Citrus Sinensis ID: 041543

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------18
MEQNLQQKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQA
ccccccccEEEEEEEEEccccHHHHHHHHcccccccccccccEEEEEEccccccccEEEEEcccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEEcccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccHccccEEEEEEccccHHHHHHHHHHHccHHcHccccccEEEcccccccccEEEEEEccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEccccccccEEEEEEEEEccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
MEQNLQQKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLAtsygvhgtngepdcirycagfsipsraassstddnpppaacswskerlvTVDHVQRCLIYEMvdgnigfkSYVSTIkiipgddnnhdgqnqsagcviewsftvdpvEGLVLADLLQKYDLGLQRMAKTMEDAIVQA
MEQNLQQKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQA
MEQNLQQKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQA
*****************SRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSI*****************CSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDD*******QSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRM***********
**********GKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTMEDAI***
*******************ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPS***************CSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQA
*******KWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIP*************PAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQ*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEQNLQQKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTMEDAIVQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query179 2.2.26 [Sep-21-2011]
P59082169 Lachrymatory-factor synth N/A no 0.765 0.810 0.267 7e-12
>sp|P59082|LFS_ALLCE Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1 Back     alignment and function desciption
 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 24/161 (14%)

Query: 4   NLQQKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAG 63
           N  +KW GKV   +     +Q W L  DF N+HK   SL+    V G      C+RY  G
Sbjct: 16  NGARKWSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKG 75

Query: 64  FSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIP 123
              P                  W+KE+LV +D+      Y   +   G++ Y +T++I+ 
Sbjct: 76  IMHPIEEE-------------FWAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVE 122

Query: 124 GDDNNHDGQNQSAGCVIEWSFTVDPVEGLV---LADLLQKY 161
           G ++         G   +WSF    +EG+      ++LQ +
Sbjct: 123 GPEHK--------GSRFDWSFQCKYIEGMTESAFTEILQHW 155
Produces lacrymatory factor (propanthial S-oxide) from 1-propenylsulphenic acid, an unstable compound resulting from the degradation of trans-1-propenyl-L-cysteine sulphoxide (PRENCSO) by alliinase.
Allium cepa (taxid: 4679)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
224141719175 predicted protein [Populus trichocarpa] 0.927 0.948 0.625 2e-57
255550946 343 hypothetical protein RCOM_0800710 [Ricin 0.877 0.457 0.609 4e-52
255550948182 Lachrymatory-factor synthase precursor, 0.932 0.917 0.528 1e-51
351726086166 uncharacterized protein LOC100527896 [Gl 0.893 0.963 0.564 2e-50
225429349168 PREDICTED: uncharacterized protein LOC10 0.893 0.952 0.537 2e-48
297821999170 hypothetical protein ARALYDRAFT_901237 [ 0.854 0.9 0.532 7e-44
15225189167 polyketide cyclase/dehydrase domain prot 0.832 0.892 0.520 1e-43
388500808171 unknown [Medicago truncatula] 0.921 0.964 0.491 3e-42
449461385178 PREDICTED: uncharacterized protein LOC10 0.877 0.882 0.488 1e-41
356495923173 PREDICTED: lachrymatory-factor synthase- 0.882 0.913 0.418 2e-34
>gi|224141719|ref|XP_002324212.1| predicted protein [Populus trichocarpa] gi|222865646|gb|EEF02777.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/176 (62%), Positives = 134/176 (76%), Gaps = 10/176 (5%)

Query: 1   MEQNLQQKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRY 60
           MEQ+ Q KWEGKVS R+ +ATADQIWPL  DFFN+HK+F SLAT YG+HGTNGEP CIR+
Sbjct: 1   MEQDPQPKWEGKVSERLPKATADQIWPLLNDFFNLHKWFPSLATCYGIHGTNGEPGCIRH 60

Query: 61  CAGFSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIK 120
           C G SIPS    ++TD +  P   SWS ERL  VDHV+R L YE+VD NIGFKSYVST+K
Sbjct: 61  CEGSSIPS--TDTNTDGHSQPV--SWSSERLTVVDHVERSLSYEIVDSNIGFKSYVSTVK 116

Query: 121 IIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQKYDLGLQRMAKTMEDAI 176
           ++P  D+  D      GCVIEWSF VDPV GLVL +L++KY +GLQ+MA+ +EDA+
Sbjct: 117 VVPQGDDGQD------GCVIEWSFNVDPVAGLVLDELVRKYKVGLQQMAERLEDAV 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550946|ref|XP_002516521.1| hypothetical protein RCOM_0800710 [Ricinus communis] gi|223544341|gb|EEF45862.1| hypothetical protein RCOM_0800710 [Ricinus communis] Back     alignment and taxonomy information
>gi|255550948|ref|XP_002516522.1| Lachrymatory-factor synthase precursor, putative [Ricinus communis] gi|223544342|gb|EEF45863.1| Lachrymatory-factor synthase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351726086|ref|NP_001235323.1| uncharacterized protein LOC100527896 [Glycine max] gi|255633494|gb|ACU17105.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225429349|ref|XP_002272536.1| PREDICTED: uncharacterized protein LOC100242274 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297821999|ref|XP_002878882.1| hypothetical protein ARALYDRAFT_901237 [Arabidopsis lyrata subsp. lyrata] gi|297324721|gb|EFH55141.1| hypothetical protein ARALYDRAFT_901237 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15225189|ref|NP_180148.1| polyketide cyclase/dehydrase domain protein [Arabidopsis thaliana] gi|79323057|ref|NP_001031416.1| polyketide cyclase/dehydrase domain protein [Arabidopsis thaliana] gi|3643606|gb|AAC42253.1| hypothetical protein [Arabidopsis thaliana] gi|50253476|gb|AAT71940.1| At2g25770 [Arabidopsis thaliana] gi|56381959|gb|AAV85698.1| At2g25770 [Arabidopsis thaliana] gi|330252656|gb|AEC07750.1| polyketide cyclase/dehydrase domain protein [Arabidopsis thaliana] gi|330252657|gb|AEC07751.1| polyketide cyclase/dehydrase domain protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388500808|gb|AFK38470.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449461385|ref|XP_004148422.1| PREDICTED: uncharacterized protein LOC101204487 [Cucumis sativus] gi|449507294|ref|XP_004162990.1| PREDICTED: uncharacterized LOC101204487 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356495923|ref|XP_003516820.1| PREDICTED: lachrymatory-factor synthase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query179
TAIR|locus:2043575167 AT2G25770 "AT2G25770" [Arabido 0.620 0.664 0.537 6.9e-31
TAIR|locus:2134123157 AT4G32870 "AT4G32870" [Arabido 0.586 0.668 0.398 1.9e-21
TAIR|locus:2043575 AT2G25770 "AT2G25770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 65/121 (53%), Positives = 86/121 (71%)

Query:     7 QKWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSI 66
             +KW  KVS  +++A  D+IWPLFTDFFN+HK+  +LAT +GVHG NGE  CIR+C+GFSI
Sbjct:     8 EKWLAKVSVTLTKAKPDEIWPLFTDFFNLHKWLPTLATCHGVHGNNGEQGCIRFCSGFSI 67

Query:    67 PSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIP-GD 125
              S    S         A  WSKE+LV V+ V+R + YE+V+ N GF+SYVST+KI+P G+
Sbjct:    68 GSNGVDS---------AARWSKEKLVAVNPVERVMRYEIVESNTGFESYVSTVKILPRGE 118

Query:   126 D 126
             D
Sbjct:   119 D 119
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2134123 AT4G32870 "AT4G32870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XVIII000243
hypothetical protein (175 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
cd07821140 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1e-29
pfam10604140 pfam10604, Polyketide_cyc2, Polyketide cyclase / d 1e-13
cd07816148 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domai 4e-08
>gnl|CDD|176863 cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information 
 Score =  105 bits (265), Expect = 1e-29
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 33/169 (19%)

Query: 9   WEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPS 68
            +  VS  +  A AD++W L +DF  +HK+  ++A+     G  G    +R         
Sbjct: 1   AKVTVSVTID-APADKVWALLSDFGGLHKWHPAVASCELEGGGPG-VGAVRTVTLKDG-- 56

Query: 69  RAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNN 128
                              +ERL+ +D  +R   Y +V+G +  K+YV+TI++ P  D  
Sbjct: 57  ----------------GTVRERLLALDDAERRYSYRIVEGPLPVKNYVATIRVTPEGDG- 99

Query: 129 HDGQNQSAGCVIEWSFTVDPVEG----LVLADLLQKYDLGLQRMAKTME 173
                   G  + W+   DP EG    L  A L   Y  GL  +   +E
Sbjct: 100 --------GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140

The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate blocks substrate access to the phosphatase active site. A conserved Trp from PP2C inserts into PYL to lock the receptor in a closed formation. This group also contains Methylobacterium extorquens AM1 MxaD. The mxaD gene is located within the mxaFJGIR(S)ACKLDEHB cluster which encodes proteins involved in methanol oxidation. MxaD may participate in the periplasmic electron transport chain for oxidation of methanol. Mutants lacking MxaD exhibit a reduced growth on methanol, and a lower rate of respiration with methanol. Length = 140
>gnl|CDD|220822 pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport Back     alignment and domain information
>gnl|CDD|176858 cd07816, Bet_v1-like, Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 179
cd07816148 Bet_v1-like Ligand-binding bet_v_1 domain of major 99.93
PF00407151 Bet_v_1: Pathogenesis-related protein Bet v I fami 99.81
cd07821140 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), 99.75
PF10604139 Polyketide_cyc2: Polyketide cyclase / dehydrase an 99.74
cd08866144 SRPBCC_11 Ligand-binding SRPBCC domain of an uncha 99.67
cd08865140 SRPBCC_10 Ligand-binding SRPBCC domain of an uncha 99.57
cd07819140 SRPBCC_2 Ligand-binding SRPBCC domain of an unchar 99.57
cd08862138 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of 99.52
cd07822141 SRPBCC_4 Ligand-binding SRPBCC domain of an unchar 99.5
cd07818150 SRPBCC_1 Ligand-binding SRPBCC domain of an unchar 99.48
cd08861142 OtcD1_ARO-CYC_like N-terminal and C-terminal aroma 99.47
cd07812141 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SR 99.41
cd07813138 COQ10p_like Coenzyme Q-binding protein COQ10p and 99.4
cd07817139 SRPBCC_8 Ligand-binding SRPBCC domain of an unchar 99.36
cd07825144 SRPBCC_7 Ligand-binding SRPBCC domain of an unchar 99.33
cd07814139 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand- 99.33
cd07824146 SRPBCC_6 Ligand-binding SRPBCC domain of an unchar 99.24
cd05018144 CoxG Carbon monoxide dehydrogenase subunit G (CoxG 99.19
cd08860146 TcmN_ARO-CYC_like N-terminal aromatase/cyclase dom 99.15
cd07820137 SRPBCC_3 Ligand-binding SRPBCC domain of an unchar 99.11
PF03364130 Polyketide_cyc: Polyketide cyclase / dehydrase and 98.97
cd07823146 SRPBCC_5 Ligand-binding SRPBCC domain of an unchar 98.92
cd08898145 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligan 98.91
PRK10724158 hypothetical protein; Provisional 98.87
cd08893136 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobi 98.76
cd08899157 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligan 98.73
cd08894139 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligan 98.61
cd07826142 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligan 98.58
cd08876195 START_1 Uncharacterized subgroup of the steroidoge 98.56
COG3427146 Carbon monoxide dehydrogenase subunit G, CoxG [Ene 98.5
cd08895146 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligan 98.43
cd08897133 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligan 98.4
PF06240140 COXG: Carbon monoxide dehydrogenase subunit G (Cox 98.26
cd08896146 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligan 98.23
cd08900143 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligan 98.18
cd08892126 SRPBCC_Aha1 Putative hydrophobic ligand-binding SR 98.17
cd08891149 SRPBCC_CalC Ligand-binding SRPBCC domain of Microm 98.14
cd08901136 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligan 98.12
PF08327124 AHSA1: Activator of Hsp90 ATPase homolog 1-like pr 98.12
COG5637217 Predicted integral membrane protein [Function unkn 98.08
PTZ00220132 Activator of HSP-90 ATPase; Provisional 97.87
cd08874205 START_STARD9-like C-terminal START domain of mamma 97.82
COG3832149 Uncharacterized conserved protein [Function unknow 97.75
cd08905209 START_STARD1-like Cholesterol-binding START domain 97.63
cd08870209 START_STARD2_7-like Lipid-binding START domain of 97.62
cd08871222 START_STARD10-like Lipid-binding START domain of m 97.59
COG2867146 Oligoketide cyclase/lipid transport protein [Lipid 97.54
cd08873235 START_STARD14_15-like Lipid-binding START domain o 97.52
cd00177193 START Lipid-binding START domain of mammalian STAR 97.47
cd08868208 START_STARD1_3_like Cholesterol-binding START doma 97.43
cd08906209 START_STARD3-like Cholesterol-binding START domain 97.43
cd08914236 START_STARD15-like Lipid-binding START domain of m 97.28
cd08869197 START_RhoGAP C-terminal lipid-binding START domain 97.18
cd08911207 START_STARD7-like Lipid-binding START domain of ma 97.16
cd08867206 START_STARD4_5_6-like Lipid-binding START domain o 97.09
cd08913240 START_STARD14-like Lipid-binding START domain of m 97.01
cd08903208 START_STARD5-like Lipid-binding START domain of ma 96.9
cd08877215 START_2 Uncharacterized subgroup of the steroidoge 96.83
COG4276153 Uncharacterized conserved protein [Function unknow 96.77
smart00234206 START in StAR and phosphatidylcholine transfer pro 96.63
cd08908204 START_STARD12-like C-terminal lipid-binding START 96.62
cd08910207 START_STARD2-like Lipid-binding START domain of ma 96.52
PF10698159 DUF2505: Protein of unknown function (DUF2505); In 96.46
cd08904204 START_STARD6-like Lipid-binding START domain of ma 96.33
cd08902202 START_STARD4-like Lipid-binding START domain of ma 94.52
PF08982149 DUF1857: Domain of unknown function (DUF1857); Int 94.43
cd08863141 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand- 92.44
PF01852206 START: START domain; InterPro: IPR002913 START (St 91.8
cd08872235 START_STARD11-like Ceramide-binding START domain o 91.66
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins Back     alignment and domain information 
Probab=99.93  E-value=1e-24  Score=170.21  Aligned_cols=136  Identities=21%  Similarity=0.423  Sum_probs=110.5

Q ss_pred             EEEEEecCCChhhHhHHhhCCCC-c-cccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFN-I-HKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKE   89 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~-l-~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E   89 (179)
                      ..+++| +||+|+||++++||.+ + +.|+|.|.+|+.++|+ |++||+|.+++.     +|.          ...+++|
T Consensus         4 ~~e~~i-~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~-~~~GsvR~~~~~-----~~~----------~~~~~kE   66 (148)
T cd07816           4 EHEVEL-KVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGD-GGPGSIKLITFG-----PGG----------KVKYVKE   66 (148)
T ss_pred             EEEEEe-cCCHHHHHHHHhcChhhccccccccccEEEEEecC-CCCceEEEEEEc-----CCC----------cceEEEE
Confidence            467788 9999999999999995 4 7799999999998886 889999999983     221          1348999


Q ss_pred             EEEEEecCCcEEEEEEEeccc---ceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCC--CcHHHHHHHHHHH
Q 041543           90 RLVTVDHVQRCLIYEMVDGNI---GFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEG--LVLADLLQKYDLG  164 (179)
Q Consensus        90 ~L~~~D~~~r~~~Y~~~~~~~---~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g--~~~~~~~~~~~~g  164 (179)
                      ||+.+|+.+|+|+|+++++++   ++++|.++|+|.|.++         ++|.++|+++|++.++  ..++.+..++.  
T Consensus        67 ~l~~~D~~~~~~~y~vveg~~~~~~~~~y~~t~~v~~~~~---------~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~--  135 (148)
T cd07816          67 RIDAVDEENKTYKYTVIEGDVLKDGYKSYKVEIKFVPKGD---------GGCVVKWTIEYEKKGDAEPPEEEIKAGKE--  135 (148)
T ss_pred             EEEEEcccccEEEEEEEecccccCceEEEEEEEEEEECCC---------CCEEEEEEEEEEECCCCCCCHHHHHhHHH--
Confidence            999999999999999999887   5999999999999966         6899999999998866  34444444444  


Q ss_pred             HHHHHHHHHHHhh
Q 041543          165 LQRMAKTMEDAIV  177 (179)
Q Consensus       165 l~~m~~~le~~l~  177 (179)
                        .+.+.++.++.
T Consensus       136 --~~~~~~~~~~~  146 (148)
T cd07816         136 --KALKMFKAVEA  146 (148)
T ss_pred             --HHHHHHHHHHh
Confidence              44555555543

This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms Back     alignment and domain information
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins Back     alignment and domain information
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis Back     alignment and domain information
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu Back     alignment and domain information
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains Back     alignment and domain information
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily Back     alignment and domain information
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins Back     alignment and domain information
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins Back     alignment and domain information
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG) Back     alignment and domain information
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains Back     alignment and domain information
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp Back     alignment and domain information
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins Back     alignment and domain information
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>PRK10724 hypothetical protein; Provisional Back     alignment and domain information
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain Back     alignment and domain information
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion] Back     alignment and domain information
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster Back     alignment and domain information
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins Back     alignment and domain information
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins Back     alignment and domain information
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins Back     alignment and domain information
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT) Back     alignment and domain information
>COG5637 Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>PTZ00220 Activator of HSP-90 ATPase; Provisional Back     alignment and domain information
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding Back     alignment and domain information
>COG3832 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins Back     alignment and domain information
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins Back     alignment and domain information
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins Back     alignment and domain information
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism] Back     alignment and domain information
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins Back     alignment and domain information
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins Back     alignment and domain information
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins Back     alignment and domain information
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins Back     alignment and domain information
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins Back     alignment and domain information
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins Back     alignment and domain information
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins Back     alignment and domain information
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins Back     alignment and domain information
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins Back     alignment and domain information
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family Back     alignment and domain information
>COG4276 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00234 START in StAR and phosphatidylcholine transfer protein Back     alignment and domain information
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain Back     alignment and domain information
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins Back     alignment and domain information
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria Back     alignment and domain information
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins Back     alignment and domain information
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins Back     alignment and domain information
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function Back     alignment and domain information
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily Back     alignment and domain information
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins [] Back     alignment and domain information
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query179
3kl1_A190 PYL2, putative uncharacterized protein AT2G26040; 3e-31
3rt2_A183 Abscisic acid receptor PYL10; ABA-independent PP2C 5e-29
3qrz_A223 Abscisic acid receptor PYL5; crystal, hormone rece 4e-25
3oqu_A205 Abscisic acid receptor PYL9; RCAR1, hormone recept 2e-24
3k3k_A211 Abscisic acid receptor PYR1; ABA receptor, plant h 8e-22
2le1_A151 Uncharacterized protein; structural genomics, nort 1e-21
3jrs_A208 PYL1, putative uncharacterized protein AT5G46790; 7e-19
3f08_A146 Uncharacterized protein Q6HG14; NESG Q6HG14_bachk 1e-17
2flh_A155 Cytokinin-specific binding protein; zeatin, pathog 1e-17
3p51_A160 Uncharacterized protein; structural genomics, PSI- 1e-17
2vq5_A201 S-norcoclaurine synthase; lyase, S- norcoclaurine 4e-13
2i9y_A166 Major latex protein-like protein 28 or MLP-like pr 3e-11
1vjh_A122 BET V I allergen family; structural genomics, cent 9e-08
3oji_A189 Abscisic acid receptor PYL3; crystal, PP2C, pyraba 5e-07
4a8u_A159 Major pollen allergen BET V 1-J; PR-10 protein; 1. 4e-06
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 4e-06
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 2e-05
2vjg_A154 Major allergen DAU C 1; major carrot allergen, pat 6e-05
3ie5_A165 Phenolic oxidative coupling protein HYP-1; hyperic 1e-04
3rws_A168 MTN13 protein; zeatin, cytokinin, hormone, lucerne 4e-04
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Length = 190 Back     alignment and structure
 Score =  111 bits (277), Expect = 3e-31
 Identities = 39/179 (21%), Positives = 64/179 (35%), Gaps = 27/179 (15%)

Query: 7   QKWEGKVSTRVSR---ATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAG 63
           +      ++ +++   A A  +WPL   F N  +Y H +     + G +G+   +R    
Sbjct: 29  EPDPTTCTSLITQRIHAPASVVWPLIRRFDNPERYKHFVKRCRLISG-DGDVGSVREV-- 85

Query: 64  FSIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIP 123
                    +     P     S S ERL  VD   R L + +V G    K+Y S   +  
Sbjct: 86  ---------TVISGLPA----STSTERLEFVDDDHRVLSFRVVGGEHRLKNYKSVTSVNE 132

Query: 124 GDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLADLLQK----YDLGLQRMAKTMEDAIVQ 178
             + +          V+  S+TVD  EG    D          L LQ++      A + 
Sbjct: 133 FLNQDSGK----VYTVVLESYTVDIPEGNTEEDTKMFVDTVVKLNLQKLGVAATSAPMH 187
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Length = 183 Back     alignment and structure
>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Length = 205 Back     alignment and structure
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Length = 211 Back     alignment and structure
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Length = 151 Back     alignment and structure
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Length = 208 Back     alignment and structure
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} PDB: 3cnw_A Length = 146 Back     alignment and structure
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Length = 155 Back     alignment and structure
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Length = 160 Back     alignment and structure
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Length = 201 Back     alignment and structure
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 166 Back     alignment and structure
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Length = 122 Back     alignment and structure
>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 3klx_A Length = 189 Back     alignment and structure
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Length = 159 Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Length = 159 Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Length = 155 Back     alignment and structure
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} Length = 165 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
3rt2_A183 Abscisic acid receptor PYL10; ABA-independent PP2C 99.97
3jrs_A208 PYL1, putative uncharacterized protein AT5G46790; 99.97
3oqu_A205 Abscisic acid receptor PYL9; RCAR1, hormone recept 99.96
3k3k_A211 Abscisic acid receptor PYR1; ABA receptor, plant h 99.96
3kl1_A190 PYL2, putative uncharacterized protein AT2G26040; 99.96
3f08_A146 Uncharacterized protein Q6HG14; NESG Q6HG14_bachk 99.96
3oji_A189 Abscisic acid receptor PYL3; crystal, PP2C, pyraba 99.96
3p51_A160 Uncharacterized protein; structural genomics, PSI- 99.95
2flh_A155 Cytokinin-specific binding protein; zeatin, pathog 99.95
2i9y_A166 Major latex protein-like protein 28 or MLP-like pr 99.94
1e09_A159 PRU AV 1; allergen, major cherry allergen, pathoge 99.94
2vjg_A154 Major allergen DAU C 1; major carrot allergen, pat 99.94
1tw0_A157 Pathogenesis-related class 10 protein SPE-16; seve 99.94
4a8u_A159 Major pollen allergen BET V 1-J; PR-10 protein; 1. 99.94
3qrz_A223 Abscisic acid receptor PYL5; crystal, hormone rece 99.94
3rws_A168 MTN13 protein; zeatin, cytokinin, hormone, lucerne 99.94
2qim_A158 PR10.2B; trans-zeatin, cytokinin, plant hormones, 99.94
1icx_A155 Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, 99.94
2le1_A151 Uncharacterized protein; structural genomics, nort 99.93
3ie5_A165 Phenolic oxidative coupling protein HYP-1; hyperic 99.93
2vq5_A201 S-norcoclaurine synthase; lyase, S- norcoclaurine 99.93
2wql_A154 Major allergen DAU C 1; pathogenesis-related prote 99.9
3ijt_A155 SMU.440, putative uncharacterized protein; hypothe 99.69
3tvq_A169 Multifunctional cyclase-dehydratase-3-O-methyl TR 99.65
1vjh_A122 BET V I allergen family; structural genomics, cent 99.62
3tl1_A159 WHIE ORF VI, polyketide cyclase; helix-GRIP fold, 99.62
3tfz_A172 Cyclase; helix-GRIP, BET V1-like superfamily, bios 99.61
2d4r_A147 Hypothetical protein TTHA0849; start domain, struc 99.61
3ggn_A155 Uncharacterized protein DR_A0006; structural genom 99.4
1t17_A148 Conserved hypothetical protein; beta-alpha-beta-BE 99.38
2ns9_A157 Hypothetical protein APE2225; uncharacterized cons 99.32
2pcs_A162 Conserved protein; structural genomics, unknown fu 99.29
3p9v_A161 Uncharacterized protein; structural genomics, PSI- 99.07
2leq_A146 Uncharacterized protein; start domains, structural 99.07
1z94_A147 Conserved hypothetical protein; NESG, CV1439, stru 99.01
2lak_A160 AHSA1-like protein RHE_CH02687; NESG, structural g 98.99
2il5_A171 Hypothetical protein; structural genomics, APC2365 98.99
1xn6_A143 Hypothetical protein BC4709; structural genomics, 98.98
2lcg_A142 Uncharacterized protein; start domain, structural 98.97
1xuv_A178 Hypothetical protein MM0500; alpha-beta protein, n 98.94
2l8o_A144 Uncharacterized protein; mixed alpha-beta protein, 98.89
3q64_A162 MLL3774 protein; structural genomics, PSI-biology, 98.88
3rd6_A161 MLL3558 protein; structural genomics, PSI-biology, 98.86
3q6a_A135 Uncharacterized protein; structural genomics, PSI- 98.83
2lgh_A144 Uncharacterized protein; AHSA1, start domain, COG3 98.8
2nn5_A184 Hypothetical protein EF_2215; structural genomics, 98.79
2ldk_A172 Uncharacterized protein; structural genomics, nort 98.78
3pu2_A164 Uncharacterized protein; SRPBCC superfamily, PSI-b 98.77
3q63_A151 MLL2253 protein; structural genomics, PSI-biology, 98.76
1xfs_A178 NC_840354, conserved hypothetical protein; structu 98.74
3put_A166 Hypothetical conserved protein; structural genomic 98.74
1xn5_A146 BH1534 unknown conserved protein; structural genom 98.73
3eli_A152 AHSA1, AHA1 domain protein; alpha-beta protein, st 98.71
2l9p_A164 Uncharacterized protein; structural genomics, nort 98.69
3uid_A168 Putative uncharacterized protein; SRPBCC superfami 98.66
2qpv_A156 Uncharacterized protein ATU1531; structural genomi 98.66
2lf2_A175 Uncharacterized protein; NESG, structural genomics 98.62
2kew_A152 Uncharacterized protein YNDB; start domain, resona 98.6
3qsz_A189 STAR-related lipid transfer protein; structural ge 98.59
2k5g_A191 Uncharacterized protein; structural genomiccs, pro 98.43
1x53_A145 Activator of 90 kDa heat shock protein ATPase homo 98.33
3ni8_A158 PFC0360W protein; heat shock, malaria, ATPase, str 98.32
4fpw_A181 CALU16; structural genomics, PSI-biology, northeas 98.23
1zxf_A155 CALC; SELF-sacrificing resistance protein, structu 98.23
2luz_A192 CALU16; structural genomics, northeast structural 98.12
3oh8_A 516 Nucleoside-diphosphate sugar epimerase (SULA FAMI; 98.06
1ln1_A214 PC-TP, phosphatidylcholine transfer protein; start 97.88
1jss_A224 Stard4, cholesterol-regulated start protein 4; sta 97.8
1em2_A229 MLN64 protein; beta barrel, lipid binding protein; 97.52
3p0l_A221 Steroidogenic acute regulatory protein, mitochond; 97.48
2r55_A231 STAR-related lipid transfer protein 5; alpha and b 97.34
2e3n_A255 Lipid-transfer protein CERT; ceramide transfer, li 96.66
2pso_A237 STAR-related lipid transfer protein 13; alpha and 96.57
2lio_A136 Uncharacterized protein; structural genomics, nort 95.83
3fo5_A258 Thioesterase, adipose associated, isoform BFIT2; o 95.82
2ffs_A157 Hypothetical protein PA1206; 7-stranded beta sheet 90.97
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C Back     alignment and structure
Probab=99.97  E-value=6.1e-31  Score=212.18  Aligned_cols=146  Identities=22%  Similarity=0.267  Sum_probs=126.1

Q ss_pred             ceeEEEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCcee
Q 041543            8 KWEGKVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWS   87 (179)
Q Consensus         8 ~w~g~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~   87 (179)
                      |=.-.++.+| +||+++||++++||+++++|+|.|.+| .++|+++++|++|.+++.     +|.          ...++
T Consensus        26 ~~~~~v~~~I-~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~-----~G~----------p~~~v   88 (183)
T 3rt2_A           26 QCSSTLVKHI-KAPLHLVWSIVRRFDEPQKYKPFISRC-VVQGKKLEVGSVREVDLK-----SGL----------PATKS   88 (183)
T ss_dssp             EEEEEEEEEE-SSCHHHHHHHHTCTTCGGGTCTTEEEE-EESSSCCCTTCEEEEEEC-----CSS----------TTCEE
T ss_pred             ceEEEEEEEE-eCCHHHHHHHHhCcCchhhcCccceEE-EeeCCCCCCCcEEEEEeC-----CCC----------ccceE
Confidence            4455677889 999999999999999999999999999 568877889999999983     452          12389


Q ss_pred             EEEEEEEecCCcEEEEEEEecccceeeEEEEEEEEeCC-CCCCCCCCCCC-ceEEEEEEEEcCCCCCcHHHHH----HHH
Q 041543           88 KERLVTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGD-DNNHDGQNQSA-GCVIEWSFTVDPVEGLVLADLL----QKY  161 (179)
Q Consensus        88 ~E~L~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~-~~~~~~~~~~~-~t~v~W~~~~~p~~g~~~~~~~----~~~  161 (179)
                      +|||+++|+++|+|+|+|+++++++++|.++|+|.|.+ ++        + +|+|+|+++|++++|...+++.    .+|
T Consensus        89 kErL~~~D~~~~~~sY~Iieg~lp~~~y~ati~v~p~~~dG--------~~gt~V~Ws~~fd~~~g~~~e~~~~~~~~i~  160 (183)
T 3rt2_A           89 TEVLEILDDNEHILGIRIVGGDHRLKNYSSTISLHSETIDG--------KTGTLAIESFVVDVPEGNTKEETCFFVEALI  160 (183)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESCSCTTCEEEEEEEEEEETT--------EEEEEEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCCEEEEEEecCCcceeEEEEEEEEEEecCCC--------CCCEEEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999986 42        2 7999999999988887766543    679


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 041543          162 DLGLQRMAKTMEDAIVQ  178 (179)
Q Consensus       162 ~~gl~~m~~~le~~l~~  178 (179)
                      +.||++|++.+|+...+
T Consensus       161 ~~~L~~L~~~~e~~~~~  177 (183)
T 3rt2_A          161 QCNLNSLADVTERLQAE  177 (183)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999987654
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana} Back     alignment and structure
>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana} Back     alignment and structure
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A* Back     alignment and structure
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A* Back     alignment and structure
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A Back     alignment and structure
>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A* Back     alignment and structure
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis} Back     alignment and structure
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A* Back     alignment and structure
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Back     alignment and structure
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A Back     alignment and structure
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A* Back     alignment and structure
>4a8u_A Major pollen allergen BET V 1-J; PR-10 protein; 1.16A {Betula pendula} PDB: 4a8v_A* 4a87_A* 4a81_A* 4a80_A* 4a83_A* 4a86_A* 4a85_A* 4a88_A 4a8g_A* 1b6f_A 1btv_A 1bv1_A 1fsk_A 4a84_A* 1llt_A 1fm4_A* 3k78_A 1qmr_A Back     alignment and structure
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A Back     alignment and structure
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A Back     alignment and structure
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca} Back     alignment and structure
>3ie5_A Phenolic oxidative coupling protein HYP-1; hypericin, ST JOHN'S WORT, depression, allergy, PR-10 protein, cytokinin, plant hormones; HET: PGE PG4 PE8 1PE; 1.69A {Hypericum perforatum} SCOP: d.129.3.0 Back     alignment and structure
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A* Back     alignment and structure
>2wql_A Major allergen DAU C 1; pathogenesis-related protein, plant defense; HET: P4C; 2.70A {Daucus carota} PDB: 2bk0_A Back     alignment and structure
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A Back     alignment and structure
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A Back     alignment and structure
>1vjh_A BET V I allergen family; structural genomics, center for eukaryotic structural genomics, protein structure initiative, CESG, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.129.3.1 PDB: 2q3q_A Back     alignment and structure
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A Back     alignment and structure
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP} Back     alignment and structure
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6 Back     alignment and structure
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A Back     alignment and structure
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6 Back     alignment and structure
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10 Back     alignment and structure
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10 Back     alignment and structure
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei} Back     alignment and structure
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5 Back     alignment and structure
>2lak_A AHSA1-like protein RHE_CH02687; NESG, structural genomics, northeast structural genomics CON PSI-biology, structure genomics, unknown function; NMR {Rhizobium etli} Back     alignment and structure
>2il5_A Hypothetical protein; structural genomics, APC23650, PSI-2, structure initiative; 2.30A {Staphylococcus aureus subsp} SCOP: d.129.3.5 Back     alignment and structure
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5 Back     alignment and structure
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans} Back     alignment and structure
>1xuv_A Hypothetical protein MM0500; alpha-beta protein, northeast structural genomics consortium, NESG, structural genomics; 2.10A {Methanosarcina mazei GO1} SCOP: d.129.3.5 Back     alignment and structure
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>3q64_A MLL3774 protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.50A {Mesorhizobium loti} Back     alignment and structure
>3rd6_A MLL3558 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.80A {Mesorhizobium loti} Back     alignment and structure
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp} Back     alignment and structure
>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5 Back     alignment and structure
>2ldk_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Arthrobacter aurescens} Back     alignment and structure
>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides} Back     alignment and structure
>3q63_A MLL2253 protein; structural genomics, PSI-biology, protein structure initiati alpha-beta protein, unknown, structure genomics; 2.00A {Mesorhizobium loti} Back     alignment and structure
>1xfs_A NC_840354, conserved hypothetical protein; structural genomics, protein structure initiative, NESG, ALP protein, PSI; 1.70A {Nitrosomonas europaea} SCOP: d.129.3.5 Back     alignment and structure
>3put_A Hypothetical conserved protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.83A {Rhizobium etli cfn 42} PDB: 3otl_A* Back     alignment and structure
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5 Back     alignment and structure
>3eli_A AHSA1, AHA1 domain protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} SCOP: d.129.3.5 Back     alignment and structure
>2l9p_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Staphylococcus epidermidis} Back     alignment and structure
>3uid_A Putative uncharacterized protein; SRPBCC superfamily, beta sandwich, function, structural genomics, TB structural genomics conso TBSGC; 1.57A {Mycobacterium smegmatis} SCOP: d.129.3.0 Back     alignment and structure
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8 Back     alignment and structure
>2lf2_A Uncharacterized protein; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; NMR {Cytophaga hutchinsonii} Back     alignment and structure
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A Back     alignment and structure
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV} Back     alignment and structure
>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5 Back     alignment and structure
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5 Back     alignment and structure
>3ni8_A PFC0360W protein; heat shock, malaria, ATPase, structural genomics consortium, unknown function; 2.50A {Plasmodium falciparum} Back     alignment and structure
>4fpw_A CALU16; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 2.50A {Micromonospora echinospora} PDB: 2luz_A Back     alignment and structure
>1zxf_A CALC; SELF-sacrificing resistance protein, structural genomics, PSI, protein structure initiative; NMR {Micromonospora echinospora} SCOP: d.129.3.5 PDB: 2gkc_A* 2gkd_A 2l65_A* Back     alignment and structure
>2luz_A CALU16; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Micromonospora echinospora} Back     alignment and structure
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Back     alignment and structure
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A* Back     alignment and structure
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2 Back     alignment and structure
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens} Back     alignment and structure
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens} Back     alignment and structure
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A* Back     alignment and structure
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2 Back     alignment and structure
>2lio_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Bacteroides fragilis} Back     alignment and structure
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens} Back     alignment and structure
>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 179
d1e09a_159 d.129.3.1 (A:) Major tree pollen allergen {Sweet c 2e-15
d1txca1147 d.129.3.1 (A:1-147) Plant pathogenesis-related pro 3e-15
d1fm4a_159 d.129.3.1 (A:) Major tree pollen allergen {Europea 8e-14
d3cnwa1138 d.129.3.8 (A:3-140) Uncharacterized protein XoxI { 2e-13
d1icxa_155 d.129.3.1 (A:) Plant pathogenesis-related protein 2e-10
d1vjha_120 d.129.3.1 (A:) Hypothetical protein At1G24000 {Tha 3e-10
d1xdfa1157 d.129.3.1 (A:1-157) Plant pathogenesis-related pro 8e-09
d2bk0a1153 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery 7e-06
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Length = 159 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Pathogenesis-related protein 10 (PR10)-like
domain: Major tree pollen allergen
species: Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]

 Score = 67.6 bits (165), Expect = 2e-15
 Identities = 18/173 (10%), Positives = 53/173 (30%), Gaps = 33/173 (19%)

Query: 7   QKWEGKVSTRVSRATADQIW-PLFTDFFN-IHKYFHSLATSYGVHGTNGEPDCIRYCAGF 64
             +E + ++ +      +++     D  N + K          +   +G P  I+    F
Sbjct: 3   FTYESEFTSEIP---PPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKIT-F 58

Query: 65  SIPSRAASSSTDDNPPPAACSWSKERLVTVDHVQRCLIYEMVDGNI---GFKSYVSTIKI 121
              S+                + K ++ ++D       Y +++G+      +      K+
Sbjct: 59  GEGSQY--------------GYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKL 104

Query: 122 IPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVL-ADLLQKYDLGLQRMAKTME 173
           +              G +I+ +        + +  + ++        + K +E
Sbjct: 105 VASPSG---------GSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIE 148
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Length = 147 Back     information, alignment and structure
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Length = 159 Back     information, alignment and structure
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Length = 138 Back     information, alignment and structure
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 155 Back     information, alignment and structure
>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 120 Back     information, alignment and structure
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Length = 157 Back     information, alignment and structure
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Length = 153 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query179
d3cnwa1138 Uncharacterized protein XoxI {Bacillus cereus [Tax 99.95
d1e09a_159 Major tree pollen allergen {Sweet cherry (Prunus a 99.89
d1fm4a_159 Major tree pollen allergen {European white birch ( 99.88
d1icxa_155 Plant pathogenesis-related protein PR10 {Yellow lu 99.87
d1txca1147 Plant pathogenesis-related protein PR10 {Jicama (P 99.87
d2bk0a1153 Major allergen api g 1 {Celery (Apium graveolens) 99.87
d1xdfa1157 Plant pathogenesis-related protein PR10 {Yellow lu 99.86
d2b79a1137 Hypothetical protein SMU440 {Streptococcus mutans 99.65
d2d4ra1146 Hypothetical protein TTHA0849 {Thermus thermophilu 99.64
d2rera1155 Multifunctional enzyme TcmN, cyclase/aromatase dom 99.57
d1vjha_120 Hypothetical protein At1G24000 {Thale cress (Arabi 99.54
d2ns9a1147 Hypothetical protein APE2225 {Aeropyrum pernix [Ta 99.5
d2qpva1133 Uncharacterized protein Atu1531 {Agrobacterium tum 99.19
d2pcsa1147 Hypothetical protein GKP20 {Geobacillus kaustophil 99.15
d1xuva_163 Hypothetical protein MM0500 {Methanosarcina mazei 98.96
d1t17a_148 Hypothetical protein CC1736 {Caulobacter crescentu 98.94
d2il5a1164 Hypothetical protein SA2116 {Staphylococcus aureus 98.83
d1xfsa_165 Hypothetical protein NE0264 {Nitrosomonas europaea 98.61
d1z94a1143 Hypothetical protein CV1439 {Chromobacterium viola 98.61
d2nn5a1160 Hypothetical protein EF2215 {Enterococcus faecalis 98.52
d3elia1143 Uncharacterized protein SPO3351 {Silicibacter pome 98.35
d1xn6a_143 Hypothetical protein BC4709 {Bacillus cereus [TaxI 98.35
d1xn5a_138 Hypothetical protein BH1534 {Bacillus halodurans [ 98.29
d1zxfa1155 Calicheamicin gene cluster protein CalC {Micromono 98.12
d2k5ga1183 Uncharacterized protein BPP1335 {Bordetella parape 97.85
d1jssa_199 Cholesterol-regulated Start protein 4 (Stard4). {M 97.85
d1em2a_214 Lipid transport domain of Mln64 {Human (Homo sapie 97.78
d1x53a1132 Activator of 90 kda heat shock protein ATPase homo 97.69
d1ln1a_203 Phosphatidylcholine transfer protein {Human (Homo 97.45
d2psoa1197 Star-related lipid transfer protein 13 {Human (Hom 96.21
d2ffsa1151 Hypothetical protein PA1206 {Pseudomonas aeruginos 94.02
>d3cnwa1 d.129.3.8 (A:3-140) Uncharacterized protein XoxI {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: Bet v1-like
family: Atu1531-like
domain: Uncharacterized protein XoxI
species: Bacillus cereus [TaxId: 1396]

Probab=99.95  E-value=1.4e-26  Score=174.04  Aligned_cols=129  Identities=22%  Similarity=0.392  Sum_probs=109.1

Q ss_pred             EEEEEecCCChhhHhHHhhCCCCccccccceeEEEeecCCCCCCcEEEEeecccccCCCCCCCCCCCCCCCCCceeEEEE
Q 041543           12 KVSTRVSRATADQIWPLFTDFFNIHKYFHSLATSYGVHGTNGEPDCIRYCAGFSIPSRAASSSTDDNPPPAACSWSKERL   91 (179)
Q Consensus        12 ~vs~~i~~apae~VW~~l~df~~l~~w~p~i~~~~~~~G~~g~~G~vR~~~~~~~p~~~g~~~~~~~~~~~~~~~~~E~L   91 (179)
                      .+|++| +||||+||++|+||+++++|+|.+.+|+...+     |++|.+.+.     +|.             .+.|+|
T Consensus         5 ~~si~I-~A~pe~VW~~v~df~~~~~W~p~v~~~~~~~~-----G~~R~~~~~-----~g~-------------~~~E~l   60 (138)
T d3cnwa1           5 TTSMEI-FGSPEQVWQLIGGFNSLPDWLPYIPSSKLTEG-----GRVRHLANP-----DGD-------------TIIERL   60 (138)
T ss_dssp             EEEEEE-SSCHHHHHHHHCCTTCGGGTCTTCSEEEEEGG-----GTEEEEECT-----TCC-------------EEEEEE
T ss_pred             EEEEEE-eCCHHHHHHHHhCccchHHHhcccceeEeecC-----ceeEEEEec-----CCc-------------eeEEEE
Confidence            679999 99999999999999999999999999987432     789999872     565             899999


Q ss_pred             EEEecCCcEEEEEEEecccceeeEEEEEEEEeCCCCCCCCCCCCCceEEEEEEEEcCCCCCcHHH----HHHHHHHHHHH
Q 041543           92 VTVDHVQRCLIYEMVDGNIGFKSYVSTIKIIPGDDNNHDGQNQSAGCVIEWSFTVDPVEGLVLAD----LLQKYDLGLQR  167 (179)
Q Consensus        92 ~~~D~~~r~~~Y~~~~~~~~~~~y~at~~v~p~~~~~~~~~~~~~~t~v~W~~~~~p~~g~~~~~----~~~~~~~gl~~  167 (179)
                      +.+|+.+|+++|+++++++++.+|.++++|.|.+++        ++|+|+|+++|+|. +...+.    +..+|+.+|++
T Consensus        61 ~~~d~~~~~~~y~~~~~~~p~~~~~~~~~l~p~~~g--------~~t~v~w~~~f~p~-~~~~~~~~~~~~~~~~~~l~~  131 (138)
T d3cnwa1          61 EVFNDKERYYTYSIMNAPFPVTNYLSTIQVKEGTES--------NTSLVEWSGTFTPV-EVSDEEAINLFHGIYSDGLKA  131 (138)
T ss_dssp             EEEETTTTEEEEEEEECSSSEEEEEEEEEEEECSST--------TCEEEEEEEEEEES-SSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCcEEEEEEecCCCcceeeEEEEEEEECCCC--------CeEEEEEEEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998763        57999999999985 344443    33566777777


Q ss_pred             HHHHHH
Q 041543          168 MAKTME  173 (179)
Q Consensus       168 m~~~le  173 (179)
                      |++++.
T Consensus       132 L~~~f~  137 (138)
T d3cnwa1         132 LQQAFL  137 (138)
T ss_dssp             HHHHHH
T ss_pred             HHHhhc
Confidence            776653
>d1e09a_ d.129.3.1 (A:) Major tree pollen allergen {Sweet cherry (Prunus avium), pru av 1 [TaxId: 42229]} Back     information, alignment and structure
>d1fm4a_ d.129.3.1 (A:) Major tree pollen allergen {European white birch (Betula pendula), Bet v 1-l [TaxId: 3505]} Back     information, alignment and structure
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d1txca1 d.129.3.1 (A:1-147) Plant pathogenesis-related protein PR10 {Jicama (Pachyrhizus erosus), SPE-16 [TaxId: 109171]} Back     information, alignment and structure
>d2bk0a1 d.129.3.1 (A:2-154) Major allergen api g 1 {Celery (Apium graveolens) [TaxId: 4045]} Back     information, alignment and structure
>d1xdfa1 d.129.3.1 (A:1-157) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]} Back     information, alignment and structure
>d2b79a1 d.129.3.9 (A:1-137) Hypothetical protein SMU440 {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d2d4ra1 d.129.3.6 (A:2-147) Hypothetical protein TTHA0849 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2rera1 d.129.3.6 (A:1-155) Multifunctional enzyme TcmN, cyclase/aromatase domain {Streptomyces glaucescens [TaxId: 1907]} Back     information, alignment and structure
>d1vjha_ d.129.3.1 (A:) Hypothetical protein At1G24000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2qpva1 d.129.3.8 (A:1-133) Uncharacterized protein Atu1531 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]} Back     information, alignment and structure
>d1xuva_ d.129.3.5 (A:) Hypothetical protein MM0500 {Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1t17a_ d.129.3.6 (A:) Hypothetical protein CC1736 {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1xfsa_ d.129.3.5 (A:) Hypothetical protein NE0264 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1z94a1 d.129.3.5 (A:2-144) Hypothetical protein CV1439 {Chromobacterium violaceum [TaxId: 536]} Back     information, alignment and structure
>d2nn5a1 d.129.3.5 (A:1-160) Hypothetical protein EF2215 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d3elia1 d.129.3.5 (A:2-144) Uncharacterized protein SPO3351 {Silicibacter pomeroyi [TaxId: 89184]} Back     information, alignment and structure
>d1xn6a_ d.129.3.5 (A:) Hypothetical protein BC4709 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1zxfa1 d.129.3.5 (A:1-155) Calicheamicin gene cluster protein CalC {Micromonospora echinospora [TaxId: 1877]} Back     information, alignment and structure
>d2k5ga1 d.129.3.5 (A:1-183) Uncharacterized protein BPP1335 {Bordetella parapertussis [TaxId: 519]} Back     information, alignment and structure
>d1jssa_ d.129.3.2 (A:) Cholesterol-regulated Start protein 4 (Stard4). {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x53a1 d.129.3.5 (A:8-139) Activator of 90 kda heat shock protein ATPase homolog 1, AHSA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ln1a_ d.129.3.2 (A:) Phosphatidylcholine transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2psoa1 d.129.3.2 (A:908-1104) Star-related lipid transfer protein 13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ffsa1 d.129.3.7 (A:1-151) Hypothetical protein PA1206 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure