Citrus Sinensis ID: 041621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPIDDNSSCSEPSPSNWLVSRSGQPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVEDILESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQDQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHEEcccHccccccccHHHHHHHccccEEEEEEcccccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHEcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
menstnsdetydrgcrpspssidqndqtstsetpvystmsadsfayhrtnsetsafsdpiddnsscsepspsnwlvsrsgqpalgrpemrqqktvvdknlddqesMDLELELMKERFAKLLlgedmsgsgkgVCTAVTISNAITNLYATVfgqnlrlaplkpeKKALWKREMDCLLSVCDYIVEFVSesqnlrdgreVEDILESFQDTEFwyaeqgsmssnstrsgsFRRVIVQRKeekwwlpvpcvppgglseksrkHLRHKRDCANQIHKAAMAINSTILaemeipdsymanlpksgkaclGDFIYRYMyttekfspdhlldCLSIASEHEALELADHVEASMYTWRRkacmshskssWDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDrsvrnqdq
Flexible Loop (DISEMBL)
menstnsdetydrgcrpspssidqndqtstsetpvYSTMSADSFAYHRTNSETSAFSDPIDDNSSCSEPSPSNWLVSRSgqpalgrpemrqqktvvdknlddqESMDLELELMKERFAKLLLgedmsgsgKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVsesqnlrdgreVEDILESFQDTEFWYAEqgsmssnstrsgsfRRVIVQrkeekwwlpvpcvppgglseksrkHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQDQ
Low Complexity Region (SEG)
MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPIDDNSSCSEPSPSNWLVSRSGQPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVEDILESFQDTEFWYAEQGsmssnstrsgsfrrVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQDQ
Disordered region (IsUnstruct)
****************************************************************************************************************MKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVEDILESFQDTEFWYA**************FRRVIVQRKEEKWWLPVPCVPP***************DCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMS**********************HLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVD********
Disordered Region (DISOPRED)
***********************************************************************************************************************************GVCTAVTISNAITNLYATVFGQNLRLAPLKP****LWKREMDCLLSVCDYIVEFVSESQNLRDGREVEDILESFQDTEFWYAE*************************WWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTW************************RSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFV*********
Disordered Region (DISEMBL)
**********************************VYSTMSADSFAYHRTNSETS***********************RSGQPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVEDILESFQDTEFWYAEQ***********SFRRVIVQRKEEKWWLPVPCVPPGGL************DCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRK*********WDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQDQ
Disordered Region (DISPRO)
*********************************************************************************************************MDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVEDILESFQDTEFWYAEQG******************RKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACM**S*SSWDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVR****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPIDDNSSCSEPSPSNWLVSRSGQPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVEDILESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
Q9LQ89	485	Rop guanine nucleotide ex	yes	no	0.991	0.923	0.649	1e-175
Q93ZY2	548	Rop guanine nucleotide ex	no	no	0.758	0.625	0.517	1e-102
Q9LV40	523	Rho guanine nucleotide ex	no	no	0.719	0.621	0.455	4e-87

>sp|Q9LQ89|ROGF2_ARATH Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=2

 Score =  613 bits (1582), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 317/488 (64%), Positives = 372/488 (76%), Gaps = 40/488 (8%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSA--FSD 58
           MEN  N +E  D G   SP  ID ND  S SETPVYSTMS DSFAYHRT SETS   FSD
Sbjct: 1   MENLPNHEENDDVGYHQSPGPIDPNDH-SASETPVYSTMSTDSFAYHRTCSETSGGGFSD 59

Query: 59  PIDDNSS-CSEPSPSNWLV-------SRSGQPALGRPEMRQQKTVVDKNLDDQESMDLEL 110
            ID+ SS C+E SPS+W V       + S  P +   +++  +   D++L  QE  + EL
Sbjct: 60  QIDETSSFCTEASPSDWPVLTESNNSASSNFPTVF--DLKHNQIETDEHLAVQEISEPEL 117

Query: 111 ELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKR 170
           E MKERF+KLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRL PL+ E+K  WKR
Sbjct: 118 ETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTWKR 177

Query: 171 EMDCLLSVCDYIVEFVSESQNLRDGREVE-------------------------DILESF 205
           EM+CLLSVCDYI EF+ +SQNL +G  VE                         + L+SF
Sbjct: 178 EMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALDSF 237

Query: 206 QDTEFWYAEQGSMSSNSTRS--GSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHK 263
           Q TEFWYAE+GS+S  STRS  GSFR+VIVQRKEEKWWLP+P VP  GLSEK+RK L+ K
Sbjct: 238 QKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKARKQLKSK 297

Query: 264 RDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLL 323
           R+  NQIHKAAMAINS+IL EM+IPDSYMA LPKSGKA  GD IYR+M ++ +FSP+ LL
Sbjct: 298 RESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGRFSPEKLL 357

Query: 324 DCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAAR 383
           D L I SEHEAL+LAD VEASMYTWRRKAC+++SKSSW+MVKDLMS T+RSDKN++LA R
Sbjct: 358 DRLKIVSEHEALQLADRVEASMYTWRRKACLNNSKSSWNMVKDLMSITERSDKNYVLAER 417

Query: 384 AESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFV 443
           AESLLF LKQRYPEL+QTSLD CKI CN+DVG+AVLESYSRVLEGLAFN VAW++DVL+V
Sbjct: 418 AESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYV 477

Query: 444 DRSVRNQD 451
           D+++R ++
Sbjct: 478 DKTMRGEE 485

Acts as an activator of Rop GTPases by exchanging GDP with GTP.
Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZY2|ROGF1_ARATH Rop guanine nucleotide exchange factor 1 OS=Arabidopsis thaliana GN=ROPGEF1 PE=1 SV=2

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 197/381 (51%), Positives = 257/381 (67%), Gaps = 38/381 (9%)

Query: 101 DDQESMDL-ELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAP 159
           D Q   DL E+E+MKERFAKLLLGEDMSG GKGVCTA+ ISNAITNL ATVFG+  RL P
Sbjct: 81  DKQPDNDLSEIEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFGELWRLEP 140

Query: 160 LKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVE-------------------- 199
           L P+KKA+W+RE++ LL V D IVE +   Q    G   E                    
Sbjct: 141 LAPQKKAMWRRELEWLLCVSDSIVELIPSIQQFPGGGTYEIMETRPRSDLYANLPALKKL 200

Query: 200 -----DILESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSE 254
                D+L++F DTEFWY ++G +  +  +  S+      R+E+KWWLP P VPP GLSE
Sbjct: 201 DAMLIDMLDAFSDTEFWYTDRGIVLGDCDKD-SYNSPASVRQEDKWWLPCPKVPPNGLSE 259

Query: 255 KSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTT 314
           ++RK L+  RD ANQI KAA+AINS +LAEMEIPD Y+  LPKSGK CLG+ IY+Y+ T 
Sbjct: 260 EARKKLQQCRDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYL-TA 318

Query: 315 EKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSK------SSW-DMVKDL 367
            KFSP+ LLDCL ++SEH+ LE+A+ +EA+++ WR+K    H K      SSW   VK L
Sbjct: 319 NKFSPECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKKQAKLKLSSWGGKVKGL 378

Query: 368 MSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLE 427
           +++ +R+D    L  RAE+LL  L+ R+P L QT+LD  KIQ N+DVGQ++LESYSRV+E
Sbjct: 379 VNDNERND---FLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVME 435

Query: 428 GLAFNTVAWVEDVLFVDRSVR 448
            +AFN  A ++DVL+VD ++R
Sbjct: 436 SMAFNITARIDDVLYVDDAMR 456

Acts as an activator of Rop GTPases by exchanging GDP with GTP. Stimulates Rop1 to control polarized pollen tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV40|ROGF8_ARATH Rho guanine nucleotide exchange factor 8 OS=Arabidopsis thaliana GN=ROPGEF8 PE=1 SV=1

 Score =  322 bits (825), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 167/367 (45%), Positives = 233/367 (63%), Gaps = 42/367 (11%)

Query: 104 ESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPE 163
           E    ++E+MK+RFAKLLLGEDMSG GKGV +A+ +SNAITNL A++FG+  +L P+  +
Sbjct: 80  ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQD 139

Query: 164 KKALWKREMDCLLSVCDYIVEFVSESQNLRDG---------------------REVE--- 199
           ++A WK+E+D LLSV D+IVEFV   Q  +DG                     R+++   
Sbjct: 140 RQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAML 199

Query: 200 -DILESFQD-TEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSR 257
            D L++F+   EFWY  + S      R+         R  +KWWLP   VPPGGLSE SR
Sbjct: 200 IDTLDNFRGHNEFWYVSRDSEEGQQARN--------DRTNDKWWLPPVKVPPGGLSEPSR 251

Query: 258 KHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKF 317
           + L  ++D   Q+ KAAMAIN+ +L+EMEIP+SY+ +LPK+G+A LGD IY+ + T E F
Sbjct: 252 RMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSI-TEEWF 310

Query: 318 SPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKN 377
            P+  L  L +++EH+ L+L + +EAS+  W+RK     +KSSW     L       +K 
Sbjct: 311 DPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSL-------EKR 363

Query: 378 HLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWV 437
            L   RAE++L  LKQ++P L Q+SLD  KIQ N+DVGQAVLESYSR+LE LA+  ++ +
Sbjct: 364 ELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRI 423

Query: 438 EDVLFVD 444
           EDVL+ D
Sbjct: 424 EDVLYTD 430


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,930,821
Number of Sequences: 539616
Number of extensions: 6578163
Number of successful extensions: 22704
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 22413
Number of HSP's gapped (non-prelim): 309
length of query: 452
length of database: 191,569,459
effective HSP length: 121
effective length of query: 331
effective length of database: 126,275,923
effective search space: 41797330513
effective search space used: 41797330513
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)

Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop GTPases by exchanging GDP with GTP. Active as homodimer.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
224127676	473	predicted protein [Populus trichocarpa]	0.984	0.940	0.743	0.0
255541596	471	Rop guanine nucleotide exchange factor,	0.949	0.910	0.737	0.0
356504716	481	PREDICTED: rop guanine nucleotide exchan	0.993	0.933	0.676	0.0
356520430	491	PREDICTED: LOW QUALITY PROTEIN: rop guan	0.995	0.916	0.670	0.0
332688631	470	RopGEF2 [Medicago truncatula]	0.964	0.927	0.662	1e-178
297810135	476	At4g00460 [Arabidopsis lyrata subsp. lyr	0.984	0.934	0.657	1e-174
449441640	468	PREDICTED: rop guanine nucleotide exchan	0.973	0.940	0.670	1e-174
15223455	485	Rop guanine nucleotide exchange factor 2	0.991	0.923	0.649	1e-173
186511392	473	RHO guanyl-nucleotide exchange factor 3	0.977	0.934	0.649	1e-171
225454240	504	PREDICTED: rop guanine nucleotide exchan	0.982	0.880	0.619	1e-161

>gi|224127676|ref|XP_002320133.1| predicted protein [Populus trichocarpa] gi|222860906|gb|EEE98448.1| predicted protein [Populus trichocarpa]

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/480 (74%), Positives = 403/480 (83%), Gaps = 35/480 (7%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPI 60
           M+NS++ DE  D G +PSPSS+DQND  +  ETPVYSTMS DSF + RT SETSAFSDPI
Sbjct: 1   MDNSSSFDEVSDPGYQPSPSSLDQNDHPAV-ETPVYSTMSGDSFMFGRTYSETSAFSDPI 59

Query: 61  DDNSSCSEPSPSNWLVSRSG---QPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERF 117
           DDNS  SEPSPS+W V++SG   Q  L R EM+QQK V D  LDDQES+DLELE+MKERF
Sbjct: 60  DDNSYSSEPSPSHWPVTKSGAQHQAMLRRLEMKQQKQVADDKLDDQESVDLELEMMKERF 119

Query: 118 AKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLS 177
           +KLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRL PLKPEKK++WKREMDCLLS
Sbjct: 120 SKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLKPEKKSMWKREMDCLLS 179

Query: 178 VCDYIVEFVSESQNLRDGREVE-------------------------DILESFQDTEFWY 212
           VCDYIVEF+ +SQNL+DG  +E                         ++L+SFQDTEFWY
Sbjct: 180 VCDYIVEFIPKSQNLQDGTVLEVMESRPRLDIHINLPALRKLDAMLMEVLDSFQDTEFWY 239

Query: 213 AEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHK 272
           AEQGSMSSNST SGSFRRVIVQRKEEKWW+PVPCVP GGLSEKSRKHLRHKRDCA QIHK
Sbjct: 240 AEQGSMSSNSTLSGSFRRVIVQRKEEKWWVPVPCVPSGGLSEKSRKHLRHKRDCAYQIHK 299

Query: 273 AAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEH 332
           A+MAINS+ILAEMEIP++Y+A+LPKSG+A LGD IYRY+YT +KFSP HLLDCL++ASEH
Sbjct: 300 ASMAINSSILAEMEIPETYIASLPKSGRASLGDTIYRYLYTADKFSPGHLLDCLNLASEH 359

Query: 333 EALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYLK 392
           EAL+LAD VEASMYTWRRKAC+SHSKSSW+MVKDLMS+ DR+DKNH+LA RAE+LLF LK
Sbjct: 360 EALQLADRVEASMYTWRRKACLSHSKSSWNMVKDLMSDIDRTDKNHILAERAETLLFCLK 419

Query: 393 QRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQDQ 452
           QRYPEL+QTSLDTCKIQ NQ     +LESYSRVLEGLAFN VAW+EDVLFVD   RNQ+Q
Sbjct: 420 QRYPELSQTSLDTCKIQYNQ---ATILESYSRVLEGLAFNIVAWIEDVLFVD---RNQEQ 473

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541596|ref|XP_002511862.1| Rop guanine nucleotide exchange factor, putative [Ricinus communis] gi|223549042|gb|EEF50531.1| Rop guanine nucleotide exchange factor, putative [Ricinus communis]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/468 (73%), Positives = 390/468 (83%), Gaps = 39/468 (8%)

Query: 14  GCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPIDDNSSCSEPSPSN 73
           G +PSPSS DQ      +ETP +ST S DSF + RT SETS  SDPIDDNS   EPSPS+
Sbjct: 14  GYQPSPSSFDQ------TETPGFSTTSGDSFLFRRTYSETSTVSDPIDDNSYSCEPSPSH 67

Query: 74  WLVSRSG---QPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERFAKLLLGEDMSGSG 130
           W  ++S    QP LGR  M+Q+  +VD    DQE++D ELE+MKERF+KLLLGEDMSGSG
Sbjct: 68  WPANKSATRNQPVLGRLGMKQRMHIVD----DQETVDSELEMMKERFSKLLLGEDMSGSG 123

Query: 131 KGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFV-SES 189
           KGVCTAVTISNAITNLYATVFGQ LRL PL+PEKKA+WKREMDCLLSVCDYI+EF  ++S
Sbjct: 124 KGVCTAVTISNAITNLYATVFGQTLRLEPLQPEKKAMWKREMDCLLSVCDYILEFFPAKS 183

Query: 190 QNLRDGREVE-------------------------DILESFQDTEFWYAEQGSMSSNSTR 224
           QNL+DG  +E                         +IL+SFQD EFWYAEQGSMSSNSTR
Sbjct: 184 QNLKDGTALEVMESRPRSDIYINLPALRKLDALLIEILDSFQDNEFWYAEQGSMSSNSTR 243

Query: 225 SGSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAE 284
           SGSFRRVIVQRKEEKWW+PVPCVPPGG+SEKSRKHLRHKRDCANQIHKAAMAINS+ILAE
Sbjct: 244 SGSFRRVIVQRKEEKWWVPVPCVPPGGISEKSRKHLRHKRDCANQIHKAAMAINSSILAE 303

Query: 285 MEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEAS 344
           M+IPD+YMA+LPKSGKA LGD IYRYM TT+KFSPD++L+CL++ASEHEALELAD VEAS
Sbjct: 304 MDIPDTYMASLPKSGKASLGDIIYRYMCTTDKFSPDNVLNCLNLASEHEALELADRVEAS 363

Query: 345 MYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLD 404
           MYTWRRKACMSHSKSSW MVK+ MS+ DR+DKNH+LA RAESLLF LKQRYPEL+QTSLD
Sbjct: 364 MYTWRRKACMSHSKSSWGMVKEFMSDLDRTDKNHVLAERAESLLFCLKQRYPELSQTSLD 423

Query: 405 TCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQDQ 452
           TCKIQ N+DVGQA+LESYSRVLEGLAFN VAW+EDVLFVD+SVRNQD+
Sbjct: 424 TCKIQYNRDVGQAILESYSRVLEGLAFNLVAWIEDVLFVDKSVRNQDE 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504716|ref|XP_003521141.1| PREDICTED: rop guanine nucleotide exchange factor 2-like [Glycine max]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/482 (67%), Positives = 389/482 (80%), Gaps = 33/482 (6%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYS-TMSADSFAYHRTNSETSAFSDP 59
           M++S+N D+  D G +PSPSS+DQND  S +ET  YS  +S +SFAY R+NSE S FS+P
Sbjct: 1   MDSSSNFDDNSDVGYQPSPSSVDQNDH-SITETVGYSPLLSGESFAYCRSNSEVSNFSEP 59

Query: 60  IDDNSSCS-EPSPSNWLVSRSG--QPALGRPEMRQQKTVVDKNLDDQESMDLELELMKER 116
           IDDNS  S +PSPS W   + G  Q +L R  M+Q +  +D+  DD + ++ EL++M+ER
Sbjct: 60  IDDNSFASDQPSPSLWTTMKHGASQASLSRLGMKQHRNSLDEKSDDLDLLETELDMMRER 119

Query: 117 FAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLL 176
           FAKLLLGEDMSG GKGVCTAVT+SN+ITNLYAT FGQNL+L PLKPEKKA+WKREM+CLL
Sbjct: 120 FAKLLLGEDMSGGGKGVCTAVTVSNSITNLYATAFGQNLKLEPLKPEKKAMWKREMNCLL 179

Query: 177 SVCDYIVEFVSESQNLRDGREVE-------------------------DILESFQDTEFW 211
           SVCDYIVEF   +Q L DG  VE                         +IL+SF+DTEFW
Sbjct: 180 SVCDYIVEFAPTAQYLEDGTIVEMMSSRPRSDVYINLPALQKLDTMLIEILDSFKDTEFW 239

Query: 212 YAEQGSMSSNSTRS--GSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQ 269
           YAEQGS+S NSTRS  GSFRR IVQRK+EKWWLPVPCV PGGLS+KSRKHL  KRDCANQ
Sbjct: 240 YAEQGSISGNSTRSRGGSFRR-IVQRKDEKWWLPVPCVHPGGLSDKSRKHLNEKRDCANQ 298

Query: 270 IHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIA 329
           IHKAAMAINS++LAEM+IP++YM+NLPKSG+  LGD IYRYMY+T+KFSPDHLLDCL I+
Sbjct: 299 IHKAAMAINSSVLAEMDIPETYMSNLPKSGRTSLGDTIYRYMYSTDKFSPDHLLDCLKIS 358

Query: 330 SEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLF 389
           SEHEALELAD VE+SM+TWRRKAC+SHSK+SW+ VKDLM +TDRSDKN++LA RAE+LLF
Sbjct: 359 SEHEALELADKVESSMFTWRRKACLSHSKTSWNKVKDLMVDTDRSDKNYILAERAETLLF 418

Query: 390 YLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRN 449
            LKQRYPEL+QTSLDTCKIQ N+DVG+A+LESYSRVLEGLAFN VAW+EDVL  D+S+RN
Sbjct: 419 CLKQRYPELSQTSLDTCKIQYNRDVGKAILESYSRVLEGLAFNIVAWIEDVLHADKSMRN 478

Query: 450 QD 451
           Q+
Sbjct: 479 QN 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520430|ref|XP_003528865.1| PREDICTED: LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 2-like [Glycine max]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/480 (67%), Positives = 380/480 (79%), Gaps = 30/480 (6%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPI 60
           M+NS+N D+  D G +PSPSS+DQND + T         S +SFAY R+NSE S FS+PI
Sbjct: 1   MDNSSNFDDNSDVGYQPSPSSVDQNDHSITENVGYSPLFSGESFAYCRSNSEVSNFSEPI 60

Query: 61  DDNSSCSEPSPSNWLVSRSG--QPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERFA 118
           DDNS  SEPSPS W   + G  Q AL R  ++Q +  VD+  DD + ++ EL++M+ERF+
Sbjct: 61  DDNSFASEPSPSLWTPMKHGASQAALSRLGVKQHRHSVDEKSDDLDLLETELDMMRERFS 120

Query: 119 KLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSV 178
           KLLLGEDMSG GKGVCTAVTISN+ITNLYAT FGQNL+L PLKPEKKA+W+REM+CLLSV
Sbjct: 121 KLLLGEDMSGGGKGVCTAVTISNSITNLYATAFGQNLKLEPLKPEKKAMWRREMNCLLSV 180

Query: 179 CDYIVEFVSESQNLRDGREVE-------------------------DILESFQDTEFWYA 213
           CDYIVEF   +Q L DG  VE                         +IL+SFQDTEFWYA
Sbjct: 181 CDYIVEFSPTAQYLEDGTIVEMMTSKPRSDIYINLPALQKLDTMLIEILDSFQDTEFWYA 240

Query: 214 EQGSMSSNSTRS--GSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIH 271
           EQGS+S NSTRS  GSFRR IVQRK+EKWWLPVPCV  GGLS+KSRKHL  KRDCANQIH
Sbjct: 241 EQGSISGNSTRSRGGSFRR-IVQRKDEKWWLPVPCVHTGGLSDKSRKHLNEKRDCANQIH 299

Query: 272 KAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASE 331
           KAAMAINS+ LAEM+IP++YM+NLPKSG+  LGD IYR MY+ +KFSPDHLLDCL I+SE
Sbjct: 300 KAAMAINSSALAEMDIPETYMSNLPKSGRTSLGDTIYRCMYSADKFSPDHLLDCLKISSE 359

Query: 332 HEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYL 391
           HEALELAD VE+SM+T RRKAC+SHSK+SW+ VKDLM++TDRSDKN++LA RAE+LLF L
Sbjct: 360 HEALELADKVESSMFTXRRKACLSHSKTSWNKVKDLMADTDRSDKNYILAERAETLLFCL 419

Query: 392 KQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQD 451
           KQRYPEL+QTSLDTCKIQ NQDVG+A+LESYSRVLEGLAFN VAW+EDVL  D+S+RNQ+
Sbjct: 420 KQRYPELSQTSLDTCKIQYNQDVGKAILESYSRVLEGLAFNIVAWIEDVLLADKSMRNQN 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332688631|gb|AEE89668.1| RopGEF2 [Medicago truncatula]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 320/483 (66%), Positives = 373/483 (77%), Gaps = 47/483 (9%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPI 60
           M+NS+N D T          S DQND  S SETP YS  S DSFAY R+NSE S  S+ I
Sbjct: 1   MDNSSNFDST----------SSDQNDH-SISETPEYSPFSGDSFAYCRSNSEVSNLSETI 49

Query: 61  DDNSSCSEPSPSNWLVSRSGQPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERFAKL 120
           DDNS  S+PSPS W+  + G  AL R  M+Q+K  + +  DD + ++ ELE+MKERF+KL
Sbjct: 50  DDNSYASDPSPSPWMNVKHG-AALSRLGMKQRKHSLGEKSDDLDLLESELEMMKERFSKL 108

Query: 121 LLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCD 180
           LLGEDMSG GKGVCTAVTISN+ITNLYATVFGQNL+L PLKPEKKA+WKREM+CL+SVCD
Sbjct: 109 LLGEDMSGGGKGVCTAVTISNSITNLYATVFGQNLKLEPLKPEKKAMWKREMNCLMSVCD 168

Query: 181 YIVEFVSESQNLRDGREVE-------------------------DILESFQDTEFWYAEQ 215
           YIVEF   +Q L DG  VE                         +I +SFQDTEFWYAEQ
Sbjct: 169 YIVEFAPTAQYLDDGTIVEMMTSRPRADIYINLPALQKLDTMLIEIFDSFQDTEFWYAEQ 228

Query: 216 GSMSSNSTRS---------GSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDC 266
           GSMS NS RS         GSFR +I QRK+EKWWLPVPCV  GGLS+KSRKHL  KRDC
Sbjct: 229 GSMSGNSNRSSHSNAGSKAGSFR-IIAQRKDEKWWLPVPCVHTGGLSDKSRKHLIEKRDC 287

Query: 267 ANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCL 326
           ANQIHKAAMAINS++LAEM+IP++YMANLPKSG++ LGD IYRYM++ +KFSP +LLDCL
Sbjct: 288 ANQIHKAAMAINSSVLAEMDIPETYMANLPKSGRSSLGDTIYRYMHSGDKFSPGNLLDCL 347

Query: 327 SIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAES 386
            I +EHEALELAD VE+SMYTWRRK+C+SHSKSSW+ VK+LM+ETD SDKN+LLA RAE+
Sbjct: 348 KIRTEHEALELADRVESSMYTWRRKSCLSHSKSSWNKVKELMAETDHSDKNYLLAERAET 407

Query: 387 LLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRS 446
           LLF+LKQRYPEL+QTSLDTCKIQ NQDVG+AVLESYSRVLEGLAFN VAW+EDVL  D+S
Sbjct: 408 LLFFLKQRYPELSQTSLDTCKIQYNQDVGKAVLESYSRVLEGLAFNIVAWIEDVLCADKS 467

Query: 447 VRN 449
           +RN
Sbjct: 468 MRN 470

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810135|ref|XP_002872951.1| At4g00460 [Arabidopsis lyrata subsp. lyrata] gi|297318788|gb|EFH49210.1| At4g00460 [Arabidopsis lyrata subsp. lyrata]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 317/482 (65%), Positives = 372/482 (77%), Gaps = 37/482 (7%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSE-TSAFSDP 59
           MEN +N DE  D G   SP SIDQNDQ S +ETPVYSTMS DSF Y RT SE TS FSD 
Sbjct: 1   MENLSNPDENDDVGYHQSPRSIDQNDQ-SAAETPVYSTMSIDSFVYPRTCSESTSGFSDQ 59

Query: 60  IDD-NSSCSEPSPSNW--LVSRSGQPALGRPEMRQQKTVVDKNLDDQESMDLELELMKER 116
           ID+ NS CSE SP NW  L        L   EM+      +++L  QE  + ELE MKER
Sbjct: 60  IDETNSFCSEASPCNWPVLTESKSSKCLSGLEMQS-----NESLAVQEISEPELETMKER 114

Query: 117 FAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLL 176
           FAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRL PL+ EK+A+WKREM+CLL
Sbjct: 115 FAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLETEKRAMWKREMNCLL 174

Query: 177 SVCDYIVEFVSESQNLRDGREVE-------------------------DILESFQDTEFW 211
           SVCDYIVEF+   QNL +G  VE                         + L+SFQ+TEFW
Sbjct: 175 SVCDYIVEFIPRCQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALDSFQNTEFW 234

Query: 212 YAEQGSMSSNSTRS--GSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQ 269
           YAE+GS+S  S RS  GSFR+VIVQRKEEKWWLPVP VPP GLS+K+RK L++KR+  NQ
Sbjct: 235 YAEEGSLSMKSARSSTGSFRKVIVQRKEEKWWLPVPLVPPEGLSDKARKQLKNKRESTNQ 294

Query: 270 IHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIA 329
           IHKAAMAINS+IL+EMEIP+SYM  LPK GK+ +GD IYRYM  + +F P+ LLDCL+IA
Sbjct: 295 IHKAAMAINSSILSEMEIPESYMTTLPKCGKSSVGDSIYRYMSGSGRFFPEQLLDCLNIA 354

Query: 330 SEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLF 389
           SEHEA++LAD VEASMYTWRRKAC+S+SKSSW+MVKDLMS T+R+DKN+++A RAE+LLF
Sbjct: 355 SEHEAVQLADRVEASMYTWRRKACLSNSKSSWNMVKDLMSNTERTDKNYVMAERAETLLF 414

Query: 390 YLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRN 449
            LKQRYPEL+QTSLD CKIQ N+DVG+AVLESYSRVLEGLAFN VAW++DVL+VD+++R 
Sbjct: 415 CLKQRYPELSQTSLDICKIQYNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYVDKTMRG 474

Query: 450 QD 451
            +
Sbjct: 475 SE 476

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441640|ref|XP_004138590.1| PREDICTED: rop guanine nucleotide exchange factor 2-like [Cucumis sativus] gi|449516201|ref|XP_004165136.1| PREDICTED: rop guanine nucleotide exchange factor 2-like [Cucumis sativus]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 321/479 (67%), Positives = 375/479 (78%), Gaps = 39/479 (8%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPI 60
           M+  + SDE +  G RPS SS+D ND ++ S+T   S  S  SF+Y RT+S+ SAFSDP 
Sbjct: 1   MDKFSISDENFHLGFRPSSSSMDLNDHSTISDTSGQSPASGYSFSYCRTSSDASAFSDPT 60

Query: 61  -DDNSSCSEPSPSNWLVSRSGQPALGRPEMRQQKTVVDKNLDDQESMDLELELMKERFAK 119
            DD S C+EPSP+           LGR   R+ K  V    DDQ++MD E+E+MKERFAK
Sbjct: 61  TDDGSFCTEPSPA----------ILGRQCTRKYKHAVGDKADDQDAMDSEMEMMKERFAK 110

Query: 120 LLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVC 179
           LLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNL+L PL PEKKA+WKREM CLLSVC
Sbjct: 111 LLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLKLEPLPPEKKAMWKREMSCLLSVC 170

Query: 180 DYIVEFVSESQNLRDGREVE-------------------------DILESFQDTEFWYAE 214
           DYIVEF + SQ L DG  +E                         DIL+SFQDTEFWYAE
Sbjct: 171 DYIVEFFTLSQTLEDGTSLEVLNSRQRSDICLNLPALQKLDMMLLDILDSFQDTEFWYAE 230

Query: 215 QGSMSSNSTRSGS--FRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHK 272
           +GSMSSNS RS S  FRR+ +Q KEEKWWLPVPC+P  GLSE +RKHLR+KR+CANQIHK
Sbjct: 231 KGSMSSNSNRSRSGSFRRLSLQ-KEEKWWLPVPCIPSCGLSENARKHLRNKRECANQIHK 289

Query: 273 AAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEH 332
           AAMAINSTILAEM+IP+S++  LPKSGKA +GD IYRYMY+ +KFSP+HLLDCL+I SEH
Sbjct: 290 AAMAINSTILAEMDIPESFIDTLPKSGKASIGDTIYRYMYSADKFSPEHLLDCLNIGSEH 349

Query: 333 EALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYLK 392
           +ALELAD +EASMYTWRRKAC+SHSKSSW++VKDLM+ET++SDKN +LA RAE+LL  LK
Sbjct: 350 DALELADRIEASMYTWRRKACLSHSKSSWELVKDLMAETEKSDKNTILAERAETLLLSLK 409

Query: 393 QRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQD 451
           QR+PEL+QT+LDT KIQ N+DVGQAVLESYSRVLEGLAFN VAW+EDVLF DRS+RNQD
Sbjct: 410 QRFPELSQTTLDTSKIQYNRDVGQAVLESYSRVLEGLAFNIVAWIEDVLFSDRSIRNQD 468

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223455|ref|NP_171676.1| Rop guanine nucleotide exchange factor 2 [Arabidopsis thaliana] gi|229564283|sp|Q9LQ89.2|ROGF2_ARATH RecName: Full=Rop guanine nucleotide exchange factor 2; Short=RopGEF2 gi|332189203|gb|AEE27324.1| Rop guanine nucleotide exchange factor 2 [Arabidopsis thaliana]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 317/488 (64%), Positives = 372/488 (76%), Gaps = 40/488 (8%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSETSA--FSD 58
           MEN  N +E  D G   SP  ID ND  S SETPVYSTMS DSFAYHRT SETS   FSD
Sbjct: 1   MENLPNHEENDDVGYHQSPGPIDPNDH-SASETPVYSTMSTDSFAYHRTCSETSGGGFSD 59

Query: 59  PIDDNSS-CSEPSPSNWLV-------SRSGQPALGRPEMRQQKTVVDKNLDDQESMDLEL 110
            ID+ SS C+E SPS+W V       + S  P +   +++  +   D++L  QE  + EL
Sbjct: 60  QIDETSSFCTEASPSDWPVLTESNNSASSNFPTVF--DLKHNQIETDEHLAVQEISEPEL 117

Query: 111 ELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKR 170
           E MKERF+KLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRL PL+ E+K  WKR
Sbjct: 118 ETMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLEIEQKTTWKR 177

Query: 171 EMDCLLSVCDYIVEFVSESQNLRDGREVE-------------------------DILESF 205
           EM+CLLSVCDYI EF+ +SQNL +G  VE                         + L+SF
Sbjct: 178 EMNCLLSVCDYIFEFIPKSQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALDSF 237

Query: 206 QDTEFWYAEQGSMSSNSTRS--GSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHK 263
           Q TEFWYAE+GS+S  STRS  GSFR+VIVQRKEEKWWLP+P VP  GLSEK+RK L+ K
Sbjct: 238 QKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKARKQLKSK 297

Query: 264 RDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLL 323
           R+  NQIHKAAMAINS+IL EM+IPDSYMA LPKSGKA  GD IYR+M ++ +FSP+ LL
Sbjct: 298 RESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGRFSPEKLL 357

Query: 324 DCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAAR 383
           D L I SEHEAL+LAD VEASMYTWRRKAC+++SKSSW+MVKDLMS T+RSDKN++LA R
Sbjct: 358 DRLKIVSEHEALQLADRVEASMYTWRRKACLNNSKSSWNMVKDLMSITERSDKNYVLAER 417

Query: 384 AESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFV 443
           AESLLF LKQRYPEL+QTSLD CKI CN+DVG+AVLESYSRVLEGLAFN VAW++DVL+V
Sbjct: 418 AESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYV 477

Query: 444 DRSVRNQD 451
           D+++R ++
Sbjct: 478 DKTMRGEE 485

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186511392|ref|NP_001118903.1| RHO guanyl-nucleotide exchange factor 3 [Arabidopsis thaliana] gi|134031902|gb|ABO45688.1| At4g00460 [Arabidopsis thaliana] gi|332656485|gb|AEE81885.1| RHO guanyl-nucleotide exchange factor 3 [Arabidopsis thaliana]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 313/482 (64%), Positives = 369/482 (76%), Gaps = 40/482 (8%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQTSTSETPVYSTMSADSFAYHRTNSET-SAFSDP 59
           MEN +N DE  D     SP SIDQNDQ++  ETPVYSTMS DSF Y RT SET S FSD 
Sbjct: 1   MENLSNPDENDDHQ---SPRSIDQNDQSAV-ETPVYSTMSIDSFVYPRTCSETTSGFSDQ 56

Query: 60  IDD-NSSCSEPSPSNW--LVSRSGQPALGRPEMRQQKTVVDKNLDDQESMDLELELMKER 116
           ID+ NS CSE SP NW  L        L   EM+  + +V      QE  + ELE MKER
Sbjct: 57  IDETNSFCSEASPCNWPVLTESKSSKCLSGLEMQSNECLVV-----QEISEPELETMKER 111

Query: 117 FAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLL 176
           FAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRL PL+ EK+ALWKREM+CLL
Sbjct: 112 FAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLEPLETEKRALWKREMNCLL 171

Query: 177 SVCDYIVEFVSESQNLRDGREVE-------------------------DILESFQDTEFW 211
           SVCDYIVEF+   QNL +G  VE                         + L+SFQ+TEFW
Sbjct: 172 SVCDYIVEFIPRCQNLSNGATVEVMESRPRADIYINLPALRKLDSMLMEALDSFQNTEFW 231

Query: 212 YAEQGSMSSNSTRS--GSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQ 269
           YAE+GS+S  S RS  GSFR+VIVQRKEEKWWLPVP VP  GLS+K+RK L++KR+  NQ
Sbjct: 232 YAEEGSLSMKSARSSTGSFRKVIVQRKEEKWWLPVPLVPSEGLSDKARKQLKNKRESTNQ 291

Query: 270 IHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIA 329
           IHKAAMAINS+IL+EMEIPDSYM  LPK GK+ +GD IYRYM  + +F P+ LLDCL+I+
Sbjct: 292 IHKAAMAINSSILSEMEIPDSYMTTLPKCGKSSVGDSIYRYMSGSGRFFPEQLLDCLNIS 351

Query: 330 SEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLF 389
           SEHEA++LAD VEASMYTWRRK+C+S+SK+SW+MVKDLMS T+R+DKN+++A RAE+LLF
Sbjct: 352 SEHEAVQLADRVEASMYTWRRKSCLSNSKNSWNMVKDLMSTTERTDKNYVMAERAETLLF 411

Query: 390 YLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRN 449
            LKQRYPEL+QTSLD CKIQ N+DVG+AVLESYSRVLEGLAFN VAW++DVL+VD+++R 
Sbjct: 412 CLKQRYPELSQTSLDICKIQYNKDVGKAVLESYSRVLEGLAFNIVAWIDDVLYVDKTMRG 471

Query: 450 QD 451
            +
Sbjct: 472 SE 473

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454240|ref|XP_002274806.1| PREDICTED: rop guanine nucleotide exchange factor 2-like [Vitis vinifera]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 303/489 (61%), Positives = 369/489 (75%), Gaps = 45/489 (9%)

Query: 1   MENSTNSDETYDRGCRPSPSSIDQNDQ-TSTSETPVY------STMSADSFAYHRTNSET 53
           M  S++ DE +D G R  P ++D  D+ T+ S TP        ST SADS +Y RT S++
Sbjct: 1   MRRSSSRDENHDLGYR-LPYTVDHFDRSTAHSSTPSARSTAHSSTPSADSISYMRTYSQS 59

Query: 54  SAFSDPIDDNSSCSEPSPSN-WLVSR--------SGQPALGRPEMRQQKTVVDKNLDDQE 104
           S FSD  +DNSS S  + ++ W V+R          Q  L   EM+Q K  +D   DD +
Sbjct: 60  SNFSDRTEDNSSYSYEASASAWPVARIETQTETPHKQAVLTGLEMKQHKHDLDPKYDD-D 118

Query: 105 SMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEK 164
           ++D ELELMKERF+KLLLGEDMSGSGKGVCTAVTISNAITNLYAT+FGQN +L PL PEK
Sbjct: 119 ALDSELELMKERFSKLLLGEDMSGSGKGVCTAVTISNAITNLYATIFGQNQKLEPLSPEK 178

Query: 165 KALWKREMDCLLSVCDYIVEFVSESQNLRDGREVE------------------------- 199
           K++WKREM+CLL+VCDY+VEF    Q L +G  VE                         
Sbjct: 179 KSMWKREMNCLLAVCDYMVEFFPSLQTLPNGTSVEVMASRPRSDIHINLPALQKLDTMLQ 238

Query: 200 DILESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKH 259
           +IL+SF++TEFWYAEQG + S +TR+GSFR +I QR +EKWWLPVPC+P GGLSEK+RK 
Sbjct: 239 EILDSFKETEFWYAEQGKLVS-ATRAGSFR-LITQRPDEKWWLPVPCIPRGGLSEKARKD 296

Query: 260 LRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSP 319
           L+H RDCANQIHKAAM+INS++LAEM+IPDSY+A LPKSG+A LGD IYR+M T++KFSP
Sbjct: 297 LKHTRDCANQIHKAAMSINSSLLAEMKIPDSYIAALPKSGRAGLGDAIYRFMNTSDKFSP 356

Query: 320 DHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHL 379
           D L+D L I+SEHEALELAD VEASMYTWRRKAC++HSKSSWDMVK L+SET+R+DKN++
Sbjct: 357 DQLMDYLHISSEHEALELADRVEASMYTWRRKACVAHSKSSWDMVKQLISETERTDKNYV 416

Query: 380 LAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVED 439
           LA RAESLLF LKQRYPEL+QTSLD CKIQ N+DVGQA+LESYSRVLE LAF+ VAW+ED
Sbjct: 417 LAERAESLLFCLKQRYPELSQTSLDACKIQYNKDVGQAILESYSRVLESLAFSIVAWIED 476

Query: 440 VLFVDRSVR 448
           VL  DR++R
Sbjct: 477 VLHEDRNMR 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2198220	485	ROPGEF2 "ROP (rho of plants) g	0.557	0.519	0.696	4.9e-155
TAIR|locus:2126071	473	ROPGEF3 "ROP (rho of plants) g	0.557	0.532	0.673	1.9e-153
TAIR|locus:2050699	463	ROPGEF4 "ROP (rho of plants) g	0.949	0.926	0.561	1.5e-124
TAIR|locus:2185153	546	ROPGEF7 "ROP (rho of plants) g	0.550	0.456	0.550	3.6e-101
TAIR|locus:2153684	611	ROPGEF5 "ROP (rho of plants) g	0.546	0.404	0.522	2.9e-97
TAIR|locus:2121828	548	ROPGEF1 "ROP (rho of plants) g	0.539	0.445	0.523	2.6e-96
TAIR|locus:2078976	579	ROPGEF6 "ROP (rho of plants) g	0.528	0.412	0.501	1e-90
TAIR|locus:2091742	523	ROPGEF8 "ROP (rho of plants) g	0.506	0.437	0.455	1.7e-78
TAIR|locus:2119320	517	ROPGEF9 "ROP (rho of plants) g	0.519	0.454	0.420	5.9e-78
TAIR|locus:2017844	515	ROPGEF12 "ROP (rho of plants)	0.920	0.807	0.394	4e-74

TAIR|locus:2198220 ROPGEF2 "ROP (rho of plants) guanine nucleotide exchange factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 927 (331.4 bits), Expect = 4.9e-155, Sum P(2) = 4.9e-155
 Identities = 177/254 (69%), Positives = 210/254 (82%)

Query:   200 DILESFQDTEFWYAEQGXXXXXXXXXXXXXX--VIVQRKEEKWWLPVPCVPPGGLSEKSR 257
             + L+SFQ TEFWYAE+G                VIVQRKEEKWWLP+P VP  GLSEK+R
Sbjct:   232 EALDSFQKTEFWYAEEGSLSMKSTRSATGSFRKVIVQRKEEKWWLPIPLVPLQGLSEKAR 291

Query:   258 KHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKF 317
             K L+ KR+  NQIHKAAMAINS+IL EM+IPDSYMA LPKSGKA  GD IYR+M ++ +F
Sbjct:   292 KQLKSKRESTNQIHKAAMAINSSILGEMDIPDSYMATLPKSGKASTGDAIYRHMTSSGRF 351

Query:   318 SPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKN 377
             SP+ LLD L I SEHEAL+LAD VEASMYTWRRKAC+++SKSSW+MVKDLMS T+RSDKN
Sbjct:   352 SPEKLLDRLKIVSEHEALQLADRVEASMYTWRRKACLNNSKSSWNMVKDLMSITERSDKN 411

Query:   378 HLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWV 437
             ++LA RAESLLF LKQRYPEL+QTSLD CKI CN+DVG+AVLESYSRVLEGLAFN VAW+
Sbjct:   412 YVLAERAESLLFCLKQRYPELSQTSLDICKIHCNKDVGKAVLESYSRVLEGLAFNIVAWI 471

Query:   438 EDVLFVDRSVRNQD 451
             +DVL+VD+++R ++
Sbjct:   472 DDVLYVDKTMRGEE 485

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126071 ROPGEF3 "ROP (rho of plants) guanine nucleotide exchange factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 916 (327.5 bits), Expect = 1.9e-153, Sum P(2) = 1.9e-153
 Identities = 171/254 (67%), Positives = 212/254 (83%)

Query:   200 DILESFQDTEFWYAEQGXXXXXXXXXXXXXX--VIVQRKEEKWWLPVPCVPPGGLSEKSR 257
             + L+SFQ+TEFWYAE+G                VIVQRKEEKWWLPVP VP  GLS+K+R
Sbjct:   220 EALDSFQNTEFWYAEEGSLSMKSARSSTGSFRKVIVQRKEEKWWLPVPLVPSEGLSDKAR 279

Query:   258 KHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKF 317
             K L++KR+  NQIHKAAMAINS+IL+EMEIPDSYM  LPK GK+ +GD IYRYM  + +F
Sbjct:   280 KQLKNKRESTNQIHKAAMAINSSILSEMEIPDSYMTTLPKCGKSSVGDSIYRYMSGSGRF 339

Query:   318 SPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKN 377
              P+ LLDCL+I+SEHEA++LAD VEASMYTWRRK+C+S+SK+SW+MVKDLMS T+R+DKN
Sbjct:   340 FPEQLLDCLNISSEHEAVQLADRVEASMYTWRRKSCLSNSKNSWNMVKDLMSTTERTDKN 399

Query:   378 HLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWV 437
             +++A RAE+LLF LKQRYPEL+QTSLD CKIQ N+DVG+AVLESYSRVLEGLAFN VAW+
Sbjct:   400 YVMAERAETLLFCLKQRYPELSQTSLDICKIQYNKDVGKAVLESYSRVLEGLAFNIVAWI 459

Query:   438 EDVLFVDRSVRNQD 451
             +DVL+VD+++R  +
Sbjct:   460 DDVLYVDKTMRGSE 473

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2050699 ROPGEF4 "ROP (rho of plants) guanine nucleotide exchange factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
 Identities = 261/465 (56%), Positives = 322/465 (69%)

Query:    18 SPSSIDQNDQTSTSE--TPVYSTMSADSFAYHRTNSETSAFSDPIDDNSSCSEPSPSNWL 75
             S S+ DQN+ T TS   +P   T S  S   HR + + S ++ P + N+        +  
Sbjct:     3 SSSNSDQNEGTPTSSVSSPYRRTYSDISGLSHRFDVQ-SFYNRPSNTNAVVLSGHEED-- 59

Query:    76 VSRSGQPALGRP--EMRQQKTVVDKNLDDQESMDLELELMKERFAKLLLGEDMSGSGKGV 133
             VS   +        ++       D ++D  E  D ELE+M+ERFAKLLLGEDMSGSGKGV
Sbjct:    60 VSEDAEEPKDDVVNDVHGDGDEEDSDIDSAE--DAELEMMRERFAKLLLGEDMSGSGKGV 117

Query:   134 CTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVSES---- 189
             CTAVT+SN+ITNLYATVFGQ+LRL PL  EKK LWKREM+C +S+CDYIVE +  S    
Sbjct:   118 CTAVTVSNSITNLYATVFGQSLRLQPLSTEKKDLWKREMNCFMSICDYIVEVIPRSLGTN 177

Query:   190 -----QNLRDG--------REVE----DILESFQDTEFWYAEQGXXXXXXXX----XXXX 228
                    LR          R+++    +IL+SF + EFWY E+G                
Sbjct:   178 VEITETKLRSDILMSLPALRKLDNMLMEILDSFTENEFWYVERGSSSMNSGGGGRDSGTF 237

Query:   229 XXVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIP 288
               V+VQRK+EKWWLPVPCVP  GLSE+ RKHLRHKRDCA+QIHKAA+AIN + L +M+IP
Sbjct:   238 RKVVVQRKDEKWWLPVPCVPAEGLSEEERKHLRHKRDCASQIHKAALAINDSTLNDMDIP 297

Query:   289 DSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTW 348
             DSY+  LPKSGKA +GD IY+ + T EKF PD LLD L I SEHEALELAD VEAS+ TW
Sbjct:   298 DSYLTTLPKSGKASVGDVIYKQLCTAEKFYPDQLLDILKITSEHEALELADKVEASLVTW 357

Query:   349 RRKAC-MSHSKSSWDMVKDLMSETDR-SDKNHLLAARAESLLFYLKQRYPELAQTSLDTC 406
             RRK   ++HSKSSWDM+KD+  + DR +DKNH+LAARA SLLF LKQRYPEL+QTSLD C
Sbjct:   358 RRKTGGLTHSKSSWDMMKDISGDADRGNDKNHILAARARSLLFCLKQRYPELSQTSLDIC 417

Query:   407 KIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQD 451
             KIQ N+DVG+AVLESYSRVLEGLA+N V+W++DVL+VDR+VRN+D
Sbjct:   418 KIQFNRDVGKAVLESYSRVLEGLAYNVVSWIDDVLYVDRTVRNRD 462

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0048767 "root hair elongation" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

TAIR|locus:2185153 ROPGEF7 "ROP (rho of plants) guanine nucleotide exchange factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 729 (261.7 bits), Expect = 3.6e-101, Sum P(2) = 3.6e-101
 Identities = 142/258 (55%), Positives = 193/258 (74%)

Query:   200 DILESFQDTEFWYAEQGXXXXXXXXXXXXXX-VIVQRKEEKWWLPVPCVPPGGLSEKSRK 258
             +IL+SF++TEFWY +QG                  QR+E+KWWLPVP V PGGL E SRK
Sbjct:   186 EILDSFEETEFWYVDQGIMAHESAADGSSSFRKSFQRQEDKWWLPVPRVSPGGLQENSRK 245

Query:   259 HLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFS 318
              L+HKRDC NQI KAAMAINS  LA+MEIP+SY+ +LP+ G++CLGD IYRY+ ++++FS
Sbjct:   246 QLQHKRDCTNQILKAAMAINSITLADMEIPESYLESLPRKGRSCLGDLIYRYI-SSDQFS 304

Query:   319 PDHLLDCLSIASEHEALELADHVEASMYTWRRKACM---SHSKSSWDMVKDLMSETDRSD 375
             P+ LLDCL ++SEH+A+E+A+ VE+S+Y W ++      +++K+SW+MVK+LM +   +D
Sbjct:   305 PECLLDCLDLSSEHQAIEIANRVESSIYLWHKRTNSKPATNTKTSWEMVKELMVD---AD 361

Query:   376 KNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVA 435
             K  L+A RAESLL  LKQR+P L QT+LD  KIQ N+D+G+++LESYSRVLE LAFN VA
Sbjct:   362 KLELMADRAESLLLSLKQRFPGLPQTALDMSKIQYNKDIGKSILESYSRVLESLAFNIVA 421

Query:   436 WVEDVLFVDRSVRNQ-DQ 452
              ++D+LFVD   R+  DQ
Sbjct:   422 RIDDLLFVDDLTRHSSDQ 439

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2153684 ROPGEF5 "ROP (rho of plants) guanine nucleotide exchange factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 673 (242.0 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
 Identities = 137/262 (52%), Positives = 182/262 (69%)

Query:   200 DILESFQDTEFWYAEQGXXXXXXXXXXXXXXVIVQRKEEKWWLPVPCVPPGGLSEKSRKH 259
             DIL SF+ TEFWY +QG               I QR+EEKWWLPVP + P GL+E++R  
Sbjct:   218 DILASFKKTEFWYVDQGIVASENDGSASFRRKI-QRQEEKWWLPVPRLAPNGLTEEARTE 276

Query:   260 LRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSP 319
             L HKR+CA QI KAAMAINS  L EM++P SY+  LPK+G++CLGD IYRY+ T++KFS 
Sbjct:   277 LNHKRECATQILKAAMAINSLALTEMDVPKSYLETLPKNGRSCLGDVIYRYV-TSDKFSA 335

Query:   320 DHLLDCLSIASEHEALELADHVEASMYTWRR----KACMSHSKSS------WDMVKDLMS 369
             + LLDCL ++SEH AL++A+ VEAS+Y WRR    K  ++++ SS      W+MVK+LM+
Sbjct:   336 ESLLDCLDLSSEHIALDIANRVEASIYVWRRRVQTKLGVNNNTSSTTPKLTWEMVKELMA 395

Query:   370 ETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGL 429
                  DK  LL  R+E+LL  LKQR+P L QTSLD  KIQ N+D+G+++LESYSR LE L
Sbjct:   396 A---GDKRGLLVERSETLLRCLKQRFPSLTQTSLDISKIQWNKDIGKSILESYSRALESL 452

Query:   430 AFNTVAWVEDVLFVDRSVRNQD 451
             A N +A ++D+L+VD   +  D
Sbjct:   453 ASNIIARIDDLLYVDDLTKQSD 474

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2121828 ROPGEF1 "ROP (rho of plants) guanine nucleotide exchange factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 658 (236.7 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
 Identities = 134/256 (52%), Positives = 180/256 (70%)

Query:   200 DILESFQDTEFWYAEQGXXXXXXXXXXXXXXVIVQRKEEKWWLPVPCVPPGGLSEKSRKH 259
             D+L++F DTEFWY ++G                V R+E+KWWLP P VPP GLSE++RK 
Sbjct:   206 DMLDAFSDTEFWYTDRGIVLGDCDKDSYNSPASV-RQEDKWWLPCPKVPPNGLSEEARKK 264

Query:   260 LRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSP 319
             L+  RD ANQI KAA+AINS +LAEMEIPD Y+  LPKSGK CLG+ IY+Y+ T  KFSP
Sbjct:   265 LQQCRDFANQILKAALAINSGVLAEMEIPDPYLETLPKSGKECLGEIIYQYL-TANKFSP 323

Query:   320 DHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSK------SSWD-MVKDLMSETD 372
             + LLDCL ++SEH+ LE+A+ +EA+++ WR+K    H K      SSW   VK L+++ +
Sbjct:   324 ECLLDCLDLSSEHQTLEIANRIEAAVHVWRQKNGRRHKKQAKLKLSSWGGKVKGLVNDNE 383

Query:   373 RSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFN 432
             R+D    L  RAE+LL  L+ R+P L QT+LD  KIQ N+DVGQ++LESYSRV+E +AFN
Sbjct:   384 RND---FLVQRAETLLQSLRIRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVMESMAFN 440

Query:   433 TVAWVEDVLFVDRSVR 448
               A ++DVL+VD ++R
Sbjct:   441 ITARIDDVLYVDDAMR 456

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0009860 "pollen tube growth" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2078976 ROPGEF6 "ROP (rho of plants) guanine nucleotide exchange factor 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 127/253 (50%), Positives = 171/253 (67%)

Query:   200 DILESFQDTEFWYAEQGXXXXXXXXXXXXXXVIVQRKEEKWWLPVPCVPPGGLSEKSRKH 259
             +IL+SF +TEFWY +QG                 +   +KWWLP+P VP  GL+E++RK 
Sbjct:   223 EILDSFGETEFWYVDQGIVAAESARSNSF-----REDGDKWWLPLPRVPSDGLTEQTRKK 277

Query:   260 LRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSP 319
             L H R+  NQI KA M+INS  LAEME+P SY+  LPK+G++CLGDF+YR + T++ FS 
Sbjct:   278 LDHTREFTNQILKACMSINSIALAEMEVPQSYLEALPKNGRSCLGDFLYRNI-TSDNFSA 336

Query:   320 DHLLDCLSIASEHEALELADHVEASMYTWRRKACMSH------SKSS-WDM-VKDLMSET 371
             DHLL+ + ++SE   +E+A+ VEASMY WRR+A   H      S S+ W M VK++M   
Sbjct:   337 DHLLESIDLSSELAVVEMANRVEASMYVWRRRAHSRHLISLYRSTSTRWGMIVKEMMMHQ 396

Query:   372 DRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAF 431
                DK  + A RAESLL  LKQR+P L QT+LDT KIQ N+DVG+++LESYSRVLE LA+
Sbjct:   397 TDGDKREIFAERAESLLIRLKQRFPGLRQTALDTSKIQYNKDVGKSILESYSRVLESLAY 456

Query:   432 NTVAWVEDVLFVD 444
             +    +E+VLF+D
Sbjct:   457 SIGVRIEEVLFMD 469

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2091742 ROPGEF8 "ROP (rho of plants) guanine nucleotide exchange factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
 Identities = 112/246 (45%), Positives = 155/246 (63%)

Query:   200 DILESFQD-TEFWYAEQGXXXXXXXXXXXXXXVIVQRKEEKWWLPVPCVPPGGLSEKSRK 258
             D L++F+   EFWY  +                   R  +KWWLP   VPPGGLSE SR+
Sbjct:   201 DTLDNFRGHNEFWYVSRDSEEGQQARN--------DRTNDKWWLPPVKVPPGGLSEPSRR 252

Query:   259 HLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFS 318
              L  ++D   Q+ KAAMAIN+ +L+EMEIP+SY+ +LPK+G+A LGD IY+ + T E F 
Sbjct:   253 MLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSI-TEEWFD 311

Query:   319 PDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNH 378
             P+  L  L +++EH+ L+L + +EAS+  W+RK     +KSSW     L       +K  
Sbjct:   312 PEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSL-------EKRE 364

Query:   379 LLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVE 438
             L   RAE++L  LKQ++P L Q+SLD  KIQ N+DVGQAVLESYSR+LE LA+  ++ +E
Sbjct:   365 LFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIE 424

Query:   439 DVLFVD 444
             DVL+ D
Sbjct:   425 DVLYTD 430

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2119320 ROPGEF9 "ROP (rho of plants) guanine nucleotide exchange factor 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 5.9e-78, Sum P(2) = 5.9e-78
 Identities = 106/252 (42%), Positives = 156/252 (61%)

Query:   200 DILESFQD-TEFWYAEQGXXXXXXXXXXXXXXVIVQRKEEKWWLPVPCVPPGGLSEKSRK 258
             D L++F+   EFWY  +                  +R ++KWWLP   VPP GLSE +R+
Sbjct:   190 DTLDNFRGHNEFWYVSRDSEEGKQARN--------ERTKDKWWLPPVKVPPNGLSESARR 241

Query:   259 HLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFS 318
              L  ++D  +Q+ KAAMAIN+ +L+EM IPDSY+ +LPK+G+  LGD +Y+ + T E F 
Sbjct:   242 MLHFQKDSVSQVQKAAMAINAQVLSEMAIPDSYIESLPKNGRVSLGDSLYKSI-TEEWFD 300

Query:   319 PDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNH 378
             P+  L  L +++EH+ L++ + +EAS+  W+RK  +  +KSSW     L       +K  
Sbjct:   301 PEQFLSTLDLSTEHKVLDVKNRIEASIVIWKRKLHLKDNKSSWGSAVSL-------EKRE 353

Query:   379 LLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVE 438
             L   RAE++L  LKQ++P L Q+SLD  KIQ N+DVG AVLESYSR+LE L +  ++ ++
Sbjct:   354 LFEERAETILVLLKQKFPGLPQSSLDISKIQYNKDVGHAVLESYSRILESLGYTEMSRID 413

Query:   439 DVLFVDRSVRNQ 450
             DVL+ D   R Q
Sbjct:   414 DVLYADSLARKQ 425

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

TAIR|locus:2017844 ROPGEF12 "ROP (rho of plants) guanine nucleotide exchange factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 174/441 (39%), Positives = 257/441 (58%)

Query:    23 DQNDQTSTSETPVYSTMSADSFAYHRTNSETSAFSDPIDDNSSCSEPSPSNWLVSRSGQP 82
             +Q  +T  S    +   + D+ +  R N   S  +  +D+ ++ S  +    ++  S  P
Sbjct:     6 EQEQETYRSRLFNFKWRNNDNNSATRHNKSLSVETG-LDEAATGSHDAEPLTIIHPSQGP 64

Query:    83 ALGRPEMRQQKTVVDKNLDDQESMDL-ELELMKERFAKLLLGEDMSGSGKGVCTAVTISN 141
              L R    +           +E   L ++E MKERF+KLLLGED SG GKGV +A+ +SN
Sbjct:    65 PLSRSAADEAVLAALAASQARERQLLADMEQMKERFSKLLLGEDNSGGGKGVSSALALSN 124

Query:   142 AITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVEDI 201
             AITNL A+VFG+  RL P+  E++A W++E+D LLSV DY+VEF    Q  +DG  +E I
Sbjct:   125 AITNLAASVFGEQRRLEPMPAERRARWRKEIDWLLSVTDYVVEFAPSQQKNKDGTNME-I 183

Query:   202 LESFQDTEFWY---------------AEQGXXXXXXXXXXXXXXVIV-QRKEEKWWLPVP 245
             + + Q T+                   E                 +  +R +EKWW+P  
Sbjct:   184 MTTRQRTDLHMNIPALKKLDAMLIDCLENFKDQSEFSYISKDSPDLDGKRNDEKWWIPTV 243

Query:   246 CVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGD 305
              VPP GLSE SR+ L++++DC NQ+ KAAMAIN+ +L EMEIP+SY+ +LPK+G+A LGD
Sbjct:   244 KVPPDGLSEASRRFLQYQKDCVNQVLKAAMAINAQVLFEMEIPESYIDSLPKNGRASLGD 303

Query:   306 FIYRYMYTTEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVK 365
              +Y+ + T + F PD  L  + ++SEH+ ++L + +EAS+  W+RK     +KSS     
Sbjct:   304 QMYKNI-TVDFFDPDQFLSSMDMSSEHKIVDLKNRIEASIIIWKRKMVYKDNKSSAPWAS 362

Query:   366 DLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRV 425
              +  E     K  +   RAE++L  LKQRYP ++Q+SLD  KIQ N+DVGQAVLESYSR+
Sbjct:   363 GVSLE-----KREVFEERAETILLILKQRYPGISQSSLDISKIQFNEDVGQAVLESYSRI 417

Query:   426 LEGLAFNTVAWVEDVLFVDRS 446
             LE LA+  ++ ++DVL  DR+
Sbjct:   418 LESLAYTVLSRIDDVLEADRA 438

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009860 "pollen tube growth" evidence=IEP

GO:0090406 "pollen tube" evidence=IDA

GO:0080092 "regulation of pollen tube growth" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LQ89	ROGF2_ARATH	No assigned EC number	0.6495	0.9911	0.9237	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00140300 hypothetical protein (473 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	452
pfam03759	360	pfam03759, PRONE, PRONE (Plant-specific Rop nucleo	0.0

>gnl|CDD|217715 pfam03759, PRONE, PRONE (Plant-specific Rop nucleotide exchanger)

 Score =  573 bits (1479), Expect = 0.0
 Identities = 229/371 (61%), Positives = 272/371 (73%), Gaps = 38/371 (10%)

Query: 107 DLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKA 166
             E+ELMKERFAKLLLGEDMSG GKGV TA+ +SNAITNL ATVFG+  RL PL PEKKA
Sbjct: 2   PSEMELMKERFAKLLLGEDMSGGGKGVSTALALSNAITNLAATVFGELWRLEPLAPEKKA 61

Query: 167 LWKREMDCLLSVCDYIVEFVSESQNLRDGREVE-------------------------DI 201
           +W+REMD LLSV DYIVEFV   Q L DG  +E                         +I
Sbjct: 62  MWRREMDWLLSVTDYIVEFVPSKQTLPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLLEI 121

Query: 202 LESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSEKSRKHLR 261
           L+SF+DTEFWY +QGS+S       SFRR   QR+EEKWWLPVP VPPGGLSE SRK L+
Sbjct: 122 LDSFKDTEFWYVDQGSLS-------SFRR-KSQRQEEKWWLPVPKVPPGGLSESSRKKLQ 173

Query: 262 HKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDH 321
           HKRDC NQI KAAMAINS +LAEMEIP+SY+ +LPK+G+A LGD IYRY+ T+++FSPD 
Sbjct: 174 HKRDCVNQILKAAMAINSQVLAEMEIPESYIESLPKNGRASLGDAIYRYI-TSDQFSPDQ 232

Query: 322 LLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSW-DMVKDLMSETDRSDKNHLL 380
           LLDCL ++SEH+ALELA+ +EASMY WRRKA    SKSSW   VKDLM++    +K  LL
Sbjct: 233 LLDCLDLSSEHKALELANRIEASMYIWRRKAHTKDSKSSWGSAVKDLMADG---EKRELL 289

Query: 381 AARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDV 440
           A RAE+LL  LKQR+P L QTSLD  KIQ N+DVGQA+LESYSRVLE LAFN ++ ++DV
Sbjct: 290 AERAETLLLCLKQRFPGLPQTSLDISKIQYNKDVGQAILESYSRVLESLAFNIMSRIDDV 349

Query: 441 LFVDRSVRNQD 451
           L+ D   +  +
Sbjct: 350 LYADDLAKKSE 360

This is a functional guanine exchange factor (GEF) of plant Rho GTPase. Length = 360

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
PF03759	365	PRONE: PRONE (Plant-specific Rop nucleotide exchan	100.0
smart00546	43	CUE Domain that may be involved in binding ubiquit	81.66

>PF03759 PRONE: PRONE (Plant-specific Rop nucleotide exchanger); InterPro: IPR005512 In plants, the small GTP-binding proteins called Rops work as signalling switches that control growth, development and plant responses to various environmental stimuli

Probab=100.00  E-value=6.4e-186  Score=1352.86  Aligned_cols=338  Identities=68%  Similarity=1.095  Sum_probs=265.9

Q ss_pred             hHHHHHHHHHHHHhhhccCCCCCCCchhhHHHHHHHHHHHHHhhhhccccccCCChhHHHhhhhhccccccccCeeEEee
Q 041621          107 DLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVEFV  186 (452)
Q Consensus       107 ~se~E~MKErFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPl~~ekK~~WrREmdwLLSV~D~IVElv  186 (452)
                      .+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+||||||||||||||||||||
T Consensus         2 ~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AtvFGe~~rLEPl~~ekk~~WrrEm~wLLsv~d~iVE~v   81 (365)
T PF03759_consen    2 PSEVEMMKERFAKLLLGEDMSGGGKGVCTALAISNAITNLAATVFGELWRLEPLSPEKKAMWRREMDWLLSVTDYIVELV   81 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTTBTTSSS-S--HHHHHHHHHHHHHHHHHTT--SSS---HHHHHHHHHHHHHHHGGGGG-EEEE
T ss_pred             chHHHHHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHHHHHHhhhhhccCCCChHHHHHHHHhcceeecchhhhhhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccccCCCcchh-------------------------HhhhccCCCeeEeeeCCCCCCCCCCCCCcccccccccCcccc
Q 041621          187 SESQNLRDGREVE-------------------------DILESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWW  241 (452)
Q Consensus       187 Ps~Q~~~dG~~~E-------------------------e~LDsf~~tEFWYv~~g~~~~~~~~s~s~r~~~~~R~eeKWW  241 (452)
                      |++|++|||+++|                         |+||||+|||||||++|+++ .++.+++||+ ..+||++|||
T Consensus        82 Ps~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLie~LDsf~dtEFwYv~~g~~~-~~~~~~~~~~-~~~r~~~KWW  159 (365)
T PF03759_consen   82 PSKQTFPDGTTMEVMTTRPRSDLYMNLPALRKLDAMLIEILDSFKDTEFWYVDQGIVA-DSDSSSSFRR-SSQRQEEKWW  159 (365)
T ss_dssp             EEEEE-TTS-EEEEEEEEE-HHHHTHHHHHHHHHHHHHHHHHTTCS-SSEE--TT-------SHHHHT-------CCCTT
T ss_pred             cceeecCCCceEEEEecCccchhhcCcHHHHHHHHHHHHHHHhCCCCeeEEecCCccc-ccccCccccC-cccccCCccc
Confidence            9999999999999                         99999999999999999988 5666788887 9999999999


Q ss_pred             ccCCcCCCCCCCHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhcCCCchHHHhhccccCccchhHHHHHhhccCCCCChhh
Q 041621          242 LPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDH  321 (452)
Q Consensus       242 LP~p~VP~~GLSe~~RK~L~~qrd~~nQIlKAAmAIN~~vL~EMeIPe~y~esLPKnGrasLGD~iYr~i~t~e~Fspe~  321 (452)
                      ||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+| |+|+||||+
T Consensus       160 LP~p~VP~~GLse~~rK~L~~~rd~~~QilKAAmaIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~i-t~~~Fspe~  238 (365)
T PF03759_consen  160 LPVPRVPPNGLSEESRKWLQHQRDCVNQILKAAMAINSQVLAEMEIPESYLESLPKNGRASLGDSIYRYI-TSEQFSPEQ  238 (365)
T ss_dssp             S--EE--TT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHCS-SSHHHHHHHHHHHHC-TSSS--HHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhcccccHHHHHHHH-hccCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999 999999999


Q ss_pred             HhhhcCchhhhHHHhhhhhhHHHHHHHHHhhhccCCCcch-hhhhhhhcccCcchhHHHHHHHHHHHHHHHHhhCCCCCc
Q 041621          322 LLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSW-DMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPELAQ  400 (452)
Q Consensus       322 lL~~ldLssEH~aLe~anRvEAsi~iWrrK~~~~~~kssW-~~vk~l~~~~~~~dK~e~laeRAEtlL~~LKqRfPgLpQ  400 (452)
                      ||+||||||||+|||+|||||||||+||||++++++|+|| ++|||+|++.   |||++|++|||+||+|||||||||||
T Consensus       239 ll~~ldlssEH~~le~~NRvEAai~vWrrK~~~k~~ksSWg~~vkdl~~~~---dK~e~l~eRAEtlL~~LK~RfPgl~Q  315 (365)
T PF03759_consen  239 LLDCLDLSSEHKALELANRVEAAIYVWRRKICEKDSKSSWGSMVKDLMSDG---DKRELLAERAETLLLCLKQRFPGLPQ  315 (365)
T ss_dssp             HHHTS--SSHHHHHHHHHHHHHHHHHHCH---------------------H---HHHHHHHHHHHHHHHHHHHHSTT---
T ss_pred             HHHhcccccHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhcccccccc---hHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999999999999999999 5999999987   89999999999999999999999999


Q ss_pred             chhhhhhhhhchhhHHHHHHHHHHHHHHhHHHHHHhhhhHHhhchhhhcc
Q 041621          401 TSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQ  450 (452)
Q Consensus       401 T~LD~sKIQyNkDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~~~~~~  450 (452)
                      |+||++|||||||||||||||||||||||||||++|||||||+|+++++.
T Consensus       316 T~LD~~KIQyNkDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~~~~~~  365 (365)
T PF03759_consen  316 TSLDISKIQYNKDVGQAILESYSRVLESLAFNILSRIDDVLYADDLTKNS  365 (365)
T ss_dssp             -HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             hHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence            99999999999999999999999999999999999999999999999863

Rop proteins (Rho of plants, Rac-like and atRac in Arabidopsis thaliana (Mouse-ear cress)) belong to the Rho family of Ras-related GTP-binding proteins that turn on signalling pathways by switching from a GDP-bound inactive to a GTP-bound active conformation. Activation depends on guanine nucleotide exchange factors (GEFs) that catalyse the otherwise slow GDP dissociation for subsequent GTP binding. The plant-specific RopGEFs represent a unique family of exchange factor that display no homology to any known RhoGEFs from animals and fungi. They comprise a highly conserved catalytic domain termed PRONE (plant-specific Rop nucleotide exchanger) with exclusive substrate specificity for members of the Rop family. The PRONE domain has been shown to be necessary and sufficient to promote nucleotide release from Rop [, , ]. The PRONE domain can be divided into three highly conserved subdomains separated by two short stretches of variable amino acid residues [, ]. It is approximately 370 residues in length and displays an almost all alpha-helical structure except for a beta-turn that protrudes from the main body of the molecule. The overall structure of the PRONE domain can be divided into two subdomains, the first one including helices alpha1-5 and alpha13, the second alpha6-12 [].; GO: 0005089 Rho guanyl-nucleotide exchange factor activity; PDB: 2NTX_B 2NTY_B 2WBL_A.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=81.66  E-value=1.7  Score=31.32  Aligned_cols=34  Identities=21%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             HHHHHHHHhhCCCCCcchhhhhhhhhchhhHHHH
Q 041621          385 ESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAV  418 (452)
Q Consensus       385 EtlL~~LKqRfPgLpQT~LD~sKIQyNkDVG~aI  418 (452)
                      +..+..|++-||.++...+-.+=.++|.||..+|
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i   36 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATI   36 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHH
Confidence            3467789999999999999888888999998876

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	452
2nty_A	365	Rop4-Gdp-Prone8 Length = 365		5e-86
2ntx_A	365	Prone8 Length = 365		4e-76

>pdb|2NTY|A Chain A, Rop4-Gdp-Prone8 Length = 365

Iteration: 1
 Score =  314 bits (805), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/371 (45%), Positives = 233/371 (62%), Gaps = 50/371 (13%)
Query: 104 ESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPE 163
           E    ++E+MK+RFAKLLLGEDMSG GKGV +A+ +SNAITNL A++FG+  +L P+  +
Sbjct: 5   ERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQD 64
Query: 164 KKALWKREMDCLLSVCDYIVEFVSESQNLRDG---------------------REVE--- 199
           ++A WK+E+D LLSV D+IVEFV   Q  +DG                     R+++   
Sbjct: 65  RQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAML 124
Query: 200 -DILESFQD-TEFWY----AEQGXXXXXXXXXXXXXXVIVQRKEEKWWLPVPCVPPGGLS 253
            D L++F+   EFWY    +E+G                  R  +KWWLP   VPPGGLS
Sbjct: 125 IDTLDNFRGHNEFWYVSRDSEEGQQARN------------DRTNDKWWLPPVKVPPGGLS 172
Query: 254 EKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYT 313
           E SR+ L  ++D   Q+ KAAMAIN+ +L+EMEIP+SY+ +LPK+G+A LGD IY+ + T
Sbjct: 173 EPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSI-T 231
Query: 314 TEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDR 373
            E F P+  L  L +++EH+ L+L + +EAS+  W+RK     +KSSW     L      
Sbjct: 232 EEWFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSL------ 285
Query: 374 SDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNT 433
            +K  L   RAE++L  LKQ++P L Q+SLD  KIQ N+DVGQAVLESYSR+LE LA+  
Sbjct: 286 -EKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTV 344
Query: 434 VAWVEDVLFVD 444
           ++ +EDVL+ D
Sbjct: 345 MSRIEDVLYTD 355

>pdb|2NTX|A Chain A, Prone8 Length = 365

Iteration: 1
 Score =  281 bits (720), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 163/371 (43%), Positives = 224/371 (60%), Gaps = 50/371 (13%)
Query: 104 ESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPE 163
           E    + E  K+RFAKLLLGED SG GKGV +A+ +SNAITNL A++FG+  +L P   +
Sbjct: 5   ERQQADXEXXKDRFAKLLLGEDXSGGGKGVSSALALSNAITNLAASIFGEQTKLQPXPQD 64
Query: 164 KKALWKREMDCLLSVCDYIVEFVSESQNLRDG---------------------REVE--- 199
           ++A WK+E+D LLSV D+IVEFV   Q  +DG                     R+++   
Sbjct: 65  RQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIXVTRQRGDLLXNIPALRKLDAXL 124
Query: 200 -DILESFQD-TEFWY----AEQGXXXXXXXXXXXXXXVIVQRKEEKWWLPVPCVPPGGLS 253
            D L++F+   EFWY    +E+G                  R  +KWWLP   VPPGGLS
Sbjct: 125 IDTLDNFRGHNEFWYVSRDSEEGQQARN------------DRTNDKWWLPPVKVPPGGLS 172
Query: 254 EKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYT 313
           E SR+ L  ++D   Q+ KAA AIN+ +L+E EIP+SY+ +LPK+G+A LGD IY+ + T
Sbjct: 173 EPSRRXLYFQKDSVTQVQKAAXAINAQVLSEXEIPESYIDSLPKNGRASLGDSIYKSI-T 231
Query: 314 TEKFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDR 373
            E F P+  L  L  ++EH+ L+L + +EAS+  W+RK     +KSSW     L      
Sbjct: 232 EEWFDPEQFLAXLDXSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSL------ 285
Query: 374 SDKNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNT 433
            +K  L   RAE++L  LKQ++P L Q+SLD  KIQ N+DVGQAVLESYSR+LE LA+  
Sbjct: 286 -EKRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTV 344
Query: 434 VAWVEDVLFVD 444
            + +EDVL+ D
Sbjct: 345 XSRIEDVLYTD 355
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
2ntx_A	365	EMB|CAB41934.1, prone8; dimer, guanine nucleotide	1e-169
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A Length = 365

 Score =  480 bits (1236), Expect = e-169
 Identities = 168/376 (44%), Positives = 231/376 (61%), Gaps = 42/376 (11%)

Query: 102 DQESMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLK 161
             E    ++E+MK+RFAKLLLGEDMSG GKGV +A+ +SNAITNL A++FG+  +L P+ 
Sbjct: 3   RSERQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMP 62

Query: 162 PEKKALWKREMDCLLSVCDYIVEFVSESQNLRDGREVE---------------------- 199
            +++A WK+E+D LLSV D+IVEFV   Q  +DG   E                      
Sbjct: 63  QDRQARWKKEIDWLLSVTDHIVEFVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDA 122

Query: 200 ---DILESFQ-DTEFWYAEQGSMSSNSTRSGSFRRVIVQRKEEKWWLPVPCVPPGGLSEK 255
              D L++F+   EFWY  + S      R+         R  +KWWLP   VPPGGLSE 
Sbjct: 123 MLIDTLDNFRGHNEFWYVSRDSEEGQQARN--------DRTNDKWWLPPVKVPPGGLSEP 174

Query: 256 SRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTE 315
           SR+ L  ++D   Q+ KAAMAIN+ +L+EMEIP+SY+ +LPK+G+A LGD IY+ + T E
Sbjct: 175 SRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSI-TEE 233

Query: 316 KFSPDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSD 375
            F P+  L  L +++EH+ L+L + +EAS+  W+RK     +KSSW     L       +
Sbjct: 234 WFDPEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSL-------E 286

Query: 376 KNHLLAARAESLLFYLKQRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVA 435
           K  L   RAE++L  LKQ++P L Q+SLD  KIQ N+DVGQAVLESYSR+LE LA+  ++
Sbjct: 287 KRELFEERAETILVLLKQKFPGLPQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMS 346

Query: 436 WVEDVLFVDRSVRNQD 451
            +EDVL+ D     Q 
Sbjct: 347 RIEDVLYTDTLALKQT 362

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 62/429 (14%), Positives = 119/429 (27%), Gaps = 148/429 (34%)

Query: 73  NWLVSR----SGQPALGRPEMRQQKTVVDKNLDD------------QESMDLELELMKER 116
            +L+S       QP++      +Q    D+  +D            Q  + L   L++ R
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQ---RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 117 FAKLLLGEDMSGSGKGVCTAVTISNA--ITNLYATVFGQNLRLAPLKPEKKALWKREMDC 174
            AK +L + + GSGK         +      +   +F                W      
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF----------------W------ 186

Query: 175 LLSVCDYIVEFVSESQNLRDGREVEDILESFQDTEFWYAEQGSMSSNSTRSGSFRRVIVQ 234
                  +        NL++    E +LE  Q     Y    + +S S  S + +  I  
Sbjct: 187 -------L--------NLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 235 RKEEKWWLPVPCVPPGGLSEKSRKH----LRHKRDCANQIHKAAMAINSTILA---EMEI 287
            + E   L         L  K  ++    L + ++ A      A  ++  IL      ++
Sbjct: 230 IQAELRRL---------LKSKPYENCLLVLLNVQN-AKAW--NAFNLSCKILLTTRFKQV 277

Query: 288 PDSYMANLPKSGKACLGDFIYRYMYTTEKFSPDHLLDCLSIASEHEALEL-ADHVEASMY 346
            D   A                   TT   S DH    L   +  E   L   +++    
Sbjct: 278 TDFLSAA------------------TTTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQ 316

Query: 347 TWRRKAC-------------MSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFY-LK 392
              R+               +    ++WD  K +  +        ++ +    L     +
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----LTTIIESSLNVLEPAEYR 372

Query: 393 QRYPELAQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAW-------VEDVL--FV 443
           + +  L+        I              + +L  +      W       V  V+    
Sbjct: 373 KMFDRLSVFPPSA-HIP-------------TILLSLI------WFDVIKSDVMVVVNKLH 412

Query: 444 DRSVRNQDQ 452
             S+  +  
Sbjct: 413 KYSLVEKQP 421

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	452
2ntx_A	365	EMB|CAB41934.1, prone8; dimer, guanine nucleotide	100.0

>2ntx_A EMB|CAB41934.1, prone8; dimer, guanine nucleotide exchange factor, signaling protein; HET: MSE; 2.20A {Arabidopsis thaliana} PDB: 2nty_A* 2wbl_A

Probab=100.00  E-value=3.9e-183  Score=1329.17  Aligned_cols=331  Identities=50%  Similarity=0.857  Sum_probs=281.9

Q ss_pred             cchHHHHHHHHHHHHhhhccCCCCCCCchhhHHHHHHHHHHHHHhhhhccccccCCChhHHHhhhhhccccccccCeeEE
Q 041621          105 SMDLELELMKERFAKLLLGEDMSGSGKGVCTAVTISNAITNLYATVFGQNLRLAPLKPEKKALWKREMDCLLSVCDYIVE  184 (452)
Q Consensus       105 ~~~se~E~MKErFaKLLLGEDMSGggKGV~tALAiSNAITNL~AtVFGelwrLEPl~~ekK~~WrREmdwLLSV~D~IVE  184 (452)
                      ...+|+||||||||||||||||||||||||||||||||||||||||||||||||||++|||+||||||||||||||||||
T Consensus         6 ~~~se~e~mKErFaKLLLGEDmSG~gkGV~tAlAiSNAITNL~AsvFGe~~rLEPl~~ekK~~WrrEmdwLLsv~d~IVE   85 (365)
T 2ntx_A            6 RQQADMEMMKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFGEQTKLQPMPQDRQARWKKEIDWLLSVTDHIVE   85 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCTTSSCCSCCHHHHHHHHHHHHHHHHHTTC-CCCCCCHHHHHHHHHHHHHHHGGGGGCEE
T ss_pred             CCchHHHHHHHHHHHHhhcCCCCCCCCcccHHHHHHhhhhHHHHHHhhhhhccCCCChHHHHHHHHhcceeeeccceeEE
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccCCCcchh-------------------------HhhhccCC-CeeEeeeCCCCCCCCCCCCCcccccccccCc
Q 041621          185 FVSESQNLRDGREVE-------------------------DILESFQD-TEFWYAEQGSMSSNSTRSGSFRRVIVQRKEE  238 (452)
Q Consensus       185 lvPs~Q~~~dG~~~E-------------------------e~LDsf~~-tEFWYv~~g~~~~~~~~s~s~r~~~~~R~ee  238 (452)
                      |||++|++|||+++|                         |+||||+| ||||||++|+..       +.++ ..|||++
T Consensus        86 ~vPs~Q~~~dG~~~EvM~~r~RsDl~~NlPALrKLD~MLle~LDsf~d~tEFWYv~~g~~~-------~~~~-~~~r~ee  157 (365)
T 2ntx_A           86 FVPSQQTSKDGVCTEIMVTRQRGDLLMNIPALRKLDAMLIDTLDNFRGHNEFWYVSRDSEE-------GQQA-RNDRTND  157 (365)
T ss_dssp             EEEC----------CCEEEEECHHHHTHHHHHHHHHHHHHHHHHGGGSCCCCEEC-------------------------
T ss_pred             eccccccCCCCceEEEeeccccchhhcCcHHHHHHHHHHHHHHHhCCCCCeeEEecCCCCc-------cccC-Ccccccc
Confidence            999999999999999                         99999999 999999999622       2233 7899999


Q ss_pred             cccccCCcCCCCCCCHHHHHhhhhhhhhHHHHHHHHHHhhhhhhhcCCCchHHHhhccccCccchhHHHHHhhccCCCCC
Q 041621          239 KWWLPVPCVPPGGLSEKSRKHLRHKRDCANQIHKAAMAINSTILAEMEIPDSYMANLPKSGKACLGDFIYRYMYTTEKFS  318 (452)
Q Consensus       239 KWWLP~p~VP~~GLSe~~RK~L~~qrd~~nQIlKAAmAIN~~vL~EMeIPe~y~esLPKnGrasLGD~iYr~i~t~e~Fs  318 (452)
                      |||||+|||||+||||++||+|||||||||||||||||||++||+|||||++|+|+||||||+||||.|||+| |+|+||
T Consensus       158 KWWLP~p~VP~~GLSe~~RK~L~~qrd~~~QIlKAAmAIN~~vL~EMeiP~~y~esLPKnGrasLGd~iYr~i-t~d~Fs  236 (365)
T 2ntx_A          158 KWWLPPVKVPPGGLSEPSRRMLYFQKDSVTQVQKAAMAINAQVLSEMEIPESYIDSLPKNGRASLGDSIYKSI-TEEWFD  236 (365)
T ss_dssp             ---CCCEECCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHSCSCHHHHHCHHHHHHH-TCSSCC
T ss_pred             cccCCCCCCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHhHhHhhcCCCcHHHHHhcccccccccHHHHHHHH-hhccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999 999999


Q ss_pred             hhhHhhhcCchhhhHHHhhhhhhHHHHHHHHHhhhccCCCcchhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhhCCCC
Q 041621          319 PDHLLDCLSIASEHEALELADHVEASMYTWRRKACMSHSKSSWDMVKDLMSETDRSDKNHLLAARAESLLFYLKQRYPEL  398 (452)
Q Consensus       319 pe~lL~~ldLssEH~aLe~anRvEAsi~iWrrK~~~~~~kssW~~vk~l~~~~~~~dK~e~laeRAEtlL~~LKqRfPgL  398 (452)
                      |||||+||||+|||+|||+|||||||||+||||++.+++|+||+++++.       |||++|++|||+||+|||||||||
T Consensus       237 pe~ll~~ldlssEH~~le~anRiEAsi~vWrrk~~~k~~kssW~~~~~~-------dK~~~l~eRAEtlL~~LKqRfPgl  309 (365)
T 2ntx_A          237 PEQFLAMLDMSTEHKVLDLKNRIEASVVIWKRKLHTKDTKSSWGSAVSL-------EKRELFEERAETILVLLKQKFPGL  309 (365)
T ss_dssp             HHHHHHTSCCCSHHHHHHHHHHHHHHHHHHHHC--------------CH-------HHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhccCccHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccch-------hHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999987643       899999999999999999999999


Q ss_pred             CcchhhhhhhhhchhhHHHHHHHHHHHHHHhHHHHHHhhhhHHhhchhhhccC
Q 041621          399 AQTSLDTCKIQCNQDVGQAVLESYSRVLEGLAFNTVAWVEDVLFVDRSVRNQD  451 (452)
Q Consensus       399 pQT~LD~sKIQyNkDVG~aILESYSRVLEsLAfnI~sRIdDVL~~D~~~~~~~  451 (452)
                      |||+||++||||||||||||||||||||||||||||+|||||||+|++++++.
T Consensus       310 pQTsLD~sKIQyNkDVG~aILESYSRvLesLAf~I~sRIdDvL~~D~~~~~~~  362 (365)
T 2ntx_A          310 PQSSLDISKIQFNKDVGQAVLESYSRILESLAYTVMSRIEDVLYTDTLALKQT  362 (365)
T ss_dssp             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence            99999999999999999999999999999999999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00