. +++||+|+......+ +.....++.+.++|+|||++++-+.
T Consensus 81 -~---~~~~~~d~~~~-~~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (199)
T 2xvm_A 81 -N---LHTRVVDLNNL-TF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA 137 (199)
T ss_dssp -T---EEEEECCGGGC-CC-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred -C---cEEEEcchhhC-CC-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence 1 77778876653 33 678999998754322 2456789999999999998766443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.9e-10 Score=101.57 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=84.3
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+..+++.. +..+|||||||+|..+..+++. . +.+|+++|+++.+.+.+++ +
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~gvd~s~~~~~~a~~-------------------~ 106 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK---Y--DVNVVGLTLSKNQANHVQQ-------------------L 106 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHH---H--CCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHH---c--CCEEEEEECCHHHHHHHHH-------------------H
Confidence 3555555543 3569999999999999999964 2 4599999999998887765 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...+..++ +.+..++..+ ++ ++||+|+..... .. ......++.+.++|+|||++++.+...
T Consensus 107 ~~~~~~~~~---~~~~~~d~~~-~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 107 VANSENLRS---KRVLLAGWEQ-FD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp HHTCCCCSC---EEEEESCGGG-CC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred HHhcCCCCC---eEEEECChhh-CC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 333333334 7788887654 23 789999976432 12 345678999999999999999988765
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=98.76 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=81.7
Q ss_pred HHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc
Q 041517 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN 226 (327)
Q Consensus 147 L~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g 226 (327)
+..++...++++|||||||+|..+..+++. +.+++++|+++.+.+.+++. ....+
T Consensus 21 l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-------------------~~~~~ 75 (202)
T 2kw5_A 21 LVSVANQIPQGKILCLAEGEGRNACFLASL------GYEVTAVDQSSVGLAKAKQL-------------------AQEKG 75 (202)
T ss_dssp HHHHHHHSCSSEEEECCCSCTHHHHHHHTT------TCEEEEECSSHHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHHhCCCCCEEEECCCCCHhHHHHHhC------CCeEEEEECCHHHHHHHHHH-------------------HHhcC
Confidence 344444455569999999999999998873 56999999999888877652 22222
Q ss_pred cCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 227 AIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 227 ~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
. .+.+..++..+. +..++.||+|+....|.. ......++.+.+.|+|||++++.++..
T Consensus 76 ~-----~~~~~~~d~~~~-~~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 76 V-----KITTVQSNLADF-DIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp C-----CEEEECCBTTTB-SCCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred C-----ceEEEEcChhhc-CCCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 2 277777776552 322478999998655532 235667899999999999999987654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-10 Score=104.69 Aligned_cols=117 Identities=20% Similarity=0.108 Sum_probs=84.7
Q ss_pred HHHHHHhh--cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDK--VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~--~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
++..|.+. .++.+|||||||+|..+..+++. +.+..+|+++|+++.+.+.+++.. .
T Consensus 25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~~~~a~~~~-------------------~ 82 (299)
T 3g5t_A 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQE---LKPFEQIIGSDLSATMIKTAEVIK-------------------E 82 (299)
T ss_dssp HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHH---SSCCSEEEEEESCHHHHHHHHHHH-------------------H
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHh---CCCCCEEEEEeCCHHHHHHHHHHH-------------------H
Confidence 44444443 25789999999999999999984 345899999999999988876632 2
Q ss_pred hh-ccCCcccceEeeecchhhhhhhcC------CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 224 YQ-NAIDSVLPVPFSSGSALTKLCEWG------VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 224 ~~-g~~~~v~~V~~~~gda~~~L~~l~------~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.. +...+ +.+..++..+. +... ++||+|+......+-.....++.+.++|+|||++++-++
T Consensus 83 ~~~~~~~~---v~~~~~d~~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i~~~ 150 (299)
T 3g5t_A 83 GSPDTYKN---VSFKISSSDDF-KFLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAIWGY 150 (299)
T ss_dssp HCC-CCTT---EEEEECCTTCC-GGGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hccCCCCc---eEEEEcCHHhC-CccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEEEec
Confidence 11 11223 88888887663 3333 689999987542222677899999999999999988433
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-11 Score=104.07 Aligned_cols=117 Identities=3% Similarity=-0.166 Sum_probs=74.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+|||+|..+.+||+. +.+|++||+++.|.+.|++........... .+.... ...+ +
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~-------~~~~~~-~~~~---v 84 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITSQ-------GDFKVY-AAPG---I 84 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEEE-------TTEEEE-ECSS---S
T ss_pred CCCEEEEeCCCCcHhHHHHHHC------CCeEEEEeCCHHHHHHHHHHccCCcccccc-------cccccc-cCCc---c
Confidence 5689999999999999999984 579999999999998886632100000000 000000 0112 7
Q ss_pred EeeecchhhhhhhcC-CcEeEEEEcCCC-CCC--cHHHHHHHHHccCCCCeE--EEEEcCC
Q 041517 235 PFSSGSALTKLCEWG-VVGDLIEIDAGH-DFN--SAWADINRAWRILRPGGV--IFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~-~~fDLIfIDa~h-~~~--~v~~dl~~~~~lL~pGGv--Ii~dD~~ 289 (327)
++..+|..+. +..+ ++||+|+.-+.. ..+ .....++++.++|+|||+ ++..++.
T Consensus 85 ~~~~~d~~~l-~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~ 144 (203)
T 1pjz_A 85 EIWCGDFFAL-TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 144 (203)
T ss_dssp EEEEECCSSS-THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred EEEECccccC-CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC
Confidence 7888876653 2222 589999965432 122 233578999999999997 5555553
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-10 Score=99.35 Aligned_cols=108 Identities=15% Similarity=-0.038 Sum_probs=64.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++.+|||+|||+|..++.+++. .++.+++++|+++.+.+.++++. ...+. .
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~~~~~~~~a~~~~-------------------~~~~~-----~ 80 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALA----CPGVSVTAVDLSMDALAVARRNA-------------------ERFGA-----V 80 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHH----CTTEEEEEEECC-----------------------------------------
T ss_pred CCCCEEEEecCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHH-------------------HHhCC-----c
Confidence 45679999999999999999985 35789999999999998887632 21121 1
Q ss_pred eEeeecchhhhhhh---cCCcEeEEEEcCCCCC-C-------c-------------------HHHHHHHHHccCCCCeEE
Q 041517 234 VPFSSGSALTKLCE---WGVVGDLIEIDAGHDF-N-------S-------------------AWADINRAWRILRPGGVI 283 (327)
Q Consensus 234 V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~-~-------~-------------------v~~dl~~~~~lL~pGGvI 283 (327)
+++..+|..+.++. ..++||+|+.|...-. . . ....++.+.++|+|||++
T Consensus 81 ~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 160 (215)
T 4dzr_A 81 VDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAG 160 (215)
T ss_dssp --CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEE
T ss_pred eEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeE
Confidence 66777777775443 2378999999632100 0 0 145667788999999994
Q ss_pred EEEcCC
Q 041517 284 FGHDYF 289 (327)
Q Consensus 284 i~dD~~ 289 (327)
++-.+.
T Consensus 161 ~~~~~~ 166 (215)
T 4dzr_A 161 VFLEVG 166 (215)
T ss_dssp EEEECT
T ss_pred EEEEEC
Confidence 443443
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.3e-10 Score=99.06 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=93.6
Q ss_pred HHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..+.... +..+|||||||+|..++.+++. + ..+++++|.++.+.+.+++ ++.
T Consensus 49 ~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~-------------------~~~ 104 (205)
T 3grz_A 49 LAMLGIERAMVKPLTVADVGTGSGILAIAAHKL----G-AKSVLATDISDESMTAAEE-------------------NAA 104 (205)
T ss_dssp HHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT----T-CSEEEEEESCHHHHHHHHH-------------------HHH
T ss_pred HHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHH-------------------HHH
Confidence 3445544433 4679999999999999998873 2 5699999999998887766 333
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
..+..+ +.+..++..+. .+++||+|+.+... +.....++.+.++|+|||++++.++... -.+.+..
T Consensus 105 ~~~~~~----v~~~~~d~~~~---~~~~fD~i~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~-----~~~~~~~ 170 (205)
T 3grz_A 105 LNGIYD----IALQKTSLLAD---VDGKFDLIVANILA--EILLDLIPQLDSHLNEDGQVIFSGIDYL-----QLPKIEQ 170 (205)
T ss_dssp HTTCCC----CEEEESSTTTT---CCSCEEEEEEESCH--HHHHHHGGGSGGGEEEEEEEEEEEEEGG-----GHHHHHH
T ss_pred HcCCCc----eEEEecccccc---CCCCceEEEECCcH--HHHHHHHHHHHHhcCCCCEEEEEecCcc-----cHHHHHH
Confidence 333321 67777776553 34789999998643 3345668888999999999999776652 2455666
Q ss_pred HHHHcCCeEE
Q 041517 304 FAKINGLKVQ 313 (327)
Q Consensus 304 f~~~~gl~v~ 313 (327)
.++..|+++.
T Consensus 171 ~~~~~Gf~~~ 180 (205)
T 3grz_A 171 ALAENSFQID 180 (205)
T ss_dssp HHHHTTEEEE
T ss_pred HHHHcCCceE
Confidence 7777887754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-10 Score=103.36 Aligned_cols=125 Identities=17% Similarity=0.229 Sum_probs=89.6
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+...+..+|||+|||+|..++.+++. +++.++++++|.++.+.+.+++ |+...+..++
T Consensus 108 ~~~~~~~~VLDiG~G~G~~~~~la~~---~~~~~~v~~vD~s~~~~~~a~~-------------------~~~~~~~~~~ 165 (277)
T 1o54_A 108 LDVKEGDRIIDTGVGSGAMCAVLARA---VGSSGKVFAYEKREEFAKLAES-------------------NLTKWGLIER 165 (277)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH---TTTTCEEEEECCCHHHHHHHHH-------------------HHHHTTCGGG
T ss_pred hCCCCCCEEEEECCcCCHHHHHHHHH---hCCCcEEEEEECCHHHHHHHHH-------------------HHHHcCCCCC
Confidence 34445679999999999999999985 5668999999999998887766 3333333233
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
+.+..++..+.++ ++.||+|++|.. ..+..++.+.+.|+|||++++-+... ..+.+..+.+ +..|+
T Consensus 166 ---v~~~~~d~~~~~~--~~~~D~V~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~----~~~~~~~~~l-~~~gf 231 (277)
T 1o54_A 166 ---VTIKVRDISEGFD--EKDVDALFLDVP----DPWNYIDKCWEALKGGGRFATVCPTT----NQVQETLKKL-QELPF 231 (277)
T ss_dssp ---EEEECCCGGGCCS--CCSEEEEEECCS----CGGGTHHHHHHHEEEEEEEEEEESSH----HHHHHHHHHH-HHSSE
T ss_pred ---EEEEECCHHHccc--CCccCEEEECCc----CHHHHHHHHHHHcCCCCEEEEEeCCH----HHHHHHHHHH-HHCCC
Confidence 7888888776532 368999999753 23478899999999999999866532 2344444443 44666
Q ss_pred e
Q 041517 311 K 311 (327)
Q Consensus 311 ~ 311 (327)
.
T Consensus 232 ~ 232 (277)
T 1o54_A 232 I 232 (277)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=99.66 Aligned_cols=137 Identities=18% Similarity=0.109 Sum_probs=96.8
Q ss_pred HHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.+..|.+.. +..+|||+|||+|..++.+++. + .+|+++|+++.+.+.+++ |+..
T Consensus 110 ~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~----g--~~v~gvDi~~~~v~~a~~-------------------n~~~ 164 (254)
T 2nxc_A 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKL----G--GKALGVDIDPMVLPQAEA-------------------NAKR 164 (254)
T ss_dssp HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT----T--CEEEEEESCGGGHHHHHH-------------------HHHH
T ss_pred HHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh----C--CeEEEEECCHHHHHHHHH-------------------HHHH
Confidence 444444333 4679999999999999998873 3 399999999999988776 3333
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
.+.. +.+..++..+.++ ..+||+|+.+... +.....++.+.++|+|||++++.++... -.+.+...
T Consensus 165 ~~~~-----v~~~~~d~~~~~~--~~~fD~Vv~n~~~--~~~~~~l~~~~~~LkpgG~lils~~~~~-----~~~~v~~~ 230 (254)
T 2nxc_A 165 NGVR-----PRFLEGSLEAALP--FGPFDLLVANLYA--ELHAALAPRYREALVPGGRALLTGILKD-----RAPLVREA 230 (254)
T ss_dssp TTCC-----CEEEESCHHHHGG--GCCEEEEEEECCH--HHHHHHHHHHHHHEEEEEEEEEEEEEGG-----GHHHHHHH
T ss_pred cCCc-----EEEEECChhhcCc--CCCCCEEEECCcH--HHHHHHHHHHHHHcCCCCEEEEEeeccC-----CHHHHHHH
Confidence 2321 6677787776543 3689999987543 3345778999999999999999877652 24556666
Q ss_pred HHHcCCeEE--EccceEEE
Q 041517 305 AKINGLKVQ--IDGQHWVI 321 (327)
Q Consensus 305 ~~~~gl~v~--~~gq~w~i 321 (327)
++..|+++. .....|+.
T Consensus 231 l~~~Gf~~~~~~~~~~W~~ 249 (254)
T 2nxc_A 231 MAGAGFRPLEEAAEGEWVL 249 (254)
T ss_dssp HHHTTCEEEEEEEETTEEE
T ss_pred HHHCCCEEEEEeccCCeEE
Confidence 677888764 23445653
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=9e-10 Score=106.73 Aligned_cols=146 Identities=17% Similarity=0.054 Sum_probs=102.2
Q ss_pred CC-chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHH
Q 041517 139 GW-GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQ 217 (327)
Q Consensus 139 gw-~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~ 217 (327)
+| ..+......+... +..+|||+|||+|..++.+|+. ..+|+++|+++.+.+.+++
T Consensus 193 g~f~~~~~~~~~~~~~-~~~~VLDlg~G~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~---------------- 249 (382)
T 1wxx_A 193 GAYLDQRENRLYMERF-RGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEE---------------- 249 (382)
T ss_dssp CCCGGGHHHHHHGGGC-CEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHH----------------
T ss_pred ccccchHHHHHHHHhc-CCCeEEEeeeccCHHHHHHHHh------CCEEEEEECCHHHHHHHHH----------------
Confidence 44 3333333344444 6679999999999999999984 5789999999999888876
Q ss_pred HHHHHhhhccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCC----------CcHHHHHHHHHccCCCCeEEE
Q 041517 218 FLQNVIYQNAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDF----------NSAWADINRAWRILRPGGVIF 284 (327)
Q Consensus 218 Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~----------~~v~~dl~~~~~lL~pGGvIi 284 (327)
|+...+..+ +.+..+|+.+.++.+ +.+||+|++|...-. ......+..+.++|+|||+++
T Consensus 250 ---n~~~n~~~~----~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 322 (382)
T 1wxx_A 250 ---NARLNGLGN----VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILA 322 (382)
T ss_dssp ---HHHHTTCTT----EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred ---HHHHcCCCC----ceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 444334322 788899998876654 578999999963211 122346788999999999999
Q ss_pred EEcCCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 285 GHDYFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 285 ~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
+..+........-.+.+.+.+...|.++..
T Consensus 323 ~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~ 352 (382)
T 1wxx_A 323 TASCSHHMTEPLFYAMVAEAAQDAHRLLRV 352 (382)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 987765333233456666666777755543
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=108.14 Aligned_cols=118 Identities=11% Similarity=0.120 Sum_probs=86.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-Ccccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI-DSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~-~~v~~ 233 (327)
+..+|||||||+|..++.+|.. .+ ..++++||+++.+.++|+++.+ .|.+++...|+. ++
T Consensus 173 ~gd~VLDLGCGtG~l~l~lA~~---~g-~~kVvGIDiS~~~lelAr~n~e------------~frkr~~~~Gl~~~r--- 233 (438)
T 3uwp_A 173 DDDLFVDLGSGVGQVVLQVAAA---TN-CKHHYGVEKADIPAKYAETMDR------------EFRKWMKWYGKKHAE--- 233 (438)
T ss_dssp TTCEEEEESCTTSHHHHHHHHH---CC-CSEEEEEECCHHHHHHHHHHHH------------HHHHHHHHHTBCCCE---
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---CC-CCEEEEEeCCHHHHHHHHHHHH------------HHHHHHHHhCCCCCC---
Confidence 4579999999999999999974 22 4579999999999988876431 233334444442 34
Q ss_pred eEeeecchhhhhhhcC--CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC
Q 041517 234 VPFSSGSALTKLCEWG--VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAA 292 (327)
Q Consensus 234 V~~~~gda~~~L~~l~--~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~ 292 (327)
|.+..||..+. +..+ ..||+||+..-.-.+.....|.+.++.|+|||.||+.+.....
T Consensus 234 Vefi~GD~~~l-p~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 234 YTLERGDFLSE-EWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp EEEEECCTTSH-HHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred eEEEECcccCC-ccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 89999998763 2211 3699999865432355677889999999999999999887643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=101.07 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=82.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..+....++.+|||||||+|..+..+++. ..+|+++|+++.+.+.+++... .
T Consensus 32 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~~-------------------~ 86 (250)
T 2p7i_A 32 FMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLK-------------------D 86 (250)
T ss_dssp HHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSC-------------------S
T ss_pred HHHHHHHhhcCCCcEEEECCCCCHHHHHHHHh------CCcEEEEeCCHHHHHHHHHhhh-------------------C
Confidence 35555555567789999999999999999873 3489999999988877765321 0
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHH-ccCCCCeEEEEEcCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAW-RILRPGGVIFGHDYF 289 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~-~lL~pGGvIi~dD~~ 289 (327)
.+.+..++..+.. .+++||+|+.-... ..+.....++++. ++|+|||++++.+..
T Consensus 87 --------~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 87 --------GITYIHSRFEDAQ--LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp --------CEEEEESCGGGCC--CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred --------CeEEEEccHHHcC--cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 1788888876642 35789999986542 2345568899999 999999999987754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.7e-10 Score=107.05 Aligned_cols=139 Identities=14% Similarity=0.078 Sum_probs=96.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..++|||+|||+|..++.+++. .++.+|++||.++.+.+.++++ +...+..+. ..+
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~----~p~~~V~gvD~s~~al~~Ar~n-------------------~~~ngl~~~-~~v 277 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSRLN-------------------VETNMPEAL-DRC 277 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHH----CTTCEEEEEESCHHHHHHHHHH-------------------HHHHCGGGG-GGE
T ss_pred CCCeEEEEeCcchHHHHHHHHH----CCCCEEEEEECcHHHHHHHHHH-------------------HHHcCCCcC-ceE
Confidence 3479999999999999999985 4578999999999998888763 333333221 227
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC------CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD------FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~------~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
++..++..+.++ +++||+|+.+.... .......++.+.++|+|||++++-.-. ..+....+++...
T Consensus 278 ~~~~~D~~~~~~--~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~----~~~~~~~l~~~fg-- 349 (375)
T 4dcm_A 278 EFMINNALSGVE--PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR----HLDYFHKLKKIFG-- 349 (375)
T ss_dssp EEEECSTTTTCC--TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET----TSCHHHHHHHHHS--
T ss_pred EEEechhhccCC--CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC----CcCHHHHHHHhcC--
Confidence 778888776432 46899999984421 222345689999999999988874322 2344455555444
Q ss_pred CCeEEEccceEEEeccc
Q 041517 309 GLKVQIDGQHWVIHSAV 325 (327)
Q Consensus 309 gl~v~~~gq~w~i~~~~ 325 (327)
..++......+.|.+++
T Consensus 350 ~~~~~a~~~~F~V~~~~ 366 (375)
T 4dcm_A 350 NCTTIATNNKFVVLKAV 366 (375)
T ss_dssp CCEEEEECSSEEEEEEE
T ss_pred CEEEEeeCCCEEEEEEc
Confidence 56666667777776654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=105.28 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=85.7
Q ss_pred cCCchHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHH
Q 041517 138 KGWGSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQ 217 (327)
Q Consensus 138 ~gw~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~ 217 (327)
.++ ..+.+|..++...+..+|||+|||+|..++.+++. .++.+|++||+++.+.+.++++.
T Consensus 20 ~g~-~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~----~~~~~v~gvDi~~~~~~~a~~n~-------------- 80 (260)
T 2ozv_A 20 QGH-MDAMLLASLVADDRACRIADLGAGAGAAGMAVAAR----LEKAEVTLYERSQEMAEFARRSL-------------- 80 (260)
T ss_dssp ----CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHH----CTTEEEEEEESSHHHHHHHHHHT--------------
T ss_pred CCc-cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHH--------------
Confidence 344 45667777666556779999999999999999984 34689999999999998887743
Q ss_pred HHHHHhh---hccCCcccceEeeecchhhhhhh-----c-CCcEeEEEEcCCCC-------------------CCcHHHH
Q 041517 218 FLQNVIY---QNAIDSVLPVPFSSGSALTKLCE-----W-GVVGDLIEIDAGHD-------------------FNSAWAD 269 (327)
Q Consensus 218 Fl~nv~~---~g~~~~v~~V~~~~gda~~~L~~-----l-~~~fDLIfIDa~h~-------------------~~~v~~d 269 (327)
.. .++.++ +.+..+|..+.++. + +.+||+|+.+-..- .......
T Consensus 81 -----~~~~~~~l~~~---v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~ 152 (260)
T 2ozv_A 81 -----ELPDNAAFSAR---IEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDW 152 (260)
T ss_dssp -----TSGGGTTTGGG---EEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHH
T ss_pred -----HhhhhCCCcce---EEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHH
Confidence 22 333334 78888887765331 1 47899999982110 0123456
Q ss_pred HHHHHccCCCCeEEEE
Q 041517 270 INRAWRILRPGGVIFG 285 (327)
Q Consensus 270 l~~~~~lL~pGGvIi~ 285 (327)
++.+.++|+|||++++
T Consensus 153 l~~~~~~LkpgG~l~~ 168 (260)
T 2ozv_A 153 IRTASAIMVSGGQLSL 168 (260)
T ss_dssp HHHHHHHEEEEEEEEE
T ss_pred HHHHHHHcCCCCEEEE
Confidence 8889999999998877
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-10 Score=101.25 Aligned_cols=142 Identities=11% Similarity=-0.002 Sum_probs=95.6
Q ss_pred HHHHHHHHhhc----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 144 GAVFGNLIDKV----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 144 g~lL~~L~~~~----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
..++..++... ++.+|||||||+|..+..+++. . ..+++++|+++.+.+.+++...
T Consensus 64 ~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~--------------- 123 (241)
T 2ex4_A 64 RKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLP----L-FREVDMVDITEDFLVQAKTYLG--------------- 123 (241)
T ss_dssp HHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTT----T-CSEEEEEESCHHHHHHHHHHTG---------------
T ss_pred HHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHh----c-CCEEEEEeCCHHHHHHHHHHhh---------------
Confidence 45666666544 4789999999999999998873 2 5699999999999888776331
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-Cc--HHHHHHHHHccCCCCeEEEEEcCCCCC----
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NS--AWADINRAWRILRPGGVIFGHDYFTAA---- 292 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~--v~~dl~~~~~lL~pGGvIi~dD~~~~~---- 292 (327)
..+ .. .+.+..++..+. +..+++||+|+++....+ .. ....++.+.++|+|||++++.+.....
T Consensus 124 ----~~~-~~---~~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~ 194 (241)
T 2ex4_A 124 ----EEG-KR---VRNYFCCGLQDF-TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 194 (241)
T ss_dssp ----GGG-GG---EEEEEECCGGGC-CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE
T ss_pred ----hcC-Cc---eEEEEEcChhhc-CCCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCccee
Confidence 111 01 167777776542 333468999998865322 22 346789999999999999987653310
Q ss_pred -----CchhHHHHHHHHHHHcCCeEEE
Q 041517 293 -----DNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 293 -----~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
.+.--.+.+..+++..|+++..
T Consensus 195 ~~~~~~~~~~~~~~~~~l~~aGf~~~~ 221 (241)
T 2ex4_A 195 DDVDSSVCRDLDVVRRIICSAGLSLLA 221 (241)
T ss_dssp ETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cccCCcccCCHHHHHHHHHHcCCeEEE
Confidence 0001245667777888887653
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-10 Score=98.49 Aligned_cols=105 Identities=17% Similarity=0.079 Sum_probs=77.0
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|..+..+++. .++..+++++|.++.+.+.+++. +...+.. .
T Consensus 74 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~-------------------~~~~~~~-~- 129 (215)
T 2yxe_A 74 DLKPGMKVLEIGTGCGYHAAVTAEI---VGEDGLVVSIERIPELAEKAERT-------------------LRKLGYD-N- 129 (215)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---HCTTSEEEEEESCHHHHHHHHHH-------------------HHHHTCT-T-
T ss_pred CCCCCCEEEEECCCccHHHHHHHHH---hCCCCEEEEEeCCHHHHHHHHHH-------------------HHHcCCC-C-
Confidence 3345679999999999999999986 34568999999999988877653 2222221 1
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.+..++..+.++. ..+||+|+++.....-. +.+.+.|+|||++++.-.
T Consensus 130 --v~~~~~d~~~~~~~-~~~fD~v~~~~~~~~~~-----~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 130 --VIVIVGDGTLGYEP-LAPYDRIYTTAAGPKIP-----EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp --EEEEESCGGGCCGG-GCCEEEEEESSBBSSCC-----HHHHHTEEEEEEEEEEES
T ss_pred --eEEEECCcccCCCC-CCCeeEEEECCchHHHH-----HHHHHHcCCCcEEEEEEC
Confidence 77777877554332 46899999987654333 588999999999988643
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.4e-10 Score=105.64 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=83.6
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...++.+|||||||+|..+..+++. ++.+.+|+++|+++.+.+.+++. +...+.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~---- 72 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPL---LPEGSKYTGIDSGETLLAEAREL-------------------FRLLPY---- 72 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTT---SCTTCEEEEEESCHHHHHHHHHH-------------------HHSSSS----
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHHH-------------------HHhcCC----
Confidence 3346789999999999999999884 45468999999999988877653 221111
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+.+..+|..+ ++. +++||+|+.... +........++.+.+.|+|||++++.+..
T Consensus 73 -~v~~~~~d~~~-~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 73 -DSEFLEGDATE-IEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp -EEEEEESCTTT-CCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -ceEEEEcchhh-cCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 28888888776 332 568999998765 33355668899999999999999988876
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.06 E-value=7.6e-10 Score=99.66 Aligned_cols=124 Identities=16% Similarity=0.142 Sum_probs=88.8
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDS 230 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~ 230 (327)
...+..+|||+|||+|..++.+++. +++.++++++|.++.+.+.+++ ++... + .++
T Consensus 93 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~~D~~~~~~~~a~~-------------------~~~~~~g-~~~ 149 (258)
T 2pwy_A 93 DLAPGMRVLEAGTGSGGLTLFLARA---VGEKGLVESYEARPHHLAQAER-------------------NVRAFWQ-VEN 149 (258)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---HCTTSEEEEEESCHHHHHHHHH-------------------HHHHHCC-CCC
T ss_pred CCCCCCEEEEECCCcCHHHHHHHHH---hCCCCEEEEEeCCHHHHHHHHH-------------------HHHHhcC-CCC
Confidence 3345679999999999999999985 4668899999999998887766 33222 3 223
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
+.+..++..+. +..++.||+|++|... ....++.+.+.|+|||++++..... ..+.+.++.+ ++.|+
T Consensus 150 ---v~~~~~d~~~~-~~~~~~~D~v~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~~----~~~~~~~~~l-~~~gf 216 (258)
T 2pwy_A 150 ---VRFHLGKLEEA-ELEEAAYDGVALDLME----PWKVLEKAALALKPDRFLVAYLPNI----TQVLELVRAA-EAHPF 216 (258)
T ss_dssp ---EEEEESCGGGC-CCCTTCEEEEEEESSC----GGGGHHHHHHHEEEEEEEEEEESCH----HHHHHHHHHH-TTTTE
T ss_pred ---EEEEECchhhc-CCCCCCcCEEEECCcC----HHHHHHHHHHhCCCCCEEEEEeCCH----HHHHHHHHHH-HHCCC
Confidence 78888887664 1113689999997543 3467899999999999998866432 3455555554 34665
Q ss_pred e
Q 041517 311 K 311 (327)
Q Consensus 311 ~ 311 (327)
.
T Consensus 217 ~ 217 (258)
T 2pwy_A 217 R 217 (258)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-10 Score=98.10 Aligned_cols=111 Identities=16% Similarity=0.062 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..+....+..+|||||||+|..+..+++. +.+++++|+++.+.+.+++.
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~---------------------- 87 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL------ADRVTALDGSAEMIAEAGRH---------------------- 87 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHGGG----------------------
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHhc----------------------
Confidence 45555544445679999999999999999985 67999999999888766541
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-Cc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+. .+ +.+..++..+. ..+++||+|+......+ +. ....++.+.+.|+|||++++.+...
T Consensus 88 -~~-~~---~~~~~~d~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 88 -GL-DN---VEFRQQDLFDW--TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp -CC-TT---EEEEECCTTSC--CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -CC-CC---eEEEecccccC--CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 11 11 77788887664 23579999998764322 22 2677999999999999999987754
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-10 Score=100.31 Aligned_cols=103 Identities=18% Similarity=0.094 Sum_probs=75.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+++. +++.++|+++|.++.+.+.++++ .... .+ +
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~---~~~~~~v~~vD~s~~~~~~~~~~-------------------~~~~---~~---v 124 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDI---VGWEGKIFGIEFSPRVLRELVPI-------------------VEER---RN---I 124 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHH---HCTTSEEEEEESCHHHHHHHHHH-------------------HSSC---TT---E
T ss_pred CCCEEEEEeccCCHHHHHHHHH---hCCCeEEEEEECCHHHHHHHHHH-------------------Hhcc---CC---C
Confidence 3579999999999999999985 45578999999998877655442 2111 12 7
Q ss_pred Eeeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..++..+. +..+...||+|+.|..... .....++.+.+.|+|||++++.
T Consensus 125 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 125 VPILGDATKPEEYRALVPKVDVIFEDVAQPT-QAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp EEEECCTTCGGGGTTTCCCEEEEEECCCSTT-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEccCCCcchhhcccCCceEEEECCCCHh-HHHHHHHHHHHhcCCCCEEEEE
Confidence 7778877652 2233568999999976422 2223389999999999988886
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.4e-10 Score=101.47 Aligned_cols=107 Identities=19% Similarity=0.091 Sum_probs=81.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|+++.+.+.+++. +...+.. + +
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~-------------------~~~~~~~-~---~ 89 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKN----NPDAEITSIDISPESLEKAREN-------------------TEKNGIK-N---V 89 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHHH-------------------HHHTTCC-S---E
T ss_pred CCCeEEEecCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH-------------------HHHcCCC-C---c
Confidence 4679999999999999999984 4578999999999988877652 2222221 2 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..++..+ ++..+++||+|+..... ..+.....++.+.++|+|||++++.+..
T Consensus 90 ~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 90 KFLQANIFS-LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp EEEECCGGG-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEccccc-CCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 888888765 33335799999987542 2345568899999999999999987643
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-10 Score=101.26 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=89.4
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-c-cCC
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-N-AID 229 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g-~~~ 229 (327)
...+..+|||+|||+|..+..+++. +++.++++++|.++.+.+.++++ +... + +.+
T Consensus 96 ~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~v~~vD~~~~~~~~a~~~-------------------~~~~~g~~~~ 153 (280)
T 1i9g_A 96 DIFPGARVLEAGAGSGALTLSLLRA---VGPAGQVISYEQRADHAEHARRN-------------------VSGCYGQPPD 153 (280)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---HCTTSEEEEECSCHHHHHHHHHH-------------------HHHHHTSCCT
T ss_pred CCCCCCEEEEEcccccHHHHHHHHH---hCCCCEEEEEeCCHHHHHHHHHH-------------------HHHhcCCCCC
Confidence 3345679999999999999999985 46688999999999988877663 3222 2 122
Q ss_pred cccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 230 SVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 230 ~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
+ +.+..+|..+. +..++.||+|++|... .+..++.+.+.|+|||++++..... ..+.+.++.+.+..+
T Consensus 154 ~---v~~~~~d~~~~-~~~~~~~D~v~~~~~~----~~~~l~~~~~~L~pgG~l~~~~~~~----~~~~~~~~~l~~~~~ 221 (280)
T 1i9g_A 154 N---WRLVVSDLADS-ELPDGSVDRAVLDMLA----PWEVLDAVSRLLVAGGVLMVYVATV----TQLSRIVEALRAKQC 221 (280)
T ss_dssp T---EEEECSCGGGC-CCCTTCEEEEEEESSC----GGGGHHHHHHHEEEEEEEEEEESSH----HHHHHHHHHHHHHSS
T ss_pred c---EEEEECchHhc-CCCCCceeEEEECCcC----HHHHHHHHHHhCCCCCEEEEEeCCH----HHHHHHHHHHHhcCC
Confidence 3 78888887664 2124689999997653 3478899999999999998865432 345566665554344
Q ss_pred C
Q 041517 310 L 310 (327)
Q Consensus 310 l 310 (327)
+
T Consensus 222 f 222 (280)
T 1i9g_A 222 W 222 (280)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.3e-10 Score=98.71 Aligned_cols=113 Identities=17% Similarity=0.120 Sum_probs=79.8
Q ss_pred HHHHHHHh-hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLID-KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~-~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..+.. ..+..+|||||||+|..+..+++. .++.++|+++|+++.+.+.++++. .
T Consensus 66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~---~~~~~~v~~vD~s~~~~~~a~~~~-------------------~ 123 (226)
T 1i1n_A 66 YALELLFDQLHEGAKALDVGSGSGILTACFARM---VGCTGKVIGIDHIKELVDDSVNNV-------------------R 123 (226)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHH---HCTTCEEEEEESCHHHHHHHHHHH-------------------H
T ss_pred HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHHHH-------------------H
Confidence 34454432 224579999999999999999985 355689999999999888776532 2
Q ss_pred hhcc----CCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 224 YQNA----IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 224 ~~g~----~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
..+. .++ +.+..++..+... ...+||+|++++.... .++.+.+.|+|||++++.-.
T Consensus 124 ~~~~~~~~~~~---v~~~~~d~~~~~~-~~~~fD~i~~~~~~~~-----~~~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 124 KDDPTLLSSGR---VQLVVGDGRMGYA-EEAPYDAIHVGAAAPV-----VPQALIDQLKPGGRLILPVG 183 (226)
T ss_dssp HHCTHHHHTSS---EEEEESCGGGCCG-GGCCEEEEEECSBBSS-----CCHHHHHTEEEEEEEEEEES
T ss_pred hhcccccCCCc---EEEEECCcccCcc-cCCCcCEEEECCchHH-----HHHHHHHhcCCCcEEEEEEe
Confidence 1111 112 7788887765322 2468999999976432 23788999999999998644
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-10 Score=99.60 Aligned_cols=102 Identities=15% Similarity=-0.006 Sum_probs=70.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .+ .++|+++|+++.+.+...+ +... . .. +
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~---~~-~~~V~gvD~s~~~l~~~~~-------------------~a~~--~-~~---v 107 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADI---VD-EGIIYAVEYSAKPFEKLLE-------------------LVRE--R-NN---I 107 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHH---TT-TSEEEEECCCHHHHHHHHH-------------------HHHH--C-SS---E
T ss_pred CCCEEEEECCcCCHHHHHHHHH---cC-CCEEEEEECCHHHHHHHHH-------------------HHhc--C-CC---e
Confidence 3569999999999999999985 44 6899999999876543222 1110 0 11 5
Q ss_pred Eeeecchhhhh--hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKL--CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L--~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..+|+.+.. ..+.++||+|+.|..+. ......++++.+.|+|||.+++.
T Consensus 108 ~~~~~d~~~~~~~~~~~~~fD~V~~~~~~~-~~~~~~l~~~~r~LkpgG~l~i~ 160 (210)
T 1nt2_A 108 IPLLFDASKPWKYSGIVEKVDLIYQDIAQK-NQIEILKANAEFFLKEKGEVVIM 160 (210)
T ss_dssp EEECSCTTCGGGTTTTCCCEEEEEECCCST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcCCCCchhhcccccceeEEEEeccCh-hHHHHHHHHHHHHhCCCCEEEEE
Confidence 56666655421 11247899999996543 22223489999999999999886
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=109.09 Aligned_cols=136 Identities=13% Similarity=0.068 Sum_probs=95.3
Q ss_pred HHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
++..++... ...+|||+|||.|..|+.+|+. ++..++|+++|+++.+.+.+++ |+.
T Consensus 106 l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~---~~~~g~V~avDis~~~l~~~~~-------------------n~~ 163 (479)
T 2frx_A 106 LPVAALFADGNAPQRVMDVAAAPGSKTTQISAR---MNNEGAILANEFSASRVKVLHA-------------------NIS 163 (479)
T ss_dssp HHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHH---TTTCSEEEEECSSHHHHHHHHH-------------------HHH
T ss_pred HHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHHH-------------------HHH
Confidence 444444444 5679999999999999999996 4557899999999988877765 454
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC-------c----------------HHHHHHHHHccCCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN-------S----------------AWADINRAWRILRPG 280 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~-------~----------------v~~dl~~~~~lL~pG 280 (327)
..|.. . |.+..+|+.+......+.||.|++|+..... . ....++.+.++|+||
T Consensus 164 r~g~~-n---v~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 239 (479)
T 2frx_A 164 RCGIS-N---VALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 (479)
T ss_dssp HHTCC-S---EEEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred HcCCC-c---EEEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44542 2 7788888776433346789999999643211 0 134688899999999
Q ss_pred eEEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 281 GVIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 281 GvIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
|+|++..+...+. .-.+.|+.|.+.++
T Consensus 240 G~LvysTcs~~~~--Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 240 GTLVYSTCTLNQE--ENEAVCLWLKETYP 266 (479)
T ss_dssp EEEEEEESCCSST--TTHHHHHHHHHHST
T ss_pred CEEEEecccCCcc--cCHHHHHHHHHHCC
Confidence 9999998876432 11234555555554
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=97.06 Aligned_cols=136 Identities=15% Similarity=0.040 Sum_probs=95.2
Q ss_pred HHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
++..+.+.. +..+|||||||+|..+..+++. +.+++++|+++.+.+.+++...
T Consensus 43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~-------------------- 96 (242)
T 3l8d_A 43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT------GYKAVGVDISEVMIQKGKERGE-------------------- 96 (242)
T ss_dssp HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHTTTC--------------------
T ss_pred HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhcc--------------------
Confidence 444444444 4679999999999999999984 6799999999988877665210
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCch--------
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFTAADNR-------- 295 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~-------- 295 (327)
..+ +.+..++..+ ++..+++||+|+.... |..+.....++.+.+.|+|||++++.+........
T Consensus 97 ---~~~---~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~ 169 (242)
T 3l8d_A 97 ---GPD---LSFIKGDLSS-LPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLY 169 (242)
T ss_dssp ---BTT---EEEEECBTTB-CSSCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGG
T ss_pred ---cCC---ceEEEcchhc-CCCCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhc
Confidence 111 7777777665 2333579999997643 33456678899999999999999988754311000
Q ss_pred --------hHHHHHHHHHHHcCCeEEE
Q 041517 296 --------GVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 296 --------GV~~Av~~f~~~~gl~v~~ 314 (327)
--...+..++...|+++..
T Consensus 170 ~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 170 GKDVVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp TCCCSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred cccccccCCCHHHHHHHHHHcCCEEEE
Confidence 0124567777888988654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.5e-10 Score=101.61 Aligned_cols=108 Identities=15% Similarity=0.061 Sum_probs=80.0
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+ ...++.+|||||||+|..+..+++ ++.+|+++|+++.+.+.+++..
T Consensus 49 l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~~---------------------- 99 (279)
T 3ccf_A 49 LLQLL-NPQPGEFILDLGCGTGQLTEKIAQ------SGAEVLGTDNAATMIEKARQNY---------------------- 99 (279)
T ss_dssp HHHHH-CCCTTCEEEEETCTTSHHHHHHHH------TTCEEEEEESCHHHHHHHHHHC----------------------
T ss_pred HHHHh-CCCCCCEEEEecCCCCHHHHHHHh------CCCeEEEEECCHHHHHHHHhhC----------------------
Confidence 44433 334568999999999999999987 2789999999998887765421
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+ +.+..++..+ ++. +++||+|+..... ........++++.+.|+|||++++.....
T Consensus 100 ---~~---~~~~~~d~~~-~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 100 ---PH---LHFDVADARN-FRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp ---TT---SCEEECCTTT-CCC-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred ---CC---CEEEECChhh-CCc-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 11 5566676655 332 5789999987543 23556688999999999999999876654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-09 Score=97.39 Aligned_cols=135 Identities=17% Similarity=0.204 Sum_probs=94.0
Q ss_pred hHHHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 142 SYGAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 142 ~~g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
++..++..+++.. ++.+|||||||+|..++.++.. . ++.+++++|+++.+.+.+++
T Consensus 94 ~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~---~-~~~~v~~vD~s~~~l~~a~~------------------ 151 (276)
T 2b3t_A 94 DTECLVEQALARLPEQPCRILDLGTGTGAIALALASE---R-PDCEIIAVDRMPDAVSLAQR------------------ 151 (276)
T ss_dssp THHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHH---C-TTSEEEEECSSHHHHHHHHH------------------
T ss_pred hHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHh---C-CCCEEEEEECCHHHHHHHHH------------------
Confidence 3445666665553 4679999999999999999974 2 47899999999999988876
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-------------C-------------CcHHHHHHHH
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-------------F-------------NSAWADINRA 273 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-------------~-------------~~v~~dl~~~ 273 (327)
|+...+.. + +.+..++..+.++ .++||+|+.+.... + ......++.+
T Consensus 152 -n~~~~~~~-~---v~~~~~d~~~~~~--~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~ 224 (276)
T 2b3t_A 152 -NAQHLAIK-N---IHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQS 224 (276)
T ss_dssp -HHHHHTCC-S---EEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHH
T ss_pred -HHHHcCCC-c---eEEEEcchhhhcc--cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHH
Confidence 33333332 2 8888888776543 46899999973110 0 1234567889
Q ss_pred HccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 274 WRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 274 ~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
.++|+|||++++..... -.+.+.++++..|++
T Consensus 225 ~~~LkpgG~l~~~~~~~------~~~~~~~~l~~~Gf~ 256 (276)
T 2b3t_A 225 RNALVSGGFLLLEHGWQ------QGEAVRQAFILAGYH 256 (276)
T ss_dssp GGGEEEEEEEEEECCSS------CHHHHHHHHHHTTCT
T ss_pred HHhcCCCCEEEEEECch------HHHHHHHHHHHCCCc
Confidence 99999999999864433 134455566666664
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-09 Score=105.31 Aligned_cols=138 Identities=14% Similarity=0.159 Sum_probs=96.3
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-c-cC-Cc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-N-AI-DS 230 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g-~~-~~ 230 (327)
.++.+|||||||+|..+..+++. .+++.+|+++|+++.+.+.++++.. .+.... | .. .+
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~l~~a~~~~~---------------~~~~~~~g~~~~~~ 143 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKL---VGEHGKVIGVDMLDNQLEVARKYVE---------------YHAEKFFGSPSRSN 143 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHH---HTTTCEEEEEECCHHHHHHHHHTHH---------------HHHHHHHSSTTCCC
T ss_pred CCCCEEEEecCccCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHHHHH---------------HhhhhcccccCCCc
Confidence 35789999999999999999985 4567899999999999988876421 010000 1 10 12
Q ss_pred ccceEeeecchhhhh-----hhcCCcEeEEEEcCCCC-CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh--------
Q 041517 231 VLPVPFSSGSALTKL-----CEWGVVGDLIEIDAGHD-FNSAWADINRAWRILRPGGVIFGHDYFTAADNRG-------- 296 (327)
Q Consensus 231 v~~V~~~~gda~~~L-----~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G-------- 296 (327)
+.+..++..+.. +..+++||+|+...... .+.....++++.++|+|||++++.++......+.
T Consensus 144 ---v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 220 (383)
T 4fsd_A 144 ---VRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPIL 220 (383)
T ss_dssp ---EEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHH
T ss_pred ---eEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHH
Confidence 888888876531 22247899999876432 3456788999999999999999988765322111
Q ss_pred ---------HHHHHHHHHHHcCCeE
Q 041517 297 ---------VRRAVNLFAKINGLKV 312 (327)
Q Consensus 297 ---------V~~Av~~f~~~~gl~v 312 (327)
-.+.+..+++..|+++
T Consensus 221 ~~~~~~~~~~~~~~~~ll~~aGF~~ 245 (383)
T 4fsd_A 221 YGECLGGALYLEDFRRLVAEAGFRD 245 (383)
T ss_dssp HHTTCTTCCBHHHHHHHHHHTTCCC
T ss_pred hhcccccCCCHHHHHHHHHHCCCce
Confidence 1155666777888863
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.8e-11 Score=106.04 Aligned_cols=112 Identities=14% Similarity=0.124 Sum_probs=81.8
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+....+..+|||+|||+|..++.+++. +.+|+++|+++.+.+.+++ |+...
T Consensus 69 l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~------~~~v~~vD~s~~~~~~a~~-------------------~~~~~ 123 (241)
T 3gdh_A 69 IAGRVSQSFKCDVVVDAFCGVGGNTIQFALT------GMRVIAIDIDPVKIALARN-------------------NAEVY 123 (241)
T ss_dssp HHHHHHHHSCCSEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHH-------------------HHHHT
T ss_pred HHHHhhhccCCCEEEECccccCHHHHHHHHc------CCEEEEEECCHHHHHHHHH-------------------HHHHc
Confidence 3444444447889999999999999999984 5899999999999888776 33333
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-HHHHHHHHHccCCCCeEEEEEc
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+..++ +.+..+|..+..+ +.+||+|+.|....... ....+..+.++|+|||+++++.
T Consensus 124 ~~~~~---~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 124 GIADK---IEFICGDFLLLAS--FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp TCGGG---EEEEESCHHHHGG--GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCCcC---eEEEECChHHhcc--cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHHH
Confidence 43233 8899999887542 47899999986543322 1124556788999999977765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.03 E-value=6e-10 Score=97.68 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=89.8
Q ss_pred HHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.+..++...+ ..+|||||||+|..+..+++. +.+++++|+++.+.+.+++. .
T Consensus 33 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-------------------~-- 85 (211)
T 3e23_A 33 TLTKFLGELPAGAKILELGCGAGYQAEAMLAA------GFDVDATDGSPELAAEASRR-------------------L-- 85 (211)
T ss_dssp HHHHHHTTSCTTCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHH-------------------H--
T ss_pred HHHHHHHhcCCCCcEEEECCCCCHHHHHHHHc------CCeEEEECCCHHHHHHHHHh-------------------c--
Confidence 3444444444 679999999999999999984 67999999999888766552 1
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-C--cHHHHHHHHHccCCCCeEEEEEcCCCCCCch------
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-N--SAWADINRAWRILRPGGVIFGHDYFTAADNR------ 295 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~--~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~------ 295 (327)
+ +.+..++..+ ++ .+++||+|+......+ . .....++.+.+.|+|||++++..........
T Consensus 86 -~-------~~~~~~d~~~-~~-~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 155 (211)
T 3e23_A 86 -G-------RPVRTMLFHQ-LD-AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARY 155 (211)
T ss_dssp -T-------SCCEECCGGG-CC-CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCE
T ss_pred -C-------CceEEeeecc-CC-CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchh
Confidence 1 3444555444 23 4689999998754322 2 4567899999999999999987544311000
Q ss_pred ---hHHHHHHHHHHHcC-CeEE
Q 041517 296 ---GVRRAVNLFAKING-LKVQ 313 (327)
Q Consensus 296 ---GV~~Av~~f~~~~g-l~v~ 313 (327)
--.+.+..+++..| +++.
T Consensus 156 ~~~~~~~~~~~~l~~aG~f~~~ 177 (211)
T 3e23_A 156 YNYPSEEWLRARYAEAGTWASV 177 (211)
T ss_dssp ECCCCHHHHHHHHHHHCCCSEE
T ss_pred ccCCCHHHHHHHHHhCCCcEEE
Confidence 03456666777788 7754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-10 Score=108.28 Aligned_cols=109 Identities=14% Similarity=0.031 Sum_probs=81.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..++.+|.. ..++.+|+++|+++.+.+.+++ ++...+..++ +
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~~~~a~~-------------------~~~~~~~~~~---v 172 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYS---ACPGVQLVGIDYDPEALDGATR-------------------LAAGHALAGQ---I 172 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCT---TCTTCEEEEEESCHHHHHHHHH-------------------HHTTSTTGGG---E
T ss_pred CCCEEEEecCCCCHHHHHHHHh---cCCCCeEEEEECCHHHHHHHHH-------------------HHHhcCCCCc---e
Confidence 4679999999999999998742 3558899999999999888776 3333344334 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC-CcHH---HHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF-NSAW---ADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~v~---~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..++..+. +. .++||+|+......+ +... ..++.+.+.|+|||++++.++..
T Consensus 173 ~~~~~d~~~~-~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 173 TLHRQDAWKL-DT-REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp EEEECCGGGC-CC-CSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred EEEECchhcC-Cc-cCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 8888988773 32 388999998653222 2222 36899999999999999998654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.1e-10 Score=101.49 Aligned_cols=115 Identities=7% Similarity=-0.229 Sum_probs=75.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hcc---CCc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNA---IDS 230 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~---~~~ 230 (327)
+..+|||+|||+|..+.+||+. +.+|++||+++.+.+.|++........ .++.. .+. ...
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~----------~~~~~~~~~~~~~~~ 131 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR------GHTVVGVEISEIGIREFFAEQNLSYTE----------EPLAEIAGAKVFKSS 131 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEE----------EECTTSTTCEEEEET
T ss_pred CCCeEEEeCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHhccccccc----------ccccccccccccccC
Confidence 5789999999999999999984 669999999999998775422100000 00000 000 000
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCC---CCcHHHHHHHHHccCCCCeEEEE
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD---FNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
...|.+..+|..+.-....++||+|+.-+... .+.....++.+.++|+|||++++
T Consensus 132 ~~~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l 189 (252)
T 2gb4_A 132 SGSISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLV 189 (252)
T ss_dssp TSSEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred CCceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 01288889988764222237899999654321 22344689999999999999864
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=100.44 Aligned_cols=109 Identities=13% Similarity=0.012 Sum_probs=80.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+ ...++.+|||||||+|..+..+++. +.+|+++|+++.+.+.+++. +...
T Consensus 112 ~~~~~-~~~~~~~vLD~GcG~G~~~~~l~~~------g~~v~~vD~s~~~~~~a~~~-------------------~~~~ 165 (286)
T 3m70_A 112 VVDAA-KIISPCKVLDLGCGQGRNSLYLSLL------GYDVTSWDHNENSIAFLNET-------------------KEKE 165 (286)
T ss_dssp HHHHH-HHSCSCEEEEESCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHH-------------------HHHT
T ss_pred HHHHh-hccCCCcEEEECCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHH-------------------HHHc
Confidence 44443 3447899999999999999999984 56999999999988877652 2222
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC---CCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD---FNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+. .+.+..++..+... +++||+|+...... .+.....++.+.++|+|||++++-.
T Consensus 166 ~~-----~~~~~~~d~~~~~~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 166 NL-----NISTALYDINAANI--QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp TC-----CEEEEECCGGGCCC--CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CC-----ceEEEEeccccccc--cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 32 27888888766322 68899999876432 2335578999999999999865533
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=107.49 Aligned_cols=142 Identities=17% Similarity=0.146 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..++...+..+|||+|||.|..+..+++. ++..++|+++|+++.+.+.+++ |+..
T Consensus 249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~---~~~~~~v~a~D~s~~~l~~~~~-------------------~~~~ 306 (450)
T 2yxl_A 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAEL---MKNKGKIYAFDVDKMRMKRLKD-------------------FVKR 306 (450)
T ss_dssp HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHH---TTTCSEEEEECSCHHHHHHHHH-------------------HHHH
T ss_pred HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHH---cCCCCEEEEEcCCHHHHHHHHH-------------------HHHH
Confidence 44455555545679999999999999999986 3435899999999988776655 4444
Q ss_pred hccCCcccceEeeecchhhhhhhcC-CcEeEEEEcCCCCCCcH-----------------------HHHHHHHHccCCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWG-VVGDLIEIDAGHDFNSA-----------------------WADINRAWRILRPG 280 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~-~~fDLIfIDa~h~~~~v-----------------------~~dl~~~~~lL~pG 280 (327)
.|.. . +.+..+|+.+....+. ++||+|++|+......+ ...++.+.++|+||
T Consensus 307 ~g~~-~---v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 382 (450)
T 2yxl_A 307 MGIK-I---VKPLVKDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG 382 (450)
T ss_dssp TTCC-S---EEEECSCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred cCCC-c---EEEEEcChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4432 2 7777888766422233 68999999964322111 45689999999999
Q ss_pred eEEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEEE
Q 041517 281 GVIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQI 314 (327)
Q Consensus 281 GvIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~~ 314 (327)
|++++.++...+ ..-.+.+..|.+.+ ++++.+
T Consensus 383 G~lvy~tcs~~~--~ene~~v~~~l~~~~~~~~~~ 415 (450)
T 2yxl_A 383 GRLLYTTCSIFK--EENEKNIRWFLNVHPEFKLVP 415 (450)
T ss_dssp EEEEEEESCCCG--GGTHHHHHHHHHHCSSCEECC
T ss_pred cEEEEEeCCCCh--hhHHHHHHHHHHhCCCCEEee
Confidence 999999887632 11234556666665 566544
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=101.23 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=85.4
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+..+++.. +..+|||||||+|..+..+++.. +.+|+++|+++.+.+.+++ +
T Consensus 77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-----~~~v~gvD~s~~~~~~a~~-------------------~ 132 (318)
T 2fk8_A 77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-----DVNVIGLTLSKNQHARCEQ-------------------V 132 (318)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC-----CCEEEEEECCHHHHHHHHH-------------------H
Confidence 3455555543 35699999999999999999852 4699999999998887765 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...+..++ +.+..++..+. +++||+|+......+ +.....++.+.++|+|||++++.++..
T Consensus 133 ~~~~~~~~~---v~~~~~d~~~~----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 133 LASIDTNRS---RQVLLQGWEDF----AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp HHTSCCSSC---EEEEESCGGGC----CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred HHhcCCCCc---eEEEECChHHC----CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 333344334 77888876542 378999997644222 345678999999999999999988875
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.7e-10 Score=101.79 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=79.1
Q ss_pred HHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
++..+.+.. ++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++.. .
T Consensus 40 ~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~-------------------~- 93 (263)
T 3pfg_A 40 LAALVRRHSPKAASLLDVACGTGMHLRHLADS------FGTVEGLELSADMLAIARRRN-------------------P- 93 (263)
T ss_dssp HHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT------SSEEEEEESCHHHHHHHHHHC-------------------T-
T ss_pred HHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhC-------------------C-
Confidence 344444333 3589999999999999999874 568999999998887776521 1
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcC-CCCC----CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA-GHDF----NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~----~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+ +.+..++..+. +. +++||+|++.. ...+ ......++.+.+.|+|||+++++++.
T Consensus 94 -----~---~~~~~~d~~~~-~~-~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 94 -----D---AVLHHGDMRDF-SL-GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp -----T---SEEEECCTTTC-CC-SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred -----C---CEEEECChHHC-Cc-cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 1 67777776652 22 68999999875 2222 24456789999999999999998754
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=100.45 Aligned_cols=152 Identities=13% Similarity=-0.010 Sum_probs=87.7
Q ss_pred CCchHHHHHHHHHhh---cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeC-CCCChhhhhhhcccCccccchHH
Q 041517 139 GWGSYGAVFGNLIDK---VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD-FRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 139 gw~~~g~lL~~L~~~---~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~-~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
-|+....+...+.+. .+.++|||||||+|..++.+++. + ..+|+++|. ++.+.+.++++...
T Consensus 60 ~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~----~-~~~v~~~D~s~~~~~~~a~~n~~~--------- 125 (281)
T 3bzb_A 60 VWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLA----G-ADQVVATDYPDPEILNSLESNIRE--------- 125 (281)
T ss_dssp --CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHT----T-CSEEEEEECSCHHHHHHHHHHHHT---------
T ss_pred eecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHc----C-CCEEEEEeCCCHHHHHHHHHHHHH---------
Confidence 344444455555443 35679999999999999998873 2 359999999 89998888774310
Q ss_pred HHHHHHHH-hhhccC----CcccceEee---ecchhhhhhh--cCCcEeEEEE-cCCCCCCcHHHHHHHHHccCC---C-
Q 041517 215 YFQFLQNV-IYQNAI----DSVLPVPFS---SGSALTKLCE--WGVVGDLIEI-DAGHDFNSAWADINRAWRILR---P- 279 (327)
Q Consensus 215 ~~~Fl~nv-~~~g~~----~~v~~V~~~---~gda~~~L~~--l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~---p- 279 (327)
|. ...+.. ++ +.+. .++..+.+.. .+.+||+|+. |.-+........++.+.++|+ |
T Consensus 126 ------N~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~ 196 (281)
T 3bzb_A 126 ------HTANSCSSETVKRAS---PKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPAND 196 (281)
T ss_dssp ------TCC----------CC---CEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTC
T ss_pred ------hhhhhcccccCCCCC---eEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCC
Confidence 00 111111 12 4443 3332332321 2478999986 776655556678899999999 9
Q ss_pred -CeEEEEE-cCCCCCCchhHHHHHHHHHHHcC-CeEEE
Q 041517 280 -GGVIFGH-DYFTAADNRGVRRAVNLFAKING-LKVQI 314 (327)
Q Consensus 280 -GGvIi~d-D~~~~~~~~GV~~Av~~f~~~~g-l~v~~ 314 (327)
||++++- .... +........+.+.+...| +++..
T Consensus 197 ~gG~l~v~~~~~~-~~~~~~~~~~~~~l~~~G~f~v~~ 233 (281)
T 3bzb_A 197 PTAVALVTFTHHR-PHLAERDLAFFRLVNADGALIAEP 233 (281)
T ss_dssp TTCEEEEEECC---------CTHHHHHHHHSTTEEEEE
T ss_pred CCCEEEEEEEeee-cccchhHHHHHHHHHhcCCEEEEE
Confidence 9965442 2211 111111223334556778 76653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=98.67 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=81.2
Q ss_pred HHHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 144 GAVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 144 g~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
..++..+++.. ++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~------------------ 82 (252)
T 1wzn_A 27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRK------------------ 82 (252)
T ss_dssp HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHH------------------
Confidence 34555555443 3579999999999999999983 57999999999998877662
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC---CcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF---NSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~---~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
....+. .+.+..++..+. + ...+||+|++... +.+ +.....++.+.+.|+|||+++++-.
T Consensus 83 -~~~~~~-----~v~~~~~d~~~~-~-~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 83 -AKERNL-----KIEFLQGDVLEI-A-FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp -HHHTTC-----CCEEEESCGGGC-C-CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -HHhcCC-----ceEEEECChhhc-c-cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 222222 277788887663 2 2468999997532 222 2345678999999999999998643
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4.3e-10 Score=104.11 Aligned_cols=99 Identities=13% Similarity=-0.000 Sum_probs=76.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCcccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v~~ 233 (327)
.+++|||||||+|..+..+++ . + .+|+++|+++.+.+.++++.. .+. .+. ..+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~----~-~-~~v~~veid~~~i~~ar~~~~----------------~~~-~~~~~~r--- 125 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFK----Y-D-THIDFVQADEKILDSFISFFP----------------HFH-EVKNNKN--- 125 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTT----S-S-CEEEEECSCHHHHGGGTTTST----------------THH-HHHTCTT---
T ss_pred CCCEEEEEeCCcCHHHHHHHh----C-C-CEEEEEECCHHHHHHHHHHHH----------------hhc-cccCCCe---
Confidence 578999999999999988876 3 3 899999999999998887542 110 011 123
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+|+.+.+ ++||+|++|+.. + ...++.+.+.|+|||++++..
T Consensus 126 v~~~~~D~~~~~----~~fD~Ii~d~~d---p-~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 126 FTHAKQLLDLDI----KKYDLIFCLQEP---D-IHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp EEEESSGGGSCC----CCEEEEEESSCC---C-HHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEechHHHHH----hhCCEEEECCCC---h-HHHHHHHHHhcCCCcEEEEEc
Confidence 888888887654 689999999643 2 247999999999999999863
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.2e-10 Score=99.74 Aligned_cols=116 Identities=14% Similarity=0.067 Sum_probs=79.8
Q ss_pred HHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhcc--CCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQ--LGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~--l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..|.... +..+|||||||+|+.+..+++.+.. ..+.++|+++|.++.+.+.+++..
T Consensus 73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~------------------ 134 (227)
T 1r18_A 73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL------------------ 134 (227)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHH------------------
T ss_pred HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHH------------------
Confidence 4555554233 3579999999999999999985320 001369999999999888877632
Q ss_pred Hhhhcc----CCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 222 VIYQNA----IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 222 v~~~g~----~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
...+. ..+ +.+..++..+.++. ..+||+|++++....-. +.+.+.|+|||++++.-.
T Consensus 135 -~~~~~~~~~~~~---v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~~~-----~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 135 -NTDDRSMLDSGQ---LLIVEGDGRKGYPP-NAPYNAIHVGAAAPDTP-----TELINQLASGGRLIVPVG 195 (227)
T ss_dssp -HHHHHHHHHHTS---EEEEESCGGGCCGG-GCSEEEEEECSCBSSCC-----HHHHHTEEEEEEEEEEES
T ss_pred -HhcCccccCCCc---eEEEECCcccCCCc-CCCccEEEECCchHHHH-----HHHHHHhcCCCEEEEEEe
Confidence 11110 012 77888887764433 36899999997754322 788999999999988543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.6e-10 Score=102.39 Aligned_cols=148 Identities=15% Similarity=0.019 Sum_probs=87.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHh---ccCCCC-----cEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh---
Q 041517 155 RPRVIIEVGSFLGASALHMANLT---RQLGLD-----SQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI--- 223 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~---r~l~~~-----~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~--- 223 (327)
++.+|||||+|+|++++.++++. +...++ .++++||.++-..+..++....-. +-.....+.++...
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p--~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWP--ELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCG--GGHHHHHHHHHTCCCSC
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcCh--hHHHHHHHHHHhccccc
Confidence 45799999999999999988864 210332 589999999843221111000000 00001111111100
Q ss_pred ----hhccCCcccceEeeecchhhhhhhcCC----cEeEEEEcCCCC--CCc--HHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 224 ----YQNAIDSVLPVPFSSGSALTKLCEWGV----VGDLIEIDAGHD--FNS--AWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 224 ----~~g~~~~v~~V~~~~gda~~~L~~l~~----~fDLIfIDa~h~--~~~--v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
...+.+....+++..||+.+.|+.+.. +||+||+|+... .+. ....++.+.++|+|||+++. |..
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa- 214 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS- 214 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC-
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC-
Confidence 001111113488899999999988754 799999998543 222 23679999999999999995 332
Q ss_pred CCchhHHHHHHHHHHHcCCeEE
Q 041517 292 ADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 292 ~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
..-|++++.+ -|++|.
T Consensus 215 --a~~vrr~L~~----aGF~v~ 230 (257)
T 2qy6_A 215 --AGFVRRGLQE----AGFTMQ 230 (257)
T ss_dssp --BHHHHHHHHH----HTEEEE
T ss_pred --CHHHHHHHHH----CCCEEE
Confidence 1235555544 466655
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=96.41 Aligned_cols=113 Identities=12% Similarity=0.096 Sum_probs=80.7
Q ss_pred HHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
++..+.+.. +..+|||||||+|..+..+++. ..+++++|+++.+.+.+++. ...
T Consensus 28 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-------------------~~~ 82 (227)
T 1ve3_A 28 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREY-------------------AKS 82 (227)
T ss_dssp HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHH-------------------HHH
T ss_pred HHHHHHHhcCCCCeEEEEeccCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHH-------------------HHh
Confidence 444444443 3679999999999999999884 23999999999988877653 221
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC--C-CCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG--H-DFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~--h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+ .+ +.+..++..+ ++..+++||+|+.... + ........++.+.+.|+|||++++.+..
T Consensus 83 ~~--~~---~~~~~~d~~~-~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 83 RE--SN---VEFIVGDARK-LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TT--CC---CEEEECCTTS-CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cC--CC---ceEEECchhc-CCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 11 12 7777777655 2222468999998765 3 2234456789999999999999987765
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=108.04 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=81.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC-Ccccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI-DSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~-~~v~~ 233 (327)
+..+|||||||+|+.++.+|+.. + ..+|++||.++.+.+.|+.+.+ .+.+|+...|+. ++
T Consensus 242 ~g~~VLDLGCGsG~la~~LA~~~---g-~~~V~GVDis~~~l~~A~~Ml~------------~ar~~~~~~Gl~~~n--- 302 (433)
T 1u2z_A 242 KGDTFMDLGSGVGNCVVQAALEC---G-CALSFGCEIMDDASDLTILQYE------------ELKKRCKLYGMRLNN--- 302 (433)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH---C-CSEEEEEECCHHHHHHHHHHHH------------HHHHHHHHTTBCCCC---
T ss_pred CCCEEEEeCCCcCHHHHHHHHHC---C-CCEEEEEeCCHHHHHHHHHhHH------------HHHHHHHHcCCCCCc---
Confidence 46799999999999999999852 2 4689999999998887743221 223355544532 33
Q ss_pred eEeeecchhhh---hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTK---LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~---L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
|.+..++.... +.....+||+|++....-.+.....++++.+.|+|||.|++.|...
T Consensus 303 V~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 303 VEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred eEEEEcCccccccccccccCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 77777654321 2222368999998633222455567899999999999999987554
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-09 Score=97.13 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=74.9
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. ..+++++|+++.+.+.+++. +...+ +
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~~-------------------~~~~~---~--- 117 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEI------VDKVVSVEINEKMYNYASKL-------------------LSYYN---N--- 117 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHH-------------------HTTCS---S---
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH------cCEEEEEeCCHHHHHHHHHH-------------------HhhcC---C---
Confidence 34679999999999999999985 37999999999888877652 22222 2
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+..++..+.++ .+++||+|+++.....-. +.+.+.|+|||++++....
T Consensus 118 v~~~~~d~~~~~~-~~~~fD~v~~~~~~~~~~-----~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 118 IKLILGDGTLGYE-EEKPYDRVVVWATAPTLL-----CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESCGGGCCG-GGCCEEEEEESSBBSSCC-----HHHHHTEEEEEEEEEEECS
T ss_pred eEEEECCcccccc-cCCCccEEEECCcHHHHH-----HHHHHHcCCCcEEEEEEcC
Confidence 7888888776433 246899999987643332 5788999999999887543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=97.64 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=76.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh--hh--ccCCc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI--YQ--NAIDS 230 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~--~~--g~~~~ 230 (327)
+..+|||||||+|..++.+|+. .++.+|++||+++.+.+.++++.. .+-. .. +. .
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~l~~a~~~~~---------------~~~~~~~~~~~~-~- 107 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPA----FPEDLILGMEIRVQVTNYVEDRII---------------ALRNNTASKHGF-Q- 107 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHH----STTSEEEEEESCHHHHHHHHHHHH---------------HHHHTC-CCSTT-T-
T ss_pred CCCEEEEEcCCCCHHHHHHHHh----CCCCCEEEEEcCHHHHHHHHHHHH---------------HHhhccccccCC-C-
Confidence 4568999999999999999985 457899999999999888766321 0100 00 22 1
Q ss_pred ccceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCc---------HHHHHHHHHccCCCCeEEEEE
Q 041517 231 VLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNS---------AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~---------v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+.+..+|+.+.++.. .+.+|.|++.-.-.+.. ....++.+.++|+|||++++.
T Consensus 108 --nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 108 --NINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp --TEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred --cEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 2888889887756532 47899998753222110 026889999999999998873
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=105.95 Aligned_cols=107 Identities=18% Similarity=0.105 Sum_probs=80.3
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.++|||||||+|..++.+++. + ..+|++||.+ .+.+.+++ ++...++.++
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~----g-~~~V~gvD~s-~~~~~a~~-------------------~~~~~~~~~~-- 113 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA----G-ARKVYAVEAT-KMADHARA-------------------LVKANNLDHI-- 113 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT----T-CSEEEEEESS-TTHHHHHH-------------------HHHHTTCTTT--
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc----C-CCEEEEEccH-HHHHHHHH-------------------HHHHcCCCCe--
Confidence 345789999999999999999984 2 3499999999 99888766 3444455445
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCC---C-CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHD---F-NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---~-~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
|.+..++..+.. +.++||+|+.+.... + ......++.+.++|+|||+++++...
T Consensus 114 -v~~~~~d~~~~~--~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~ 171 (376)
T 3r0q_C 114 -VEVIEGSVEDIS--LPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR 171 (376)
T ss_dssp -EEEEESCGGGCC--CSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred -EEEEECchhhcC--cCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence 888899887632 237899999976321 1 22445678888999999999987664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-09 Score=97.59 Aligned_cols=103 Identities=14% Similarity=0.058 Sum_probs=74.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..+..+++. .++.++|++||+++.+.+.+.+ +.... .+ +
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~---~g~~~~v~gvD~s~~~i~~~~~-------------------~a~~~---~~---v 128 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDI---VGPDGLVYAVEFSHRSGRDLIN-------------------LAKKR---TN---I 128 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH---HCTTCEEEEECCCHHHHHHHHH-------------------HHHHC---TT---E
T ss_pred CCCEEEEEcccCCHHHHHHHHH---hCCCcEEEEEECCHHHHHHHHH-------------------Hhhcc---CC---e
Confidence 3569999999999999999985 4567899999999876543322 11111 12 7
Q ss_pred Eeeecchhhh--hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTK--LCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~--L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..++..+. ++..+++||+|+.|... .......++.+.+.|+|||++++.
T Consensus 129 ~~~~~d~~~~~~~~~~~~~~D~V~~~~~~-~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 129 IPVIEDARHPHKYRMLIAMVDVIFADVAQ-PDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp EEECSCTTCGGGGGGGCCCEEEEEECCCC-TTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcccCChhhhcccCCcEEEEEEcCCC-ccHHHHHHHHHHHHcCCCeEEEEE
Confidence 7888887663 34446789999998763 222234478899999999999983
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.99 E-value=8.9e-10 Score=96.14 Aligned_cols=103 Identities=10% Similarity=-0.035 Sum_probs=78.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.++.. .++.+++++|+++.+.+.+++ |+...+.. . +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~-------------------~~~~~~~~-~---v 117 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIV----RPEAHFTLLDSLGKRVRFLRQ-------------------VQHELKLE-N---I 117 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHH----CTTSEEEEEESCHHHHHHHHH-------------------HHHHTTCS-S---E
T ss_pred CCCeEEEECCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHH-------------------HHHHcCCC-C---e
Confidence 4689999999999999999985 247899999999998887765 33332321 1 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..++..+.. ..++||+|+..+. ......++.+.+.|+|||++++....
T Consensus 118 ~~~~~d~~~~~--~~~~~D~i~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 118 EPVQSRVEEFP--SEPPFDGVISRAF---ASLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp EEEECCTTTSC--CCSCEEEEECSCS---SSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred EEEecchhhCC--ccCCcCEEEEecc---CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 77788776632 2368999998654 34557899999999999999887543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3e-09 Score=99.28 Aligned_cols=115 Identities=13% Similarity=0.117 Sum_probs=83.7
Q ss_pred hHHHHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 142 SYGAVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 142 ~~g~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
++..++..+++.. +..+|||+|||+|..++.++.. ++.+|+++|+++.+.+.+++
T Consensus 107 ~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-----~~~~v~~vDis~~al~~A~~----------------- 164 (284)
T 1nv8_A 107 ETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-----SDAIVFATDVSSKAVEIARK----------------- 164 (284)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-----SSCEEEEEESCHHHHHHHHH-----------------
T ss_pred hHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-----CCCEEEEEECCHHHHHHHHH-----------------
Confidence 3444555544432 4579999999999999999983 57899999999999988876
Q ss_pred HHHHhhhccCCcccceEeeecchhhhhhhcCCcE---eEEEEcCCC-----------CCCcH---------HHHHHHHH-
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVG---DLIEIDAGH-----------DFNSA---------WADINRAW- 274 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~f---DLIfIDa~h-----------~~~~v---------~~dl~~~~- 274 (327)
|+...+..++ +.+..++..+.++ ++| |+|+.+.-. .+++. ...++.+.
T Consensus 165 --n~~~~~l~~~---v~~~~~D~~~~~~---~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~ 236 (284)
T 1nv8_A 165 --NAERHGVSDR---FFVRKGEFLEPFK---EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFG 236 (284)
T ss_dssp --HHHHTTCTTS---EEEEESSTTGGGG---GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHH
T ss_pred --HHHHcCCCCc---eEEEECcchhhcc---cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHH
Confidence 4444455444 8888998877543 468 999997210 02222 25788999
Q ss_pred ccCCCCeEEEEE
Q 041517 275 RILRPGGVIFGH 286 (327)
Q Consensus 275 ~lL~pGGvIi~d 286 (327)
+.|+|||++++.
T Consensus 237 ~~l~pgG~l~~e 248 (284)
T 1nv8_A 237 RYDTSGKIVLME 248 (284)
T ss_dssp HCCCTTCEEEEE
T ss_pred hcCCCCCEEEEE
Confidence 999999999983
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-09 Score=99.89 Aligned_cols=129 Identities=9% Similarity=-0.061 Sum_probs=81.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|+.+..+|+. +++.++|+++|.++.+.+...+ .... . .+ +
T Consensus 76 ~g~~VLDlG~GtG~~t~~la~~---v~~~G~V~avD~s~~~l~~l~~-------------------~a~~--r-~n---v 127 (232)
T 3id6_C 76 KGTKVLYLGAASGTTISHVSDI---IELNGKAYGVEFSPRVVRELLL-------------------VAQR--R-PN---I 127 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHH---HTTTSEEEEEECCHHHHHHHHH-------------------HHHH--C-TT---E
T ss_pred CCCEEEEEeecCCHHHHHHHHH---hCCCCEEEEEECcHHHHHHHHH-------------------Hhhh--c-CC---e
Confidence 3579999999999999999985 5678999999998876431111 1100 0 12 7
Q ss_pred Eeeecchhhhh--hhcCCcEeEEEEcCCCCCCcHHHHH-HHHHccCCCCeEEEEEcCCC----CCCchhHHHHHHHHHHH
Q 041517 235 PFSSGSALTKL--CEWGVVGDLIEIDAGHDFNSAWADI-NRAWRILRPGGVIFGHDYFT----AADNRGVRRAVNLFAKI 307 (327)
Q Consensus 235 ~~~~gda~~~L--~~l~~~fDLIfIDa~h~~~~v~~dl-~~~~~lL~pGGvIi~dD~~~----~~~~~GV~~Av~~f~~~ 307 (327)
.+..+|+.... ..+.++||+||+|..+.. ....+ +.+.+.|+|||.+++--... ..+...+.+-+..+++.
T Consensus 128 ~~i~~Da~~~~~~~~~~~~~D~I~~d~a~~~--~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~ 205 (232)
T 3id6_C 128 FPLLADARFPQSYKSVVENVDVLYVDIAQPD--QTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLEN 205 (232)
T ss_dssp EEEECCTTCGGGTTTTCCCEEEEEECCCCTT--HHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHH
T ss_pred EEEEcccccchhhhccccceEEEEecCCChh--HHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHH
Confidence 77778766421 123478999999987732 22444 45556999999988751111 00111233445556667
Q ss_pred cCCeEE
Q 041517 308 NGLKVQ 313 (327)
Q Consensus 308 ~gl~v~ 313 (327)
.|+++.
T Consensus 206 ~gf~~~ 211 (232)
T 3id6_C 206 SNFETI 211 (232)
T ss_dssp TTEEEE
T ss_pred CCCEEE
Confidence 787755
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.9e-10 Score=104.38 Aligned_cols=130 Identities=16% Similarity=0.089 Sum_probs=81.7
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCc-cc------------c----------
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM-VN------------G---------- 210 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~-~~------------g---------- 210 (327)
.++++|||||||+|..++.+++. + +..+|++||+++.+.+.|++...... .. +
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~---~-~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACK---W-GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTV 120 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHH---T-CCSEEEEEESCHHHHHHHHHTC------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHH---c-CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 35789999999999999999985 3 36799999999999998887542100 00 0
Q ss_pred -chHHHHHHHH----HHh----------hhccCCcccceEeeecchhhh----hhhcCCcEeEEEEcCCC-------CCC
Q 041517 211 -NVLLYFQFLQ----NVI----------YQNAIDSVLPVPFSSGSALTK----LCEWGVVGDLIEIDAGH-------DFN 264 (327)
Q Consensus 211 -~~~~~~~Fl~----nv~----------~~g~~~~v~~V~~~~gda~~~----L~~l~~~fDLIfIDa~h-------~~~ 264 (327)
....+..-+. .+. ...+.+ .|.+..++..+. ++...+.||+|+.-... ...
T Consensus 121 ~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~---~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~ 197 (292)
T 3g07_A 121 RKRSCFPASLTASRGPIAAPQVPLDGADTSVFPN---NVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDE 197 (292)
T ss_dssp ---------------------CCSSTTCCSSTTT---TEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHH
T ss_pred cccccccchhhhccCccccccccccccccccccc---cceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHH
Confidence 0000000000 000 000001 278888876532 12235799999987652 122
Q ss_pred cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 265 SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 265 ~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.....++.+.++|+|||++++..-.|
T Consensus 198 ~~~~~l~~~~~~LkpGG~lil~~~~~ 223 (292)
T 3g07_A 198 GLKRMFRRIYRHLRPGGILVLEPQPW 223 (292)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEECCCH
T ss_pred HHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 55677999999999999999976655
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=98.69 Aligned_cols=137 Identities=14% Similarity=0.147 Sum_probs=95.7
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
.+..+++.. ++.+|||||||+|..+..+++.. +.+|+++|+++.+.+.+++...
T Consensus 43 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-----~~~v~~vD~s~~~~~~a~~~~~------------------ 99 (266)
T 3ujc_A 43 ATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-----GAHTHGIDICSNIVNMANERVS------------------ 99 (266)
T ss_dssp HHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-----CCEEEEEESCHHHHHHHHHTCC------------------
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHhh------------------
Confidence 445555443 35699999999999999999852 5799999999998887766331
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcCCCCC--Cch-h
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDYFTAA--DNR-G 296 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~~~--~~~-G 296 (327)
.. .+ +.+..++..+. +..+++||+|+.... |.. ......++.+.++|+|||++++.++.... .+. .
T Consensus 100 -~~---~~---~~~~~~d~~~~-~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 171 (266)
T 3ujc_A 100 -GN---NK---IIFEANDILTK-EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDE 171 (266)
T ss_dssp -SC---TT---EEEEECCTTTC-CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHH
T ss_pred -cC---CC---eEEEECccccC-CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHH
Confidence 00 12 77888877653 333579999998654 323 45667899999999999999999875421 000 0
Q ss_pred -------------HHHHHHHHHHHcCCeEE
Q 041517 297 -------------VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 -------------V~~Av~~f~~~~gl~v~ 313 (327)
-...+..+++..|+++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~ 201 (266)
T 3ujc_A 172 FKEYVKQRKYTLITVEEYADILTACNFKNV 201 (266)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCCeEE
Confidence 13455666777887654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.6e-10 Score=97.81 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=80.6
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
.+..++...+..+|||||||+|..+..+++. + ..+++++|+++.+.+.+++... .
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~-------------------~- 88 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH----G-ASYVLGLDLSEKMLARARAAGP-------------------D- 88 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHTSC-------------------S-
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHC----C-CCeEEEEcCCHHHHHHHHHhcc-------------------c-
Confidence 3444444456789999999999999999883 2 2399999999988887765321 0
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+ +.+..++..+ ++..+++||+|+.... |..+.....++.+.+.|+|||++++.+
T Consensus 89 ---~~---~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 89 ---TG---ITYERADLDK-LHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp ---SS---EEEEECCGGG-CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CC---ceEEEcChhh-ccCCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence 11 7777777665 2322578999997654 333556788999999999999999865
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.8e-09 Score=110.43 Aligned_cols=121 Identities=20% Similarity=0.192 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 143 YGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 143 ~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
+...-..+.+..+.++|||+|||+|..++.+|+. + ..+|++||.++.+.+.+++ |+
T Consensus 527 ~r~~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~----g-a~~V~aVD~s~~al~~a~~-------------------N~ 582 (703)
T 3v97_A 527 HRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLG----G-ARSTTTVDMSRTYLEWAER-------------------NL 582 (703)
T ss_dssp GHHHHHHHHHHCTTCEEEEESCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHH-------------------HH
T ss_pred HHHHHHHHHHhcCCCcEEEeeechhHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHH-------------------HH
Confidence 3333344444557789999999999999998873 2 3579999999999988876 45
Q ss_pred hhhccC-CcccceEeeecchhhhhhhcCCcEeEEEEcCCC---------CCC---cHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 223 IYQNAI-DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH---------DFN---SAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 223 ~~~g~~-~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h---------~~~---~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
...++. ++ +++..+|+.+.++..+++||+|++|... ... .....++.+.++|+|||++++....
T Consensus 583 ~~ngl~~~~---v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 583 RLNGLTGRA---HRLIQADCLAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp HHTTCCSTT---EEEEESCHHHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHcCCCccc---eEEEecCHHHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 444554 34 8999999999887777899999999642 011 1223467888999999999987776
Q ss_pred C
Q 041517 290 T 290 (327)
Q Consensus 290 ~ 290 (327)
.
T Consensus 660 ~ 660 (703)
T 3v97_A 660 R 660 (703)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.2e-09 Score=95.82 Aligned_cols=111 Identities=14% Similarity=-0.055 Sum_probs=76.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCC------ChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRG------WPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~------~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
+..+|||||||+|..+..+++. .++..+|+++|+++. +.+.+++. +...+..
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~---~g~~~~v~gvD~s~~~~~~~~~~~~a~~~-------------------~~~~~~~ 100 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQ---VGSSGHVTGIDIASPDYGAPLTLGQAWNH-------------------LLAGPLG 100 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHH---HCTTCEEEEECSSCTTCCSSSCHHHHHHH-------------------HHTSTTG
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---hCCCCEEEEEECCccccccHHHHHHHHHH-------------------HHhcCCC
Confidence 4679999999999999999985 355689999999997 77777652 2222322
Q ss_pred CcccceEeeecc-hh-hhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 229 DSVLPVPFSSGS-AL-TKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 229 ~~v~~V~~~~gd-a~-~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++ +.+..++ .. ..++..+++||+|+..... ........++.+..+++|||++++.++..
T Consensus 101 ~~---v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~ 162 (275)
T 3bkx_A 101 DR---LTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM 162 (275)
T ss_dssp GG---EEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred Cc---eEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 23 7777776 21 1223335789999987543 22333445566666677799999988765
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.97 E-value=7.7e-10 Score=98.27 Aligned_cols=109 Identities=9% Similarity=-0.075 Sum_probs=78.8
Q ss_pred HHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.+..++... ++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++. ..
T Consensus 26 ~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~s~~~~~~a~~~-------------------~~ 80 (246)
T 1y8c_A 26 FIIEKCVENNLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENK-------------------FR 80 (246)
T ss_dssp HHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHH-------------------HH
T ss_pred HHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC------CCcEEEEECCHHHHHHHHHH-------------------Hh
Confidence 344444433 5689999999999999998874 56899999999988877652 22
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC-C-CCC---CcHHHHHHHHHccCCCCeEEEEE
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA-G-HDF---NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa-~-h~~---~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+. + +.+..++..+. + ..++||+|+... . +.. +.....++.+.++|+|||+++++
T Consensus 81 ~~~~--~---~~~~~~d~~~~-~-~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 81 SQGL--K---PRLACQDISNL-N-INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HTTC--C---CEEECCCGGGC-C-CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hcCC--C---eEEEecccccC-C-ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2221 2 67777776653 2 237899999965 2 222 34567889999999999999984
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=102.38 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=77.0
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..++.+++. .+.+++|+++|+++.+.+.+++ ++...+.. .
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~~~~a~~-------------------~~~~~g~~-~--- 127 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRV---VGEKGLVVSVEYSRKICEIAKR-------------------NVERLGIE-N--- 127 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH---HCTTCEEEEEESCHHHHHHHHH-------------------HHHHTTCC-S---
T ss_pred CCcCEEEEecCCchHHHHHHHHh---cCCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCC-C---
Confidence 34679999999999999999985 2335889999999998887766 33333332 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.+..+|..+.++. .++||+|+++.....-. +.+.+.|+|||++++..
T Consensus 128 v~~~~~d~~~~~~~-~~~fD~Iv~~~~~~~~~-----~~~~~~LkpgG~lvi~~ 175 (317)
T 1dl5_A 128 VIFVCGDGYYGVPE-FSPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVPI 175 (317)
T ss_dssp EEEEESCGGGCCGG-GCCEEEEEECSBBSCCC-----HHHHHHEEEEEEEEEEB
T ss_pred eEEEECChhhcccc-CCCeEEEEEcCCHHHHH-----HHHHHhcCCCcEEEEEE
Confidence 77888887764442 46899999997654333 57788999999999864
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-10 Score=98.60 Aligned_cols=122 Identities=9% Similarity=0.000 Sum_probs=86.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. +.+|+++|+++.+.+.+++. +
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~-------------------------------~ 83 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEE------GIESIGVDINEDMIKFCEGK-------------------------------F 83 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHH------TCCEEEECSCHHHHHHHHTT-------------------------------S
T ss_pred CCCeEEEEeCCCCHHHHHHHhC------CCcEEEEECCHHHHHHHHhh-------------------------------c
Confidence 3589999999999999999884 56899999998877665441 4
Q ss_pred Eeeecchhhhh-hhcCCcEeEEEEcCCCC-CC--cHHHHHHHHHccCCCCeEEEEEcCCCCCC-------------chhH
Q 041517 235 PFSSGSALTKL-CEWGVVGDLIEIDAGHD-FN--SAWADINRAWRILRPGGVIFGHDYFTAAD-------------NRGV 297 (327)
Q Consensus 235 ~~~~gda~~~L-~~l~~~fDLIfIDa~h~-~~--~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-------------~~GV 297 (327)
.+..++..+.+ +..+++||+|+...... .. .....++.+.+.|+|||++++........ ..--
T Consensus 84 ~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (240)
T 3dli_A 84 NVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVH 163 (240)
T ss_dssp EEECSCHHHHHHTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCC
T ss_pred ceeeccHHHHhhhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCC
Confidence 45566666644 22357899999865422 23 34688999999999999999887654110 0002
Q ss_pred HHHHHHHHHHcCCeEE
Q 041517 298 RRAVNLFAKINGLKVQ 313 (327)
Q Consensus 298 ~~Av~~f~~~~gl~v~ 313 (327)
.+.+..+++..|+++.
T Consensus 164 ~~~l~~~l~~aGf~~~ 179 (240)
T 3dli_A 164 PETLKFILEYLGFRDV 179 (240)
T ss_dssp HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHCCCeEE
Confidence 2556677778888754
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=98.44 Aligned_cols=100 Identities=12% Similarity=0.073 Sum_probs=77.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. + ..+++++|+++.+.+.+++... ..+ +
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~-----------------------~~~---~ 92 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEH----G-AKKVLGIDLSERMLTEAKRKTT-----------------------SPV---V 92 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHHCC-----------------------CTT---E
T ss_pred CCCEEEEECCCCCHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHhhc-----------------------cCC---e
Confidence 5789999999999999999984 2 2399999999988887765321 112 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..++..+ ++..+++||+|+.... +........++.+.++|+|||++++.
T Consensus 93 ~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 93 CYEQKAIED-IAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp EEEECCGGG-CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEcchhh-CCCCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 788888755 3433579999998654 22356678899999999999999986
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=99.86 Aligned_cols=124 Identities=15% Similarity=0.078 Sum_probs=87.7
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDS 230 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~ 230 (327)
...+..+|||+|||+|..++.+++. ++++.+|+++|.++.+.+.+++ |+... |. ++
T Consensus 107 ~~~~~~~VLD~G~G~G~~~~~la~~---~~~~~~v~~vD~s~~~~~~a~~-------------------~~~~~~g~-~~ 163 (275)
T 1yb2_A 107 GLRPGMDILEVGVGSGNMSSYILYA---LNGKGTLTVVERDEDNLKKAMD-------------------NLSEFYDI-GN 163 (275)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHH---HTTSSEEEEECSCHHHHHHHHH-------------------HHHTTSCC-TT
T ss_pred CCCCcCEEEEecCCCCHHHHHHHHH---cCCCCEEEEEECCHHHHHHHHH-------------------HHHhcCCC-Cc
Confidence 3345679999999999999999985 3567899999999988887766 33322 21 22
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
+.+..+|..+.++ +++||+|++|... ....++.+.+.|+|||++++.+... ....+.. ......|+
T Consensus 164 ---v~~~~~d~~~~~~--~~~fD~Vi~~~~~----~~~~l~~~~~~LkpgG~l~i~~~~~----~~~~~~~-~~l~~~Gf 229 (275)
T 1yb2_A 164 ---VRTSRSDIADFIS--DQMYDAVIADIPD----PWNHVQKIASMMKPGSVATFYLPNF----DQSEKTV-LSLSASGM 229 (275)
T ss_dssp ---EEEECSCTTTCCC--SCCEEEEEECCSC----GGGSHHHHHHTEEEEEEEEEEESSH----HHHHHHH-HHSGGGTE
T ss_pred ---EEEEECchhccCc--CCCccEEEEcCcC----HHHHHHHHHHHcCCCCEEEEEeCCH----HHHHHHH-HHHHHCCC
Confidence 7888888776332 3689999996542 3478899999999999999876543 2333333 33445665
Q ss_pred eE
Q 041517 311 KV 312 (327)
Q Consensus 311 ~v 312 (327)
.+
T Consensus 230 ~~ 231 (275)
T 1yb2_A 230 HH 231 (275)
T ss_dssp EE
T ss_pred eE
Confidence 53
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.96 E-value=9e-10 Score=95.91 Aligned_cols=116 Identities=14% Similarity=0.039 Sum_probs=79.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..+....++.+|||||||+|..++.++.. .+.+++++|+++.+.+.+++.. ..
T Consensus 13 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~-----~~~~v~~vD~s~~~~~~a~~~~-------------------~~ 68 (209)
T 2p8j_A 13 RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVE-----DGYKTYGIEISDLQLKKAENFS-------------------RE 68 (209)
T ss_dssp HHHHHHHHSSSCSEEEEESCCSSSCTHHHHHH-----TTCEEEEEECCHHHHHHHHHHH-------------------HH
T ss_pred HHHHHHhccCCCCEEEEECCCCCHHHHHHHHh-----CCCEEEEEECCHHHHHHHHHHH-------------------Hh
Confidence 45555544455789999999999975444432 2679999999999988776532 11
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+. + +.+..++..+ ++..+++||+|+.... +.. ......++.+.+.|+|||++++.++..
T Consensus 69 ~~~--~---~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 131 (209)
T 2p8j_A 69 NNF--K---LNISKGDIRK-LPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT 131 (209)
T ss_dssp HTC--C---CCEEECCTTS-CCSCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred cCC--c---eEEEECchhh-CCCCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 121 2 6666776654 2333478999998643 212 345677899999999999999988754
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=101.57 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=98.8
Q ss_pred HHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 150 LIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 150 L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
+++..+ ..+|||+|||+|..++.+|.. + ..+|+++|.++...+.+++ |+...++.
T Consensus 119 i~~~~~~g~~VlD~~aG~G~~~i~~a~~----g-~~~V~avD~np~a~~~~~~-------------------N~~~N~v~ 174 (278)
T 3k6r_A 119 MAKVAKPDELVVDMFAGIGHLSLPIAVY----G-KAKVIAIEKDPYTFKFLVE-------------------NIHLNKVE 174 (278)
T ss_dssp HHHHCCTTCEEEETTCTTTTTTHHHHHH----T-CCEEEEECCCHHHHHHHHH-------------------HHHHTTCT
T ss_pred HHHhcCCCCEEEEecCcCcHHHHHHHHh----c-CCeEEEEECCHHHHHHHHH-------------------HHHHcCCC
Confidence 334444 678999999999999999974 2 4689999999988877765 66666777
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC-chhHHHHHHHHHHH
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD-NRGVRRAVNLFAKI 307 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-~~GV~~Av~~f~~~ 307 (327)
++ +.+..+|+.+... .+.||.|++|--+.. ...++.++++|++||+|.+++...... .....+.++..+..
T Consensus 175 ~~---v~~~~~D~~~~~~--~~~~D~Vi~~~p~~~---~~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~ 246 (278)
T 3k6r_A 175 DR---MSAYNMDNRDFPG--ENIADRILMGYVVRT---HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKE 246 (278)
T ss_dssp TT---EEEECSCTTTCCC--CSCEEEEEECCCSSG---GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH
T ss_pred Cc---EEEEeCcHHHhcc--ccCCCEEEECCCCcH---HHHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHH
Confidence 76 8888999887543 368999999865432 357788999999999998887654211 12345667778888
Q ss_pred cCCeEEE
Q 041517 308 NGLKVQI 314 (327)
Q Consensus 308 ~gl~v~~ 314 (327)
.|.++..
T Consensus 247 ~g~~v~~ 253 (278)
T 3k6r_A 247 YGYDVEK 253 (278)
T ss_dssp TTCEEEE
T ss_pred cCCcEEE
Confidence 8887654
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=102.11 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=76.3
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|..++.+++. + ..+|+++|.++ +.+.+++ ++...++.++
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~----g-~~~v~gvD~s~-~~~~a~~-------------------~~~~~~~~~~- 114 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKA----G-AKKVLGVDQSE-ILYQAMD-------------------IIRLNKLEDT- 114 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT----T-CSEEEEEESST-HHHHHHH-------------------HHHHTTCTTT-
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHc----C-CCEEEEEChHH-HHHHHHH-------------------HHHHcCCCCc-
Confidence 3456789999999999999999883 2 46999999996 8777765 3333344344
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcC---CCCCC-cHHHHHHHHHccCCCCeEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDA---GHDFN-SAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa---~h~~~-~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.+..++..+. +..+++||+|+.+. ...+. .....++.+.+.|+|||+++.
T Consensus 115 --i~~~~~d~~~~-~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip 169 (340)
T 2fyt_A 115 --ITLIKGKIEEV-HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169 (340)
T ss_dssp --EEEEESCTTTS-CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred --EEEEEeeHHHh-cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence 88888887663 22237899999876 22222 334578888999999999983
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=97.20 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=74.7
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|+.+..+++. .+ .+|+++|.++.+.+.+++ ++...+.. .
T Consensus 88 ~~~~~~~vLdiG~G~G~~~~~la~~---~~--~~v~~vD~~~~~~~~a~~-------------------~~~~~~~~-~- 141 (235)
T 1jg1_A 88 NLKPGMNILEVGTGSGWNAALISEI---VK--TDVYTIERIPELVEFAKR-------------------NLERAGVK-N- 141 (235)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHH---HC--SCEEEEESCHHHHHHHHH-------------------HHHHTTCC-S-
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHH---hC--CEEEEEeCCHHHHHHHHH-------------------HHHHcCCC-C-
Confidence 3345679999999999999999985 22 799999999988887765 33333321 1
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.+..++....++. ..+||+|+++.....-. +.+.+.|+|||++++.-.
T Consensus 142 --v~~~~~d~~~~~~~-~~~fD~Ii~~~~~~~~~-----~~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 142 --VHVILGDGSKGFPP-KAPYDVIIVTAGAPKIP-----EPLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp --EEEEESCGGGCCGG-GCCEEEEEECSBBSSCC-----HHHHHTEEEEEEEEEEEC
T ss_pred --cEEEECCcccCCCC-CCCccEEEECCcHHHHH-----HHHHHhcCCCcEEEEEEe
Confidence 77778876443332 34699999987654333 478899999999888544
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=94.66 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=79.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc-ccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS-VLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~-v~~ 233 (327)
+..+|||||||+|..+..+++. +.+++++|+++.+.+.+++... ..+.... ...
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~~-------------------~~~~~~~~~~~ 84 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK------GYSVTGIDINSEAIRLAETAAR-------------------SPGLNQKTGGK 84 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTT-------------------CCSCCSSSSCE
T ss_pred CCCeEEEECCCCCHHHHHHHhC------CCeEEEEECCHHHHHHHHHHHH-------------------hcCCccccCcc
Confidence 4679999999999999999984 6799999999998887766432 1111000 012
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHH---HHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAW---ADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~---~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ ++..+++||+|+...... ..... ..++.+.++|+|||++++.++..
T Consensus 85 ~~~~~~d~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 85 AEFKVENASS-LSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp EEEEECCTTS-CCSCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eEEEEecccc-cCCCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 6777777654 233357899999875432 22333 68999999999999999987754
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-09 Score=101.70 Aligned_cols=131 Identities=11% Similarity=-0.033 Sum_probs=90.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+| |+|..++.++.. ++..+|+++|+++.+.+.+++ |+...|+. + |
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~----~~~~~v~~vDi~~~~l~~a~~-------------------~~~~~g~~-~---v 223 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLS----GLPKRIAVLDIDERLTKFIEK-------------------AANEIGYE-D---I 223 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHH----TCCSEEEEECSCHHHHHHHHH-------------------HHHHHTCC-C---E
T ss_pred CCCEEEEEC-CCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHH-------------------HHHHcCCC-C---E
Confidence 468999999 999999999874 456899999999999998877 44444443 3 8
Q ss_pred Eeeecchhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCe-EEEEEcCCCCCCchhHHHHHHHHHH-HcCCe
Q 041517 235 PFSSGSALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGG-VIFGHDYFTAADNRGVRRAVNLFAK-INGLK 311 (327)
Q Consensus 235 ~~~~gda~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGG-vIi~dD~~~~~~~~GV~~Av~~f~~-~~gl~ 311 (327)
.+..+|..+.++. .++.||+|++|.-.........++.+.+.|+||| ++++.-... +..+.....+..+.. ..|+.
T Consensus 224 ~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~~ 302 (373)
T 2qm3_A 224 EIFTFDLRKPLPDYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITRR-ESSLDKWREIQKLLLNEFNVV 302 (373)
T ss_dssp EEECCCTTSCCCTTTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECTT-TCCHHHHHHHHHHHHHTSCCE
T ss_pred EEEEChhhhhchhhccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEecC-cCCHHHHHHHHHHHHHhcCcc
Confidence 8889988775553 4568999999853211223567889999999999 434443321 112222245566666 67776
Q ss_pred EEE
Q 041517 312 VQI 314 (327)
Q Consensus 312 v~~ 314 (327)
+..
T Consensus 303 ~~~ 305 (373)
T 2qm3_A 303 ITD 305 (373)
T ss_dssp EEE
T ss_pred hhh
Confidence 543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=91.28 Aligned_cols=132 Identities=14% Similarity=0.012 Sum_probs=89.2
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
..++..++ .++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++...
T Consensus 37 ~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~~~~~~~~a~~~~~------------------- 89 (195)
T 3cgg_A 37 ARLIDAMA--PRGAKILDAGCGQGRIGGYLSKQ------GHDVLGTDLDPILIDYAKQDFP------------------- 89 (195)
T ss_dssp HHHHHHHS--CTTCEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHHHCT-------------------
T ss_pred HHHHHHhc--cCCCeEEEECCCCCHHHHHHHHC------CCcEEEEcCCHHHHHHHHHhCC-------------------
Confidence 34555553 25679999999999999999984 5799999999888776655211
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC---CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHH
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF---NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRR 299 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~ 299 (327)
. +.+..++..+. +..+++||+|+..+. ..+ +.....++.+.+.|+|||++++....... . -..
T Consensus 90 ------~---~~~~~~d~~~~-~~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~--~-~~~ 156 (195)
T 3cgg_A 90 ------E---ARWVVGDLSVD-QISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRG--W-VFG 156 (195)
T ss_dssp ------T---SEEEECCTTTS-CCCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSS--C-CHH
T ss_pred ------C---CcEEEcccccC-CCCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCC--c-CHH
Confidence 1 55566665542 222468999999732 222 23357789999999999999986554311 1 134
Q ss_pred HHHHHHHHcCCeEEEc
Q 041517 300 AVNLFAKINGLKVQID 315 (327)
Q Consensus 300 Av~~f~~~~gl~v~~~ 315 (327)
.+..+++..|+++...
T Consensus 157 ~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 157 DFLEVAERVGLELENA 172 (195)
T ss_dssp HHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHcCCEEeee
Confidence 4555666778876643
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.3e-09 Score=86.84 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=71.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..+..+++. ++++.+++++|.++ +.+.. + +
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~---~~~~~~v~~~D~~~-~~~~~---------------------~------------~ 64 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQ---IGGKGRIIACDLLP-MDPIV---------------------G------------V 64 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHH---HCTTCEEEEEESSC-CCCCT---------------------T------------E
T ss_pred CCCeEEEeCCCCCHHHHHHHHH---hCCCCeEEEEECcc-ccccC---------------------c------------E
Confidence 4679999999999999999985 45678999999998 65320 1 4
Q ss_pred Eeeecchhhh-----hh--hcCCcEeEEEEcCCCCC-CcH-----------HHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTK-----LC--EWGVVGDLIEIDAGHDF-NSA-----------WADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~-----L~--~l~~~fDLIfIDa~h~~-~~v-----------~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. ++ ..+.+||+|+.+..... ... ...++.+.++|+|||++++..+..
T Consensus 65 ~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 65 DFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp EEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred EEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 4445554332 11 11368999999865322 111 467899999999999999877654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=99.41 Aligned_cols=111 Identities=12% Similarity=0.052 Sum_probs=77.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.||+. .++..+++||+++.+.+.|++... . +......+. . .|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~----~p~~~v~GiDis~~~l~~A~~~~~------------~-l~~~~~~~~-~---nv 104 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPL----FPDTLILGLEIRVKVSDYVQDRIR------------A-LRAAPAGGF-Q---NI 104 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGG----STTSEEEEEESCHHHHHHHHHHHH------------H-HHHSTTCCC-T---TE
T ss_pred CCCeEEEEccCCcHHHHHHHHH----CCCCeEEEEECCHHHHHHHHHHHH------------H-HHHHHhcCC-C---eE
Confidence 4568999999999999999974 457899999999999988866321 0 000001111 1 28
Q ss_pred Eeeecchhhhhhh--cCCcEeEEEEcCCCCCCc---------HHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCE--WGVVGDLIEIDAGHDFNS---------AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~--l~~~fDLIfIDa~h~~~~---------v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..+++.+.++. .++.||.|++...-.+.. ....++.+.++|+|||++++.
T Consensus 105 ~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~ 167 (235)
T 3ckk_A 105 ACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI 167 (235)
T ss_dssp EEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence 8889998775553 257899999853211110 125789999999999998874
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-09 Score=102.92 Aligned_cols=108 Identities=17% Similarity=0.068 Sum_probs=79.9
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.++|||||||+|..++.+++. ...+|++||.+ .+.+.|++ ++...+..++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-----g~~~v~gvD~s-~~l~~a~~-------------------~~~~~~~~~~-- 116 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-----GARKVIGIECS-SISDYAVK-------------------IVKANKLDHV-- 116 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-----TCSEEEEEECS-THHHHHHH-------------------HHHHTTCTTT--
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-----CCCEEEEECcH-HHHHHHHH-------------------HHHHcCCCCc--
Confidence 456789999999999999999984 25699999999 48877766 3334455555
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCC----CCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAG----HDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~----h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
|.+..++..+. +..+++||+|+.+.. +........++.+.++|+|||+++.+...
T Consensus 117 -v~~~~~d~~~~-~~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~ 175 (349)
T 3q7e_A 117 -VTIIKGKVEEV-ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRAT 175 (349)
T ss_dssp -EEEEESCTTTC-CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred -EEEEECcHHHc-cCCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccce
Confidence 88888887764 222479999998752 22234456678888999999999865543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.1e-10 Score=93.10 Aligned_cols=106 Identities=21% Similarity=0.131 Sum_probs=79.1
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+ ...+..+|||||||+|..+..+++. ..+++++|+++.+.+.+++.
T Consensus 9 ~~~~~-~~~~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~----------------------- 58 (170)
T 3i9f_A 9 YLPNI-FEGKKGVIVDYGCGNGFYCKYLLEF------ATKLYCIDINVIALKEVKEK----------------------- 58 (170)
T ss_dssp THHHH-HSSCCEEEEEETCTTCTTHHHHHTT------EEEEEEECSCHHHHHHHHHH-----------------------
T ss_pred HHHhc-CcCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEeCCHHHHHHHHHh-----------------------
Confidence 34443 3345679999999999999999984 24999999998877766542
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+ +.+..++ ++..+++||+|+.... +..+.....++.+.+.|+|||++++.++..
T Consensus 59 --~~~---v~~~~~d----~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 59 --FDS---VITLSDP----KEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp --CTT---SEEESSG----GGSCTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred --CCC---cEEEeCC----CCCCCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 011 6677776 3333578999997654 334566788999999999999999998865
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.94 E-value=9.6e-09 Score=101.03 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=95.4
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
..++..++...+..+|||+|||.|..+..+++. . ++++|+++|+++.+.+.+++ |+.
T Consensus 235 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~---~-~~~~v~a~D~~~~~l~~~~~-------------------~~~ 291 (429)
T 1sqg_A 235 AQGCMTWLAPQNGEHILDLCAAPGGKTTHILEV---A-PEAQVVAVDIDEQRLSRVYD-------------------NLK 291 (429)
T ss_dssp HHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHH---C-TTCEEEEEESSTTTHHHHHH-------------------HHH
T ss_pred HHHHHHHcCCCCcCeEEEECCCchHHHHHHHHH---c-CCCEEEEECCCHHHHHHHHH-------------------HHH
Confidence 344555555545679999999999999999985 2 35899999999999887765 444
Q ss_pred hhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCC-------CcH----------------HHHHHHHHccCCC
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDF-------NSA----------------WADINRAWRILRP 279 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~-------~~v----------------~~dl~~~~~lL~p 279 (327)
..|.. +.+..+|+.+....+ ++.||+|++|+.... +.. ...++.+.++|+|
T Consensus 292 ~~g~~-----~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp 366 (429)
T 1sqg_A 292 RLGMK-----ATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT 366 (429)
T ss_dssp HTTCC-----CEEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE
T ss_pred HcCCC-----eEEEeCchhhchhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33431 566777776543223 368999999964321 111 3568899999999
Q ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHc-CCeEE
Q 041517 280 GGVIFGHDYFTAADNRGVRRAVNLFAKIN-GLKVQ 313 (327)
Q Consensus 280 GGvIi~dD~~~~~~~~GV~~Av~~f~~~~-gl~v~ 313 (327)
||++++.++...+. .-.+.+..|.+.+ ++++.
T Consensus 367 GG~lvystcs~~~~--ene~~v~~~l~~~~~~~~~ 399 (429)
T 1sqg_A 367 GGTLVYATCSVLPE--ENSLQIKAFLQRTADAELC 399 (429)
T ss_dssp EEEEEEEESCCCGG--GTHHHHHHHHHHCTTCEEC
T ss_pred CCEEEEEECCCChh--hHHHHHHHHHHhCCCCEEe
Confidence 99999998876331 1123455555544 45543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.8e-10 Score=101.58 Aligned_cols=114 Identities=13% Similarity=-0.020 Sum_probs=81.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. +.+|+++|+++.+.+.+++.. .+ +
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~~-------------------------~~---~ 93 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ------AARWAAYDFSPELLKLARANA-------------------------PH---A 93 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHHC-------------------------TT---S
T ss_pred CCCeEEEeCCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHhC-------------------------CC---c
Confidence 4689999999999999999874 679999999999888776521 11 6
Q ss_pred Eeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEE
Q 041517 235 PFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 235 ~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~ 313 (327)
.+..++..+.++.. +++||+|+...+ ....++.+.+.|+|||+++...... . .+.+...+...|+++.
T Consensus 94 ~~~~~d~~~~~~~~~~~~fD~v~~~~~-----~~~~l~~~~~~LkpgG~l~~~~~~~--~----~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 94 DVYEWNGKGELPAGLGAPFGLIVSRRG-----PTSVILRLPELAAPDAHFLYVGPRL--N----VPEVPERLAAVGWDIV 162 (226)
T ss_dssp EEEECCSCSSCCTTCCCCEEEEEEESC-----CSGGGGGHHHHEEEEEEEEEEESSS--C----CTHHHHHHHHTTCEEE
T ss_pred eEEEcchhhccCCcCCCCEEEEEeCCC-----HHHHHHHHHHHcCCCcEEEEeCCcC--C----HHHHHHHHHHCCCeEE
Confidence 77777775555543 579999998732 2257789999999999999332221 1 1334555566676643
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=96.00 Aligned_cols=102 Identities=19% Similarity=0.074 Sum_probs=73.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .+ .++|+++|+++.+.+.++++.. .. .+ +
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~---~~-~~~v~gvD~s~~~~~~a~~~~~-------------------~~---~~---v 124 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADI---AD-KGIVYAIEYAPRIMRELLDACA-------------------ER---EN---I 124 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHH---TT-TSEEEEEESCHHHHHHHHHHTT-------------------TC---TT---E
T ss_pred CCCEEEEEcccCCHHHHHHHHH---cC-CcEEEEEECCHHHHHHHHHHhh-------------------cC---CC---e
Confidence 3578999999999999999985 34 6899999999988877665321 11 12 6
Q ss_pred Eeeecchhhhhh--hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLC--EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~--~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..+++.+... ...+.||+|+.|.... ......++.+.+.|+|||++++-
T Consensus 125 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 125 IPILGDANKPQEYANIVEKVDVIYEDVAQP-NQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp EEEECCTTCGGGGTTTSCCEEEEEECCCST-THHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEECCCCCcccccccCccEEEEEEecCCh-hHHHHHHHHHHHhCCCCcEEEEE
Confidence 777777655211 1136899999764321 11245689999999999998884
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=95.72 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=78.8
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+...+..+|||+|||+|..++.+++. ..+++++|.++.+.+.+++ |....+...+
T Consensus 87 ~~~~~~~~vldiG~G~G~~~~~l~~~------~~~v~~vD~~~~~~~~a~~-------------------~~~~~~~~~~ 141 (248)
T 2yvl_A 87 LNLNKEKRVLEFGTGSGALLAVLSEV------AGEVWTFEAVEEFYKTAQK-------------------NLKKFNLGKN 141 (248)
T ss_dssp TTCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHH-------------------HHHHTTCCTT
T ss_pred cCCCCCCEEEEeCCCccHHHHHHHHh------CCEEEEEecCHHHHHHHHH-------------------HHHHcCCCCc
Confidence 33345679999999999999999984 6899999999998887766 3332333233
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+..++..+.+. .+..||+|+.|... ....++.+.+.|+|||++++....
T Consensus 142 ---~~~~~~d~~~~~~-~~~~~D~v~~~~~~----~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 142 ---VKFFNVDFKDAEV-PEGIFHAAFVDVRE----PWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp ---EEEECSCTTTSCC-CTTCBSEEEECSSC----GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ---EEEEEcChhhccc-CCCcccEEEECCcC----HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 7777787766431 13679999997542 346789999999999999886553
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-09 Score=99.68 Aligned_cols=107 Identities=17% Similarity=0.072 Sum_probs=78.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. + ..+++++|+++.+.+.+++. ....+...+ +
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~~~---v 116 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERA----G-IGEYYGVDIAEVSINDARVR-------------------ARNMKRRFK---V 116 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH----T-CSEEEEEESCHHHHHHHHHH-------------------HHTSCCSSE---E
T ss_pred CCCeEEEECCCCCHHHHHHHHC----C-CCEEEEEECCHHHHHHHHHH-------------------HHhcCCCcc---E
Confidence 5689999999999999988874 2 45999999999988877652 222232223 7
Q ss_pred Eeeecchhhhhhh-cCCcEeEEEEcCCCCC-----CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCE-WGVVGDLIEIDAGHDF-----NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~-l~~~fDLIfIDa~h~~-----~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..++..+. +. .+++||+|+......+ ......++.+.++|+|||++++....
T Consensus 117 ~~~~~d~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 117 FFRAQDSYGR-HMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp EEEESCTTTS-CCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EEEECCcccc-ccCCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 7788876653 22 2578999998754322 33456789999999999999987644
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=104.54 Aligned_cols=113 Identities=22% Similarity=0.231 Sum_probs=83.0
Q ss_pred HHHHHHHHhhc-----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 144 GAVFGNLIDKV-----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 144 g~lL~~L~~~~-----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
..++..+.+.. +..+|||+|||+|..++.+++. +.+|++||+++.+.+.+++
T Consensus 217 ~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~------g~~V~gvDis~~al~~A~~----------------- 273 (381)
T 3dmg_A 217 LLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM------GAEVVGVEDDLASVLSLQK----------------- 273 (381)
T ss_dssp HHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT------TCEEEEEESBHHHHHHHHH-----------------
T ss_pred HHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc------CCEEEEEECCHHHHHHHHH-----------------
Confidence 34556665443 4679999999999999999984 5799999999998888776
Q ss_pred HHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC------CCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD------FNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~------~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
|+...+. .+++..+|..+.... +++||+|+.+.... .......++.+.++|+|||++++.-
T Consensus 274 --n~~~~~~-----~v~~~~~D~~~~~~~-~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 274 --GLEANAL-----KAQALHSDVDEALTE-EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp --HHHHTTC-----CCEEEECSTTTTSCT-TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --HHHHcCC-----CeEEEEcchhhcccc-CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 3333332 167778887764332 47899999984321 2344567899999999999888753
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-09 Score=96.98 Aligned_cols=101 Identities=16% Similarity=0.093 Sum_probs=76.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++. + .+...+ +
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~~-------------------~--~~~~~~---~ 88 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR------GYRYIALDADAAMLEVFRQK-------------------I--AGVDRK---V 88 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT------TCEEEEEESCHHHHHHHHHH-------------------T--TTSCTT---E
T ss_pred CCCEEEEeCCcCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHH-------------------h--hccCCc---e
Confidence 4679999999999999999873 57999999999988877652 1 011112 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..++..+ ++..+++||+|+.... |..+.....++++.+.|+|||++++.
T Consensus 89 ~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 89 QVVQADARA-IPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp EEEESCTTS-CCSCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEccccc-CCCCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 777887754 3333578999998644 33345668899999999999998886
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=98.92 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=76.1
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++.+|||||||+|..+..+++ ++.+|+++|+++.+.+.+++. . .
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~------~~~~v~gvD~s~~~~~~a~~~-------------------~----------~ 77 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALAN------QGLFVYAVEPSIVMRQQAVVH-------------------P----------Q 77 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHT------TTCEEEEECSCHHHHHSSCCC-------------------T----------T
T ss_pred CCCCEEEEEcCcccHHHHHHHh------CCCEEEEEeCCHHHHHHHHhc-------------------c----------C
Confidence 3578999999999999999986 378999999999877655431 0 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+..++..+ ++..+++||+|+.... |........++++.+.|+ ||.+++.++.
T Consensus 78 ~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 78 VEWFTGYAEN-LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp EEEECCCTTS-CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CEEEECchhh-CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 7777777755 3433579999998753 334666788999999999 9977776665
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=90.20 Aligned_cols=137 Identities=11% Similarity=0.004 Sum_probs=86.6
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+..+|||||||+|..+..+++. .++.+|++||+++.|.+.+.+... ++....+..
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~----~p~~~v~gvD~s~~~l~~~~~~a~---------------~~~~~~~~~---- 81 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQ----NPSRLVVALDADKSRMEKISAKAA---------------AKPAKGGLP---- 81 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHH----CTTEEEEEEESCGGGGHHHHHHHT---------------SCGGGTCCT----
T ss_pred ccCCCEEEEecCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHH---------------HhhhhcCCC----
Confidence 335679999999999999999984 458999999999998874221110 011111221
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCC------CCcHHHHHHHHHccCCCCeEEEEEcCC--CCCCc----------
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHD------FNSAWADINRAWRILRPGGVIFGHDYF--TAADN---------- 294 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~------~~~v~~dl~~~~~lL~pGGvIi~dD~~--~~~~~---------- 294 (327)
.+.+..++..+ ++..... |.|++.-... .......++++.+.|+|||++++.... |.+..
T Consensus 82 ~v~~~~~d~~~-l~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (218)
T 3mq2_A 82 NLLYLWATAER-LPPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPT 159 (218)
T ss_dssp TEEEEECCSTT-CCSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCC
T ss_pred ceEEEecchhh-CCCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccc
Confidence 27888888776 4443445 7777543210 011146789999999999999884211 10100
Q ss_pred -hhHHHHHHHHHHHcCCeEEE
Q 041517 295 -RGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 295 -~GV~~Av~~f~~~~gl~v~~ 314 (327)
.-..+.+.......|+++..
T Consensus 160 ~~~~~~~l~~~l~~aGf~i~~ 180 (218)
T 3mq2_A 160 PDSADEWLAPRYAEAGWKLAD 180 (218)
T ss_dssp HHHHHHHHHHHHHHTTEEEEE
T ss_pred hHHHHHHHHHHHHHcCCCcee
Confidence 11344466677888887653
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.4e-09 Score=98.95 Aligned_cols=111 Identities=9% Similarity=0.064 Sum_probs=81.5
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.++++|||||||+|..+..+++. .++.+++++|. +.+.+.+++. +...+..++
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-------------------~~~~~~~~~--- 230 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQY----NKEVEVTIVDL-PQQLEMMRKQ-------------------TAGLSGSER--- 230 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHH----STTCEEEEEEC-HHHHHHHHHH-------------------HTTCTTGGG---
T ss_pred cCCCEEEEeCCCcCHHHHHHHHh----CCCCEEEEEeC-HHHHHHHHHH-------------------HHhcCcccc---
Confidence 46789999999999999999985 35789999999 8887777653 333333334
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcC-CCCCCc--HHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDA-GHDFNS--AWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
|++..+|..+.-..+++.||+|++-. -|.+.+ ....++.+.+.|+|||.|++.|..+.
T Consensus 231 v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 231 IHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp EEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred eEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 88888886652001236799999753 454433 34668999999999999998887763
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.90 E-value=6.7e-09 Score=99.37 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=76.8
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+..+|||||||+|..++.+++. + ..+|++||.++ +.+.+++ ++...++.++
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~----g-~~~V~~vD~s~-~~~~a~~-------------------~~~~~~l~~~-- 100 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQA----G-ARKIYAVEAST-MAQHAEV-------------------LVKSNNLTDR-- 100 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHT----T-CSEEEEEECST-HHHHHHH-------------------HHHHTTCTTT--
T ss_pred cCCcCEEEEcCCCccHHHHHHHhC----C-CCEEEEECCHH-HHHHHHH-------------------HHHHcCCCCc--
Confidence 346789999999999999998873 2 46999999995 7666654 3333344444
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCC--C-CCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAG--H-DFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~--h-~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+..++..+. .+.++||+|+.+.. | ..+.....+..+.++|+|||++++.
T Consensus 101 -v~~~~~d~~~~--~~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 101 -IVVIPGKVEEV--SLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp -EEEEESCTTTC--CCSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred -EEEEEcchhhC--CCCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 88888887663 23468999999853 2 2345667888889999999999854
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=96.55 Aligned_cols=100 Identities=12% Similarity=0.034 Sum_probs=74.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. ..+++++|+++.+.+.+++... + +
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~-------------------------~---~ 85 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKE------FGDTAGLELSEDMLTHARKRLP-------------------------D---A 85 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHH------HSEEEEEESCHHHHHHHHHHCT-------------------------T---C
T ss_pred CCCeEEEecccCCHHHHHHHHh------CCcEEEEeCCHHHHHHHHHhCC-------------------------C---C
Confidence 4689999999999999999985 2489999999988877655210 1 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC--CCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA--GHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa--~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+. +. +++||+|+.-. -+.. ......++.+.+.|+|||+++++++..
T Consensus 86 ~~~~~d~~~~-~~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 86 TLHQGDMRDF-RL-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp EEEECCTTTC-CC-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred EEEECCHHHc-cc-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 6667766552 22 57899999432 2211 344677899999999999999987654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.89 E-value=5.6e-09 Score=99.12 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=76.4
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|..++.+++. + ..+|+++|.+ .+.+.+++ ++...++.++
T Consensus 35 ~~~~~~~VLDiGcGtG~ls~~la~~----g-~~~v~~vD~s-~~~~~a~~-------------------~~~~~~~~~~- 88 (328)
T 1g6q_1 35 DLFKDKIVLDVGCGTGILSMFAAKH----G-AKHVIGVDMS-SIIEMAKE-------------------LVELNGFSDK- 88 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHT----C-CSEEEEEESS-THHHHHHH-------------------HHHHTTCTTT-
T ss_pred hhcCCCEEEEecCccHHHHHHHHHC----C-CCEEEEEChH-HHHHHHHH-------------------HHHHcCCCCC-
Confidence 4456789999999999999998873 2 4699999999 57777665 3333444445
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCC---CCC-CcHHHHHHHHHccCCCCeEEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAG---HDF-NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~---h~~-~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
|.+..++..+. +...++||+|+.+.. ..+ ......+..+.++|+|||+++.+
T Consensus 89 --i~~~~~d~~~~-~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~ 144 (328)
T 1g6q_1 89 --ITLLRGKLEDV-HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD 144 (328)
T ss_dssp --EEEEESCTTTS-CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred --EEEEECchhhc-cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 78888887663 221378999998742 112 23446678888999999999844
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=100.63 Aligned_cols=106 Identities=11% Similarity=0.068 Sum_probs=78.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc--CCccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA--IDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~--~~~v~ 232 (327)
++++|||||||+|..+..+++. +.+|+++|+++.+.+.+++.. ...+. ..+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~------~~~v~gvD~s~~~~~~a~~~~-------------------~~~~~~~~~~-- 134 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDL------GWEVTALELSTSVLAAFRKRL-------------------AEAPADVRDR-- 134 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTT------TCCEEEEESCHHHHHHHHHHH-------------------HTSCHHHHTT--
T ss_pred CCCcEEEEeccCCHHHHHHHHc------CCeEEEEECCHHHHHHHHHHH-------------------hhcccccccc--
Confidence 3569999999999999999974 578999999999988877632 11110 022
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcC--CCCCC--cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDA--GHDFN--SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa--~h~~~--~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+ ++. +++||+|++.. -|-.. .....++.+.+.|+|||++++..+..
T Consensus 135 -v~~~~~d~~~-~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 193 (299)
T 3g2m_A 135 -CTLVQGDMSA-FAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS 193 (299)
T ss_dssp -EEEEECBTTB-CCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred -eEEEeCchhc-CCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence 8888888776 232 68999998642 22222 24678899999999999999988765
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-09 Score=95.95 Aligned_cols=128 Identities=13% Similarity=0.005 Sum_probs=90.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. + ..+++++|+++.+.+.+++... .. .+ +
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~----~-~~~v~~vD~s~~~~~~a~~~~~-------------------~~---~~---~ 142 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTK----L-YATTDLLEPVKHMLEEAKRELA-------------------GM---PV---G 142 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHH----H-CSEEEEEESCHHHHHHHHHHTT-------------------TS---SE---E
T ss_pred CCCEEEEECCCcCHHHHHHHHh----h-cCEEEEEeCCHHHHHHHHHHhc-------------------cC---Cc---e
Confidence 4689999999999999999885 2 5689999999998887766321 10 12 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCCCC----------CchhHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFTAA----------DNRGVRRAV 301 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~~~----------~~~GV~~Av 301 (327)
.+..++..+ ++..+++||+|+......+ ......++.+.+.|+|||++++.+..... ...--.+.+
T Consensus 143 ~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T 1xtp_A 143 KFILASMET-ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp EEEESCGGG-CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred EEEEccHHH-CCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHH
Confidence 777777655 3333478999998654322 23567899999999999999988753210 000123566
Q ss_pred HHHHHHcCCeEE
Q 041517 302 NLFAKINGLKVQ 313 (327)
Q Consensus 302 ~~f~~~~gl~v~ 313 (327)
..+++..|+++.
T Consensus 222 ~~~l~~aGf~~~ 233 (254)
T 1xtp_A 222 KRLFNESGVRVV 233 (254)
T ss_dssp HHHHHHHTCCEE
T ss_pred HHHHHHCCCEEE
Confidence 777778888765
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-09 Score=96.11 Aligned_cols=100 Identities=17% Similarity=-0.001 Sum_probs=77.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++.. ++.+++++|+++.+.+.+++.. .+ +
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~~----~~~~v~~~D~s~~~~~~a~~~~-------------------------~~---~ 80 (259)
T 2p35_A 33 RVLNGYDLGCGPGNSTELLTDRY----GVNVITGIDSDDDMLEKAADRL-------------------------PN---T 80 (259)
T ss_dssp CCSSEEEETCTTTHHHHHHHHHH----CTTSEEEEESCHHHHHHHHHHS-------------------------TT---S
T ss_pred CCCEEEEecCcCCHHHHHHHHhC----CCCEEEEEECCHHHHHHHHHhC-------------------------CC---c
Confidence 46799999999999999999852 4789999999998887765421 11 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.+..++..+. + .+.+||+|+.... |..+.....++.+.+.|+|||++++...
T Consensus 81 ~~~~~d~~~~-~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 81 NFGKADLATW-K-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EEEECCTTTC-C-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EEEECChhhc-C-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 6777776653 3 4578999998654 3334567889999999999999998764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=96.47 Aligned_cols=103 Identities=15% Similarity=-0.016 Sum_probs=70.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCC-CCChhhh---hhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDF-RGWPGFR---DKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~-~~~~~~A---~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+..+|||||||+|..++.+|+. .++.+|++||++ +.|.+.| ++. +...+..
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~----~~~~~v~GvD~s~~~ml~~A~~A~~~-------------------~~~~~~~-- 78 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAIN----DQNTFYIGIDPVKENLFDISKKIIKK-------------------PSKGGLS-- 78 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHT----CTTEEEEEECSCCGGGHHHHHHHTSC-------------------GGGTCCS--
T ss_pred CCCEEEEEeccCcHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHH-------------------HHHcCCC--
Confidence 4678999999999999999973 458899999999 5665554 442 2222221
Q ss_pred ccceEeeecchhhhhhh-cCCcEeEEEEcCCCCC------CcHHHHHHHHHccCCCCeEEEE
Q 041517 231 VLPVPFSSGSALTKLCE-WGVVGDLIEIDAGHDF------NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~-l~~~fDLIfIDa~h~~------~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.+.+..+++.+. +. ....+|.|++.-.... ......++++.++|||||++++
T Consensus 79 --~v~~~~~d~~~l-~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 79 --NVVFVIAAAESL-PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp --SEEEECCBTTBC-CGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred --CeEEEEcCHHHh-hhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 277888877654 32 2366888877532100 0112568999999999999988
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-09 Score=98.15 Aligned_cols=108 Identities=17% Similarity=0.109 Sum_probs=81.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+.+|||||||+|..+..+++. .++.+++++|. +.+.+.+++. +...+..++ |+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-------------------~~~~~~~~~---v~ 232 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRR----HPQLTGQIWDL-PTTRDAARKT-------------------IHAHDLGGR---VE 232 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHH----CTTCEEEEEEC-GGGHHHHHHH-------------------HHHTTCGGG---EE
T ss_pred CCEEEEeCCCcCHHHHHHHHh----CCCCeEEEEEC-HHHHHHHHHH-------------------HHhcCCCCc---eE
Confidence 789999999999999999985 34789999999 7788777652 333333344 88
Q ss_pred eeecchhhhhhhcCCcEeEEEEcC-CCCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDA-GHDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..+|..+..+..+..||+|++-. -|.+.+ ....++.+.+.|+|||.+++.|...
T Consensus 233 ~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (352)
T 3mcz_A 233 FFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTM 290 (352)
T ss_dssp EEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred EEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 888887664222456799999754 343443 3678999999999999999888765
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=6e-09 Score=101.46 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=78.5
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.++|||||||+|..++..|++ + -.+|++||.++ +.+.|++ ++...|+.++
T Consensus 81 ~~~~k~VLDvG~GtGiLs~~Aa~a----G-A~~V~ave~s~-~~~~a~~-------------------~~~~n~~~~~-- 133 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGILSIFCAQA----G-ARRVYAVEASA-IWQQARE-------------------VVRFNGLEDR-- 133 (376)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT----T-CSEEEEEECST-THHHHHH-------------------HHHHTTCTTT--
T ss_pred hcCCCEEEEeCCCccHHHHHHHHh----C-CCEEEEEeChH-HHHHHHH-------------------HHHHcCCCce--
Confidence 357889999999999999988874 3 35899999985 7777765 4445566666
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEE---cCCCCCCcHHH-HHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEI---DAGHDFNSAWA-DINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfI---Da~h~~~~v~~-dl~~~~~lL~pGGvIi~dD~ 288 (327)
|.+..++..+. .+++++|+|+. +....++.... .+....++|+|||+|+-+-+
T Consensus 134 -i~~i~~~~~~~--~lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~a 190 (376)
T 4hc4_A 134 -VHVLPGPVETV--ELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASA 190 (376)
T ss_dssp -EEEEESCTTTC--CCSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEE
T ss_pred -EEEEeeeeeee--cCCccccEEEeecccccccccchhhhHHHHHHhhCCCCceECCccc
Confidence 88888887763 44679999986 33444454444 45566689999999986544
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.7e-09 Score=97.98 Aligned_cols=111 Identities=9% Similarity=-0.043 Sum_probs=74.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEE--EEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQI--LCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDSVL 232 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V--~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~v~ 232 (327)
+.+|||||||+|..+..+++.+....++.++ +++|++++|.+.+++.. ... +. .. +
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~-------------------~~~~~~-~~-v 111 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELV-------------------AKTSNL-EN-V 111 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHH-------------------HTCSSC-TT-E
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHH-------------------HhccCC-Cc-c
Confidence 4689999999998887665443222345654 99999999998876632 111 11 11 1
Q ss_pred ceEeeecchhhhhh-----hcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLC-----EWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~-----~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.+.+..+++.+... ..+++||+|+.- +-|..++....++++.++|||||++++-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~ 172 (292)
T 2aot_A 112 KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIV 172 (292)
T ss_dssp EEEEECSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eEEEEecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 13444566554321 125789999975 44545667789999999999999988754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-08 Score=96.70 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=81.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|. +.+.+.+++ ++...++.++ |
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-------------------~~~~~~l~~~---v 254 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDA----FPGLRGTLLER-PPVAEEARE-------------------LLTGRGLADR---C 254 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHH-------------------HHHHTTCTTT---E
T ss_pred cCcEEEEeCCCccHHHHHHHHH----CCCCeEEEEcC-HHHHHHHHH-------------------hhhhcCcCCc---e
Confidence 4689999999999999999985 45789999999 888877765 3333444455 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCCCcH--HHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSA--WADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v--~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..+|..+.++ ..||+|++-. -|.+++. ...++.+.+.|+|||.+++.|...
T Consensus 255 ~~~~~d~~~~~p---~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 255 EILPGDFFETIP---DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp EEEECCTTTCCC---SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred EEeccCCCCCCC---CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 888888764333 3799999754 3444432 367999999999999999988776
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-09 Score=97.05 Aligned_cols=144 Identities=15% Similarity=0.041 Sum_probs=83.7
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH----HHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL----YFQ 217 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~----~~~ 217 (327)
.++..+++.. ++.+|||+|||+|..++.+++.++ .++.+|+++|+++.+.+.|+++.......+.... ..+
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~--~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHR--RSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTG--GGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhc--cCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 3555554443 457999999999999999998521 2367999999999999988875421100000000 000
Q ss_pred --------HH------HHHhh-hccCCcccceEeeecchhhhhhh----cCCcEeEEEEcCCC----C------CCcHHH
Q 041517 218 --------FL------QNVIY-QNAIDSVLPVPFSSGSALTKLCE----WGVVGDLIEIDAGH----D------FNSAWA 268 (327)
Q Consensus 218 --------Fl------~nv~~-~g~~~~v~~V~~~~gda~~~L~~----l~~~fDLIfIDa~h----~------~~~v~~ 268 (327)
+. .++.. ....+...|..+..+|..+.++. .+.+||+|+.+--. . ......
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 00 00110 00001112233777776664421 23589999987321 1 022346
Q ss_pred HHHHHHccCCCCeEEEEEcCCC
Q 041517 269 DINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 269 dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.++.+.++|+|||++++.+..+
T Consensus 196 ~l~~~~~~LkpgG~l~~~~~~~ 217 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTDRSR 217 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEESSS
T ss_pred HHHHHHHhcCCCcEEEEeCcch
Confidence 7889999999999999865544
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-09 Score=97.16 Aligned_cols=103 Identities=10% Similarity=-0.036 Sum_probs=70.8
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|..++.+|+. +.+|++||.++.|.+.+++... .. .
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~------g~~V~gvD~S~~ml~~Ar~~~~-------------------~~-----~ 91 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALER------GASVTVFDFSQRMCDDLAEALA-------------------DR-----C 91 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHTS-------------------SS-----C
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhc------CCEEEEEECCHHHHHHHHHHHH-------------------hc-----c
Confidence 3345679999999999999999984 6799999999999998876432 10 1
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCC-C--CcHHHHHHHHHccCCCCeEEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-F--NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~--~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+.+...+. +.....+++||+|+.+.... . ......++.+.++| |||++++.
T Consensus 92 v~~~~~~~~~-~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS 147 (261)
T 3iv6_A 92 VTIDLLDITA-EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS 147 (261)
T ss_dssp CEEEECCTTS-CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred ceeeeeeccc-ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence 1122222211 00012357899999986532 2 33456788999999 99998875
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.7e-09 Score=94.73 Aligned_cols=113 Identities=9% Similarity=-0.002 Sum_probs=79.8
Q ss_pred HHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.+..+.... +..+|||||||+|..+..+++. ..+|+++|+++.+.+.+++...
T Consensus 46 ~~~~~~~~~~~~~~vLD~GcG~G~~~~~la~~------~~~v~gvD~s~~~~~~a~~~~~-------------------- 99 (245)
T 3ggd_A 46 DLPRFELLFNPELPLIDFACGNGTQTKFLSQF------FPRVIGLDVSKSALEIAAKENT-------------------- 99 (245)
T ss_dssp HHHHHTTTSCTTSCEEEETCTTSHHHHHHHHH------SSCEEEEESCHHHHHHHHHHSC--------------------
T ss_pred HHHHHhhccCCCCeEEEEcCCCCHHHHHHHHh------CCCEEEEECCHHHHHHHHHhCc--------------------
Confidence 344444333 3578999999999999999985 3389999999998887765321
Q ss_pred hccCCcccceEeeecchhhhhhh--c--CCcEeEEEEcCCCC-CC--cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCE--W--GVVGDLIEIDAGHD-FN--SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~--l--~~~fDLIfIDa~h~-~~--~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..+ +.+..++..+.-.. + +.+||+|+...... .+ .....++.+.+.|+|||++++-++..
T Consensus 100 ---~~~---~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 100 ---AAN---ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp ---CTT---EEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred ---ccC---ceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 011 77777776552111 1 13489999886432 33 45688999999999999988877764
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-08 Score=94.16 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=79.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|||||||+|..|.++++. + .++|++||++++|.+.+.+... ++...... . +
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~----g-a~~V~aVDvs~~mL~~a~r~~~----------------rv~~~~~~-n---i 139 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQN----G-AKLVYAVDVGTNQLVWKLRQDD----------------RVRSMEQY-N---F 139 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----T-CSEEEEECSSSSCSCHHHHTCT----------------TEEEECSC-C---G
T ss_pred cccEEEecCCCccHHHHHHHhC----C-CCEEEEEECCHHHHHHHHHhCc----------------ccceeccc-C---c
Confidence 3569999999999999999873 2 4699999999999986432100 00000000 0 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE---cCCCCCC---------chh----HH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH---DYFTAAD---------NRG----VR 298 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d---D~~~~~~---------~~G----V~ 298 (327)
+.... +.++ ..+||+|.+|.... .....+.++.++|+|||.+++- ++-.... .+. +.
T Consensus 140 ~~l~~---~~l~--~~~fD~v~~d~sf~--sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~ 212 (291)
T 3hp7_A 140 RYAEP---VDFT--EGLPSFASIDVSFI--SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVL 212 (291)
T ss_dssp GGCCG---GGCT--TCCCSEEEECCSSS--CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHH
T ss_pred eecch---hhCC--CCCCCEEEEEeeHh--hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHH
Confidence 11111 1122 13499999997643 3457899999999999988775 2211110 011 44
Q ss_pred HHHHHHHHHcCCeEE
Q 041517 299 RAVNLFAKINGLKVQ 313 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~ 313 (327)
+-+.+++...|+.+.
T Consensus 213 ~~v~~~~~~~Gf~v~ 227 (291)
T 3hp7_A 213 ETVTAFAVDYGFSVK 227 (291)
T ss_dssp HHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHCCCEEE
Confidence 556677788898875
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-09 Score=93.30 Aligned_cols=140 Identities=10% Similarity=-0.002 Sum_probs=90.9
Q ss_pred HHHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 144 GAVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 144 g~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
..|+..+...+ .+.+|||+|||+|-.++.++. ..++.+++++|+++.|.+++++ |+
T Consensus 37 d~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~----~~p~a~~~A~Di~~~~leiar~-------------------~~ 93 (200)
T 3fzg_A 37 NDFYTYVFGNIKHVSSILDFGCGFNPLALYQWN----ENEKIIYHAYDIDRAEIAFLSS-------------------II 93 (200)
T ss_dssp HHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHC----SSCCCEEEEECSCHHHHHHHHH-------------------HH
T ss_pred HHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHh----cCCCCEEEEEeCCHHHHHHHHH-------------------HH
Confidence 34555544443 489999999999999999986 4567899999999999999887 44
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC-CCCchh----
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGHDYFT-AADNRG---- 296 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~-~~~~~G---- 296 (327)
...|..++ +++ .+..+. ..+++||+|..= .-|--......+..++..|+|||++|--+... ...-+|
T Consensus 94 ~~~g~~~~---v~~--~d~~~~--~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~ 166 (200)
T 3fzg_A 94 GKLKTTIK---YRF--LNKESD--VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEEN 166 (200)
T ss_dssp HHSCCSSE---EEE--ECCHHH--HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCC
T ss_pred HhcCCCcc---EEE--eccccc--CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhh
Confidence 44454433 555 333332 235789999853 22211111123568999999999999888332 122334
Q ss_pred HHHHHHHHHHHcCCeEE
Q 041517 297 VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 297 V~~Av~~f~~~~gl~v~ 313 (327)
..+-++.+..+....++
T Consensus 167 Y~~~~~~~~~~~~~~~~ 183 (200)
T 3fzg_A 167 YQLWFESFTKGWIKILD 183 (200)
T ss_dssp HHHHHHHHTTTTSCEEE
T ss_pred HHHHHHHhccCcceeee
Confidence 55666666655555443
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.84 E-value=9.8e-09 Score=87.96 Aligned_cols=123 Identities=9% Similarity=0.057 Sum_probs=83.9
Q ss_pred HHHHHHHHhh--cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 144 GAVFGNLIDK--VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 144 g~lL~~L~~~--~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..++.. ++. .++++|||+|||+|..++.+++. . +|+++|+++.+.+.
T Consensus 11 ~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~------~-~v~gvD~s~~~~~~----------------------- 59 (170)
T 3q87_B 11 YTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKR------N-TVVSTDLNIRALES----------------------- 59 (170)
T ss_dssp HHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTT------S-EEEEEESCHHHHHT-----------------------
T ss_pred HHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhc------C-cEEEEECCHHHHhc-----------------------
Confidence 344444 444 56789999999999999999873 3 99999998876643
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC----------CcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF----------NSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~----------~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
..+ +++..++..+.++ +++||+|+.+..... ......++.+.+.+ |||++++.....
T Consensus 60 ------~~~---~~~~~~d~~~~~~--~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~- 126 (170)
T 3q87_B 60 ------HRG---GNLVRADLLCSIN--QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA- 126 (170)
T ss_dssp ------CSS---SCEEECSTTTTBC--GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-
T ss_pred ------ccC---CeEEECChhhhcc--cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC-
Confidence 011 5667777766333 278999999743211 01246778888888 999998866543
Q ss_pred CCchhHHHHHHHHHHHcCCeEEE
Q 041517 292 ADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 292 ~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
.-.+.+..++++.|+++..
T Consensus 127 ----~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 127 ----NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp ----GCHHHHHHHHHHTTCEEEE
T ss_pred ----CCHHHHHHHHHHCCCcEEE
Confidence 1234556666777887543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.83 E-value=8.4e-09 Score=91.64 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=76.7
Q ss_pred HHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.+..+.+..+ ..+|||||||+|..+..+++. .+++++|+++.+.+.+++. ...
T Consensus 23 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-------~~v~~vD~s~~~~~~a~~~-------------------~~~ 76 (243)
T 3d2l_A 23 WVAWVLEQVEPGKRIADIGCGTGTATLLLADH-------YEVTGVDLSEEMLEIAQEK-------------------AME 76 (243)
T ss_dssp HHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT-------SEEEEEESCHHHHHHHHHH-------------------HHH
T ss_pred HHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC-------CeEEEEECCHHHHHHHHHh-------------------hhh
Confidence 4444444444 479999999999999888761 7999999999998877663 221
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC--CCC---CcHHHHHHHHHccCCCCeEEEEE
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG--HDF---NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~--h~~---~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+ .+ +.+..++..+. + ..++||+|++..+ +.. ......++.+.++|+|||+++++
T Consensus 77 ~~--~~---~~~~~~d~~~~-~-~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 77 TN--RH---VDFWVQDMREL-E-LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp TT--CC---CEEEECCGGGC-C-CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cC--Cc---eEEEEcChhhc-C-CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 12 12 67777776553 2 2478999998642 211 34556789999999999999984
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-09 Score=92.26 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=80.4
Q ss_pred HHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.+...+.+.. +..+|||||||+|..+..+++. +. .+++++|+++.+.+.+++...
T Consensus 31 ~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~----~~-~~v~~~D~s~~~~~~a~~~~~------------------- 86 (215)
T 2pxx_A 31 SFRALLEPELRPEDRILVLGCGNSALSYELFLG----GF-PNVTSVDYSSVVVAAMQACYA------------------- 86 (215)
T ss_dssp HHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHT----TC-CCEEEEESCHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHc----CC-CcEEEEeCCHHHHHHHHHhcc-------------------
Confidence 3444454443 4579999999999999999984 32 289999999998887765321
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-------C---------CCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-------D---------FNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-------~---------~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
. ..+ +.+..++..+. +..+++||+|+..... . .......++.+.++|+|||++++.+
T Consensus 87 ~---~~~---i~~~~~d~~~~-~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 87 H---VPQ---LRWETMDVRKL-DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp T---CTT---CEEEECCTTSC-CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c---CCC---cEEEEcchhcC-CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 1 012 67777776552 3234789999975321 0 1234577899999999999999988
Q ss_pred CCC
Q 041517 288 YFT 290 (327)
Q Consensus 288 ~~~ 290 (327)
+..
T Consensus 160 ~~~ 162 (215)
T 2pxx_A 160 SAA 162 (215)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-09 Score=96.51 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=72.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++... . .
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~l~~a~~~~~------------------------~----~ 99 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGV------------------------K----N 99 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTC------------------------S----C
T ss_pred CCCeEEEeCCCcCHHHHHHHHc------CCeEEEEeCCHHHHHHHHhhcC------------------------C----C
Confidence 5789999999999999999873 5799999999998887765211 0 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC--CCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG--HDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~--h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+..++..+ ++..+++||+|++... |-.......++++.+.|+|||++++....
T Consensus 100 -~~~~d~~~-~~~~~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 100 -VVEAKAED-LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp -EEECCTTS-CCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -EEECcHHH-CCCCCCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 33444433 2322478999998642 22234678899999999999999987655
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-08 Score=97.44 Aligned_cols=133 Identities=12% Similarity=-0.010 Sum_probs=88.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..++|||+|||+|..++.+++. ++..+|+++|.++.+.+.+++ |+...+.. +
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~----~~~~~v~~vD~s~~~l~~a~~-------------------~~~~~~~~-----~ 247 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARH----SPKIRLTLCDVSAPAVEASRA-------------------TLAANGVE-----G 247 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHH----CTTCBCEEEESBHHHHHHHHH-------------------HHHHTTCC-----C
T ss_pred CCCeEEEecCccCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHH-------------------HHHHhCCC-----C
Confidence 4679999999999999999985 456799999999998888776 33322322 4
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCC------CCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHD------FNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~------~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
++..++..+. .+++||+|+.+.... .......++.+.+.|+|||++++..... . .....++....
T Consensus 248 ~~~~~d~~~~---~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~-~---~~~~~l~~~f~-- 318 (343)
T 2pjd_A 248 EVFASNVFSE---VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF-L---PYPDVLDETFG-- 318 (343)
T ss_dssp EEEECSTTTT---CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT-S---SHHHHHHHHHS--
T ss_pred EEEEcccccc---ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC-C---CcHHHHHHhcC--
Confidence 4556665542 257899999975432 1234567899999999999888754433 1 22334444433
Q ss_pred CCeEEEccceEEEecc
Q 041517 309 GLKVQIDGQHWVIHSA 324 (327)
Q Consensus 309 gl~v~~~gq~w~i~~~ 324 (327)
.++.......+.|.+.
T Consensus 319 ~~~~~~~~~gf~v~~~ 334 (343)
T 2pjd_A 319 FHEVIAQTGRFKVYRA 334 (343)
T ss_dssp CCEEEEECSSEEEEEE
T ss_pred ceEEEeeCCCEEEEEE
Confidence 3454445555655544
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=90.00 Aligned_cols=119 Identities=13% Similarity=0.018 Sum_probs=80.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..+....+..+|||||||+|..+..++ .+++++|+++..
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~---------~~v~~~D~s~~~----------------------------- 98 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR---------NPVHCFDLASLD----------------------------- 98 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC---------SCEEEEESSCSS-----------------------------
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh---------ccEEEEeCCCCC-----------------------------
Confidence 355555444456899999999999876652 579999998861
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+.+..++..+ ++..+++||+|+.............++.+.+.|+|||++++.++... +. -.+.+..+
T Consensus 99 ---------~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~--~~-~~~~~~~~ 165 (215)
T 2zfu_A 99 ---------PRVTVCDMAQ-VPLEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVSSR--FE-DVRTFLRA 165 (215)
T ss_dssp ---------TTEEESCTTS-CSCCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECGGG--CS-CHHHHHHH
T ss_pred ---------ceEEEecccc-CCCCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcCCC--CC-CHHHHHHH
Confidence 1122233222 22224689999976543346677889999999999999999887642 11 23556666
Q ss_pred HHHcCCeEEE
Q 041517 305 AKINGLKVQI 314 (327)
Q Consensus 305 ~~~~gl~v~~ 314 (327)
++..|+++..
T Consensus 166 l~~~Gf~~~~ 175 (215)
T 2zfu_A 166 VTKLGFKIVS 175 (215)
T ss_dssp HHHTTEEEEE
T ss_pred HHHCCCEEEE
Confidence 7778887653
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.5e-09 Score=95.99 Aligned_cols=114 Identities=14% Similarity=0.145 Sum_probs=76.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. ...+++++|+++.+.+.+++... .............+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~l~~a~~~~~----------------~~~~~~~~~~~~~~ 92 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKG-----RINKLVCTDIADVSVKQCQQRYE----------------DMKNRRDSEYIFSA 92 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHH----------------HHHSSSCC-CCCEE
T ss_pred CCCEEEEECCCCcHHHHHHHhc-----CCCEEEEEeCCHHHHHHHHHHHH----------------HhhhcccccccceE
Confidence 5689999999999999998872 36799999999999887765321 10000000000127
Q ss_pred Eeeecchhhh-----hhhcCCcEeEEEEcCCCCC-----CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTK-----LCEWGVVGDLIEIDAGHDF-----NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~-----L~~l~~~fDLIfIDa~h~~-----~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..+|..+. ++..+++||+|+......+ +.....++.+.+.|+|||++++....
T Consensus 93 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 93 EFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp EEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 7888877653 1111358999997654322 22357899999999999999987654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-08 Score=95.10 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=79.4
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
.+|||||||+|..+..+++. .++.+++++|. +.+.+.+++. +...+..++ |.+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~-------------------~~~~~~~~~---v~~ 221 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQA----EPSARGVMLDR-EGSLGVARDN-------------------LSSLLAGER---VSL 221 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHH----CTTCEEEEEEC-TTCTHHHHHH-------------------THHHHHTTS---EEE
T ss_pred CEEEEeCCCchHHHHHHHHH----CCCCEEEEeCc-HHHHHHHHHH-------------------HhhcCCCCc---EEE
Confidence 79999999999999999985 34789999999 9999888763 222233334 888
Q ss_pred eecchhhhhhhcCCcEeEEEEcCC-CCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 237 SSGSALTKLCEWGVVGDLIEIDAG-HDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 237 ~~gda~~~L~~l~~~fDLIfIDa~-h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..++..+. ++..||+|++... |.+.+ ....++.+.+.|+|||.+++.|...
T Consensus 222 ~~~d~~~~---~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 275 (334)
T 2ip2_A 222 VGGDMLQE---VPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI 275 (334)
T ss_dssp EESCTTTC---CCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred ecCCCCCC---CCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 88887663 2357999998643 43433 3377899999999999999888765
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.9e-09 Score=91.11 Aligned_cols=99 Identities=15% Similarity=0.067 Sum_probs=73.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+ + ..+++++|+++.+.+.+++.. .. +
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-------~-~~~v~~vD~s~~~~~~a~~~~-------------------------~~---~ 79 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-------P-YPQKVGVEPSEAMLAVGRRRA-------------------------PE---A 79 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-------C-CSEEEEECCCHHHHHHHHHHC-------------------------TT---S
T ss_pred CCCeEEEECCCCCHhHHhC-------C-CCeEEEEeCCHHHHHHHHHhC-------------------------CC---c
Confidence 5689999999999987665 1 238999999998887765521 01 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++..+++||+|+.... +..+.....++++.++|+|||++++.+...
T Consensus 80 ~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 80 TWVRAWGEA-LPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp EEECCCTTS-CCSCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEccccc-CCCCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 566666544 3333468999998754 333456788999999999999999987765
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-08 Score=96.68 Aligned_cols=105 Identities=17% Similarity=0.130 Sum_probs=80.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||||||+|..+..+++. .++.+++++|. +.+.+.+++ ++...+..++ |+
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-------------------~~~~~~~~~~---v~ 222 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTA----HEDLSGTVLDL-QGPASAAHR-------------------RFLDTGLSGR---AQ 222 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHH-------------------HHHHTTCTTT---EE
T ss_pred CCEEEEeCCChhHHHHHHHHH----CCCCeEEEecC-HHHHHHHHH-------------------hhhhcCcCcC---eE
Confidence 579999999999999999985 34789999999 888877765 3333344445 88
Q ss_pred eeecchhhhhhhcCCcEeEEEEcC-CCCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDA-GHDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..+|..+.++ ..||+|++-. -|.+++ ....++++.+.|+|||.+++.|...
T Consensus 223 ~~~~d~~~~~p---~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 223 VVVGSFFDPLP---AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp EEECCTTSCCC---CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred EecCCCCCCCC---CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 88888764333 3799999753 344444 3678999999999999999988776
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=94.68 Aligned_cols=108 Identities=17% Similarity=0.216 Sum_probs=80.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||||||+|..+..+++. . ++.+++++|++ .+.+.+++ ++...+..++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~---~-p~~~~~~~D~~-~~~~~a~~-------------------~~~~~~~~~~--- 216 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQH---N-PNAEIFGVDWA-SVLEVAKE-------------------NARIQGVASR--- 216 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHH---C-TTCEEEEEECH-HHHHHHHH-------------------HHHHHTCGGG---
T ss_pred CCCCEEEEECCCcCHHHHHHHHH---C-CCCeEEEEecH-HHHHHHHH-------------------HHHhcCCCcc---
Confidence 35689999999999999999985 3 47899999999 88877765 3333343334
Q ss_pred eEeeecchhhhhhhcCCcEeEEEE-cCCCCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEI-DAGHDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..++..+. .....||+|++ +.-|.. +.....++.+.+.|+|||.+++.|...
T Consensus 217 v~~~~~d~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 217 YHTIAGSAFEV--DYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp EEEEESCTTTS--CCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred eEEEecccccC--CCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 88888886652 22345999998 444444 334578899999999999888877765
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-08 Score=95.17 Aligned_cols=123 Identities=17% Similarity=0.117 Sum_probs=88.6
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+..+|||+|||+|..++.+|.. .+++.+++++|+++.+.+.|++ |+...|.. .
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~---~~~~~~v~g~Di~~~~i~~a~~-------------------n~~~~g~~-~--- 255 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAAST---LGPTSPVYAGDLDEKRLGLARE-------------------AALASGLS-W--- 255 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHH---HCTTSCEEEEESCHHHHHHHHH-------------------HHHHTTCT-T---
T ss_pred CCCCEEEeCCCCcCHHHHHHHHh---hCCCceEEEEECCHHHHHHHHH-------------------HHHHcCCC-c---
Confidence 34579999999999999999985 2357899999999999988876 55555653 3
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCC-----Cc----HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHH
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDF-----NS----AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-----~~----v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+.+..+|+.+. +.....||+|+.|..... .. ....++.+.++|+|||.+++-... ...++.+
T Consensus 256 i~~~~~D~~~~-~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~--------~~~~~~~ 326 (354)
T 3tma_A 256 IRFLRADARHL-PRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR--------PALLKRA 326 (354)
T ss_dssp CEEEECCGGGG-GGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC--------HHHHHHH
T ss_pred eEEEeCChhhC-ccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC--------HHHHHHH
Confidence 88899998774 333456899999853211 01 135678889999999998885443 2345555
Q ss_pred HHHcCCeE
Q 041517 305 AKINGLKV 312 (327)
Q Consensus 305 ~~~~gl~v 312 (327)
.+ .|+++
T Consensus 327 ~~-~g~~~ 333 (354)
T 3tma_A 327 LP-PGFAL 333 (354)
T ss_dssp CC-TTEEE
T ss_pred hh-cCcEE
Confidence 55 66554
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-08 Score=95.85 Aligned_cols=101 Identities=16% Similarity=0.075 Sum_probs=80.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++. |+. ..+|+++|.++.+.+.+++ |+...+..++ +
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~------~~~V~~vD~s~~ai~~a~~-------------------n~~~n~l~~~---v 245 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKN------AKKIYAIDINPHAIELLKK-------------------NIKLNKLEHK---I 245 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTT------SSEEEEEESCHHHHHHHHH-------------------HHHHTTCTTT---E
T ss_pred CCCEEEEccCccCHHHHh-ccC------CCEEEEEECCHHHHHHHHH-------------------HHHHcCCCCc---E
Confidence 567999999999999999 752 6899999999999888776 4444444334 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
.+..+|+.+.+ ..||+|++|..... ...++.+.++|+|||++++.++...
T Consensus 246 ~~~~~D~~~~~----~~fD~Vi~dpP~~~---~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 246 IPILSDVREVD----VKGNRVIMNLPKFA---HKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp EEEESCGGGCC----CCEEEEEECCTTTG---GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred EEEECChHHhc----CCCcEEEECCcHhH---HHHHHHHHHHcCCCCEEEEEEeecC
Confidence 88899988754 68999999864322 2678889999999999999888763
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.7e-08 Score=89.54 Aligned_cols=107 Identities=10% Similarity=0.023 Sum_probs=77.3
Q ss_pred CCCEEEEEcCcc---hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 155 RPRVIIEVGSFL---GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 155 ~p~~VLEIGt~~---G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
+..+|||||||+ |..+..+++ ..++.+|++||.++.|.+.+++. +.. .++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~----~~p~~~v~~vD~sp~~l~~Ar~~-------------------~~~---~~~- 129 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQS----VNPDARVVYVDIDPMVLTHGRAL-------------------LAK---DPN- 129 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHH----HCTTCEEEEEESSHHHHHHHHHH-------------------HTT---CTT-
T ss_pred CCCEEEEECCCCCCCChHHHHHHH----hCCCCEEEEEECChHHHHHHHHh-------------------cCC---CCC-
Confidence 457999999999 987766555 34578999999999999888763 211 122
Q ss_pred cceEeeecchhhh--h-------hhcC-CcEeEEEEcCC-CCCC--cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 232 LPVPFSSGSALTK--L-------CEWG-VVGDLIEIDAG-HDFN--SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 232 ~~V~~~~gda~~~--L-------~~l~-~~fDLIfIDa~-h~~~--~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+..+|..+. + ..++ .+||+|++-+. |-.+ .....++++.+.|+|||++++.+...
T Consensus 130 --v~~~~~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 130 --TAVFTADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp --EEEEECCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred --eEEEEeeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 77777776532 1 1122 47899997653 3222 36788999999999999999999875
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.1e-08 Score=92.97 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=79.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|+ +.+.+.+++ ++...+..++ +
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~-------------------~~~~~~~~~~---v 242 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNE-------------------NAAEKGVADR---M 242 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHH----CTTCEEEEEEC-GGGHHHHHH-------------------HHHHTTCTTT---E
T ss_pred CCCEEEEECCcccHHHHHHHHH----CCCCeEEEEec-HHHHHHHHH-------------------HHHhcCCCCC---E
Confidence 4689999999999999999985 34789999999 999887766 3333344444 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..+|..+. + . ..+|+|++... |.+.+ ....++.+.+.|+|||.+++.|...
T Consensus 243 ~~~~~d~~~~-~-~-~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 243 RGIAVDIYKE-S-Y-PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp EEEECCTTTS-C-C-CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred EEEeCccccC-C-C-CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 8888887653 2 2 23499987643 44444 5677999999999999998777554
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.4e-08 Score=97.14 Aligned_cols=104 Identities=14% Similarity=0.142 Sum_probs=81.8
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-------
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ------- 225 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~------- 225 (327)
..++.+|||+|||+|..++.+|+. .+ ..+|+++|+++...+.+++ |+...
T Consensus 45 ~~~~~~VLDl~aGtG~~~l~~a~~---~~-~~~V~avDi~~~av~~a~~-------------------N~~~n~~~~~~~ 101 (378)
T 2dul_A 45 ILNPKIVLDALSATGIRGIRFALE---TP-AEEVWLNDISEDAYELMKR-------------------NVMLNFDGELRE 101 (378)
T ss_dssp HHCCSEEEESSCTTSHHHHHHHHH---SS-CSEEEEEESCHHHHHHHHH-------------------HHHHHCCSCCEE
T ss_pred HcCCCEEEECCCchhHHHHHHHHh---CC-CCeEEEEECCHHHHHHHHH-------------------HHHHhccccccc
Confidence 347889999999999999999985 33 5689999999999888877 44333
Q ss_pred --------ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 226 --------NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 226 --------g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.. . +.+..+|+.+.+..+..+||+|++|.- ......++.+++.|++||++++.
T Consensus 102 ~~~~~~~~gl~-~---i~v~~~Da~~~~~~~~~~fD~I~lDP~---~~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 102 SKGRAILKGEK-T---IVINHDDANRLMAERHRYFHFIDLDPF---GSPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp CSSEEEEESSS-E---EEEEESCHHHHHHHSTTCEEEEEECCS---SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccccCCC-c---eEEEcCcHHHHHHhccCCCCEEEeCCC---CCHHHHHHHHHHhcCCCCEEEEE
Confidence 332 1 788899998877665678999999863 22347889999999999988775
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-08 Score=96.08 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=78.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|+ +.+.+.+++ ++...+..++ |
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~-------------------~~~~~~~~~~---v 234 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALR----APHLRGTLVEL-AGPAERARR-------------------RFADAGLADR---V 234 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHH-------------------HHHHTTCTTT---E
T ss_pred CCCEEEEECCCcCHHHHHHHHH----CCCCEEEEEeC-HHHHHHHHH-------------------HHHhcCCCCc---e
Confidence 4689999999999999999985 35789999999 888887765 3333344444 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcH--HHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSA--WADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v--~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.+..++..+.++ ..||+|++... |.+... ...++.+.+.|+|||.+++.|.
T Consensus 235 ~~~~~d~~~~~~---~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 235 TVAEGDFFKPLP---VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEECCTTSCCS---CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEeCCCCCcCC---CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 888888765333 34999998643 333332 3679999999999998888777
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.1e-09 Score=95.68 Aligned_cols=152 Identities=12% Similarity=0.014 Sum_probs=90.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc--
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL-- 232 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~-- 232 (327)
++.+|||||||+|..+..+++. +. .+|+++|+++.+.+.+++........-+-....++..+.. +..+...
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~----~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 128 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACE----SF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLE--GNRMKGPEK 128 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGG----TE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHT--TTCSCHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhc----cc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhccc--ccccchHHH
Confidence 4578999999999999888763 22 5899999999999888765421100000001112222211 1100000
Q ss_pred ------ce-EeeecchhhhhhhcC---CcEeEEEEcCCC-----CCCcHHHHHHHHHccCCCCeEEEEEcCCCCC-----
Q 041517 233 ------PV-PFSSGSALTKLCEWG---VVGDLIEIDAGH-----DFNSAWADINRAWRILRPGGVIFGHDYFTAA----- 292 (327)
Q Consensus 233 ------~V-~~~~gda~~~L~~l~---~~fDLIfIDa~h-----~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~----- 292 (327)
.+ .+..++..+..+..+ ++||+|+.-... ........++.+.++|+|||++++.+.....
T Consensus 129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 208 (265)
T 2i62_A 129 EEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIG 208 (265)
T ss_dssp HHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEET
T ss_pred HHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcC
Confidence 05 666777655322223 789999976442 2234567789999999999999987754210
Q ss_pred -----CchhHHHHHHHHHHHcCCeEE
Q 041517 293 -----DNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 -----~~~GV~~Av~~f~~~~gl~v~ 313 (327)
...--.+.+..++...|+++.
T Consensus 209 ~~~~~~~~~~~~~~~~~l~~aGf~~~ 234 (265)
T 2i62_A 209 EQKFSSLPLGWETVRDAVEEAGYTIE 234 (265)
T ss_dssp TEEEECCCCCHHHHHHHHHHTTCEEE
T ss_pred CccccccccCHHHHHHHHHHCCCEEE
Confidence 000023456667778888764
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-08 Score=93.25 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=79.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|+ +.+.+.+++ ++...+..++ +
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~-------------------~~~~~~~~~~---v 235 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARR----APHVSATVLEM-AGTVDTARS-------------------YLKDEGLSDR---V 235 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-TTHHHHHHH-------------------HHHHTTCTTT---E
T ss_pred cCcEEEEeCCcCcHHHHHHHHh----CCCCEEEEecC-HHHHHHHHH-------------------HHHhcCCCCc---e
Confidence 4679999999999999999985 35789999999 888887766 3333344444 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCCCcH--HHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSA--WADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v--~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..+|..+.++ ..||+|++... |.+... ...++.+.+.|+|||.+++.|..
T Consensus 236 ~~~~~d~~~~~~---~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 236 DVVEGDFFEPLP---RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEECCTTSCCS---SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred EEEeCCCCCCCC---CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 888888765333 35999997643 334332 46799999999999998888776
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=8.3e-08 Score=82.63 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=65.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCC--------cEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLD--------SQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN 226 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~--------~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g 226 (327)
+..+|||||||+|..++.+++. ++.. ++|+++|+++.... . +
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~---~~~~~~~~~~~~~~v~~vD~s~~~~~---~-------------------~----- 71 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQK---VNAAGTDPSSPVGFVLGVDLLHIFPL---E-------------------G----- 71 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHH---TTTTCCCTTSCCCEEEEECSSCCCCC---T-------------------T-----
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---hccccccccCCCceEEEEechhcccC---C-------------------C-----
Confidence 3579999999999999999985 3432 89999999984310 0 1
Q ss_pred cCCcccceEee-ecchhh-----hh-hhc-CCcEeEEEEcCCCCC--C---cH-------HHHHHHHHccCCCCeEEEEE
Q 041517 227 AIDSVLPVPFS-SGSALT-----KL-CEW-GVVGDLIEIDAGHDF--N---SA-------WADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 227 ~~~~v~~V~~~-~gda~~-----~L-~~l-~~~fDLIfIDa~h~~--~---~v-------~~dl~~~~~lL~pGGvIi~d 286 (327)
+.+. .++..+ .+ ..+ +.+||+|+.|..... . +. ...++.+.++|+|||.+++.
T Consensus 72 -------~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (196)
T 2nyu_A 72 -------ATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCK 144 (196)
T ss_dssp -------CEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2222 222111 01 111 257999999874221 1 11 35688999999999999998
Q ss_pred cCCC
Q 041517 287 DYFT 290 (327)
Q Consensus 287 D~~~ 290 (327)
++..
T Consensus 145 ~~~~ 148 (196)
T 2nyu_A 145 TWAG 148 (196)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 7754
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-08 Score=89.12 Aligned_cols=98 Identities=14% Similarity=0.110 Sum_probs=71.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. +.+++++|+++.+.+.+++.. .
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~------~~~~~~~D~~~~~~~~~~~~~------------------------------~ 75 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN------GTRVSGIEAFPEAAEQAKEKL------------------------------D 75 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT------TCEEEEEESSHHHHHHHHTTS------------------------------S
T ss_pred CCCcEEEeCCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHhC------------------------------C
Confidence 5789999999999999998872 489999999988877665421 1
Q ss_pred Eeeecchhhh-hhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTK-LCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~-L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
++..++..+. ++..+++||+|+.... +........++.+.+.|+|||++++...
T Consensus 76 ~~~~~d~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 131 (230)
T 3cc8_A 76 HVVLGDIETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIP 131 (230)
T ss_dssp EEEESCTTTCCCCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEE
T ss_pred cEEEcchhhcCCCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeC
Confidence 2334444331 1222478999998644 2234556889999999999999998754
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.4e-09 Score=93.25 Aligned_cols=88 Identities=15% Similarity=0.027 Sum_probs=63.4
Q ss_pred HHHHHHHhhc-----CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 145 AVFGNLIDKV-----RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 145 ~lL~~L~~~~-----~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.++..++... ++.+|||+|||+|..++.+++.. ++.+|+++|+++.+.+.|++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~----~~~~v~gvD~s~~~~~~a~~------------------ 107 (254)
T 2h00_A 50 HWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATL----NGWYFLATEVDDMCFNYAKK------------------ 107 (254)
T ss_dssp HHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHH----HCCEEEEEESCHHHHHHHHH------------------
T ss_pred HHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhC----CCCeEEEEECCHHHHHHHHH------------------
Confidence 4555555433 35699999999999999998852 26899999999999988876
Q ss_pred HHHhhhccCCcccceEeeecchhhh-hhhcC----CcEeEEEEc
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTK-LCEWG----VVGDLIEID 258 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~-L~~l~----~~fDLIfID 258 (327)
|+...++.++ +.+..+|+.+. +..+. .+||+|+.+
T Consensus 108 -~~~~~~~~~~---v~~~~~d~~~~~~~~~~~~~~~~fD~i~~n 147 (254)
T 2h00_A 108 -NVEQNNLSDL---IKVVKVPQKTLLMDALKEESEIIYDFCMCN 147 (254)
T ss_dssp -HHHHTTCTTT---EEEEECCTTCSSTTTSTTCCSCCBSEEEEC
T ss_pred -HHHHcCCCcc---EEEEEcchhhhhhhhhhcccCCcccEEEEC
Confidence 4443444444 78888886552 22222 589999998
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.72 E-value=6.5e-08 Score=91.62 Aligned_cols=134 Identities=12% Similarity=-0.038 Sum_probs=89.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..++...+..+|||+|||.|..|+.||+. ++..++|+++|+++.+.+.+++ |+...
T Consensus 93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~---~~~~g~V~a~D~~~~~l~~~~~-------------------n~~r~ 150 (309)
T 2b9e_A 93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAAL---LKNQGKIFAFDLDAKRLASMAT-------------------LLARA 150 (309)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHH---HTTCSEEEEEESCHHHHHHHHH-------------------HHHHT
T ss_pred HHHHHhCCCCCCEEEEeCCChhHHHHHHHHH---hCCCCEEEEEeCCHHHHHHHHH-------------------HHHHc
Confidence 4444555445679999999999999999986 3557999999999988877665 45444
Q ss_pred ccCCcccceEeeecchhhhhhhc--CCcEeEEEEcCCCCCC------------------cH-------HHHHHHHHccCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFN------------------SA-------WADINRAWRILR 278 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~------------------~v-------~~dl~~~~~lL~ 278 (327)
|.. + |.+..+|+.+..... ..+||.|++|+.-... .+ .+.|+.++++++
T Consensus 151 g~~-~---v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~ 226 (309)
T 2b9e_A 151 GVS-C---CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS 226 (309)
T ss_dssp TCC-S---EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT
T ss_pred CCC-e---EEEEeCChHhcCccccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC
Confidence 542 2 788888877643321 1579999999542110 00 123667788886
Q ss_pred CCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 279 PGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 279 pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
||+|+...+...+ ..-.+.|..|.+++
T Consensus 227 -gG~lvYsTCs~~~--~Ene~~v~~~l~~~ 253 (309)
T 2b9e_A 227 -LQRLVYSTCSLCQ--EENEDVVRDALQQN 253 (309)
T ss_dssp -CCEEEEEESCCCG--GGTHHHHHHHHTTS
T ss_pred -CCEEEEECCCCCh--HHhHHHHHHHHHhC
Confidence 9999988776532 12234556666554
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=88.29 Aligned_cols=128 Identities=13% Similarity=0.026 Sum_probs=87.3
Q ss_pred HHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc
Q 041517 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN 226 (327)
Q Consensus 147 L~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g 226 (327)
+..+.+..++.+|||||||+|..+..+++ . +++|+++.+.+.+++ +
T Consensus 39 ~~~l~~~~~~~~vLDiG~G~G~~~~~l~~-------~---~~vD~s~~~~~~a~~-------------------~----- 84 (219)
T 1vlm_A 39 LQAVKCLLPEGRGVEIGVGTGRFAVPLKI-------K---IGVEPSERMAEIARK-------------------R----- 84 (219)
T ss_dssp HHHHHHHCCSSCEEEETCTTSTTHHHHTC-------C---EEEESCHHHHHHHHH-------------------T-----
T ss_pred HHHHHHhCCCCcEEEeCCCCCHHHHHHHH-------H---hccCCCHHHHHHHHh-------------------c-----
Confidence 34444445578999999999999887764 1 999999888776654 1
Q ss_pred cCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCc-----------
Q 041517 227 AIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYFTAADN----------- 294 (327)
Q Consensus 227 ~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~----------- 294 (327)
. +.+..++..+ ++..++.||+|+..... ..+.....++.+.+.|+|||++++.+......+
T Consensus 85 ---~---~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 157 (219)
T 1vlm_A 85 ---G---VFVLKGTAEN-LPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKS 157 (219)
T ss_dssp ---T---CEEEECBTTB-CCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-
T ss_pred ---C---CEEEEccccc-CCCCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCc
Confidence 1 5555666543 23334689999987542 234566889999999999999999876541100
Q ss_pred ---h----hHHHHHHHHHHHcCCeEEEc
Q 041517 295 ---R----GVRRAVNLFAKINGLKVQID 315 (327)
Q Consensus 295 ---~----GV~~Av~~f~~~~gl~v~~~ 315 (327)
. =-...+..+++..|+++...
T Consensus 158 ~~~~~~~~~~~~~l~~~l~~~Gf~~~~~ 185 (219)
T 1vlm_A 158 VFYKNARFFSTEELMDLMRKAGFEEFKV 185 (219)
T ss_dssp CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred chhcccccCCHHHHHHHHHHCCCeEEEE
Confidence 0 02355667778888886543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.6e-08 Score=99.73 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=75.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..++.+++. ...+|+++|.++ +.+.|++ ++...++.++ |
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~-----~~~~V~gvD~s~-~l~~A~~-------------------~~~~~gl~~~---v 209 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQA-----GARKIYAVEAST-MAQHAEV-------------------LVKSNNLTDR---I 209 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHT-----TCSEEEEEECHH-HHHHHHH-------------------HHHHTTCTTT---E
T ss_pred CCCEEEEecCcccHHHHHHHHc-----CCCEEEEEEcHH-HHHHHHH-------------------HHHHcCCCCc---E
Confidence 5689999999999999988873 256999999998 7777765 3444455455 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC--C-CCCcHHHHHHHHHccCCCCeEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG--H-DFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~--h-~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.+..++..+. .+.++||+|+.+.. | ..+.....+..+.+.|+|||++++
T Consensus 210 ~~~~~d~~~~--~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 210 VVIPGKVEEV--SLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEESCTTTC--CCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred EEEECchhhC--ccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 8888887662 23468999998754 1 123455677788999999999984
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.5e-08 Score=90.44 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=76.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||||+|..+..+++. + ..+|++||++++|.+.+++... ++...+. .. +
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~----g-~~~V~gvDis~~ml~~a~~~~~----------------~~~~~~~-~~---~ 91 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQN----G-AKLVYALDVGTNQLAWKIRSDE----------------RVVVMEQ-FN---F 91 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT----T-CSEEEEECSSCCCCCHHHHTCT----------------TEEEECS-CC---G
T ss_pred CCCEEEEEccCCCHHHHHHHhc----C-CCEEEEEcCCHHHHHHHHHhCc----------------ccccccc-ce---E
Confidence 3569999999999999999983 2 2599999999999987655321 0000000 00 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc---CCCCC---------Cchh----HH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD---YFTAA---------DNRG----VR 298 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD---~~~~~---------~~~G----V~ 298 (327)
++... +.+.. ..||.+.+|...... ...+.++.++|+|||.+++-- +.... ..+. ..
T Consensus 92 ~~~~~---~~~~~--~~~d~~~~D~v~~~l--~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~ 164 (232)
T 3opn_A 92 RNAVL---ADFEQ--GRPSFTSIDVSFISL--DLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTI 164 (232)
T ss_dssp GGCCG---GGCCS--CCCSEEEECCSSSCG--GGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHH
T ss_pred EEeCH---hHcCc--CCCCEEEEEEEhhhH--HHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHH
Confidence 11110 10111 135666666554332 478999999999999888741 11000 0111 34
Q ss_pred HHHHHHHHHcCCeEEE
Q 041517 299 RAVNLFAKINGLKVQI 314 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~~ 314 (327)
+.+.+++...|+++..
T Consensus 165 ~~l~~~l~~aGf~v~~ 180 (232)
T 3opn_A 165 EKVLKTATQLGFSVKG 180 (232)
T ss_dssp HHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHCCCEEEE
Confidence 5566778888988653
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-07 Score=91.93 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=86.5
Q ss_pred HHHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 144 GAVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 144 g~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..++..+++... +.+|||+|||+|..++.+|+. ..+|+++|.++.+.+.|++ |
T Consensus 200 ~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~------~~~V~gvd~~~~ai~~a~~-------------------n 254 (369)
T 3bt7_A 200 IQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN------FDRVLATEIAKPSVAAAQY-------------------N 254 (369)
T ss_dssp HHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG------SSEEEEECCCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc------CCEEEEEECCHHHHHHHHH-------------------H
Confidence 345555544433 578999999999999998873 4699999999999988876 4
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcC---------------CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWG---------------VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~---------------~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+...+. ++ +.+..+++.+.++.+. ..||+|++|..-.. ..+.+.+.|++||.|+..
T Consensus 255 ~~~ng~-~~---v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g-----~~~~~~~~l~~~g~ivyv 325 (369)
T 3bt7_A 255 IAANHI-DN---VQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG-----LDSETEKMVQAYPRILYI 325 (369)
T ss_dssp HHHTTC-CS---EEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC-----CCHHHHHHHTTSSEEEEE
T ss_pred HHHcCC-Cc---eEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc-----cHHHHHHHHhCCCEEEEE
Confidence 444343 22 8889999888765432 27999999954321 224566667799999888
Q ss_pred cCCCCCCchhHHHHHHHHHH
Q 041517 287 DYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 287 D~~~~~~~~GV~~Av~~f~~ 306 (327)
.+.. .-..+-+..+++
T Consensus 326 sc~p----~t~ard~~~l~~ 341 (369)
T 3bt7_A 326 SCNP----ETLCKNLETLSQ 341 (369)
T ss_dssp ESCH----HHHHHHHHHHHH
T ss_pred ECCH----HHHHHHHHHHhh
Confidence 7764 123344455553
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.2e-08 Score=89.14 Aligned_cols=97 Identities=16% Similarity=0.094 Sum_probs=71.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. + ++.+++++|+++.+.+.+++... . +
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~---~-~~~~v~~vD~s~~~~~~a~~~~~-------------------------~---~ 132 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADA---L-PEITTFGLDVSKVAIKAAAKRYP-------------------------Q---V 132 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHT---C-TTSEEEEEESCHHHHHHHHHHCT-------------------------T---S
T ss_pred CCCEEEEECCCCCHHHHHHHHh---C-CCCeEEEEeCCHHHHHHHHHhCC-------------------------C---c
Confidence 4679999999999999999984 2 36799999999988877655210 1 4
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..++..+ ++..+++||+|+.-... ..++++.++|+|||++++.+...
T Consensus 133 ~~~~~d~~~-~~~~~~~fD~v~~~~~~------~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 133 TFCVASSHR-LPFSDTSMDAIIRIYAP------CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp EEEECCTTS-CSBCTTCEEEEEEESCC------CCHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEcchhh-CCCCCCceeEEEEeCCh------hhHHHHHHhcCCCcEEEEEEcCH
Confidence 555666543 33334789999964332 35789999999999998876554
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-08 Score=98.37 Aligned_cols=136 Identities=12% Similarity=0.060 Sum_probs=89.1
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
+...+++.. +..+|||||||+|..+..+++. +.+++++|+++.+.+.+++..
T Consensus 95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~------g~~v~gvD~s~~~~~~a~~~~------------------- 149 (416)
T 4e2x_A 95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEA------GVRHLGFEPSSGVAAKAREKG------------------- 149 (416)
T ss_dssp HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHT------TCEEEEECCCHHHHHHHHTTT-------------------
T ss_pred HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHc------CCcEEEECCCHHHHHHHHHcC-------------------
Confidence 344444443 3569999999999999999984 569999999998888776531
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC---------CC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT---------AA 292 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~---------~~ 292 (327)
.... ..+...+..+.++..+++||+|+.... +..+.....++++.++|+|||++++..... ..
T Consensus 150 ----~~~~---~~~~~~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~ 222 (416)
T 4e2x_A 150 ----IRVR---TDFFEKATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQ 222 (416)
T ss_dssp ----CCEE---CSCCSHHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGG
T ss_pred ----CCcc---eeeechhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhh
Confidence 0000 111112222333433578999997654 333567788999999999999999975431 00
Q ss_pred Cc-hh----HHHHHHHHHHHcCCeEE
Q 041517 293 DN-RG----VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 ~~-~G----V~~Av~~f~~~~gl~v~ 313 (327)
-+ +. -.+.+..+++..|+++.
T Consensus 223 ~~~~~~~~~s~~~l~~ll~~aGf~~~ 248 (416)
T 4e2x_A 223 IFDEHFFLFSATSVQGMAQRCGFELV 248 (416)
T ss_dssp CSTTCCEECCHHHHHHHHHHTTEEEE
T ss_pred hhhhhhhcCCHHHHHHHHHHcCCEEE
Confidence 00 00 23567778888888754
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.3e-08 Score=92.21 Aligned_cols=110 Identities=10% Similarity=-0.029 Sum_probs=70.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC--Ccccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI--DSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~--~~v~~ 233 (327)
..+|||||||+|..+..+++. ...+|++||+++.|.+.|++... + .+.. .+...
T Consensus 49 ~~~VLDlGCG~G~~l~~~~~~-----~~~~v~GiD~S~~~l~~A~~~~~----------------~---~~~~~~~~~~~ 104 (302)
T 2vdw_A 49 KRKVLAIDFGNGADLEKYFYG-----EIALLVATDPDADAIARGNERYN----------------K---LNSGIKTKYYK 104 (302)
T ss_dssp CCEEEETTCTTTTTHHHHHHT-----TCSEEEEEESCHHHHHHHHHHHH----------------H---HCC----CCCE
T ss_pred CCeEEEEecCCcHhHHHHHhc-----CCCeEEEEECCHHHHHHHHHHHH----------------h---ccccccccccc
Confidence 579999999999765555542 25799999999999998876321 1 1110 00001
Q ss_pred eEeeecch----h-hhhhh--cCCcEeEEEEcC-CC---CCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSA----L-TKLCE--WGVVGDLIEIDA-GH---DFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda----~-~~L~~--l~~~fDLIfIDa-~h---~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.+..++. . +.|+. .+++||+|++-. -| ..++....++++.++|+|||++++....
T Consensus 105 ~~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 105 FDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp EEEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cchhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 33433332 1 22321 247899998643 22 1134568899999999999999987653
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-07 Score=82.24 Aligned_cols=36 Identities=17% Similarity=0.285 Sum_probs=30.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC-CcEEEEEeCCCC
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL-DSQILCIDDFRG 194 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~-~~~V~~ID~~~~ 194 (327)
..+|||||||+|..+..+++. +++ +++|+++|+++.
T Consensus 23 ~~~vLDlGcG~G~~~~~l~~~---~~~~~~~v~gvD~s~~ 59 (201)
T 2plw_A 23 NKIILDIGCYPGSWCQVILER---TKNYKNKIIGIDKKIM 59 (201)
T ss_dssp TEEEEEESCTTCHHHHHHHHH---TTTSCEEEEEEESSCC
T ss_pred CCEEEEeCCCCCHHHHHHHHH---cCCCCceEEEEeCCcc
Confidence 468999999999999999985 343 689999999984
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-07 Score=78.03 Aligned_cols=120 Identities=15% Similarity=0.146 Sum_probs=84.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+++. + ..+++++|+++.+.+.++++ +...+. .+
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~a~~~-------------------~~~~~~-----~~ 99 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLL----G-AKEVICVEVDKEAVDVLIEN-------------------LGEFKG-----KF 99 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHHH-------------------TGGGTT-----SE
T ss_pred CcCEEEEeeCCCCHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHH-------------------HHHcCC-----CE
Confidence 4679999999999999999873 2 35899999999988877663 222232 27
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
.+..+|+.+ + +..||+|++|..... ......++.+.+.+ |++++.. +. .++-.+.+..++.+.|++
T Consensus 100 ~~~~~d~~~-~---~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~-~~----~~~~~~~~~~~l~~~g~~ 168 (207)
T 1wy7_A 100 KVFIGDVSE-F---NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH-LA----KPEVRRFIEKFSWEHGFV 168 (207)
T ss_dssp EEEESCGGG-C---CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE-EC----CHHHHHHHHHHHHHTTEE
T ss_pred EEEECchHH-c---CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE-eC----CcCCHHHHHHHHHHCCCe
Confidence 888888766 2 358999999864211 22346788888888 7766654 21 245556667777888877
Q ss_pred EEE
Q 041517 312 VQI 314 (327)
Q Consensus 312 v~~ 314 (327)
+..
T Consensus 169 ~~~ 171 (207)
T 1wy7_A 169 VTH 171 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=4.9e-08 Score=95.53 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=81.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||++||+|..++.+|..+ +.-.+|+++|.++...+.+++ |+...++.++ .+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~---~ga~~V~avDi~~~av~~~~~-------------------N~~~Ngl~~~--~v 107 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLET---SCVEKAYANDISSKAIEIMKE-------------------NFKLNNIPED--RY 107 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHC---SCEEEEEEECSCHHHHHHHHH-------------------HHHHTTCCGG--GE
T ss_pred CCCEEEECCCcccHHHHHHHHhC---CCCCEEEEEECCHHHHHHHHH-------------------HHHHhCCCCc--eE
Confidence 35799999999999999999842 212689999999988887776 5555554331 16
Q ss_pred Eeeecchhhhhh-hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLC-EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~-~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..+|+.+.+. .+...||+|++|. +......++.+.+.|++||+|++.
T Consensus 108 ~v~~~Da~~~l~~~~~~~fD~V~lDP---~g~~~~~l~~a~~~Lk~gGll~~t 157 (392)
T 3axs_A 108 EIHGMEANFFLRKEWGFGFDYVDLDP---FGTPVPFIESVALSMKRGGILSLT 157 (392)
T ss_dssp EEECSCHHHHHHSCCSSCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCCHHHHHHHhhCCCCcEEEECC---CcCHHHHHHHHHHHhCCCCEEEEE
Confidence 788999998887 6667899999998 222236788999999999988763
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-07 Score=93.19 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=76.0
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
++..+.+..+..+|||+|||+|..++.+|+. ..+|+++|.++.+.+.|++ |+...
T Consensus 281 l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~------~~~V~gvD~s~~ai~~A~~-------------------n~~~n 335 (425)
T 2jjq_A 281 LVRKVSELVEGEKILDMYSGVGTFGIYLAKR------GFNVKGFDSNEFAIEMARR-------------------NVEIN 335 (425)
T ss_dssp HHHHHHHHCCSSEEEEETCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHH-------------------HHHHH
T ss_pred HHHHhhccCCCCEEEEeeccchHHHHHHHHc------CCEEEEEECCHHHHHHHHH-------------------HHHHc
Confidence 4444444345679999999999999999984 5799999999999988876 33333
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.. +.+..+|+.+.++. .||+|++|....... ..+-..+..|+|||++++.
T Consensus 336 gl~-----v~~~~~d~~~~~~~---~fD~Vv~dPPr~g~~--~~~~~~l~~l~p~givyvs 386 (425)
T 2jjq_A 336 NVD-----AEFEVASDREVSVK---GFDTVIVDPPRAGLH--PRLVKRLNREKPGVIVYVS 386 (425)
T ss_dssp TCC-----EEEEECCTTTCCCT---TCSEEEECCCTTCSC--HHHHHHHHHHCCSEEEEEE
T ss_pred CCc-----EEEEECChHHcCcc---CCCEEEEcCCccchH--HHHHHHHHhcCCCcEEEEE
Confidence 331 77888888775432 799999986532222 3333444569999998884
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-08 Score=92.02 Aligned_cols=151 Identities=14% Similarity=-0.019 Sum_probs=84.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hccCCc---
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNAIDS--- 230 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~~~~--- 230 (327)
++.+|||||||+|..++.++. ....+|+++|+++.|.+.+++........-+.. ....++.. .+....
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~-----~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~ 142 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC-----SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWS---MYSQHACLIEGKGECWQD 142 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG-----GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCH---HHHHHHHHHHCSCCCHHH
T ss_pred CCCeEEEECCCcChHHHHhhc-----cCCCeEEEeCCCHHHHHHHHHHHhhCcccccch---hhhhHHHHhcCcccchhh
Confidence 568999999999995444333 125699999999999988876432100000000 00011110 010000
Q ss_pred ------ccceEeeecchhhhhhh-----cCCcEeEEEEcCCCCC-----CcHHHHHHHHHccCCCCeEEEEEcCCCCC--
Q 041517 231 ------VLPVPFSSGSALTKLCE-----WGVVGDLIEIDAGHDF-----NSAWADINRAWRILRPGGVIFGHDYFTAA-- 292 (327)
Q Consensus 231 ------v~~V~~~~gda~~~L~~-----l~~~fDLIfIDa~h~~-----~~v~~dl~~~~~lL~pGGvIi~dD~~~~~-- 292 (327)
-..+.+..+|..+.++. .+++||+|+.-....+ +.....++++.++|+|||++++.+.....
T Consensus 143 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~ 222 (289)
T 2g72_A 143 KERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY 222 (289)
T ss_dssp HHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE
T ss_pred hHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceE
Confidence 00034455555442221 1356999997654222 24567899999999999999987543210
Q ss_pred --------CchhHHHHHHHHHHHcCCeEE
Q 041517 293 --------DNRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 293 --------~~~GV~~Av~~f~~~~gl~v~ 313 (327)
...--.+.+..++...|+++.
T Consensus 223 ~~~~~~~~~~~~~~~~l~~~l~~aGf~~~ 251 (289)
T 2g72_A 223 LAGEARLTVVPVSEEEVREALVRSGYKVR 251 (289)
T ss_dssp EETTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred EcCCeeeeeccCCHHHHHHHHHHcCCeEE
Confidence 000023556667777888764
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.59 E-value=7.4e-08 Score=91.64 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=74.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|.. .+.. ++ ++...+..++ |
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~~-~~~~--~~-------------------~~~~~~~~~~---v 234 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLRE----HPGLQGVLLDRA-EVVA--RH-------------------RLDAPDVAGR---W 234 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHH----CTTEEEEEEECH-HHHT--TC-------------------CCCCGGGTTS---E
T ss_pred CCceEEEECCccCHHHHHHHHH----CCCCEEEEecCH-HHhh--cc-------------------cccccCCCCC---e
Confidence 3679999999999999999985 347899999993 2222 11 1111233334 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCCCcH--HHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSA--WADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v--~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..+|..+.++ .||+|++-. -|.+++. ...++++.+.|+|||.+++.|...
T Consensus 235 ~~~~~d~~~~~p----~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~ 289 (348)
T 3lst_A 235 KVVEGDFLREVP----HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVV 289 (348)
T ss_dssp EEEECCTTTCCC----CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred EEEecCCCCCCC----CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 888888764333 799999754 4545544 578999999999999999888765
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.6e-07 Score=99.26 Aligned_cols=116 Identities=12% Similarity=0.002 Sum_probs=79.4
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+...++.+|||||||+|..+..|++. .++..+|++||+++.+.+.|++.... ..|....+.
T Consensus 717 L~~~~g~rVLDVGCGTG~lai~LAr~---g~p~a~VtGVDIS~emLe~AReRLa~-------------~lnAkr~gl--- 777 (950)
T 3htx_A 717 IRESSASTLVDFGCGSGSLLDSLLDY---PTSLQTIIGVDISPKGLARAAKMLHV-------------KLNKEACNV--- 777 (950)
T ss_dssp HHHSCCSEEEEETCSSSHHHHHHTSS---CCCCCEEEEEESCHHHHHHHHHHHHH-------------HTTTTCSSC---
T ss_pred hcccCCCEEEEECCCCCHHHHHHHHh---CCCCCeEEEEECCHHHHHHHHHHhhh-------------ccchhhcCC---
Confidence 34447889999999999999999973 23458999999999999888663210 001001121
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-Cc--HHHHHHHHHccCCCCeEEEEEcC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NS--AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~--v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
..+.+..+|..+ ++...+.||+|+......+ ++ ....++.+.++|+|| ++++.+.
T Consensus 778 -~nVefiqGDa~d-Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 778 -KSATLYDGSILE-FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp -SEEEEEESCTTS-CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred -CceEEEECchHh-CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 138899998776 3444578999998654322 32 224688999999999 6666543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.5e-07 Score=81.14 Aligned_cols=96 Identities=21% Similarity=0.177 Sum_probs=65.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..+..+++. +++|++||+++.... . + +
T Consensus 25 ~g~~VLDlG~G~G~~s~~la~~------~~~V~gvD~~~~~~~---~-------------------~------------v 64 (191)
T 3dou_A 25 KGDAVIEIGSSPGGWTQVLNSL------ARKIISIDLQEMEEI---A-------------------G------------V 64 (191)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT------CSEEEEEESSCCCCC---T-------------------T------------C
T ss_pred CCCEEEEEeecCCHHHHHHHHc------CCcEEEEeccccccC---C-------------------C------------e
Confidence 3579999999999999999873 789999999875220 0 1 4
Q ss_pred Eeeecchhhh-----hhh-cC----CcEeEEEEcCCCCCCc------------HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTK-----LCE-WG----VVGDLIEIDAGHDFNS------------AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~-----L~~-l~----~~fDLIfIDa~h~~~~------------v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+|..+. +.. ++ ++||+|+.|+...... ....++.+.++|+|||.+++--+..
T Consensus 65 ~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~ 142 (191)
T 3dou_A 65 RFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG 142 (191)
T ss_dssp EEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred EEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence 4444443321 111 11 4899999997532111 1345778899999999999866643
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=9e-08 Score=89.20 Aligned_cols=119 Identities=9% Similarity=-0.029 Sum_probs=77.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|..+..+++ . ++|++||+++ +...+++... ...... ..+.
T Consensus 83 g~~VLDlGcGtG~~s~~la~----~---~~V~gVD~s~-m~~~a~~~~~------------------~~~~~~---~~v~ 133 (276)
T 2wa2_A 83 KGTVVDLGCGRGSWSYYAAS----Q---PNVREVKAYT-LGTSGHEKPR------------------LVETFG---WNLI 133 (276)
T ss_dssp CEEEEEESCTTCHHHHHHHT----S---TTEEEEEEEC-CCCTTSCCCC------------------CCCCTT---GGGE
T ss_pred CCEEEEeccCCCHHHHHHHH----c---CCEEEEECch-hhhhhhhchh------------------hhhhcC---CCeE
Confidence 46899999999999999887 2 7899999998 5433322100 000000 0266
Q ss_pred ee--ecchhhhhhhcCCcEeEEEEcCCCCCCc-------HHHHHHHHHccCCCCe--EEEEEcCCCCCCchhHHHHHHHH
Q 041517 236 FS--SGSALTKLCEWGVVGDLIEIDAGHDFNS-------AWADINRAWRILRPGG--VIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 236 ~~--~gda~~~L~~l~~~fDLIfIDa~h~~~~-------v~~dl~~~~~lL~pGG--vIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+. .+|..+ ++ +++||+|+.|..+.... ....++.+.+.|+||| .+++..+. +..+.+.+.+..+
T Consensus 134 ~~~~~~D~~~-l~--~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~--~~~~~~~~~l~~l 208 (276)
T 2wa2_A 134 TFKSKVDVTK-ME--PFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN--PYSCDVLEALMKM 208 (276)
T ss_dssp EEECSCCGGG-CC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC--CCSHHHHHHHHHH
T ss_pred EEeccCcHhh-CC--CCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC--CCchhHHHHHHHH
Confidence 66 677655 33 47899999997632111 1135788899999999 99886655 5556455556655
Q ss_pred HHHc
Q 041517 305 AKIN 308 (327)
Q Consensus 305 ~~~~ 308 (327)
....
T Consensus 209 ~~~f 212 (276)
T 2wa2_A 209 QARF 212 (276)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 5443
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=5.6e-07 Score=84.10 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=83.6
Q ss_pred HHHHHhhcCCCEEEEEcCcc--hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 147 FGNLIDKVRPRVIIEVGSFL--GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 147 L~~L~~~~~p~~VLEIGt~~--G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+..|....+.+.|||||||. +.++..+++. ..++.+|++||.++.|++++++.. ..
T Consensus 70 v~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~---~~P~arVv~VD~sp~mLa~Ar~~l-------------------~~ 127 (277)
T 3giw_A 70 VAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQS---VAPESRVVYVDNDPIVLTLSQGLL-------------------AS 127 (277)
T ss_dssp HHHHHHTSCCCEEEEESCCSCCSSCHHHHHHH---HCTTCEEEEEECCHHHHHTTHHHH-------------------CC
T ss_pred HHHhccccCCCEEEEeCCCCCcccHHHHHHHH---HCCCCEEEEEeCChHHHHHHHHHh-------------------cc
Confidence 33343333567999999997 4455666653 356899999999999999887632 11
Q ss_pred hccCCcccceEeeecchhhh---hh--------hcCCcEeEEEEcCCCCCCc---HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTK---LC--------EWGVVGDLIEIDAGHDFNS---AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~---L~--------~l~~~fDLIfIDa~h~~~~---v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+ .++ +.+..+|..+. +. .++.+++++.+-.-|--.+ ....+..+.+.|+|||++++.+...
T Consensus 128 ~~-~~~---~~~v~aD~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 128 TP-EGR---TAYVEADMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp CS-SSE---EEEEECCTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred CC-CCc---EEEEEecccChhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 11 112 77777776553 11 1124444544444442223 4678999999999999999998775
Q ss_pred CCCchhHHHHHHHHHHHcCC
Q 041517 291 AADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~~~gl 310 (327)
+ ..+...+.+.+..+..|.
T Consensus 204 d-~~p~~~~~~~~~~~~~g~ 222 (277)
T 3giw_A 204 E-FAPQEVGRVAREYAARNM 222 (277)
T ss_dssp T-TSHHHHHHHHHHHHHTTC
T ss_pred C-CCHHHHHHHHHHHHhcCC
Confidence 3 223323333333344443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.55 E-value=3e-08 Score=90.68 Aligned_cols=151 Identities=11% Similarity=-0.036 Sum_probs=85.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh---------
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ--------- 225 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~--------- 225 (327)
+..+|||||||+|..++.++.. + -.+|+++|.++.|.+.+++........-+-.-.-.+..++...
T Consensus 55 ~g~~vLDiGCG~G~~~~~~~~~----~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 55 QGDTLIDIGSGPTIYQVLAACD----S-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp CEEEEEESSCTTCCGGGTTGGG----T-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCceEEEeCCCccHHHHHHHHh----h-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 4568999999999877665542 1 2479999999999998877532110000000000111111100
Q ss_pred ccCCcccceE-eeecchhhhhhh---cCCcEeEEEEcCCC-----CCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC---
Q 041517 226 NAIDSVLPVP-FSSGSALTKLCE---WGVVGDLIEIDAGH-----DFNSAWADINRAWRILRPGGVIFGHDYFTAAD--- 293 (327)
Q Consensus 226 g~~~~v~~V~-~~~gda~~~L~~---l~~~fDLIfIDa~h-----~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~--- 293 (327)
..... +. +..+|..+..+. ..++||+|+.-... ..+.....+.++.++|||||++++.+......
T Consensus 130 ~~~~~---i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~ 206 (263)
T 2a14_A 130 KLRAA---VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV 206 (263)
T ss_dssp HHHHH---EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE
T ss_pred HHHhh---hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcccee
Confidence 00001 33 556665542221 24689999975331 12344578899999999999999987543110
Q ss_pred ----chh---HHHHHHHHHHHcCCeEE
Q 041517 294 ----NRG---VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 294 ----~~G---V~~Av~~f~~~~gl~v~ 313 (327)
++. -.+-+...+...|+++.
T Consensus 207 g~~~~~~~~~~~~~l~~~l~~aGF~i~ 233 (263)
T 2a14_A 207 GKREFSCVALEKGEVEQAVLDAGFDIE 233 (263)
T ss_dssp TTEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred CCeEeeccccCHHHHHHHHHHCCCEEE
Confidence 010 23456666777888764
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.53 E-value=9e-07 Score=76.79 Aligned_cols=113 Identities=16% Similarity=-0.000 Sum_probs=77.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||+|||+|..++.+++. + ..+|+++|+++.+.+.++++ +. .+
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~----~-~~~v~~vD~~~~~~~~a~~~-------------------~~---------~~ 97 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLL----G-AESVTAFDIDPDAIETAKRN-------------------CG---------GV 97 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHT----T-BSEEEEEESCHHHHHHHHHH-------------------CT---------TS
T ss_pred CCCEEEEEeCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHh-------------------cC---------CC
Confidence 5679999999999999999873 2 45899999999988877652 21 16
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
.+..++..+ + +++||+|+.|..... ......++.+.+.+ |+++++.+. +....+...+...| +
T Consensus 98 ~~~~~d~~~-~---~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~-------~~~~~~~~~~~~~g-~ 163 (200)
T 1ne2_A 98 NFMVADVSE-I---SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNA-------KARDFLRREFSARG-D 163 (200)
T ss_dssp EEEECCGGG-C---CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEEEG-------GGHHHHHHHHHHHE-E
T ss_pred EEEECcHHH-C---CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEcC-------chHHHHHHHHHHCC-C
Confidence 777887766 2 368999999865211 11235678888887 676666533 22344555556666 5
Q ss_pred EEE
Q 041517 312 VQI 314 (327)
Q Consensus 312 v~~ 314 (327)
+..
T Consensus 164 ~~~ 166 (200)
T 1ne2_A 164 VFR 166 (200)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-07 Score=87.99 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=78.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||||||+|..+..+++ . ++|++||+++ +...+++... ...... ..+.
T Consensus 75 g~~VLDlGcGtG~~s~~la~----~---~~V~gvD~s~-m~~~a~~~~~------------------~~~~~~---~~v~ 125 (265)
T 2oxt_A 75 TGRVVDLGCGRGGWSYYAAS----R---PHVMDVRAYT-LGVGGHEVPR------------------ITESYG---WNIV 125 (265)
T ss_dssp CEEEEEESCTTSHHHHHHHT----S---TTEEEEEEEC-CCCSSCCCCC------------------CCCBTT---GGGE
T ss_pred CCEEEEeCcCCCHHHHHHHH----c---CcEEEEECch-hhhhhhhhhh------------------hhhccC---CCeE
Confidence 46899999999999998887 2 7899999998 5332221100 000000 0156
Q ss_pred ee--ecchhhhhhhcCCcEeEEEEcCCCCCCc-------HHHHHHHHHccCCCCe--EEEEEcCCCCCCchhHHHHHHHH
Q 041517 236 FS--SGSALTKLCEWGVVGDLIEIDAGHDFNS-------AWADINRAWRILRPGG--VIFGHDYFTAADNRGVRRAVNLF 304 (327)
Q Consensus 236 ~~--~gda~~~L~~l~~~fDLIfIDa~h~~~~-------v~~dl~~~~~lL~pGG--vIi~dD~~~~~~~~GV~~Av~~f 304 (327)
+. .+|..+ ++ +.+||+|+.|..+.... ....++.+.+.|+||| .+++..+. +..+.+.+.+..+
T Consensus 126 ~~~~~~D~~~-l~--~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~--~~~~~~~~~l~~l 200 (265)
T 2oxt_A 126 KFKSRVDIHT-LP--VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC--PYSVEVMERLSVM 200 (265)
T ss_dssp EEECSCCTTT-SC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC--TTSHHHHHHHHHH
T ss_pred EEecccCHhH-CC--CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC--CCChhHHHHHHHH
Confidence 66 666655 33 47899999997632111 1136788899999999 99987765 5556555666666
Q ss_pred HHHcC
Q 041517 305 AKING 309 (327)
Q Consensus 305 ~~~~g 309 (327)
....+
T Consensus 201 ~~~f~ 205 (265)
T 2oxt_A 201 QRKWG 205 (265)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 55543
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.7e-07 Score=86.34 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=82.7
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+..+|||+|||+|..++.+|+. +..++|+++|+++.+.+.|++ |+...|+.++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~----~~~~~v~g~Dis~~~l~~A~~-------------------n~~~~gl~~~-- 269 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALR----RYSGEIIGIEKYRKHLIGAEM-------------------NALAAGVLDK-- 269 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHT----TCCSCEEEEESCHHHHHHHHH-------------------HHHHTTCGGG--
T ss_pred cCCCCEEEEccCcCcHHHHHHHHh----CCCCeEEEEeCCHHHHHHHHH-------------------HHHHcCCCCc--
Confidence 345679999999999999999984 445699999999999988876 5555555444
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCC--------CCcH-HHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHD--------FNSA-WADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~--------~~~v-~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
+.+..+|+.+. +....+||+|+.|-... .... ...++.+.+.| +|+.+++. .. .+.+..
T Consensus 270 -i~~~~~D~~~~-~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i~-~~--------~~~~~~ 337 (373)
T 3tm4_A 270 -IKFIQGDATQL-SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFIT-TE--------KKAIEE 337 (373)
T ss_dssp -CEEEECCGGGG-GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEEE-SC--------HHHHHH
T ss_pred -eEEEECChhhC-CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEEE-CC--------HHHHHH
Confidence 88889998774 44357899999974311 1111 34456777777 44333332 11 233444
Q ss_pred HHHHcCCeEE
Q 041517 304 FAKINGLKVQ 313 (327)
Q Consensus 304 f~~~~gl~v~ 313 (327)
.....|+++.
T Consensus 338 ~~~~~G~~~~ 347 (373)
T 3tm4_A 338 AIAENGFEII 347 (373)
T ss_dssp HHHHTTEEEE
T ss_pred HHHHcCCEEE
Confidence 5566676653
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.50 E-value=6.2e-08 Score=89.68 Aligned_cols=115 Identities=10% Similarity=0.087 Sum_probs=72.7
Q ss_pred HHHHHHhhcCC--CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDKVRP--RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~~~p--~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.+...+...+. .+|||+|||.|..++.+|+. +++|++||.++.+.+++++..+ +..+|..
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~------g~~V~~vE~~~~~~~l~~~~l~------------~a~~~~~ 138 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLA------------RGYADAE 138 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHH------------HHHHCTT
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHH------------HHHhhHh
Confidence 34444444445 79999999999999999984 6789999999987776665321 0011111
Q ss_pred hhc-cCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCe
Q 041517 224 YQN-AIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGG 281 (327)
Q Consensus 224 ~~g-~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGG 281 (327)
..+ ..++ +++..+|+.+.++.+...||+||+|-......-...++..++.|++.+
T Consensus 139 ~~~~l~~~---i~~~~~D~~~~L~~~~~~fDvV~lDP~y~~~~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 139 IGGWLQER---LQLIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV 194 (258)
T ss_dssp THHHHHHH---EEEEESCHHHHSTTCSSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred hhhhhhcC---EEEEECCHHHHHHhCcccCCEEEEcCCCCCcccchHHHHHHHHHHHhh
Confidence 111 1122 889999999988766668999999975433221134455555555544
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-07 Score=88.97 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=72.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|. +.+.+.+++. .+ |
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~----~~~~~~~~~D~-~~~~~~a~~~--------------------------~~---v 254 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISK----YPLIKGINFDL-PQVIENAPPL--------------------------SG---I 254 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC--------------------------TT---E
T ss_pred CCCEEEEeCCCCcHHHHHHHHH----CCCCeEEEeCh-HHHHHhhhhc--------------------------CC---C
Confidence 3679999999999999999985 35789999999 6665544321 11 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHH--HHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAW--ADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~--~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..+|..+.+ +. ||+|++-. -|...+.. ..++.+.+.|+|||.+++.|...
T Consensus 255 ~~~~~d~~~~~---~~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~ 309 (372)
T 1fp1_D 255 EHVGGDMFASV---PQ-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 309 (372)
T ss_dssp EEEECCTTTCC---CC-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEEeCCcccCC---CC-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 78888766522 23 99999754 34444433 78999999999999999887654
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=82.80 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=92.6
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc-CCcc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA-IDSV 231 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~-~~~v 231 (327)
.-.|++||-||-|.|..+..+++ ..+..+|+.||+++...+.++++.. .+....+ +.+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk----~~~v~~v~~VEID~~Vv~~a~~~lp----------------~~~~~~~~dpR- 139 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTR----HKNVESITMVEIDAGVVSFCRQYLP----------------NHNAGSYDDPR- 139 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHT----CTTCCEEEEEESCHHHHHHHHHHCH----------------HHHTTGGGCTT-
T ss_pred CCCCCeEEEECCCchHHHHHHHH----cCCcceEEEEcCCHHHHHHHHhcCc----------------cccccccCCCc-
Confidence 34689999999999999988887 4557899999999999998887642 1111111 223
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+++..+|+.+.+..-.++||+|++|......+ ....++.+.+.|+|||+++..--..-..-.-+....+.+.+
T Consensus 140 --v~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~ 217 (294)
T 3o4f_A 140 --FKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSH 217 (294)
T ss_dssp --EEEEESCTTTTTSCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHH
T ss_pred --EEEEechHHHHHhhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHh
Confidence 88899999998877778999999997532211 23678999999999999998533221122334444444433
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=7.7e-07 Score=82.89 Aligned_cols=131 Identities=14% Similarity=-0.032 Sum_probs=75.4
Q ss_pred CCCEEEEEcCcchH----HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCcc-ccc-hHHHHHHHHHHhh--hc
Q 041517 155 RPRVIIEVGSFLGA----SALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMV-NGN-VLLYFQFLQNVIY--QN 226 (327)
Q Consensus 155 ~p~~VLEIGt~~G~----Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~-~g~-~~~~~~Fl~nv~~--~g 226 (327)
++.+|+++|||+|. .++.+++.+...+.+.+|+++|+++.+.+.|++....... .+- .....++...... .|
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 4555665422111146999999999999999875310000 000 0111111000000 00
Q ss_pred ---cCCcc-cceEeeecchhhh-hhhcCCcEeEEEEcCCCC-CCc--HHHHHHHHHccCCCCeEEEEE
Q 041517 227 ---AIDSV-LPVPFSSGSALTK-LCEWGVVGDLIEIDAGHD-FNS--AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 227 ---~~~~v-~~V~~~~gda~~~-L~~l~~~fDLIfIDa~h~-~~~--v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+.+ ..|.|..++..+. ++ ..++||+|+.-.-.- .++ ....++.+.+.|+|||++++-
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 00000 0288888886652 11 136899999854322 222 256789999999999999983
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.8e-08 Score=88.36 Aligned_cols=89 Identities=11% Similarity=0.097 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCC-------CChhhhhhhcccCccccchHHHHH
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFR-------GWPGFRDKFKEIPMVNGNVLLYFQ 217 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~-------~~~~~A~~~~~~~~~~g~~~~~~~ 217 (327)
.++...++..+..+|||+|||+|..++.+|+. +++|+++|.++ .+.+.+++
T Consensus 73 ~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~------g~~V~~vD~s~~~~~ll~~~l~~a~~---------------- 130 (258)
T 2r6z_A 73 ELIAKAVNHTAHPTVWDATAGLGRDSFVLASL------GLTVTAFEQHPAVACLLSDGIRRALL---------------- 130 (258)
T ss_dssp CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT------TCCEEEEECCHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh------CCEEEEEECChhhhHHHHHHHHHHHh----------------
Confidence 34555554444579999999999999999983 57999999999 66666654
Q ss_pred HHHHHhhhccCCcccceEeeecchhhhhhhcC---CcEeEEEEcCCC
Q 041517 218 FLQNVIYQNAIDSVLPVPFSSGSALTKLCEWG---VVGDLIEIDAGH 261 (327)
Q Consensus 218 Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~---~~fDLIfIDa~h 261 (327)
|....+..++ |.+..+++.+.++.+. .+||+|++|...
T Consensus 131 ---n~~~~~~~~r---i~~~~~d~~~~l~~~~~~~~~fD~V~~dP~~ 171 (258)
T 2r6z_A 131 ---NPETQDTAAR---INLHFGNAAEQMPALVKTQGKPDIVYLDPMY 171 (258)
T ss_dssp ---SHHHHHHHTT---EEEEESCHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred ---HHHhhCCccC---eEEEECCHHHHHHhhhccCCCccEEEECCCC
Confidence 2322233233 8899999988766543 689999999653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-07 Score=88.14 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=73.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|. +.+.+.+++. .. +
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~--------------------------~~---v 233 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICET----FPKLKCIVFDR-PQVVENLSGS--------------------------NN---L 233 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCB--------------------------TT---E
T ss_pred cCceEEEeCCCccHHHHHHHHH----CCCCeEEEeeC-HHHHhhcccC--------------------------CC---c
Confidence 4689999999999999999985 34779999999 7766544321 11 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCCCcHH--HHHHHHHccCCC---CeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDFNSAW--ADINRAWRILRP---GGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~v~--~dl~~~~~lL~p---GGvIi~dD~~~ 290 (327)
++..+|..+.++ .||+|++-. -|...+.. ..++.+.+.|+| ||.+++.|...
T Consensus 234 ~~~~~d~~~~~p----~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 234 TYVGGDMFTSIP----NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp EEEECCTTTCCC----CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred EEEeccccCCCC----CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 777787655322 399999754 35444433 789999999999 99998888765
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6e-07 Score=86.32 Aligned_cols=97 Identities=19% Similarity=0.158 Sum_probs=71.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||||||+|..+..+++. .++.+++++|. +.+.+.+++. .+ |+
T Consensus 204 ~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~--------------------------~~---v~ 249 (368)
T 3reo_A 204 LTTIVDVGGGTGAVASMIVAK----YPSINAINFDL-PHVIQDAPAF--------------------------SG---VE 249 (368)
T ss_dssp CSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC--------------------------TT---EE
T ss_pred CCEEEEeCCCcCHHHHHHHHh----CCCCEEEEEeh-HHHHHhhhhc--------------------------CC---CE
Confidence 579999999999999999985 35789999999 6555443321 12 78
Q ss_pred eeecchhhhhhhcCCcEeEEEEcC-CCCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDA-GHDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..+|..+.++ .. |+|++-. -|.+.+ ....|+++.+.|+|||.|++.|...
T Consensus 250 ~~~~d~~~~~p---~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 303 (368)
T 3reo_A 250 HLGGDMFDGVP---KG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYIL 303 (368)
T ss_dssp EEECCTTTCCC---CC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCC
T ss_pred EEecCCCCCCC---CC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 88888766333 22 9998754 453433 3467899999999999999888775
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=6.3e-07 Score=84.56 Aligned_cols=115 Identities=12% Similarity=0.021 Sum_probs=73.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeC----CCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDD----FRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~----~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
..+|||||||+|..+..+|+. ++|++||. .+++.+.... + .. +. +.
T Consensus 83 g~~VLDlGcG~G~~s~~la~~-------~~V~gvD~~~~~~~~~~~~~~~--~----------------~~---~~-~~- 132 (305)
T 2p41_A 83 EGKVVDLGCGRGGWSYYCGGL-------KNVREVKGLTKGGPGHEEPIPM--S----------------TY---GW-NL- 132 (305)
T ss_dssp CEEEEEETCTTSHHHHHHHTS-------TTEEEEEEECCCSTTSCCCCCC--C----------------ST---TG-GG-
T ss_pred CCEEEEEcCCCCHHHHHHHhc-------CCEEEEeccccCchhHHHHHHh--h----------------hc---CC-CC-
Confidence 369999999999999999872 68999999 4443321110 0 00 00 11
Q ss_pred cceEeeec-chhhhhhhcCCcEeEEEEcCCCCC-Cc------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 232 LPVPFSSG-SALTKLCEWGVVGDLIEIDAGHDF-NS------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 232 ~~V~~~~g-da~~~L~~l~~~fDLIfIDa~h~~-~~------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
|.+..+ |..+. + ..+||+|+.|+.... .. ....|+.+.+.|+|||.+++..+. +..+.+.+.+..
T Consensus 133 --v~~~~~~D~~~l-~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~--~~~~~~~~~l~~ 205 (305)
T 2p41_A 133 --VRLQSGVDVFFI-P--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN--PYMSSVIEKMEA 205 (305)
T ss_dssp --EEEECSCCTTTS-C--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC--CCSHHHHHHHHH
T ss_pred --eEEEeccccccC-C--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCC--CCCchHHHHHHH
Confidence 677777 65442 2 368999999976421 11 124678888999999999985443 333555566665
Q ss_pred HHHH
Q 041517 304 FAKI 307 (327)
Q Consensus 304 f~~~ 307 (327)
+...
T Consensus 206 l~~~ 209 (305)
T 2p41_A 206 LQRK 209 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=9.2e-07 Score=87.07 Aligned_cols=131 Identities=10% Similarity=0.085 Sum_probs=85.6
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+++.. +..+|||+|||+|..++.+|+. ..+|+++|.++.+.+.|++ |
T Consensus 273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~------~~~V~gvD~s~~al~~A~~-------------------n 327 (433)
T 1uwv_A 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQ-------------------N 327 (433)
T ss_dssp HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh------CCEEEEEeCCHHHHHHHHH-------------------H
Confidence 3455544433 3579999999999999999973 6899999999999988876 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhh---cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHH
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCE---WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVR 298 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~ 298 (327)
+...+.. + +.+..+++.+.++. .+..||+|++|-.-.. ....++.+ ..++|++++.+.- .. .-..
T Consensus 328 ~~~~~~~-~---v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g--~~~~~~~l-~~~~p~~ivyvsc-~p----~tla 395 (433)
T 1uwv_A 328 ARLNGLQ-N---VTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG--AAGVMQQI-IKLEPIRIVYVSC-NP----ATLA 395 (433)
T ss_dssp HHHTTCC-S---EEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC--CHHHHHHH-HHHCCSEEEEEES-CH----HHHH
T ss_pred HHHcCCC-c---eEEEECCHHHHhhhhhhhcCCCCEEEECCCCcc--HHHHHHHH-HhcCCCeEEEEEC-Ch----HHHH
Confidence 3333332 2 88899988775443 2468999999854322 22334433 3478999887632 21 1233
Q ss_pred HHHHHHHHHcCCeEE
Q 041517 299 RAVNLFAKINGLKVQ 313 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~ 313 (327)
+-...+. +.|+++.
T Consensus 396 rd~~~l~-~~Gy~~~ 409 (433)
T 1uwv_A 396 RDSEALL-KAGYTIA 409 (433)
T ss_dssp HHHHHHH-HTTCEEE
T ss_pred hhHHHHH-HCCcEEE
Confidence 4444443 3466653
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=3.4e-06 Score=79.21 Aligned_cols=92 Identities=16% Similarity=-0.089 Sum_probs=63.8
Q ss_pred CCEEEEEcCcc------hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC
Q 041517 156 PRVIIEVGSFL------GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229 (327)
Q Consensus 156 p~~VLEIGt~~------G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~ 229 (327)
..+|||+|||+ |. ..+++. ++++++|+++|+++. . . +
T Consensus 64 g~~VLDLGcGsg~~~GpGs--~~~a~~---~~~~~~V~gvDis~~-v----~-------------------~-------- 106 (290)
T 2xyq_A 64 NMRVIHFGAGSDKGVAPGT--AVLRQW---LPTGTLLVDSDLNDF-V----S-------------------D-------- 106 (290)
T ss_dssp TCEEEEESCCCTTSBCHHH--HHHHHH---SCTTCEEEEEESSCC-B----C-------------------S--------
T ss_pred CCEEEEeCCCCCCCCCcHH--HHHHHH---cCCCCEEEEEECCCC-C----C-------------------C--------
Confidence 46999999955 65 444543 566799999999887 1 0 1
Q ss_pred cccceEe-eecchhhhhhhcCCcEeEEEEcCCCCC------------CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 230 SVLPVPF-SSGSALTKLCEWGVVGDLIEIDAGHDF------------NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 230 ~v~~V~~-~~gda~~~L~~l~~~fDLIfIDa~h~~------------~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.+ ..+|..+. + ..++||+|+.|..... ......++++.+.|+|||.+++..+..
T Consensus 107 ----v~~~i~gD~~~~-~-~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 107 ----ADSTLIGDCATV-H-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp ----SSEEEESCGGGC-C-CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred ----CEEEEECccccC-C-ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 445 66766542 1 2367999999854321 112367899999999999999977654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=8.2e-07 Score=85.31 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=72.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|. +.+.+.+++. ++ |
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~--------------------------~~---v 246 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAH----YPTIKGVNFDL-PHVISEAPQF--------------------------PG---V 246 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHTTCCCC--------------------------TT---E
T ss_pred CCCEEEEeCCCCCHHHHHHHHH----CCCCeEEEecC-HHHHHhhhhc--------------------------CC---e
Confidence 3579999999999999999985 35789999999 5554433220 12 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..+|..+.++ .. |+|++-. -|.+ +.....|+.+.+.|+|||.+++.|...
T Consensus 247 ~~~~~D~~~~~p---~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~ 301 (364)
T 3p9c_A 247 THVGGDMFKEVP---SG-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCIL 301 (364)
T ss_dssp EEEECCTTTCCC---CC-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred EEEeCCcCCCCC---CC-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 888888766333 22 9998754 4544 334567999999999999999888775
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.32 E-value=9.9e-07 Score=83.83 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=75.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccC-CCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQL-GLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l-~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+|||+|||+|..++.+++.++.. +...+++++|+++.+.+.|+. |+...|. .
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~-------------------n~~~~g~-----~ 185 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALV-------------------GADLQRQ-----K 185 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHH-------------------HHHHHTC-----C
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHH-------------------HHHhCCC-----C
Confidence 45799999999999999999864321 113799999999998888766 3333333 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCC-------------------cHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFN-------------------SAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~-------------------~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.+..+|+.+.. ...+||+|+.+....+. .....++.+.++|+|||++++.-
T Consensus 186 ~~i~~~D~l~~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 186 MTLLHQDGLANL--LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CEEEESCTTSCC--CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceEEECCCCCcc--ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 677788876532 24789999987542110 11246889999999999877654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=81.60 Aligned_cols=75 Identities=13% Similarity=0.068 Sum_probs=55.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. +.+|++||+++.+.+.+++. +...+..++ +
T Consensus 28 ~~~~VLDiG~G~G~lt~~L~~~------~~~v~~vD~~~~~~~~a~~~-------------------~~~~~~~~~---v 79 (285)
T 1zq9_A 28 PTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKR-------------------VQGTPVASK---L 79 (285)
T ss_dssp TTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHH-------------------HTTSTTGGG---E
T ss_pred CCCEEEEEcCcccHHHHHHHhh------CCEEEEEECCHHHHHHHHHH-------------------HHhcCCCCc---e
Confidence 4579999999999999999985 57999999999988877653 221121122 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG 260 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~ 260 (327)
.+..+|+.+. .+ ..||+|+.+..
T Consensus 80 ~~~~~D~~~~--~~-~~fD~vv~nlp 102 (285)
T 1zq9_A 80 QVLVGDVLKT--DL-PFFDTCVANLP 102 (285)
T ss_dssp EEEESCTTTS--CC-CCCSEEEEECC
T ss_pred EEEEcceecc--cc-hhhcEEEEecC
Confidence 8888887653 12 37899998644
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.6e-06 Score=78.48 Aligned_cols=96 Identities=11% Similarity=0.141 Sum_probs=65.6
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+++.. +..+|||||||+|+.|..+++. ..+|++||+++.+.+.+++.
T Consensus 37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~------~~~V~aVEid~~li~~a~~~------------------- 91 (295)
T 3gru_A 37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN------AKKVYVIEIDKSLEPYANKL------------------- 91 (295)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCGGGHHHHHHH-------------------
T ss_pred HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHHH-------------------
Confidence 3445554443 3579999999999999999985 68999999999999877652
Q ss_pred HhhhccCCcccceEeeecchhhh-hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTK-LCEWGVVGDLIEIDAGHDFNSAWADINRAWR 275 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~-L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~ 275 (327)
+... ++ +.+..+|+.+. ++ ..+||.|+.+ .+|+.....+..+++
T Consensus 92 ~~~~---~~---v~vi~gD~l~~~~~--~~~fD~Iv~N--lPy~is~pil~~lL~ 136 (295)
T 3gru_A 92 KELY---NN---IEIIWGDALKVDLN--KLDFNKVVAN--LPYQISSPITFKLIK 136 (295)
T ss_dssp HHHC---SS---EEEEESCTTTSCGG--GSCCSEEEEE--CCGGGHHHHHHHHHH
T ss_pred hccC---CC---eEEEECchhhCCcc--cCCccEEEEe--CcccccHHHHHHHHh
Confidence 2211 12 88889988763 22 2469999954 445443344444443
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-06 Score=80.22 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=90.2
Q ss_pred HHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.|+..+.... .|.+|||||||+|-.++.++. ..+..+++++|+++.+.+++++ |+.
T Consensus 121 ~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~----~~p~a~y~a~DId~~~le~a~~-------------------~l~ 177 (281)
T 3lcv_B 121 EFYRELFRHLPRPNTLRDLACGLNPLAAPWMG----LPAETVYIASDIDARLVGFVDE-------------------ALT 177 (281)
T ss_dssp HHHHHHGGGSCCCSEEEETTCTTGGGCCTTTT----CCTTCEEEEEESBHHHHHHHHH-------------------HHH
T ss_pred HHHHHHHhccCCCceeeeeccCccHHHHHHHh----hCCCCEEEEEeCCHHHHHHHHH-------------------HHH
Confidence 3444444443 489999999999999998886 4579999999999999998876 444
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcCCC-CCCchh---
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDYFT-AADNRG--- 296 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~-~~~~~G--- 296 (327)
..|.. .++...|-.. ....+++|++++-=. |-- +.--..+ .++..|++||++|--+... ....+|
T Consensus 178 ~~g~~-----~~~~v~D~~~--~~p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs~gm~~ 249 (281)
T 3lcv_B 178 RLNVP-----HRTNVADLLE--DRLDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRSKGMFQ 249 (281)
T ss_dssp HTTCC-----EEEEECCTTT--SCCCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC-------CHHH
T ss_pred hcCCC-----ceEEEeeecc--cCCCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCCcchhh
Confidence 43432 3444444332 223588999986322 100 0001234 7888999999999888832 123344
Q ss_pred -HHHHHHHHHHHcCCeEEE
Q 041517 297 -VRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 297 -V~~Av~~f~~~~gl~v~~ 314 (327)
..+-++..+.+.|+.++.
T Consensus 250 ~Y~~~~e~~~~~~g~~~~~ 268 (281)
T 3lcv_B 250 NYSQSFESQARERSCRIQR 268 (281)
T ss_dssp HHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHhcCCceee
Confidence 556667777778887653
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.1e-06 Score=81.70 Aligned_cols=95 Identities=19% Similarity=0.091 Sum_probs=67.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+++. .++..+++++|+++.+.+.|. + +
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~---~~~~~~i~gvDi~~~~~~~a~-----------------------------~---~ 83 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREA---HGTAYRFVGVEIDPKALDLPP-----------------------------W---A 83 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHH---HCSCSEEEEEESCTTTCCCCT-----------------------------T---E
T ss_pred CCCEEEECCCCChHHHHHHHHH---hCCCCeEEEEECCHHHHHhCC-----------------------------C---C
Confidence 4579999999999999999985 334689999999998876441 1 5
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCC----C--------CCcH------------------HHHHHHHHccCCCCeEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGH----D--------FNSA------------------WADINRAWRILRPGGVIF 284 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h----~--------~~~v------------------~~dl~~~~~lL~pGGvIi 284 (327)
.+..+|..+.. ..+.||+|+.+--. . .... ...++.+.++|+|||+++
T Consensus 84 ~~~~~D~~~~~--~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~ 161 (421)
T 2ih2_A 84 EGILADFLLWE--PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLV 161 (421)
T ss_dssp EEEESCGGGCC--CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEE
T ss_pred cEEeCChhhcC--ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEE
Confidence 66677765532 23689999985110 0 0111 134788999999999766
Q ss_pred EE
Q 041517 285 GH 286 (327)
Q Consensus 285 ~d 286 (327)
+-
T Consensus 162 ~i 163 (421)
T 2ih2_A 162 FV 163 (421)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-06 Score=83.15 Aligned_cols=98 Identities=13% Similarity=0.151 Sum_probs=72.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. .++.+++++|. +.+.+.+++. .. |
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~--------------------------~~---v 238 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEI----FPHLKCTVFDQ-PQVVGNLTGN--------------------------EN---L 238 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTSEEEEEEC-HHHHSSCCCC--------------------------SS---E
T ss_pred CCCEEEEECCCcCHHHHHHHHH----CCCCeEEEecc-HHHHhhcccC--------------------------CC---c
Confidence 5689999999999999999985 35779999998 5554433220 11 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCCCc--HHHHHHHHHccCCC---CeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDFNS--AWADINRAWRILRP---GGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~~--v~~dl~~~~~lL~p---GGvIi~dD~~~ 290 (327)
++..+|..+.+ + .||+|++-. -|.+.+ ....++.+.+.|+| ||.+++.|...
T Consensus 239 ~~~~~d~~~~~---~-~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 239 NFVGGDMFKSI---P-SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp EEEECCTTTCC---C-CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred EEEeCccCCCC---C-CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 77778765522 2 499999754 354544 33789999999999 99888877764
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.5e-06 Score=88.07 Aligned_cols=105 Identities=13% Similarity=0.037 Sum_probs=78.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|++||||+|-.....+++.+..+...+||+||-++ ++..+++ .+...++.++ |.
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~-------------------~v~~N~~~dk---Vt 414 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLE-------------------NWQFEEWGSQ---VT 414 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHH-------------------HHHHHTTGGG---EE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHH-------------------HHHhccCCCe---EE
Confidence 35799999999998666666544444455899999986 5555554 3334456666 99
Q ss_pred eeecchhhhhhhcCCcEeEEEEc---CCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEWGVVGDLIEID---AGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfID---a~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+++|+..+. .+++++|+|+.. ....++.+...+....+.|+|||+++=
T Consensus 415 VI~gd~eev--~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP 465 (637)
T 4gqb_A 415 VVSSDMREW--VAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP 465 (637)
T ss_dssp EEESCTTTC--CCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred EEeCcceec--cCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence 999998884 456899999954 445567788888888999999999863
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.5e-07 Score=86.84 Aligned_cols=74 Identities=16% Similarity=0.100 Sum_probs=59.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh--ccCCcccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ--NAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~--g~~~~v~~ 233 (327)
..+|||+|||+|..++.+|+. +.+|++||.++.+.+.+++ |+... |. ++
T Consensus 94 g~~VLDLgcG~G~~al~LA~~------g~~V~~VD~s~~~l~~Ar~-------------------N~~~~~~gl-~~--- 144 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK------ASQGIYIERNDETAVAARH-------------------NIPLLLNEG-KD--- 144 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT------CSEEEEEESCHHHHHHHHH-------------------HHHHHSCTT-CE---
T ss_pred CCEEEEeCCCchHHHHHHHhc------CCEEEEEECCHHHHHHHHH-------------------hHHHhccCC-Cc---
Confidence 689999999999999999874 6799999999999998877 44333 33 23
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEc
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEID 258 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfID 258 (327)
+.+..+|+.+.++.. +.+||+||+|
T Consensus 145 i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 145 VNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp EEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred EEEEECcHHHhhhhccCCCceEEEEC
Confidence 889999998866543 3589999999
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.6e-06 Score=80.44 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=75.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||||.|..++.+++. .|+.+++.+|. +.+.+.+++.. .. +..++ |
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~----~p~~~~~~~dl-p~v~~~a~~~~-------------------~~-~~~~r---v 230 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSL----YPGCKITVFDI-PEVVWTAKQHF-------------------SF-QEEEQ---I 230 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHH----CSSCEEEEEEC-HHHHHHHHHHS-------------------CC---CCS---E
T ss_pred cCCeEEeeCCCCCHHHHHHHHh----CCCceeEeccC-HHHHHHHHHhh-------------------hh-cccCc---e
Confidence 4579999999999999999985 45789999997 55666555432 11 12345 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEc-CCCCCCc--HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEID-AGHDFNS--AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfID-a~h~~~~--v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..+|..+. ....+|+|++- .-|.+++ ....|+.+.+.|+|||.|++.|...
T Consensus 231 ~~~~gD~~~~---~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~ 286 (353)
T 4a6d_A 231 DFQEGDFFKD---PLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLL 286 (353)
T ss_dssp EEEESCTTTS---CCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCC
T ss_pred eeecCccccC---CCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeee
Confidence 8988886542 22457988864 4565544 3566899999999999888877765
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.7e-06 Score=79.75 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=51.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. +.+|++||+++.+.+.+++. +...+. ++ +
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~------~~~v~~vDi~~~~~~~a~~~-------------------~~~~~~-~~---v 92 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPL------AKKVITIDIDSRMISEVKKR-------------------CLYEGY-NN---L 92 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTT------SSEEEEECSCHHHHHHHHHH-------------------HHHTTC-CC---E
T ss_pred CcCEEEEEcCcCcHHHHHHHhc------CCEEEEEECCHHHHHHHHHH-------------------HHHcCC-Cc---e
Confidence 4579999999999999999873 57999999999998877652 222222 22 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG 260 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~ 260 (327)
.+..+|+.+. + ...||+|+.|..
T Consensus 93 ~~~~~D~~~~-~--~~~~D~Vv~n~p 115 (299)
T 2h1r_A 93 EVYEGDAIKT-V--FPKFDVCTANIP 115 (299)
T ss_dssp EC----CCSS-C--CCCCSEEEEECC
T ss_pred EEEECchhhC-C--cccCCEEEEcCC
Confidence 7777776552 1 247999998754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.4e-06 Score=77.68 Aligned_cols=79 Identities=18% Similarity=0.077 Sum_probs=59.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||+|||+|..++.+++. .+ +++|++||.++.+.+.++++ +...+ ++ +
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~---~~-~~~VigvD~d~~al~~A~~~-------------------~~~~g--~~---v 77 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEH---CP-GCRIIGIDVDSEVLRIAEEK-------------------LKEFS--DR---V 77 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHH---CT-TCEEEEEESCHHHHHHHHHH-------------------TGGGT--TT---E
T ss_pred CCCEEEEEeCCcCHHHHHHHHH---CC-CCEEEEEECCHHHHHHHHHH-------------------HHhcC--Cc---E
Confidence 4579999999999999999985 34 78999999999999888763 22222 23 7
Q ss_pred Eeeecchhhh---hhhcC-CcEeEEEEcCCC
Q 041517 235 PFSSGSALTK---LCEWG-VVGDLIEIDAGH 261 (327)
Q Consensus 235 ~~~~gda~~~---L~~l~-~~fDLIfIDa~h 261 (327)
.+..++..+. +...+ .+||.|++|...
T Consensus 78 ~~v~~d~~~l~~~l~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 78 SLFKVSYREADFLLKTLGIEKVDGILMDLGV 108 (301)
T ss_dssp EEEECCGGGHHHHHHHTTCSCEEEEEEECSC
T ss_pred EEEECCHHHHHHHHHhcCCCCCCEEEEcCcc
Confidence 8888886653 22223 589999999754
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.9e-06 Score=84.60 Aligned_cols=101 Identities=15% Similarity=0.056 Sum_probs=69.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+|.+|||||||.|..+..||+. +.+|++||.++.++++|+... ...| .+.|
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~------ga~V~giD~~~~~i~~a~~~a-------------------~~~~----~~~~ 116 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK------GATIVGIDFQQENINVCRALA-------------------EENP----DFAA 116 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH-------------------HTST----TSEE
T ss_pred CCCeEEEECCCCcHHHHHHHhC------CCEEEEECCCHHHHHHHHHHH-------------------HhcC----CCce
Confidence 5789999999999999999994 789999999999998887532 1111 1238
Q ss_pred Eeeecchhhhhhhc-CCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEE
Q 041517 235 PFSSGSALTKLCEW-GVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIF 284 (327)
Q Consensus 235 ~~~~gda~~~L~~l-~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi 284 (327)
++..+++.+..... ++.||+|..=.-... +.....+..++..|+++|...
T Consensus 117 ~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~ 170 (569)
T 4azs_A 117 EFRVGRIEEVIAALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAV 170 (569)
T ss_dssp EEEECCHHHHHHHCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred EEEECCHHHHhhhccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhcccccee
Confidence 88899988765443 578999986433211 011223445666777776433
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.5e-05 Score=73.66 Aligned_cols=146 Identities=14% Similarity=0.033 Sum_probs=93.9
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++......+|||++++-|.=|+.||+. ..+++|+++|+++.-....++ |+...
T Consensus 139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~----~~~~~l~A~D~~~~R~~~l~~-------------------~l~r~ 195 (359)
T 4fzv_A 139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQT----GCCRNLAANDLSPSRIARLQK-------------------ILHSY 195 (359)
T ss_dssp HHHHHHCCCTTEEEEESSCTTCHHHHHHHHT----TCEEEEEEECSCHHHHHHHHH-------------------HHHHH
T ss_pred HHHHHhCCCCCCEEEEecCCccHHHHHHHHh----cCCCcEEEEcCCHHHHHHHHH-------------------HHHHh
Confidence 3344444444569999999999999999984 457899999998654332222 34333
Q ss_pred ccCCc--ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC---------c----------------HHHHHHHHHccCC
Q 041517 226 NAIDS--VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN---------S----------------AWADINRAWRILR 278 (327)
Q Consensus 226 g~~~~--v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~---------~----------------v~~dl~~~~~lL~ 278 (327)
+.... ...+.....|+...-...++.||.|.+|+--+.. . -.+-|+.++++|+
T Consensus 196 ~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk 275 (359)
T 4fzv_A 196 VPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK 275 (359)
T ss_dssp SCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE
T ss_pred hhhhhccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 32110 0127777777766433346789999999653321 0 1244678899999
Q ss_pred CCeEEEEEcCCCCC-Cchh-HHHHHHHHHHHcCCeEEE
Q 041517 279 PGGVIFGHDYFTAA-DNRG-VRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 279 pGGvIi~dD~~~~~-~~~G-V~~Av~~f~~~~gl~v~~ 314 (327)
|||+||-..+-..+ +..+ |..+++.+.+...+.+..
T Consensus 276 pGG~LVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~ 313 (359)
T 4fzv_A 276 PGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQV 313 (359)
T ss_dssp EEEEEEEEESCCCTTTTHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCcEEEEEeCCCchhhCHHHHHHHHHhCCCCccccccc
Confidence 99999988887643 2233 566666665555665554
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-07 Score=85.07 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=36.3
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+..+|||||||+|..+..+++. +.+|++||+++.+.+.+++
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~------~~~v~~id~~~~~~~~a~~ 69 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSE 69 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSC
T ss_pred CCCEEEEEeCCCCHHHHHHHHh------CCeEEEEECCHHHHHHHHH
Confidence 4568999999999999999985 4899999999999987765
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.03 E-value=6e-06 Score=81.40 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=77.0
Q ss_pred HHHHHHhhcC---CCEEEEEcCcchHHHHHHHHHhccCC---------CCcEEEEEeCCCCChhhhhhhcccCccccchH
Q 041517 146 VFGNLIDKVR---PRVIIEVGSFLGASALHMANLTRQLG---------LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVL 213 (327)
Q Consensus 146 lL~~L~~~~~---p~~VLEIGt~~G~Sal~lA~a~r~l~---------~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~ 213 (327)
+...+++... ..+|+|.|||+|...+.+++.++... ...+++++|+++.+...|+.
T Consensus 159 v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~------------ 226 (445)
T 2okc_A 159 LIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM------------ 226 (445)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH------------
T ss_pred HHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHH------------
Confidence 4444444433 46899999999999999988654221 24679999999988887765
Q ss_pred HHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC------------------CcHHHHHHHHHc
Q 041517 214 LYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF------------------NSAWADINRAWR 275 (327)
Q Consensus 214 ~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~------------------~~v~~dl~~~~~ 275 (327)
|+...|.... .+.+..+|+.... ...+||+|+.+-.... ......++.+++
T Consensus 227 -------nl~l~g~~~~--~~~i~~gD~l~~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~ 295 (445)
T 2okc_A 227 -------NLYLHGIGTD--RSPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMML 295 (445)
T ss_dssp -------HHHHTTCCSS--CCSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHH
T ss_pred -------HHHHhCCCcC--CCCEeeCCCCCCc--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHH
Confidence 4433343210 1566778776532 2348999998632100 012467899999
Q ss_pred cCCCCeEEEE
Q 041517 276 ILRPGGVIFG 285 (327)
Q Consensus 276 lL~pGGvIi~ 285 (327)
+|+|||.+++
T Consensus 296 ~Lk~gG~~a~ 305 (445)
T 2okc_A 296 MLKTGGRAAV 305 (445)
T ss_dssp HEEEEEEEEE
T ss_pred HhccCCEEEE
Confidence 9999997765
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-05 Score=71.53 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=41.3
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.++..+++.. +..+|||||||+|..+..+++. ..+|++||.++.+.+.+++
T Consensus 17 ~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~------~~~v~~vD~~~~~~~~a~~ 70 (244)
T 1qam_A 17 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTEN 70 (244)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHc------CCeEEEEECCHHHHHHHHH
Confidence 4555555544 3578999999999999999985 4899999999999887765
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=7.6e-06 Score=75.24 Aligned_cols=124 Identities=13% Similarity=0.100 Sum_probs=74.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.|...+.....|.+|||||||.|-.++.++ +..+++++|+++++.++++++ +..
T Consensus 95 ~fY~~i~~~~~p~~VLDlGCG~gpLal~~~-------~~~~y~a~DId~~~i~~ar~~-------------------~~~ 148 (253)
T 3frh_A 95 TLYDFIFSAETPRRVLDIACGLNPLALYER-------GIASVWGCDIHQGLGDVITPF-------------------ARE 148 (253)
T ss_dssp HHHHHHTSSCCCSEEEEETCTTTHHHHHHT-------TCSEEEEEESBHHHHHHHHHH-------------------HHH
T ss_pred HHHHHHhcCCCCCeEEEecCCccHHHHHhc-------cCCeEEEEeCCHHHHHHHHHH-------------------HHh
Confidence 344444544468999999999998888766 389999999999999988763 222
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEE-cCCCCCCc-HHHHHHHHHccCCCCeEEEEEcCCC-CCCchhHHHHH
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEI-DAGHDFNS-AWADINRAWRILRPGGVIFGHDYFT-AADNRGVRRAV 301 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~-v~~dl~~~~~lL~pGGvIi~dD~~~-~~~~~GV~~Av 301 (327)
.|. +..+...|.... ...+++|+|++ +.-|--+. -......++..|++++++|--+... +..-+|+.+..
T Consensus 149 ~g~-----~~~~~v~D~~~~--~~~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~Gr~~gm~~~Y 221 (253)
T 3frh_A 149 KDW-----DFTFALQDVLCA--PPAEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLGGRGKGMEANY 221 (253)
T ss_dssp TTC-----EEEEEECCTTTS--CCCCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC-----------CH
T ss_pred cCC-----CceEEEeecccC--CCCCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcChHHhcCCCcchhhHH
Confidence 221 255656654442 23579999965 33221100 0012237777899999999877332 23334544333
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.98 E-value=7.5e-06 Score=75.33 Aligned_cols=87 Identities=11% Similarity=0.071 Sum_probs=59.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..|..+++. ..+|++||.++.+.+.+++. +.. .++ +
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~------~~~V~avEid~~~~~~~~~~-------------------~~~---~~~---v 77 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTE------CDNLALVEIDRDLVAFLQKK-------------------YNQ---QKN---I 77 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTT------SSEEEEEECCHHHHHHHHHH-------------------HTT---CTT---E
T ss_pred CcCEEEEEcccccHHHHHHHHh------CCEEEEEECCHHHHHHHHHH-------------------Hhh---CCC---c
Confidence 4578999999999999999974 47999999999998877653 211 112 7
Q ss_pred Eeeecchhhh-hhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHc
Q 041517 235 PFSSGSALTK-LCEW--GVVGDLIEIDAGHDFNSAWADINRAWR 275 (327)
Q Consensus 235 ~~~~gda~~~-L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~ 275 (327)
.+..+|+.+. ++.+ +.+||+| ++.+|+-....+..++.
T Consensus 78 ~~i~~D~~~~~~~~~~~~~~~~vv---~NlPY~is~~il~~ll~ 118 (255)
T 3tqs_A 78 TIYQNDALQFDFSSVKTDKPLRVV---GNLPYNISTPLLFHLFS 118 (255)
T ss_dssp EEEESCTTTCCGGGSCCSSCEEEE---EECCHHHHHHHHHHHHH
T ss_pred EEEEcchHhCCHHHhccCCCeEEE---ecCCcccCHHHHHHHHh
Confidence 8888888774 3443 3578843 33455443344444444
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=1.8e-05 Score=76.90 Aligned_cols=111 Identities=13% Similarity=0.040 Sum_probs=78.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc-cCCcccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN-AIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g-~~~~v~~ 233 (327)
.|++||-||-|.|..+..+.+ .+ ..+|+.||+++...+.++++.... ..-.... ..++
T Consensus 205 ~pkrVLIIGgGdG~~~revlk----h~-~~~V~~VEIDp~VVe~ar~yfp~~-------------~~~~~d~pr~~r--- 263 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVK----LK-PKMVTMVEIDQMVIDGCKKYMRKT-------------CGDVLDNLKGDC--- 263 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHT----TC-CSEEEEEESCHHHHHHHHHHCCC-----------------CCSSSEETT---
T ss_pred CCCeEEEECCCcHHHHHHHHh----cC-CceeEEEccCHHHHHHHHhhchhh-------------hhhhhccccccc---
Confidence 479999999999999888776 34 479999999999999998864200 0000000 1122
Q ss_pred eEeeecchhhhhhh---cCCcEeEEEEcCCCCC-------Cc----HHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCE---WGVVGDLIEIDAGHDF-------NS----AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~-------~~----v~~dl~~~~~lL~pGGvIi~d 286 (327)
+++..+|+.+.+.. -+.+||+|++|..-.. .. ....++.+.+.|+|||+++..
T Consensus 264 v~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 264 YQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp EEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred eeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 78889999988754 2568999999963211 01 234578889999999999975
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00012 Score=69.21 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=83.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEE--EEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQI--LCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V--~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.-+|+|+|-|+|++++...+.+....+..++ +++|-.+- . .+..... ....+.+.+.+++... ..++ +.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl--~---~~~~~~~--~~~~l~~~l~~~~p~~-~~~~-v~ 167 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELL--K---EFPILPE--PYREIHEFLLERVPEY-EGER-LS 167 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCC--S---CCCCCCT--TSHHHHHHHHHHCSEE-ECSS-EE
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHH--H---hhHhchH--hHHHHHHHHHHhCccc-cCCc-EE
Confidence 4589999999999976654443334555554 66665331 0 0000000 0011111222222211 1122 33
Q ss_pred eEeeecchhhhhhhcC-CcEeEEEEcCCCC--CCcHH--HHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 234 VPFSSGSALTKLCEWG-VVGDLIEIDAGHD--FNSAW--ADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 234 V~~~~gda~~~L~~l~-~~fDLIfIDa~h~--~~~v~--~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
+.+..||+.+.|+.+. ..+|+||.||--+ ++.+| ..++.+.++++|||+++. |.. ..+|+.-+..-
T Consensus 168 L~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yta-------ag~VRR~L~~a 238 (308)
T 3vyw_A 168 LKVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YSS-------SLSVRKSLLTL 238 (308)
T ss_dssp EEEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SCC-------CHHHHHHHHHT
T ss_pred EEEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--EeC-------cHHHHHHHHHC
Confidence 6778899999999875 4899999998532 33443 468999999999999986 443 23444445566
Q ss_pred CCeEEE
Q 041517 309 GLKVQI 314 (327)
Q Consensus 309 gl~v~~ 314 (327)
|++|..
T Consensus 239 GF~V~k 244 (308)
T 3vyw_A 239 GFKVGS 244 (308)
T ss_dssp TCEEEE
T ss_pred CCEEEe
Confidence 888763
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.91 E-value=1.6e-05 Score=77.18 Aligned_cols=82 Identities=13% Similarity=0.023 Sum_probs=62.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCC----------------------------------CcEEEEEeCCCCChhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGL----------------------------------DSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~----------------------------------~~~V~~ID~~~~~~~~A~ 200 (327)
+...|||.|||+|..++.+|.......| ..+|+++|+++.+.+.|+
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 3568999999999999999886543322 268999999999999887
Q ss_pred hhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC
Q 041517 201 KFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG 260 (327)
Q Consensus 201 ~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~ 260 (327)
+ |+...|..+. |.+..+|..+... +.+||+|+.|-.
T Consensus 275 ~-------------------Na~~~gl~~~---i~~~~~D~~~l~~--~~~~D~Iv~NPP 310 (385)
T 3ldu_A 275 E-------------------NAEIAGVDEY---IEFNVGDATQFKS--EDEFGFIITNPP 310 (385)
T ss_dssp H-------------------HHHHHTCGGG---EEEEECCGGGCCC--SCBSCEEEECCC
T ss_pred H-------------------HHHHcCCCCc---eEEEECChhhcCc--CCCCcEEEECCC
Confidence 6 5555555444 8899998877432 368999999854
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=75.61 Aligned_cols=82 Identities=10% Similarity=-0.037 Sum_probs=62.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCC----------------------------------CcEEEEEeCCCCChhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGL----------------------------------DSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~----------------------------------~~~V~~ID~~~~~~~~A~ 200 (327)
+...|||.|||+|..++.+|.......| ..+|+++|+++.+.+.|+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 4568999999999999998886544332 267999999999998887
Q ss_pred hhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC
Q 041517 201 KFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG 260 (327)
Q Consensus 201 ~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~ 260 (327)
+ |+...|+.+. |.+..+|+.+... ..+||+|+.|-.
T Consensus 281 ~-------------------Na~~~gl~~~---I~~~~~D~~~~~~--~~~fD~Iv~NPP 316 (393)
T 3k0b_A 281 Q-------------------NAVEAGLGDL---ITFRQLQVADFQT--EDEYGVVVANPP 316 (393)
T ss_dssp H-------------------HHHHTTCTTC---SEEEECCGGGCCC--CCCSCEEEECCC
T ss_pred H-------------------HHHHcCCCCc---eEEEECChHhCCC--CCCCCEEEECCC
Confidence 6 5666666555 8888898877422 358999999843
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.7e-05 Score=71.36 Aligned_cols=95 Identities=16% Similarity=0.124 Sum_probs=61.5
Q ss_pred HHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 146 VFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 146 lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
++..+++.. .+++|||||||+|..|..+++. +.+|++||.++.+.+.+++. +.
T Consensus 35 i~~~Iv~~~~~~~~~VLEIG~G~G~lt~~L~~~------~~~V~avEid~~~~~~l~~~-------------------~~ 89 (271)
T 3fut_A 35 HLRRIVEAARPFTGPVFEVGPGLGALTRALLEA------GAEVTAIEKDLRLRPVLEET-------------------LS 89 (271)
T ss_dssp HHHHHHHHHCCCCSCEEEECCTTSHHHHHHHHT------TCCEEEEESCGGGHHHHHHH-------------------TT
T ss_pred HHHHHHHhcCCCCCeEEEEeCchHHHHHHHHHc------CCEEEEEECCHHHHHHHHHh-------------------cC
Confidence 444444432 2239999999999999999984 47899999999999877652 21
Q ss_pred hhccCCcccceEeeecchhhh-hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc
Q 041517 224 YQNAIDSVLPVPFSSGSALTK-LCEWGVVGDLIEIDAGHDFNSAWADINRAWR 275 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~-L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~ 275 (327)
. ++ +.+..+|+.+. ++.. ..+|.|+-. .+|+-....+..++.
T Consensus 90 ~----~~---v~vi~~D~l~~~~~~~-~~~~~iv~N--lPy~iss~il~~ll~ 132 (271)
T 3fut_A 90 G----LP---VRLVFQDALLYPWEEV-PQGSLLVAN--LPYHIATPLVTRLLK 132 (271)
T ss_dssp T----SS---EEEEESCGGGSCGGGS-CTTEEEEEE--ECSSCCHHHHHHHHH
T ss_pred C----CC---EEEEECChhhCChhhc-cCccEEEec--CcccccHHHHHHHhc
Confidence 1 12 78888988763 2221 246776654 334333344444443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.78 E-value=6.9e-05 Score=72.85 Aligned_cols=81 Identities=10% Similarity=-0.020 Sum_probs=62.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCC----------------------------------CcEEEEEeCCCCChhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGL----------------------------------DSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~----------------------------------~~~V~~ID~~~~~~~~A~ 200 (327)
+...++|.+||+|...+..|.......| ..+|+++|.++.+.+.|+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 3568999999999999998876544322 257999999999998887
Q ss_pred hhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC
Q 041517 201 KFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA 259 (327)
Q Consensus 201 ~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa 259 (327)
+ |+...|+.+. +.+..+|+.+... ...||+|+.|-
T Consensus 274 ~-------------------Na~~~gl~~~---I~~~~~D~~~l~~--~~~fD~Iv~NP 308 (384)
T 3ldg_A 274 K-------------------NAREVGLEDV---VKLKQMRLQDFKT--NKINGVLISNP 308 (384)
T ss_dssp H-------------------HHHHTTCTTT---EEEEECCGGGCCC--CCCSCEEEECC
T ss_pred H-------------------HHHHcCCCCc---eEEEECChHHCCc--cCCcCEEEECC
Confidence 6 6666676655 8899998877422 35899999983
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.71 E-value=4.8e-05 Score=77.14 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=73.1
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC--------------CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL--------------DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~--------------~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+|+|.|||+|...+.+++.++.... ...++++|+++.+..+|+. |
T Consensus 170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~-------------------n 230 (541)
T 2ar0_A 170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM-------------------N 230 (541)
T ss_dssp TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH-------------------H
T ss_pred CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHH-------------------H
Confidence 468999999999999999887653321 2479999999998888765 3
Q ss_pred HhhhccCCc-ccceEeeecchhhhhhhcCCcEeEEEEcCCCC---------------CCcHHHHHHHHHccCCCCeEEEE
Q 041517 222 VIYQNAIDS-VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD---------------FNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 222 v~~~g~~~~-v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---------------~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+...|.... -..+.+..+|++........+||+|+.+--.. ...-...++.++++|+|||.+++
T Consensus 231 l~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~ 310 (541)
T 2ar0_A 231 CLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV 310 (541)
T ss_dssp HHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEE
Confidence 332232210 00145667777654322246899999863211 11123568899999999996654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.69 E-value=4.9e-05 Score=79.10 Aligned_cols=110 Identities=12% Similarity=0.014 Sum_probs=71.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCC---------CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLG---------LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN 226 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~---------~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g 226 (327)
...||+||||+|-.....+++.+..+ ...+|++||-++......+ .....+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~--------------------~~~~Ng 469 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLK--------------------YMNVRT 469 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHH--------------------HHHHHT
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHH--------------------HHHhcC
Confidence 45899999999999755444432222 2459999999874332111 111245
Q ss_pred cCCcccceEeeecchhhh-hh---hcCCcEeEEEEcCC---CCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 227 AIDSVLPVPFSSGSALTK-LC---EWGVVGDLIEIDAG---HDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 227 ~~~~v~~V~~~~gda~~~-L~---~l~~~fDLIfIDa~---h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.++ |.+++++..+. ++ ...++.|+|+..-. ..++-..+.|..+.+.|+|||+++=+-+
T Consensus 470 ~~d~---VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP~~~ 535 (745)
T 3ua3_A 470 WKRR---VTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKY 535 (745)
T ss_dssp TTTC---SEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEESCEE
T ss_pred CCCe---EEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEECCcc
Confidence 6666 88899998885 21 11478999997633 2234344567777889999999874444
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.62 E-value=3e-05 Score=65.62 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=70.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+||+||||. +++|+++.|.+.+++... .. +
T Consensus 12 ~g~~vL~~~~g~--------------------v~vD~s~~ml~~a~~~~~------------------------~~---~ 44 (176)
T 2ld4_A 12 AGQFVAVVWDKS--------------------SPVEALKGLVDKLQALTG------------------------NE---G 44 (176)
T ss_dssp TTSEEEEEECTT--------------------SCHHHHHHHHHHHHHHTT------------------------TT---S
T ss_pred CCCEEEEecCCc--------------------eeeeCCHHHHHHHHHhcc------------------------cC---c
Confidence 357999999974 127887777776655211 11 5
Q ss_pred Eeeecchhhhhhh---cCCcEeEEEE-cCCCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCC----CchhHHHHHHHHH
Q 041517 235 PFSSGSALTKLCE---WGVVGDLIEI-DAGHDF-NSAWADINRAWRILRPGGVIFGHDYFTAA----DNRGVRRAVNLFA 305 (327)
Q Consensus 235 ~~~~gda~~~L~~---l~~~fDLIfI-Da~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~----~~~GV~~Av~~f~ 305 (327)
.+..++..+. +. .+++||+|+. .+-|.. ......++++.+.|+|||++++.+..... .+.--...+...+
T Consensus 45 ~~~~~d~~~~-~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l 123 (176)
T 2ld4_A 45 RVSVENIKQL-LQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSAL 123 (176)
T ss_dssp EEEEEEGGGG-GGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHH
T ss_pred EEEEechhcC-ccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHH
Confidence 6667776553 33 3578999998 444544 45578899999999999999985432210 1111134455666
Q ss_pred HHcCCeEE
Q 041517 306 KINGLKVQ 313 (327)
Q Consensus 306 ~~~gl~v~ 313 (327)
...|+ +.
T Consensus 124 ~~aGf-i~ 130 (176)
T 2ld4_A 124 TLSGL-VE 130 (176)
T ss_dssp HHTTC-EE
T ss_pred HHCCC-cE
Confidence 77787 54
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00026 Score=73.85 Aligned_cols=109 Identities=9% Similarity=-0.107 Sum_probs=75.5
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCC--------------------------------------CcEEEEEeCCCCCh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGL--------------------------------------DSQILCIDDFRGWP 196 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~--------------------------------------~~~V~~ID~~~~~~ 196 (327)
+...|||.+||+|...+..|.....+.| ..+|+++|+++.+.
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 3568999999999999998876433322 25899999999999
Q ss_pred hhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCC----CC----CcHH
Q 041517 197 GFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGH----DF----NSAW 267 (327)
Q Consensus 197 ~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h----~~----~~v~ 267 (327)
+.|++ |+...|+.+. |.+..+|+.+..... .+.||+|+.+--. .. ....
T Consensus 270 ~~A~~-------------------N~~~agv~~~---i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly 327 (703)
T 3v97_A 270 QRART-------------------NARLAGIGEL---ITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALH 327 (703)
T ss_dssp HHHHH-------------------HHHHTTCGGG---EEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHH
T ss_pred HHHHH-------------------HHHHcCCCCc---eEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHH
Confidence 88876 6666676655 889999987742221 2379999998321 11 1123
Q ss_pred HHHHHHHccCCCCeEEEE
Q 041517 268 ADINRAWRILRPGGVIFG 285 (327)
Q Consensus 268 ~dl~~~~~lL~pGGvIi~ 285 (327)
..+...++.+.|||.+.+
T Consensus 328 ~~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 328 SLLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp HHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHhhCCCCeEEE
Confidence 345556666778986555
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00022 Score=65.12 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=61.7
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
++..+++.. +..+|||||||+|..|..+++. + ..+|++||+++.+.+.+++. .
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~----~-~~~v~avEid~~~~~~~~~~-~------------------ 74 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH----P-LKKLYVIELDREMVENLKSI-G------------------ 74 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS----C-CSEEEEECCCHHHHHHHTTS-C------------------
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc----C-CCeEEEEECCHHHHHHHHhc-c------------------
Confidence 444444443 4579999999999999999873 2 48999999999988776552 1
Q ss_pred hhhccCCcccceEeeecchhhh-hhhcCCcEeEEEEcCCCCCCcHHHHHHHHHcc
Q 041517 223 IYQNAIDSVLPVPFSSGSALTK-LCEWGVVGDLIEIDAGHDFNSAWADINRAWRI 276 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~-L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~l 276 (327)
..+ +.+..+|+.+. ++....++ .|+ ++.+|+-....+..++..
T Consensus 75 -----~~~---v~~i~~D~~~~~~~~~~~~~-~vv--~NlPy~i~~~il~~ll~~ 118 (249)
T 3ftd_A 75 -----DER---LEVINEDASKFPFCSLGKEL-KVV--GNLPYNVASLIIENTVYN 118 (249)
T ss_dssp -----CTT---EEEECSCTTTCCGGGSCSSE-EEE--EECCTTTHHHHHHHHHHT
T ss_pred -----CCC---eEEEEcchhhCChhHccCCc-EEE--EECchhccHHHHHHHHhc
Confidence 112 77888887763 33322233 333 344555544555555553
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00084 Score=69.42 Aligned_cols=149 Identities=15% Similarity=0.017 Sum_probs=91.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccC---CC-----CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQL---GL-----DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ- 225 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l---~~-----~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~- 225 (327)
++-+|+|+|.|+|++.+.+.++.+.. .| .-++++||.++-..+..++-...-. ....+.+++++.....
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~ 135 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWP--ELASFAEQLRAQWPLPL 135 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCG--GGHHHHHHHHHTCCCCC
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCc--chhHHHHHHHHhCcccC
Confidence 34689999999999999988765321 11 2579999999865554333111000 0011222333322110
Q ss_pred -c-----cCCcccceEeeecchhhhhhhc----CCcEeEEEEcCCCCC--CcH--HHHHHHHHccCCCCeEEEEEcCCCC
Q 041517 226 -N-----AIDSVLPVPFSSGSALTKLCEW----GVVGDLIEIDAGHDF--NSA--WADINRAWRILRPGGVIFGHDYFTA 291 (327)
Q Consensus 226 -g-----~~~~v~~V~~~~gda~~~L~~l----~~~fDLIfIDa~h~~--~~v--~~dl~~~~~lL~pGGvIi~dD~~~~ 291 (327)
| +.+.-+.+.+..||+.+.|+.+ ...+|.+|+|+-.+. +.+ ...+..+.++++|||.+...-..
T Consensus 136 ~~~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~-- 213 (689)
T 3pvc_A 136 AGCHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFTAA-- 213 (689)
T ss_dssp SEEEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESCCC--
T ss_pred CCceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEeccCc--
Confidence 1 1111123778899999999987 478999999986432 222 35678899999999998864332
Q ss_pred CCchhHHHHHHHHHHHcCCeEEE
Q 041517 292 ADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 292 ~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
..|++++ ...|+.+..
T Consensus 214 ---~~vr~~l----~~aGf~~~~ 229 (689)
T 3pvc_A 214 ---GFVRRGL----QQAGFNVTK 229 (689)
T ss_dssp ---HHHHHHH----HHTTCEEEE
T ss_pred ---HHHHHHH----HhCCeEEEe
Confidence 2355544 456776654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.38 E-value=9.7e-05 Score=67.67 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=33.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
+..+|||||||+|..|. +++ +...+|++||+++.+.+.+++.
T Consensus 21 ~~~~VLEIG~G~G~lt~-l~~-----~~~~~v~avEid~~~~~~a~~~ 62 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-PVG-----ERLDQLTVIELDRDLAARLQTH 62 (252)
T ss_dssp TTCCEEEECCTTTTTHH-HHH-----TTCSCEEEECCCHHHHHHHHTC
T ss_pred CcCEEEEECCCCcHHHH-hhh-----CCCCeEEEEECCHHHHHHHHHH
Confidence 35689999999999999 654 1123499999999999887663
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00018 Score=73.01 Aligned_cols=118 Identities=7% Similarity=-0.011 Sum_probs=74.3
Q ss_pred HHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCC-----------CcEEEEEeCCCCChhhhhhhcccCccccch
Q 041517 146 VFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGL-----------DSQILCIDDFRGWPGFRDKFKEIPMVNGNV 212 (327)
Q Consensus 146 lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~-----------~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~ 212 (327)
+...+++.+. +++|+|.+||+|...+.+++.++.... ...++++|+++.+..+|+.
T Consensus 233 Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~----------- 301 (544)
T 3khk_A 233 IVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM----------- 301 (544)
T ss_dssp HHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH-----------
T ss_pred HHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH-----------
Confidence 4444444443 358999999999998888765432211 4689999999988887765
Q ss_pred HHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC------------------------------
Q 041517 213 LLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD------------------------------ 262 (327)
Q Consensus 213 ~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~------------------------------ 262 (327)
|+...|.... +.+..+|++..-.....+||+|+.+--..
T Consensus 302 --------Nl~l~gi~~~---i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~ 370 (544)
T 3khk_A 302 --------NMVIRGIDFN---FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPT 370 (544)
T ss_dssp --------HHHHTTCCCB---CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCT
T ss_pred --------HHHHhCCCcc---cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCC
Confidence 4444444322 33456665543112246899999752110
Q ss_pred CCcHHHHHHHHHccCCCCeEEEE
Q 041517 263 FNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 263 ~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
...-+..++.++++|+|||.+++
T Consensus 371 ~~~~~~Fl~~~l~~Lk~gGr~ai 393 (544)
T 3khk_A 371 GNANFAWMLHMLYHLAPTGSMAL 393 (544)
T ss_dssp TCTHHHHHHHHHHTEEEEEEEEE
T ss_pred cchhHHHHHHHHHHhccCceEEE
Confidence 01123568899999999997543
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0002 Score=66.60 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=36.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCC-CcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGL-DSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~-~~~V~~ID~~~~~~~~A~~ 201 (327)
...+|||||||+|..|..+++.. .. +++|++||+++.+.+.+++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~---~~~~~~V~avDid~~~l~~a~~ 86 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARL---ATPGSPLHAVELDRDLIGRLEQ 86 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHH---CBTTBCEEEEECCHHHHHHHHH
T ss_pred CcCEEEEEccccHHHHHHHHHhC---CCcCCeEEEEECCHHHHHHHHH
Confidence 46799999999999999999852 22 3569999999999887765
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0014 Score=66.51 Aligned_cols=109 Identities=12% Similarity=0.022 Sum_probs=72.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
...+|+|.+||+|...+.+++.++. .....++|+|+++.+..+|+. |+...|... -.+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~-~~~~~i~G~Eid~~~~~lA~~-------------------Nl~l~gi~~--~~~ 278 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQ-PQTVVYFGQELNTSTYNLARM-------------------NMILHGVPI--ENQ 278 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSC-TTTCEEEEEESCHHHHHHHHH-------------------HHHHTTCCG--GGE
T ss_pred CCCEEeecccchhHHHHHHHHHHHh-ccCceEEEEECcHHHHHHHHH-------------------HHHHcCCCc--Ccc
Confidence 3469999999999999988886542 236799999999988887765 333333321 015
Q ss_pred Eeeecchhhh-hh-hcCCcEeEEEEcCC----C----------CC----------CcHHHHHHHHHccCC-CCeEEEE
Q 041517 235 PFSSGSALTK-LC-EWGVVGDLIEIDAG----H----------DF----------NSAWADINRAWRILR-PGGVIFG 285 (327)
Q Consensus 235 ~~~~gda~~~-L~-~l~~~fDLIfIDa~----h----------~~----------~~v~~dl~~~~~lL~-pGGvIi~ 285 (327)
.+..+|+... .+ ....+||+|+.+-- . .+ ..-+..++.++.+|+ +||++++
T Consensus 279 ~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~ 356 (542)
T 3lkd_A 279 FLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAI 356 (542)
T ss_dssp EEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEE
T ss_pred ceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEE
Confidence 6777877653 11 12468999996511 0 00 012346889999999 9997643
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0054 Score=52.46 Aligned_cols=115 Identities=16% Similarity=0.144 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhhcC--CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 142 SYGAVFGNLIDKVR--PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 142 ~~g~lL~~L~~~~~--p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
.|...|.+.+.... ++-|+|+|-|+|.+--+|.+. -++.+|+.+|-.-.... +
T Consensus 25 aQR~~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~----~P~R~I~vfDR~~~~hp------~--------------- 79 (174)
T 3iht_A 25 SQRACLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQH----VQGREIYVFERAVASHP------D--------------- 79 (174)
T ss_dssp HHHHHHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHH----CCSSCEEEEESSCCCCG------G---------------
T ss_pred HHHHHHHHHHHHhcCCCCceEEecCCCChhHHHHHHh----CCCCcEEEEEeeeccCC------C---------------
Confidence 45567777776654 689999999999999999985 45999999998543211 0
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhh----cCCcEeEEEEcCCCCCCcHHHHHH-----HHHccCCCCeEEEEEcCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCE----WGVVGDLIEIDAGHDFNSAWADIN-----RAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~----l~~~fDLIfIDa~h~~~~v~~dl~-----~~~~lL~pGGvIi~dD~~~ 290 (327)
-... . -.+..|+..++|+. ++.+.-|++.|-+-.+...-.... .+.++|.|||+++-.+-..
T Consensus 80 -~~P~-----~---e~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl~ 150 (174)
T 3iht_A 80 -STPP-----E---AQLILGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRMY 150 (174)
T ss_dssp -GCCC-----G---GGEEESCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCCC
T ss_pred -CCCc-----h---HheecccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccC
Confidence 0000 0 23567888888765 478999999996544433212222 3357999999999887663
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0085 Score=57.98 Aligned_cols=119 Identities=8% Similarity=-0.025 Sum_probs=75.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|+..|.-|..+++. +++|++||.-+-... +...+ . |.
T Consensus 212 G~~vlDLGAaPGGWT~~l~~r------g~~V~aVD~~~l~~~------------------------l~~~~---~---V~ 255 (375)
T 4auk_A 212 GMWAVDLGACPGGWTYQLVKR------NMWVYSVDNGPMAQS------------------------LMDTG---Q---VT 255 (375)
T ss_dssp TCEEEEETCTTCHHHHHHHHT------TCEEEEECSSCCCHH------------------------HHTTT---C---EE
T ss_pred CCEEEEeCcCCCHHHHHHHHC------CCEEEEEEhhhcChh------------------------hccCC---C---eE
Confidence 568999999999999998873 789999998542111 11111 2 77
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHH---HHHHHcCCe
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVN---LFAKINGLK 311 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~---~f~~~~gl~ 311 (327)
+..+|+.+..+. ..++|+|+.|..-....+..-+..|+.....++.|+.--......+..+++... ...+..|+.
T Consensus 256 ~~~~d~~~~~~~-~~~~D~vvsDm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~~l~~~~~~i~~~l~~~g~~ 333 (375)
T 4auk_A 256 WLREDGFKFRPT-RSNISWMVCDMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGIN 333 (375)
T ss_dssp EECSCTTTCCCC-SSCEEEEEECCSSCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEeCccccccCC-CCCcCEEEEcCCCChHHhHHHHHHHHhccccceEEEEEEecccchHHHHHHHHHHHHHHHHhcCcc
Confidence 778887664332 368999999987644445555666666666667665433322233344544433 444555654
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0019 Score=54.81 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=38.1
Q ss_pred HHHHHHHHhhcC-CCEEEEEcCcch-HHHHHHHHHhccCCCCcEEEEEeCCCCChh
Q 041517 144 GAVFGNLIDKVR-PRVIIEVGSFLG-ASALHMANLTRQLGLDSQILCIDDFRGWPG 197 (327)
Q Consensus 144 g~lL~~L~~~~~-p~~VLEIGt~~G-~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~ 197 (327)
..+...+.+... +.+|||||||.| ..|..|++- .+-.|+++|+++...+
T Consensus 23 e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~-----~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 23 NDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKH-----SKVDLVLTDIKPSHGG 73 (153)
T ss_dssp HHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHH-----SCCEEEEECSSCSSTT
T ss_pred HHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHh-----CCCeEEEEECCccccc
Confidence 345556666555 679999999999 599999972 1678999999987664
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.011 Score=62.70 Aligned_cols=43 Identities=14% Similarity=-0.006 Sum_probs=35.1
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A 199 (327)
..+|+|.|||+|...+.+++.+... ...+++++|+++.+...|
T Consensus 322 g~rVLDPaCGSG~FLIaaA~~l~ei-~~~~IyGvEIDp~Al~LA 364 (878)
T 3s1s_A 322 DEVISDPAAGSGNLLATVSAGFNNV-MPRQIWANDIETLFLELL 364 (878)
T ss_dssp TCEEEETTCTTSHHHHHHHHTSTTC-CGGGEEEECSCGGGHHHH
T ss_pred CCEEEECCCCccHHHHHHHHHhccc-CCCeEEEEECCHHHHHHH
Confidence 5699999999999999988853211 246899999999988887
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0067 Score=56.40 Aligned_cols=122 Identities=13% Similarity=0.030 Sum_probs=69.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||+.|..+-.+++. ..-..++++|+...+........ .. +. .+ +.
T Consensus 75 ~~~VLDLGaAPGGWSQvAa~~----~~~~~v~g~dVGvDl~~~pi~~~-----------------~~---g~--~i--i~ 126 (277)
T 3evf_A 75 EGRVIDLGCGRGGWCYYAAAQ----KEVSGVKGFTLGRDGHEKPMNVQ-----------------SL---GW--NI--IT 126 (277)
T ss_dssp CEEEEEETCTTCHHHHHHHTS----TTEEEEEEECCCCTTCCCCCCCC-----------------BT---TG--GG--EE
T ss_pred CCEEEEecCCCCHHHHHHHHh----cCCCcceeEEEeccCcccccccC-----------------cC---CC--Ce--EE
Confidence 468999999999999987762 22457788888654321110000 00 00 00 22
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCC----CCcH---HHHHHHHHccCCCC-eEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHD----FNSA---WADINRAWRILRPG-GVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~----~~~v---~~dl~~~~~lL~pG-GvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
+ .++. +.....+++||+|..|.... +.+. ..-++.+.+.|+|| |.+|+ .++. |--+++.+.+..+-..
T Consensus 127 ~-~~~~-dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~-pyg~~~~~l~~~lk~~ 202 (277)
T 3evf_A 127 F-KDKT-DIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA-PYMPDVLEKLELLQRR 202 (277)
T ss_dssp E-ECSC-CTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC-TTSHHHHHHHHHHHHH
T ss_pred E-eccc-eehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC-CCCccHHHHHHHHHHh
Confidence 2 2221 21122257899999997543 1111 11247778999999 99999 5554 2225566666666544
Q ss_pred cC
Q 041517 308 NG 309 (327)
Q Consensus 308 ~g 309 (327)
.+
T Consensus 203 F~ 204 (277)
T 3evf_A 203 FG 204 (277)
T ss_dssp HC
T ss_pred cC
Confidence 33
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.015 Score=59.72 Aligned_cols=146 Identities=15% Similarity=0.003 Sum_probs=86.9
Q ss_pred CEEEEEcCcchHHHHHHHHHhccC---C-----CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh--hc
Q 041517 157 RVIIEVGSFLGASALHMANLTRQL---G-----LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY--QN 226 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l---~-----~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~--~g 226 (327)
-+|+|+|-|+|++++...+..+.. . ..-.++++|.+|-..+..++....-.. ...+.+++++.... .|
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPE--LAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGG--GHHHHHHHHHHCCCCCSE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChh--hHHHHHHHHHhCcccCCC
Confidence 489999999999998877765321 1 124689999988555433321110000 01122233322211 01
Q ss_pred c-----CCcccceEeeecchhhhhhhc----CCcEeEEEEcCCCC--CCcH--HHHHHHHHccCCCCeEEEEEcCCCCCC
Q 041517 227 A-----IDSVLPVPFSSGSALTKLCEW----GVVGDLIEIDAGHD--FNSA--WADINRAWRILRPGGVIFGHDYFTAAD 293 (327)
Q Consensus 227 ~-----~~~v~~V~~~~gda~~~L~~l----~~~fDLIfIDa~h~--~~~v--~~dl~~~~~lL~pGGvIi~dD~~~~~~ 293 (327)
+ .+.-+.+.+..||+.+.|+.+ ...||.||.|+--+ ++.+ ...+..+.++++|||.+...-..
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~~~---- 221 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSA---- 221 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESCCC----
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEeccCc----
Confidence 1 110123667789999999987 36899999998532 2333 24578999999999998864332
Q ss_pred chhHHHHHHHHHHHcCCeEE
Q 041517 294 NRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 294 ~~GV~~Av~~f~~~~gl~v~ 313 (327)
..|++++. ..|+.+.
T Consensus 222 -~~vr~~L~----~aGf~v~ 236 (676)
T 3ps9_A 222 -GFVRRGLQ----DAGFTMQ 236 (676)
T ss_dssp -HHHHHHHH----HHTCEEE
T ss_pred -HHHHHHHH----hCCeEEE
Confidence 23555554 4566554
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0058 Score=57.05 Aligned_cols=50 Identities=8% Similarity=-0.068 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+++..|. ....+.+||++||.|.-|..|++. +++|++||.++.+.+.+++
T Consensus 13 e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~------~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 13 EALDLLA-VRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp HHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHH
T ss_pred HHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC------CCEEEEEeCCHHHHHHHHh
Confidence 3444442 224579999999999999999983 7899999999988877655
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.053 Score=50.95 Aligned_cols=118 Identities=16% Similarity=0.104 Sum_probs=76.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChh---hhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPG---FRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~---~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+|||+||+.|..+-..+.. .+ -.+|+++|+-..-.+ ..+++ | .|+
T Consensus 95 ~~~VlDLGaapGGwsq~~~~~---~g-v~~V~avdvG~~~he~P~~~~ql-------~---------w~l---------- 144 (321)
T 3lkz_A 95 VGKVIDLGCGRGGWCYYMATQ---KR-VQEVRGYTKGGPGHEEPQLVQSY-------G---------WNI---------- 144 (321)
T ss_dssp CEEEEEETCTTCHHHHHHTTC---TT-EEEEEEECCCSTTSCCCCCCCBT-------T---------GGG----------
T ss_pred CCEEEEeCCCCCcHHHHHHhh---cC-CCEEEEEEcCCCCccCcchhhhc-------C---------Ccc----------
Confidence 468999999999999887762 22 448999999765221 11110 0 011
Q ss_pred ceEeeec-chhhhhhhcCCcEeEEEEcCCCCCCc-------HHHHHHHHHccCCCC-eEEEEEcCCCCCCchhHHHHHHH
Q 041517 233 PVPFSSG-SALTKLCEWGVVGDLIEIDAGHDFNS-------AWADINRAWRILRPG-GVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 233 ~V~~~~g-da~~~L~~l~~~fDLIfIDa~h~~~~-------v~~dl~~~~~lL~pG-GvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
|.+.++ |... ++. .++|+|.+|-.-.... .+..|+.+.+.|++| |-.|+ -++. |.-++|.++++.
T Consensus 145 -V~~~~~~Dv~~-l~~--~~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~-KVl~-pY~~~v~e~l~~ 218 (321)
T 3lkz_A 145 -VTMKSGVDVFY-RPS--ECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV-KVLC-PYMPKVIEKMEL 218 (321)
T ss_dssp -EEEECSCCTTS-SCC--CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE-EESC-TTSHHHHHHHHH
T ss_pred -eEEEeccCHhh-CCC--CCCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE-EEcC-CCChHHHHHHHH
Confidence 666666 4322 222 6799999997744322 233566667788888 76665 4544 555789899998
Q ss_pred HHHHcC
Q 041517 304 FAKING 309 (327)
Q Consensus 304 f~~~~g 309 (327)
+-...|
T Consensus 219 lq~~fg 224 (321)
T 3lkz_A 219 LQRRYG 224 (321)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 887765
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.012 Score=55.00 Aligned_cols=122 Identities=9% Similarity=-0.043 Sum_probs=73.4
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
+...+..+|++=+|+|..++.+.+ ...+++.||.++.....-++ |+.. .++
T Consensus 88 ~~~n~~~~LDlfaGSGaLgiEaLS------~~d~~vfvE~~~~a~~~L~~-------------------Nl~~---~~~- 138 (283)
T 2oo3_A 88 KQINLNSTLSYYPGSPYFAINQLR------SQDRLYLCELHPTEYNFLLK-------------------LPHF---NKK- 138 (283)
T ss_dssp HHHSSSSSCCEEECHHHHHHHHSC------TTSEEEEECCSHHHHHHHTT-------------------SCCT---TSC-
T ss_pred HHhcCCCceeEeCCcHHHHHHHcC------CCCeEEEEeCCHHHHHHHHH-------------------HhCc---CCc-
Confidence 335678899998888888777554 35899999998765544443 3322 123
Q ss_pred cceEeeecchhhhhhhc---CCcEeEEEEcCCCCC-CcHHHHHHHHHc--cCCCCeEEEEEcCCCCCCchhHHHHHHHHH
Q 041517 232 LPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDF-NSAWADINRAWR--ILRPGGVIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~-~~v~~dl~~~~~--lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
+++...|+...|..+ +.+||+||||-.-.. ......++.+.. .+.|+|++++ |..=.+-..+.+..+.+.
T Consensus 139 --~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~--WYPi~~~~~~~~~~~~l~ 214 (283)
T 2oo3_A 139 --VYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV--WYPVVNKAWTEQFLRKMR 214 (283)
T ss_dssp --EEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE--EEEESSHHHHHHHHHHHH
T ss_pred --EEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE--EEeccchHHHHHHHHHHH
Confidence 788888988877654 247999999975432 222223333322 4667787776 322111223555555554
Q ss_pred H
Q 041517 306 K 306 (327)
Q Consensus 306 ~ 306 (327)
+
T Consensus 215 ~ 215 (283)
T 2oo3_A 215 E 215 (283)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.30 E-value=0.013 Score=54.30 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=41.4
Q ss_pred HHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.++..+++.. ....|||++||+|..++.+++. +.++++||+++.+.+.+++
T Consensus 223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~------g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW------GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHT------TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHH
Confidence 4666666543 4579999999999999987774 6899999999999888876
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.047 Score=50.34 Aligned_cols=120 Identities=13% Similarity=0.029 Sum_probs=72.0
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCC-CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGL-DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~-~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..+|||+||+-|.=+...++.. ..+. .+.++++|. +. ..+.... . ++ + -+
T Consensus 74 g~~VVDLGaAPGGWSQvAa~~~-~vg~V~G~vig~D~-~~-~P~~~~~------~-----------Gv---~------~i 124 (269)
T 2px2_A 74 IGKVVDLGCGRGGWSYYAATMK-NVQEVRGYTKGGPG-HE-EPMLMQS------Y-----------GW---N------IV 124 (269)
T ss_dssp CEEEEEETCTTSHHHHHHTTST-TEEEEEEECCCSTT-SC-CCCCCCS------T-----------TG---G------GE
T ss_pred CCEEEEcCCCCCHHHHHHhhhc-CCCCceeEEEcccc-cc-CCCcccC------C-----------Cc---e------EE
Confidence 4689999999999888877631 1222 456667663 11 1000000 0 11 0 15
Q ss_pred Eeeec-chhhhhhhcCCcEeEEEEcCCCCCCc-------HHHHHHHHHccCCCCe-EEEEEcCCCCCCchhHHHHHHHHH
Q 041517 235 PFSSG-SALTKLCEWGVVGDLIEIDAGHDFNS-------AWADINRAWRILRPGG-VIFGHDYFTAADNRGVRRAVNLFA 305 (327)
Q Consensus 235 ~~~~g-da~~~L~~l~~~fDLIfIDa~h~~~~-------v~~dl~~~~~lL~pGG-vIi~dD~~~~~~~~GV~~Av~~f~ 305 (327)
.|.+| |..+ +. +.++|+|..|....... ....++.+.+.|+||| -+++- ++. +..+++.+.++.+-
T Consensus 125 ~~~~G~Df~~-~~--~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK-VFq-g~~~~~~~~l~~lk 199 (269)
T 2px2_A 125 TMKSGVDVFY-KP--SEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK-ILC-PYMPKVIEKLESLQ 199 (269)
T ss_dssp EEECSCCGGG-SC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE-ESC-TTSHHHHHHHHHHH
T ss_pred EeeccCCccC-CC--CCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE-ECC-CCchHHHHHHHHHH
Confidence 55556 6554 11 45899999997643111 2235777889999999 77774 333 56678888777776
Q ss_pred HHcC
Q 041517 306 KING 309 (327)
Q Consensus 306 ~~~g 309 (327)
+..+
T Consensus 200 ~~F~ 203 (269)
T 2px2_A 200 RRFG 203 (269)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 6544
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.17 Score=46.26 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=77.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||+.|..+-..+.. .+ -.+|+++|+-..-.+.-+ .+...|. ..|.
T Consensus 79 g~~VvDLGaapGGWSq~~a~~---~g-~~~V~avdvG~~ghe~P~--------------------~~~s~gw----n~v~ 130 (267)
T 3p8z_A 79 EGRVIDLGCGRGGWSYYCAGL---KK-VTEVRGYTKGGPGHEEPV--------------------PMSTYGW----NIVK 130 (267)
T ss_dssp CEEEEEESCTTSHHHHHHHTS---TT-EEEEEEECCCSTTSCCCC--------------------CCCCTTT----TSEE
T ss_pred CCEEEEcCCCCCcHHHHHHHh---cC-CCEEEEEecCCCCccCcc--------------------hhhhcCc----CceE
Confidence 468999999999999987763 23 458999999764322100 0011121 1288
Q ss_pred eeec-chhhhhhhcCCcEeEEEEcCCCCCCc-------HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 236 FSSG-SALTKLCEWGVVGDLIEIDAGHDFNS-------AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 236 ~~~g-da~~~L~~l~~~fDLIfIDa~h~~~~-------v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
|.++ |... ++ ..++|.|..|-.-+... .+..|+.+.+.|++| -.++ -++. |..|.|.++++.+-..
T Consensus 131 fk~gvDv~~-~~--~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~~-~fc~-KVl~-py~p~v~e~l~~lq~~ 204 (267)
T 3p8z_A 131 LMSGKDVFY-LP--PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKNN-QFCI-KVLN-PYMPTVIEHLERLQRK 204 (267)
T ss_dssp EECSCCGGG-CC--CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSSC-EEEE-EESC-CCSHHHHHHHHHHHHH
T ss_pred EEeccceee-cC--CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhcccC-CEEE-EEcc-CCChhHHHHHHHHHHH
Confidence 8888 5422 22 36899999997654322 234567778889984 4444 4554 6667898999988877
Q ss_pred cC
Q 041517 308 NG 309 (327)
Q Consensus 308 ~g 309 (327)
.|
T Consensus 205 fg 206 (267)
T 3p8z_A 205 HG 206 (267)
T ss_dssp HC
T ss_pred hC
Confidence 65
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.023 Score=54.32 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=37.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRD 200 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~ 200 (327)
+.+.+||+.+|.|.-|..|++. ++++++|++||.++.+.+.++
T Consensus 57 pggiyVD~TlG~GGHS~~iL~~---lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 57 PDGIYIDGTFGRGGHSRLILSQ---LGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT---CCTTCEEEEEESCHHHHHHHT
T ss_pred CCCEEEEeCcCCCHHHHHHHHh---CCCCCEEEEEECCHHHHHHHH
Confidence 3579999999999999999984 788999999999998887764
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.1 Score=48.57 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=70.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||+.|..+-..++. . .-..++++|+...+...+..... .| .++ +.
T Consensus 91 ~~~VLDLGaAPGGWsQvAa~~---~-gv~sV~GvdvG~d~~~~pi~~~~----~g---------~~i-----------i~ 142 (282)
T 3gcz_A 91 TGIVVDLGCGRGGWSYYAASL---K-NVKKVMAFTLGVQGHEKPIMRTT----LG---------WNL-----------IR 142 (282)
T ss_dssp CEEEEEETCTTCHHHHHHHTS---T-TEEEEEEECCCCTTSCCCCCCCB----TT---------GGG-----------EE
T ss_pred CCEEEEeCCCCCHHHHHHHHh---c-CCCeeeeEEeccCcccccccccc----CC---------Cce-----------EE
Confidence 458999999999999887752 2 25578899997664332211000 00 011 22
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCC-----Cc--HHHHHHHHHccCCCC--eEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDF-----NS--AWADINRAWRILRPG--GVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~-----~~--v~~dl~~~~~lL~pG--GvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+..+- +.....+.++|+|..|..... +. ...-++.+...|+|| |.+|+-=+. +--+++.+.++.+-.
T Consensus 143 ~~~~~--dv~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~--pyg~~~~~l~~~lk~ 218 (282)
T 3gcz_A 143 FKDKT--DVFNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC--PYTPLIMEELSRLQL 218 (282)
T ss_dssp EECSC--CGGGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC--CCSHHHHHHHHHHHH
T ss_pred eeCCc--chhhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec--CCCccHHHHHHHHHH
Confidence 32221 111122478999999977541 11 112366778899999 998885444 112456666666554
Q ss_pred HcC
Q 041517 307 ING 309 (327)
Q Consensus 307 ~~g 309 (327)
..+
T Consensus 219 ~F~ 221 (282)
T 3gcz_A 219 KHG 221 (282)
T ss_dssp HHC
T ss_pred hcC
Confidence 433
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.39 Score=44.98 Aligned_cols=122 Identities=12% Similarity=-0.048 Sum_probs=69.7
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||+.|..+-.+++. . .-..|+++|+...+........ ..+. ++ +.
T Consensus 82 g~~vlDLGaaPGgWsqva~~~---~-gv~sV~Gvdlg~~~~~~P~~~~----~~~~---------~i-----------v~ 133 (300)
T 3eld_A 82 TGRVLDLGCGRGGWSYYAAAQ---K-EVMSVKGYTLGIEGHEKPIHMQ----TLGW---------NI-----------VK 133 (300)
T ss_dssp CEEEEEETCTTCHHHHHHHTS---T-TEEEEEEECCCCTTSCCCCCCC----BTTG---------GG-----------EE
T ss_pred CCEEEEcCCCCCHHHHHHHHh---c-CCceeeeEEecccccccccccc----ccCC---------ce-----------EE
Confidence 568999999999999998873 1 2446889998654322110000 0000 11 22
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCC-Cc------HHHHHHHHHccCCCC-eEEEEEcCCCCCCchhHHHHHHHHHHH
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDF-NS------AWADINRAWRILRPG-GVIFGHDYFTAADNRGVRRAVNLFAKI 307 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~------v~~dl~~~~~lL~pG-GvIi~dD~~~~~~~~GV~~Av~~f~~~ 307 (327)
+..+- +.....+.++|+|..|..... .. ...-++.+...|+|| |.+|+-=+. +--+++.+.+..+-..
T Consensus 134 ~~~~~--di~~l~~~~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~--~yG~~~~~ll~~lk~~ 209 (300)
T 3eld_A 134 FKDKS--NVFTMPTEPSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA--PYHPDVIEKLERLQLR 209 (300)
T ss_dssp EECSC--CTTTSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS--TTSHHHHHHHHHHHHH
T ss_pred eecCc--eeeecCCCCcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc--ccCccHHHHHHHHHHh
Confidence 22221 111112478999999976541 10 012267778999999 999986333 2124566666666544
Q ss_pred cC
Q 041517 308 NG 309 (327)
Q Consensus 308 ~g 309 (327)
.+
T Consensus 210 F~ 211 (300)
T 3eld_A 210 FG 211 (300)
T ss_dssp HC
T ss_pred CC
Confidence 43
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.28 Score=46.20 Aligned_cols=90 Identities=17% Similarity=-0.080 Sum_probs=57.6
Q ss_pred CCEEEEEcC------cchHHHHHHHHHhccCCC-CcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccC
Q 041517 156 PRVIIEVGS------FLGASALHMANLTRQLGL-DSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAI 228 (327)
Q Consensus 156 p~~VLEIGt------~~G~Sal~lA~a~r~l~~-~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~ 228 (327)
..+||++|+ .-|. ..+.+ +.+ ++.|+++|+.+-... +
T Consensus 110 gmrVLDLGA~s~kg~APGS--~VLr~----~~p~g~~VVavDL~~~~sd-a----------------------------- 153 (344)
T 3r24_A 110 NMRVIHFGAGSDKGVAPGT--AVLRQ----WLPTGTLLVDSDLNDFVSD-A----------------------------- 153 (344)
T ss_dssp TCEEEEESCCCTTSBCHHH--HHHHH----HSCTTCEEEEEESSCCBCS-S-----------------------------
T ss_pred CCEEEeCCCCCCCCCCCcH--HHHHH----hCCCCcEEEEeeCcccccC-C-----------------------------
Confidence 479999995 6666 23333 344 469999999764211 0
Q ss_pred CcccceEeeecchhhhhhhcCCcEeEEEEcCC-----C-------CCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 229 DSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-----H-------DFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 229 ~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-----h-------~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
++ +.+||..+. ..+.+||+|+.|.. + ...-+...++.+...|+|||-+++-=.
T Consensus 154 ----~~-~IqGD~~~~--~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 154 ----DS-TLIGDCATV--HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp ----SE-EEESCGGGE--EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ----Ce-EEEcccccc--ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 02 256664331 12578999999832 1 112245678889999999999988643
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.42 Score=46.27 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=18.3
Q ss_pred CCEEEEEcCcchHHHHHHHHH
Q 041517 156 PRVIIEVGSFLGASALHMANL 176 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a 176 (327)
+-+|+|+||++|..|+.+...
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ 73 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRD 73 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHHHH
Confidence 468999999999999987764
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.18 Score=48.14 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+|. |..++.+|++ ++ -.+|+++|.++...+.+++. |. + +
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~---~G-a~~Vi~~~~~~~~~~~a~~l-----------------------Ga-~-~-- 233 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARL---LG-AACVIVGDQNPERLKLLSDA-----------------------GF-E-T-- 233 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---HT-CSEEEEEESCHHHHHHHHTT-----------------------TC-E-E--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cC-CCEEEEEcCCHHHHHHHHHc-----------------------CC-c-E--
Confidence 457999999865 6677777775 33 23899999876554444331 21 1 1
Q ss_pred eEeeecch-hhhhhhc--CCcEeEEEEcCCCCCC---------cHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSA-LTKLCEW--GVVGDLIEIDAGHDFN---------SAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda-~~~L~~l--~~~fDLIfIDa~h~~~---------~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+. .+.+..+ +..+|+||--...... +....++.+++.|++||.+++--
T Consensus 234 i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 234 IDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 22222222 2333332 2369998754443210 01146888999999999887543
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.19 E-value=0.17 Score=43.07 Aligned_cols=96 Identities=17% Similarity=0.184 Sum_probs=55.0
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+.++||.+|. +.|..++.+++. . +.+|+++|.+++..+.+++ .|. +.+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~---~--G~~V~~~~~~~~~~~~~~~-----------------------~g~-~~~- 87 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKM---I--GARIYTTAGSDAKREMLSR-----------------------LGV-EYV- 87 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHH---H--TCEEEEEESSHHHHHHHHT-----------------------TCC-SEE-
T ss_pred CCCEEEEeeCCChHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHH-----------------------cCC-CEE-
Confidence 4578999994 445555555543 3 5789999986543332222 111 010
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+..+.+... +..+|+++.-+. . ..++.+++.|++||.++.--
T Consensus 88 -~d~~~~~~~~~~~~~~~~~~~D~vi~~~g----~--~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 88 -GDSRSVDFADEILELTDGYGVDVVLNSLA----G--EAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp -EETTCSTHHHHHHHHTTTCCEEEEEECCC----T--HHHHHHHHTEEEEEEEEECS
T ss_pred -eeCCcHHHHHHHHHHhCCCCCeEEEECCc----h--HHHHHHHHHhccCCEEEEEc
Confidence 222222222323221 246999986543 1 46789999999999888643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.13 Score=47.84 Aligned_cols=98 Identities=14% Similarity=0.070 Sum_probs=60.4
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||-+|+|. |..++.+|+. . +.+|+++|.++.-.+.+++. |. +.+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~---~--Ga~Vi~~~~~~~~~~~~~~l-----------------------Ga-~~~-- 214 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARA---M--GLRVAAVDIDDAKLNLARRL-----------------------GA-EVA-- 214 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHH---T--TCEEEEEESCHHHHHHHHHT-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---C--CCeEEEEeCCHHHHHHHHHc-----------------------CC-CEE--
Confidence 457888899864 6777777774 3 56999999977655444432 11 110
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+.+....+.+|+|+..... . ..++.+++.|++||.++.-..
T Consensus 215 i~~~~~~~~~~~~~~~g~~d~vid~~g~---~--~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 215 VNARDTDPAAWLQKEIGGAHGVLVTAVS---P--KAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp EETTTSCHHHHHHHHHSSEEEEEESSCC---H--HHHHHHHHHEEEEEEEEECSC
T ss_pred EeCCCcCHHHHHHHhCCCCCEEEEeCCC---H--HHHHHHHHHhccCCEEEEeCC
Confidence 2222223233332222479999776542 2 578899999999999887543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.92 Score=45.49 Aligned_cols=57 Identities=7% Similarity=-0.088 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCC---------CcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGL---------DSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~---------~~~V~~ID~~~~~~~~A~~ 201 (327)
.+|..++......+|+|-.||+|.+.+...+.++.... ...++|+|.++.+..+++-
T Consensus 207 ~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m 272 (530)
T 3ufb_A 207 RFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM 272 (530)
T ss_dssp HHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred HHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence 34444443333468999999999998888776654322 3469999998887766653
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.28 Score=47.54 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKF 202 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~ 202 (327)
+...|+|||++.|..++.+++. ..++.++|++||+.+...+..+++
T Consensus 226 ~~~~viDvGAn~G~~s~~~a~~--~~~~~~~V~afEP~p~~~~~L~~n 271 (409)
T 2py6_A 226 DSEKMVDCGASIGESLAGLIGV--TKGKFERVWMIEPDRINLQTLQNV 271 (409)
T ss_dssp SSCEEEEETCTTSHHHHHHHHH--HTSCCSEEEEECCCHHHHHHHHHH
T ss_pred CCCEEEECCCCcCHHHHHHHHH--hcCCCCEEEEEcCCHHHHHHHHHH
Confidence 4579999999999999998832 134458999999999876655443
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.46 E-value=0.22 Score=46.91 Aligned_cols=98 Identities=17% Similarity=0.129 Sum_probs=58.1
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+|. |..++.+|++ ++ -.+|+++|.+++-.+.+++. |. +.+
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~---~G-a~~Vi~~~~~~~~~~~a~~l-----------------------Ga-~~v-- 239 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKV---CG-ASIIIAVDIVESRLELAKQL-----------------------GA-THV-- 239 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHH---HT-CSEEEEEESCHHHHHHHHHH-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cC-CCeEEEECCCHHHHHHHHHc-----------------------CC-CEE--
Confidence 357899999865 6667777764 32 23799999876544444332 11 111
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+..+.+.++ ++.+|+||--... . ..++.+++.|++||.++.-.
T Consensus 240 i~~~~~~~~~~~~~~~~gg~D~vid~~g~---~--~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 240 INSKTQDPVAAIKEITDGGVNFALESTGS---P--EILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EETTTSCHHHHHHHHTTSCEEEEEECSCC---H--HHHHHHHHTEEEEEEEEECC
T ss_pred ecCCccCHHHHHHHhcCCCCcEEEECCCC---H--HHHHHHHHHHhcCCEEEEeC
Confidence 221122222333332 2379998754332 1 46789999999999888643
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.55 E-value=0.49 Score=45.55 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=26.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHh--------ccC---CCCcEEEEEeCCCC
Q 041517 156 PRVIIEVGSFLGASALHMANLT--------RQL---GLDSQILCIDDFRG 194 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~--------r~l---~~~~~V~~ID~~~~ 194 (327)
+-+|+|+||++|..|+.+...+ +.. ++.-+|+.-|.-..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~N 102 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSN 102 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCcc
Confidence 4679999999999999974321 111 24667777777543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.43 Score=44.39 Aligned_cols=97 Identities=18% Similarity=0.180 Sum_probs=57.9
Q ss_pred CCCEEEEEcCc--chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGSF--LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~--~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||-+|++ .|..++.+|+. . +.+|+++|.++.-.+.+++.. .. .+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~lg-----------------------a~-~~- 193 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQI---L--NFRLIAVTRNNKHTEELLRLG-----------------------AA-YV- 193 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHH---H--TCEEEEEESSSTTHHHHHHHT-----------------------CS-EE-
T ss_pred CCCEEEEeCCccHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHhCC-----------------------Cc-EE-
Confidence 35789999986 56666666664 3 569999999887666554421 10 00
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+.+.++ +..+|+|+--+.. ......++.|++||.++.--.
T Consensus 194 -~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 194 -IDTSTAPLYETVMELTNGIGADAAIDSIGG------PDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp -EETTTSCHHHHHHHHTTTSCEEEEEESSCH------HHHHHHHHTEEEEEEEEECCC
T ss_pred -EeCCcccHHHHHHHHhCCCCCcEEEECCCC------hhHHHHHHHhcCCCEEEEEee
Confidence 222222223333332 3479988764442 223445689999999887544
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.48 E-value=1 Score=42.53 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=54.2
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||-+|+|. |..++.+|++ . +.+|+++|.++.-.+.+++. |. +.+
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~---~--Ga~Vi~~~~~~~~~~~a~~l-----------------------Ga-~~v-- 242 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHA---M--GAHVVAFTTSEAKREAAKAL-----------------------GA-DEV-- 242 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---T--TCEEEEEESSGGGHHHHHHH-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHHc-----------------------CC-cEE--
Confidence 457899999853 5556666654 3 56799999877655544331 11 110
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+..... +.+......+|+||--.... ..++.+++.|++||.++.-
T Consensus 243 i~~~~~---~~~~~~~~g~Dvvid~~g~~-----~~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 243 VNSRNA---DEMAAHLKSFDFILNTVAAP-----HNLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp EETTCH---HHHHTTTTCEEEEEECCSSC-----CCHHHHHTTEEEEEEEEEC
T ss_pred eccccH---HHHHHhhcCCCEEEECCCCH-----HHHHHHHHHhccCCEEEEe
Confidence 111111 11222225699987544431 2357888999999988764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.02 E-value=0.21 Score=45.09 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=40.8
Q ss_pred HHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 145 AVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 145 ~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
.++..+++.. +...|||..||+|.+++...+. +.+++++|.++...+.+++
T Consensus 200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~------gr~~ig~e~~~~~~~~~~~ 252 (260)
T 1g60_A 200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL------GRNFIGCDMNAEYVNQANF 252 (260)
T ss_dssp HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc------CCeEEEEeCCHHHHHHHHH
Confidence 4666666543 4578999999999998887764 6899999999988877765
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.96 E-value=0.23 Score=44.86 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=37.7
Q ss_pred eEeeecchhhhhhhcC-CcEeEEEEcCCCCCC---------------cHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEWG-VVGDLIEIDAGHDFN---------------SAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l~-~~fDLIfIDa~h~~~---------------~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.++..||+.+.|..+. ++||+||+|---... -....++++.++|+|||+|++.
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3466889888887764 689999999542111 1234467778999999988765
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=90.89 E-value=0.78 Score=42.91 Aligned_cols=97 Identities=18% Similarity=0.126 Sum_probs=55.9
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||-+|+|. |..++.+|++ + +. +|+++|.++.-.+.+++. |.+ .+
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~---~--Ga~~Vi~~~~~~~~~~~a~~l-----------------------Ga~-~v- 220 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKA---M--GAAQVVVTDLSATRLSKAKEI-----------------------GAD-LV- 220 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---T--TCSEEEEEESCHHHHHHHHHT-----------------------TCS-EE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCCEEEEECCCHHHHHHHHHh-----------------------CCC-EE-
Confidence 457899999854 5566666664 3 44 899999876544444332 111 11
Q ss_pred ceEee---ecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFS---SGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~---~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+... ..+..+.+... +..+|+||--... . ..++.+++.|++||.++.-.
T Consensus 221 -i~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~---~--~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 221 -LQISKESPQEIARKVEGQLGCKPEVTIECTGA---E--ASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp -EECSSCCHHHHHHHHHHHHTSCCSEEEECSCC---H--HHHHHHHHHSCTTCEEEECS
T ss_pred -EcCcccccchHHHHHHHHhCCCCCEEEECCCC---h--HHHHHHHHHhcCCCEEEEEe
Confidence 2211 01111222221 2468998754432 1 45788899999999888643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=90.28 E-value=0.33 Score=45.41 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=56.4
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||-+|+|. |..++.+|++ .+ -.+|+++|..+.-.+.+++. |.+ .+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~---~G-a~~Vi~~~~~~~~~~~~~~l-----------------------Ga~-~v-- 215 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANH---LG-AGRIFAVGSRKHCCDIALEY-----------------------GAT-DI-- 215 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHT---TT-CSSEEEECCCHHHHHHHHHH-----------------------TCC-EE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cC-CcEEEEECCCHHHHHHHHHh-----------------------CCc-eE--
Confidence 457899999753 4555555553 33 23799999876544444432 111 11
Q ss_pred eEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+..+.+.++ +..+|+||--... + ..++.+++.|++||.++.-.
T Consensus 216 i~~~~~~~~~~v~~~t~g~g~D~v~d~~g~---~--~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 216 INYKNGDIVEQILKATDGKGVDKVVIAGGD---V--HTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp ECGGGSCHHHHHHHHTTTCCEEEEEECSSC---T--THHHHHHHHEEEEEEEEECC
T ss_pred EcCCCcCHHHHHHHHcCCCCCCEEEECCCC---h--HHHHHHHHHHhcCCEEEEec
Confidence 222223333333332 3469998743332 1 35788999999999888543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.27 E-value=0.37 Score=45.06 Aligned_cols=79 Identities=11% Similarity=0.026 Sum_probs=49.7
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCCC------CC---------cHHHHHHHHHccCCCCeEEEE-EcCCCCCC---
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGHD------FN---------SAWADINRAWRILRPGGVIFG-HDYFTAAD--- 293 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h~------~~---------~v~~dl~~~~~lL~pGGvIi~-dD~~~~~~--- 293 (327)
..+..||+.+.|..+ +++||+||+|---. |. .....++++.++|+|||.|++ .+..+...
T Consensus 15 ~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~~~~g~~~ 94 (323)
T 1boo_A 15 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGAYMKGVPA 94 (323)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCCEETTEEE
T ss_pred ceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCEecCCCcc
Confidence 677899999888766 47999999994321 11 234567888999999997765 33332110
Q ss_pred --chhHHHHHHHHHHHcCCeEE
Q 041517 294 --NRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 294 --~~GV~~Av~~f~~~~gl~v~ 313 (327)
.... +.+.++++..|+.+.
T Consensus 95 ~~~~~~-~~i~~~~~~~Gf~~~ 115 (323)
T 1boo_A 95 RSIYNF-RVLIRMIDEVGFFLA 115 (323)
T ss_dssp ECCHHH-HHHHHHHHTTCCEEE
T ss_pred cccchH-HHHHHHHHhCCCEEE
Confidence 1112 233345667787654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=90.06 E-value=0.29 Score=46.84 Aligned_cols=39 Identities=10% Similarity=0.014 Sum_probs=31.9
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A 199 (327)
..|||||.|.|..|..|++.. ...+|++||.++.+...-
T Consensus 60 ~~VlEIGPG~G~LT~~Ll~~~----~~~~vvavE~D~~l~~~L 98 (353)
T 1i4w_A 60 LKVLDLYPGVGIQSAIFYNKY----CPRQYSLLEKRSSLYKFL 98 (353)
T ss_dssp CEEEEESCTTCHHHHHHHHHH----CCSEEEEECCCHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHhhC----CCCEEEEEecCHHHHHHH
Confidence 689999999999999999842 146899999998765533
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=90.01 E-value=0.34 Score=45.49 Aligned_cols=53 Identities=23% Similarity=0.080 Sum_probs=38.7
Q ss_pred eEee-ecchhhhhhhcC-CcEeEEEEcCCCCCC------------cHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFS-SGSALTKLCEWG-VVGDLIEIDAGHDFN------------SAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~-~gda~~~L~~l~-~~fDLIfIDa~h~~~------------~v~~dl~~~~~lL~pGGvIi~d 286 (327)
..+. .||+.+.|..+. ++||+||+|---... .....+.++.++|+|||+|++.
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~ 105 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 105 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 5667 899999887764 689999999542111 2345567889999999977754
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.24 Score=47.47 Aligned_cols=39 Identities=21% Similarity=0.142 Sum_probs=26.5
Q ss_pred CCEEEEEcCcchHHHHHHHHH----hcc--------CCCCcEEEEEeCCCC
Q 041517 156 PRVIIEVGSFLGASALHMANL----TRQ--------LGLDSQILCIDDFRG 194 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a----~r~--------l~~~~~V~~ID~~~~ 194 (327)
+-+|+|+||.+|.+|+.+... ++. -.+.-.|+.-|.-..
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~N 102 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGN 102 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCch
Confidence 357999999999999875543 110 134567777777554
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.45 E-value=1.4 Score=40.95 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=55.2
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||-+|+|. |..++.+|++ + +.+|+++|.+++..+.+++. |.+ .+
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~---~--Ga~Vi~~~~~~~~~~~~~~l-----------------------Ga~-~~-- 216 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKA---Y--GAFVVCTARSPRRLEVAKNC-----------------------GAD-VT-- 216 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---T--TCEEEEEESCHHHHHHHHHT-----------------------TCS-EE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCEEEEEcCCHHHHHHHHHh-----------------------CCC-EE--
Confidence 457899999743 4555555553 3 45699999876544443321 211 11
Q ss_pred eEeee-cchhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSS-GSALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~-gda~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.... .+..+.+.+. +..+|+||--... . ..++.+++.|++||.++.--
T Consensus 217 ~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~---~--~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 217 LVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGN---E--KCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp EECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCC---H--HHHHHHHHHSCTTCEEEECS
T ss_pred EcCcccccHHHHHHHHhccccCCCCCEEEECCCC---H--HHHHHHHHHHhcCCEEEEEe
Confidence 22211 2222222221 3568998754432 1 45788899999999888643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=89.42 E-value=1.5 Score=40.59 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=60.0
Q ss_pred CCCEEEEEcCcchH-HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFLGA-SALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~-Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||=+|+|.+. .++.+|+. ++ +.+|+++|.+++-.+.+++. |.+ .+
T Consensus 163 ~g~~VlV~GaG~~g~~a~~~a~~---~~-g~~Vi~~~~~~~r~~~~~~~-----------------------Ga~-~~-- 212 (348)
T 4eez_A 163 PGDWQVIFGAGGLGNLAIQYAKN---VF-GAKVIAVDINQDKLNLAKKI-----------------------GAD-VT-- 212 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TS-CCEEEEEESCHHHHHHHHHT-----------------------TCS-EE--
T ss_pred CCCEEEEEcCCCccHHHHHHHHH---hC-CCEEEEEECcHHHhhhhhhc-----------------------CCe-EE--
Confidence 35688989986543 33344442 33 68999999976544444332 111 11
Q ss_pred eEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 234 VPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 234 V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+.+.++ +..+|.++.+... . ..++..+..|++||.++.--.
T Consensus 213 i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~---~--~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 213 INSGDVNPVDEIKKITGGLGVQSAIVCAVA---R--IAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp EEC-CCCHHHHHHHHTTSSCEEEEEECCSC---H--HHHHHHHHTEEEEEEEEECCC
T ss_pred EeCCCCCHHHHhhhhcCCCCceEEEEeccC---c--chhheeheeecCCceEEEEec
Confidence 333344444444443 3468888887654 2 568899999999998887544
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=89.40 E-value=0.61 Score=43.10 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=56.8
Q ss_pred cCCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh-hhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 154 VRPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR-DKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 154 ~~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A-~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
.+.++||-+|+ +.|..++.+|+. . +.+|+++|.+++-.+.+ ++. |. +.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~~~-----------------------g~-~~ 198 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARL---K--GCRVVGIAGGAEKCRFLVEEL-----------------------GF-DG 198 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHTT-----------------------CC-SE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHHHc-----------------------CC-CE
Confidence 34678999998 445556666653 3 56999999876544333 221 11 01
Q ss_pred ccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 231 VLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+ +.....+..+.+.+. ++.+|+|+.-+.. ..++.+++.|++||.++.-
T Consensus 199 ~--~~~~~~~~~~~~~~~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 199 A--IDYKNEDLAAGLKRECPKGIDVFFDNVGG------EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp E--EETTTSCHHHHHHHHCTTCEEEEEESSCH------HHHHHHHTTEEEEEEEEEC
T ss_pred E--EECCCHHHHHHHHHhcCCCceEEEECCCc------chHHHHHHHHhhCCEEEEE
Confidence 0 222222222333222 3579988765442 4688999999999988863
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=89.39 E-value=1.6 Score=40.73 Aligned_cols=95 Identities=18% Similarity=0.046 Sum_probs=54.1
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+|. |..++.+|++ + +.+|+++|.++.-.+.+++. |. +.+
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~---~--Ga~Vi~~~~~~~~~~~~~~l-----------------------Ga-~~v-- 227 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKA---M--GAETYVISRSSRKREDAMKM-----------------------GA-DHY-- 227 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---H--TCEEEEEESSSTTHHHHHHH-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---C--CCEEEEEcCCHHHHHHHHHc-----------------------CC-CEE--
Confidence 457999999832 4455555553 3 46899999988766655432 11 110
Q ss_pred eEeeec-chhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSG-SALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~g-da~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+..... +..+.+ .+.+|+|+.-...... ..++.+++.|++||.++.-
T Consensus 228 ~~~~~~~~~~~~~---~~~~D~vid~~g~~~~---~~~~~~~~~l~~~G~iv~~ 275 (360)
T 1piw_A 228 IATLEEGDWGEKY---FDTFDLIVVCASSLTD---IDFNIMPKAMKVGGRIVSI 275 (360)
T ss_dssp EEGGGTSCHHHHS---CSCEEEEEECCSCSTT---CCTTTGGGGEEEEEEEEEC
T ss_pred EcCcCchHHHHHh---hcCCCEEEECCCCCcH---HHHHHHHHHhcCCCEEEEe
Confidence 111111 212222 2469998754433001 2346778899999988753
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=89.25 E-value=0.69 Score=43.71 Aligned_cols=100 Identities=15% Similarity=0.191 Sum_probs=58.4
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
....+||=+|+|. |..++.+|++ ++ -.+|+++|.+++-.+.+++. |.+ .+
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~---~G-a~~Vi~~~~~~~~~~~a~~l-----------------------Ga~-~v- 231 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARL---AG-ATTVILSTRQATKRRLAEEV-----------------------GAT-AT- 231 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH---TT-CSEEEEECSCHHHHHHHHHH-----------------------TCS-EE-
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---cC-CCEEEEECCCHHHHHHHHHc-----------------------CCC-EE-
Confidence 3457888899853 4555555654 33 23899999976655444432 111 10
Q ss_pred ceEeeecchhhhhhh---c-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKLCE---W-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L~~---l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+.+.+ + ++.+|+||--... . ..++.+++.|++||.++.-..
T Consensus 232 -i~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~---~--~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 232 -VDPSAGDVVEAIAGPVGLVPGGVDVVIECAGV---A--ETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp -ECTTSSCHHHHHHSTTSSSTTCEEEEEECSCC---H--HHHHHHHHHEEEEEEEEECSC
T ss_pred -ECCCCcCHHHHHHhhhhccCCCCCEEEECCCC---H--HHHHHHHHHhccCCEEEEEec
Confidence 22222333333333 2 3479998753332 2 568899999999999887543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.12 E-value=2.1 Score=39.77 Aligned_cols=89 Identities=10% Similarity=-0.013 Sum_probs=55.3
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||-+|+|. |..++.+|++ . +.+|+++|.++...+.+++. |. +.
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~---~--Ga~Vi~~~~~~~~~~~~~~l-----------------------Ga-~~--- 223 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVA---M--GAEVSVFARNEHKKQDALSM-----------------------GV-KH--- 223 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHH---T--TCEEEEECSSSTTHHHHHHT-----------------------TC-SE---
T ss_pred CCCEEEEECCcHHHHHHHHHHHH---C--CCeEEEEeCCHHHHHHHHhc-----------------------CC-Ce---
Confidence 457899899854 5555566654 4 46899999988766655442 21 11
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+ + .+ .+.+ ...+|+||--.... ..++.+++.|++||.++.-.
T Consensus 224 v-~--~~-~~~~---~~~~D~vid~~g~~-----~~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 224 F-Y--TD-PKQC---KEELDFIISTIPTH-----YDLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp E-E--SS-GGGC---CSCEEEEEECCCSC-----CCHHHHHTTEEEEEEEEECC
T ss_pred e-c--CC-HHHH---hcCCCEEEECCCcH-----HHHHHHHHHHhcCCEEEEEC
Confidence 1 1 11 1222 22699987544332 24688899999999888753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=88.65 E-value=1 Score=41.83 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=58.6
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||=+|+|. |..++.+|++ ++ +.+|+++|.+++-.+.+++. |.+ .+
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~---~g-~~~Vi~~~~~~~~~~~~~~l-----------------------Ga~-~~-- 220 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRA---VS-AARVIAVDLDDDRLALAREV-----------------------GAD-AA-- 220 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---HC-CCEEEEEESCHHHHHHHHHT-----------------------TCS-EE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cC-CCEEEEEcCCHHHHHHHHHc-----------------------CCC-EE--
Confidence 457899999854 5566666664 33 57999999987655544432 211 11
Q ss_pred eEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.. ..+..+.+.++ +..+|+||--... + ..++.+++.|++||.++.-.
T Consensus 221 i~~-~~~~~~~v~~~t~g~g~d~v~d~~G~---~--~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 221 VKS-GAGAADAIRELTGGQGATAVFDFVGA---Q--STIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EEC-STTHHHHHHHHHGGGCEEEEEESSCC---H--HHHHHHHHHEEEEEEEEECS
T ss_pred EcC-CCcHHHHHHHHhCCCCCeEEEECCCC---H--HHHHHHHHHHhcCCEEEEEC
Confidence 211 11222323222 2479988754432 1 46889999999999888754
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.38 E-value=1.3 Score=41.82 Aligned_cols=99 Identities=16% Similarity=-0.000 Sum_probs=58.4
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||=+|+|. |..++.+|++ ++ -.+|+++|.+++-.+.+++.. .+ .+
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~---~G-a~~Vi~~~~~~~~~~~a~~lG-----------------------a~-~v-- 242 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKT---AG-ASRIIGIDIDSKKYETAKKFG-----------------------VN-EF-- 242 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH---HT-CSCEEEECSCTTHHHHHHTTT-----------------------CC-EE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cC-CCeEEEEcCCHHHHHHHHHcC-----------------------Cc-EE--
Confidence 356888899842 5555666654 33 238999999887666665432 10 00
Q ss_pred eEee--ecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEEEcC
Q 041517 234 VPFS--SGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFGHDY 288 (327)
Q Consensus 234 V~~~--~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~dD~ 288 (327)
+... ..+..+.+.++ ++.+|+||--... + ..++.+++.|++| |.++.--.
T Consensus 243 i~~~~~~~~~~~~i~~~~~gg~D~vid~~g~---~--~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 243 VNPKDHDKPIQEVIVDLTDGGVDYSFECIGN---V--SVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp ECGGGCSSCHHHHHHHHTTSCBSEEEECSCC---H--HHHHHHHHTBCTTTCEEEECSC
T ss_pred EccccCchhHHHHHHHhcCCCCCEEEECCCC---H--HHHHHHHHHhhccCCEEEEEcc
Confidence 1111 11222333332 3479998754332 2 4678999999996 98887543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=88.22 E-value=0.61 Score=43.02 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=57.0
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||=+|. +.|..++.+|+. . +.+|+++|.+++-.+.+++. |. +.+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~~-----------------------Ga-~~~- 189 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKA---L--GAKLIGTVSSPEKAAHAKAL-----------------------GA-WET- 189 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHH---H--TCEEEEEESSHHHHHHHHHH-----------------------TC-SEE-
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHHc-----------------------CC-CEE-
Confidence 3578999883 456666666664 3 56899999866544333321 11 110
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+.+.+. +..+|+|+--... ..++.+++.|++||.++.--.
T Consensus 190 -~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 190 -IDYSHEDVAKRVLELTDGKKCPVVYDGVGQ------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp -EETTTSCHHHHHHHHTTTCCEEEEEESSCG------GGHHHHHTTEEEEEEEEECCC
T ss_pred -EeCCCccHHHHHHHHhCCCCceEEEECCCh------HHHHHHHHHhcCCCEEEEEec
Confidence 222222333333332 3579988765442 356888999999998887543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=88.18 E-value=2.1 Score=40.16 Aligned_cols=98 Identities=17% Similarity=0.045 Sum_probs=56.1
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+|. |..++.+|++ ++ -.+|+++|.++.-.+.+++.. . +.+
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~---~G-a~~Vi~~~~~~~~~~~a~~lG-----------------------a-~~v-- 240 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKA---AG-ASRIIGVGTHKDKFPKAIELG-----------------------A-TEC-- 240 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---HT-CSEEEEECSCGGGHHHHHHTT-----------------------C-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cC-CCeEEEECCCHHHHHHHHHcC-----------------------C-cEE--
Confidence 357899999743 5555566654 33 238999998876655554421 1 110
Q ss_pred eEeee--cchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEEEc
Q 041517 234 VPFSS--GSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFGHD 287 (327)
Q Consensus 234 V~~~~--gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~dD 287 (327)
+.... .+..+.+.+. ++.+|+||--... . ..++.+++.|++| |.++.--
T Consensus 241 i~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~---~--~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 241 LNPKDYDKPIYEVICEKTNGGVDYAVECAGR---I--ETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp ECGGGCSSCHHHHHHHHTTSCBSEEEECSCC---H--HHHHHHHHTBCTTTCEEEECC
T ss_pred EecccccchHHHHHHHHhCCCCCEEEECCCC---H--HHHHHHHHHHhcCCCEEEEEc
Confidence 11111 1122223222 2378988743332 1 4678999999999 9887643
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=0.84 Score=42.08 Aligned_cols=95 Identities=12% Similarity=0.038 Sum_probs=54.6
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..++||-+|+ +.|..++.+++. . +.+|+++|.+++..+.+++. |. +.+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~---~--G~~V~~~~~~~~~~~~~~~~-----------------------g~-~~~- 194 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKL---K--GCKVVGAAGSDEKIAYLKQI-----------------------GF-DAA- 194 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHT-----------------------TC-SEE-
T ss_pred CCCEEEEecCCCcHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHhc-----------------------CC-cEE-
Confidence 4578999997 444445555543 3 56999999865433332211 11 010
Q ss_pred ceEeee-cchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSS-GSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~-gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.... .+..+.+... ++.+|+++.-+.. ..++.+++.|++||.+++-
T Consensus 195 -~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 195 -FNYKTVNSLEEALKKASPDGYDCYFDNVGG------EFLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp -EETTSCSCHHHHHHHHCTTCEEEEEESSCH------HHHHHHHTTEEEEEEEEEC
T ss_pred -EecCCHHHHHHHHHHHhCCCCeEEEECCCh------HHHHHHHHHHhcCCEEEEE
Confidence 22111 2222223222 2479998876552 3578899999999988764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.06 E-value=2.1 Score=40.13 Aligned_cols=97 Identities=15% Similarity=0.002 Sum_probs=55.6
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||-+|+|. |..++.+|++ + +. +|+++|.++.-.+.+++.. . +.+
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~---~--Ga~~Vi~~~~~~~~~~~~~~lG-----------------------a-~~v- 241 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHS---A--GAKRIIAVDLNPDKFEKAKVFG-----------------------A-TDF- 241 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---T--TCSEEEEECSCGGGHHHHHHTT-----------------------C-CEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCCEEEEEcCCHHHHHHHHHhC-----------------------C-ceE-
Confidence 357899999743 4455555554 3 44 8999998877665554421 1 010
Q ss_pred ceEeee--cchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEEEc
Q 041517 233 PVPFSS--GSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFGHD 287 (327)
Q Consensus 233 ~V~~~~--gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~dD 287 (327)
+.... .+..+.+.+. ++.+|+||--... . ..++.+++.|++| |.++.-.
T Consensus 242 -i~~~~~~~~~~~~~~~~~~~g~D~vid~~g~---~--~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 242 -VNPNDHSEPISQVLSKMTNGGVDFSLECVGN---V--GVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp -ECGGGCSSCHHHHHHHHHTSCBSEEEECSCC---H--HHHHHHHHTBCTTTCEEEECS
T ss_pred -EeccccchhHHHHHHHHhCCCCCEEEECCCC---H--HHHHHHHHHhhcCCcEEEEEc
Confidence 11111 1122222222 2478988743332 1 4678999999999 9887643
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=2.1 Score=40.22 Aligned_cols=97 Identities=18% Similarity=0.011 Sum_probs=55.1
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+|. |..++.+|++ ++ -.+|+++|.+++-.+.+++. |. +.+
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~---~G-a~~Vi~~~~~~~~~~~a~~l-----------------------Ga-~~v-- 244 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKI---AG-ASRIIAIDINGEKFPKAKAL-----------------------GA-TDC-- 244 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TT-CSEEEEECSCGGGHHHHHHT-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cC-CCeEEEEcCCHHHHHHHHHh-----------------------CC-cEE--
Confidence 357899999742 4455555553 43 23899999987665555432 11 010
Q ss_pred eEeee--cchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEEE
Q 041517 234 VPFSS--GSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFGH 286 (327)
Q Consensus 234 V~~~~--gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~d 286 (327)
+.... .+..+.+.+. ++.+|+||--... . ..++.+++.|++| |.++.-
T Consensus 245 i~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~---~--~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 245 LNPRELDKPVQDVITELTAGGVDYSLDCAGT---A--QTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp ECGGGCSSCHHHHHHHHHTSCBSEEEESSCC---H--HHHHHHHHTBCTTTCEEEEC
T ss_pred EccccccchHHHHHHHHhCCCccEEEECCCC---H--HHHHHHHHHhhcCCCEEEEE
Confidence 11111 1122222222 2378988643332 1 4678999999999 988764
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.87 E-value=1.6 Score=41.44 Aligned_cols=102 Identities=15% Similarity=0.038 Sum_probs=57.9
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+|. |..++.+|++ ++ -.+|+++|.+++-.+.+++. |.. .
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~---~G-a~~Vi~~~~~~~~~~~a~~l-----------------------Ga~-~--- 233 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARL---LG-AAVVIVGDLNPARLAHAKAQ-----------------------GFE-I--- 233 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TT-CSEEEEEESCHHHHHHHHHT-----------------------TCE-E---
T ss_pred CCCEEEEECCcHHHHHHHHHHHH---CC-CCeEEEEcCCHHHHHHHHHc-----------------------CCc-E---
Confidence 457899999754 5566666664 33 23799999976555444332 210 0
Q ss_pred eEeeecc-hhhhhhhc--CCcEeEEEEcCCCCC----------CcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGS-ALTKLCEW--GVVGDLIEIDAGHDF----------NSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gd-a~~~L~~l--~~~fDLIfIDa~h~~----------~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+ ..+.+.++ +..+|+||--..... ......++.+++.|++||.+++--
T Consensus 234 i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 234 ADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 2222222 12233332 246999875433321 001146889999999999888643
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=87.77 E-value=0.55 Score=44.17 Aligned_cols=97 Identities=14% Similarity=0.072 Sum_probs=55.5
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||=+|+|. |..++.+|++ . +.+|+++|.++.-.+.+++. |. +.+
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~---~--Ga~Vi~~~~~~~~~~~~~~l-----------------------Ga-~~v-- 237 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKA---T--GAEVIVTSSSREKLDRAFAL-----------------------GA-DHG-- 237 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHH---T--TCEEEEEESCHHHHHHHHHH-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCEEEEEecCchhHHHHHHc-----------------------CC-CEE--
Confidence 357899999653 4555555553 4 56999999876544433321 21 111
Q ss_pred eEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 234 VPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 234 V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+.+.+. +..+|+|+--... ..++.+++.|++||.++.-..
T Consensus 238 i~~~~~~~~~~v~~~~~g~g~D~vid~~g~------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 238 INRLEEDWVERVYALTGDRGADHILEIAGG------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp EETTTSCHHHHHHHHHTTCCEEEEEEETTS------SCHHHHHHHEEEEEEEEEECC
T ss_pred EcCCcccHHHHHHHHhCCCCceEEEECCCh------HHHHHHHHHhhcCCEEEEEec
Confidence 221112222333222 3479988755442 246788899999998886543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.66 E-value=1.9 Score=39.77 Aligned_cols=101 Identities=21% Similarity=0.136 Sum_probs=57.3
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
.+..+||=+|+|. |..++.+|++ ++ ...++++|.++.-.+.+++.. .+..
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~---~G-~~~vi~~~~~~~k~~~a~~lG-----------------------a~~~-- 209 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVA---LG-AKSVTAIDISSEKLALAKSFG-----------------------AMQT-- 209 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHH---TT-CSEEEEEESCHHHHHHHHHTT-----------------------CSEE--
T ss_pred CCCCEEEEECCCCcchHHHHHHHH---cC-CcEEEEEechHHHHHHHHHcC-----------------------CeEE--
Confidence 3467899999853 3334444543 44 457889999876555555432 1100
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.....+..+....+ +..+|+|+-.... + ..++.+++.|++||.+++--..
T Consensus 210 -i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~---~--~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 210 -FNSSEMSAPQMQSVLRELRFNQLILETAGV---P--QTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp -EETTTSCHHHHHHHHGGGCSSEEEEECSCS---H--HHHHHHHHHCCTTCEEEECCCC
T ss_pred -EeCCCCCHHHHHHhhcccCCcccccccccc---c--chhhhhhheecCCeEEEEEecc
Confidence 222222222322222 2457776654432 2 5678899999999988875543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=87.59 E-value=1.9 Score=39.07 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=54.5
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||-+|+ +.|..++.+|+. . +.+|+++|.+++..+.+++. |. +.+
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~~-----------------------ga-~~~- 174 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARA---M--GLRVLAAASRPEKLALPLAL-----------------------GA-EEA- 174 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---T--TCEEEEEESSGGGSHHHHHT-----------------------TC-SEE-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHhc-----------------------CC-CEE-
Confidence 4578999997 446666666664 3 56999999876654444321 11 110
Q ss_pred ceEeee-cchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSS-GSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~-gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.... .+..+ .. ..+|+|+- ... ..++.+++.|++||.++.-
T Consensus 175 -~~~~~~~~~~~---~~-~~~d~vid-~g~------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 175 -ATYAEVPERAK---AW-GGLDLVLE-VRG------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp -EEGGGHHHHHH---HT-TSEEEEEE-CSC------TTHHHHHTTEEEEEEEEEC
T ss_pred -EECCcchhHHH---Hh-cCceEEEE-CCH------HHHHHHHHhhccCCEEEEE
Confidence 11111 11112 22 46999987 654 2468889999999988753
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=87.51 E-value=0.5 Score=43.70 Aligned_cols=95 Identities=11% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||-+|+ +.|..++.+|+. . +.+|+++|.++.-.+.+++. |. +.+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~~-----------------------ga-~~~- 197 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKM---K--GAHTIAVASTDEKLKIAKEY-----------------------GA-EYL- 197 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHT-----------------------TC-SEE-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHHc-----------------------CC-cEE-
Confidence 4578999994 445555555553 3 56899999865544333321 11 110
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+..+.+.+. +..+|+|+.-... ..++.+++.|++||.++.-
T Consensus 198 -~~~~~~~~~~~~~~~~~~~g~D~vid~~g~------~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 198 -INASKEDILRQVLKFTNGKGVDASFDSVGK------DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp -EETTTSCHHHHHHHHTTTSCEEEEEECCGG------GGHHHHHHHEEEEEEEEEC
T ss_pred -EeCCCchHHHHHHHHhCCCCceEEEECCCh------HHHHHHHHHhccCCEEEEE
Confidence 222222333333332 3579998765442 3578888999999988874
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=87.22 E-value=2.5 Score=39.49 Aligned_cols=98 Identities=17% Similarity=0.055 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+|. |..++.+|++ ++ -.+|+++|.++.-.+.+++. |. +.+
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~---~G-a~~Vi~~~~~~~~~~~~~~l-----------------------Ga-~~v-- 239 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKV---AG-ASRIIGVDINKDKFARAKEF-----------------------GA-TEC-- 239 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---HT-CSEEEEECSCGGGHHHHHHH-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---cC-CCeEEEEcCCHHHHHHHHHc-----------------------CC-ceE--
Confidence 357899999743 4445555554 33 23899999887665555432 11 110
Q ss_pred eEeee--cchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEEEc
Q 041517 234 VPFSS--GSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFGHD 287 (327)
Q Consensus 234 V~~~~--gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~dD 287 (327)
+.... .+..+.+.+. ++.+|+||--... . ..++.+++.|++| |.++.--
T Consensus 240 i~~~~~~~~~~~~v~~~~~~g~D~vid~~g~---~--~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 240 INPQDFSKPIQEVLIEMTDGGVDYSFECIGN---V--KVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp ECGGGCSSCHHHHHHHHTTSCBSEEEECSCC---H--HHHHHHHHTBCTTTCEEEECS
T ss_pred eccccccccHHHHHHHHhCCCCCEEEECCCc---H--HHHHHHHHhhccCCcEEEEEe
Confidence 11111 1122223222 2478988643332 1 4678999999999 9887643
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=87.04 E-value=2.4 Score=39.77 Aligned_cols=97 Identities=14% Similarity=-0.024 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||-+|+|. |..++.+|++ + +. +|+++|.+++-.+.+++.. . +.+
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~---~--Ga~~Vi~~~~~~~~~~~~~~lG-----------------------a-~~v- 240 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKA---A--GAARIIGVDINKDKFAKAKEVG-----------------------A-TEC- 240 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---T--TCSEEEEECSCGGGHHHHHHTT-----------------------C-SEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCCeEEEEcCCHHHHHHHHHhC-----------------------C-ceE-
Confidence 357899999743 4455555553 3 44 8999998876665554321 1 010
Q ss_pred ceEeee--cchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEEEc
Q 041517 233 PVPFSS--GSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFGHD 287 (327)
Q Consensus 233 ~V~~~~--gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~dD 287 (327)
+.... .+..+.+.+. ++.+|+||--... . ..++.+++.|++| |.++.--
T Consensus 241 -i~~~~~~~~~~~~~~~~~~~g~D~vid~~g~---~--~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 241 -VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGR---L--DTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp -ECGGGCSSCHHHHHHHHTTSCBSEEEECSCC---H--HHHHHHHHHBCTTTCEEEECS
T ss_pred -ecccccchhHHHHHHHHhCCCCcEEEECCCC---H--HHHHHHHHHhhcCCcEEEEec
Confidence 11111 1122223222 2478988643332 1 4678899999999 9887643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=86.87 E-value=1.2 Score=41.34 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=56.6
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||-+|+ +.|..++.+|+. . +.+|++++.+++-.+.+++. |. +.+
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~~-----------------------ga-~~v- 208 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKG---M--GAKVIAVVNRTAATEFVKSV-----------------------GA-DIV- 208 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHH---T--TCEEEEEESSGGGHHHHHHH-----------------------TC-SEE-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHhc-----------------------CC-cEE-
Confidence 3578999996 456666666664 3 56999999877655444331 11 111
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+... .+..+.+.+. +..+|+||--... ..++.+++.|++||.++.-
T Consensus 209 -~~~~-~~~~~~v~~~~~~~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 209 -LPLE-EGWAKAVREATGGAGVDMVVDPIGG------PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp -EESS-TTHHHHHHHHTTTSCEEEEEESCC--------CHHHHHHTEEEEEEEEEC
T ss_pred -ecCc-hhHHHHHHHHhCCCCceEEEECCch------hHHHHHHHhhcCCCEEEEE
Confidence 2221 2223333332 2479998765553 2467889999999988864
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=86.75 E-value=0.87 Score=42.32 Aligned_cols=98 Identities=18% Similarity=0.161 Sum_probs=55.4
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+|. |..++.+|++ +.++.+|+++|.++.-.+.+++. |. +.+
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~---~~~Ga~Vi~~~~~~~~~~~~~~l-----------------------Ga-~~v-- 220 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKA---LMKNITIVGISRSKKHRDFALEL-----------------------GA-DYV-- 220 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHH---HCTTCEEEEECSCHHHHHHHHHH-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---hcCCCEEEEEeCCHHHHHHHHHh-----------------------CC-CEE--
Confidence 568999999842 4445555553 42256899999876544444331 11 111
Q ss_pred eEeee-cchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSS-GSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~-gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.... .+..+.+.. +..+|+||--... . ..++.+++.|++||.++.--
T Consensus 221 i~~~~~~~~~~~~~~-g~g~D~vid~~g~---~--~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 221 SEMKDAESLINKLTD-GLGASIAIDLVGT---E--ETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp ECHHHHHHHHHHHHT-TCCEEEEEESSCC---H--HHHHHHHHHEEEEEEEEECC
T ss_pred eccccchHHHHHhhc-CCCccEEEECCCC---h--HHHHHHHHHhhcCCEEEEeC
Confidence 11111 111111221 3479998754432 1 46788999999999888643
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=86.45 E-value=2.6 Score=39.32 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=56.1
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcE-EEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQ-ILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~-V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||=+|+|. |..++.+|++ + +.+ |+++|.+++-.+.+++..+ .+
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~---~--Ga~~Vi~~~~~~~~~~~a~~l~~-------------------------~~- 227 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKA---A--GACPLVITDIDEGRLKFAKEICP-------------------------EV- 227 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH---T--TCCSEEEEESCHHHHHHHHHHCT-------------------------TC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCCEEEEECCCHHHHHHHHHhch-------------------------hc-
Confidence 457888899844 5555556654 3 444 9999997765554443210 10
Q ss_pred ceEee-----ecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFS-----SGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~-----~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+... ..+..+.+.++ +..+|+||--... + ..++.+++.|++||.++.--.
T Consensus 228 -~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~---~--~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 228 -VTHKVERLSAEESAKKIVESFGGIEPAVALECTGV---E--SSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp -EEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCC---H--HHHHHHHHHSCTTCEEEECCC
T ss_pred -ccccccccchHHHHHHHHHHhCCCCCCEEEECCCC---h--HHHHHHHHHhcCCCEEEEEcc
Confidence 1111 11222222222 3579998754432 1 467889999999999887543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=86.43 E-value=1.5 Score=41.10 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=57.0
Q ss_pred cCCCEEEEEc--CcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 154 VRPRVIIEVG--SFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 154 ~~p~~VLEIG--t~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
....+||-+| .+.|..++.+|+. . +.+|+++|.+++-.+.+++. |. +.+
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~---~--Ga~Vi~~~~~~~~~~~~~~~-----------------------Ga-~~~ 212 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKK---A--KCHVIGTCSSDEKSAFLKSL-----------------------GC-DRP 212 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHT-----------------------TC-SEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHh---C--CCEEEEEECCHHHHHHHHHc-----------------------CC-cEE
Confidence 3457899999 4556667777764 3 56899999865433333221 11 110
Q ss_pred cceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 232 LPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+..+.+... +..+|+|+--... ..++.+++.|++||.++.--
T Consensus 213 --~~~~~~~~~~~~~~~~~~g~D~vid~~g~------~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 213 --INYKTEPVGTVLKQEYPEGVDVVYESVGG------AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp --EETTTSCHHHHHHHHCTTCEEEEEECSCT------HHHHHHHHHEEEEEEEEECC
T ss_pred --EecCChhHHHHHHHhcCCCCCEEEECCCH------HHHHHHHHHHhcCCEEEEEe
Confidence 111112222333222 3469998754442 46788999999999888643
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.74 E-value=1.4 Score=42.04 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=26.1
Q ss_pred CCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 156 PRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 156 p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
..+||=+|+|. |..++.+|++ ++ -.+|+++|.++.-.+.+++
T Consensus 214 g~~VlV~GaG~vG~~aiqlak~---~G-a~~Vi~~~~~~~~~~~~~~ 256 (404)
T 3ip1_A 214 GDNVVILGGGPIGLAAVAILKH---AG-ASKVILSEPSEVRRNLAKE 256 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---TT-CSEEEEECSCHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHH---cC-CCEEEEECCCHHHHHHHHH
Confidence 46888899743 4444455553 43 2389999987765554443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=85.18 E-value=0.59 Score=55.26 Aligned_cols=107 Identities=14% Similarity=0.014 Sum_probs=48.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCC-CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLG-LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~-~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..+|||||.|+|..+..+...+...+ ...+++-.|+++++.+.+++.++ .+. +
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~----------------~~d----------i 1294 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLE----------------QLH----------V 1294 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHH----------------HHT----------E
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhh----------------hcc----------c
Confidence 35899999999998877777542111 02467788999888776655321 110 2
Q ss_pred EeeecchhhhhhhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
....-+..+.-......||+|+.. .-|.-......+..+.++|+|||.+++...
T Consensus 1295 ~~~~~d~~~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1295 TQGQWDPANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp EEECCCSSCCCC-----CCEEEEECC--------------------CCEEEEEEC
T ss_pred ccccccccccccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 210000000000012358999854 334333445678899999999999998764
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=84.95 E-value=1.2 Score=41.14 Aligned_cols=95 Identities=14% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..++||-+|+ +.|..++.+++. . +.+|+++|.+++..+.+++. |. +.+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~---~--G~~Vi~~~~~~~~~~~~~~~-----------------------g~-~~~- 194 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARH---L--GATVIGTVSTEEKAETARKL-----------------------GC-HHT- 194 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHH-----------------------TC-SEE-
T ss_pred CCCEEEEECCccHHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHHc-----------------------CC-CEE-
Confidence 3578999995 556666666653 3 56999999875433322221 11 110
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+..+.+.+. +..+|+++.-+.. ..++.+++.|++||.++.-
T Consensus 195 -~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 195 -INYSTQDFAEVVREITGGKGVDVVYDSIGK------DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp -EETTTSCHHHHHHHHHTTCCEEEEEECSCT------TTHHHHHHTEEEEEEEEEC
T ss_pred -EECCCHHHHHHHHHHhCCCCCeEEEECCcH------HHHHHHHHhhccCCEEEEE
Confidence 222122222323222 3469998865553 3468889999999988764
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=84.89 E-value=1.6 Score=40.39 Aligned_cols=97 Identities=18% Similarity=0.072 Sum_probs=54.9
Q ss_pred CCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||-+|+| .|..++.+|+. . +.+|+++|.++.-.+.+++. |. +.+
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~l-----------------------Ga-~~~-- 212 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKA---M--GLNVVAVDIGDEKLELAKEL-----------------------GA-DLV-- 212 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHH---T--TCEEEEECSCHHHHHHHHHT-----------------------TC-SEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHC-----------------------CC-CEE--
Confidence 45789999984 24555555553 4 46999999876544433321 11 110
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+..+.+....+.+|+|+.-... . ..++.+++.|++||.++.-.
T Consensus 213 ~d~~~~~~~~~~~~~~~~~d~vid~~g~---~--~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 213 VNPLKEDAAKFMKEKVGGVHAAVVTAVS---K--PAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp ECTTTSCHHHHHHHHHSSEEEEEESSCC---H--HHHHHHHHHEEEEEEEEECC
T ss_pred ecCCCccHHHHHHHHhCCCCEEEECCCC---H--HHHHHHHHHhhcCCEEEEec
Confidence 1111122222222211469998765442 1 46788899999999887643
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.71 E-value=1.2 Score=40.99 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=54.5
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..++||-+|. +.|..++.+++. . +.+|+++|.+++..+.+++. |.. .+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~---~--G~~V~~~~~~~~~~~~~~~~-----------------------g~~-~~- 189 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKA---L--GAKLIGTVGTAQKAQSALKA-----------------------GAW-QV- 189 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---H--TCEEEEEESSHHHHHHHHHH-----------------------TCS-EE-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHHc-----------------------CCC-EE-
Confidence 3578999994 445555555553 3 56899999865433322221 110 10
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+..+.+.+. +..+|+++.-+. . ..++.+++.|++||.++.--
T Consensus 190 -~~~~~~~~~~~~~~~~~~~~~D~vi~~~g---~---~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 190 -INYREEDLVERLKEITGGKKVRVVYDSVG---R---DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp -EETTTSCHHHHHHHHTTTCCEEEEEECSC---G---GGHHHHHHTEEEEEEEEECC
T ss_pred -EECCCccHHHHHHHHhCCCCceEEEECCc---h---HHHHHHHHHhcCCCEEEEEe
Confidence 211122222222222 246999886655 1 45788899999999887643
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=83.98 E-value=5 Score=37.37 Aligned_cols=96 Identities=11% Similarity=-0.012 Sum_probs=52.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+||-+|+ |..+...++.++.. +.+|+++|.+++-.+.+++ ..|. +.+ +
T Consensus 180 ~g~~VlV~Ga--G~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~----------------------~lGa-~~v--i 230 (357)
T 2cf5_A 180 PGLRGGILGL--GGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ----------------------DLGA-DDY--V 230 (357)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT----------------------TSCC-SCE--E
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----------------------HcCC-cee--e
Confidence 4578999996 33444434433334 4689999998765444331 0111 111 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
.. .+ .+.+.+....+|+||--.... ..++.+++.|++||.++.--
T Consensus 231 ~~--~~-~~~~~~~~~g~D~vid~~g~~-----~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 231 IG--SD-QAKMSELADSLDYVIDTVPVH-----HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp ET--TC-HHHHHHSTTTEEEEEECCCSC-----CCSHHHHTTEEEEEEEEECS
T ss_pred cc--cc-HHHHHHhcCCCCEEEECCCCh-----HHHHHHHHHhccCCEEEEeC
Confidence 11 11 122333334699886544332 13467889999999888643
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=83.69 E-value=2.4 Score=41.57 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=38.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCC-CcEEEEEeCCCCChhhhhh
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGL-DSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~-~~~V~~ID~~~~~~~~A~~ 201 (327)
.++-.|+|+|.|+|..+.-+.+.++..++ ..+++.||+++.+.+..++
T Consensus 136 ~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~ 184 (432)
T 4f3n_A 136 SGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRE 184 (432)
T ss_dssp HTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHH
T ss_pred cCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHH
Confidence 34679999999999999999998876543 4589999999998765443
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=83.46 E-value=2.2 Score=38.95 Aligned_cols=86 Identities=12% Similarity=-0.041 Sum_probs=50.1
Q ss_pred CCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||=+|+| .|..++.+|++ . +.+|++++ +++-.+.+++. |. +.+
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~---~--Ga~Vi~~~-~~~~~~~~~~l-----------------------Ga-~~v-- 189 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNN---A--GYVVDLVS-ASLSQALAAKR-----------------------GV-RHL-- 189 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH---H--TCEEEEEC-SSCCHHHHHHH-----------------------TE-EEE--
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCEEEEEE-ChhhHHHHHHc-----------------------CC-CEE--
Confidence 35789999993 25556666664 3 45999999 77665554432 21 111
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+ . + .+ .++..+|+||--... ..++.+++.|++||.++.-
T Consensus 190 ~---~-d-~~---~v~~g~Dvv~d~~g~------~~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 190 Y---R-E-PS---QVTQKYFAIFDAVNS------QNAAALVPSLKANGHIICI 228 (315)
T ss_dssp E---S-S-GG---GCCSCEEEEECC-------------TTGGGEEEEEEEEEE
T ss_pred E---c-C-HH---HhCCCccEEEECCCc------hhHHHHHHHhcCCCEEEEE
Confidence 1 1 2 22 226789987633222 1236678999999987764
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.45 E-value=4 Score=37.77 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..++||-+|+ +.|..++.+++. . +.+|+++|.++...+.+++. |. +.+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~---~--Ga~V~~~~~~~~~~~~~~~~-----------------------g~-~~~- 218 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKA---M--GYRVLGIDGGEGKEELFRSI-----------------------GG-EVF- 218 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH---T--TCEEEEEECSTTHHHHHHHT-----------------------TC-CEE-
T ss_pred CCCEEEEECCCchHHHHHHHHHHH---C--CCcEEEEcCCHHHHHHHHHc-----------------------CC-ceE-
Confidence 3578999998 445555555553 3 56999999877644443321 11 010
Q ss_pred ceEee-ecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFS-SGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~-~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+... ..+..+.+... ++.+|+|+.-... ...++.+++.|++||.|+.-.
T Consensus 219 -~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~-----~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 219 -IDFTKEKDIVGAVLKATDGGAHGVINVSVS-----EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp -EETTTCSCHHHHHHHHHTSCEEEEEECSSC-----HHHHHHHTTSEEEEEEEEECC
T ss_pred -EecCccHhHHHHHHHHhCCCCCEEEECCCc-----HHHHHHHHHHHhcCCEEEEEe
Confidence 1111 11222222221 2269998765542 146789999999999888643
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.28 E-value=2.5 Score=40.22 Aligned_cols=137 Identities=13% Similarity=0.169 Sum_probs=83.7
Q ss_pred hccCCchHH-HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 136 RIKGWGSYG-AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 136 ~~~gw~~~g-~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
..+.|-..- .+|..+......++||-||-..|..+++++.. .++.+.. .+.. ++
T Consensus 18 ~l~a~da~d~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~--------~~~~~~d--s~~~--~~------------- 72 (375)
T 4dcm_A 18 PLQAWEAADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEH--------KPYSIGD--SYIS--EL------------- 72 (375)
T ss_dssp SCCSCCHHHHHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGG--------CCEEEES--CHHH--HH-------------
T ss_pred CCCccchHHHHHHHhhhhccCCCCEEEECCCCCHHHHhhccC--------CceEEEh--HHHH--HH-------------
Confidence 567883333 34555443324468999999999999988742 2345521 1211 11
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCc
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADN 294 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~ 294 (327)
...+|+...++.... |.+.. .+......+|+|.+--.+.......-|..+...|++|+.|++..-..
T Consensus 73 --~~~~n~~~~~~~~~~--~~~~~-----~~~~~~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g~~~---- 139 (375)
T 4dcm_A 73 --ATRENLRLNGIDESS--VKFLD-----STADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKAR---- 139 (375)
T ss_dssp --HHHHHHHHTTCCGGG--SEEEE-----TTSCCCSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEEEGG----
T ss_pred --HHHHHHHHcCCCccc--eEecc-----cccccccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEeccc----
Confidence 123466655553221 33321 12233567999999888776667777899999999999887654333
Q ss_pred hhHHHHHHHHHHHcCC
Q 041517 295 RGVRRAVNLFAKINGL 310 (327)
Q Consensus 295 ~GV~~Av~~f~~~~gl 310 (327)
.|++...+.|.+..+.
T Consensus 140 ~~~~~~~~~l~~~~~~ 155 (375)
T 4dcm_A 140 DIHTSTLELFEKVLGP 155 (375)
T ss_dssp GCCHHHHHHHHHHTCC
T ss_pred chHHHHHHHHHhhcCc
Confidence 4567777777666554
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=82.58 E-value=2 Score=39.84 Aligned_cols=97 Identities=16% Similarity=0.108 Sum_probs=54.9
Q ss_pred CCCEEEEEcCc--chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGSF--LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~--~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..++||-+|++ .|..++.+++. .+ +.+|+++|.+++..+.+++. |. +.+
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~---~~-Ga~Vi~~~~~~~~~~~~~~~-----------------------g~-~~~- 220 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKA---VS-GATIIGVDVREEAVEAAKRA-----------------------GA-DYV- 220 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH---HT-CCEEEEEESSHHHHHHHHHH-----------------------TC-SEE-
T ss_pred CCCEEEEECCCccHHHHHHHHHHH---cC-CCeEEEEcCCHHHHHHHHHh-----------------------CC-CEE-
Confidence 45789999986 34444455543 31 46899999876443333221 11 110
Q ss_pred ceEeeecchhhhhhhc-C-CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEW-G-VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l-~-~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+..+.+..+ + +.+|+|+.-+.. . ..++.+++.|++||.++.-
T Consensus 221 -~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~---~--~~~~~~~~~l~~~G~iv~~ 270 (347)
T 1jvb_A 221 -INASMQDPLAEIRRITESKGVDAVIDLNNS---E--KTLSVYPKALAKQGKYVMV 270 (347)
T ss_dssp -EETTTSCHHHHHHHHTTTSCEEEEEESCCC---H--HHHTTGGGGEEEEEEEEEC
T ss_pred -ecCCCccHHHHHHHHhcCCCceEEEECCCC---H--HHHHHHHHHHhcCCEEEEE
Confidence 111112222222222 2 479998865553 1 4678889999999988764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=1.4 Score=40.81 Aligned_cols=96 Identities=8% Similarity=0.014 Sum_probs=54.7
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..++||-+|+ +.|..++.+|+. . +.+|+++|.+++..+.+++ . .|. +.+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~---~--G~~V~~~~~~~~~~~~~~~-------------------~---~g~-~~~- 205 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKM---M--GCYVVGSAGSKEKVDLLKT-------------------K---FGF-DDA- 205 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHH-------------------T---SCC-SEE-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHH-------------------H---cCC-ceE-
Confidence 4578999997 455555555553 3 5689999987544333321 0 111 010
Q ss_pred ceEeeec-chhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSG-SALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~g-da~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+..... +..+.+... +..+|+|+.-... ..++.+++.|++||.++.-
T Consensus 206 -~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~------~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 206 -FNYKEESDLTAALKRCFPNGIDIYFENVGG------KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp -EETTSCSCSHHHHHHHCTTCEEEEEESSCH------HHHHHHHTTEEEEEEEEEC
T ss_pred -EecCCHHHHHHHHHHHhCCCCcEEEECCCH------HHHHHHHHHHhcCCEEEEE
Confidence 111111 122222222 2469998765442 4688999999999988763
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=82.37 E-value=5 Score=37.31 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=54.3
Q ss_pred CEEEEEcCcchHHHHHH-HHHh-ccCCCCcE-EEEEeCCCC---ChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 157 RVIIEVGSFLGASALHM-ANLT-RQLGLDSQ-ILCIDDFRG---WPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~l-A~a~-r~l~~~~~-V~~ID~~~~---~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
.+||=+|+ |..++.. ++.+ +.+ +.+ |+++|.+++ -.+.+++. |. +.
T Consensus 174 ~~VlV~Ga--G~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~l-----------------------Ga-~~ 225 (357)
T 2b5w_A 174 SSAFVLGN--GSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEEL-----------------------DA-TY 225 (357)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHHT-----------------------TC-EE
T ss_pred CEEEEECC--CHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHHc-----------------------CC-cc
Confidence 79999997 4444444 4444 444 444 999999876 45544432 11 00
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+ +.++++.+|+||--... . ..++.+++.|++||.++.--.
T Consensus 226 ---v~~~~~~~~~-i~~~~gg~Dvvid~~g~---~--~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 226 ---VDSRQTPVED-VPDVYEQMDFIYEATGF---P--KHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp ---EETTTSCGGG-HHHHSCCEEEEEECSCC---H--HHHHHHHHHEEEEEEEEECCC
T ss_pred ---cCCCccCHHH-HHHhCCCCCEEEECCCC---h--HHHHHHHHHHhcCCEEEEEeC
Confidence 1111112222 22223379998643332 1 467889999999998886443
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.19 E-value=1.9 Score=40.77 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=53.2
Q ss_pred CCEEEEEcCcc-hHHHHHHHHHhccCCCC-cEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSFL-GASALHMANLTRQLGLD-SQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~~-G~Sal~lA~a~r~l~~~-~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
..+||-+|+|. |..++.+|++ + + .+|+++|.+++-.+.+++. |. +.+
T Consensus 196 g~~VlV~GaG~vG~~aiqlak~---~--Ga~~Vi~~~~~~~~~~~~~~l-----------------------Ga-~~v-- 244 (380)
T 1vj0_A 196 GKTVVIQGAGPLGLFGVVIARS---L--GAENVIVIAGSPNRLKLAEEI-----------------------GA-DLT-- 244 (380)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---T--TBSEEEEEESCHHHHHHHHHT-----------------------TC-SEE--
T ss_pred CCEEEEECcCHHHHHHHHHHHH---c--CCceEEEEcCCHHHHHHHHHc-----------------------CC-cEE--
Confidence 47899999532 4445555553 3 5 5999999876544444332 11 111
Q ss_pred eEee---ecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFS---SGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~---~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+... ..+..+.+.+. +..+|+||--... . ..++.+++.|++||.++.-
T Consensus 245 i~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~--~---~~~~~~~~~l~~~G~iv~~ 297 (380)
T 1vj0_A 245 LNRRETSVEERRKAIMDITHGRGADFILEATGD--S---RALLEGSELLRRGGFYSVA 297 (380)
T ss_dssp EETTTSCHHHHHHHHHHHTTTSCEEEEEECSSC--T---THHHHHHHHEEEEEEEEEC
T ss_pred EeccccCcchHHHHHHHHhCCCCCcEEEECCCC--H---HHHHHHHHHHhcCCEEEEE
Confidence 1111 11112223222 2369998754432 1 3578889999999988864
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=82.14 E-value=1.8 Score=39.67 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=48.8
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCC----CCCc-----------------HHHHHHHHHccCCCCeEEEEE--cCC
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGH----DFNS-----------------AWADINRAWRILRPGGVIFGH--DYF 289 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h----~~~~-----------------v~~dl~~~~~lL~pGGvIi~d--D~~ 289 (327)
+.+..||+.+.++.+ +++||+|+.|--- .+.. ...-++++.++|+|||.|++. |..
T Consensus 22 ~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d~~ 101 (297)
T 2zig_A 22 HRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGDVA 101 (297)
T ss_dssp EEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCEE
T ss_pred CEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence 788999999988766 4799999998432 1100 112356788999999977543 221
Q ss_pred CCCCchh------HHHHHHHHHHHcCCeEE
Q 041517 290 TAADNRG------VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 290 ~~~~~~G------V~~Av~~f~~~~gl~v~ 313 (327)
......| ....+..++++.|+.+.
T Consensus 102 ~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~ 131 (297)
T 2zig_A 102 VARRRFGRHLVFPLHADIQVRCRKLGFDNL 131 (297)
T ss_dssp EECC----EEEECHHHHHHHHHHHTTCEEE
T ss_pred cccccCCcccccccHHHHHHHHHHcCCeee
Confidence 1000001 33456667777787654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=81.93 E-value=1.4 Score=41.15 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=55.1
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||-+|. +.|..++.+|+. . +.+|+++|.+++-.+.+++. |.. .+
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~l-----------------------Ga~-~~- 216 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARA---F--GAEVYATAGSTGKCEACERL-----------------------GAK-RG- 216 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHH-----------------------TCS-EE-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHH---c--CCEEEEEeCCHHHHHHHHhc-----------------------CCC-EE-
Confidence 3578998853 345556666653 3 56899999876544433321 111 10
Q ss_pred ceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+..+.+... +..+|+|+.-... ..++.+++.|++||.++.--
T Consensus 217 -~~~~~~~~~~~~~~~~~~g~Dvvid~~g~------~~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 217 -INYRSEDFAAVIKAETGQGVDIILDMIGA------AYFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp -EETTTSCHHHHHHHHHSSCEEEEEESCCG------GGHHHHHHTEEEEEEEEECC
T ss_pred -EeCCchHHHHHHHHHhCCCceEEEECCCH------HHHHHHHHHhccCCEEEEEE
Confidence 222222222322221 4679988765543 25678899999999887643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.64 E-value=1.4 Score=41.30 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=53.9
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..++||-+|+ +.|..++.+++. . +.+|+++|.+++..+.+++. |. +.+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~---~--Ga~Vi~~~~~~~~~~~~~~~-----------------------ga-~~~- 219 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARA---Y--GLKILGTAGTEEGQKIVLQN-----------------------GA-HEV- 219 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHT-----------------------TC-SEE-
T ss_pred CcCEEEEECCCChHHHHHHHHHHH---C--CCEEEEEeCChhHHHHHHHc-----------------------CC-CEE-
Confidence 3578999997 445555555553 3 56899999876433333221 11 010
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+..+.+.+. +..+|+|+.-+.. ..++.+++.|++||.++.-
T Consensus 220 -~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~------~~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 220 -FNHREVNYIDKIKKYVGEKGIDIIIEMLAN------VNLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp -EETTSTTHHHHHHHHHCTTCEEEEEESCHH------HHHHHHHHHEEEEEEEEEC
T ss_pred -EeCCCchHHHHHHHHcCCCCcEEEEECCCh------HHHHHHHHhccCCCEEEEE
Confidence 111122222222221 2479998765442 3577889999999988764
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=81.59 E-value=1.9 Score=39.87 Aligned_cols=95 Identities=19% Similarity=0.139 Sum_probs=53.0
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCc-EEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDS-QILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~-~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||-+|+|. |..++.+|+. . +. +|+++|.+++..+.+++. . +.+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~---~--Ga~~Vi~~~~~~~~~~~~~~l-a------------------------~~v- 212 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRA---S--GAGPILVSDPNPYRLAFARPY-A------------------------DRL- 212 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH---T--TCCSEEEECSCHHHHGGGTTT-C------------------------SEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---c--CCCEEEEECCCHHHHHHHHHh-H------------------------Hhc-
Confidence 567899999832 4445555553 3 45 899999876544433321 0 010
Q ss_pred ceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+..+.+.+. +..+|+|+--... . ..++.+++.|++||.++.-
T Consensus 213 -~~~~~~~~~~~~~~~~~~g~D~vid~~g~---~--~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 213 -VNPLEEDLLEVVRRVTGSGVEVLLEFSGN---E--AAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp -ECTTTSCHHHHHHHHHSSCEEEEEECSCC---H--HHHHHHHHHEEEEEEEEEC
T ss_pred -cCcCccCHHHHHHHhcCCCCCEEEECCCC---H--HHHHHHHHHHhcCCEEEEE
Confidence 111111112222221 4569998754332 1 4678889999999988764
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.38 E-value=2.1 Score=39.67 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=56.3
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...+||-+|+ +.|..++.+++. . +.+|+++|.+++..+.+++. |. +.+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~---~--G~~Vi~~~~~~~~~~~~~~~-----------------------ga-~~~- 215 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKL---F--GARVIATAGSEDKLRRAKAL-----------------------GA-DET- 215 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHH-----------------------TC-SEE-
T ss_pred CCCEEEEECCCchHHHHHHHHHHH---C--CCEEEEEeCCHHHHHHHHhc-----------------------CC-CEE-
Confidence 3578999998 566677777764 3 56899999875443333221 11 111
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+..+.+.+. +..+|+|+.-+. . ..++.+++.|++||.++.-
T Consensus 216 -~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-~-----~~~~~~~~~l~~~G~~v~~ 264 (343)
T 2eih_A 216 -VNYTHPDWPKEVRRLTGGKGADKVVDHTG-A-----LYFEGVIKATANGGRIAIA 264 (343)
T ss_dssp -EETTSTTHHHHHHHHTTTTCEEEEEESSC-S-----SSHHHHHHHEEEEEEEEES
T ss_pred -EcCCcccHHHHHHHHhCCCCceEEEECCC-H-----HHHHHHHHhhccCCEEEEE
Confidence 222122222223222 247999886655 2 2467888999999988764
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=81.37 E-value=4.4 Score=38.04 Aligned_cols=42 Identities=14% Similarity=0.038 Sum_probs=31.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCC-cEEEEEeCCCCChhhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLD-SQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~-~~V~~ID~~~~~~~~A~~ 201 (327)
+.+|+|+.||.|..++.+.++ +-. ..++++|.++...+..+.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~----G~~~~~v~~~E~d~~a~~~~~~ 44 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRES----CIPAQVVAAIDVNTVANEVYKY 44 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH----TCSEEEEEEECCCHHHHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHC----CCCceEEEEEeCCHHHHHHHHH
Confidence 458999999999999998885 211 369999998766554444
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.66 E-value=3 Score=38.21 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=52.8
Q ss_pred EEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 158 VIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 158 ~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+||-+|+ +.|..++.+|+. . +.+|++++.+++-.+.+++. |. +.+ +.
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~---~--Ga~vi~~~~~~~~~~~~~~l-----------------------Ga-~~~--i~ 200 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAK---R--GYTVEASTGKAAEHDYLRVL-----------------------GA-KEV--LA 200 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHH---T--TCCEEEEESCTTCHHHHHHT-----------------------TC-SEE--EE
T ss_pred eEEEecCCCHHHHHHHHHHHH---C--CCEEEEEECCHHHHHHHHHc-----------------------CC-cEE--Ee
Confidence 7999997 556666667764 3 46799999987766555432 11 111 11
Q ss_pred eeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 236 FSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 236 ~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
....+ .+.+... +..+|+||--... ..++.+++.|++||.++.--
T Consensus 201 ~~~~~-~~~~~~~~~~~~d~vid~~g~------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 201 REDVM-AERIRPLDKQRWAAAVDPVGG------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp CC----------CCSCCEEEEEECSTT------TTHHHHHHTEEEEEEEEECS
T ss_pred cCCcH-HHHHHHhcCCcccEEEECCcH------HHHHHHHHhhccCCEEEEEe
Confidence 11111 1111222 2469988654432 24678899999999888643
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.51 E-value=2.8 Score=39.33 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=55.6
Q ss_pred CCEEEEEc-C-cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVG-S-FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIG-t-~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
..+||=+| + +.|..++.+|+++ + +.+|+++|..++-.+.+++. |. +.+
T Consensus 172 g~~VlV~Ga~G~vG~~a~qlak~~---~-g~~Vi~~~~~~~~~~~~~~l-----------------------Ga-d~v-- 221 (363)
T 4dvj_A 172 APAILIVGGAGGVGSIAVQIARQR---T-DLTVIATASRPETQEWVKSL-----------------------GA-HHV-- 221 (363)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHH---C-CSEEEEECSSHHHHHHHHHT-----------------------TC-SEE--
T ss_pred CCEEEEECCCCHHHHHHHHHHHHh---c-CCEEEEEeCCHHHHHHHHHc-----------------------CC-CEE--
Confidence 35788888 4 3466677777642 2 67999999876544443331 21 111
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.. ..+..+.+.++ ++.+|+|+--.. ....++.+++.|++||.++.-
T Consensus 222 i~~-~~~~~~~v~~~~~~g~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 222 IDH-SKPLAAEVAALGLGAPAFVFSTTH-----TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp ECT-TSCHHHHHHTTCSCCEEEEEECSC-----HHHHHHHHHHHSCTTCEEEEC
T ss_pred EeC-CCCHHHHHHHhcCCCceEEEECCC-----chhhHHHHHHHhcCCCEEEEE
Confidence 111 11222333333 357998765333 124678999999999988864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 327 | ||||
| d2bm8a1 | 232 | c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI | 6e-08 | |
| d2cl5a1 | 214 | c.66.1.1 (A:3-216) Catechol O-methyltransferase, C | 2e-05 |
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Score = 50.5 bits (120), Expect = 6e-08
Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 26/164 (15%)
Query: 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKE 204
AV+ +++ ++RPR I+E+G + G S +LT+ +G+D Q++ ID
Sbjct: 70 AVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSR--------- 120
Query: 205 IPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN 264
I + ++++ T + LI ID H
Sbjct: 121 ----------------CQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANT 164
Query: 265 SAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308
+L G D +
Sbjct: 165 FNIMKWA-VDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFR 207
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.5 bits (99), Expect = 2e-05
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 23/159 (14%)
Query: 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFK 203
G + +I + P +++E+G++ G SA+ MA R L +++L ++ + +
Sbjct: 45 GQIMDAVIREYSPSLVLELGAYCGYSAVRMA---RLLQPGARLLTMEMNPDYAAITQQML 101
Query: 204 EIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF 263
+ V + Q++I Q K D++ +D D
Sbjct: 102 NFAGLQDKVTILNGASQDLIPQL-----------------KKKYDVDTLDMVFLDHWKDR 144
Query: 264 NSAWADINRAWRILRPGGVIFGHDYF---TAADNRGVRR 299
+ +LR G V+ + T VR
Sbjct: 145 YLPDTLLLEKCGLLRKGTVLLADNVIVPGTPDFLAYVRG 183
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.92 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.92 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.88 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 99.67 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.5 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.49 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.48 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.43 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.42 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.41 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.41 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.4 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.4 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.38 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.36 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.34 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.31 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.3 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.29 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.27 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.25 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.24 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.22 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.21 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.2 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.19 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.19 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.17 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.15 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.12 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.12 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.12 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.11 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.1 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.1 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.08 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.08 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.08 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.05 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.04 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.04 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.03 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.01 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.0 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.0 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.0 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.99 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.98 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.98 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.95 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.85 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.84 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.84 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.82 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.78 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.78 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.78 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.78 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.78 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.77 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.75 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.74 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.73 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.7 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.63 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.63 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.56 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.53 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 98.53 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.52 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.51 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.5 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.47 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.42 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.37 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.28 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.13 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.94 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.85 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.81 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.8 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.76 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.73 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.73 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.73 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.71 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.53 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.51 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.43 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.36 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.27 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.18 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 96.97 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.95 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.76 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.63 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.37 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.17 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.91 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 95.77 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.27 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.15 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.13 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.94 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.9 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.88 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.32 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.31 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 94.18 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.0 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.14 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.7 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 92.34 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.53 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 91.47 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 90.87 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 90.79 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 90.11 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 89.77 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 88.87 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 88.12 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 88.0 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 87.82 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.29 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 85.61 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 85.25 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.48 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 82.98 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 81.62 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.13 |
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.4e-25 Score=197.93 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=125.1
Q ss_pred chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 141 ~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
+++|++|..|++..+|++||||||++|+||+|||++ ++++++|++||.++.+.+.|++
T Consensus 45 ~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~a---l~~~g~i~tie~~~~~~~~A~~------------------- 102 (219)
T d2avda1 45 CEQAQLLANLARLIQAKKALDLGTFTGYSALALALA---LPADGRVVTCEVDAQPPELGRP------------------- 102 (219)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTT---SCTTCEEEEEESCSHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHh---CCCCceEEEEeechhHHHHHHH-------------------
Confidence 368999999999999999999999999999999996 6779999999999999888876
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhc-----CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC--
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEW-----GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD-- 293 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l-----~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-- 293 (327)
++..+|..++ +++..|++.+.++.+ ..+|||||+|++++.+ ..+++.++++|+|||+||+||+.|...
T Consensus 103 ~~~~ag~~~~---i~~~~Gda~e~l~~~~~~~~~~~fD~ifiD~dk~~y--~~~~~~~~~lL~~GGvii~Dn~l~~G~v~ 177 (219)
T d2avda1 103 LWRQAEAEHK---IDLRLKPALETLDELLAAGEAGTFDVAVVDADKENC--SAYYERCLQLLRPGGILAVLRVLWRGKVL 177 (219)
T ss_dssp HHHHTTCTTT---EEEEESCHHHHHHHHHHTTCTTCEEEEEECSCSTTH--HHHHHHHHHHEEEEEEEEEECCSGGGGGG
T ss_pred HHHhcCccce---EEEEEeehhhcchhhhhhcccCCccEEEEeCCHHHH--HHHHHHHHHHhcCCcEEEEeCCcccCccc
Confidence 4555677666 999999999988665 4789999999999664 489999999999999999999998321
Q ss_pred --------chhHHHHHHHHHHHcCCe--EEEccceEE
Q 041517 294 --------NRGVRRAVNLFAKINGLK--VQIDGQHWV 320 (327)
Q Consensus 294 --------~~GV~~Av~~f~~~~gl~--v~~~gq~w~ 320 (327)
..+++++.+.+.++.++. +.+.|..-.
T Consensus 178 ~~~~~d~~~~~ir~~~~~i~~d~r~~~~llPigdGl~ 214 (219)
T d2avda1 178 QPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDGLT 214 (219)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHCTTEEEEEECSTTCEE
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEEeecCCeeE
Confidence 123566666666666665 445555443
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.92 E-value=1.5e-24 Score=196.03 Aligned_cols=156 Identities=21% Similarity=0.171 Sum_probs=125.3
Q ss_pred chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 141 ~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
+.+|+||..|++..+|++||||||++||||++||++ ++++++|+++|.++.+.+.|++
T Consensus 45 ~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~a---l~~~g~v~tie~~~~~~~~A~~------------------- 102 (227)
T d1susa1 45 ADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALA---IPEDGKILAMDINKENYELGLP------------------- 102 (227)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHH---SCTTCEEEEEESCCHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhh---CCCCcEEEEEeccchhHHHHHH-------------------
Confidence 367999999999999999999999999999999996 6779999999999999888877
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhc------CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC-
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEW------GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD- 293 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l------~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~- 293 (327)
++...|..++ |++..|++.+.|+.+ .++|||||||++|.++. .+++.++++|+|||+||+||+.|...
T Consensus 103 ~~~~~g~~~~---i~~~~g~a~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~--~~~e~~~~ll~~gGiii~DNvl~~G~v 177 (227)
T d1susa1 103 VIKKAGVDHK---IDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYL--NYHKRLIDLVKVGGVIGYDNTLWNGSV 177 (227)
T ss_dssp HHHHTTCGGG---EEEEESCHHHHHHHHHHCGGGTTCBSEEEECSCSTTHH--HHHHHHHHHBCTTCCEEEETTTGGGGG
T ss_pred HHHHhccccc---eeeeehHHHHHHHHHHhccccCCceeEEEeccchhhhH--HHHHHHHhhcCCCcEEEEccCCCCCcc
Confidence 4455666666 999999999998875 46899999999997654 99999999999999999999998321
Q ss_pred -------c----hh----HHHHHHHHHHHcCCe--EEEccceEEEec
Q 041517 294 -------N----RG----VRRAVNLFAKINGLK--VQIDGQHWVIHS 323 (327)
Q Consensus 294 -------~----~G----V~~Av~~f~~~~gl~--v~~~gq~w~i~~ 323 (327)
. ++ ++++.+.+.++.+++ +.+.|..-.|-+
T Consensus 178 ~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~llPigDGl~i~~ 224 (227)
T d1susa1 178 VAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICR 224 (227)
T ss_dssp GCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEEECSTTCEEEEC
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEEeecCCeeEEEE
Confidence 1 11 333333444455554 667777666543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=4.9e-23 Score=184.21 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=110.2
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
++|++|..|++..+|++||||||++|+||++||++ ++++++|++||.++.+.+.+++ +
T Consensus 43 ~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~a---l~~~g~v~sid~~~~~~~~a~~-------------------~ 100 (214)
T d2cl5a1 43 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARL---LQPGARLLTMEMNPDYAAITQQ-------------------M 100 (214)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTT---CCTTCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHh---CCCccEEEEEeccHHHHHHHHH-------------------H
Confidence 67999999999999999999999999999999986 5678999999999988887765 5
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcC-----CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWG-----VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~-----~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+...|+.++ |++..|++.+.|+.+. .+||+||+|++|+.+....++.+++++|+|||+||+||+.|
T Consensus 101 ~~~~gl~~~---i~l~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 101 LNFAGLQDK---VTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp HHHHTCGGG---EEEEESCHHHHGGGHHHHSCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred HHHcCCCcc---ceeeeccccccccchhhcccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 556677666 9999999999887752 68999999999988777778899999999999999999998
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.67 E-value=1.5e-16 Score=143.41 Aligned_cols=142 Identities=19% Similarity=0.237 Sum_probs=103.3
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.+-.+++.|+...+|++||||||+.|+|++++|..++.++.+++|++||+++.........
T Consensus 67 ~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~------------------- 127 (232)
T d2bm8a1 67 DTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD------------------- 127 (232)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG-------------------
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhcc-------------------
Confidence 4456889999999999999999999999999999988888899999999987644322110
Q ss_pred HhhhccCCcccceEeeecchhh--hhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHH
Q 041517 222 VIYQNAIDSVLPVPFSSGSALT--KLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVR 298 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~--~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~ 298 (327)
..+ |.+..|++.+ .+..+ ...+|+||||++|.++.+..++. +.++|++||++|++|.... ......
T Consensus 128 ------~~~---I~~i~gDs~~~~~~~~l~~~~~dlIfID~~H~~~~v~~~~~-~~~lLk~GG~iIveD~i~~-~~~~~~ 196 (232)
T d2bm8a1 128 ------MEN---ITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWA-VDHLLEEGDYFIIEDMIPY-WYRYAP 196 (232)
T ss_dssp ------CTT---EEEEECCSSCSGGGGGGSSSCSSEEEEESSCSSHHHHHHHH-HHHTCCTTCEEEECSCHHH-HHHHCH
T ss_pred ------ccc---eeeeecccccHHHHHHHHhcCCCEEEEcCCcchHHHHHHHH-HhcccCcCCEEEEEcCCcc-ccccCc
Confidence 112 7777776532 33333 35689999999999999888885 5799999999999998631 111223
Q ss_pred HHHHHHHHHcCCeEE
Q 041517 299 RAVNLFAKINGLKVQ 313 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~ 313 (327)
+.+.+......-.+.
T Consensus 197 ~~~~e~~~~~~~~~~ 211 (232)
T d2bm8a1 197 QLFSEYLGAFRDVLS 211 (232)
T ss_dssp HHHHHHHHTTTTTEE
T ss_pred hHHHHHHhhhccEEE
Confidence 455555555544444
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.4e-14 Score=129.44 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=105.1
Q ss_pred cCCCChHHHHHHHH---HhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhcC-CCEEEEEcCcchHHHHHH
Q 041517 98 DSVPPQLVRQTIID---RIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKVR-PRVIIEVGSFLGASALHM 173 (327)
Q Consensus 98 ~~~~~~~v~~~~l~---~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~~-p~~VLEIGt~~G~Sal~l 173 (327)
..+.++.+.+++.. ..|-..++|.+.+.... ....+..-...+.+|+.|....+ ..+|||||||+||+|..|
T Consensus 19 g~i~~~~v~~a~~~vpRe~Fvp~~aY~D~~l~i~----~~~~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~l 94 (224)
T d1i1na_ 19 GIIKTDKVFEVMLATDRSHYAKCNPYMDSPQSIG----FQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACF 94 (224)
T ss_dssp TSCCSHHHHHHHHTSCGGGTCSSCTTSSSCEEEE----TTEEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHH
T ss_pred CCCCCHHHHHHHHhCCHHHcCCcccCCCCCcccc----chhhhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Confidence 45667777777764 34444456777654320 00111111134667777754444 469999999999999999
Q ss_pred HHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEe
Q 041517 174 ANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGD 253 (327)
Q Consensus 174 A~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fD 253 (327)
|+. .++.++|++||..+++.+.|+++.+ ...+.|+.. + .+.+..+|+.+..+. ..+||
T Consensus 95 a~l---~~~~g~V~~ie~~~~l~~~a~~~l~-----------~~~~~~~~~----~---~~~~~~gD~~~~~~~-~~~fD 152 (224)
T d1i1na_ 95 ARM---VGCTGKVIGIDHIKELVDDSVNNVR-----------KDDPTLLSS----G---RVQLVVGDGRMGYAE-EAPYD 152 (224)
T ss_dssp HHH---HCTTCEEEEEESCHHHHHHHHHHHH-----------HHCTHHHHT----S---SEEEEESCGGGCCGG-GCCEE
T ss_pred HHH---hCCCceEEEEcCCHHHHHHHHHhcc-----------ccCcccccc----c---ceEEEEeecccccch-hhhhh
Confidence 996 5778999999999999988876431 000112111 1 277888887765443 47899
Q ss_pred EEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 254 LIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 254 LIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.|++++....-+ +.+++.|+|||+||+
T Consensus 153 ~I~~~~~~~~ip-----~~l~~~LkpGG~LV~ 179 (224)
T d1i1na_ 153 AIHVGAAAPVVP-----QALIDQLKPGGRLIL 179 (224)
T ss_dssp EEEECSBBSSCC-----HHHHHTEEEEEEEEE
T ss_pred hhhhhcchhhcC-----HHHHhhcCCCcEEEE
Confidence 999998865544 568899999999987
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.49 E-value=1e-13 Score=119.47 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=97.9
Q ss_pred HHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc
Q 041517 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN 226 (327)
Q Consensus 147 L~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g 226 (327)
+-.+++..+..+|||||||+|..++.+|+. ..+|++||.++.+.+.+++ |+...|
T Consensus 25 il~~l~~~~g~~VLDiGcGsG~~s~~lA~~------~~~V~avD~~~~~l~~a~~-------------------n~~~~g 79 (186)
T d1l3ia_ 25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGR------VRRVYAIDRNPEAISTTEM-------------------NLQRHG 79 (186)
T ss_dssp HHHHHCCCTTCEEEEESCTTSHHHHHHHTT------SSEEEEEESCHHHHHHHHH-------------------HHHHTT
T ss_pred HHHhcCCCCCCEEEEEECCeEccccccccc------ceEEEEecCCHHHHHHHHH-------------------HHHHcC
Confidence 333445556789999999999999998863 5699999999999998877 555666
Q ss_pred cCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 227 AIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 227 ~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
+.++ |++..+++.+.+.. ...||+|++++... .....++.+.++|+|||.+++..+.. ....+.. ++.+
T Consensus 80 l~~~---v~~~~gda~~~~~~-~~~~D~v~~~~~~~--~~~~~~~~~~~~LkpgG~lvi~~~~~----e~~~~~~-~~l~ 148 (186)
T d1l3ia_ 80 LGDN---VTLMEGDAPEALCK-IPDIDIAVVGGSGG--ELQEILRIIKDKLKPGGRIIVTAILL----ETKFEAM-ECLR 148 (186)
T ss_dssp CCTT---EEEEESCHHHHHTT-SCCEEEEEESCCTT--CHHHHHHHHHHTEEEEEEEEEEECBH----HHHHHHH-HHHH
T ss_pred CCcc---eEEEECchhhcccc-cCCcCEEEEeCccc--cchHHHHHHHHHhCcCCEEEEEeecc----ccHHHHH-HHHH
Confidence 6666 89999999887544 47899999998753 34578999999999999999887653 3444443 3444
Q ss_pred HcCCe
Q 041517 307 INGLK 311 (327)
Q Consensus 307 ~~gl~ 311 (327)
..++.
T Consensus 149 ~~~~~ 153 (186)
T d1l3ia_ 149 DLGFD 153 (186)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 45543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=7.6e-14 Score=127.75 Aligned_cols=150 Identities=15% Similarity=0.113 Sum_probs=110.6
Q ss_pred chHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 141 GSYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 141 ~~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
+....++-.++...+..+|||+|||+|+.|+.||++ ++++|+|+++|.++++.+.|+++.+
T Consensus 82 pkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~---vgp~G~V~~~d~~~~~~~~Ar~n~~---------------- 142 (264)
T d1i9ga_ 82 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRA---VGPAGQVISYEQRADHAEHARRNVS---------------- 142 (264)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---HCTTSEEEEECSCHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHh---hCCCcEEEEecCCHHHHHHHHHhhh----------------
Confidence 344455555666667789999999999999999996 6889999999999999998887431
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHH
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRA 300 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~A 300 (327)
+.. .+..++ +.+..+|..+. ...+..||.||+|. +.++..++.+.+.|||||.+++.. |....+.+.
T Consensus 143 ~~~-~~~~~n---v~~~~~d~~~~-~~~~~~fDaV~ldl----p~P~~~l~~~~~~LkpGG~lv~~~----P~i~Qv~~~ 209 (264)
T d1i9ga_ 143 GCY-GQPPDN---WRLVVSDLADS-ELPDGSVDRAVLDM----LAPWEVLDAVSRLLVAGGVLMVYV----ATVTQLSRI 209 (264)
T ss_dssp HHH-TSCCTT---EEEECSCGGGC-CCCTTCEEEEEEES----SCGGGGHHHHHHHEEEEEEEEEEE----SSHHHHHHH
T ss_pred hhc-cCCCce---EEEEecccccc-cccCCCcceEEEec----CCHHHHHHHHHhccCCCCEEEEEe----CccChHHHH
Confidence 111 112223 88888887663 22358999999985 445689999999999999998733 556678899
Q ss_pred HHHHHHHcCC-e---EEEccceEEEe
Q 041517 301 VNLFAKINGL-K---VQIDGQHWVIH 322 (327)
Q Consensus 301 v~~f~~~~gl-~---v~~~gq~w~i~ 322 (327)
++.+...+++ . +......|-+.
T Consensus 210 ~~~l~~~~~f~~i~~~E~l~R~~~v~ 235 (264)
T d1i9ga_ 210 VEALRAKQCWTEPRAWETLQRGWNVV 235 (264)
T ss_dssp HHHHHHHSSBCCCEEECCCCCCEEEE
T ss_pred HHHHHHcCCeecceEEEEEEEEEEec
Confidence 9998777664 2 33455567654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.43 E-value=2.7e-13 Score=119.96 Aligned_cols=123 Identities=15% Similarity=0.222 Sum_probs=91.1
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+|-..+...+..+|||||||+|..+..|++. ..+|++||++++|.+.|++. ....
T Consensus 7 ~l~~~~~~~~~~rILDiGcGtG~~~~~la~~------~~~v~gvD~S~~~l~~A~~~-------------------~~~~ 61 (234)
T d1xxla_ 7 LMIKTAECRAEHRVLDIGAGAGHTALAFSPY------VQECIGVDATKEMVEVASSF-------------------AQEK 61 (234)
T ss_dssp HHHHHHTCCTTCEEEEESCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHHH-------------------HHHH
T ss_pred HHHHHhCCCCCCEEEEeCCcCcHHHHHHHHh------CCeEEEEeCChhhhhhhhhh-------------------hccc
Confidence 4444455545689999999999999999874 47899999999999888763 2222
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRR 299 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~ 299 (327)
+. ++ +.+..+++.+ ++..+++||+|+.-.. |-.+.....++++.++|+|||++++.++.. +..+....
T Consensus 62 ~~-~~---~~~~~~d~~~-~~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~-~~~~~~~~ 130 (234)
T d1xxla_ 62 GV-EN---VRFQQGTAES-LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA-PEDPVLDE 130 (234)
T ss_dssp TC-CS---EEEEECBTTB-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB-CSSHHHHH
T ss_pred cc-cc---cccccccccc-ccccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC-CCCHHHHH
Confidence 32 12 7888888776 4544689999997544 434567789999999999999999877665 33444433
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.42 E-value=3.1e-13 Score=118.33 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=85.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
++++. +...+..+|||||||+|..+..+++. +.+|+++|+++++.+.|++. +..
T Consensus 6 ~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~------~~~v~gvD~s~~~i~~A~~~-------------------~~~ 59 (231)
T d1vl5a_ 6 KLMQI-AALKGNEEVLDVATGGGHVANAFAPF------VKKVVAFDLTEDILKVARAF-------------------IEG 59 (231)
T ss_dssp HHHHH-HTCCSCCEEEEETCTTCHHHHHHGGG------SSEEEEEESCHHHHHHHHHH-------------------HHH
T ss_pred HHHHh-cCCCCcCEEEEecccCcHHHHHHHHh------CCEEEEEECCHHHHhhhhhc-------------------ccc
Confidence 44444 34445689999999999999999874 57999999999999888663 222
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+. .+ +.+..+++.+ ++..+++||+|+.-.. |-.++....+.++.++|+|||++++.++..
T Consensus 60 ~~~-~~---i~~~~~d~~~-l~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 60 NGH-QQ---VEYVQGDAEQ-MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp TTC-CS---EEEEECCC-C-CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccc-cc---cccccccccc-ccccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 222 12 7888888766 4444689999996543 434567788999999999999999887665
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.41 E-value=8.9e-14 Score=126.33 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=94.4
Q ss_pred HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 151 IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+...+..+|||+|||+|+.|++||++ ++++++|+++|.++++.+.|++ |+...+..++
T Consensus 81 l~i~pG~rVLEiG~GsG~lt~~la~~---v~~~g~V~~vD~~e~~~~~A~~-------------------n~~~~~~~~n 138 (250)
T d1yb2a1 81 CGLRPGMDILEVGVGSGNMSSYILYA---LNGKGTLTVVERDEDNLKKAMD-------------------NLSEFYDIGN 138 (250)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHH---HTTSSEEEEECSCHHHHHHHHH-------------------HHHTTSCCTT
T ss_pred cCCCCcCEEEEeeeeCcHHHHHHHHH---hCCCcEEEEEECCHHHHHHHHH-------------------HHHHhcCCCc
Confidence 34445679999999999999999996 5779999999999999988877 3333332233
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGL 310 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl 310 (327)
|.+..+|..+.++ +..||.||+|... .+..++.+.+.|||||++++- .|....+.+.++.+. +.|+
T Consensus 139 ---v~~~~~Di~~~~~--~~~fD~V~ld~p~----p~~~l~~~~~~LKpGG~lv~~----~P~i~Qv~~~~~~l~-~~gf 204 (250)
T d1yb2a1 139 ---VRTSRSDIADFIS--DQMYDAVIADIPD----PWNHVQKIASMMKPGSVATFY----LPNFDQSEKTVLSLS-ASGM 204 (250)
T ss_dssp ---EEEECSCTTTCCC--SCCEEEEEECCSC----GGGSHHHHHHTEEEEEEEEEE----ESSHHHHHHHHHHSG-GGTE
T ss_pred ---eEEEEeeeecccc--cceeeeeeecCCc----hHHHHHHHHHhcCCCceEEEE----eCCcChHHHHHHHHH-HCCC
Confidence 8888888777543 4789999998643 457899999999999999872 244566777776664 4555
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.41 E-value=4.8e-13 Score=119.40 Aligned_cols=160 Identities=15% Similarity=0.143 Sum_probs=107.0
Q ss_pred cCCCChHHHHHHHH---HhhcCCCCCCCCCCCchhhhhhhhhccCCchHHHHHHHHHhhc-CCCEEEEEcCcchHHHHHH
Q 041517 98 DSVPPQLVRQTIID---RIFNGTSPYVNFPPPHISHLLRRRRIKGWGSYGAVFGNLIDKV-RPRVIIEVGSFLGASALHM 173 (327)
Q Consensus 98 ~~~~~~~v~~~~l~---~~f~~~s~y~~~p~~~v~~~~~~~~~~gw~~~g~lL~~L~~~~-~p~~VLEIGt~~G~Sal~l 173 (327)
..+.++.+.+++.. +.|--.++|.+.+..-.. ...+..-...+.+|+.|...+ +..+|||||||+||.|..|
T Consensus 23 gvi~~~~v~~a~~~vpRe~Fvp~~aY~D~~lpi~~----~~~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~l 98 (223)
T d1r18a_ 23 GVIASDAVAQAMKETDRKHYSPRNPYMDAPQPIGG----GVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACF 98 (223)
T ss_dssp TSCCCHHHHHHHHTSCGGGTCSSCTTBSSCEEEET----TEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHH
T ss_pred CCCCCHHHHHHHHhCCHHHcCCccccCCCCccccC----CceeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHH
Confidence 45667788888865 444445567776643210 001111114566777764333 4579999999999999999
Q ss_pred HHHhccCC--CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEeeecchhhhhhhcCCc
Q 041517 174 ANLTRQLG--LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVV 251 (327)
Q Consensus 174 A~a~r~l~--~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~ 251 (327)
|+.+...+ ++.+|++||.++++.+.++++.. ..+....+. ..|.+..+|+.+..+. ..+
T Consensus 99 a~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~--------------~~~~~~~~~----~nv~~~~~d~~~~~~~-~~~ 159 (223)
T d1r18a_ 99 YRYIKAKGVDADTRIVGIEHQAELVRRSKANLN--------------TDDRSMLDS----GQLLIVEGDGRKGYPP-NAP 159 (223)
T ss_dssp HHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHH--------------HHHHHHHHH----TSEEEEESCGGGCCGG-GCS
T ss_pred HHHhhhccCCcccEEEEEecCHHHHHHHHHhhh--------------hcchhhcCc----cEEEEEeccccccccc-ccc
Confidence 99865322 35699999999998888876431 001111111 1288888988775544 468
Q ss_pred EeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 252 GDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 252 fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
||.|++++....-+ +.+...|+|||++|+
T Consensus 160 fD~Iiv~~a~~~~p-----~~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 160 YNAIHVGAAAPDTP-----TELINQLASGGRLIV 188 (223)
T ss_dssp EEEEEECSCBSSCC-----HHHHHTEEEEEEEEE
T ss_pred eeeEEEEeechhch-----HHHHHhcCCCcEEEE
Confidence 99999999876655 567899999999987
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5.7e-13 Score=125.17 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=106.3
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
....++-.++...+..+|||+|||+|+.|++||++ ++++|+|+++|.++++.+.|+++.+ ++..+
T Consensus 85 kD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~---vg~~G~V~t~E~~~~~~~~A~~n~~------------~~~~~ 149 (324)
T d2b25a1 85 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKA---VGSQGRVISFEVRKDHHDLAKKNYK------------HWRDS 149 (324)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHH---HCTTCEEEEEESSHHHHHHHHHHHH------------HHHHH
T ss_pred ccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHH---hCCCcEEEEecCCHHHHHHHHHHHH------------Hhhhh
Confidence 33444455556667889999999999999999996 6789999999999999999987542 11111
Q ss_pred HhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHH
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRA 300 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~A 300 (327)
.......+..-.+.+..+|..+....+ ...||.||+|-.. ++..++++.+.|||||++++ |. |....|.+.
T Consensus 150 ~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~----P~~~l~~~~~~LKpGG~lv~--~~--P~i~Qv~~~ 221 (324)
T d2b25a1 150 WKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLN----PHVTLPVFYPHLKHGGVCAV--YV--VNITQVIEL 221 (324)
T ss_dssp HTTTCSSCCCCCEEEEESCTTCCC-------EEEEEECSSS----TTTTHHHHGGGEEEEEEEEE--EE--SSHHHHHHH
T ss_pred hhhhhhhccccceeEEecchhhcccccCCCCcceEeecCcC----HHHHHHHHHHhccCCCEEEE--Ee--CCHHHHHHH
Confidence 111111111112788888765543332 3689999998643 45789999999999999987 22 556678888
Q ss_pred HHHHHHH-cCCe----EEEccceEEEecc
Q 041517 301 VNLFAKI-NGLK----VQIDGQHWVIHSA 324 (327)
Q Consensus 301 v~~f~~~-~gl~----v~~~gq~w~i~~~ 324 (327)
++.+... .++. +......|-+.+.
T Consensus 222 ~~~l~~~~~~f~~i~~~E~~~R~w~v~~~ 250 (324)
T d2b25a1 222 LDGIRTCELALSCEKISEVIVRDWLVCLA 250 (324)
T ss_dssp HHHHHHHTCCEEEEEEECCCCCCEEECC-
T ss_pred HHHHHHcCCCceeeEEEEEEeeeeEEecc
Confidence 8877543 3442 2335577876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=2.3e-13 Score=121.30 Aligned_cols=115 Identities=15% Similarity=0.056 Sum_probs=88.4
Q ss_pred HHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc
Q 041517 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN 226 (327)
Q Consensus 147 L~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g 226 (327)
|..+++..+..+|||||||+|..+..+++. . +.+|++||+++.+.+.+++ +....|
T Consensus 25 l~~~~~l~pg~~VLDiGCG~G~~~~~la~~---~--~~~v~GvD~s~~~~~~ar~-------------------~~~~~g 80 (245)
T d1nkva_ 25 LGRVLRMKPGTRILDLGSGSGEMLCTWARD---H--GITGTGIDMSSLFTAQAKR-------------------RAEELG 80 (245)
T ss_dssp HHHHTCCCTTCEEEEETCTTCHHHHHHHHH---T--CCEEEEEESCHHHHHHHHH-------------------HHHHTT
T ss_pred HHHHcCCCCCCEEEEEcCCCCHHHHHHHHh---c--CCEEEEEecccchhhHHHH-------------------HHHHhh
Confidence 333344444679999999999999999874 2 5799999999999988876 444556
Q ss_pred cCCcccceEeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 227 AIDSVLPVPFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 227 ~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+.++ |++..+++.+.. .+++||+|+. .+.+........++++.+.|||||++++.+..+
T Consensus 81 l~~~---v~~~~~d~~~~~--~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~ 140 (245)
T d1nkva_ 81 VSER---VHFIHNDAAGYV--ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW 140 (245)
T ss_dssp CTTT---EEEEESCCTTCC--CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred cccc---chhhhhHHhhcc--ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccc
Confidence 6666 889999887743 2578999985 444434455689999999999999999988765
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=5.2e-13 Score=117.98 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=79.5
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+..+|||||||+|+++..||+. ++++++|+++|.++.+.+.+++ |+...+.. +
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~---~~~~g~V~~id~~~~~~~~a~~-------------------~~~~~~~~-n- 127 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRV---VGEKGLVVSVEYSRKICEIAKR-------------------NVERLGIE-N- 127 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHH---HCTTCEEEEEESCHHHHHHHHH-------------------HHHHTTCC-S-
T ss_pred hccccceEEEecCccchhHHHHHHH---hCCCCcEEEeecchhhHHHhhh-------------------hHhhhccc-c-
Confidence 3445679999999999999999995 5778999999999999888876 33333332 2
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.+..+++.+.++. ..+||.|++++....-+ +.+++.|+|||+|++-.
T Consensus 128 --~~~~~~d~~~~~~~-~~~fD~I~~~~~~~~~p-----~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 128 --VIFVCGDGYYGVPE-FSPYDVIFVTVGVDEVP-----ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp --EEEEESCGGGCCGG-GCCEEEEEECSBBSCCC-----HHHHHHEEEEEEEEEEB
T ss_pred --cccccCchHHcccc-ccchhhhhhhccHHHhH-----HHHHHhcCCCcEEEEEE
Confidence 66777887765443 46899999998764433 56788899999998843
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=2.9e-12 Score=116.41 Aligned_cols=140 Identities=18% Similarity=0.093 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 143 YGAVFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 143 ~g~lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
+...|+.|.+..+ .++|||+|||+|..++.+++. +.+|++||+++.+.+.|++ |
T Consensus 107 T~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~------g~~V~gvDis~~av~~A~~-------------------n 161 (254)
T d2nxca1 107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL------GGKALGVDIDPMVLPQAEA-------------------N 161 (254)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT------TCEEEEEESCGGGHHHHHH-------------------H
T ss_pred hhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc------CCEEEEEECChHHHHHHHH-------------------H
Confidence 3456666665554 579999999999999987763 5789999999999998877 4
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHH
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAV 301 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av 301 (327)
+...+.. +++..++..+.++ .++||+|+.... .+.....++.+.+.|+|||++++.++... -...+
T Consensus 162 a~~n~~~-----~~~~~~d~~~~~~--~~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~lilSgil~~-----~~~~v 227 (254)
T d2nxca1 162 AKRNGVR-----PRFLEGSLEAALP--FGPFDLLVANLY--AELHAALAPRYREALVPGGRALLTGILKD-----RAPLV 227 (254)
T ss_dssp HHHTTCC-----CEEEESCHHHHGG--GCCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEEEEEEEGG-----GHHHH
T ss_pred HHHcCCc-----eeEEecccccccc--ccccchhhhccc--cccHHHHHHHHHHhcCCCcEEEEEecchh-----hHHHH
Confidence 4444432 5667787766544 378999997643 24445667889999999999999887652 23556
Q ss_pred HHHHHHcCCeEEEc--cceEEE
Q 041517 302 NLFAKINGLKVQID--GQHWVI 321 (327)
Q Consensus 302 ~~f~~~~gl~v~~~--gq~w~i 321 (327)
.+.++..|+++... -..|+.
T Consensus 228 ~~~~~~~Gf~~~~~~~~~~Wv~ 249 (254)
T d2nxca1 228 REAMAGAGFRPLEEAAEGEWVL 249 (254)
T ss_dssp HHHHHHTTCEEEEEEEETTEEE
T ss_pred HHHHHHCCCEEEEEEEECCEEE
Confidence 66667788876532 224764
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=8.1e-13 Score=120.84 Aligned_cols=134 Identities=15% Similarity=0.221 Sum_probs=99.3
Q ss_pred hHHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 142 SYGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 142 ~~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
....++-.++...+..+|||+|||+|+.|++||++ ++++++|+++|.++++.+.|++ |
T Consensus 90 kd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~---~~~~G~V~~vD~~~~~~~~A~~-------------------~ 147 (266)
T d1o54a_ 90 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARA---VGSSGKVFAYEKREEFAKLAES-------------------N 147 (266)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---TTTTCEEEEECCCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHH---hCCCcEEEEEeCCHHHHHHHHH-------------------H
Confidence 34445555666667889999999999999999996 6789999999999999998877 4
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHH
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAV 301 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av 301 (327)
+...++.+. +.+..++..+.+. ...||.||+|.. ..+..++++.+.|||||.+++-- |....+.+.+
T Consensus 148 ~~~~g~~~~---v~~~~~d~~~~~~--~~~~D~V~~d~p----~p~~~l~~~~~~LKpGG~lv~~~----P~~~Qv~~~~ 214 (266)
T d1o54a_ 148 LTKWGLIER---VTIKVRDISEGFD--EKDVDALFLDVP----DPWNYIDKCWEALKGGGRFATVC----PTTNQVQETL 214 (266)
T ss_dssp HHHTTCGGG---EEEECCCGGGCCS--CCSEEEEEECCS----CGGGTHHHHHHHEEEEEEEEEEE----SSHHHHHHHH
T ss_pred HHHhccccC---cEEEecccccccc--ccceeeeEecCC----CHHHHHHHHHhhcCCCCEEEEEe----CcccHHHHHH
Confidence 444444444 6666676544322 368999999864 34578999999999999998732 3445676776
Q ss_pred HHHHHHcCCe
Q 041517 302 NLFAKINGLK 311 (327)
Q Consensus 302 ~~f~~~~gl~ 311 (327)
+.+. +.|+.
T Consensus 215 ~~l~-~~gF~ 223 (266)
T d1o54a_ 215 KKLQ-ELPFI 223 (266)
T ss_dssp HHHH-HSSEE
T ss_pred HHHH-HCCce
Confidence 6664 45653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.31 E-value=1.8e-12 Score=117.84 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=85.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..||+. . +.+|++||+++.+.+.+++ +....|+.++ +
T Consensus 67 ~~~~vLDiGcG~G~~~~~la~~---~--~~~v~gvD~s~~~i~~a~~-------------------~~~~~gl~~~---v 119 (282)
T d2o57a1 67 RQAKGLDLGAGYGGAARFLVRK---F--GVSIDCLNIAPVQNKRNEE-------------------YNNQAGLADN---I 119 (282)
T ss_dssp TTCEEEEETCTTSHHHHHHHHH---H--CCEEEEEESCHHHHHHHHH-------------------HHHHHTCTTT---E
T ss_pred CCCEEEEeCCCCcHHHhhhhcc---C--CcEEEEEeccchhhhhhhc-------------------cccccccccc---c
Confidence 4579999999999999999974 2 5789999999999888776 3334455555 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEE-cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEI-DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfI-Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+++.+ ++..+++||+|+. ++-+-.+.....+.++.++|+|||++++.|+..
T Consensus 120 ~~~~~d~~~-l~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 120 TVKYGSFLE-IPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp EEEECCTTS-CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ccccccccc-ccccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 888998876 3544589999985 444435667789999999999999999988765
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=3.1e-12 Score=113.18 Aligned_cols=116 Identities=13% Similarity=0.122 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 143 YGAVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 143 ~g~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
...++..+.+.. ++++|||||||+|..++.|++. +.+|+|||+++.|.+.|++.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~------~~~v~gvD~s~~mi~~a~~~----------------- 82 (251)
T d1wzna1 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER------GYEVVGLDLHEEMLRVARRK----------------- 82 (251)
T ss_dssp HHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT------TCEEEEEESCHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc------ceEEEEEeeccccccccccc-----------------
Confidence 344555555433 3578999999999999999984 57899999999999988763
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC-CCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA-GHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa-~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
....+. .+.+..+++.+. + ++++||+|++=. .+.+ +.....|+.+.++|+|||+++++-..+
T Consensus 83 --~~~~~~-----~i~~~~~d~~~l-~-~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 83 --AKERNL-----KIEFLQGDVLEI-A-FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp --HHHTTC-----CCEEEESCGGGC-C-CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred --cccccc-----cchheehhhhhc-c-cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 222222 278888987763 2 357899999743 2222 335577999999999999999975443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.9e-12 Score=114.91 Aligned_cols=122 Identities=18% Similarity=0.061 Sum_probs=86.6
Q ss_pred ccCCchHHHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHH
Q 041517 137 IKGWGSYGAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLL 214 (327)
Q Consensus 137 ~~gw~~~g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~ 214 (327)
+..|. ..+++.+++.. .+++|||||||+|.++..+++. . ..++++||+++.+.+.|++...
T Consensus 35 m~~w~--~~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~----~-~~~v~~id~s~~~~~~a~~~~~---------- 97 (229)
T d1zx0a1 35 MERWE--TPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEA----P-IDEHWIIECNDGVFQRLRDWAP---------- 97 (229)
T ss_dssp EEGGG--HHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTS----C-EEEEEEEECCHHHHHHHHHHGG----------
T ss_pred HHHHH--HHHHHHHHHhhccCCCeEEEeeccchHHHHHHHHc----C-CCeEEEeCCCHHHHHHHHHHhh----------
Confidence 34562 24555554433 4579999999999999999873 2 4689999999999998876432
Q ss_pred HHHHHHHHhhhccCCcccceEeeecchhhhhhhc-CCcEeEEEEcCCCCCC------cHHHHHHHHHccCCCCeEEEEEc
Q 041517 215 YFQFLQNVIYQNAIDSVLPVPFSSGSALTKLCEW-GVVGDLIEIDAGHDFN------SAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 215 ~~~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~------~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
..+ ..+.+..+++.+....+ +++||+|++|...... .....++++.++|||||++++.+
T Consensus 98 ---------~~~-----~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 98 ---------RQT-----HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp ---------GCS-----SEEEEEESCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ---------hcc-----cccccccccccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 111 12666777777655444 4799999999764432 23457889999999999999866
Q ss_pred CC
Q 041517 288 YF 289 (327)
Q Consensus 288 ~~ 289 (327)
..
T Consensus 164 ~~ 165 (229)
T d1zx0a1 164 LT 165 (229)
T ss_dssp HH
T ss_pred cC
Confidence 54
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.27 E-value=4.4e-12 Score=113.18 Aligned_cols=104 Identities=14% Similarity=0.209 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
+.+|+.| ...+..+|||||||+||+|..||+. .++|+++|.++.+.+.|++. ..
T Consensus 60 a~ml~~L-~l~~g~~VLdIG~GsGy~ta~La~l------~~~V~aiE~~~~~~~~A~~~-------------------~~ 113 (224)
T d1vbfa_ 60 IFMLDEL-DLHKGQKVLEIGTGIGYYTALIAEI------VDKVVSVEINEKMYNYASKL-------------------LS 113 (224)
T ss_dssp HHHHHHT-TCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEEESCHHHHHHHHHH-------------------HT
T ss_pred HHHHHHh-hhcccceEEEecCCCCHHHHHHHHH------hcccccccccHHHHHHHHHH-------------------Hh
Confidence 3445443 4456789999999999999999986 57999999999888877652 21
Q ss_pred hhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
.. .+ +.+..++.....+. .++||.|++.+..+.-+ +.++..|+|||+||+
T Consensus 114 ~~---~n---v~~~~~d~~~g~~~-~~pfD~Iiv~~a~~~ip-----~~l~~qLk~GGrLV~ 163 (224)
T d1vbfa_ 114 YY---NN---IKLILGDGTLGYEE-EKPYDRVVVWATAPTLL-----CKPYEQLKEGGIMIL 163 (224)
T ss_dssp TC---SS---EEEEESCGGGCCGG-GCCEEEEEESSBBSSCC-----HHHHHTEEEEEEEEE
T ss_pred cc---cc---cccccCchhhcchh-hhhHHHHHhhcchhhhh-----HHHHHhcCCCCEEEE
Confidence 11 12 88888887765554 47899999998765444 567889999999887
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.25 E-value=1.5e-11 Score=109.10 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 143 YGAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 143 ~g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
.+.+|+.| +..+..+|||||||+||+|..||+.+ +++|++||.++.+.+.+++ |+
T Consensus 67 ~a~ml~~L-~l~~g~~VLeIGsGsGY~taila~l~-----g~~V~~ie~~~~l~~~a~~-------------------~l 121 (215)
T d1jg1a_ 67 VAIMLEIA-NLKPGMNILEVGTGSGWNAALISEIV-----KTDVYTIERIPELVEFAKR-------------------NL 121 (215)
T ss_dssp HHHHHHHH-TCCTTCCEEEECCTTSHHHHHHHHHH-----CSCEEEEESCHHHHHHHHH-------------------HH
T ss_pred HHHHHHhh-ccCccceEEEecCCCChhHHHHHHhh-----CceeEEEeccHHHHHHHHH-------------------HH
Confidence 34555544 45556799999999999999999863 4789999999988887776 33
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
...+.. .+.+..+|..+..+. ..+||.|++.+.....+ +.++..|+|||++++-
T Consensus 122 ~~~g~~----nv~~~~gd~~~g~~~-~~pfD~Iiv~~a~~~ip-----~~l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 122 ERAGVK----NVHVILGDGSKGFPP-KAPYDVIIVTAGAPKIP-----EPLIEQLKIGGKLIIP 175 (215)
T ss_dssp HHTTCC----SEEEEESCGGGCCGG-GCCEEEEEECSBBSSCC-----HHHHHTEEEEEEEEEE
T ss_pred HHcCCc----eeEEEECccccCCcc-cCcceeEEeecccccCC-----HHHHHhcCCCCEEEEE
Confidence 333432 288899998876554 58999999998876655 5678899999999873
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.24 E-value=9.7e-12 Score=107.51 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=77.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..+++. +.+|+|+|++++|.+.|++. ....+. .+
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~------~~~v~giD~S~~~i~~ak~~-------------------~~~~~~-----~~ 86 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY------GFEVVGVDISEDMIRKAREY-------------------AKSRES-----NV 86 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHH-------------------HHHTTC-----CC
T ss_pred CCCEEEEECCCcchhhhhHhhh------hcccccccccccchhhhhhh-------------------hccccc-----cc
Confidence 3479999999999999999983 67999999999999888763 222221 15
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC-C--cHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF-N--SAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~--~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..+++.+ ++..+++||+|+.-....+ + .....++.+.++|+|||+++++...
T Consensus 87 ~~~~~d~~~-l~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 87 EFIVGDARK-LSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEECCTTS-CCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccccccccc-ccccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 566666665 4555689999987544333 2 3456799999999999999988654
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.22 E-value=5.1e-12 Score=115.43 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=86.8
Q ss_pred HHHHHHh----hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 146 VFGNLID----KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 146 lL~~L~~----~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
++..|++ ..+|.+|||||||+|..+..++.. ++.+.+|++||+++.+.+.|++.
T Consensus 14 ~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~---~~~~~~v~giD~s~~~l~~a~~~------------------- 71 (281)
T d2gh1a1 14 YVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPL---LPEGSKYTGIDSGETLLAEAREL------------------- 71 (281)
T ss_dssp HHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTT---SCTTCEEEEEECCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHh---CCCCCEEEEEecchhHhhhhhcc-------------------
Confidence 4455543 457899999999999999999984 56678999999999999888763
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-CCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-DFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
....+. .+.+..+++.+ ++ ++++||+|+.-... -.+.....++.+.+.|+|||.+++.+..|
T Consensus 72 ~~~~~~-----~~~f~~~d~~~-~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~ 134 (281)
T d2gh1a1 72 FRLLPY-----DSEFLEGDATE-IE-LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 134 (281)
T ss_dssp HHSSSS-----EEEEEESCTTT-CC-CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred cccccc-----ccccccccccc-cc-ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence 222221 27788888765 22 35689999977543 23556788999999999999988877553
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.21 E-value=9.8e-12 Score=110.32 Aligned_cols=110 Identities=11% Similarity=-0.019 Sum_probs=80.4
Q ss_pred HHHHHHHhh--cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 145 AVFGNLIDK--VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 145 ~lL~~L~~~--~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
.++..++.. ..+++|||||||+|..+..|++. +.+|+|||.++.|.+.|++. .
T Consensus 25 ~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~------g~~v~GvD~S~~ml~~A~~~-------------------~ 79 (246)
T d1y8ca_ 25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK------FKNTWAVDLSQEMLSEAENK-------------------F 79 (246)
T ss_dssp HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG------SSEEEEECSCHHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh------CCccEeeccchhhhhhcccc-------------------c
Confidence 344444433 34689999999999999999984 56899999999999988763 2
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEE--cCCC---CCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEI--DAGH---DFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfI--Da~h---~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
...+. ++++..+|..+. .+.++||+|++ +.-+ ........++.+.++|+|||++|++
T Consensus 80 ~~~~~-----~v~~~~~d~~~~--~~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 80 RSQGL-----KPRLACQDISNL--NINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp HHTTC-----CCEEECCCGGGC--CCSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccCc-----cceeeccchhhh--cccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 22222 278888887763 34579999997 3221 1234456789999999999999975
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.20 E-value=2.4e-11 Score=104.70 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=82.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++.. ++..++++|||||||+|..+.+|++. +.+|++||+++.+.+.+++.. ..
T Consensus 21 ~~~~~-~~~~~~grvLDiGcG~G~~~~~la~~------g~~v~gvD~s~~~l~~a~~~~-------------------~~ 74 (198)
T d2i6ga1 21 DVLAA-AKVVAPGRTLDLGCGNGRNSLYLAAN------GYDVTAWDKNPASMANLERIK-------------------AA 74 (198)
T ss_dssp HHHHH-HTTSCSCEEEEETCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHH-------------------HH
T ss_pred HHHHH-cccCCCCcEEEECCCCCHHHHHHHHH------hhhhccccCcHHHHHHHHHHh-------------------hh
Confidence 34443 35667899999999999999999984 679999999999998776532 22
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+.. . +.+..++..+. ..++.||+|+......+ +.....++.+.+.|+|||++++.....
T Consensus 75 ~~~~-~---~~~~~~d~~~~--~~~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 75 EGLD-N---LQTDLVDLNTL--TFDGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp TTCT-T---EEEEECCTTTC--CCCCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred cccc-c---hhhhheecccc--cccccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 2221 1 66666665542 23578999997654322 334578999999999999988876544
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.19 E-value=6.2e-11 Score=102.18 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=94.9
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+|-..+...+.++|||||||+|..++.+|+. ..+|+++|.++.+.+.+++ |+...
T Consensus 43 lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~------~~~v~~iD~s~~~i~~a~~-------------------n~~~~ 97 (194)
T d1dusa_ 43 ILVENVVVDKDDDILDLGCGYGVIGIALADE------VKSTTMADINRRAIKLAKE-------------------NIKLN 97 (194)
T ss_dssp HHHHHCCCCTTCEEEEETCTTSHHHHHHGGG------SSEEEEEESCHHHHHHHHH-------------------HHHHT
T ss_pred HHHHhCCcCCCCeEEEEeecCChhHHHHHhh------ccccceeeeccccchhHHH-------------------HHHHh
Confidence 3333334456789999999999999998874 4689999999999888876 33333
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC-Cc-HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-NS-AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~-v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
++.. ..+++..+|..+.++ +.+||+|+.+..... .. ....++.+.++|+|||++++--.. ..+. +.+..
T Consensus 98 ~l~~--~~i~~~~~d~~~~~~--~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~----~~~~-~~~~~ 168 (194)
T d1dusa_ 98 NLDN--YDIRVVHSDLYENVK--DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT----KQGA-KSLAK 168 (194)
T ss_dssp TCTT--SCEEEEECSTTTTCT--TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES----THHH-HHHHH
T ss_pred CCcc--ceEEEEEcchhhhhc--cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC----cCCH-HHHHH
Confidence 3322 127888888766433 478999999865322 22 345689999999999987653222 1233 33333
Q ss_pred HHHHc--CCeEEEccceEEEecc
Q 041517 304 FAKIN--GLKVQIDGQHWVIHSA 324 (327)
Q Consensus 304 f~~~~--gl~v~~~gq~w~i~~~ 324 (327)
+..+. .++.......|.|.++
T Consensus 169 ~l~~~f~~~~~~~~~~gf~vl~a 191 (194)
T d1dusa_ 169 YMKDVFGNVETVTIKGGYRVLKS 191 (194)
T ss_dssp HHHHHHSCCEEEEEETTEEEEEE
T ss_pred HHHHhCCcEEEEEecCCcEEEEE
Confidence 33332 4566656666765543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.19 E-value=6.8e-12 Score=109.90 Aligned_cols=100 Identities=11% Similarity=0.043 Sum_probs=74.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
.+.+|||||||+|..+..++.. +.+|+|||++++|.+.|++... .
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~------~~~v~giD~s~~~l~~a~~~~~-----------------------------~ 86 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQER------GFEVVLVDPSKEMLEVAREKGV-----------------------------K 86 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT------TCEEEEEESCHHHHHHHHHHTC-----------------------------S
T ss_pred CCCEEEEECCCCchhccccccc------ceEEEEeecccccccccccccc-----------------------------c
Confidence 4679999999999999999874 6799999999999887765211 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC--CCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG--HDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~--h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+..+++.+ |+..+++||+|+.-+. |-.++....++.+.++|+|||+++++...+
T Consensus 87 ~~~~~~~~~-l~~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 87 NVVEAKAED-LPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp CEEECCTTS-CCSCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ccccccccc-cccccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 123455444 4444689999986332 223456678999999999999999976543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.17 E-value=1.1e-10 Score=102.25 Aligned_cols=108 Identities=13% Similarity=0.086 Sum_probs=78.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||||||+|..+..|++.+ ..++.+|++||+++.|.+.|++. +...+.... +.
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~--~~~~~~v~giD~S~~ml~~A~~~-------------------~~~~~~~~~---~~ 95 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNI--NQPNVKIIGIDNSQPMVERCRQH-------------------IAAYHSEIP---VE 95 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTC--CCSSCEEEEECSCHHHHHHHHHH-------------------HHTSCCSSC---EE
T ss_pred CCEEEEeccchhhHHHHHHHhh--cCCCCceEEeCCCHHHHHHHHHH-------------------hHhhcccch---hh
Confidence 4699999999999999999852 24588999999999999998763 222222222 66
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCC-CC--CCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAG-HD--FNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~-h~--~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..++..+. + ...+|+|+.-.. |- .+.....++.+++.|+|||++++.|...
T Consensus 96 ~~~~d~~~~-~--~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 96 ILCNDIRHV-E--IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp EECSCTTTC-C--CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred hccchhhcc-c--cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence 666665442 1 356788876533 22 2355678999999999999999988765
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.15 E-value=2.5e-10 Score=106.55 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=104.4
Q ss_pred HHHHHHHHHhhcC-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 143 YGAVFGNLIDKVR-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 143 ~g~lL~~L~~~~~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
+...-..+.+..+ .++|||+|||+|..++.+|.. + ..+|+++|.++.+.+.+++ |
T Consensus 132 qr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~----g-a~~V~~vD~s~~al~~a~~-------------------N 187 (324)
T d2as0a2 132 QRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIA----G-ADEVIGIDKSPRAIETAKE-------------------N 187 (324)
T ss_dssp THHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHT----T-CSEEEEEESCHHHHHHHHH-------------------H
T ss_pred hhhHHHHHHhhcCCCCeeecccCcccchhhhhhhc----C-CcEEEeecCCHHHHHHHHH-------------------H
Confidence 3333344445444 579999999999999998873 3 3589999999999988876 5
Q ss_pred HhhhccCCcccceEeeecchhhhhhh---cCCcEeEEEEcCCCCCCc----------HHHHHHHHHccCCCCeEEEEEcC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCE---WGVVGDLIEIDAGHDFNS----------AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~---l~~~fDLIfIDa~h~~~~----------v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+...|+.++ +++..+|+.+.+.. .+.+||+|++|....... ....+..+.++|+|||+|++..+
T Consensus 188 ~~~ngl~~~---~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 188 AKLNGVEDR---MKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp HHHTTCGGG---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred HHHcCCCcc---ceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 555566555 88899998876543 368999999996532211 22346778999999999999887
Q ss_pred CCCCCchhHHHHHHHHHHHcCCeEEEc
Q 041517 289 FTAADNRGVRRAVNLFAKINGLKVQID 315 (327)
Q Consensus 289 ~~~~~~~GV~~Av~~f~~~~gl~v~~~ 315 (327)
...-+...-.+.+.+.+...|..++..
T Consensus 265 s~~~~~~~f~~~v~~a~~~~gr~~~~~ 291 (324)
T d2as0a2 265 SQHVDLQMFKDMIIAAGAKAGKFLKML 291 (324)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTEEEEES
T ss_pred CccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 764433344566666677777666653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.12 E-value=2.2e-10 Score=106.79 Aligned_cols=138 Identities=17% Similarity=0.102 Sum_probs=100.5
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
..+.+..+.++|||+|||+|..++.+|.. ..+|+++|.++.+.+.+++ |+...|+
T Consensus 138 r~~~~~~~g~rVLDl~~gtG~~s~~~a~g------~~~V~~vD~s~~al~~a~~-------------------n~~~ngl 192 (318)
T d1wxxa2 138 RLYMERFRGERALDVFSYAGGFALHLALG------FREVVAVDSSAEALRRAEE-------------------NARLNGL 192 (318)
T ss_dssp HHHGGGCCEEEEEEETCTTTHHHHHHHHH------EEEEEEEESCHHHHHHHHH-------------------HHHHTTC
T ss_pred HHHHHHhCCCeeeccCCCCcHHHHHHHhc------CCcEEeecchHHHHHHHHH-------------------HHHHcCC
Confidence 44455667889999999999999998864 5789999999999988876 4544455
Q ss_pred CCcccceEeeecchhhhhhh---cCCcEeEEEEcCCCC---CCcH-------HHHHHHHHccCCCCeEEEEEcCCCCCCc
Q 041517 228 IDSVLPVPFSSGSALTKLCE---WGVVGDLIEIDAGHD---FNSA-------WADINRAWRILRPGGVIFGHDYFTAADN 294 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~---l~~~fDLIfIDa~h~---~~~v-------~~dl~~~~~lL~pGGvIi~dD~~~~~~~ 294 (327)
. . +++..+++.+.+.. .+++||+|++|.... .... ..-+..+.++|+|||+|+...+....+.
T Consensus 193 ~-~---~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~ 268 (318)
T d1wxxa2 193 G-N---VRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTE 268 (318)
T ss_dssp T-T---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH
T ss_pred C-C---cceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCH
Confidence 3 2 78889988776543 468999999995321 1111 2345678899999999999888654444
Q ss_pred hhHHHHHHHHHHHcCCeEEE
Q 041517 295 RGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 295 ~GV~~Av~~f~~~~gl~v~~ 314 (327)
..-.+.+.+.+...+.+++.
T Consensus 269 ~~f~~~v~~a~~~a~~~~~~ 288 (318)
T d1wxxa2 269 PLFYAMVAEAAQDAHRLLRV 288 (318)
T ss_dssp HHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEE
Confidence 44566677777777766553
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.12 E-value=9.2e-11 Score=97.81 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=84.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..|-...+.++|||+|||+|..++..+. .+ -.+|++||.++.+.+.+++ |+..
T Consensus 4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~----rg-a~~v~~ve~~~~a~~~~~~-------------------n~~~ 59 (152)
T d2esra1 4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVS----RG-MSAAVLVEKNRKAQAIIQD-------------------NIIM 59 (152)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHH----TT-CCEEEEECCCHHHHHHHHH-------------------HHHT
T ss_pred HHHHHHHhhCCCCeEEEcCCccCHHHHHHHH----hC-cceeeeehhchhhhhhhhh-------------------hhhh
Confidence 3556665556789999999999999987665 23 2599999999988877766 4544
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHH--HccCCCCeEEEEEc
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRA--WRILRPGGVIFGHD 287 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~--~~lL~pGGvIi~dD 287 (327)
.+..++ +.+..+|+.+.+.....+||+||+|...........++.+ .++|+|||+|++..
T Consensus 60 ~~~~~~---~~ii~~D~~~~l~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 60 TKAENR---FTLLKMEAERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp TTCGGG---EEEECSCHHHHHHHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cccccc---hhhhcccccccccccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 455555 8889999988887778899999999542222223445544 35799999999853
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.12 E-value=6.4e-11 Score=104.07 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=95.8
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
..++.+.+..++++|||||||+|..+..++.. +.+|++||+++.+.+.+++...
T Consensus 10 ~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~------g~~v~giD~s~~~i~~a~~~~~-------------------- 63 (225)
T d2p7ia1 10 FMVRAFTPFFRPGNLLELGSFKGDFTSRLQEH------FNDITCVEASEEAISHAQGRLK-------------------- 63 (225)
T ss_dssp HHHHHHGGGCCSSCEEEESCTTSHHHHHHTTT------CSCEEEEESCHHHHHHHHHHSC--------------------
T ss_pred HHHHHhhhhCCCCcEEEEeCCCcHHHHHHHHc------CCeEEEEeCcHHHhhhhhcccc--------------------
Confidence 35566677778999999999999999998863 5689999999998887765221
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-CCcHHHHHHHHH-ccCCCCeEEEEEcCCCC-----------
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-FNSAWADINRAW-RILRPGGVIFGHDYFTA----------- 291 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~~~v~~dl~~~~-~lL~pGGvIi~dD~~~~----------- 291 (327)
+. +.+..++..+. ..+++||+|+.-.-.. .+.....+..+. ++|+|||++++.-....
T Consensus 64 ----~~---~~~~~~~~~~~--~~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~ 134 (225)
T d2p7ia1 64 ----DG---ITYIHSRFEDA--QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMG 134 (225)
T ss_dssp ----SC---EEEEESCGGGC--CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTT
T ss_pred ----cc---ccccccccccc--ccccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhh
Confidence 11 67777776553 2357899999754422 245567788887 78999999998643210
Q ss_pred -----CCch--h---------HHHHHHHHHHHcCCeEEEc
Q 041517 292 -----ADNR--G---------VRRAVNLFAKINGLKVQID 315 (327)
Q Consensus 292 -----~~~~--G---------V~~Av~~f~~~~gl~v~~~ 315 (327)
..+. . -.+-+..++.+.|+++...
T Consensus 135 ~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 135 IISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp SSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred hhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence 0000 0 1456778888899987653
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.11 E-value=1.5e-10 Score=103.34 Aligned_cols=128 Identities=16% Similarity=0.025 Sum_probs=84.6
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|+++.++|+. .++++|++||+++.|.+.+++... . ... +.
T Consensus 75 G~~VLDlGcGsG~~~~~la~~----~~~g~V~aVDiS~~~i~~a~~~a~-------------------~---~~n---i~ 125 (230)
T d1g8sa_ 75 DSKILYLGASAGTTPSHVADI----ADKGIVYAIEYAPRIMRELLDACA-------------------E---REN---II 125 (230)
T ss_dssp TCEEEEESCCSSHHHHHHHHH----TTTSEEEEEESCHHHHHHHHHHTT-------------------T---CTT---EE
T ss_pred CCEEEEeCEEcCHHHHHHHHh----CCCCEEEEEeCcHHHHHHHHHHHh-------------------h---hcc---cc
Confidence 468999999999999999985 458999999999988876544211 1 112 33
Q ss_pred eeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchh----HHHHHHHHHHHcC
Q 041517 236 FSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRG----VRRAVNLFAKING 309 (327)
Q Consensus 236 ~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~G----V~~Av~~f~~~~g 309 (327)
...+++....... ...+|+++.|-.+ .+.....+.++.+.|+|||.+++.+..+..+..+ +.+.+.+..+..|
T Consensus 126 ~i~~d~~~~~~~~~~~~~v~~i~~~~~~-~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aG 204 (230)
T d1g8sa_ 126 PILGDANKPQEYANIVEKVDVIYEDVAQ-PNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGG 204 (230)
T ss_dssp EEECCTTCGGGGTTTCCCEEEEEECCCS-TTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHT
T ss_pred eEEEeeccCcccccccceeEEeeccccc-hHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcC
Confidence 4455544432222 2456677777555 3556677999999999999888876655322211 3333444556678
Q ss_pred CeEE
Q 041517 310 LKVQ 313 (327)
Q Consensus 310 l~v~ 313 (327)
+++.
T Consensus 205 F~iv 208 (230)
T d1g8sa_ 205 FKIV 208 (230)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 7754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=1e-10 Score=106.61 Aligned_cols=120 Identities=13% Similarity=0.030 Sum_probs=78.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..+++..+.++|||||||+|..++.||+. +.+|++||+++.|++.|++... .
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~------g~~v~gvD~S~~ml~~A~~~~~-------------------~ 100 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE------GFSVTSVDASDKMLKYALKERW-------------------N 100 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHHHH-------------------H
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc------CCeeeeccCchHHHHHHHHHHH-------------------h
Confidence 44555556666789999999999999999984 5699999999999998876431 0
Q ss_pred hccCCcccceEeeecchhhhhh--hcCCcEeEEEEcCC---CC------CCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLC--EWGVVGDLIEIDAG---HD------FNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~--~l~~~fDLIfIDa~---h~------~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+.........+...+....-. .....||+|++-++ |- .+.....|+.+.++|+|||++|++-..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 101 RRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp TTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 0100000012222232221101 12468999987542 21 123456899999999999999997543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.10 E-value=5.1e-11 Score=100.28 Aligned_cols=126 Identities=3% Similarity=-0.209 Sum_probs=80.8
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccC-ccccchHHHHHHHHHHhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIP-MVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~-~~~g~~~~~~~Fl~nv~~ 224 (327)
++..| ...++.+|||+|||+|..+++||+. +.+|++||+++.|.+.+++..+.. .... ....
T Consensus 12 ~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~----------~~~~ 74 (201)
T d1pjza_ 12 YWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ------GYHVVGAELSEAAVERYFTERGEQPHITS----------QGDF 74 (201)
T ss_dssp HHHHH-CCCTTCEEEETTTCCSHHHHHHHHH------CCEEEEEEECHHHHHHHHHHHCSCSEEEE----------ETTE
T ss_pred HHHHc-CCCCCCEEEEecCcCCHHHHHHHHc------CCceEeecccHHHHHHHHHHhccccchhh----------hhhh
Confidence 34444 3445679999999999999999985 789999999999999887743210 0000 0000
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC---cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN---SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~---~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
... ....+.+..++..+.-+.....||+|+.-.....- .....++.+.+.|+|||.+++.....
T Consensus 75 ~~~--~~~~~~~~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~ 141 (201)
T d1pjza_ 75 KVY--AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY 141 (201)
T ss_dssp EEE--ECSSSEEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred hhc--cccccceecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence 000 00114566666555333334689999875443222 23467899999999999877655544
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=2.6e-10 Score=104.43 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=81.4
Q ss_pred HHHHHHHhhcC---CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKVR---PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~~---p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
..+..+++.++ ..+|||||||.|..+..+++. . +.+|++||+++.+.+.+++ .
T Consensus 39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~---~--g~~v~gi~ls~~q~~~a~~-------------------~ 94 (280)
T d2fk8a1 39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVER---F--DVNVIGLTLSKNQHARCEQ-------------------V 94 (280)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHH---H--CCEEEEEESCHHHHHHHHH-------------------H
T ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHh---C--ceeEEEecchHHHHHHHHH-------------------H
Confidence 34566666543 579999999999999999874 2 6799999999998887765 3
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-C--CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-F--NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~--~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+...++... +.+...+.. ..+++||.|+.-.... . ......++.+.++|+|||+++++++.
T Consensus 95 ~~~~~l~~~---~~~~~~d~~----~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~ 158 (280)
T d2fk8a1 95 LASIDTNRS---RQVLLQGWE----DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 158 (280)
T ss_dssp HHTSCCSSC---EEEEESCGG----GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HHhhccccc---hhhhhhhhh----hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence 334455444 555555533 2357899998544321 1 22246899999999999999998754
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=5.1e-10 Score=103.16 Aligned_cols=116 Identities=10% Similarity=0.007 Sum_probs=84.0
Q ss_pred HHHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 144 GAVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 144 g~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
...+..+++.+ +..+|||||||.|..++.+|+. . +.+|++|+++++..+.+++
T Consensus 47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~---~--g~~v~git~s~~q~~~a~~------------------- 102 (291)
T d1kpia_ 47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAE---Y--DVNVIGLTLSENQYAHDKA------------------- 102 (291)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHH---H--CCEEEEEESCHHHHHHHHH-------------------
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHh---c--CcceeeccchHHHHHHHHH-------------------
Confidence 34566666554 3579999999999999999974 2 6899999999987776655
Q ss_pred HHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCC----------CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 221 NVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF----------NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 221 nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~----------~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+...|+.++ +.+...+.. ..+++||.|+.-...+. ......++.+.++|+|||.++++++..
T Consensus 103 ~~~~~~l~~~---v~~~~~d~~----~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 103 MFDEVDSPRR---KEVRIQGWE----EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp HHHHSCCSSC---EEEEECCGG----GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred HHHhhccchh---hhhhhhccc----ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 3334456555 666666542 33689999985544211 113478999999999999999998764
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.08 E-value=3e-10 Score=101.18 Aligned_cols=128 Identities=17% Similarity=0.072 Sum_probs=87.1
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|..+.+||+. ++++|+|+++|+++.+.+.+++.. ...+ . +.
T Consensus 74 G~~VLDlGaGsG~~t~~la~~---VG~~G~V~aVD~s~~~l~~a~~~a-------------------~~~~---~---~~ 125 (227)
T d1g8aa_ 74 GKSVLYLGIASGTTASHVSDI---VGWEGKIFGIEFSPRVLRELVPIV-------------------EERR---N---IV 125 (227)
T ss_dssp TCEEEEETTTSTTHHHHHHHH---HCTTSEEEEEESCHHHHHHHHHHH-------------------SSCT---T---EE
T ss_pred CCEEEEeccCCCHHHHHHHHH---hCCCCEEEEEeCcHHHHHHHHHHH-------------------HhcC---C---ce
Confidence 469999999999999999996 688999999999998877665422 1111 1 33
Q ss_pred eeecchhh--hhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCC----CCchhHHHHHHHHHHHcC
Q 041517 236 FSSGSALT--KLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTA----ADNRGVRRAVNLFAKING 309 (327)
Q Consensus 236 ~~~gda~~--~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~----~~~~GV~~Av~~f~~~~g 309 (327)
...+++.. .+......+|+||.|-.+. +.....++++.+.|+|||++++...... .....+.+.++.+.+ .+
T Consensus 126 ~i~~d~~~~~~~~~~~~~vD~i~~d~~~~-~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~-~g 203 (227)
T d1g8aa_ 126 PILGDATKPEEYRALVPKVDVIFEDVAQP-TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELS-EY 203 (227)
T ss_dssp EEECCTTCGGGGTTTCCCEEEEEECCCST-THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHH-TT
T ss_pred EEEEECCCcccccccccceEEEEEEcccc-chHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHH-cC
Confidence 33333322 2233347899999998764 3456679999999999998887643321 122346566666544 46
Q ss_pred CeEE
Q 041517 310 LKVQ 313 (327)
Q Consensus 310 l~v~ 313 (327)
+++.
T Consensus 204 f~ii 207 (227)
T d1g8aa_ 204 FEVI 207 (227)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.05 E-value=1.1e-10 Score=104.18 Aligned_cols=105 Identities=18% Similarity=0.096 Sum_probs=75.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||||+|..+..++.. + .++|+|||+++.|.+.|++.. ...+...+ +
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~----~-~~~v~GiD~S~~~l~~A~~r~-------------------~~~~~~~~---v 76 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERA----G-IGEYYGVDIAEVSINDARVRA-------------------RNMKRRFK---V 76 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHH----T-CSEEEEEESCHHHHHHHHHHH-------------------HTSCCSSE---E
T ss_pred CcCEEEEecccCcHHHHHHHHc----C-CCeEEEecCCHHHHHHHHHHH-------------------HhcCCCcc---e
Confidence 4579999999999998888874 2 468999999999998886532 11122222 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCC-CCC----CcHHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAG-HDF----NSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~-h~~----~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
.+..+|+.......+.+||+|++-.. |-. +.....++.+.+.|+|||+++++
T Consensus 77 ~f~~~D~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~ 133 (252)
T d1ri5a_ 77 FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133 (252)
T ss_dssp EEEESCTTTSCCCCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred EEEEcchhhhcccccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence 88888875532234578999997544 322 22346788999999999999885
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.1e-10 Score=102.20 Aligned_cols=130 Identities=13% Similarity=0.027 Sum_probs=90.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..+..++.. -..+|++||+++.|.+.|++... ..+. . .+
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~~vD~s~~~l~~ak~~~~-------------------~~~~-~---~~ 111 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLP-----LFREVDMVDITEDFLVQAKTYLG-------------------EEGK-R---VR 111 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTT-----TCSEEEEEESCHHHHHHHHHHTG-------------------GGGG-G---EE
T ss_pred CCCEEEEeccCCCHhhHHHHHh-----cCCEEEEeecCHHHhhccccccc-------------------cccc-c---cc
Confidence 4578999999999999887642 14689999999999998876431 1111 1 16
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC-Cc--HHHHHHHHHccCCCCeEEEEEcCCCCCCc------hh---HHHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF-NS--AWADINRAWRILRPGGVIFGHDYFTAADN------RG---VRRAVN 302 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~~--v~~dl~~~~~lL~pGGvIi~dD~~~~~~~------~G---V~~Av~ 302 (327)
.+..++..+. +..+++||+|++-....+ +. ....++.+.+.|+|||++++.|....... .. -...+.
T Consensus 112 ~f~~~d~~~~-~~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (222)
T d2ex4a1 112 NYFCCGLQDF-TPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR 190 (222)
T ss_dssp EEEECCGGGC-CCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHH
T ss_pred cccccccccc-ccccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHH
Confidence 7888887763 444689999998654322 22 24678999999999999998776542100 00 245567
Q ss_pred HHHHHcCCeEE
Q 041517 303 LFAKINGLKVQ 313 (327)
Q Consensus 303 ~f~~~~gl~v~ 313 (327)
+++.+.|+++.
T Consensus 191 ~l~~~aGf~ii 201 (222)
T d2ex4a1 191 RIICSAGLSLL 201 (222)
T ss_dssp HHHHHTTCCEE
T ss_pred HHHHHcCCEEE
Confidence 77788898864
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.04 E-value=5.4e-10 Score=102.69 Aligned_cols=116 Identities=16% Similarity=0.112 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhcC---CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHH
Q 041517 143 YGAVFGNLIDKVR---PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFL 219 (327)
Q Consensus 143 ~g~lL~~L~~~~~---p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl 219 (327)
|...+..+++.++ ..+|||||||.|..++++|+. . +.+|++|++++...+.+++
T Consensus 47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~---~--g~~v~git~s~~Q~~~a~~------------------ 103 (285)
T d1kpga_ 47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEK---Y--DVNVVGLTLSKNQANHVQQ------------------ 103 (285)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHH---H--CCEEEEEESCHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhc---C--CcceEEEeccHHHHHHHHH------------------
Confidence 4456666666553 579999999999999999985 2 6899999999988777765
Q ss_pred HHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCC-C--CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 220 QNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHD-F--NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 220 ~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~-~--~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+...|+.++ +++..+|..+ ++++||-|+.=...+ . ......++.+.++|+|||.++++++.
T Consensus 104 -~~~~~g~~~~---v~~~~~d~~~----~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 104 -LVANSENLRS---KRVLLAGWEQ----FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp -HHHTCCCCSC---EEEEESCGGG----CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -HHHhhhhhhh---hHHHHhhhhc----ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 3344566666 7777777533 357899877433211 1 22347899999999999999998885
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.03 E-value=1.1e-09 Score=95.89 Aligned_cols=122 Identities=20% Similarity=0.083 Sum_probs=84.7
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEe
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPF 236 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~ 236 (327)
-.|||||||+|.+++.+|+. .|+..+++||+++.+...+.+ ++...++. + |.+
T Consensus 31 PlvLeIGcG~G~~~~~lA~~----~p~~~~iGiD~~~~~i~~a~~-------------------~~~~~~l~-N---v~~ 83 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQ----NPDINYIGIELFKSVIVTAVQ-------------------KVKDSEAQ-N---VKL 83 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHH----CTTSEEEEECSCHHHHHHHHH-------------------HHHHSCCS-S---EEE
T ss_pred ceEEEEEecCcHHHHHHHHh----CCCCcEEEeecchHHHHHHHH-------------------HHHHHhcc-C---chh
Confidence 47999999999999999984 568999999999887765544 23333432 2 889
Q ss_pred eecchhhhhhhc-CCcEeEEEEcCCCCCCcH---------HHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHH
Q 041517 237 SSGSALTKLCEW-GVVGDLIEIDAGHDFNSA---------WADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAK 306 (327)
Q Consensus 237 ~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v---------~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~ 306 (327)
..+|+.+.+..+ +..+|.|++-..-+++.. ...++.+.++|+|||+|.+-. +++...+.+.+...
T Consensus 84 ~~~Da~~l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T-----D~~~y~~~~~~~~~ 158 (204)
T d2fcaa1 84 LNIDADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT-----DNRGLFEYSLKSFS 158 (204)
T ss_dssp ECCCGGGHHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE-----SCHHHHHHHHHHHH
T ss_pred cccchhhhhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE-----CChHHHHHHHHHHH
Confidence 999987755333 578999988654333221 257899999999999887631 23444444444444
Q ss_pred HcCC
Q 041517 307 INGL 310 (327)
Q Consensus 307 ~~gl 310 (327)
..+.
T Consensus 159 ~~~~ 162 (204)
T d2fcaa1 159 EYGL 162 (204)
T ss_dssp HHTC
T ss_pred HCCC
Confidence 4443
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.01 E-value=6.9e-10 Score=99.30 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=80.8
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
.+.++|||||||+|..++.+++. .++.+++++|. +.+.+.+++ ++...+..++
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~----~p~~~~~~~D~-~~~~~~a~~-------------------~~~~~~~~~r--- 131 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARR----APHVSATVLEM-AGTVDTARS-------------------YLKDEGLSDR--- 131 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-TTHHHHHHH-------------------HHHHTTCTTT---
T ss_pred ccCCEEEEeCCCCCHHHHHHHHh----cceeEEEEccC-HHHHHHHHH-------------------HHHHhhcccc---
Confidence 35689999999999999999985 46889999998 667776655 4444556566
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCC-CCCC--cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAG-HDFN--SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~--~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+++..+|..+. ....||+|++-.. |.+. .....|+++.+.|+|||.+++.|...
T Consensus 132 v~~~~~D~~~~---~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 132 VDVVEGDFFEP---LPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp EEEEECCTTSC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred hhhccccchhh---cccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 88888886552 2457999997543 4333 23456899999999999988887654
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=3.1e-10 Score=102.72 Aligned_cols=96 Identities=16% Similarity=0.065 Sum_probs=73.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
++.+|||||||+|..+..+++. .++.++++||+++.+.+.|++... + +
T Consensus 84 ~~~~iLDiGcG~G~~~~~l~~~----~~~~~~~giD~s~~~~~~a~~~~~-------------------------~---~ 131 (268)
T d1p91a_ 84 KATAVLDIGCGEGYYTHAFADA----LPEITTFGLDVSKVAIKAAAKRYP-------------------------Q---V 131 (268)
T ss_dssp TCCEEEEETCTTSTTHHHHHHT----CTTSEEEEEESCHHHHHHHHHHCT-------------------------T---S
T ss_pred CCCEEEEeCCCCcHHHHHHHHH----CCCCEEEEecchHhhhhhhhcccc-------------------------c---c
Confidence 5789999999999999999984 458899999999988877654210 1 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..+++.+ ++..++.||+|+.-... ..++++.+.|||||++++....
T Consensus 132 ~~~~~d~~~-l~~~~~sfD~v~~~~~~------~~~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 132 TFCVASSHR-LPFSDTSMDAIIRIYAP------CKAEELARVVKPGGWVITATPG 179 (268)
T ss_dssp EEEECCTTS-CSBCTTCEEEEEEESCC------CCHHHHHHHEEEEEEEEEEEEC
T ss_pred cceeeehhh-ccCCCCCEEEEeecCCH------HHHHHHHHHhCCCcEEEEEeeC
Confidence 677777765 45556899999964332 1257889999999999987654
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=5.3e-10 Score=98.43 Aligned_cols=131 Identities=4% Similarity=-0.153 Sum_probs=84.6
Q ss_pred HHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh-hh
Q 041517 147 FGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI-YQ 225 (327)
Q Consensus 147 L~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~-~~ 225 (327)
+..++...+.++|||+|||.|..+.+||+. +.+|++||.++.+++.+++............. ..... ..
T Consensus 37 ~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~----~~~~~~~~ 106 (229)
T d2bzga1 37 LDTFLKGKSGLRVFFPLCGKAVEMKWFADR------GHSVVGVEISELGIQEFFTEQNLSYSEEPITE----IPGTKVFK 106 (229)
T ss_dssp HHHHHTTCCSCEEEETTCTTCTHHHHHHHT------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTT----STTCEEEE
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHHhC------CCcEEEEeCCHHHHHHHHHHhhccccccchhc----ccccceee
Confidence 333344445689999999999999999984 77999999999998877653221100000000 00000 00
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.... .+.+..+|..+.-+...+.||+|+.-+. |.. +....+++.+.++|+|||.+++....+
T Consensus 107 ~~~~---~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~ 171 (229)
T d2bzga1 107 SSSG---NISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY 171 (229)
T ss_dssp ETTS---SEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred ecCC---cEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence 0111 3888888877755556689999986643 212 334578899999999999877665554
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.00 E-value=3.8e-10 Score=99.09 Aligned_cols=105 Identities=13% Similarity=-0.037 Sum_probs=76.9
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+|||+|+++..+|+. .+ +++|++||+++.+.+.+++.. ...+ . +.
T Consensus 57 g~~VLDlGcG~G~~~~~la~~---v~-~g~V~gvDis~~~i~~a~~~a-------------------~~~~---n---i~ 107 (209)
T d1nt2a_ 57 DERVLYLGAASGTTVSHLADI---VD-EGIIYAVEYSAKPFEKLLELV-------------------RERN---N---II 107 (209)
T ss_dssp SCEEEEETCTTSHHHHHHHHH---TT-TSEEEEECCCHHHHHHHHHHH-------------------HHCS---S---EE
T ss_pred CCEEEEeCCcCCHHHHHHHHh---cc-CCeEEEEeCCHHHHHHHHHHh-------------------hccC---C---ce
Confidence 479999999999999999985 33 679999999999988775521 1111 2 66
Q ss_pred eeecchhhhh--hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKL--CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L--~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..+++.+.- ......+|+||.|-.|.. .....+.++.+.|+|||.+++.+..+
T Consensus 108 ~i~~d~~~~~~~~~~~~~vd~v~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~ 163 (209)
T d1nt2a_ 108 PLLFDASKPWKYSGIVEKVDLIYQDIAQKN-QIEILKANAEFFLKEKGEVVIMVKAR 163 (209)
T ss_dssp EECSCTTCGGGTTTTCCCEEEEEECCCSTT-HHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred EEEeeccCccccccccceEEEEEecccChh-hHHHHHHHHHHHhccCCeEEEEEEcc
Confidence 6666655421 122357899999876643 44567899999999999998876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=1.2e-10 Score=100.22 Aligned_cols=125 Identities=14% Similarity=0.042 Sum_probs=86.4
Q ss_pred HHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhcc
Q 041517 148 GNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNA 227 (327)
Q Consensus 148 ~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~ 227 (327)
..+....+.++|||||||+|..+..++ ++++||+++.+.+.+++. +
T Consensus 29 ~~~~~~~~~~~vLDiGcG~G~~~~~~~----------~~~giD~s~~~~~~a~~~------------------~------ 74 (208)
T d1vlma_ 29 QAVKCLLPEGRGVEIGVGTGRFAVPLK----------IKIGVEPSERMAEIARKR------------------G------ 74 (208)
T ss_dssp HHHHHHCCSSCEEEETCTTSTTHHHHT----------CCEEEESCHHHHHHHHHT------------------T------
T ss_pred HHHHhhCCCCeEEEECCCCcccccccc----------eEEEEeCChhhccccccc------------------c------
Confidence 333334455689999999998776653 258999999888766541 1
Q ss_pred CCcccceEeeecchhhhhhhcCCcEeEEEEcCC-CCCCcHHHHHHHHHccCCCCeEEEEEcCCCCC-------------C
Q 041517 228 IDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAG-HDFNSAWADINRAWRILRPGGVIFGHDYFTAA-------------D 293 (327)
Q Consensus 228 ~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~-h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~-------------~ 293 (327)
+.+..+++.+ ++..+++||+|+.-.. +-.+.....++++.+.|+|||.+++.+..... .
T Consensus 75 ------~~~~~~d~~~-l~~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~ 147 (208)
T d1vlma_ 75 ------VFVLKGTAEN-LPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSV 147 (208)
T ss_dssp ------CEEEECBTTB-CCSCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-C
T ss_pred ------cccccccccc-cccccccccccccccccccccccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhcccccc
Confidence 6667777655 3444689999996543 33355678899999999999999998875411 0
Q ss_pred c-hh----HHHHHHHHHHHcCCeEE
Q 041517 294 N-RG----VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 294 ~-~G----V~~Av~~f~~~~gl~v~ 313 (327)
+ .+ -.+.+..++++.|+++.
T Consensus 148 ~~~~~~~~s~~~l~~~l~~~Gf~~i 172 (208)
T d1vlma_ 148 FYKNARFFSTEELMDLMRKAGFEEF 172 (208)
T ss_dssp CSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred ccccccCCCHHHHHHHHHHcCCeEE
Confidence 0 11 13556777888898643
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.98 E-value=8.4e-10 Score=100.05 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=96.4
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+|||+|..++.+|+. + .++|+++|.++...+.+++ |+...++.++ |
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~----~-~~~V~avd~n~~a~~~~~~-------------------N~~~n~l~~~---v 159 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVY----G-KAKVIAIEKDPYTFKFLVE-------------------NIHLNKVEDR---M 159 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHH----T-CCEEEEECCCHHHHHHHHH-------------------HHHHTTCTTT---E
T ss_pred CccEEEECcceEcHHHHHHHHh----C-CcEEEEecCCHHHHHHHHH-------------------HHHHhCCCce---E
Confidence 4679999999999999999974 2 4699999999988877766 6666677666 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCC-chhHHHHHHHHHHHcCCeEE
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAAD-NRGVRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-~~GV~~Av~~f~~~~gl~v~ 313 (327)
.+..+|+.+.+. ...||.|+++--+.. ...++.++++|++||+|.+++...... .....+.+..++...|.++.
T Consensus 160 ~~~~~D~~~~~~--~~~~D~Ii~~~p~~~---~~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 160 SAYNMDNRDFPG--ENIADRILMGYVVRT---HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp EEECSCTTTCCC--CSCEEEEEECCCSSG---GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEE
T ss_pred EEEEcchHHhcc--CCCCCEEEECCCCch---HHHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceE
Confidence 888999887543 368999999754422 357788999999999998877654211 12345667788888888765
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.98 E-value=4.9e-10 Score=100.80 Aligned_cols=128 Identities=14% Similarity=0.056 Sum_probs=89.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..|..|+.- . ..+|++||+++.|.+.|++... ... . +
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~---~--~~~v~~vD~s~~~l~~a~~~~~-------------------~~~---~---~ 142 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTK---L--YATTDLLEPVKHMLEEAKRELA-------------------GMP---V---G 142 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHH---H--CSEEEEEESCHHHHHHHHHHTT-------------------TSS---E---E
T ss_pred CCCeEEEecccCChhhHHHHhh---c--CceEEEEcCCHHHHHhhhcccc-------------------ccc---c---c
Confidence 5679999999999999988753 1 4589999999999988876321 111 1 6
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCC-C--cHHHHHHHHHccCCCCeEEEEEcCCCCCC-------chh---HHHHH
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDF-N--SAWADINRAWRILRPGGVIFGHDYFTAAD-------NRG---VRRAV 301 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~-~--~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-------~~G---V~~Av 301 (327)
++..++..+ +...+++||+|++-....+ . .....++.+.+.|+|||+|++.|...... ... -.+-+
T Consensus 143 ~~~~~d~~~-~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~ 221 (254)
T d1xtpa_ 143 KFILASMET-ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHY 221 (254)
T ss_dssp EEEESCGGG-CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHH
T ss_pred eeEEccccc-cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHH
Confidence 777777655 2333578999998654322 2 23467999999999999999877544111 111 23556
Q ss_pred HHHHHHcCCeEE
Q 041517 302 NLFAKINGLKVQ 313 (327)
Q Consensus 302 ~~f~~~~gl~v~ 313 (327)
.+++++.|+++.
T Consensus 222 ~~l~~~aGf~ii 233 (254)
T d1xtpa_ 222 KRLFNESGVRVV 233 (254)
T ss_dssp HHHHHHHTCCEE
T ss_pred HHHHHHcCCEEE
Confidence 777888899864
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.95 E-value=5.7e-09 Score=97.04 Aligned_cols=147 Identities=12% Similarity=0.022 Sum_probs=101.8
Q ss_pred hHHHHHHHHHhhc-CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHH
Q 041517 142 SYGAVFGNLIDKV-RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQ 220 (327)
Q Consensus 142 ~~g~lL~~L~~~~-~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~ 220 (327)
++...-..+++.. +.++||+++||+|..+++++.. + ..+|++||.++...+.+++
T Consensus 130 DqR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~----g-a~~V~~vD~s~~a~~~a~~------------------- 185 (317)
T d2b78a2 130 DQRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMG----G-AMATTSVDLAKRSRALSLA------------------- 185 (317)
T ss_dssp GGHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHT----T-BSEEEEEESCTTHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhC----C-CceEEEecCCHHHHHHHHH-------------------
Confidence 3433334454443 4789999999999999988763 2 4579999999999988877
Q ss_pred HHhhhccC-CcccceEeeecchhhhhhhc---CCcEeEEEEcCCC------CCCcH----HHHHHHHHccCCCCeEEEEE
Q 041517 221 NVIYQNAI-DSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGH------DFNSA----WADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 221 nv~~~g~~-~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h------~~~~v----~~dl~~~~~lL~pGGvIi~d 286 (327)
|+...++. ++ +++..+|+.+.|+.+ +++||+|++|-.. ..... .+-++.+.++|+|||+|++.
T Consensus 186 N~~~n~l~~~~---~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~ 262 (317)
T d2b78a2 186 HFEANHLDMAN---HQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAS 262 (317)
T ss_dssp HHHHTTCCCTT---EEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHhcccCcc---eEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 44444442 23 889999998877553 5799999999431 11222 23466788999999999997
Q ss_pred cCCCCCCchhHHHHHHHHHHHcCCeEEEc
Q 041517 287 DYFTAADNRGVRRAVNLFAKINGLKVQID 315 (327)
Q Consensus 287 D~~~~~~~~GV~~Av~~f~~~~gl~v~~~ 315 (327)
-+....+...-.+.+...+...+.++...
T Consensus 263 scs~~~~~~~f~~~v~~a~~~~~~~~~~~ 291 (317)
T d2b78a2 263 TNAANMTVSQFKKQIEKGFGKQKHTYLDL 291 (317)
T ss_dssp ECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eCCccCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 77653444445566666666667666543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.85 E-value=5.2e-09 Score=91.45 Aligned_cols=103 Identities=17% Similarity=0.057 Sum_probs=75.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
...|||||||.|.+++.+|+. .|+..+++||+++.+...+.+ ++...++. + |.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~----~p~~~~iGid~~~~~v~~a~~-------------------~~~~~~l~-N---i~ 84 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQ----NPDINYIGIDIQKSVLSYALD-------------------KVLEVGVP-N---IK 84 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHH----CTTSEEEEEESCHHHHHHHHH-------------------HHHHHCCS-S---EE
T ss_pred CCeEEEEeccCCHHHHHHHHH----CCCCceEEEeccHHHHHHHHH-------------------hhhhhccc-c---ce
Confidence 347999999999999999995 568999999999887765543 22333332 2 88
Q ss_pred eeecchhhhhhhc-CCcEeEEEEcCCCCCCc---------HHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEW-GVVGDLIEIDAGHDFNS---------AWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~---------v~~dl~~~~~lL~pGGvIi~ 285 (327)
+..+++.+.+..+ +.++|.|++--..+++. ....++.+.++|+|||.|.+
T Consensus 85 ~~~~da~~l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i 144 (204)
T d1yzha1 85 LLWVDGSDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF 144 (204)
T ss_dssp EEECCSSCGGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred eeecCHHHHhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence 8899887754333 47899998754322211 13678999999999998865
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=6.7e-09 Score=88.06 Aligned_cols=114 Identities=13% Similarity=-0.003 Sum_probs=73.8
Q ss_pred HHHHHHHhh-cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 145 AVFGNLIDK-VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 145 ~lL~~L~~~-~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
.++..|... .+.++|||+|||+|..++..+.. +.++++||.++.+.+.+++ |+.
T Consensus 30 ~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~------ga~vv~vD~~~~a~~~~~~-------------------N~~ 84 (171)
T d1ws6a1 30 ALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE------GWEAVLVEKDPEAVRLLKE-------------------NVR 84 (171)
T ss_dssp HHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT------TCEEEEECCCHHHHHHHHH-------------------HHH
T ss_pred HHHHHhhccccCCCeEEEeccccchhhhhhhhc------cchhhhcccCHHHHhhhhH-------------------HHH
Confidence 344555434 35789999999999998876652 6789999999998888776 444
Q ss_pred hhccCCcccceEeeecchhh-hhhhcCCcEeEEEEcCCCCCCcHHHHHHHH--HccCCCCeEEEEEc
Q 041517 224 YQNAIDSVLPVPFSSGSALT-KLCEWGVVGDLIEIDAGHDFNSAWADINRA--WRILRPGGVIFGHD 287 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~-~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~--~~lL~pGGvIi~dD 287 (327)
..+..++ +....++... .....+.+||+||+|--..... ...+..+ ..+|+|||+|++..
T Consensus 85 ~~~~~~~---v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~-~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 85 RTGLGAR---VVALPVEVFLPEAKAQGERFTVAFMAPPYAMDL-AALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp HHTCCCE---EECSCHHHHHHHHHHTTCCEEEEEECCCTTSCT-THHHHHHHHHTCEEEEEEEEEEE
T ss_pred hhccccc---eeeeehhcccccccccCCccceeEEccccccCH-HHHHHHHHHcCCcCCCeEEEEEe
Confidence 4455444 4443443322 1223357899999996321111 1223333 35899999999853
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.84 E-value=5.4e-09 Score=89.62 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
..++..|.......+|||++||+|..++..+.. | -.+|++||.++...+.+++ |+.
T Consensus 30 ealFn~l~~~~~~~~vLDlfaGsG~~g~ea~sr----G-a~~v~~ve~~~~a~~~~~~-------------------N~~ 85 (182)
T d2fhpa1 30 ESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSR----G-MDKSICIEKNFAALKVIKE-------------------NIA 85 (182)
T ss_dssp HHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHH-------------------HHH
T ss_pred HHHHHHHHHhcCCCEEEEcccccccccceeeec----c-hhHHHHHHHHHHHHHHHHH-------------------Hhh
Confidence 345566554567899999999999999987762 3 3489999999888877766 444
Q ss_pred hhccCCcccceEeeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHHH--ccCCCCeEEEEE
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRAW--RILRPGGVIFGH 286 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~~--~lL~pGGvIi~d 286 (327)
..+..++ +.+..+|+.+.|..+ +.+||+||+|--.........++.+. .+|++||+|++.
T Consensus 86 ~~~~~~~---~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 86 ITKEPEK---FEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp HHTCGGG---EEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhhcccc---cccccccchhhhhhhcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 3344334 888899988877553 56899999997543344556777765 479999999984
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.82 E-value=1.9e-08 Score=93.25 Aligned_cols=134 Identities=15% Similarity=0.201 Sum_probs=91.0
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..++.+||+++||+|..++.+|.. +.+|++||.++.+.+.|++ |+...++.+.
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~------GA~V~~VD~s~~al~~a~~-------------------N~~ln~~~~~-- 182 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA------GAEVTHVDASKKAIGWAKE-------------------NQVLAGLEQA-- 182 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT------TCEEEEECSCHHHHHHHHH-------------------HHHHHTCTTS--
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC------CCeEEEEeChHHHHHHHHH-------------------hhhhhcccCC--
Confidence 346889999999999999998874 5689999999999988877 4444444331
Q ss_pred ceEeeecchhhhhhhc---CCcEeEEEEcCCC-------CCCcHHHHH----HHHHccCCCCeEEEEEcCCC-CCCchhH
Q 041517 233 PVPFSSGSALTKLCEW---GVVGDLIEIDAGH-------DFNSAWADI----NRAWRILRPGGVIFGHDYFT-AADNRGV 297 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l---~~~fDLIfIDa~h-------~~~~v~~dl----~~~~~lL~pGGvIi~dD~~~-~~~~~GV 297 (327)
.+++..+|+.+.|... +.+||+|++|--. .......++ +.+..+|+|||.+++-.... ..+....
T Consensus 183 ~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s~~~s~~~~ 262 (309)
T d2igta1 183 PIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSM 262 (309)
T ss_dssp CEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHH
T ss_pred cEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCCCCCHHHH
Confidence 2899999998877543 5899999999331 112233443 45678999998544433332 2222235
Q ss_pred HHHHHHHHHHcCCeEE
Q 041517 298 RRAVNLFAKINGLKVQ 313 (327)
Q Consensus 298 ~~Av~~f~~~~gl~v~ 313 (327)
.+.+.+.+...+.++.
T Consensus 263 ~~~~~~~~~~ag~~v~ 278 (309)
T d2igta1 263 HELMRETMRGAGGVVA 278 (309)
T ss_dssp HHHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHhcCCcce
Confidence 5666666666665553
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.2e-08 Score=95.01 Aligned_cols=125 Identities=12% Similarity=0.153 Sum_probs=86.5
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
++..+++.. +..+|||||||+|..++.+|+. .+..+++|||+++.+.+.|++... .|..+.
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~----~~~~~~~Gid~s~~~~~~a~~~~~------------~~~~~~ 202 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAA----TNCKHHYGVEKADIPAKYAETMDR------------EFRKWM 202 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHH----CCCSEEEEEECSHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHH----hCCCeEEEEeCCHHHHHHHHHHHH------------HHHHHh
Confidence 444444433 3579999999999999999974 336789999999999988876432 222333
Q ss_pred hhhccCCcccceEeeecchhhhhhhcC--CcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWG--VVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~--~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
...|... .+|.+..||..+. +..+ ...|+||+..-.-.+.....+.++++.|||||.||.-...
T Consensus 203 ~~~g~~~--~~i~~~~gd~~~~-~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~ 268 (328)
T d1nw3a_ 203 KWYGKKH--AEYTLERGDFLSE-EWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF 268 (328)
T ss_dssp HHHTCCC--CCEEEEECCTTSH-HHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred hhccccC--CceEEEECccccc-ccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 3333321 2389999987652 2111 2358999865443456678899999999999999876544
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=1.3e-08 Score=94.20 Aligned_cols=106 Identities=16% Similarity=0.120 Sum_probs=73.5
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.++|||||||+|..++.+|++ + ..+|+++|.++ +...+++ ++...+..++
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~----G-a~~V~avd~s~-~~~~a~~-------------------~~~~~~~~~~-- 88 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKH----G-AKHVIGVDMSS-IIEMAKE-------------------LVELNGFSDK-- 88 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT----C-CSEEEEEESST-HHHHHHH-------------------HHHHTTCTTT--
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHh----C-CCEEEEEeCCH-HHHHHHH-------------------HHHHhCcccc--
Confidence 457899999999999999988884 3 35899999885 5555554 3333444445
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCC---CCCCc-HHHHHHHHHccCCCCeEEEEEc
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAG---HDFNS-AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~---h~~~~-v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.+..++..+. +..+++||+|+.... ..++. ....+....++|+|||+|+-+-
T Consensus 89 -i~~i~~~~~~l-~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~ 145 (328)
T d1g6q1_ 89 -ITLLRGKLEDV-HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDK 145 (328)
T ss_dssp -EEEEESCTTTS-CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCE
T ss_pred -ceEEEeehhhc-cCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEeee
Confidence 78888887663 333578999997532 22233 3345666778999999997433
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=4.7e-09 Score=94.48 Aligned_cols=112 Identities=7% Similarity=-0.066 Sum_probs=74.7
Q ss_pred EEEEEcCcchHHHHHHHHHhccCC--CCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 158 VIIEVGSFLGASALHMANLTRQLG--LDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~--~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
+|||||||+|..+..|+..+.... ...++++||+++.|.+.+++... ....-.. +.+.
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~-------------------~~~~~~~-~~~~ 102 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVA-------------------KISNLEN-VKFA 102 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHT-------------------TCCSCTT-EEEE
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHh-------------------hcccccc-cccc
Confidence 799999999999999988654322 24578999999999887766321 0000000 1133
Q ss_pred eeecchhhhh-----hhcCCcEeEEEEc-CCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 236 FSSGSALTKL-----CEWGVVGDLIEID-AGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 236 ~~~gda~~~L-----~~l~~~fDLIfID-a~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+......+.. ...+.+||+|+.= +-|..++....++.+.++|+|||+|++....
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 103 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp EECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred chhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 3344333221 1225799999964 4444556778999999999999988876553
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.78 E-value=1.8e-08 Score=93.45 Aligned_cols=138 Identities=14% Similarity=-0.001 Sum_probs=95.1
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCcc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDSV 231 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~v 231 (327)
.-.|++||.||.|.|..+..+++ ..+..+|++||+++...+.+++++. ..... -...+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~----~~~~~~v~~VEiD~~Vi~~a~~~f~----------------~~~~~~~~d~r- 133 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLK----HPTVEKAVMVDIDGELVEVAKRHMP----------------EWHQGAFDDPR- 133 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT----STTCCEEEEEESCHHHHHHHHHHCH----------------HHHTTGGGCTT-
T ss_pred CCCcceEEEeCCCchHHHHHHHh----cCCcceEEEecCCHHHHHHHHhcCc----------------ccccCccCCCc-
Confidence 44689999999999999888776 4567899999999999998887642 11100 01223
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCC---c-----HHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHH
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN---S-----AWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNL 303 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~---~-----v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~ 303 (327)
+++..+|+.+.+...+.+||+|++|....+. + ..+.++.+.++|+|||++++.-.........+.+.+..
T Consensus 134 --v~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~ 211 (312)
T d1uira_ 134 --AVLVIDDARAYLERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHR 211 (312)
T ss_dssp --EEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHH
T ss_pred --eEEEEchHHHHhhhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHH
Confidence 8899999999998878899999999854321 1 25678999999999999998432111111234455544
Q ss_pred HHHHcCCeEE
Q 041517 304 FAKINGLKVQ 313 (327)
Q Consensus 304 f~~~~gl~v~ 313 (327)
-+++..-.+.
T Consensus 212 tl~~~F~~V~ 221 (312)
T d1uira_ 212 TVREAFRYVR 221 (312)
T ss_dssp HHHTTCSEEE
T ss_pred HHHHhCceEE
Confidence 4444443443
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=1.2e-08 Score=94.27 Aligned_cols=104 Identities=18% Similarity=0.133 Sum_probs=73.9
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
..+.++|||||||+|..++.+|++ + ..+|++||.++. ...+++ ++...+..++
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~----G-a~~V~avd~s~~-~~~a~~-------------------~~~~n~~~~~-- 83 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKA----G-ARKVIGIECSSI-SDYAVK-------------------IVKANKLDHV-- 83 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT----T-CSEEEEEECSTT-HHHHHH-------------------HHHHTTCTTT--
T ss_pred cCCcCEEEEEecCCcHHHHHHHHh----C-CCEEEEEcCcHH-Hhhhhh-------------------HHHHhCCccc--
Confidence 346789999999999999998884 3 358999999864 444443 3334455555
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCC---CC-cHHHHHHHHHccCCCCeEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHD---FN-SAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~---~~-~v~~dl~~~~~lL~pGGvIi~ 285 (327)
|.+..++..+. ....++||+|+.+.... ++ .....++.+.++|+|||+|+-
T Consensus 84 -v~~~~~~~~~~-~~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 84 -VTIIKGKVEEV-ELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp -EEEEESCTTTC-CCSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred -cceEeccHHHc-ccccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 88888887763 33347999999764321 22 234567788899999999874
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.77 E-value=8.7e-09 Score=92.49 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=78.1
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||||+|..+..+++. .|+.+++++|. +++.+.+++ ++...+..++ +
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~----~P~~~~~~~Dl-p~~~~~a~~-------------------~~~~~~~~~r---i 133 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALR----APHLRGTLVEL-AGPAERARR-------------------RFADAGLADR---V 133 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC-HHHHHHHHH-------------------HHHHTTCTTT---E
T ss_pred cCCEEEEECCCCCHHHHHHHHh----hcCcEEEEecC-hHHHHHHHH-------------------HHhhcCCcce---e
Confidence 4689999999999999999985 45889999997 556665554 4445566666 7
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCCC--cHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDFN--SAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~~--~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+..++..+. ++..+|+|++-. -|.++ .....|+++.+.|+|||.+++.|..
T Consensus 134 ~~~~~d~~~~---~p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 134 TVAEGDFFKP---LPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp EEEECCTTSC---CSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eeeeeecccc---ccccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 7877775542 345699998753 35443 3456689999999999988877764
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=5.6e-08 Score=88.53 Aligned_cols=136 Identities=17% Similarity=0.190 Sum_probs=94.9
Q ss_pred chHHHHHHHHHhhc--CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 141 GSYGAVFGNLIDKV--RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 141 ~~~g~lL~~L~~~~--~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
+++..++...+... ++.+|||+|||+|..++.+|.. .++.+|+++|+++...+.|++
T Consensus 92 peTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~----~p~~~v~avDis~~Al~~A~~----------------- 150 (274)
T d2b3ta1 92 PDTECLVEQALARLPEQPCRILDLGTGTGAIALALASE----RPDCEIIAVDRMPDAVSLAQR----------------- 150 (274)
T ss_dssp TTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHH----CTTSEEEEECSSHHHHHHHHH-----------------
T ss_pred cchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhh----CCcceeeeccchhHHHhHHHH-----------------
Confidence 35555555554433 3678999999999999999985 358899999999999998887
Q ss_pred HHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC-------------CCCc-------------HHHHHHH
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH-------------DFNS-------------AWADINR 272 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h-------------~~~~-------------v~~dl~~ 272 (327)
|+...+. .+ |.+..+|-.+.++ +.+||+|+.+--- .+++ ....++.
T Consensus 151 --Na~~~~~-~~---v~~~~~d~~~~~~--~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~ 222 (274)
T d2b3ta1 151 --NAQHLAI-KN---IHILQSDWFSALA--GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQ 222 (274)
T ss_dssp --HHHHHTC-CS---EEEECCSTTGGGT--TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHH
T ss_pred --HHHHhCc-cc---ceeeecccccccC--CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHH
Confidence 4444444 23 8888888766544 3689999975210 0111 2345678
Q ss_pred HHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCe
Q 041517 273 AWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLK 311 (327)
Q Consensus 273 ~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~ 311 (327)
+.++|+|||.+++- +.. .-.+.+.+++..+|+.
T Consensus 223 a~~~L~~~G~l~lE-ig~-----~q~~~v~~~l~~~gf~ 255 (274)
T d2b3ta1 223 SRNALVSGGFLLLE-HGW-----QQGEAVRQAFILAGYH 255 (274)
T ss_dssp HGGGEEEEEEEEEE-CCS-----SCHHHHHHHHHHTTCT
T ss_pred HHHhcCCCCEEEEE-ECc-----hHHHHHHHHHHHCCCC
Confidence 88999999999983 322 1146677777777764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=2e-08 Score=96.28 Aligned_cols=127 Identities=12% Similarity=0.078 Sum_probs=81.0
Q ss_pred HHHHHHhhc--C-CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV--R-PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~--~-p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
++..+++.+ + ..+|||||||.|..++.+|... + ..+++|||+++.+.+.|++... .+....
T Consensus 204 ~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~---g-~~~v~GIDiS~~~i~~Ak~~~~------------e~~~~~ 267 (406)
T d1u2za_ 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALEC---G-CALSFGCEIMDDASDLTILQYE------------ELKKRC 267 (406)
T ss_dssp HHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHH---C-CSEEEEEECCHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHc---C-CCeEEEEeCCHHHHHHHHHHHH------------HHhhhh
Confidence 455555443 3 4789999999999999999852 2 4689999999999998877432 111122
Q ss_pred hhhccCCcccceEee-ecchhh--hhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 223 IYQNAIDSVLPVPFS-SGSALT--KLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~-~gda~~--~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
...+.... .+.+. .++..+ .....-..+|+|++...+-.+.....+.++++.|||||.||..+...
T Consensus 268 ~~~g~~~~--~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~ 336 (406)
T d1u2za_ 268 KLYGMRLN--NVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR 336 (406)
T ss_dssp HHTTBCCC--CEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred hhhccccc--cceeeeeechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence 22222111 12221 222111 11111245899999866545667788999999999999998876543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=1.9e-08 Score=92.34 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=72.7
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+.++|||||||+|..++.+|++ + ..+|+++|.++.+.. +++ ++...+..++
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~----G-a~~V~aid~s~~~~~-a~~-------------------~~~~~~~~~~- 85 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKA----G-AKKVLGVDQSEILYQ-AMD-------------------IIRLNKLEDT- 85 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHT----T-CSEEEEEESSTHHHH-HHH-------------------HHHHTTCTTT-
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHc----C-CCEEEEEeCHHHHHH-HHH-------------------HHHHhCCCcc-
Confidence 3456889999999999999999984 3 358999999886543 222 2233344444
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCC---CCCCcHHHH-HHHHHccCCCCeEEEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAG---HDFNSAWAD-INRAWRILRPGGVIFGH 286 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~---h~~~~v~~d-l~~~~~lL~pGGvIi~d 286 (327)
+.+..++..+. ....++||+|+.+.. ...+..... +....++|+|||+|+-+
T Consensus 86 --i~~~~~~~~~l-~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~ 141 (311)
T d2fyta1 86 --ITLIKGKIEEV-HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD 141 (311)
T ss_dssp --EEEEESCTTTS-CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred --ceEEEeeHHHh-cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence 88888887763 333579999997532 223444444 44556789999999854
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=4.4e-08 Score=83.67 Aligned_cols=114 Identities=16% Similarity=0.042 Sum_probs=82.9
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
.++..|-......+|||++||+|..++..+.. + -.+|+.||.++...+.+++ |+..
T Consensus 33 ~lfn~l~~~~~~~~vLDlfaGsG~~giealsr----G-a~~v~~VE~~~~a~~~~k~-------------------N~~~ 88 (183)
T d2fpoa1 33 TLFNWLAPVIVDAQCLDCFAGSGALGLEALSR----Y-AAGATLIEMDRAVSQQLIK-------------------NLAT 88 (183)
T ss_dssp HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT----T-CSEEEEECSCHHHHHHHHH-------------------HHHH
T ss_pred HHHhhhhcccchhhhhhhhccccceeeeEEec----C-cceeEEEEEeechhhHHHH-------------------HHhh
Confidence 45555555567889999999999999976652 3 3589999999888776665 4443
Q ss_pred hccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHH--ccCCCCeEEEEE
Q 041517 225 QNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAW--RILRPGGVIFGH 286 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~--~lL~pGGvIi~d 286 (327)
.+.. . +.+..+|+.+.+...+.+||+||+|-.-........++.+. .+|+++|+|++.
T Consensus 89 ~~~~-~---~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 89 LKAG-N---ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp TTCC-S---EEEECSCHHHHHSSCCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred cccc-c---eeeeeecccccccccccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 3322 2 67788899888877778999999996533333345555554 469999999985
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.63 E-value=9.4e-08 Score=87.91 Aligned_cols=114 Identities=10% Similarity=-0.002 Sum_probs=85.5
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
.-.|++||-||.|.|..+..+++ .++..+|++||+++...+.++++.. .....-.+.+
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~----~~~~~~i~~VEIDp~Vi~~a~~~~~----------------~~~~~~~d~r-- 144 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLK----HDSVEKAILCEVDGLVIEAARKYLK----------------QTSCGFDDPR-- 144 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTT----STTCSEEEEEESCHHHHHHHHHHCH----------------HHHGGGGCTT--
T ss_pred CCCCceEEEecCCchHHHHHHHh----cCCCceEEEecCCHHHHHHHHHHHH----------------hhcccccCCC--
Confidence 34689999999999988877776 4567899999999999999887642 1111001234
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCC--Cc----HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDF--NS----AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~--~~----v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+++..+|+.+.+...+++||+|++|...+. .. ..+.++.+.++|+|||+++..-..
T Consensus 145 -v~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 145 -AEIVIANGAEYVRKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp -EEEEESCHHHHGGGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred -cEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 888999999999888889999999964321 11 357789999999999999986543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.63 E-value=1.2e-07 Score=86.30 Aligned_cols=117 Identities=10% Similarity=0.143 Sum_probs=85.3
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
...+|++||.||.|.|..+..+.+ .+ ..+|++||+++...+.+++++.... + ..+. .......+
T Consensus 69 ~~~~p~~vLiiG~G~G~~~~~~l~----~~-~~~v~~VEiD~~Vi~~a~~~f~~~~--~-------~~~~-~~~~~d~r- 132 (276)
T d1mjfa_ 69 AHPKPKRVLVIGGGDGGTVREVLQ----HD-VDEVIMVEIDEDVIMVSKDLIKIDN--G-------LLEA-MLNGKHEK- 132 (276)
T ss_dssp HSSCCCEEEEEECTTSHHHHHHTT----SC-CSEEEEEESCHHHHHHHHHHTCTTT--T-------HHHH-HHTTCCSS-
T ss_pred cCCCCceEEEecCCchHHHHHHHH----hC-CceEEEecCCHHHHHHHHHhhhhcc--c-------hhhh-hhccCCCC-
Confidence 345789999999999988877664 34 4689999999999999988764211 0 0011 11122344
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEc
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+++..+|+.+.+.. +++||+|++|....... ..+.++.+.+.|+|||++++.-
T Consensus 133 --v~i~~~Da~~~l~~-~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 133 --AKLTIGDGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp --EEEEESCHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred --ceEEEChHHHHHhc-cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 89999999998865 67899999998654322 2467899999999999999854
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.56 E-value=2.9e-07 Score=83.63 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=87.1
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
...|++||-||-|.|..+..+.+ .++..+|++||+++...+.+++++. .....-.+.+
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~----~~~~~~i~~VEID~~Vi~~a~~~~~----------------~~~~~~~d~r-- 130 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILK----HPSVKKATLVDIDGKVIEYSKKFLP----------------SIAGKLDDPR-- 130 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTT----CTTCSEEEEEESCHHHHHHHHHHCH----------------HHHTTTTSTT--
T ss_pred cCCcceEEecCCCCcHHHHHHHh----cCCcceEEEecCCHHHHHHHHHhCh----------------hhcccccCCC--
Confidence 44689999999999999988876 4557899999999999999888642 1111111223
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+++..+|+.+.+...+.+||+|++|...+... ..+.++.+.++|+|||+++..-.
T Consensus 131 -~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 131 -VDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp -EEEEESCSHHHHHTCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred -eEEEechHHHHHhhcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 88889999998887778999999997543211 34778999999999999998643
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=3.9e-07 Score=83.23 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=84.9
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
.-.|++||-||-|.|..+..+.+ .++..+|++||+++...+.+++++. .+.. .-.+.+
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~----~~~~~~v~~vEiD~~Vv~~a~~~~~---------------~~~~-~~~d~r-- 133 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVK----HPSVESVVQCEIDEDVIQVSKKFLP---------------GMAI-GYSSSK-- 133 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTT----CTTCCEEEEEESCHHHHHHHHHHCH---------------HHHG-GGGCTT--
T ss_pred CcCcCeEEEeCCCchHHHHHHHH----cCCcceeeeccCCHHHHHHHHhhch---------------hhcc-ccCCCC--
Confidence 34689999999999999888776 4567899999999999999988652 0111 111234
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcC
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+++..+|+.+.|..-..+||+|++|...+... ..+.++.+.++|+|||++++.-.
T Consensus 134 -v~i~~~Da~~~l~~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 193 (285)
T d2o07a1 134 -LTLHVGDGFEFMKQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE 193 (285)
T ss_dssp -EEEEESCHHHHHHTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred -ceEEEccHHHHHhcCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEecc
Confidence 88999999999887778999999997643322 22568899999999999998643
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.7e-08 Score=90.75 Aligned_cols=153 Identities=16% Similarity=-0.021 Sum_probs=85.8
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhc--------
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQN-------- 226 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g-------- 226 (327)
++.+|||||||+|..++..+.. ...+|+++|.++.|.+.++++...+...-+..-..++..+.....
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~-----~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACS-----HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGG-----GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcc-----cCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 5789999999999766544431 145899999999999988765431111101111222222221100
Q ss_pred -cCCcccceEeeecch-----hhhhhhcCCcEeEEEEc----CCCCC-CcHHHHHHHHHccCCCCeEEEEEcCCCCCC--
Q 041517 227 -AIDSVLPVPFSSGSA-----LTKLCEWGVVGDLIEID----AGHDF-NSAWADINRAWRILRPGGVIFGHDYFTAAD-- 293 (327)
Q Consensus 227 -~~~~v~~V~~~~gda-----~~~L~~l~~~fDLIfID----a~h~~-~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~-- 293 (327)
....+ -.....|. ........+.||+|..= +-+.. ......++.+.++|||||++|+-++.....
T Consensus 129 ~~~~~~--~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~ 206 (263)
T d2g72a1 129 QLRARV--KRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL 206 (263)
T ss_dssp HHHHHE--EEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEE
T ss_pred Hhhhhh--hccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccc
Confidence 00000 00111111 11111113579999863 22322 245678999999999999999888765210
Q ss_pred -----chh---HHHHHHHHHHHcCCeEEE
Q 041517 294 -----NRG---VRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 294 -----~~G---V~~Av~~f~~~~gl~v~~ 314 (327)
++. -++.+.+...+.|+++..
T Consensus 207 ~~~~~~~~~~~t~e~v~~~l~~aGf~v~~ 235 (263)
T d2g72a1 207 AGEARLTVVPVSEEEVREALVRSGYKVRD 235 (263)
T ss_dssp ETTEEEECCCCCHHHHHHHHHHTTEEEEE
T ss_pred cCCcccccCCCCHHHHHHHHHHCCCeEEE
Confidence 111 456777778888988754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=1.3e-08 Score=89.62 Aligned_cols=152 Identities=13% Similarity=-0.028 Sum_probs=83.4
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCc-cccchHHHHHHHHHHhh---------h
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPM-VNGNVLLYFQFLQNVIY---------Q 225 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~-~~g~~~~~~~Fl~nv~~---------~ 225 (327)
+.+|||||||+|..++.++.. + ..+|+++|+++.+.+.+++...... .... .....+...+.. .
T Consensus 52 g~~vLDlGcG~G~~~~~~~~~----~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 125 (257)
T d2a14a1 52 GDTLIDIGSGPTIYQVLAACD----S-FQDITLSDFTDRNREELEKWLKKEPGAYDW-TPAVKFACELEGNSGRWEEKEE 125 (257)
T ss_dssp EEEEEESSCTTCCGGGTTGGG----T-EEEEEEEESCHHHHHHHHHHHHTCTTCCCC-HHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCEEEEECCCCCHhHHHHhcc----c-cCcEEEecCCHHHHHHHHHHHhhccccchh-hhHHHHHHHhccccchHHHHHH
Confidence 468999999999887776652 1 3479999999999998877542111 0000 000111111100 0
Q ss_pred ccCCcccceEeeecchhhhh-hhcCCcEeEEEEcCC-CCC----CcHHHHHHHHHccCCCCeEEEEEcCCCCCCch----
Q 041517 226 NAIDSVLPVPFSSGSALTKL-CEWGVVGDLIEIDAG-HDF----NSAWADINRAWRILRPGGVIFGHDYFTAADNR---- 295 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L-~~l~~~fDLIfIDa~-h~~----~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~---- 295 (327)
.....+..+..........+ +...+.||+|+.-.. |.. +.....++.+.++|||||++++.++.....+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~ 205 (257)
T d2a14a1 126 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR 205 (257)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred HHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccc
Confidence 00000000111000000111 222478999986433 211 23456789999999999999998876521100
Q ss_pred -----h-HHHHHHHHHHHcCCeEE
Q 041517 296 -----G-VRRAVNLFAKINGLKVQ 313 (327)
Q Consensus 296 -----G-V~~Av~~f~~~~gl~v~ 313 (327)
. -.+.+..+.+..|++|.
T Consensus 206 ~~~~~~~~~~~~~~~l~~aGf~v~ 229 (257)
T d2a14a1 206 EFSCVALEKGEVEQAVLDAGFDIE 229 (257)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEE
T ss_pred cccccCCCHHHHHHHHHHCCCEEE
Confidence 0 24566677788898754
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.51 E-value=3.9e-07 Score=83.46 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=86.9
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
-.|++||-||-|.|..+..+.+ .++..++++||+++...+.+++++. .....-...+
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~----~~~~~~i~~VEiD~~Vi~~~~~~f~----------------~~~~~~~~~r--- 135 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVAR----HASIEQIDMCEIDKMVVDVSKQFFP----------------DVAIGYEDPR--- 135 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTT----CTTCCEEEEEESCHHHHHHHHHHCH----------------HHHGGGGSTT---
T ss_pred CCCcceEEecCCchHHHHHHHh----cccceeeEEecCCHHHHHHHHHhch----------------hhhccccCCC---
Confidence 4689999999999999888776 4556799999999999999988652 1111111234
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+++..+|+.+.+... +++||+|++|...+... ..+.++.+.+.|+|||+++..-...
T Consensus 136 ~~i~~~Da~~~l~~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 136 VNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EEEEESCHHHHHHTSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred cEEEEccHHHHHhhccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 888999999988765 46899999998654322 2467899999999999999975443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.50 E-value=2.8e-07 Score=79.77 Aligned_cols=120 Identities=15% Similarity=0.153 Sum_probs=78.2
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..++|||+|||+|..++.++.. + ..+|++||+++.+.+.+++ |+...+. .
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~----g-~~~v~~vdi~~~~~~~a~~-------------------N~~~~~~-----~ 95 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLL----G-AKEVICVEVDKEAVDVLIE-------------------NLGEFKG-----K 95 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHT----T-CSEEEEEESCHHHHHHHHH-------------------HTGGGTT-----S
T ss_pred CCCCEEEECcCcchHHHHHHHHc----C-CCEEEEEcCcHHHHHHHHH-------------------HHHHcCC-----C
Confidence 45789999999999999887652 3 3599999999998888776 3332222 1
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCC---cHHHHHHHHHccCCCCe-EEEEEcCCCCCCchhHHHHHHHHHHHcC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFN---SAWADINRAWRILRPGG-VIFGHDYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~---~v~~dl~~~~~lL~pGG-vIi~dD~~~~~~~~GV~~Av~~f~~~~g 309 (327)
+++..++..+ ++.+||+|+.|..-... .....+...+. +++ +...|... ...+..+..+...+|
T Consensus 96 ~~~~~~d~~~----~~~~fD~Vi~nPP~~~~~~~~d~~~l~~~~~---~~~~v~~ih~~~-----~~~~~~i~~~~~~~g 163 (201)
T d1wy7a1 96 FKVFIGDVSE----FNSRVDIVIMNPPFGSQRKHADRPFLLKAFE---ISDVVYSIHLAK-----PEVRRFIEKFSWEHG 163 (201)
T ss_dssp EEEEESCGGG----CCCCCSEEEECCCCSSSSTTTTHHHHHHHHH---HCSEEEEEEECC-----HHHHHHHHHHHHHTT
T ss_pred ceEEECchhh----hCCcCcEEEEcCccccccccccHHHHHHHHh---hcccchhcccch-----HHHHHHHHHHHhhcC
Confidence 6666776544 46789999998642111 11223333333 333 33344333 457788888888888
Q ss_pred CeEEE
Q 041517 310 LKVQI 314 (327)
Q Consensus 310 l~v~~ 314 (327)
+.+..
T Consensus 164 ~~i~~ 168 (201)
T d1wy7a1 164 FVVTH 168 (201)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 76654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.47 E-value=1.5e-07 Score=87.09 Aligned_cols=122 Identities=11% Similarity=0.038 Sum_probs=87.5
Q ss_pred HHHHHHH--HhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 144 GAVFGNL--IDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 144 g~lL~~L--~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++|..+ +..-.|++||-||-|.|..+..+.+ .++-.+|++||+++...+.++++... +
T Consensus 93 hE~l~h~pl~~~~~pk~VLIiGgG~G~~~rellk----~~~v~~v~~VEID~~Vv~~a~~~~~~---------------~ 153 (312)
T d2b2ca1 93 QEMLAHLPMFAHPDPKRVLIIGGGDGGILREVLK----HESVEKVTMCEIDEMVIDVAKKFLPG---------------M 153 (312)
T ss_dssp HHHHHHHHHHHSSSCCEEEEESCTTSHHHHHHTT----CTTCCEEEEECSCHHHHHHHHHHCTT---------------T
T ss_pred HHHhhhHHHhcCCCCCeEEEeCCCchHHHHHHHH----cCCcceEEEEcccHHHHHHHHhhchh---------------h
Confidence 3444443 2344689999999999999888776 45567999999999999999886531 0
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----HHHHHHHHHccCCCCeEEEEEcC
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----AWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
...-...+ +++..+|+.+.+.....+||+|++|...+..+ ..+.++.+.+.|+|||+++..--
T Consensus 154 -~~~~~dpr---v~i~i~Da~~~l~~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~ 221 (312)
T d2b2ca1 154 -SCGFSHPK---LDLFCGDGFEFLKNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE 221 (312)
T ss_dssp -SGGGGCTT---EEEECSCHHHHHHHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred -ccccCCCC---eEEEEchHHHHHHhCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence 00001223 88999999999887778999999997643221 23568899999999999999743
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=1e-06 Score=79.80 Aligned_cols=134 Identities=13% Similarity=0.027 Sum_probs=89.7
Q ss_pred hHHHHHHHHHh---hcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHH
Q 041517 142 SYGAVFGNLID---KVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQF 218 (327)
Q Consensus 142 ~~g~lL~~L~~---~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~F 218 (327)
++..++..+.+ ..+..+|+|+|||+|..++.+++. ++.+|+++|+++...+.|++
T Consensus 94 eTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-----~~~~v~a~Dis~~Al~~A~~----------------- 151 (271)
T d1nv8a_ 94 ETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-----SDAIVFATDVSSKAVEIARK----------------- 151 (271)
T ss_dssp THHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-----SSCEEEEEESCHHHHHHHHH-----------------
T ss_pred hhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-----ccceeeechhhhhHHHHHHH-----------------
Confidence 44445444433 345679999999999999998863 48899999999999998887
Q ss_pred HHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcC-----------CCCCCcHH----------HHHHHHHccC
Q 041517 219 LQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDA-----------GHDFNSAW----------ADINRAWRIL 277 (327)
Q Consensus 219 l~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa-----------~h~~~~v~----------~dl~~~~~lL 277 (327)
|+...+..++ +.+..++-.+.+....++||+|+.+- ...+++.. .+-+.+-++|
T Consensus 152 --Na~~~~~~~~---~~i~~~~~~~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L 226 (271)
T d1nv8a_ 152 --NAERHGVSDR---FFVRKGEFLEPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD 226 (271)
T ss_dssp --HHHHTTCTTS---EEEEESSTTGGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC
T ss_pred --HHHHcCCCce---eEEeecccccccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhc
Confidence 5555555555 77777877776666567899998641 11123221 1223356789
Q ss_pred CCCeEEEEE-cCCCCCCchhHHHHHHHHHHHcC
Q 041517 278 RPGGVIFGH-DYFTAADNRGVRRAVNLFAKING 309 (327)
Q Consensus 278 ~pGGvIi~d-D~~~~~~~~GV~~Av~~f~~~~g 309 (327)
+|||++++- ++. -.+.|..++.+.|
T Consensus 227 ~~~G~l~~Eig~~-------Q~~~v~~l~~~~g 252 (271)
T d1nv8a_ 227 TSGKIVLMEIGED-------QVEELKKIVSDTV 252 (271)
T ss_dssp CTTCEEEEECCTT-------CHHHHTTTSTTCE
T ss_pred CCCCEEEEEECHH-------HHHHHHHHHHhCC
Confidence 999988873 322 2455666666554
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.37 E-value=3e-07 Score=79.34 Aligned_cols=117 Identities=18% Similarity=0.088 Sum_probs=82.3
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+++..| ...+.+.+||++||+|..|..+++. + ++++|+++|.++.+.+.+++..+ .
T Consensus 14 evi~~l-~~~~~~~~lD~t~G~Gghs~~il~~---~-~~~~vi~~D~d~~~l~~a~~~l~-------------------~ 69 (192)
T d1m6ya2 14 EVIEFL-KPEDEKIILDCTVGEGGHSRAILEH---C-PGCRIIGIDVDSEVLRIAEEKLK-------------------E 69 (192)
T ss_dssp HHHHHH-CCCTTCEEEETTCTTSHHHHHHHHH---C-TTCEEEEEESCHHHHHHHHHHTG-------------------G
T ss_pred HHHHhh-CCCCCCEEEEecCCCcHHHHHHHhc---C-CCCeEEEeechHHHHHHHHHhhc-------------------c
Confidence 344444 2335679999999999999999985 4 47999999999999988876321 1
Q ss_pred hccCCcccceEeeecchhh---hhhhc-CCcEeEEEEcCCCCC----------CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGSALT---KLCEW-GVVGDLIEIDAGHDF----------NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gda~~---~L~~l-~~~fDLIfIDa~h~~----------~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..++ +.+..+...+ .+..+ ..+||.|++|-+-+. ......++.+.++|+|||.+++-.+..
T Consensus 70 --~~~r---~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s 144 (192)
T d1m6ya2 70 --FSDR---VSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS 144 (192)
T ss_dssp --GTTT---EEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred --cccc---ccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence 1123 5555554333 23333 379999999966422 223456888899999999999877654
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.28 E-value=2.5e-06 Score=72.38 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=83.0
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVI 223 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~ 223 (327)
..++..|-......+|||+.||+|..++..+.- | -..++.||.+.......++ |+.
T Consensus 32 ealFn~l~~~~~~~~vLDlFaGsG~~glEalSR----G-A~~v~fVE~~~~a~~~ik~-------------------Ni~ 87 (183)
T d2ifta1 32 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSR----Q-AKKVTFLELDKTVANQLKK-------------------NLQ 87 (183)
T ss_dssp HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHT----T-CSEEEEECSCHHHHHHHHH-------------------HHH
T ss_pred HHHHHHhhhhcccceEeecccCccceeeeeeee----c-ceeeEEeecccchhhhHhh-------------------HHh
Confidence 345666655567789999999999999997762 3 4589999998877665554 554
Q ss_pred hhccCCcccceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHH--ccCCCCeEEEEEc
Q 041517 224 YQNAIDSVLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAW--RILRPGGVIFGHD 287 (327)
Q Consensus 224 ~~g~~~~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~--~lL~pGGvIi~dD 287 (327)
..+..+. ...+...+..+.+... ..+||+||+|--.........++.+. .+|+++|+|++.-
T Consensus 88 ~l~~~~~--~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 88 TLKCSSE--QAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp HTTCCTT--TEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhccccc--ccccccccccccccccccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 4443222 1556667776665433 46799999997765555556677664 4799999999863
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.13 E-value=5.6e-06 Score=71.46 Aligned_cols=69 Identities=19% Similarity=0.061 Sum_probs=51.9
Q ss_pred cCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 154 VRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 154 ~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..++|||+|||+|..++.++.. + ..+|++||.++.+.+.+++ |+..
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~----g-a~~V~~vDid~~a~~~ar~-------------------N~~~--------- 93 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLL----G-AESVTAFDIDPDAIETAKR-------------------NCGG--------- 93 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHT----T-BSEEEEEESCHHHHHHHHH-------------------HCTT---------
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc----C-CCcccccccCHHHHHHHHH-------------------cccc---------
Confidence 35789999999999998877762 3 3589999999988887766 3211
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDA 259 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa 259 (327)
+.+..+|.. .++++||+|+.|-
T Consensus 94 ~~~~~~D~~----~l~~~fD~Vi~NP 115 (197)
T d1ne2a_ 94 VNFMVADVS----EISGKYDTWIMNP 115 (197)
T ss_dssp SEEEECCGG----GCCCCEEEEEECC
T ss_pred ccEEEEehh----hcCCcceEEEeCc
Confidence 566667654 3467899999873
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.94 E-value=1.4e-05 Score=75.27 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=85.6
Q ss_pred HHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC
Q 041517 150 LIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229 (327)
Q Consensus 150 L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~ 229 (327)
+++..++.+|||..|++|.-++.+|.- .+ ..+|++.|.++...+.++++. ...+..+
T Consensus 40 ~~~~~~~~~vLD~~sasG~rsiRya~E---~~-~~~V~~nDis~~A~~~i~~N~-------------------~lN~~~~ 96 (375)
T d2dula1 40 LLNILNPKIVLDALSATGIRGIRFALE---TP-AEEVWLNDISEDAYELMKRNV-------------------MLNFDGE 96 (375)
T ss_dssp HHHHHCCSEEEESSCTTSHHHHHHHHH---SS-CSEEEEEESCHHHHHHHHHHH-------------------HHHCCSC
T ss_pred HHHHhCCCEEEEcCCCccHHHHHHHHh---CC-CCEEEEecCCHHHHHHHHHHH-------------------HhcCccc
Confidence 345568999999999999999987763 34 568999999999888887743 2222111
Q ss_pred c-----------ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 230 S-----------VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 230 ~-----------v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
. ...+.....|+...+...+..||+|.||- |-.....++.+++.++.||+|++.--.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~fDvIDiDP---fGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 97 LRESKGRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDP---FGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp CEECSSEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECC---SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred cccccccccccccceeEeehhhhhhhhHhhcCcCCcccCCC---CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 0 01266777888877777778999999996 445568999999999999999986543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.85 E-value=1.3e-05 Score=68.36 Aligned_cols=131 Identities=12% Similarity=-0.017 Sum_probs=70.8
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhc----cCCCCcEEEEEeCCCCChhhhhhhcc--cCccccchHHHHHHHHHHhhh
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTR----QLGLDSQILCIDDFRGWPGFRDKFKE--IPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r----~l~~~~~V~~ID~~~~~~~~A~~~~~--~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
...++-+|+++||++|--+..||..+. ..+..-+|++.|+++...+.|++-.. ............++. ...
T Consensus 21 ~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf---~~~ 97 (193)
T d1af7a2 21 RRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYF---MRG 97 (193)
T ss_dssp HSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHE---EEC
T ss_pred ccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhce---eec
Confidence 334567999999999986555554432 22335589999999999888875321 111111111111110 000
Q ss_pred ccCCc--------c-cceEeeecchhhhhhhcCCcEeEEEEcCCCCC---CcHHHHHHHHHccCCCCeEEEE
Q 041517 226 NAIDS--------V-LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF---NSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 226 g~~~~--------v-~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~---~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.... + -.+.+...+..+.-....++||+||+---.-| +.....++.+...|+|||++++
T Consensus 98 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 98 TGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp CTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 00000 0 00333333222211111368999998654333 2234678999999999999886
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=0.00019 Score=64.59 Aligned_cols=138 Identities=11% Similarity=0.066 Sum_probs=86.5
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++...+..+|||++++-|.=|+.||+. ..+++|+++|.++.-....++ |+...
T Consensus 93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l----~~~~~i~a~d~~~~R~~~l~~-------------------~~~r~ 149 (284)
T d1sqga2 93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEV----APEAQVVAVDIDEQRLSRVYD-------------------NLKRL 149 (284)
T ss_dssp THHHHHCCCTTCEEEEESCTTCHHHHHHHHH----CTTCEEEEEESSTTTHHHHHH-------------------HHHHT
T ss_pred ccccccCccccceeEeccCccccchhhhhhh----hhhhhhhhhhcchhhhhhHhh-------------------hhhcc
Confidence 4444555556789999999999999999985 346999999998875543332 45555
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCC-------c----------------HHHHHHHHHccCCCCeE
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFN-------S----------------AWADINRAWRILRPGGV 282 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~-------~----------------v~~dl~~~~~lL~pGGv 282 (327)
|... +.....+....-......||.|++|+--+.. . -.+-|+.+.++|+|||+
T Consensus 150 g~~~----~~~~~~~~~~~~~~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~ 225 (284)
T d1sqga2 150 GMKA----TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 225 (284)
T ss_dssp TCCC----EEEECCTTCTHHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred cccc----eeeeccccccchhcccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCce
Confidence 5432 2222222221111224689999999653321 1 12346788999999999
Q ss_pred EEEEcCCCCCCchhHHHHHHHHHHHc-CCeE
Q 041517 283 IFGHDYFTAADNRGVRRAVNLFAKIN-GLKV 312 (327)
Q Consensus 283 Ii~dD~~~~~~~~GV~~Av~~f~~~~-gl~v 312 (327)
||...+-..+. .+ .+-|+.|.+.+ ++++
T Consensus 226 lvYsTCS~~~~-EN-E~vv~~~l~~~~~~~~ 254 (284)
T d1sqga2 226 LVYATCSVLPE-EN-SLQIKAFLQRTADAEL 254 (284)
T ss_dssp EEEEESCCCGG-GT-HHHHHHHHHHCTTCEE
T ss_pred EEEeeecCchh-hC-HHHHHHHHHhCCCcEE
Confidence 99998887431 22 23455555543 4443
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.80 E-value=0.00014 Score=66.59 Aligned_cols=140 Identities=15% Similarity=0.125 Sum_probs=90.8
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++......+|||++++-|.=|..|+.. +...+.++++|.++.-.... .+|+...
T Consensus 107 l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~---~~~~~~i~a~d~~~~r~~~l-------------------~~~~~r~ 164 (313)
T d1ixka_ 107 YPPVALDPKPGEIVADMAAAPGGKTSYLAQL---MRNDGVIYAFDVDENRLRET-------------------RLNLSRL 164 (313)
T ss_dssp HHHHHHCCCTTCEEEECCSSCSHHHHHHHHH---TTTCSEEEEECSCHHHHHHH-------------------HHHHHHH
T ss_pred chhhcccCCccceeeecccchhhhhHhhhhh---cccccceeeeccCHHHHHHH-------------------HHHHHHH
Confidence 3344444445679999999999999999986 56689999999975433222 2245444
Q ss_pred ccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCc-----------------------HHHHHHHHHccCCCCeE
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNS-----------------------AWADINRAWRILRPGGV 282 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~-----------------------v~~dl~~~~~lL~pGGv 282 (327)
|..+ +.....++.. ++.....||.|++|+.-+... -.+-++.++++|+|||+
T Consensus 165 ~~~~----i~~~~~d~~~-~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~ 239 (313)
T d1ixka_ 165 GVLN----VILFHSSSLH-IGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGI 239 (313)
T ss_dssp TCCS----EEEESSCGGG-GGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred Hhhc----cccccccccc-cccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcE
Confidence 5422 5555566554 345568899999996522111 12335788999999999
Q ss_pred EEEEcCCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 283 IFGHDYFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 283 Ii~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
||...+-..+. .+ ..-|+.|.++.++++.+
T Consensus 240 lVYsTCSl~~e-EN-E~VV~~~L~~~~~~~~~ 269 (313)
T d1ixka_ 240 LVYSTCSLEPE-EN-EFVIQWALDNFDVELLP 269 (313)
T ss_dssp EEEEESCCCGG-GT-HHHHHHHHHHSSEEEEC
T ss_pred EEEeeccCChH-hH-HHHHHHHHhcCCCEEee
Confidence 99988877431 12 23344555666655543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.76 E-value=2.2e-05 Score=69.21 Aligned_cols=97 Identities=10% Similarity=0.054 Sum_probs=66.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
.++|||||||.|..++.+++. .|+.+++.+|..+- .+.++ ..++ +.
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dlp~v-i~~~~--------------------------~~~r---~~ 127 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSK----YPTIKGINFDLPHV-IEDAP--------------------------SYPG---VE 127 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHH----CTTSEEEEEECTTT-TTTCC--------------------------CCTT---EE
T ss_pred CcEEEEecCCCcHHHHHHHHH----CCCCeEEEcccHHh-hhhcc--------------------------cCCc---eE
Confidence 578999999999999999995 46889999998542 22111 1122 77
Q ss_pred eeecchhhhhhhcCCcEeEEEE---cCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEI---DAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfI---Da~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
+..++..+.+|. .|++++ -.++..+.....|+.+.+.|+|||.+++.|...
T Consensus 128 ~~~~d~~~~~P~----ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~ 181 (243)
T d1kyza2 128 HVGGDMFVSIPK----ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL 181 (243)
T ss_dssp EEECCTTTCCCC----CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred EecccccccCCC----cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence 777776554442 344333 233434556778999999999999877777653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.73 E-value=5.8e-05 Score=66.47 Aligned_cols=97 Identities=11% Similarity=0.018 Sum_probs=65.3
Q ss_pred HHHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHH
Q 041517 145 AVFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQN 221 (327)
Q Consensus 145 ~lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~n 221 (327)
.++..+++.. +..+|||||||+|..|..|++. ..+|++||.++.+.+..++...
T Consensus 8 ~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~------~~~v~avE~D~~l~~~l~~~~~----------------- 64 (235)
T d1qama_ 8 HNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR------CNFVTAIEIDHKLCKTTENKLV----------------- 64 (235)
T ss_dssp HHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH------SSEEEEECSCHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC------cCceEEEeeccchHHHHHHHhh-----------------
Confidence 3556666544 4689999999999999999985 6789999999887766544211
Q ss_pred HhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc
Q 041517 222 VIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWR 275 (327)
Q Consensus 222 v~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~ 275 (327)
. .++ +.+..+|+++. .+...-.+.++ |+.+|+-.-.-+..++.
T Consensus 65 --~---~~n---~~i~~~D~l~~--~~~~~~~~~vv-~NLPYnIss~il~~ll~ 107 (235)
T d1qama_ 65 --D---HDN---FQVLNKDILQF--KFPKNQSYKIF-GNIPYNISTDIIRKIVF 107 (235)
T ss_dssp --T---CCS---EEEECCCGGGC--CCCSSCCCEEE-EECCGGGHHHHHHHHHH
T ss_pred --c---ccc---hhhhhhhhhhc--cccccccceee-eeehhhhhHHHHHHHHh
Confidence 0 112 78888988873 22211223333 78888776666666643
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.73 E-value=3.8e-05 Score=68.00 Aligned_cols=98 Identities=12% Similarity=0.211 Sum_probs=70.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||||+|..++.+++. .|+.+++.+|. +++.++ .+..++ +
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~----~P~l~~~v~Dl----p~vi~~-----------------------~~~~~r---i 126 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISK----YPLIKGINFDL----PQVIEN-----------------------APPLSG---I 126 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC----HHHHTT-----------------------CCCCTT---E
T ss_pred CCcEEEEecCCCcHHHHHHHHH----CCCCeEEEecc----hhhhhc-----------------------cCCCCC---e
Confidence 3589999999999999999985 46889999997 222221 122334 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEc-CCCCC--CcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEID-AGHDF--NSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfID-a~h~~--~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
++..||..+.++ ..|++++- .-|.+ +....-|+.+.+.|+|||.|++.|...
T Consensus 127 ~~~~gd~~~~~p----~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~ 181 (244)
T d1fp1d2 127 EHVGGDMFASVP----QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 181 (244)
T ss_dssp EEEECCTTTCCC----CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred EEecCCcccccc----cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence 888888665433 45888864 33444 446677999999999999888888754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.73 E-value=9.4e-05 Score=62.61 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhh
Q 041517 144 GAVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFR 199 (327)
Q Consensus 144 g~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A 199 (327)
.++|..++...+..+|||.|||+|.....+.+. ......++++|+++.....+
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~---~~~~~~i~g~ei~~~~~~~~ 60 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREA---HGTAYRFVGVEIDPKALDLP 60 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHH---HCSCSEEEEEESCTTTCCCC
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHh---ccccceEEeeecCHHHHhhc
Confidence 345555655556789999999999998887764 45678899999998765443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=2.5e-05 Score=69.42 Aligned_cols=77 Identities=17% Similarity=0.019 Sum_probs=56.2
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||||||+|..++.+|..+ ++.+++++|+++.+.++|++ |+...++.++ +.
T Consensus 62 ~~~~LDiGtGsg~I~~~l~~~~----~~~~~~~~Di~~~al~~A~~-------------------N~~~n~l~~~---~~ 115 (250)
T d2h00a1 62 LRRGIDIGTGASCIYPLLGATL----NGWYFLATEVDDMCFNYAKK-------------------NVEQNNLSDL---IK 115 (250)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH----HCCEEEEEESCHHHHHHHHH-------------------HHHHTTCTTT---EE
T ss_pred cceEEEeCCCchHHHHHHHHhC----CCccccceecCHHHHHHHHH-------------------HHHHhCCCcc---ee
Confidence 4689999999999999999853 37899999999999999987 5555566666 55
Q ss_pred eeecchhhhh-h---h-cCCcEeEEEEc
Q 041517 236 FSSGSALTKL-C---E-WGVVGDLIEID 258 (327)
Q Consensus 236 ~~~gda~~~L-~---~-l~~~fDLIfID 258 (327)
+...+..+.+ . . ..++||+|+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~fD~ivsN 143 (250)
T d2h00a1 116 VVKVPQKTLLMDALKEESEIIYDFCMCN 143 (250)
T ss_dssp EEECCTTCSSTTTSTTCCSCCBSEEEEC
T ss_pred eeeeccHHhhhhhhhhcccCceeEEEec
Confidence 5544332222 1 1 13679999864
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00025 Score=64.13 Aligned_cols=134 Identities=12% Similarity=-0.040 Sum_probs=82.2
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ 225 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~ 225 (327)
+...++......+|||++++.|.-|+.||.. ++..++|+++|.++.-.... .+|+...
T Consensus 85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l---~~~~~~i~a~d~~~~R~~~l-------------------~~~l~r~ 142 (293)
T d2b9ea1 85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAAL---LKNQGKIFAFDLDAKRLASM-------------------ATLLARA 142 (293)
T ss_dssp HHHHHHCCCTTCEEEESSCTTCHHHHHHHHH---HTTCSEEEEEESCHHHHHHH-------------------HHHHHHT
T ss_pred ccccccCCCccceEEecccchhhHHHHHHHH---hcCCceEeeecCCHHHHHHH-------------------HHHHHhc
Confidence 3344444445678999999999999999986 45689999999975433222 2355555
Q ss_pred ccCCcccceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcH-------------------------HHHHHHHHccCC
Q 041517 226 NAIDSVLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSA-------------------------WADINRAWRILR 278 (327)
Q Consensus 226 g~~~~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v-------------------------~~dl~~~~~lL~ 278 (327)
|... +.+...++...-+.. .+.||.|++|+--+...+ ..-+..++ .++
T Consensus 143 g~~~----~~~~~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~ 217 (293)
T d2b9ea1 143 GVSC----CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFP 217 (293)
T ss_dssp TCCS----EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCT
T ss_pred Cccc----eeeeehhhhhhcccccccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcc
Confidence 5432 666666665432221 267999999965332110 11233445 479
Q ss_pred CCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 279 PGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 279 pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
|||.||-..+-..+ ..=.+-|+.|.+.+
T Consensus 218 ~gG~lvYsTCSl~~--~ENe~vV~~~L~~~ 245 (293)
T d2b9ea1 218 SLQRLVYSTCSLCQ--EENEDVVRDALQQN 245 (293)
T ss_dssp TCCEEEEEESCCCG--GGTHHHHHHHHTTS
T ss_pred cccEEEEeeccCCh--hHhHHHHHHHHHhC
Confidence 99999988886632 12224455555544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=8.4e-05 Score=64.32 Aligned_cols=104 Identities=12% Similarity=0.046 Sum_probs=76.0
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhh-ccCCc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQ-NAIDS 230 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~-g~~~~ 230 (327)
...++.+|+|||||.|.=++.+|-+ .|+.+++.||....-. .|++++... ++. .
T Consensus 62 ~~~~~~~ilDiGsGaG~PGi~laI~----~p~~~~~Lves~~KK~--------------------~FL~~~~~~L~L~-n 116 (207)
T d1jsxa_ 62 PYLQGERFIDVGTGPGLPGIPLSIV----RPEAHFTLLDSLGKRV--------------------RFLRQVQHELKLE-N 116 (207)
T ss_dssp GGCCSSEEEEETCTTTTTHHHHHHH----CTTSEEEEEESCHHHH--------------------HHHHHHHHHTTCS-S
T ss_pred hhhcCCceeeeeccCCceeeehhhh----cccceEEEEecchHHH--------------------HHHHHHHHHcCCc-c
Confidence 4556789999999999999999984 5689999999954322 355555432 332 2
Q ss_pred ccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 231 VLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+....+.+.+... ..+||+|..-|-. +...-++.+.+++++||.+++-=.
T Consensus 117 ---v~v~~~R~E~~~~--~~~fD~V~sRA~~---~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 117 ---IEPVQSRVEEFPS--EPPFDGVISRAFA---SLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---EEEEECCTTTSCC--CSCEEEEECSCSS---SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---eeeeccchhhhcc--ccccceehhhhhc---CHHHHHHHHHHhcCCCcEEEEECC
Confidence 6777777665322 3689999988765 344688999999999999888443
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.51 E-value=3.3e-05 Score=68.61 Aligned_cols=86 Identities=10% Similarity=0.049 Sum_probs=58.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||||||+|..|..|++. +.+|++||.++.+.+..++... . ..+ +
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~------~~~v~aIE~D~~l~~~l~~~~~-------------------~---~~n---~ 77 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKI------SKQVTSIELDSHLFNLSSEKLK-------------------L---NTR---V 77 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHH------SSEEEESSSSCSSSSSSSCTTT-------------------T---CSE---E
T ss_pred CCCeEEEECCCccHHHHHHHhh------cCceeEeeecccchhhhhhhhh-------------------h---ccc---h
Confidence 4568999999999999999985 6799999999998876654221 0 112 7
Q ss_pred EeeecchhhhhhhcC-CcEeEEEEcCCCCCCcHHHHHHHHHc
Q 041517 235 PFSSGSALTKLCEWG-VVGDLIEIDAGHDFNSAWADINRAWR 275 (327)
Q Consensus 235 ~~~~gda~~~L~~l~-~~fDLIfIDa~h~~~~v~~dl~~~~~ 275 (327)
.+..+|+++. .+. ..++. ++ |+.+|+-.-..+..++.
T Consensus 78 ~ii~~D~l~~--~~~~~~~~~-vv-~NLPY~Ist~il~~~l~ 115 (245)
T d1yuba_ 78 TLIHQDILQF--QFPNKQRYK-IV-GNIPYHLSTQIIKKVVF 115 (245)
T ss_dssp EECCSCCTTT--TCCCSSEEE-EE-EECCSSSCHHHHHHHHH
T ss_pred hhhhhhhhcc--ccccceeee-Ee-eeeehhhhHHHHHHHhh
Confidence 7888887763 232 23332 22 67777665555555543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.43 E-value=0.00011 Score=66.71 Aligned_cols=106 Identities=14% Similarity=0.071 Sum_probs=67.9
Q ss_pred hcCCCEEEEEcCcchHHHHHHHHHhccC-CCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 153 KVRPRVIIEVGSFLGASALHMANLTRQL-GLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 153 ~~~p~~VLEIGt~~G~Sal~lA~a~r~l-~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
.....+|+|.|||+|...+.+.+.++.. ....+++++|+++.+...|+. |+...+..
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~-------------------~~~~~~~~--- 172 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALV-------------------GADLQRQK--- 172 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHH-------------------HHHHHTCC---
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHH-------------------HHHHhhhh---
Confidence 3345689999999999998887755432 235689999999887776654 22222211
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCC-------------------CcHHHHHHHHHccCCCCeEEE
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDF-------------------NSAWADINRAWRILRPGGVIF 284 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~-------------------~~v~~dl~~~~~lL~pGGvIi 284 (327)
..+..++.... ....+||+|+.+---.. ......++.++.+|+|||+++
T Consensus 173 --~~~~~~d~~~~--~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 173 --MTLLHQDGLAN--LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp --CEEEESCTTSC--CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred --hhhhccccccc--cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 44445554432 23478999998733110 012234888999999999543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.36 E-value=0.0003 Score=59.48 Aligned_cols=129 Identities=18% Similarity=0.142 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh
Q 041517 145 AVFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY 224 (327)
Q Consensus 145 ~lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~ 224 (327)
+++..| ...+.+.+||+.+|.|.-+..+... +++|++||.++.+...+++...
T Consensus 9 Evl~~l-~~~~g~~~vD~T~G~GGhs~~iL~~------~~~viaiD~D~~ai~~a~~~~~-------------------- 61 (182)
T d1wg8a2 9 EALDLL-AVRPGGVYVDATLGGAGHARGILER------GGRVIGLDQDPEAVARAKGLHL-------------------- 61 (182)
T ss_dssp HHHHHH-TCCTTCEEEETTCTTSHHHHHHHHT------TCEEEEEESCHHHHHHHHHTCC--------------------
T ss_pred HHHHhc-CCCCCCEEEEeCCCCcHHHHHHhcc------cCcEEEEhhhhhHHHHHhhccc--------------------
Confidence 344444 2345689999999999888777762 7899999999987766544211
Q ss_pred hccCCcccceEeeecc---hhhhhhhcC-CcEeEEEEcCCCCCC----------cHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 225 QNAIDSVLPVPFSSGS---ALTKLCEWG-VVGDLIEIDAGHDFN----------SAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 225 ~g~~~~v~~V~~~~gd---a~~~L~~l~-~~fDLIfIDa~h~~~----------~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.+ +.+..+. ..+.++.++ +.+|.|+.|-+-... .....|+....+|++||.+++-.+..
T Consensus 62 ----~~---~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs 134 (182)
T d1wg8a2 62 ----PG---LTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS 134 (182)
T ss_dssp ----TT---EEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred ----cc---eeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence 11 3333333 233333333 679999999764321 12335788899999999999877754
Q ss_pred CCCchhHHHHHHHHHHHcCCeE
Q 041517 291 AADNRGVRRAVNLFAKINGLKV 312 (327)
Q Consensus 291 ~~~~~GV~~Av~~f~~~~gl~v 312 (327)
. -.+-|..|.++.+.++
T Consensus 135 -~----Ed~ivk~~~~e~~~k~ 151 (182)
T d1wg8a2 135 -L----EDRVVKRFLRESGLKV 151 (182)
T ss_dssp -H----HHHHHHHHHHHHCSEE
T ss_pred -c----hhHHHHHHHhhcccee
Confidence 1 1234555556665543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.27 E-value=0.00034 Score=61.58 Aligned_cols=97 Identities=13% Similarity=0.204 Sum_probs=68.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+.++|||||+|+|..++.+++. .|+.+++.+|. +++.+ ..+..++ |
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl----p~vi~-----------------------~~~~~~r---v 125 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICET----FPKLKCIVFDR----PQVVE-----------------------NLSGSNN---L 125 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHH----CTTCEEEEEEC----HHHHT-----------------------TCCCBTT---E
T ss_pred CceEEEEecCCccHHHHHHHHh----CCCCeEEEecC----HHHHH-----------------------hCcccCc---e
Confidence 4578999999999999999985 45889999997 22221 1223345 8
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcC-CCCC--CcHHHHHHHHHccCCCC---eEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDA-GHDF--NSAWADINRAWRILRPG---GVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa-~h~~--~~v~~dl~~~~~lL~pG---GvIi~dD~~ 289 (327)
++..||..+.. ..+|++++-. -|.+ +.....|+.+.+.|+|| |.+++.|..
T Consensus 126 ~~~~gD~f~~~----p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 126 TYVGGDMFTSI----PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp EEEECCTTTCC----CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred EEEecCcccCC----CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 88888876532 3579888643 3444 34456789999999998 656555544
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.18 E-value=0.00023 Score=65.33 Aligned_cols=98 Identities=10% Similarity=0.116 Sum_probs=68.0
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+|||+-||.|..++.||+. ..+|++||.++...+.|++ |....+.. .+
T Consensus 212 ~~~~vlDLycG~G~fsl~La~~------~~~V~gvE~~~~ai~~A~~-------------------na~~n~i~----n~ 262 (358)
T d1uwva2 212 PEDRVLDLFCGMGNFTLPLATQ------AASVVGVEGVPALVEKGQQ-------------------NARLNGLQ----NV 262 (358)
T ss_dssp TTCEEEEESCTTTTTHHHHHTT------SSEEEEEESCHHHHHHHHH-------------------HHHHTTCC----SE
T ss_pred CCceEEEecccccccchhcccc------ccEEEeccCcHHHHHHHHH-------------------hHHhcccc----cc
Confidence 4578999999999999999974 6899999999988887766 44433432 27
Q ss_pred Eeeecchhhhhhhc---CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEE
Q 041517 235 PFSSGSALTKLCEW---GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIF 284 (327)
Q Consensus 235 ~~~~gda~~~L~~l---~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi 284 (327)
.+..++..+.+... ...+|+|++|---..-. ..++.+.+ ++|.-+|-
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~l~~-~~~~~ivY 312 (358)
T d1uwva2 263 TFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAA--GVMQQIIK-LEPIRIVY 312 (358)
T ss_dssp EEEECCTTSCCSSSGGGTTCCSEEEECCCTTCCH--HHHHHHHH-HCCSEEEE
T ss_pred eeeecchhhhhhhhhhhhccCceEEeCCCCccHH--HHHHHHHH-cCCCEEEE
Confidence 78888877755432 46799999994332211 34455544 46655443
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=96.97 E-value=0.0034 Score=55.03 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=74.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hccCCcccc
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~~~~v~~ 233 (327)
...+++|||||.|.=++.+|-+ .|+.+++.+|....-. .|++++.. -++.+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~----~p~~~v~Lves~~KK~--------------------~FL~~v~~~L~L~n---- 121 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKIC----FPHLHVTIVDSLNKRI--------------------TFLEKLSEALQLEN---- 121 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHH----CTTCEEEEEESCHHHH--------------------HHHHHHHHHHTCSS----
T ss_pred CCCeEEeecCCCchHHHHHHHh----CCCccceeecchHHHH--------------------HHHHHHHHHhCCCC----
Confidence 3679999999999999999985 4589999999964211 35555543 24432
Q ss_pred eEeeecchhhhh--hhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALTKL--CEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~~L--~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+....+.+.+.- ....++||+|..-|-. +.-.-++.+.+++++||.+++--..
T Consensus 122 ~~i~~~R~E~~~~~~~~~~~~D~v~sRAva---~l~~ll~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 122 TTFCHDRAETFGQRKDVRESYDIVTARAVA---RLSVLSELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp EEEEESCHHHHTTCTTTTTCEEEEEEECCS---CHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred cEEEeehhhhccccccccccceEEEEhhhh---CHHHHHHHHhhhcccCCEEEEECCC
Confidence 566666665532 1234689999998865 3446889999999999999885544
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0022 Score=53.73 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=64.8
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
..+|||+||+-|.-+-.+++. .+..++++++|..+-.. + . + +.
T Consensus 23 ~~~vlDLg~aPGgw~q~~~~~---~~~~~~v~~vDl~~~~~-i--~-------------------~------------~~ 65 (180)
T d1ej0a_ 23 GMTVVDLGAAPGGWSQYVVTQ---IGGKGRIIACDLLPMDP-I--V-------------------G------------VD 65 (180)
T ss_dssp TCEEEEESCTTCHHHHHHHHH---HCTTCEEEEEESSCCCC-C--T-------------------T------------EE
T ss_pred CCeEEEEeccCCcceEEEEee---ccccceEEEeecccccc-c--C-------------------C------------ce
Confidence 569999999999999998874 46689999999976321 0 0 0 22
Q ss_pred eeecchhh-----hh-hh-cCCcEeEEEEcCCCCCCc------------HHHHHHHHHccCCCCeEEEEEcCC
Q 041517 236 FSSGSALT-----KL-CE-WGVVGDLIEIDAGHDFNS------------AWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 236 ~~~gda~~-----~L-~~-l~~~fDLIfIDa~h~~~~------------v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+..++..+ .+ .. ...++|+|..|+...... ....+..+.+.|++||.+|+-=+.
T Consensus 66 ~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 66 FLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp EEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred EeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 22222111 00 11 246899999998743211 345578889999999999986654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.002 Score=57.74 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=62.0
Q ss_pred HHHHHHhhc---CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHH
Q 041517 146 VFGNLIDKV---RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNV 222 (327)
Q Consensus 146 lL~~L~~~~---~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv 222 (327)
++..+++.. ....|||||+|.|..|..|++. +.+|++||.++.+.+..++...
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~------~~~v~aiE~D~~l~~~L~~~~~------------------ 64 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK------AKKVVACELDPRLVAELHKRVQ------------------ 64 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH------SSEEEEEESCHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc------CCcEEEEEEccchhHHHHHHHh------------------
Confidence 444444433 3568999999999999999985 5799999999887765544211
Q ss_pred hhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHc
Q 041517 223 IYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWR 275 (327)
Q Consensus 223 ~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~ 275 (327)
.....++ +.+..+|+.+. .+... +.|+ |+.+|+-.-.-+..+..
T Consensus 65 -~~~~~~~---~~~i~~D~l~~--~~~~~-~~vV--~NLPY~Iss~il~~~~~ 108 (278)
T d1zq9a1 65 -GTPVASK---LQVLVGDVLKT--DLPFF-DTCV--ANLPYQISSPFVFKLLL 108 (278)
T ss_dssp -TSTTGGG---EEEEESCTTTS--CCCCC-SEEE--EECCGGGHHHHHHHHHH
T ss_pred -hhccccc---hhhhHHHHhhh--hhhhh-hhhh--cchHHHHHHHHHHHHHh
Confidence 1111112 77788887663 22222 2332 67888766566666554
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.0005 Score=60.97 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.7
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+...|||||+|.|..|..|++. ..+|++||.++.+.+..++
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~------~~~v~aiEiD~~l~~~L~~ 61 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGER------LDQLTVIELDRDLAARLQT 61 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTT------CSCEEEECCCHHHHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHcc------CCceEEEEeccchhHHHHH
Confidence 4679999999999999999984 5789999999887765543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.37 E-value=0.0045 Score=50.40 Aligned_cols=98 Identities=15% Similarity=0.015 Sum_probs=59.8
Q ss_pred CCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||-+|+| .|..++.+|+. + +.+++++|.++.-.+.+++.. .+ .+
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~---~--G~~vi~~~~~~~k~~~a~~lG-----------------------a~-~~-- 75 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKA---M--GAETYVISRSSRKREDAMKMG-----------------------AD-HY-- 75 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---H--TCEEEEEESSSTTHHHHHHHT-----------------------CS-EE--
T ss_pred CCCEEEEECCCCcchhHHHHhhh---c--cccccccccchhHHHHhhccC-----------------------Cc-EE--
Confidence 45789999996 45556666654 3 579999999998777766532 10 00
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+..... .+........+|+|+.-...... ..++.+++.|+|||.|++--.
T Consensus 76 i~~~~~--~~~~~~~~~~~d~vi~~~~~~~~---~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 76 IATLEE--GDWGEKYFDTFDLIVVCASSLTD---IDFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp EEGGGT--SCHHHHSCSCEEEEEECCSCSTT---CCTTTGGGGEEEEEEEEECCC
T ss_pred eeccch--HHHHHhhhcccceEEEEecCCcc---chHHHHHHHhhccceEEEecc
Confidence 111111 12223345679988753222121 235678999999999988644
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.17 E-value=0.0021 Score=56.77 Aligned_cols=100 Identities=10% Similarity=0.068 Sum_probs=65.3
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hccCCcccceE
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNAIDSVLPVP 235 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~~~~v~~V~ 235 (327)
.+|||.=+|.|.-++.+|.. +++|++||-++....+.++... +...+-.. .....+ ++
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~------G~~V~~iEr~p~l~~ll~d~l~------------r~~~~~~~~~~~~~r---i~ 148 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLA------------RGYADAEIGGWLQER---LQ 148 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHH------TCCEEEEECCHHHHHHHHHHHH------------HHHHCTTTHHHHHHH---EE
T ss_pred CEEEECCCcccHHHHHHHhC------CCEEEEEccCHHHHHHHHHHHH------------HHHhCchhHHHHhhh---he
Confidence 48999999999999999985 7899999998876554443211 00000000 000112 89
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCC----cHHHHHHHHHccC
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFN----SAWADINRAWRIL 277 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~----~v~~dl~~~~~lL 277 (327)
+..+|+.+.|......||+||+|-..+.. .+...++.+..++
T Consensus 149 li~~Ds~~~L~~~~~~~DvIYlDPMFp~~~Ksa~~kk~m~~l~~l~ 194 (250)
T d2oyra1 149 LIHASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLV 194 (250)
T ss_dssp EEESCHHHHSTTCSSCCSEEEECCCCCCCCC-----HHHHHHHHHS
T ss_pred eecCcHHHHHhccCCCCCEEEECCCCccccccccchhHHHHHHhhc
Confidence 99999999998877889999999765422 2334555554443
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.91 E-value=0.026 Score=49.62 Aligned_cols=122 Identities=11% Similarity=0.002 Sum_probs=75.5
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceE
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVP 235 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~ 235 (327)
.++|+|+||+.|.-+-.++.. .....+.++++--...+. ..... . +..|+ +.
T Consensus 67 ~~~vvDlG~~pGgws~~~a~~----~~v~~V~g~~iG~d~~e~-P~~~~---~---------~~~ni-----------~~ 118 (257)
T d2p41a1 67 EGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEE-PIPMS---T---------YGWNL-----------VR 118 (257)
T ss_dssp CEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCC-CCCCC---S---------TTGGG-----------EE
T ss_pred CCeEEEecCCCChHHHHHHhh----cCCCceeEEEecCccccC-Ccccc---c---------ccccc-----------cc
Confidence 468999999999999888862 335677788773211110 00000 0 00121 45
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCC-------cHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHc
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFN-------SAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKIN 308 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~-------~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~ 308 (327)
+..++....+ .+++.|+|+.|..-... -.+.-++.+.+.|+|||-.|+ -++. |.-+.|.+.++.|-...
T Consensus 119 ~~~~~dv~~l--~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv-KVl~-py~~~v~e~le~lq~~f 194 (257)
T d2p41a1 119 LQSGVDVFFI--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV-KVLN-PYMSSVIEKMEALQRKH 194 (257)
T ss_dssp EECSCCTTTS--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE-EESC-CCSHHHHHHHHHHHHHH
T ss_pred chhhhhHHhc--CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE-EECC-CCChHHHHHHHHHHHHh
Confidence 5544432222 25789999999753211 134557788899999997766 3443 55578999999998877
Q ss_pred C
Q 041517 309 G 309 (327)
Q Consensus 309 g 309 (327)
|
T Consensus 195 g 195 (257)
T d2p41a1 195 G 195 (257)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=95.77 E-value=0.011 Score=55.32 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=71.6
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCC---------cEEEEEeCCCCChhhhhhhcccCccccchHHHH
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLD---------SQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYF 216 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~---------~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~ 216 (327)
+|-.++......+|+|-.||+|...+.+.+.++..... ..++++|.++.+..+++-
T Consensus 153 ~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~--------------- 217 (425)
T d2okca1 153 AMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM--------------- 217 (425)
T ss_dssp HHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH---------------
T ss_pred hhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHh---------------
Confidence 34444433345799999999999999988876643322 349999998877766654
Q ss_pred HHHHHHhhhccCCcccceEeeecchhhhhhhcCCcEeEEEEcCCC------------------CCCcHHHHHHHHHccCC
Q 041517 217 QFLQNVIYQNAIDSVLPVPFSSGSALTKLCEWGVVGDLIEIDAGH------------------DFNSAWADINRAWRILR 278 (327)
Q Consensus 217 ~Fl~nv~~~g~~~~v~~V~~~~gda~~~L~~l~~~fDLIfIDa~h------------------~~~~v~~dl~~~~~lL~ 278 (327)
|+...+..... ..+..+++.+. .....||+|+.+--. ........++.++.+|+
T Consensus 218 ----n~~l~g~~~~~--~~i~~~d~l~~--~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk 289 (425)
T d2okca1 218 ----NLYLHGIGTDR--SPIVCEDSLEK--EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLK 289 (425)
T ss_dssp ----HHHHTTCCSSC--CSEEECCTTTS--CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEE
T ss_pred ----hhhhcCCcccc--ceeecCchhhh--hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcC
Confidence 23222321111 34455655542 224689999865211 01123457889999999
Q ss_pred CCeEEE
Q 041517 279 PGGVIF 284 (327)
Q Consensus 279 pGGvIi 284 (327)
+||.++
T Consensus 290 ~~G~~~ 295 (425)
T d2okca1 290 TGGRAA 295 (425)
T ss_dssp EEEEEE
T ss_pred CCCeEE
Confidence 999544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.27 E-value=0.013 Score=47.73 Aligned_cols=100 Identities=13% Similarity=0.059 Sum_probs=60.6
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+||=+|+| ..++..+..++.++ ..+++++|.++.-.+.++++ |.... +
T Consensus 28 ~g~~VlI~G~G--~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~-----------------------Ga~~~---i 78 (174)
T d1f8fa2 28 PASSFVTWGAG--AVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL-----------------------GATHV---I 78 (174)
T ss_dssp TTCEEEEESCS--HHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH-----------------------TCSEE---E
T ss_pred CCCEEEEeCCC--HHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc-----------------------CCeEE---E
Confidence 45689989984 44444444444455 46788999877655555443 11110 2
Q ss_pred Eeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.....+..+.+.++ ++.+|+|+.-... . ..++.+.+.++|||.+++--.
T Consensus 79 ~~~~~~~~~~i~~~t~gg~D~vid~~G~---~--~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 79 NSKTQDPVAAIKEITDGGVNFALESTGS---P--EILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp ETTTSCHHHHHHHHTTSCEEEEEECSCC---H--HHHHHHHHTEEEEEEEEECCC
T ss_pred eCCCcCHHHHHHHHcCCCCcEEEEcCCc---H--HHHHHHHhcccCceEEEEEee
Confidence 22233334434333 4579998876553 1 567899999999999887543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.15 E-value=0.022 Score=47.62 Aligned_cols=109 Identities=13% Similarity=-0.016 Sum_probs=66.5
Q ss_pred HhhcCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCC
Q 041517 151 IDKVRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAID 229 (327)
Q Consensus 151 ~~~~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~ 229 (327)
++.....+||-+|||. |..++.+|++ .+ ..+|+++|.++.-.+.++++.. .
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~---~g-a~~Vi~~d~~~~rl~~a~~~Ga-----------------------~- 72 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARL---LG-AAVVIVGDLNPARLAHAKAQGF-----------------------E- 72 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHH---TT-CSEEEEEESCHHHHHHHHHTTC-----------------------E-
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHh---hc-ccceeeecccchhhHhhhhccc-----------------------c-
Confidence 4444567899999987 5566666664 33 5699999998877777665421 0
Q ss_pred cccceEeeecchhhhhhhc--CCcEeEEEEcCCCCC----------CcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 230 SVLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDF----------NSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 230 ~v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~----------~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.+ +.....+..+.+.++ +..+|.+|-....+. ......++.+.+.++|||.|++--+.
T Consensus 73 ~~--~~~~~~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~ 142 (195)
T d1kola2 73 IA--DLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY 142 (195)
T ss_dssp EE--ETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred EE--EeCCCcCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence 00 111122222222222 356888875433221 11236799999999999999887654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.13 E-value=0.016 Score=47.47 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=61.3
Q ss_pred hhcCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCc
Q 041517 152 DKVRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDS 230 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~ 230 (327)
+..+..+||=+|||. |.+++.+|+. ++ -.+|+++|.++.-.+.++++ |.+..
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~---~G-a~~Vi~~d~~~~r~~~a~~l-----------------------Ga~~~ 76 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKL---RG-AGRIIGVGSRPICVEAAKFY-----------------------GATDI 76 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHT---TT-CSCEEEECCCHHHHHHHHHH-----------------------TCSEE
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhc---cc-ccccccccchhhhHHHHHhh-----------------------Ccccc
Confidence 333456788899965 5666666663 33 34799999987655555442 11111
Q ss_pred ccceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 231 VLPVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 231 v~~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+.+.++ +..+|+||.-.... ..++.+++.++|||.+++--+
T Consensus 77 ---i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~-----~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 77 ---LNYKNGHIEDQVMKLTNGKGVDRVIMAGGGS-----ETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp ---ECGGGSCHHHHHHHHTTTSCEEEEEECSSCT-----THHHHHHHHEEEEEEEEECCC
T ss_pred ---ccccchhHHHHHHHHhhccCcceEEEccCCH-----HHHHHHHHHHhcCCEEEEEee
Confidence 222223333333332 34599876655442 357888999999999988544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.94 E-value=0.022 Score=46.48 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=58.7
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||=+|+|. |..++.+|++ .+ -.+|+++|.++...+.+++... +.+
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~---~G-a~~Vi~~~~~~~~~~~a~~lGa------------------------~~v-- 77 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARS---LG-AENVIVIAGSPNRLKLAEEIGA------------------------DLT-- 77 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH---TT-BSEEEEEESCHHHHHHHHHTTC------------------------SEE--
T ss_pred CCCEEEEECCCccchhheecccc---cc-cccccccccccccccccccccc------------------------eEE--
Confidence 357899999853 4455555654 44 2489999998887777665421 000
Q ss_pred eEeeecchhh---hhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 234 VPFSSGSALT---KLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 234 V~~~~gda~~---~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.....+..+ .+.++ +..+|+||--... + ..++.+.+.|++||.+++-.+
T Consensus 78 i~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~--~---~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 78 LNRRETSVEERRKAIMDITHGRGADFILEATGD--S---RALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp EETTTSCHHHHHHHHHHHTTTSCEEEEEECSSC--T---THHHHHHHHEEEEEEEEECCC
T ss_pred EeccccchHHHHHHHHHhhCCCCceEEeecCCc--h---hHHHHHHHHhcCCCEEEEEee
Confidence 1111111111 11221 3469987744433 1 357888999999999887554
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.90 E-value=0.026 Score=45.25 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcc
Q 041517 152 DKVRPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSV 231 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v 231 (327)
+..+..+||=+|+| ..++..++.+|.. +.+|+++|.++.-.+.+++.. .+ .+
T Consensus 24 ~~~~g~~VlV~GaG--~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~~G-----------------------a~-~~ 75 (166)
T d1llua2 24 NARPGQWVAISGIG--GLGHVAVQYARAM--GLHVAAIDIDDAKLELARKLG-----------------------AS-LT 75 (166)
T ss_dssp TCCTTCEEEEECCS--HHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHTT-----------------------CS-EE
T ss_pred CCCCCCEEEEeecc--ccHHHHHHHHHHc--CCccceecchhhHHHhhhccC-----------------------cc-cc
Confidence 33345678889874 4444444444445 479999999876555554431 11 10
Q ss_pred cceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEc
Q 041517 232 LPVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHD 287 (327)
Q Consensus 232 ~~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD 287 (327)
+.....+..+.+......+|.++++... . ..++.+++.|+|||.+++--
T Consensus 76 --i~~~~~~~~~~~~~~~~g~~~~i~~~~~---~--~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 76 --VNARQEDPVEAIQRDIGGAHGVLVTAVS---N--SAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp --EETTTSCHHHHHHHHHSSEEEEEECCSC---H--HHHHHHHTTEEEEEEEEECC
T ss_pred --ccccchhHHHHHHHhhcCCccccccccc---c--hHHHHHHHHhcCCcEEEEEE
Confidence 2222223333333322345666665543 2 57899999999999988743
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.88 E-value=0.037 Score=44.33 Aligned_cols=102 Identities=13% Similarity=0.126 Sum_probs=59.0
Q ss_pred CCCEEEEEcCc-chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSF-LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~-~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
...+||=+|+| .|..++.+|++ . +.+|+++|.++.-.+.+++.... .+..
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~---~--Ga~vi~v~~~~~r~~~a~~~ga~------------------------~~~~ 76 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKA---Y--GAFVVCTARSPRRLEVAKNCGAD------------------------VTLV 76 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---T--TCEEEEEESCHHHHHHHHHTTCS------------------------EEEE
T ss_pred CCCEEEEEcccccchhhHhhHhh---h--cccccccchHHHHHHHHHHcCCc------------------------EEEe
Confidence 35788889986 34444445543 4 57999999988777666653210 0000
Q ss_pred eEeeecc---hhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 234 VPFSSGS---ALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 234 V~~~~gd---a~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
..-...+ ..+.+.. .+..+|+|+--... + ..++.+++.+++||.|++--...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~---~--~~~~~a~~~~~~~G~iv~~G~~~ 132 (170)
T d1e3ja2 77 VDPAKEEESSIIERIRSAIGDLPNVTIDCSGN---E--KCITIGINITRTGGTLMLVGMGS 132 (170)
T ss_dssp CCTTTSCHHHHHHHHHHHSSSCCSEEEECSCC---H--HHHHHHHHHSCTTCEEEECSCCS
T ss_pred ccccccccchhhhhhhcccccCCceeeecCCC---h--HHHHHHHHHHhcCCceEEEecCC
Confidence 0000001 1111222 24678987654443 2 56899999999999999866543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.32 E-value=0.095 Score=41.75 Aligned_cols=117 Identities=10% Similarity=-0.024 Sum_probs=68.4
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|+=||| |..+..||++++..+...+|+++|.+++..+.+++. +. +...
T Consensus 3 ~I~IIG~--G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~-----------------------~~------~~~~ 51 (171)
T d2g5ca2 3 NVLIVGV--GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL-----------------------GI------IDEG 51 (171)
T ss_dssp EEEEESC--SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT-----------------------TS------CSEE
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh-----------------------hc------chhh
Confidence 6777998 778788888877777788999999987655544331 11 1100
Q ss_pred ecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCCCCCchhHHHHHHHHHHHcCCeEEE
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFTAADNRGVRRAVNLFAKINGLKVQI 314 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~~~~~~GV~~Av~~f~~~~gl~v~~ 314 (327)
..+..+ ......|+|++-... ..+...++.+.+.++++.++ .|-..- -..+.++++.....+-+-.++
T Consensus 52 ~~~~~~---~~~~~~dlIila~p~--~~~~~vl~~l~~~~~~~~ii-~d~~s~---k~~~~~~~~~~~~~~~i~~hP 119 (171)
T d2g5ca2 52 TTSIAK---VEDFSPDFVMLSSPV--RTFREIAKKLSYILSEDATV-TDQGSV---KGKLVYDLENILGKRFVGGHP 119 (171)
T ss_dssp ESCGGG---GGGTCCSEEEECSCH--HHHHHHHHHHHHHSCTTCEE-EECCSC---CTHHHHHHHHHHGGGEECEEE
T ss_pred hhhhhh---hhccccccccccCCc--hhhhhhhhhhhccccccccc-cccccc---cHHHHHHHHHhhccccccccc
Confidence 111011 112357999986543 34556778888888887655 333322 124556666655443333443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.026 Score=45.75 Aligned_cols=95 Identities=15% Similarity=0.127 Sum_probs=57.4
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||=+|+ +.|..++.+|+. + +.++++++.+++..+.+++. |.+ .+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~---~--G~~vi~~~~~~~~~~~~~~~-----------------------Ga~-~v- 77 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARA---Y--GLKILGTAGTEEGQKIVLQN-----------------------GAH-EV- 77 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHH---T--TCEEEEEESSHHHHHHHHHT-----------------------TCS-EE-
T ss_pred CCCEEEEEeccccccccccccccc---c--Cccccccccccccccccccc-----------------------Ccc-cc-
Confidence 4568999996 456667777775 3 57899998765444443332 211 11
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+..+.+... +..+|+|+ |+.- . ..++..++.|+|||.++.-
T Consensus 78 -i~~~~~~~~~~i~~~t~~~g~d~v~-d~~g---~--~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 78 -FNHREVNYIDKIKKYVGEKGIDIII-EMLA---N--VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp -EETTSTTHHHHHHHHHCTTCEEEEE-ESCH---H--HHHHHHHHHEEEEEEEEEC
T ss_pred -cccccccHHHHhhhhhccCCceEEe-eccc---H--HHHHHHHhccCCCCEEEEE
Confidence 222233333433322 46799766 4321 1 4688899999999988874
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.072 Score=50.92 Aligned_cols=121 Identities=11% Similarity=0.065 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCCEEEEEcCcchHHHHHHHHHhccCCCC--------------cEEEEEeCCCCChhhhhhhcccCccccc
Q 041517 146 VFGNLIDKVRPRVIIEVGSFLGASALHMANLTRQLGLD--------------SQILCIDDFRGWPGFRDKFKEIPMVNGN 211 (327)
Q Consensus 146 lL~~L~~~~~p~~VLEIGt~~G~Sal~lA~a~r~l~~~--------------~~V~~ID~~~~~~~~A~~~~~~~~~~g~ 211 (327)
+|..++......+|+|-.||+|.+.+...+.++..... ..++++|.++.+..+++-
T Consensus 155 ~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~---------- 224 (524)
T d2ar0a1 155 TIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM---------- 224 (524)
T ss_dssp HHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH----------
T ss_pred hhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHH----------
Confidence 33333333334589999999999998888776543221 258999998877666543
Q ss_pred hHHHHHHHHHHhhhccCCcc-cceEeeecchhhhhhhcCCcEeEEEEcCCC---------------CCCcHHHHHHHHHc
Q 041517 212 VLLYFQFLQNVIYQNAIDSV-LPVPFSSGSALTKLCEWGVVGDLIEIDAGH---------------DFNSAWADINRAWR 275 (327)
Q Consensus 212 ~~~~~~Fl~nv~~~g~~~~v-~~V~~~~gda~~~L~~l~~~fDLIfIDa~h---------------~~~~v~~dl~~~~~ 275 (327)
|+...+....+ ..-.+..++....-.....+||+|+..--. ....-+..++.++.
T Consensus 225 ---------nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~ 295 (524)
T d2ar0a1 225 ---------NCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIE 295 (524)
T ss_dssp ---------HHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHH
T ss_pred ---------HHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHH
Confidence 22211211110 001122233222111224679999875211 01123457899999
Q ss_pred cCCCCeEEEE
Q 041517 276 ILRPGGVIFG 285 (327)
Q Consensus 276 lL~pGGvIi~ 285 (327)
.|++||.+++
T Consensus 296 ~Lk~gGr~ai 305 (524)
T d2ar0a1 296 TLHPGGRAAV 305 (524)
T ss_dssp HEEEEEEEEE
T ss_pred hccccCcEEE
Confidence 9999995544
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.099 Score=41.91 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=59.2
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+||=+|+| ..++..+..++..+ ..+|+++|.++.-.+.++++.. +.. +
T Consensus 26 ~gd~VlI~G~G--~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~Ga-----------------------~~~---~ 76 (171)
T d1pl8a2 26 LGHKVLVCGAG--PIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEIGA-----------------------DLV---L 76 (171)
T ss_dssp TTCEEEEECCS--HHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTC-----------------------SEE---E
T ss_pred CCCEEEEECCC--ccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHhCC-----------------------ccc---c
Confidence 35689999984 33344344433444 3589999998876666655321 000 1
Q ss_pred Eeeecchh---hhhh-hcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCCC
Q 041517 235 PFSSGSAL---TKLC-EWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYFT 290 (327)
Q Consensus 235 ~~~~gda~---~~L~-~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~~ 290 (327)
.....+.. +.+. ..+..+|+|+--... + ..++.++..+++||.+++--+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~---~--~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 77 QISKESPQEIARKVEGQLGCKPEVTIECTGA---E--ASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCCSEEEECSCC---H--HHHHHHHHHSCTTCEEEECSCCC
T ss_pred cccccccccccccccccCCCCceEEEeccCC---c--hhHHHHHHHhcCCCEEEEEecCC
Confidence 11111111 1111 124678886654433 2 56899999999999998866544
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.28 Score=38.98 Aligned_cols=95 Identities=14% Similarity=0.100 Sum_probs=54.5
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||=+|+|. |..++.+|+ .+ +.+++++|..+.-.+.+++. |. +.+
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak---~~--Ga~~i~~~~~~~~~~~a~~l-----------------------Ga-d~~-- 78 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAH---AM--GAHVVAFTTSEAKREAAKAL-----------------------GA-DEV-- 78 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH---HT--TCEEEEEESSGGGHHHHHHH-----------------------TC-SEE--
T ss_pred CCCEEEEeccchHHHHHHHHhh---cc--cccchhhccchhHHHHHhcc-----------------------CC-cEE--
Confidence 457888899842 333444444 33 56788899877655544432 11 110
Q ss_pred eEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 234 VPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 234 V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
+.. .+. +........+|.++....-. ..++.+.+++++||.+++--.
T Consensus 79 i~~--~~~-~~~~~~~~~~D~vid~~g~~-----~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 79 VNS--RNA-DEMAAHLKSFDFILNTVAAP-----HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp EET--TCH-HHHHTTTTCEEEEEECCSSC-----CCHHHHHTTEEEEEEEEECCC
T ss_pred EEC--chh-hHHHHhcCCCceeeeeeecc-----hhHHHHHHHHhcCCEEEEecc
Confidence 111 111 11122235799887765432 246888999999999988543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.70 E-value=0.24 Score=40.11 Aligned_cols=99 Identities=17% Similarity=-0.017 Sum_probs=62.2
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+...||=+|||. |..++.+|++ ++ -.+|+++|.+++-.+.++++.. ...
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~---~G-a~~Vi~~d~~~~r~~~a~~~Ga-----------------------~~~--- 77 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKI---AG-ASRIIAIDINGEKFPKAKALGA-----------------------TDC--- 77 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---TT-CSEEEEECSCGGGHHHHHHTTC-----------------------SEE---
T ss_pred CCCEEEEECCChHHHHHHHHHHH---hC-CceeeeeccchHHHHHHHHhCC-----------------------Ccc---
Confidence 357899999977 7777777775 44 4689999999887777766431 000
Q ss_pred eEeeecc--hhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCC-eEEEEEcC
Q 041517 234 VPFSSGS--ALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRPG-GVIFGHDY 288 (327)
Q Consensus 234 V~~~~gd--a~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pG-GvIi~dD~ 288 (327)
+.....+ ....... .++.+|++|-=... + ..++.+++.+++| |.+++--.
T Consensus 78 i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~---~--~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 78 LNPRELDKPVQDVITELTAGGVDYSLDCAGT---A--QTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp ECGGGCSSCHHHHHHHHHTSCBSEEEESSCC---H--HHHHHHHHTBCTTTCEEEECCC
T ss_pred cCCccchhhhhhhHhhhhcCCCcEEEEeccc---c--hHHHHHHHHhhcCCeEEEecCC
Confidence 1111111 1111111 24678988654443 2 5789999999996 88888544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.34 E-value=0.074 Score=42.53 Aligned_cols=100 Identities=15% Similarity=0.086 Sum_probs=58.5
Q ss_pred CCCEEEEEcCc--chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGSF--LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt~--~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||=+|++ .|..++.++++ .+ ..+|+++|.++.-.+.++++ |.+..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~---~g-~~~V~~~~~~~~~~~~~~~~-----------------------Ga~~~-- 77 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKA---VS-GATIIGVDVREEAVEAAKRA-----------------------GADYV-- 77 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHH---HT-CCEEEEEESSHHHHHHHHHH-----------------------TCSEE--
T ss_pred CCCEEEEEeccccceeeeeecccc---cc-cccccccccchhhHHHHHHc-----------------------CCcee--
Confidence 45689999963 34445555554 33 46899999987655544432 11100
Q ss_pred ceEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 233 PVPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.....+..+.+.+. +..+|+|+--... . ..++.+++.++|||.+++--..
T Consensus 78 -i~~~~~~~~~~~~~~~~~~~~d~vid~~g~---~--~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 78 -INASMQDPLAEIRRITESKGVDAVIDLNNS---E--KTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp -EETTTSCHHHHHHHHTTTSCEEEEEESCCC---H--HHHTTGGGGEEEEEEEEECCSS
T ss_pred -eccCCcCHHHHHHHHhhcccchhhhccccc---c--hHHHhhhhhcccCCEEEEeccc
Confidence 222222323322222 4569977654432 2 5678889999999999876443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.53 E-value=0.47 Score=38.24 Aligned_cols=100 Identities=11% Similarity=-0.073 Sum_probs=56.8
Q ss_pred CCCEEEEEcCcchHH-HHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFLGAS-ALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~S-al~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+...||=+|+|...+ ++.+++ .++ ..+|+++|.+++-.+.|+++.... .
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak---~~G-~~~Vi~vd~~~~kl~~Ak~~GA~~-----------------------~--- 78 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCK---SAG-ASRIIGIDLNKDKFEKAMAVGATE-----------------------C--- 78 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH---HTT-CSEEEEECSCGGGHHHHHHHTCSE-----------------------E---
T ss_pred CCCEEEEECCCchhHHHHHHHH---HcC-CceEEEecCcHHHHHHHHhcCCcE-----------------------E---
Confidence 356899999854332 333444 343 579999999999888887753200 0
Q ss_pred eEeeecc-hhhhhhh--cCCcEeEEEEcCCCCCCcHHHHHHHHHccCC-CCeEEEEEcCC
Q 041517 234 VPFSSGS-ALTKLCE--WGVVGDLIEIDAGHDFNSAWADINRAWRILR-PGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gd-a~~~L~~--l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~-pGGvIi~dD~~ 289 (327)
+.....+ ..+.+.. .+..+|.++...... ..++.....+. ++|.+++--+.
T Consensus 79 in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~-----~~~~~a~~~~~~~~G~~v~vG~~ 133 (176)
T d1d1ta2 79 ISPKDSTKPISEVLSEMTGNNVGYTFEVIGHL-----ETMIDALASCHMNYGTSVVVGVP 133 (176)
T ss_dssp ECGGGCSSCHHHHHHHHHTSCCCEEEECSCCH-----HHHHHHHTTSCTTTCEEEECSCC
T ss_pred ECccccchHHHHHHHHhccccceEEEEeCCch-----HHHHHHHHHhhcCCeEEEEEEcc
Confidence 1111111 1111111 246799888877651 34455555554 55888875543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.47 E-value=0.25 Score=39.40 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=56.1
Q ss_pred CCEEEEEcCcchHH-HHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 156 PRVIIEVGSFLGAS-ALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 156 p~~VLEIGt~~G~S-al~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
..+||=+|+|.... ++.++++ .+ ..+++++|.++.-.+.+++.. .+ .+ +
T Consensus 33 g~~vli~GaG~vG~~~~~~a~~---~g-~~~vv~~~~~~~k~~~~~~~g-----------------------a~-~~--i 82 (172)
T d1h2ba2 33 GAYVAIVGVGGLGHIAVQLLKV---MT-PATVIALDVKEEKLKLAERLG-----------------------AD-HV--V 82 (172)
T ss_dssp TCEEEEECCSHHHHHHHHHHHH---HC-CCEEEEEESSHHHHHHHHHTT-----------------------CS-EE--E
T ss_pred CCEEEEeCCChHHHHHHHHHHh---hc-CcccccccchhHHHHHHhhcc-----------------------cc-ee--e
Confidence 46888899854332 3444443 44 468899999875454444321 11 10 2
Q ss_pred Eeeecchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcC
Q 041517 235 PFSSGSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDY 288 (327)
Q Consensus 235 ~~~~gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~ 288 (327)
.....+..+.+... +..+|+|+..... . ..++..+..|++||.+++--.
T Consensus 83 ~~~~~~~~~~~~~~~~~g~d~vid~~g~---~--~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 83 DARRDPVKQVMELTRGRGVNVAMDFVGS---Q--ATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp ETTSCHHHHHHHHTTTCCEEEEEESSCC---H--HHHHHGGGGEEEEEEEEECCC
T ss_pred cCcccHHHHHHHhhCCCCceEEEEecCc---c--hHHHHHHHHHhCCCEEEEEeC
Confidence 21122222222221 3569988766553 1 468999999999998887543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=90.87 E-value=0.36 Score=38.84 Aligned_cols=100 Identities=14% Similarity=-0.015 Sum_probs=57.7
Q ss_pred CCCEEEEEcCcchH-HHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFLGA-SALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~G~-Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||=+|+|... +++.+|+ .++ ..+|+++|.++.-.+.++++.. +..
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak---~~G-~~~Vi~~d~~~~kl~~a~~lGa-----------------------~~~--- 76 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCK---AAG-ASRIIGVGTHKDKFPKAIELGA-----------------------TEC--- 76 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH---HHT-CSEEEEECSCGGGHHHHHHTTC-----------------------SEE---
T ss_pred CCCEEEEECCCchhHHHHHHHH---HcC-CceeeccCChHHHHHHHHHcCC-----------------------cEE---
Confidence 45789999985432 2333444 344 5789999999887777766431 000
Q ss_pred eEeeecc--hhhhhhh-cCCcEeEEEEcCCCCCCcHHHHHHHHHccCCC-CeEEEEEcCC
Q 041517 234 VPFSSGS--ALTKLCE-WGVVGDLIEIDAGHDFNSAWADINRAWRILRP-GGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gd--a~~~L~~-l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~p-GGvIi~dD~~ 289 (327)
+.....+ ..+.... -++.+|.|+..... . ..++.....+++ +|.+++--..
T Consensus 77 i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~---~--~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 77 LNPKDYDKPIYEVICEKTNGGVDYAVECAGR---I--ETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp ECGGGCSSCHHHHHHHHTTSCBSEEEECSCC---H--HHHHHHHHTBCTTTCEEEECCCC
T ss_pred EcCCCchhHHHHHHHHhcCCCCcEEEEcCCC---c--hHHHHHHHHHHHhcCceEEEEEe
Confidence 1111111 1122222 24578998877654 1 456777776765 5888775543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=90.79 E-value=0.16 Score=40.63 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=59.1
Q ss_pred CCEEEEEcCc--chHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVGSF--LGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIGt~--~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
..+||=.|.+ .|..++.+|+.. +.+|++++.++.-.+.+++. |.+ .+
T Consensus 29 g~~Vlv~ga~g~vG~~~iqlak~~-----Ga~Vi~~~~s~~k~~~~~~l-----------------------Ga~-~v-- 77 (179)
T d1qora2 29 DEQFLFHAAAGGVGLIACQWAKAL-----GAKLIGTVGTAQKAQSALKA-----------------------GAW-QV-- 77 (179)
T ss_dssp TCEEEESSTTBHHHHHHHHHHHHH-----TCEEEEEESSHHHHHHHHHH-----------------------TCS-EE--
T ss_pred CCEEEEEccccccchHHHHHHHHh-----CCeEeecccchHHHHHHHhc-----------------------CCe-EE--
Confidence 4688888655 455666777752 68999999987655444332 211 11
Q ss_pred eEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 234 VPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 234 V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
+.....+..+.+.++ +..+|+ ++|+.- . ..++.....++++|.++.-...
T Consensus 78 i~~~~~d~~~~v~~~t~g~g~d~-v~d~~g--~---~~~~~~~~~l~~~G~~v~~g~~ 129 (179)
T d1qora2 78 INYREEDLVERLKEITGGKKVRV-VYDSVG--R---DTWERSLDCLQRRGLMVSFGNS 129 (179)
T ss_dssp EETTTSCHHHHHHHHTTTCCEEE-EEECSC--G---GGHHHHHHTEEEEEEEEECCCT
T ss_pred EECCCCCHHHHHHHHhCCCCeEE-EEeCcc--H---HHHHHHHHHHhcCCeeeecccc
Confidence 333344444444443 467886 555543 1 3568889999999987764433
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.11 E-value=0.3 Score=38.32 Aligned_cols=100 Identities=12% Similarity=-0.053 Sum_probs=56.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccce
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPV 234 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V 234 (327)
+..+||=+|+|.-.+ ..++.++.. +.+|+++|.++...+.++++. .+ .+ +
T Consensus 27 ~g~~vlv~G~G~iG~--~a~~~a~~~--g~~v~~~~~~~~r~~~~k~~G-----------------------a~-~~--~ 76 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGH--VAVQYAKAM--GLNVVAVDIGDEKLELAKELG-----------------------AD-LV--V 76 (168)
T ss_dssp TTCEEEEECCSTTHH--HHHHHHHHT--TCEEEEECSCHHHHHHHHHTT-----------------------CS-EE--E
T ss_pred CCCEEEEeecccchh--hhhHHHhcC--CCeEeccCCCHHHhhhhhhcC-----------------------cc-ee--c
Confidence 456888888855333 333333333 568999999776555554421 10 00 1
Q ss_pred EeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEEcCC
Q 041517 235 PFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGHDYF 289 (327)
Q Consensus 235 ~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~dD~~ 289 (327)
.....+..+.+......+|.+++|+.. . ..++.+++.|+|||.+++--..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~v~~~~~---~--~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 77 NPLKEDAAKFMKEKVGGVHAAVVTAVS---K--PAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp CTTTSCHHHHHHHHHSSEEEEEESSCC---H--HHHHHHHHHEEEEEEEEECCCC
T ss_pred ccccchhhhhcccccCCCceEEeecCC---H--HHHHHHHHHhccCCceEecccc
Confidence 112223333333333345566667542 2 5789999999999999885443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.77 E-value=0.31 Score=38.86 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=54.4
Q ss_pred CCEEEEEc--CcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 156 PRVIIEVG--SFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 156 p~~VLEIG--t~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
..+||=.| .+.|..++.+|+. . +.++++++.+++-.+.++++ |.+ .+
T Consensus 26 g~~VlI~ga~g~vG~~~iqla~~---~--g~~vi~~~~~~~~~~~l~~~-----------------------Ga~-~v-- 74 (183)
T d1pqwa_ 26 GERVLIHSATGGVGMAAVSIAKM---I--GARIYTTAGSDAKREMLSRL-----------------------GVE-YV-- 74 (183)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHH---H--TCEEEEEESSHHHHHHHHTT-----------------------CCS-EE--
T ss_pred CCEEEEECCCCCcccccchhhcc---c--cccceeeecccccccccccc-----------------------ccc-cc--
Confidence 46788767 4455666666664 3 57888887655433333332 211 11
Q ss_pred eEeeecchhhhhhhc--CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEW--GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l--~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.....+..+.+.++ +..+|+||-=.. . ..++.+++.|+++|.++.-
T Consensus 75 i~~~~~~~~~~v~~~t~~~g~d~v~d~~g----~--~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 75 GDSRSVDFADEILELTDGYGVDVVLNSLA----G--EAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EETTCSTHHHHHHHHTTTCCEEEEEECCC----T--HHHHHHHHTEEEEEEEEEC
T ss_pred ccCCccCHHHHHHHHhCCCCEEEEEeccc----c--hHHHHHHHHhcCCCEEEEE
Confidence 222223333333332 467999884332 1 4678899999999988863
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.87 E-value=0.21 Score=44.69 Aligned_cols=42 Identities=10% Similarity=0.023 Sum_probs=33.3
Q ss_pred CCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 156 PRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 156 p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
...|||||.|.|..|..|.... ...+|++||.++.+.+.-++
T Consensus 44 ~~~VlEIGPG~G~LT~~Ll~~~----~~~~v~~iE~D~~~~~~L~~ 85 (322)
T d1i4wa_ 44 ELKVLDLYPGVGIQSAIFYNKY----CPRQYSLLEKRSSLYKFLNA 85 (322)
T ss_dssp TCEEEEESCTTCHHHHHHHHHH----CCSEEEEECCCHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHhcC----CCCEEEEEECCHHHHHHHHH
Confidence 4679999999999999998752 14689999999876664443
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.12 E-value=0.59 Score=39.31 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=49.5
Q ss_pred Eeeecchhhhhhhc-CCcEeEEEEcCCC-----------CC-CcHHHHHHHHHccCCCCeEEEEEcC-CC--CCCchhHH
Q 041517 235 PFSSGSALTKLCEW-GVVGDLIEIDAGH-----------DF-NSAWADINRAWRILRPGGVIFGHDY-FT--AADNRGVR 298 (327)
Q Consensus 235 ~~~~gda~~~L~~l-~~~fDLIfIDa~h-----------~~-~~v~~dl~~~~~lL~pGGvIi~dD~-~~--~~~~~GV~ 298 (327)
.+..||.++.|+.+ ++++||||+|--- +| +.....++++.++|+|||.+++.-. .. .....-..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~~~~~~~ 85 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEAGSGDLI 85 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCTTBCCHH
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccccccchh
Confidence 35679999999887 4899999999431 11 1123456789999999997776321 11 11111133
Q ss_pred HHHHHHHHHcCCeEE
Q 041517 299 RAVNLFAKINGLKVQ 313 (327)
Q Consensus 299 ~Av~~f~~~~gl~v~ 313 (327)
..+..+....++.+.
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (279)
T d1eg2a_ 86 SIISHMRQNSKMLLA 100 (279)
T ss_dssp HHHHHHHHHCCCEEE
T ss_pred hHHHHHHhccCceee
Confidence 455566677777664
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=88.00 E-value=0.3 Score=41.97 Aligned_cols=53 Identities=13% Similarity=0.046 Sum_probs=38.6
Q ss_pred eEeeecchhhhhhhc-CCcEeEEEEcCCC----CC----Cc-------HHHHHHHHHccCCCCeEEEEE
Q 041517 234 VPFSSGSALTKLCEW-GVVGDLIEIDAGH----DF----NS-------AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 234 V~~~~gda~~~L~~l-~~~fDLIfIDa~h----~~----~~-------v~~dl~~~~~lL~pGGvIi~d 286 (327)
=.+..||.++.|..+ ++++|||++|--. .+ .. ...-+.+++++|+|+|.|+++
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 357789999998887 4899999999321 11 01 233478889999999988764
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=87.82 E-value=0.7 Score=38.28 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=37.0
Q ss_pred Eeeecchhhhhhhc-CCcEeEEEEcCCCC--------CCc-------HHHHHHHHHccCCCCeEEEEE
Q 041517 235 PFSSGSALTKLCEW-GVVGDLIEIDAGHD--------FNS-------AWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 235 ~~~~gda~~~L~~l-~~~fDLIfIDa~h~--------~~~-------v~~dl~~~~~lL~pGGvIi~d 286 (327)
++..||.++.|+.+ ++++|||++|--.- ... ...-++++.+.|+|||.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 35689999998887 47899999994310 011 223467889999999987654
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.29 E-value=0.73 Score=42.33 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=34.9
Q ss_pred CCCEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 155 RPRVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 155 ~p~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
+...++|||+..|.++..++...+ ....+|++||+++...+..++
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~--~~~~kV~aFEP~p~n~~~Lkk 256 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTK--GKFERVWMIEPDRINLQTLQN 256 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHT--SCCSEEEEECCCHHHHHHHHH
T ss_pred CCCEEEECCcCCCHHHHHHHHhcC--CCCCEEEEEeCCHHHHHHHHH
Confidence 457899999999999998887532 335799999999876554443
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=85.61 E-value=1.1 Score=36.87 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=33.6
Q ss_pred hhcCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhh
Q 041517 152 DKVRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDK 201 (327)
Q Consensus 152 ~~~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~ 201 (327)
...+|.+||=||.|. |..++..|.. + +..|+.+|.++.-.+..++
T Consensus 25 g~V~pa~VvViGaGvaG~~Aa~~A~~---l--GA~V~v~D~~~~~~~~l~~ 70 (183)
T d1l7da1 25 GTVPPARVLVFGVGVAGLQAIATAKR---L--GAVVMATDVRAATKEQVES 70 (183)
T ss_dssp EEECCCEEEEECCSHHHHHHHHHHHH---T--TCEEEEECSCSTTHHHHHH
T ss_pred CCcCCcEEEEEcCcHHHHHHHHHHHH---c--CCEEEEEeccHHHHHHHHH
Confidence 345799999999974 5556666653 3 7899999999987665544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=85.25 E-value=1.9 Score=34.00 Aligned_cols=91 Identities=12% Similarity=0.123 Sum_probs=53.0
Q ss_pred CCCEEEEEcC--cchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCccc
Q 041517 155 RPRVIIEVGS--FLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVL 232 (327)
Q Consensus 155 ~p~~VLEIGt--~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~ 232 (327)
+..+||=.|. +.|..++.+|+. . +.++++++.+++-.+.+++. |.+ .+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~---~--G~~vi~~~~~~~~~~~~~~l-----------------------Ga~-~~- 76 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARA---M--GLRVLAAASRPEKLALPLAL-----------------------GAE-EA- 76 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHH---T--TCEEEEEESSGGGSHHHHHT-----------------------TCS-EE-
T ss_pred CCCEEEEEeccccchhhhhhhhcc---c--cccccccccccccccccccc-----------------------ccc-ee-
Confidence 4567887784 335666667774 3 57899999876554444332 211 10
Q ss_pred ceEeeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEEE
Q 041517 233 PVPFSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFGH 286 (327)
Q Consensus 233 ~V~~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~d 286 (327)
+.. .+..+.+.. +..+|+|| |..- ..++..++.|+|||.++.-
T Consensus 77 -i~~--~~~~~~~~~-~~g~D~v~-d~~G------~~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 77 -ATY--AEVPERAKA-WGGLDLVL-EVRG------KEVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp -EEG--GGHHHHHHH-TTSEEEEE-ECSC------TTHHHHHTTEEEEEEEEEC
T ss_pred -eeh--hhhhhhhhc-cccccccc-cccc------hhHHHHHHHHhcCCcEEEE
Confidence 111 111122222 45699875 5432 2367889999999988864
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.48 E-value=1.3 Score=34.63 Aligned_cols=96 Identities=15% Similarity=0.003 Sum_probs=55.1
Q ss_pred CCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccc
Q 041517 155 RPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLP 233 (327)
Q Consensus 155 ~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~ 233 (327)
+..+||=+|+|. |.+++.+|++ ++ ..+|+++|.+++-.+.++++.. +..
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~---~G-~~~vi~~~~~~~k~~~ak~lGa-----------------------~~~--- 77 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKV---AG-ASRIIGVDINKDKFARAKEFGA-----------------------TEC--- 77 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH---HT-CSEEEEECSCGGGHHHHHHHTC-----------------------SEE---
T ss_pred CCCEEEEecchhHHHHHHHHHHH---Hh-cCceEEEcccHHHHHHHHHhCC-----------------------cEE---
Confidence 356788888752 3334445553 43 5789999998887777766431 000
Q ss_pred eEeee--cchhhhhhhc-CCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 234 VPFSS--GSALTKLCEW-GVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 234 V~~~~--gda~~~L~~l-~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
+.... .+..+.+... +..+|+|+--... + ..++.+..++++||.+++
T Consensus 78 i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~---~--~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 78 INPQDFSKPIQEVLIEMTDGGVDYSFECIGN---V--KVMRAALEACHKGWGVSV 127 (176)
T ss_dssp ECGGGCSSCHHHHHHHHTTSCBSEEEECSCC---H--HHHHHHHHTBCTTTCEEE
T ss_pred EeCCchhhHHHHHHHHHcCCCCcEeeecCCC---H--HHHHHHHHhhcCCceeEE
Confidence 11111 1222222222 4568988765443 2 567888999999865554
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=82.98 E-value=1.3 Score=34.57 Aligned_cols=87 Identities=14% Similarity=0.081 Sum_probs=50.6
Q ss_pred EEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhhhccCCcccceEee
Q 041517 158 VIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIYQNAIDSVLPVPFS 237 (327)
Q Consensus 158 ~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~~g~~~~v~~V~~~ 237 (327)
+|.=||+ |..+..||+.+++. +.+|+++|.++...+.+++. +. +...
T Consensus 2 kI~iIG~--G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~-----------------------~~------~~~~ 48 (165)
T d2f1ka2 2 KIGVVGL--GLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER-----------------------QL------VDEA 48 (165)
T ss_dssp EEEEECC--SHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-----------------------TS------CSEE
T ss_pred EEEEEee--cHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHh-----------------------hc------ccee
Confidence 4666787 66666677766533 67999999986544433221 11 1000
Q ss_pred ecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEE
Q 041517 238 SGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIF 284 (327)
Q Consensus 238 ~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi 284 (327)
. +..+.+ ...|+|++-.. ...+.+.++.+.+.++++.+|+
T Consensus 49 ~-~~~~~~----~~~DiIilavp--~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 49 G-QDLSLL----QTAKIIFLCTP--IQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp E-SCGGGG----TTCSEEEECSC--HHHHHHHHHHHGGGSCTTCEEE
T ss_pred e-eecccc----cccccccccCc--Hhhhhhhhhhhhhhccccccee
Confidence 1 111222 34788888432 2345567788888888888664
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=81.62 E-value=2.4 Score=32.95 Aligned_cols=102 Identities=9% Similarity=-0.102 Sum_probs=55.5
Q ss_pred CEEEEEcCcchHHHHHHHHHhccCCCCcEEEEEeCCCCChhhhhhhcccCccccchHHHHHHHHHHhh-hccCCcccceE
Q 041517 157 RVIIEVGSFLGASALHMANLTRQLGLDSQILCIDDFRGWPGFRDKFKEIPMVNGNVLLYFQFLQNVIY-QNAIDSVLPVP 235 (327)
Q Consensus 157 ~~VLEIGt~~G~Sal~lA~a~r~l~~~~~V~~ID~~~~~~~~A~~~~~~~~~~g~~~~~~~Fl~nv~~-~g~~~~v~~V~ 235 (327)
++|.=||+| ..+..+|..+... +.+|+.+|.++...+..++... +... .+...... ..
T Consensus 2 k~iaIiGaG--~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~~~~~~-~~ 60 (184)
T d1bg6a2 2 KTYAVLGLG--NGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGA----------------IIAEGPGLAGTAH-PD 60 (184)
T ss_dssp CEEEEECCS--HHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTS----------------EEEESSSCCEEEC-CS
T ss_pred CEEEEECcc--HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC----------------Cchhhhhhhhhhh-hh
Confidence 577788984 4444444444332 6899999997654443322110 0000 00000000 11
Q ss_pred eeecchhhhhhhcCCcEeEEEEcCCCCCCcHHHHHHHHHccCCCCeEEEE
Q 041517 236 FSSGSALTKLCEWGVVGDLIEIDAGHDFNSAWADINRAWRILRPGGVIFG 285 (327)
Q Consensus 236 ~~~gda~~~L~~l~~~fDLIfIDa~h~~~~v~~dl~~~~~lL~pGGvIi~ 285 (327)
....+..+.+ ...|+|++=. . .......++.+.++|+++.+|++
T Consensus 61 ~~~~~~~e~~----~~aD~iii~v-~-~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 61 LLTSDIGLAV----KDADVILIVV-P-AIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp EEESCHHHHH----TTCSEEEECS-C-GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred hhhhhhHhHh----cCCCEEEEEE-c-hhHHHHHHHHhhhccCCCCEEEE
Confidence 1223333433 3489999843 3 23456788999999999998875
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.13 E-value=0.88 Score=36.99 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=27.8
Q ss_pred cCCCEEEEEcCcc-hHHHHHHHHHhccCCCCcEEEEEeCCCC
Q 041517 154 VRPRVIIEVGSFL-GASALHMANLTRQLGLDSQILCIDDFRG 194 (327)
Q Consensus 154 ~~p~~VLEIGt~~-G~Sal~lA~a~r~l~~~~~V~~ID~~~~ 194 (327)
.+|.+|+=||.|. |..++..|.. + +.+|+.+|.++.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~---l--GA~V~~~D~~~~ 66 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVG---L--GAQVQIFDINVE 66 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHH---T--TCEEEEEESCHH
T ss_pred CCCcEEEEECCChHHHHHHHHHhh---C--CCEEEEEeCcHH
Confidence 4699999999974 5666666664 3 699999999754
|