Citrus Sinensis ID: 041553

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
MNWSSRERKRRRMQYTYTAWVPTTYPPLPKIVTVKSKPSSAKTQTPIRYSAHEYINYNDNININDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL
ccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHcccHHHHHHcccEEEEcHHHHHHHHHccccEEEEEEEccccccccccccccccccccccEEEEcHHHHHHHcccccccEEEEEEEEcccccccccccccHHccccccccccccEEEEEcccccccHHHHHHHHHHHcccEEEEcccccccccHHHHHHHccccccccEEEccHHHHHHHHHHcccEEEEEEcccccccHHHHcccHHHHHHHHcccccc
cccccHHHHHHHHHHHHHcccccccccccccEEcccccccccccccccEEEEEEEcccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHccccccEEEEHHHHHHHHHHccccEEEEEEEHHHHcccHHHHcHHHHHHccccEEEEcHHHHHHHHccccccEEEEEEEcccccEEEEcccccccccHccccccccEEEEEEccccccccHHHHEHHHHccccEEEEEccccccccHHHHHHHcccEEEEEEEcccHHHHHHHHHHccccEEEEccccccccccccccccEEccccccccccc
mnwssrerkRRRMQYTYtawvpttypplpkivtvkskpssaktqtpirysaheyinyndnininddaddgrkfalpyhvknitstsnpfVKHCLKlrqsssyrhshgsalvvgttpirEIYNFNRSLQERTVRMDCLLLLdkvevpegldnisTHTVRVSSVVMKKLSGVQSSESIEAIALMkiptsvfsidvnqkeadcrswfpsiHRILVLdgiqdpgnlGTLLRTAMAFKWGgvfllpgccdpfseKALRASrgacfqlpivsgswyhlEVLKDEFQMKLLaghaggneepRQVLQLSQELADsfagvplcl
mnwssrerkrrrmqytytawvpttypplpKIVTvkskpssaktqtPIRYSAHEYINYNDNININDDADDGRKFALPYHVKnitstsnpfvKHCLKLRqsssyrhshgsalvvgttpiREIYNFNRSLQERTVRMDCLLLLDKVevpegldnisthtvrvSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL
MNWSSRERKRRRMQYTYTAWVPTTYPPLPKIVTVKSKPSSAKTQTPIRYSAHEyinyndnininddaddGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL
*************QYTYTAWVPTTYPPLPKIVTV************IRYSAHEYINYNDNININDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGH****************************
*************QYTYTAWVP******************************************************YHVKNITSTSNPFVKHCLKLRQ**S*RHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL
***********RMQYTYTAWVPTTYPPLPKIVTV**********TPIRYSAHEYINYNDNININDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL
**************YTYTAWVPTTYPPLPKIVTVKSKPSSAKTQTPIRYSAHEYINYN****************LPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFA******
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNWSSRERKRRRMQYTYTAWVPTTYPPLPKIVTVKSKPSSAKTQTPIRYSAHEYINYNDNININDDADDGRKFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVPLCL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
P74261274 Uncharacterized tRNA/rRNA N/A no 0.523 0.602 0.308 1e-11
P94538248 Uncharacterized tRNA/rRNA yes no 0.196 0.25 0.419 2e-09
Q5ND52 418 RNA methyltransferase-lik yes no 0.180 0.136 0.491 1e-08
A4QNL8 415 RNA methyltransferase-lik yes no 0.177 0.134 0.5 2e-08
A1L2E4 445 RNA methyltransferase-lik yes no 0.174 0.123 0.490 3e-08
Q9HC36 420 RNA methyltransferase-lik yes no 0.193 0.145 0.442 3e-08
Q6GPJ4 419 RNA methyltransferase-lik N/A no 0.177 0.133 0.5 3e-08
Q9VW14407 RNA methyltransferase-lik yes no 0.171 0.132 0.444 5e-07
Q566V3435 RNA methyltransferase-lik no no 0.187 0.135 0.440 1e-06
P18644269 rRNA (adenosine-2'-O-)-me N/A no 0.257 0.301 0.345 4e-06
>sp|P74261|Y1673_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr1673 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1673 PE=3 SV=1 Back     alignment and function desciption
 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 23/188 (12%)

Query: 73  FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV 132
           + L   + +ITST NP VK   +L Q+   R   G  L+ GT  +          Q +  
Sbjct: 2   YPLTSDIASITSTQNPLVKQLRQLHQTKG-RKQQGQLLLEGTHLLEVALA-----QGKGF 55

Query: 133 RMDCLLLLDKVEVPEGLDNI---STHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVF 189
              C   + + + P   D +   S H+  VS  V+ K++   + + + A   M       
Sbjct: 56  NHGCFTAMWQEKNPVLADRLMAQSVHSYLVSGEVLAKMASTVNPDGVVATLTM------- 108

Query: 190 SIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSE 249
                  +   RS  P     LVL+ +QDPGNLGT+LRTA A    G++L   C DP S 
Sbjct: 109 -------DQFWRSPPPHARLGLVLERLQDPGNLGTILRTAAATGVEGIWLTADCVDPTSP 161

Query: 250 KALRASRG 257
           K LR+S G
Sbjct: 162 KVLRSSAG 169

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|P94538|YSGA_BACSU Uncharacterized tRNA/rRNA methyltransferase YsgA OS=Bacillus subtilis (strain 168) GN=ysgA PE=3 SV=2 Back     alignment and function description
>sp|Q5ND52|RMTL1_MOUSE RNA methyltransferase-like protein 1 OS=Mus musculus GN=Rnmtl1 PE=2 SV=1 Back     alignment and function description
>sp|A4QNL8|RMTL1_XENTR RNA methyltransferase-like protein 1 OS=Xenopus tropicalis GN=rnmtl1 PE=2 SV=1 Back     alignment and function description
>sp|A1L2E4|RML1B_DANRE RNA methyltransferase-like protein 1B OS=Danio rerio GN=rnmtl1b PE=2 SV=2 Back     alignment and function description
>sp|Q9HC36|RMTL1_HUMAN RNA methyltransferase-like protein 1 OS=Homo sapiens GN=RNMTL1 PE=1 SV=2 Back     alignment and function description
>sp|Q6GPJ4|RMTL1_XENLA RNA methyltransferase-like protein 1 OS=Xenopus laevis GN=rnmtl1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VW14|RMTL1_DROME RNA methyltransferase-like protein 1 homolog OS=Drosophila melanogaster GN=CG14100 PE=2 SV=1 Back     alignment and function description
>sp|Q566V3|RML1A_DANRE RNA methyltransferase-like protein 1A OS=Danio rerio GN=rnmtl1a PE=2 SV=1 Back     alignment and function description
>sp|P18644|TSNR_STRAJ rRNA (adenosine-2'-O-)-methyltransferase OS=Streptomyces azureus GN=tsnR PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
255583237342 RNA binding protein, putative [Ricinus c 0.920 0.847 0.623 1e-105
359495860 459 PREDICTED: uncharacterized tRNA/rRNA met 0.765 0.525 0.751 1e-102
296090517 1306 unnamed protein product [Vitis vinifera] 0.765 0.184 0.751 1e-102
30691669352 tRNA/rRNA methyltransferase (SpoU) famil 0.898 0.803 0.581 8e-89
449478075328 PREDICTED: uncharacterized tRNA/rRNA met 0.812 0.780 0.669 1e-88
297802134355 tRNA/rRNA methyltransferase family prote 0.920 0.816 0.580 2e-88
357517191 638 RNA methyltransferase-like protein [Medi 0.771 0.380 0.652 4e-88
359807242324 uncharacterized protein LOC100792782 [Gl 0.742 0.722 0.677 7e-84
224084459359 predicted protein [Populus trichocarpa] 0.774 0.679 0.675 6e-82
4467108400 hypothetical protein [Arabidopsis thalia 0.898 0.707 0.498 1e-81
>gi|255583237|ref|XP_002532383.1| RNA binding protein, putative [Ricinus communis] gi|223527907|gb|EEF29995.1| RNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/303 (62%), Positives = 233/303 (76%), Gaps = 13/303 (4%)

Query: 13  MQYTYTAWVPTTYPPLPKIVTVKSKPSSAKTQTPIRYSAHEYINYNDNININDDADDGRK 72
           MQ TY +WVPT  P    +    SKP         R S         N +I++ A+   +
Sbjct: 1   MQSTYASWVPTVSPS--PLNLTNSKP---------RLSNTSPNQTQRNGDIDNSAE--VR 47

Query: 73  FALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTV 132
           F LP H+K+ITSTSNPF+KHC+KLRQSS YRH+HGSALVVGTTPIREI  F +SL+E TV
Sbjct: 48  FPLPTHIKSITSTSNPFIKHCVKLRQSSPYRHAHGSALVVGTTPIREICKFQKSLKEETV 107

Query: 133 RMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSID 192
            M+CL+L DK +VPEGLD+ ST T+RVS++VMK+LS +QS+ESIEAIALMK PTS F + 
Sbjct: 108 EMECLILPDKAKVPEGLDSSSTRTLRVSALVMKRLSQLQSTESIEAIALMKFPTSYFVVG 167

Query: 193 VNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKAL 252
            +QK+AD R WFPS HRILVL+GIQDPGNLGTL+R+A+AF+WGG+FLLPGCCDPF++KAL
Sbjct: 168 DHQKDADFRKWFPSPHRILVLEGIQDPGNLGTLVRSAVAFRWGGIFLLPGCCDPFNDKAL 227

Query: 253 RASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQVLQLSQELADSFAGVP 312
           +ASRGA FQ+PIVSGSW+HLE LKDEFQMK+LAGH   ++E   V +LSQ  ADS A +P
Sbjct: 228 KASRGASFQVPIVSGSWHHLEALKDEFQMKMLAGHPASDDEQTPVSELSQGFADSLADIP 287

Query: 313 LCL 315
           +CL
Sbjct: 288 ICL 290

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359495860|ref|XP_002266337.2| PREDICTED: uncharacterized tRNA/rRNA methyltransferase YsgA-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296090517|emb|CBI40848.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30691669|ref|NP_195515.2| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] gi|26450142|dbj|BAC42190.1| unknown protein [Arabidopsis thaliana] gi|90093284|gb|ABD85155.1| At4g38020 [Arabidopsis thaliana] gi|332661464|gb|AEE86864.1| tRNA/rRNA methyltransferase (SpoU) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449478075|ref|XP_004155215.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr1673-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297802134|ref|XP_002868951.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314787|gb|EFH45210.1| tRNA/rRNA methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357517191|ref|XP_003628884.1| RNA methyltransferase-like protein [Medicago truncatula] gi|355522906|gb|AET03360.1| RNA methyltransferase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|359807242|ref|NP_001241366.1| uncharacterized protein LOC100792782 [Glycine max] gi|255635868|gb|ACU18281.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224084459|ref|XP_002307305.1| predicted protein [Populus trichocarpa] gi|222856754|gb|EEE94301.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4467108|emb|CAB37542.1| hypothetical protein [Arabidopsis thaliana] gi|7270785|emb|CAB80467.1| hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
TAIR|locus:2121075352 AT4G38020 [Arabidopsis thalian 0.774 0.693 0.638 2.5e-81
UNIPROTKB|Q3ABT2258 CHY_1573 "RNA methyltransferas 0.250 0.306 0.451 2.7e-15
TIGR_CMR|CHY_1573258 CHY_1573 "RNA methyltransferas 0.250 0.306 0.451 2.7e-15
TIGR_CMR|BA_4805254 BA_4805 "RNA methyltransferase 0.190 0.236 0.516 1.1e-12
UNIPROTKB|E2QXE5 423 RNMTL1 "Uncharacterized protei 0.336 0.250 0.333 1.6e-08
UNIPROTKB|F1NG21 387 RNMTL1 "Uncharacterized protei 0.190 0.155 0.491 2.3e-08
UNIPROTKB|F1RHK0 424 RNMTL1 "Uncharacterized protei 0.517 0.384 0.291 1.3e-07
UNIPROTKB|E1BBM0417 RNMTL1 "Uncharacterized protei 0.520 0.393 0.275 2.1e-07
MGI|MGI:1914640 418 Rnmtl1 "RNA methyltransferase 0.190 0.143 0.475 2.8e-07
UNIPROTKB|Q9HC36 420 RNMTL1 "RNA methyltransferase- 0.203 0.152 0.430 6.2e-07
TAIR|locus:2121075 AT4G38020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
 Identities = 157/246 (63%), Positives = 195/246 (79%)

Query:    72 KFALPYHVKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERT 131
             + +LP HV +ITST+NPFVKHCLKLRQSSSYRH+HGS LVVGT PIRE+  F  + Q  T
Sbjct:    59 RVSLPSHVNSITSTTNPFVKHCLKLRQSSSYRHAHGSVLVVGTIPIREVCMFQTNKQGMT 118

Query:   132 VRMDCLLLLDKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSI 191
               ++CLLL ++ ++P+GL+++S   VRVSS+VMKKLSGVQS+ES+EAIALM+IP+S   +
Sbjct:   119 TEIECLLLHEEAKIPQGLESLSIRIVRVSSLVMKKLSGVQSTESVEAIALMRIPSSFTDL 178

Query:   192 -DVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEK 250
              D      DC  WFPS HR+LVLD IQDPGNLGTL+R+AMAF W G FLLPGCCDP+++K
Sbjct:   179 KDDKDIITDCNKWFPSAHRVLVLDSIQDPGNLGTLVRSAMAFNWDGAFLLPGCCDPYNDK 238

Query:   251 ALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGH-AGGNEEPRQVLQLSQELADSFA 309
             ALRASRGA FQLPIVSG+W HL++L++EFQMKLLAGH A   ++ + V +LS E A S A
Sbjct:   239 ALRASRGASFQLPIVSGNWNHLKLLENEFQMKLLAGHPATTTQKLKPVSKLSVEFAQSLA 298

Query:   310 GVPLCL 315
               PLCL
Sbjct:   299 EKPLCL 304
GO:0003723 "RNA binding" evidence=IEA;ISS
GO:0006396 "RNA processing" evidence=IEA;ISS
GO:0008173 "RNA methyltransferase activity" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
UNIPROTKB|Q3ABT2 CHY_1573 "RNA methyltransferase, TrmH family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1573 CHY_1573 "RNA methyltransferase, TrmH family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4805 BA_4805 "RNA methyltransferase, TrmH family" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXE5 RNMTL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG21 RNMTL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHK0 RNMTL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BBM0 RNMTL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1914640 Rnmtl1 "RNA methyltransferase like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9HC36 RNMTL1 "RNA methyltransferase-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00011631001
SubName- Full=Chromosome undetermined scaffold_324, whole genome shotgun sequence; (329 aa)
(Vitis vinifera)
Predicted Functional Partners:
rpl20
RecName- Full=50S ribosomal protein L20, chloroplastic;; Binds directly to 23S ribosomal RNA an [...] (117 aa)
•       0.687
GSVIVG00017183001
RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)
•       0.559

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
COG0566260 COG0566, SpoU, rRNA methylases [Translation, ribos 2e-24
pfam00588142 pfam00588, SpoU_methylase, SpoU rRNA Methylase fam 2e-16
TIGR00186237 TIGR00186, rRNA_methyl_3, rRNA methylase, putative 3e-10
>gnl|CDD|223640 COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
 Score = 98.9 bits (247), Expect = 2e-24
 Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 30/223 (13%)

Query: 82  ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
           ITS +NP VK   KLR         G  L+ G   + E       +         +L+ +
Sbjct: 1   ITSPANPRVKALKKLRGR------AGEFLIEGEHAVLEALASGPKIVR-------ILVTE 47

Query: 142 KV-----EVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQK 196
                  E+             VS  ++ KLSG ++ + I A+   +    +  +   + 
Sbjct: 48  GRLPRFEELLALAAAKGIPVYVVSEAILDKLSGTENHQGIVAVVKKRRYPLLDDLLDAEA 107

Query: 197 EADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASR 256
           +            +LVLDG+ DP NLG ++RTA AF   GV L     DP + K +RAS 
Sbjct: 108 QPL----------LLVLDGVTDPHNLGAIIRTADAFGVDGVILPKRRADPLNPKVIRASA 157

Query: 257 GACFQLPI--VSGSWYHLEVLKDEFQMKLLAGHAGGNEEPRQV 297
           GA F +P+  V+     L  L  E    ++A    G  +  + 
Sbjct: 158 GAAFHVPVIRVTNLARTLLELLKEAGFWVVATSLDGEVDLYET 200

Length = 260
>gnl|CDD|216010 pfam00588, SpoU_methylase, SpoU rRNA Methylase family Back     alignment and domain information
>gnl|CDD|129290 TIGR00186, rRNA_methyl_3, rRNA methylase, putative, group 3 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
COG0566260 SpoU rRNA methylases [Translation, ribosomal struc 100.0
PRK11181244 23S rRNA (guanosine-2'-O-)-methyltransferase; Prov 100.0
PRK10864346 putative methyltransferase; Provisional 100.0
TIGR00186237 rRNA_methyl_3 rRNA methylase, putative, group 3. t 100.0
KOG2506371 consensus SpoU rRNA Methylase family protein [Tran 100.0
PF00588142 SpoU_methylase: SpoU rRNA Methylase family; InterP 99.93
TIGR00185153 rRNA_methyl_2 rRNA methylase, putative, group 2. t 99.91
PRK11081229 tRNA guanosine-2'-O-methyltransferase; Provisional 99.9
PRK10358157 putative rRNA methylase; Provisional 99.89
KOG0838271 consensus RNA Methylase, SpoU family [RNA processi 99.85
TIGR00050233 rRNA_methyl_1 RNA methyltransferase, TrmH family, 99.79
PRK15114 245 tRNA (cytidine/uridine-2'-O-)-methyltransferase Tr 99.78
PRK10433228 putative RNA methyltransferase; Provisional 99.58
COG0219155 CspR Predicted rRNA methylase (SpoU class) [Transl 99.36
PF0803276 SpoU_sub_bind: RNA 2'-O ribose methyltransferase s 98.92
COG0565 242 LasT rRNA methylase [Translation, ribosomal struct 98.91
KOG08391477 consensus RNA Methylase, SpoU family [RNA processi 98.45
PF04705115 TSNR_N: Thiostrepton-resistance methylase, N termi 97.3
PRK03958176 tRNA 2'-O-methylase; Reviewed 90.86
COG1303179 Uncharacterized protein conserved in archaea [Func 89.11
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1e-43  Score=331.64  Aligned_cols=210  Identities=30%  Similarity=0.386  Sum_probs=181.7

Q ss_pred             ecCCCCHHHHHHHhhhccccccccCCcEEEEehHHHHHHHhcCCcccccceeeeEEEeccCcC--cccc---ccccCCce
Q 041553           82 ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVE--VPEG---LDNISTHT  156 (315)
Q Consensus        82 ItS~~N~~vK~~~kL~~~~k~R~~~g~~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~--l~~~---l~~~~~~v  156 (315)
                      |+|..|+++|.+++|      |++++.|++||.|+|+++|+++.       .+..+|++++..  +.++   +...++++
T Consensus         1 i~s~~n~~~~~~~~~------r~~~~~~~~~G~~~v~~al~~~~-------~i~~i~~~~~~~~~~~~~~~~~~~~~~~~   67 (260)
T COG0566           1 ITSPANPRVKALKKL------RGRAGEFLIEGEHAVLEALASGP-------KIVRILVTEGRLPRFEELLALAAAKGIPV   67 (260)
T ss_pred             CCCcchhhhHHHHHh------hcccCcEEEeeHHHHHHHHhcCC-------CceEEEEecccchhHHHHHHHHHhcCCeE
Confidence            689999999999998      67788999999999999999875       588999998854  2233   33457899


Q ss_pred             EEeCHHHHHhhcCCCCCcceeEEEEEecCCCCCccchhhhhcccccCCCCCcEEEEEecCCCcCcHHHHHHHHhHhcCCe
Q 041553          157 VRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGG  236 (315)
Q Consensus       157 ~~vs~~~l~kLs~~~~~qGi~avAv~~~p~~~~~l~~~~~~~~~~~~~~~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~  236 (315)
                      +.++++.+++++++.+|||+  +|++..+... .++++..     .  ...+++|+||+|+||||+|||||||+|||+++
T Consensus        68 ~~v~~~~l~~~~~~~~hqGi--~a~~~~~~~~-~~~~~~~-----~--~~~~l~lvLd~V~DP~NlGaIiRtA~a~Gv~~  137 (260)
T COG0566          68 YVVSEAILDKLSGTENHQGI--VAVVKKRRYP-LLDDLLD-----A--EAQPLLLVLDGVTDPHNLGAIIRTADAFGVDG  137 (260)
T ss_pred             EEECHHHHHHHhCCCCCCeE--EEEEeccccc-chhhhhh-----c--ccCCEEEEEecCcCCcchhhHHhhHHHhCCCE
Confidence            99999999999999999998  5666555432 3333221     0  14579999999999999999999999999999


Q ss_pred             EEECCCCCCCCChhHHHhhcccceeccEEEcc--HHHHHHHHhhCCcEEEEEecC-----------------CCCCCCCC
Q 041553          237 VFLLPGCCDPFSEKALRASRGACFQLPIVSGS--WYHLEVLKDEFQMKLLAGHAG-----------------GNEEPRQV  297 (315)
Q Consensus       237 Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~~--~~~l~~~~~~~g~~ivat~~~-----------------~G~E~~Gl  297 (315)
                      ||++++++|++|++++|+|+||+|++|+++.+  ..++.+++++.||+++||++.                 +|||++||
T Consensus       138 Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~~~~~~~~~G~~v~~t~~~~~~~~~~~~~~~~~aLvlG~Eg~Gl  217 (260)
T COG0566         138 VILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLARTLLELLKEAGFWVVATSLDGEVDLYETDLPKKTALVLGNEGEGL  217 (260)
T ss_pred             EEECCCccCCccceeEEecCChheeceeEEEeccHHHHHHHHHHcCeEEEEECCCCCcchhhccccCCEEEEECCCCCCc
Confidence            99999999999999999999999999988753  789999999899999999876                 99999999


Q ss_pred             CHHHHHhcCcEEEccCC
Q 041553          298 LQLSQELADSFAGVPLC  314 (315)
Q Consensus       298 s~~~~~~cD~~v~IPm~  314 (315)
                      |+++++.||..|+|||.
T Consensus       218 s~~~~~~~D~~v~IPm~  234 (260)
T COG0566         218 SRLLLEHADQLVRIPMA  234 (260)
T ss_pred             CHHHHhhCCEEEEecCC
Confidence            99999999999999995

>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional Back     alignment and domain information
>PRK10864 putative methyltransferase; Provisional Back     alignment and domain information
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3 Back     alignment and domain information
>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ] Back     alignment and domain information
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2 Back     alignment and domain information
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional Back     alignment and domain information
>PRK10358 putative rRNA methylase; Provisional Back     alignment and domain information
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification] Back     alignment and domain information
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1 Back     alignment and domain information
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional Back     alignment and domain information
>PRK10433 putative RNA methyltransferase; Provisional Back     alignment and domain information
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications Back     alignment and domain information
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification] Back     alignment and domain information
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO) Back     alignment and domain information
>PRK03958 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>COG1303 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
2i6d_A257 The Structure Of A Putative Rna Methyltransferase O 2e-07
1ipa_A274 Crystal Structure Of Rna 2'-O Ribose Methyltransfer 2e-07
3gyq_A272 Structure Of The Thiostrepton-Resistance Methyltran 3e-07
3nk6_A277 Structure Of The Nosiheptide-Resistance Methyltrans 3e-06
>pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The Trmh Family From Porphyromonas Gingivalis Length = 257 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/48 (56%), Positives = 34/48 (70%)
Query: 211 LVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGA 258
           L+LDG+QDPGN+GT+LRTA  F    V+L  G  D FS K ++AS GA
Sbjct: 106 LLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASXGA 153
>pdb|1IPA|A Chain A, Crystal Structure Of Rna 2'-O Ribose Methyltransferase Length = 274 Back     alignment and structure
>pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase S-Adenosyl-L-Methionine Complex Length = 272 Back     alignment and structure
>pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase Length = 277 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
1ipa_A274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 4e-41
1x7o_A287 Avirb, rRNA methyltransferase; SPOU, C-terminal kn 7e-36
2i6d_A257 RNA methyltransferase, TRMH family; stuctural geno 2e-33
3nk6_A277 23S rRNA methyltransferase; nosiheptide, nosihepti 3e-32
1v2x_A194 TRNA (GM18) methyltransferase; DEEP trefoil knot, 1e-07
1gz0_A253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 6e-07
1zjr_A211 TRNA (guanosine-2'-O-)-methyltransferase; methylas 6e-06
2ha8_A184 TAR (HIV-1) RNA loop binding protein; methyltransf 9e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Length = 274 Back     alignment and structure
 Score =  143 bits (362), Expect = 4e-41
 Identities = 55/217 (25%), Positives = 88/217 (40%), Gaps = 16/217 (7%)

Query: 82  ITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLD 141
           ITST+NP +K   +L +   +R S    L+ G   I         L++  V    L   +
Sbjct: 3   ITSTANPRIKELARLLERK-HRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPEE 61

Query: 142 KVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCR 201
           +              + VS  V+KKLS   +   +  IAL ++P      +         
Sbjct: 62  QQVYAALGRVGRLALLEVSEAVLKKLSVRDNPAGL--IALARMPERTLE-EYRPSPDAL- 117

Query: 202 SWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQ 261
                   ILV  G++ PGNLG +LR+A A     V L+ G  D +S + +R S G  F 
Sbjct: 118 --------ILVAVGLEKPGNLGAVLRSADAAGAEAV-LVAGGVDLYSPQVIRNSTGVVFS 168

Query: 262 LPIVSGSWYH-LEVLKDEFQMKLLAGHAGGNEEPRQV 297
           L  ++ S    L+ +K +  + L+A          + 
Sbjct: 169 LRTLAASESEVLDWIK-QHNLPLVATTPHAEALYWEA 204
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Length = 287 Back     alignment and structure
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Length = 257 Back     alignment and structure
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Length = 277 Back     alignment and structure
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Length = 194 Back     alignment and structure
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Length = 253 Back     alignment and structure
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Length = 211 Back     alignment and structure
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Length = 184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
3nk6_A277 23S rRNA methyltransferase; nosiheptide, nosihepti 100.0
1ipa_A274 RRMH, RNA 2'-O-ribose methyltransferase; DEEP tref 100.0
1x7o_A287 Avirb, rRNA methyltransferase; SPOU, C-terminal kn 100.0
2i6d_A257 RNA methyltransferase, TRMH family; stuctural geno 100.0
1gz0_A253 Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O 100.0
3e5y_A160 TRMH family RNA methyltransferase; ssgcid, protein 99.94
3n4j_A165 RNA methyltransferase; center for structural genom 99.94
2ha8_A184 TAR (HIV-1) RNA loop binding protein; methyltransf 99.92
3l8u_A182 SMU.1707C, putative rRNA methylase; methyltransfer 99.92
1v2x_A194 TRNA (GM18) methyltransferase; DEEP trefoil knot, 99.92
1zjr_A211 TRNA (guanosine-2'-O-)-methyltransferase; methylas 99.91
3kty_A173 Probable methyltransferase; alpha-beta-alpha sandw 99.88
3ilk_A 244 Uncharacterized tRNA/RRNA methyltransferase HI038; 99.83
3onp_A 249 TRNA/RRNA methyltransferase (SPOU); structural gen 99.82
3ic6_A223 Putative methylase family protein; putative methyl 99.81
3dcm_X192 AdoMet, uncharacterized protein TM_1570; trefoil k 97.47
2yy8_A201 ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, 81.33
2o3a_A178 UPF0106 protein AF_0751; structural genomics, unkn 80.55
>3nk6_A 23S rRNA methyltransferase; nosiheptide, nosiheptide-resistance methyltransferase, 23S R methyltransferase; 2.00A {Streptomyces actuosus} PDB: 3nk7_A* 3gyq_A* Back     alignment and structure
Probab=100.00  E-value=1.9e-46  Score=351.50  Aligned_cols=215  Identities=20%  Similarity=0.278  Sum_probs=178.4

Q ss_pred             eeeecCCCCHHHHHHHhhhccccccccCCcEEEEehHHHHHHHhcCCcccccceeeeEEEeccCcCc-cccc---cccCC
Q 041553           79 VKNITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLLDKVEV-PEGL---DNIST  154 (315)
Q Consensus        79 ~~~ItS~~N~~vK~~~kL~~~~k~R~~~g~~lVeG~~~V~EaL~~~~~~~~~~~~i~~l~v~e~~~l-~~~l---~~~~~  154 (315)
                      |+.|||.+||++|++++|+  +|+|+++|.|+|||.|+|+|||+++.       .++.||++++... .+++   ...++
T Consensus         7 ~~~I~S~~n~~iK~~~~L~--~k~R~~~g~flveG~~~V~eaL~~~~-------~i~~l~~~~~~~~~~~l~~~~~~~~~   77 (277)
T 3nk6_A            7 PAIITNASDPAVQRIIDVT--KHSRASIKTTLIEDTEPLMECIRAGV-------QFIEVYGSSGTPLDPALLDLCRQREI   77 (277)
T ss_dssp             CCTTSBCSSCSHHHHHHHH--HTC----CEEEEESHHHHHHHHHTTC-------CEEEEEEETTSCCCHHHHHHHHHTTC
T ss_pred             ceeecCCCChHHHHHHHHh--hhhHhhcCCEEEEeHHHHHHHHhCCC-------CeEEEEEeCCccCcHHHHHHHHhcCC
Confidence            6789999999999999998  58999999999999999999999864       5888999886421 2222   34578


Q ss_pred             ceEEeCHHHHHhhcCCCCCcceeEEEEEecCCCCCccchhhhhcccccCCCCCcEEEEEecCCCcCcHHHHHHHHhHhcC
Q 041553          155 HTVRVSSVVMKKLSGVQSSESIEAIALMKIPTSVFSIDVNQKEADCRSWFPSIHRILVLDGIQDPGNLGTLLRTAMAFKW  234 (315)
Q Consensus       155 ~v~~vs~~~l~kLs~~~~~qGi~avAv~~~p~~~~~l~~~~~~~~~~~~~~~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv  234 (315)
                      +++.++++.|++++++.+|||+  +|++..|.. .+++++...        ..+ +|+||+|+||+|+|||+|||+|||+
T Consensus        78 ~v~~v~~~~l~~ls~~~~~qGv--~a~~~~~~~-~~l~~~~~~--------~~~-~lvLd~v~dP~NlGaI~Rta~a~G~  145 (277)
T 3nk6_A           78 PVRLIDVSIVNQLFKAERKAKV--FGIARVPRP-ARLADIAER--------GGD-VVVLDGVKIVGNIGAIVRTSLALGA  145 (277)
T ss_dssp             CEEEECHHHHTTCC-----CCE--EEEEECCCC-CCHHHHHHH--------CSC-EEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             cEEEECHHHHHHhhCCCCCCeE--EEEEecCCC-CCHHHHhcc--------CCC-EEEEEcCCCcchHHHHHHHHHHcCC
Confidence            9999999999999999999998  577766633 255554321        235 9999999999999999999999999


Q ss_pred             CeEEECC-CCCCCCChhHHHhhcccceeccEEEccHHHHHHHHhhCCcEEEEEecC------------------CCCCCC
Q 041553          235 GGVFLLP-GCCDPFSEKALRASRGACFQLPIVSGSWYHLEVLKDEFQMKLLAGHAG------------------GNEEPR  295 (315)
Q Consensus       235 ~~Vil~~-~~~d~~~~kv~RaS~Ga~~~lpi~~~~~~~l~~~~~~~g~~ivat~~~------------------~G~E~~  295 (315)
                      ++|++++ +++|+|+++++|+||||+|++|+++.++.++++.+++.|++++|++..                  ||||+.
T Consensus       146 ~~vil~~~~~~~~~~~~v~ras~Ga~~~l~i~~~~l~~~l~~lk~~g~~v~~~~~~~~~~~~~~~~~~~~~alv~GnE~~  225 (277)
T 3nk6_A          146 AGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKG  225 (277)
T ss_dssp             SEEEEESCCCSCTTCHHHHHHTTTCTTTSCEEECCHHHHHHHHHHTTCCEEEECTTCSEEGGGGGGCCSCCEEEEEBTTT
T ss_pred             CEEEEcCCCCcCCCCHHHHHHhCChhhcCeEEEECHHHHHHHHHhcCCeEEEEecCCCcchhhhhccCCCEEEEECCCCC
Confidence            9999999 899999999999999999999999888888888889999999998653                  999999


Q ss_pred             CCCHHHHHhcCcEEEccCC
Q 041553          296 QVLQLSQELADSFAGVPLC  314 (315)
Q Consensus       296 Gls~~~~~~cD~~v~IPm~  314 (315)
                      ||++++++.||..|+|||.
T Consensus       226 Gls~~~~~~~d~~v~IPm~  244 (277)
T 3nk6_A          226 GPSGLFQEASAGTVSIPML  244 (277)
T ss_dssp             BSCHHHHHHCSCEEECCCS
T ss_pred             CCCHHHHHhCCeEEEECCC
Confidence            9999999999999999994
>1ipa_A RRMH, RNA 2'-O-ribose methyltransferase; DEEP trefoil knot, rossmann fold, EL30-like fold, riken structural genomics/proteomics initiative; 2.40A {Thermus thermophilus} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
>1x7o_A Avirb, rRNA methyltransferase; SPOU, C-terminal knot, seMet; 2.37A {Streptomyces viridochromogenes} PDB: 1x7p_A* Back     alignment and structure
>2i6d_A RNA methyltransferase, TRMH family; stuctural genomics, PORP gingivalis, knot, structural genomics, PSI-2, protein struc initiative; HET: MSE; 1.85A {Porphyromonas gingivalis} Back     alignment and structure
>1gz0_A Hypothetical tRNA/RRNA methyltransferase YJFH; 2'O-methyltransferase, knot, montreal- kingston bacterial structural genomics initiative, BSGI; 2.5A {Escherichia coli} SCOP: c.116.1.1 d.79.3.3 Back     alignment and structure
>3e5y_A TRMH family RNA methyltransferase; ssgcid, protein knot, decode, structural genomics; 2.40A {Burkholderia pseudomallei 305} SCOP: c.116.1.0 Back     alignment and structure
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A* Back     alignment and structure
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens} Back     alignment and structure
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted protein; 2.00A {Streptococcus mutans} SCOP: c.116.1.0 Back     alignment and structure
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1 Back     alignment and structure
>1zjr_A TRNA (guanosine-2'-O-)-methyltransferase; methylase, RNA modifying enzyme, topological knot; 1.85A {Aquifex aeolicus} Back     alignment and structure
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis} Back     alignment and structure
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae} Back     alignment and structure
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Back     alignment and structure
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090} Back     alignment and structure
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Back     alignment and structure
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii} Back     alignment and structure
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d1ipaa2105 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain 5e-13
d1gz0a1166 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Esch 5e-10
d1mxia_156 c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransf 5e-08
d1ipaa1158 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal doma 9e-08
d1v2xa_191 c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH 6e-07
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 105 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: L30e-like
family: RNA 2'-O ribose methyltransferase substrate binding domain
domain: RrmA (RrmH), N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 62.3 bits (151), Expect = 5e-13
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 81  NITSTSNPFVKHCLKLRQSSSYRHSHGSALVVGTTPIREIYNFNRSLQERTVRMDCLLLL 140
            ITST+NP +K   +L +   +R S    L+ G   I         L++  V    L   
Sbjct: 2   RITSTANPRIKELARLLERK-HRDSQRRFLIEGAREIERALQAGIELEQALVWEGGLNPE 60

Query: 141 DKVEVPEGLDNISTHTVRVSSVVMKKLSGVQSSESIEAIALMKIP 185
           ++              + VS  V+KKLS   +   +  IAL ++P
Sbjct: 61  EQQVYAALGRVGRLALLEVSEAVLKKLSVRDNPAGL--IALARMP 103
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 166 Back     information, alignment and structure
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Length = 156 Back     information, alignment and structure
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 158 Back     information, alignment and structure
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1gz0a1166 RlmB, C-terminal domain {Escherichia coli [TaxId: 99.94
d1ipaa1158 RrmA (RrmH), C-terminal domain {Thermus thermophil 99.93
d1v2xa_191 tRNA (Gm18) methyltransferase TrmH {Thermus thermo 99.86
d1mxia_156 Hypothetical tRNA/rRNA methyltransfease HI0766 (Yi 99.79
d1ipaa2105 RrmA (RrmH), N-terminal domain {Thermus thermophil 99.7
d1gz0a276 RlmB, N-terminal domain {Escherichia coli [TaxId: 98.7
>d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: SpoU-like RNA 2'-O ribose methyltransferase
domain: RlmB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2e-27  Score=203.77  Aligned_cols=109  Identities=22%  Similarity=0.312  Sum_probs=102.7

Q ss_pred             CCcEEEEEecCCCcCcHHHHHHHHhHhcCCeEEECCCCCCCCChhHHHhhcccceeccEEEc-cHHHHHHHHhhCCcEEE
Q 041553          206 SIHRILVLDGIQDPGNLGTLLRTAMAFKWGGVFLLPGCCDPFSEKALRASRGACFQLPIVSG-SWYHLEVLKDEFQMKLL  284 (315)
Q Consensus       206 ~~~~~lvLD~I~DP~NlGaIiRsA~A~Gv~~Vil~~~~~d~~~~kv~RaS~Ga~~~lpi~~~-~~~~l~~~~~~~g~~iv  284 (315)
                      ..+++|+||+|+||+|+|+|+|||+|||+++|++.+++++++++++.|+|+|+.+++|+.+. ++.++.+.+++.++.++
T Consensus        16 ~~~~~vvLd~i~~p~N~GaiiRta~afG~~~v~~~~~~~~~~~~~~~r~s~g~~~~v~~~~~~~~~~~l~~~~~~~~~~~   95 (166)
T d1gz0a1          16 DQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTMRMLQEENIWIV   95 (166)
T ss_dssp             SSCEEEEEESCCCHHHHHHHHHHHHHHTCSEEEEESSSSCCCCHHHHHHHTTHHHHSCEEEESCHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhcCCceeeeecccccccchhhheeccCcceEeceeecCCHHHHHHHhcccccccc
Confidence            46799999999999999999999999999999999999999999999999999999999987 58888888899999999


Q ss_pred             EEecC-----------------CCCCCCCCCHHHHHhcCcEEEccCC
Q 041553          285 AGHAG-----------------GNEEPRQVLQLSQELADSFAGVPLC  314 (315)
Q Consensus       285 at~~~-----------------~G~E~~Gls~~~~~~cD~~v~IPm~  314 (315)
                      +++..                 ||+|+.||++++++.||..|+|||.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~lv~G~E~~Gls~~~l~~~d~~v~IPm~  142 (166)
T d1gz0a1          96 GTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMA  142 (166)
T ss_dssp             EECTTCSEEGGGSCCCSSEEEEEEBTTTBSCHHHHHTCSEEEECCCS
T ss_pred             cccccccccHHHhhccCCeEEEeccCcCCCCHHHHHhCCEEEEEcCc
Confidence            98764                 9999999999999999999999995
>d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mxia_ c.116.1.1 (A:) Hypothetical tRNA/rRNA methyltransfease HI0766 (YibK homologue) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ipaa2 d.79.3.3 (A:1-105) RrmA (RrmH), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gz0a2 d.79.3.3 (A:2-77) RlmB, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure