Citrus Sinensis ID: 041667

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------66
MSSGFPGGGGGGPDLYSGLAAGGRSITMNGNQLSHQPSYRSSQLPGIFMDQMTSSPQIANRNLIGKRTFNDYQITHHHHQQQQQLFQQNHINPAMNSLFLRSVKPRTYQNLSPISPLDFSPNNINNNNNNVLSPDLQQSLPLSHRYNLPLLQQQLQQQQQPRLYQQHQQQQHVALVSNTIPYVDNNNTVPSYNNRVQVQGQESEKKMLNRLQELEKQLLDDEEEGDDVSVITNTNSEWSETIQNLITFSPKQTVSSIRPLAPSPTTSSSSCSSSSVASPATSCSKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccEEEEEccccccccccccccccccHHHHHHHHHcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccEEEEEccEEEEEEccccEEEEEccc
ccccccccccccccEEEcccccccEEEcccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHccccccHcccccccccccccccccccccccccccHHcccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHccccEEEEEEcccccccHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEccEEHccHccccHHHcccccccEEEEEHHHHHHcccccccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccEEEEccccEEEEcccccEEEEEEccc
mssgfpggggggpdlysglaaggrsitmngnqlshqpsyrssqlpgifmdqmtsspqianrnligkrtfndyqithHHHQQQQQLFQQnhinpamnslflrsvkprtyqnlspispldfspnninnnnnnvlspdlqqslplshrynlpLLQQQLQQQQQPRLYQQHQQQQHVALVsntipyvdnnntvpsynnrvqvqgQESEKKMLNRLQELEKQLlddeeegddvsVITNTNSEWSETIQNLItfspkqtvssirplapspttsssscssssvaspatscskQTVIEAATAVSEGKYDVASEILTRLSQatnskgnsEQRLMEHMCSALKsrvnphenpppvaelfgkehaestqllydfspcfslGFMAANLAILEATMEqttgntigsnkihvidfdigqggqyMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLkfddlsrdslgcepdetlAVNFAFklfrmpdesvstenprdELLRRVKGLSPSVVTLVEQetntntapFMARVNEACAYYGALFdsiestvlrdhsdrvkvEEGLSRKLANsvacegrdrverCEVFGKWRARMRMAGFELKPMSQIIAESMRTrlssgnrvnpgftvkeenggicfgwmgRTLTVVSAWR
mssgfpgggggGPDLYSGLAAGGRSITMNGNQLSHQPSYRSSQLPGIFMDQMTSSPQIANRNLIGKRTFNDYQITHHHHQQQQQLFQQNHINPAMNSLFLRSVKPRTYQNLSpispldfspnNINNNNNNVLSPDLQQSLPLSHRYNLPLLQQQLQQQQQPRLYQQHQQQQHVALVSNTIPYVDNNNTVPSYNNRVQVQGQESEKKMLNRLQELEKqllddeeegdDVSVITNTNSEWSETIQNLITFSPKQTVSSIRPLApspttsssscssssvaspatscskQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAvadgtaseekLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRmpdesvstenprdellrrvkglspsvVTLVeqetntntapfMARVNEACAYYGALFDSIESTVLRDHSdrvkveeglsrklansvacegrdrvercEVFGKWRARMRMAGFELKPMSQIIAESMRtrlssgnrvnpgftvkeenggicfgwmgrtlTVVSAWR
MSSgfpggggggpDLYSGLAAGGRSITMNGNQLSHQPSYRSSQLPGIFMDQMTSSPQIANRNLIGKRTFNDYqithhhhqqqqqlfqqnhINPAMNSLFLRSVKPRTYQNLSPISPLDFSPnninnnnnnVlspdlqqslplsHRYNlpllqqqlqqqqqprlyqqhqqqqhVALVSNTIPYVDNNNTVPSYNNRVQVQGQESEKKMLNRlqelekqllddeeegddVSVITNTNSEWSETIQNLITFSPKQTVSSIRPLapspttsssscssssvaspatscsKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR
***********************************************************************************************************************************************************************************IPYV******************************************************WSETIQNLITF***********************************************************************************************************STQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTA***KLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRM***********************SVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIA*************NPGFTVKEENGGICFGWMGRTLTVVSA**
********GGGGPDLYS***************************************************FNDYQ*********************************************************************************************************************************************************************************************************************TVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPH**************AESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSA*LNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR
*********GGGPDLYSGLAAGGRSITMNGNQLSHQPSYRSSQLPGIFMDQMTSSPQIANRNLIGKRTFNDYQIT**********FQQNHINPAMNSLFLRSVKPRTYQNLSPISPLDFSPNNINNNNNNVLSPDLQQSLPLSHRYNLPLLQQ*******************VALVSNTIPYVDNNNTVPSYNNRVQVQGQESEKKMLNRLQELEKQLLDDEEEGDDVSVITNTNSEWSETIQNLITFSPK*********************************KQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPD********RDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR
**********GGPDLYSGLAAGGRSITMNGNQLSHQPSYRSSQLPGIFMDQMTSSPQI*NRNLIGKRTFNDYQITHHHHQQQQQLFQQNHINPAMNSLFLRSVKPR*****SPISPLDFSPNNI*****************LSHRYNLPLLQQQLQ**Q******QH***********************************************************DVSVITNTNSEWSETIQNLITFSP*****************************ATSCSKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR
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MSSGFPGGGGGGPDLYSGLAAGGRSITMNGNQLSHQPSYRSSQLPGIFMDQMTSSPQIANRNLIGKRTFNDYQITHHHHQQQQQLFQQNHINPAMNSLFLRSVKPRTYQNLSPISPLDFSPNNINNNNNNVLSPDLQQSLPLSHRYNLPLLQQQLQQQQQPRLYQQHQQQQHVALVSNTIPYVDNNNTVPSYNNRVQVQGQESxxxxxxxxxxxxxxxxxxxxxGDDVSVITNTNSEWSETIQNLITFSPKQTVSSIRPLAPSPTTSSSSCSSSSVASPATSCSKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query659 2.2.26 [Sep-21-2011]
Q9FYR7640 Scarecrow-like protein 8 yes no 0.875 0.901 0.531 1e-158
Q9SDQ3593 Scarecrow-like protein 1 no no 0.661 0.735 0.392 1e-80
Q9LDL7490 Scarecrow-like transcript no no 0.541 0.728 0.390 8e-69
Q9S7H5413 Scarecrow-like protein 21 no no 0.540 0.861 0.379 5e-66
Q8GVE1544 Chitin-inducible gibberel no no 0.540 0.654 0.377 7e-65
Q69VG1571 Chitin-inducible gibberel no no 0.543 0.626 0.371 1e-63
Q8H125597 Scarecrow-like protein 5 no no 0.547 0.604 0.380 3e-63
Q9M0M5529 Scarecrow-like protein 13 no no 0.547 0.682 0.367 5e-62
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.541 0.652 0.320 1e-41
Q9LF53523 DELLA protein RGL3 OS=Ara no no 0.528 0.665 0.330 2e-41
>sp|Q9FYR7|SCL8_ARATH Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1 Back     alignment and function desciption
 Score =  559 bits (1440), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 345/649 (53%), Positives = 431/649 (66%), Gaps = 72/649 (11%)

Query: 36  QPSYRSSQLPGIFMDQMTSSPQIANRN-LIGKRTFNDYQITHHHHQQQQQ--LFQQNHIN 92
           Q +YR+ Q+PGIF DQ+ +  ++A  N   GKRT  D+Q    H QQQQQ   + Q    
Sbjct: 39  QTTYRN-QIPGIFFDQIGN--RVAGGNGFSGKRTLADFQAAQQHQQQQQQQPFYSQ---- 91

Query: 93  PAMNSLFLRSVKPRTYQNLSPISPLDFSPNNINNNNNNVLSPDLQQSLPLSHRYNLPLLQ 152
            A+N+   RSVKPR YQN    SP+      I+  + N +S  L      S RY LP+ +
Sbjct: 92  AALNAFLSRSVKPRNYQNFQSPSPM------IDLTSVNDMS--LFGGSGSSQRYGLPVPR 143

Query: 153 QQLQQQQQPR-LYQQHQQQQHVALVSNTIPYVDNNNTVPSYNNRVQVQGQESEKKMLNRL 211
            Q QQQQ    L+   +      +  N  P +     +    NRV     ESE  MLN L
Sbjct: 144 SQTQQQQSDYGLFGGIRMGIGSGI--NNYPTLTGVPCIEPVQNRVH----ESEN-MLNSL 196

Query: 212 QELEKQLLDDEEEGDD---VSVITNTNSEWSETIQNLITFSPKQTVSSIRPLAPSPTTSS 268
           +ELEKQLLDD++E      VSVITN+NS+W   IQNL+T +P           P+P  S 
Sbjct: 197 RELEKQLLDDDDESGGDDDVSVITNSNSDW---IQNLVTPNPN----------PNPVLSF 243

Query: 269 SSCSSSSVASPATS------CSKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQ 322
           S  SSSS +SP+T+      CS+QTV+E ATA++EGK ++A+EIL R+SQ  N + NSE+
Sbjct: 244 SPSSSSSSSSPSTASTTTSVCSRQTVMEIATAIAEGKTEIATEILARVSQTPNLERNSEE 303

Query: 323 RLMEHMCSALKSRVNPHENPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEAT 382
           +L++ M +AL+SR+       PV EL+GKEH  STQLLY+ SPCF LGF AANLAIL+A 
Sbjct: 304 KLVDFMVAALRSRI-----ASPVTELYGKEHLISTQLLYELSPCFKLGFEAANLAILDAA 358

Query: 383 MEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKP-----AIVKVTAVADGT- 436
                G  I     HVIDFDIG+GGQY+NL   LS R NGK       +VK+TAVA+   
Sbjct: 359 DNNDGGMMIP----HVIDFDIGEGGQYVNLLRTLSTRRNGKSQSQNSPVVKITAVANNVY 414

Query: 437 ------ASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNF 490
                   EE+LKAV D LSQ+ +R+G+ + FNV   L+  DL+R+SLGC+PDETLAVN 
Sbjct: 415 GCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNL 474

Query: 491 AFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGA 550
           AFKL+R+PDESV TENPRDELLRRVKGL P VVTLVEQE N+NTAPF+ RV+E+CA YGA
Sbjct: 475 AFKLYRVPDESVCTENPRDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGA 534

Query: 551 LFDSIESTVLRDHSDRVKVEEGLSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELK 610
           L +S+ESTV   +SDR KVEEG+ RKL N+VACEG DR+ERCEVFGKWR RM MAGFEL 
Sbjct: 535 LLESVESTVPSTNSDRAKVEEGIGRKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELM 594

Query: 611 PMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 659
           P+S+ IAESM++R   GNRV+PGFTVKE+NGG+CFGWMGR LTV SAWR
Sbjct: 595 PLSEKIAESMKSR---GNRVHPGFTVKEDNGGVCFGWMGRALTVASAWR 640
Probable transcription factor involved in plant development.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SDQ3|SCL1_ARATH Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LDL7|PAT1_ARATH Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S7H5|SCL21_ARATH Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1 Back     alignment and function description
>sp|Q8GVE1|CIGR2_ORYSJ Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1 Back     alignment and function description
>sp|Q69VG1|CIGR1_ORYSJ Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1 Back     alignment and function description
>sp|Q8H125|SCL5_ARATH Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0M5|SCL13_ARATH Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9LF53|RGL3_ARATH DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query659
255545206615 DELLA protein GAI, putative [Ricinus com 0.908 0.973 0.614 0.0
224079692640 GRAS family transcription factor [Populu 0.910 0.937 0.594 0.0
302399053653 SCL domain class transcription factor [M 0.933 0.941 0.568 0.0
224134707666 GRAS family transcription factor [Populu 0.896 0.887 0.581 1e-179
225464549614 PREDICTED: scarecrow-like protein 8-like 0.911 0.978 0.566 1e-178
350538113631 GRAS10 protein [Solanum lycopersicum] gi 0.930 0.971 0.540 1e-174
118486241521 unknown [Populus trichocarpa] 0.761 0.963 0.640 1e-174
449525188598 PREDICTED: scarecrow-like protein 8-like 0.895 0.986 0.529 1e-164
449456476634 PREDICTED: scarecrow-like protein 8-like 0.881 0.916 0.527 1e-161
30696193640 scarecrow-like protein 8 [Arabidopsis th 0.875 0.901 0.531 1e-156
>gi|255545206|ref|XP_002513664.1| DELLA protein GAI, putative [Ricinus communis] gi|223547572|gb|EEF49067.1| DELLA protein GAI, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/675 (61%), Positives = 490/675 (72%), Gaps = 76/675 (11%)

Query: 1   MSSGFPGGGGGGPDLYSGLAAGGRSITMNGNQLSHQPSYRSSQLPGIFMD-------QMT 53
           M+SGF GGG    D Y+G+A  GRS  MN N    QP YR+ QL  +F+D       Q T
Sbjct: 1   MASGFSGGGA---DFYTGIA--GRS--MNSNNNPSQPPYRT-QLSQMFLDPASQIAHQRT 52

Query: 54  SSPQIANRNLIGKRTFNDYQITHHHHQQQQQLFQQNHINPAMNSLFLRSVKPRTYQNLSP 113
           ++  +  ++LIGKRT  D+Q     + QQQ    Q +INPA   L LRSVKPR YQ+ SP
Sbjct: 53  TNTNLTTQSLIGKRTLADFQAHQQQNYQQQH---QPNINPA---LLLRSVKPRMYQHTSP 106

Query: 114 IS---PLDFSPNNINNNNNNVLSPDLQQSLPLSHRYN-LPLLQQQLQQQQQPRLYQQHQQ 169
           IS   P+DFS N         LSP+L     LS RY  +PLLQQ                
Sbjct: 107 ISTLSPIDFSGN---------LSPELPS---LSQRYGGVPLLQQL--------------- 139

Query: 170 QQHVALVSNTIPYVDNNNTVPSYNNRVQVQGQESEKKMLNRLQELEKQLLDD--EEEGDD 227
           + H   + + +P +   NT+ ++ +R    GQE++KKM+NRLQELEKQLLDD  +EEGD 
Sbjct: 140 RPHPINLGSGLPCM---NTLQNHQHR---GGQETQKKMMNRLQELEKQLLDDNDDEEGDA 193

Query: 228 VSVIT--NTNSEWSETIQNLITFSPKQTVSSIRPLAPSPTTSSSSCSSSSVASPATSCSK 285
           VSVIT  N+NSEWSETIQNLIT S      S         + +SS SS+SV +P  + SK
Sbjct: 194 VSVITSANSNSEWSETIQNLITSSSSSIPIS--------PSPTSSSSSTSVTTPLPNYSK 245

Query: 286 QTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPV 345
            T++EAA+A+ +GK +VASEILTR+SQ +N +GNSEQRLME+M  ALKSR+N  +NPPPV
Sbjct: 246 HTLVEAASAIYDGKTEVASEILTRVSQVSNPRGNSEQRLMEYMSMALKSRLNSADNPPPV 305

Query: 346 AELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQ 405
           AELF KEH  STQLLY+ SPCF LGFMAANLAIL++T++Q    T      HVIDFDIGQ
Sbjct: 306 AELFAKEHIASTQLLYELSPCFKLGFMAANLAILQSTVDQPNSGT----GFHVIDFDIGQ 361

Query: 406 GGQYMNLFHALSARLNGKPAIVKVTAVADGTASE-EKLKAVRDKLSQVAERVGVCLRFNV 464
           G QY+NL HALS RLNGKPA VK+TAVAD +A E E+LK V   LSQ+AE+ GV L FNV
Sbjct: 362 GCQYLNLLHALSERLNGKPATVKITAVADNSAEEKERLKVVGTTLSQLAEQFGVSLHFNV 421

Query: 465 AICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVT 524
            +  K  DLSR+SLGCEP+E LAVNFAF L+RMPDESVSTENPRDELLRRVKGL+P VVT
Sbjct: 422 -VSAKLGDLSRESLGCEPEEPLAVNFAFNLYRMPDESVSTENPRDELLRRVKGLAPRVVT 480

Query: 525 LVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLSRKLANSVACE 584
           LVEQE NTNTAPFMARVNE  +YYGALF+SIESTV RDH++RVKVEEGL RKLANSVACE
Sbjct: 481 LVEQEMNTNTAPFMARVNEGSSYYGALFESIESTVQRDHTERVKVEEGLGRKLANSVACE 540

Query: 585 GRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGIC 644
           GRDRVERCEVFGKWRARM MAGFELKP+SQ IAES++ RLSSGNRVNPGFTVKE+NGG+C
Sbjct: 541 GRDRVERCEVFGKWRARMGMAGFELKPVSQNIAESLKARLSSGNRVNPGFTVKEDNGGVC 600

Query: 645 FGWMGRTLTVVSAWR 659
           FGWMG+TLTV SAWR
Sbjct: 601 FGWMGKTLTVASAWR 615

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224079692|ref|XP_002305914.1| GRAS family transcription factor [Populus trichocarpa] gi|222848878|gb|EEE86425.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302399053|gb|ADL36821.1| SCL domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|224134707|ref|XP_002327470.1| GRAS family transcription factor [Populus trichocarpa] gi|222836024|gb|EEE74445.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225464549|ref|XP_002272471.1| PREDICTED: scarecrow-like protein 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|350538113|ref|NP_001234327.1| GRAS10 protein [Solanum lycopersicum] gi|89474476|gb|ABD72965.1| GRAS10 [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|118486241|gb|ABK94962.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449525188|ref|XP_004169600.1| PREDICTED: scarecrow-like protein 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456476|ref|XP_004145975.1| PREDICTED: scarecrow-like protein 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30696193|ref|NP_200064.3| scarecrow-like protein 8 [Arabidopsis thaliana] gi|75173299|sp|Q9FYR7.1|SCL8_ARATH RecName: Full=Scarecrow-like protein 8; Short=AtSCL8; AltName: Full=GRAS family protein 30; Short=AtGRAS-30 gi|10177034|dbj|BAB10182.1| SCARECROW transcriptional regulator-like [Arabidopsis thaliana] gi|332008840|gb|AED96223.1| scarecrow-like protein 8 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query659
TAIR|locus:2184625640 SCL8 "AT5G52510" [Arabidopsis 0.625 0.643 0.584 5.1e-138
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.550 0.612 0.415 4.4e-68
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.537 0.722 0.398 3.7e-64
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.540 0.861 0.379 3.1e-60
TAIR|locus:2008076597 SCL5 "AT1G50600" [Arabidopsis 0.547 0.604 0.380 4e-58
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.543 0.654 0.324 1.5e-42
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.537 0.676 0.333 1.7e-41
TAIR|locus:2174974584 AT5G66770 "AT5G66770" [Arabido 0.534 0.602 0.318 4.3e-38
TAIR|locus:2025022769 SCL14 "SCARECROW-like 14" [Ara 0.549 0.470 0.275 1.2e-35
TAIR|locus:2148293610 AT5G59450 [Arabidopsis thalian 0.549 0.593 0.273 1.7e-34
TAIR|locus:2184625 SCL8 "AT5G52510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1249 (444.7 bits), Expect = 5.1e-138, Sum P(2) = 5.1e-138
 Identities = 260/445 (58%), Positives = 317/445 (71%)

Query:   228 VSVITNTNSEWSETIQNLITFSPKQT-VSSIRPLXXXXXXXXXXXXXXXXXXXXXXXXKQ 286
             VSVITN+NS+W   IQNL+T +P    V S  P                         +Q
Sbjct:   216 VSVITNSNSDW---IQNLVTPNPNPNPVLSFSP-----SSSSSSSSPSTASTTTSVCSRQ 267

Query:   287 TVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVA 346
             TV+E ATA++EGK ++A+EIL R+SQ  N + NSE++L++ M +AL+SR+       PV 
Sbjct:   268 TVMEIATAIAEGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRI-----ASPVT 322

Query:   347 ELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQG 406
             EL+GKEH  STQLLY+ SPCF LGF AANLAIL+A      G  I     HVIDFDIG+G
Sbjct:   323 ELYGKEHLISTQLLYELSPCFKLGFEAANLAILDAADNNDGGMMIP----HVIDFDIGEG 378

Query:   407 GQYMNLFHALSARLNGKPA-----IVKVTAVADGT-------ASEEKLKAVRDKLSQVAE 454
             GQY+NL   LS R NGK       +VK+TAVA+           EE+LKAV D LSQ+ +
Sbjct:   379 GQYVNLLRTLSTRRNGKSQSQNSPVVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGD 438

Query:   455 RVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRR 514
             R+G+ + FNV   L+  DL+R+SLGC+PDETLAVN AFKL+R+PDESV TENPRDELLRR
Sbjct:   439 RLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAFKLYRVPDESVCTENPRDELLRR 498

Query:   515 VKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEGLS 574
             VKGL P VVTLVEQE N+NTAPF+ RV+E+CA YGAL +S+ESTV   +SDR KVEEG+ 
Sbjct:   499 VKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGIG 558

Query:   575 RKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGF 634
             RKL N+VACEG DR+ERCEVFGKWR RM MAGFEL P+S+ IAESM++R   GNRV+PGF
Sbjct:   559 RKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSR---GNRVHPGF 615

Query:   635 TVKEENGGICFGWMGRTLTVVSAWR 659
             TVKE+NGG+CFGWMGR LTV SAWR
Sbjct:   616 TVKEDNGGVCFGWMGRALTVASAWR 640
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005737 "cytoplasm" evidence=IDA
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008076 SCL5 "AT1G50600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174974 AT5G66770 "AT5G66770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025022 SCL14 "SCARECROW-like 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148293 AT5G59450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FYR7SCL8_ARATHNo assigned EC number0.53150.87550.9015yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query659
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-132
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  392 bits (1008), Expect = e-132
 Identities = 160/384 (41%), Positives = 214/384 (55%), Gaps = 22/384 (5%)

Query: 285 KQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHE---- 340
              ++  A AVS G   +A  IL RL+Q  +  G+  QRL  +   AL +R+        
Sbjct: 2   VHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSIY 61

Query: 341 ---NPPPVAELFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIH 397
               P P       E   + +L Y+ SP    G   AN AILEA          G  ++H
Sbjct: 62  SALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFE--------GEERVH 113

Query: 398 VIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGT-ASEEKLKAVRDKLSQVAERV 456
           +IDFDIGQG Q+ +L  AL++R  G P  +++T +     +S E+L+   D+L+Q A+ +
Sbjct: 114 IIDFDIGQGLQWPSLIQALASR-PGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSL 172

Query: 457 GVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVK 516
           GV   FN  +  + +DL  + L   P E LAVN  F L R+ DESVS E+P    LR VK
Sbjct: 173 GVPFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESP--TFLRLVK 230

Query: 517 GLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSR 575
            L+P VVTLVEQE N N+APF+AR  EA  YY ALFDS+E+T+ RD  +R KVE   L R
Sbjct: 231 SLNPKVVTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGR 290

Query: 576 KLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFT 635
           ++ N VACEG +RVER E FGKWR RMR AGF   P+S+   +  +  L        G+ 
Sbjct: 291 EIVNVVACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLL--RLYYVDGYR 348

Query: 636 VKEENGGICFGWMGRTLTVVSAWR 659
           V+E+NG +  GW GR L   SAWR
Sbjct: 349 VEEDNGSLVLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 659
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.1
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.27
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.38
PLN02233261 ubiquinone biosynthesis methyltransferase 94.49
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 93.39
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 93.27
PRK06202232 hypothetical protein; Provisional 90.83
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 90.28
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 90.06
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 87.26
PRK12335287 tellurite resistance protein TehB; Provisional 86.45
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 86.43
PLN02585315 magnesium protoporphyrin IX methyltransferase 86.37
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 86.09
TIGR03438301 probable methyltransferase. This model represents 85.54
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 84.54
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 84.3
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 83.45
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 83.29
PF03291331 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 82.38
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 81.81
PRK05134233 bifunctional 3-demethylubiquinone-9 3-methyltransf 81.79
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 81.45
PRK11207197 tellurite resistance protein TehB; Provisional 80.5
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-106  Score=864.80  Aligned_cols=365  Identities=38%  Similarity=0.641  Sum_probs=341.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHhhccCCCCCC----Ccchh---ccchhHHHH
Q 041667          284 SKQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENP----PPVAE---LFGKEHAES  356 (659)
Q Consensus       284 ~~qLLl~CAeAVa~gd~~~A~~iL~~L~~~aSp~Gd~~QRLAayFaeAL~aRl~~~~~~----~~~~~---l~~~e~~~A  356 (659)
                      +++||++||+||++||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+.+..    .+...   ....+...|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999984321    11111   113567789


Q ss_pred             HHHHhhcCCCccchhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCC
Q 041667          357 TQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGT  436 (659)
Q Consensus       357 ~q~l~e~sP~~kFah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~  436 (659)
                      |+.||++|||+||||||||||||||++        |+++||||||||++|.|||+|||+||.|++| ||+||||||+.|.
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~--------g~~~vHIID~~i~~G~QW~~LiqaLa~R~~g-pp~LrIT~i~~~~  151 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFE--------GERRVHIIDFGIGFGVQWPSLIQALASRPGG-PPSLRITGIGPPN  151 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhc--------cCcceEEEeccCCcchHHHHHHHHHhcCCCC-CCeEEEEeccCCC
Confidence            999999999999999999999999998        7899999999999999999999999999987 5599999999975


Q ss_pred             C-CHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH
Q 041667          437 A-SEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV  515 (659)
Q Consensus       437 ~-~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V  515 (659)
                      . ....+++||+||.+||+++||||||++|...++++++.++|++++||+|||||+|+||||.+++...++|||.||+.|
T Consensus       152 ~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i  231 (374)
T PF03514_consen  152 SGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI  231 (374)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH
Confidence            3 468899999999999999999999999766699999999999999999999999999999999988889999999999


Q ss_pred             HccCCcEEEEEeccCCCCCCChHHHHHHHHHHHHHHHHHhhhccCCCchhHHHHHHH-HhHHHhhhhccccccccccccc
Q 041667          516 KGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEV  594 (659)
Q Consensus       516 rsL~PkVVtlVEqEan~Ns~~F~~RF~EAL~yYsAlFDSLdatl~rds~eR~~vE~~-lgreI~NiVAcEG~eRvER~E~  594 (659)
                      |+|+|+|||+||+|+|||+++|++||.|||+||+|+|||||+++|+++.+|..+|+. ||++|+|||||||.+|+||||+
T Consensus       232 r~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~  311 (374)
T PF03514_consen  232 RSLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHER  311 (374)
T ss_pred             HhcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999996 9999999999999999999999


Q ss_pred             cccHHHhhhhCCceecCCCHHHHHHHHHHhhCCCCCCCCcEEEeeCCEEEEeeCCceeEEEeecC
Q 041667          595 FGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR  659 (659)
Q Consensus       595 ~~kWr~Rm~~AGF~~vplS~~va~~vk~~L~~g~~~~~gf~V~ee~g~L~LgWkgrpLi~aSAWr  659 (659)
                      +++|+.||.+|||+++|+|+.++.+++.+|..+  .++||+|++++|||+|||||+||+++||||
T Consensus       312 ~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~--~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  312 LEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKF--PGDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             hhHHHHHHHhcCCeecCCCHHHHHHHHHHHhcc--CCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999999999999999999999999999999853  368999999999999999999999999998

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query659
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 72.2 bits (176), Expect = 3e-13
 Identities = 77/565 (13%), Positives = 151/565 (26%), Gaps = 230/565 (40%)

Query: 76  HHHHQQQQQLFQQNHINPAMNSLFLRSVKPRTYQNLSPISPLDFSPNNINNNNNNVLSPD 135
           HHHH    +  +  +    + S+F  +               +F   ++ +   ++LS +
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVD------------NFDCKDVQDMPKSILSKE 49

Query: 136 -----LQQSLPLSHRYNL--PLLQQQLQQQQQ----------PRLYQQ-HQQQQHVALVS 177
                +     +S    L   LL +Q +  Q+            L      +Q+  ++  
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-- 107

Query: 178 NTIPYVDNNNTVPSYNNRVQVQGQESEKKMLNRLQ---ELEKQLLDDEEEGDDVSVITNT 234
            T  Y+          +R+    Q   K  ++RLQ   +L + LL+              
Sbjct: 108 MTRMYI-------EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA---------- 150

Query: 235 NSEWSETIQNLITF----SPKQTVSSIRPLAPSPTTSSSSCSSSSVASPATSCSKQTVIE 290
                   +N++      S K        +A         C S  V         Q  ++
Sbjct: 151 --------KNVLIDGVLGSGKTW------VA------LDVCLSYKV---------QCKMD 181

Query: 291 AATA-VSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNPHENPPPVAE-- 347
                ++    +    +L  L           Q+L+  +     SR +   N        
Sbjct: 182 FKIFWLNLKNCNSPETVLEML-----------QKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 348 -------LFGKEHAESTQLLYDFSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVID 400
                  L  K +     LL                 +L         N    N      
Sbjct: 231 QAELRRLLKSKPYENC--LL-----------------VLL--------NV--QNAKAWNA 261

Query: 401 FDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCL 460
           F++               +       + +T     T         R K  QV + +    
Sbjct: 262 FNLS-------------CK-------ILLT-----T---------RFK--QVTDFLSAAT 285

Query: 461 RFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSP 520
             +++       L   S+   PDE  ++     L          +    +L R V   +P
Sbjct: 286 TTHIS-------LDHHSMTLTPDEVKSL-LLKYL----------DCRPQDLPREVLTTNP 327

Query: 521 SVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIESTVLRDHSDR------VKVEEGLS 574
             ++++                                 +RD          V  ++ L+
Sbjct: 328 RRLSII----------------------AES--------IRDGLATWDNWKHVNCDK-LT 356

Query: 575 RKLANSVAC----EGRDRVERCEVF 595
             + +S+      E R   +R  VF
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVF 381
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query659
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.43
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.14
1vl5_A260 Unknown conserved protein BH2331; putative methylt 95.2
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 94.87
3dh0_A219 SAM dependent methyltransferase; cystal structure, 94.7
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.51
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 94.01
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 93.86
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.78
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 93.76
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.3
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 92.98
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 92.92
3hnr_A220 Probable methyltransferase BT9727_4108; structural 92.53
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 92.19
2r3s_A335 Uncharacterized protein; methyltransferase domain, 92.19
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 92.1
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 91.95
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 91.83
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 91.6
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 91.42
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 91.12
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 91.12
3f4k_A257 Putative methyltransferase; structural genomics, P 90.63
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 90.33
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 90.2
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 90.02
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 90.01
3m70_A286 Tellurite resistance protein TEHB homolog; structu 89.96
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 89.74
3gu3_A284 Methyltransferase; alpha-beta protein, structural 89.4
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 89.15
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 88.57
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 88.45
3giw_A277 Protein of unknown function DUF574; rossmann-fold 87.3
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 86.73
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 85.93
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 85.31
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 84.86
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 84.59
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 83.9
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 83.74
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 83.38
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 82.54
3ocj_A305 Putative exported protein; structural genomics, PS 82.22
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 81.99
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 81.97
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 81.9
2p7i_A250 Hypothetical protein; putative methyltransferase, 81.52
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 81.4
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.43  E-value=0.0023  Score=64.55  Aligned_cols=109  Identities=16%  Similarity=0.250  Sum_probs=65.7

Q ss_pred             ceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCceeEEEEEecCCCCCC
Q 041667          394 NKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKLKAVRDKLSQVAERVGVCLRFNVAICLKFDDL  473 (659)
Q Consensus       394 ~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L~~tG~rL~~fAeslgVpFEF~~V~~~~ledL  473 (659)
                      +.-+|+|+|.|.|.    +...|+.+-.  .+..+||||+..   +..++.+.+++.++.  ...+++|  +.. .+.++
T Consensus        70 ~~~~vLDlGcGtG~----~~~~la~~~~--~~~~~v~gvD~s---~~ml~~A~~~~~~~~--~~~~v~~--~~~-D~~~~  135 (261)
T 4gek_A           70 PGTQVYDLGCSLGA----ATLSVRRNIH--HDNCKIIAIDNS---PAMIERCRRHIDAYK--APTPVDV--IEG-DIRDI  135 (261)
T ss_dssp             TTCEEEEETCTTTH----HHHHHHHTCC--SSSCEEEEEESC---HHHHHHHHHHHHTSC--CSSCEEE--EES-CTTTC
T ss_pred             CCCEEEEEeCCCCH----HHHHHHHhcC--CCCCEEEEEECC---HHHHHHHHHHHHhhc--cCceEEE--eec-ccccc
Confidence            34589999999884    5566777642  335899999975   355666666554321  1223444  334 45544


Q ss_pred             CccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCcEEEEE-ecc
Q 041667          474 SRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPSVVTLV-EQE  529 (659)
Q Consensus       474 ~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~PkVVtlV-EqE  529 (659)
                      ..+     .-..  |-|.+.|||++++      .|..+|+.| +.|+|.-+.++ |.-
T Consensus       136 ~~~-----~~d~--v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          136 AIE-----NASM--VVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             CCC-----SEEE--EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             ccc-----cccc--ceeeeeeeecCch------hHhHHHHHHHHHcCCCcEEEEEecc
Confidence            322     2223  4455678998653      255678776 67999876644 543
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query659
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.65
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.68
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.14
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 95.8
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 94.93
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 93.97
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 93.49
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 93.28
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 92.55
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 91.72
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 91.25
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 90.82
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 90.26
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 89.9
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 89.19
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 88.52
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 86.87
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 85.8
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 84.99
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 82.17
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 81.82
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 81.71
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.65  E-value=0.0011  Score=62.03  Aligned_cols=127  Identities=19%  Similarity=0.251  Sum_probs=76.1

Q ss_pred             cCCCccchhhhhHHHHHHHHhhcccCCCCCCceeEEEecccCCCcchHHHHHHHHhCCCCCCCeEEEEEecCCCCCHHHH
Q 041667          363 FSPCFSLGFMAANLAILEATMEQTTGNTIGSNKIHVIDFDIGQGGQYMNLFHALSARLNGKPAIVKVTAVADGTASEEKL  442 (659)
Q Consensus       363 ~sP~~kFah~tANqAILEA~~~e~~~~~~G~~~VHIIDfdI~~G~QWpsLIqaLA~R~~G~Pp~LRITgI~~~~~~~~~L  442 (659)
                      -.|++..    .+..|.+-+...      -.+.-||+|+|.|.|.    +...|+....  .+..+||||+.+   +..+
T Consensus        18 ~iP~Y~~----~~~~i~~~~~~~------~~~~~~vLDlGCGtG~----~~~~l~~~~~--~~~~~v~giD~S---~~ml   78 (225)
T d1im8a_          18 SVPGYSN----IITAIGMLAERF------VTADSNVYDLGCSRGA----ATLSARRNIN--QPNVKIIGIDNS---QPMV   78 (225)
T ss_dssp             HSTTHHH----HHHHHHHHHHHH------CCTTCEEEEESCTTCH----HHHHHHHTCC--CSSCEEEEECSC---HHHH
T ss_pred             cCCCHHH----HHHHHHHHHHHh------cCCCCEEEEeccchhh----HHHHHHHhhc--CCCCceEEeCCC---HHHH
Confidence            3475433    345555544432      2345699999999884    4455555432  335899999986   3556


Q ss_pred             HHHHHHHHHHHHHcCceeEEEEEecCCCCCCCccccCCCCCceEEEeeecccccCCCCCCCCCChHHHHHHHH-HccCCc
Q 041667          443 KAVRDKLSQVAERVGVCLRFNVAICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRV-KGLSPS  521 (659)
Q Consensus       443 ~~tG~rL~~fAeslgVpFEF~~V~~~~ledL~~~~L~i~~gEaLaVN~~f~Lh~L~desvs~~npRd~fL~~V-rsL~Pk  521 (659)
                      +.+.+++.    ..+....++.+.. ...++       ..++.-+|-|.+.|||++.+.      +..+|+.| +.|+|.
T Consensus        79 ~~A~~~~~----~~~~~~~~~~~~~-d~~~~-------~~~~~d~i~~~~~l~~~~~~d------~~~~l~~i~~~Lkpg  140 (225)
T d1im8a_          79 ERCRQHIA----AYHSEIPVEILCN-DIRHV-------EIKNASMVILNFTLQFLPPED------RIALLTKIYEGLNPN  140 (225)
T ss_dssp             HHHHHHHH----TSCCSSCEEEECS-CTTTC-------CCCSEEEEEEESCGGGSCGGG------HHHHHHHHHHHEEEE
T ss_pred             HHHHHHhH----hhcccchhhhccc-hhhcc-------ccccceeeEEeeeccccChhh------HHHHHHHHHHhCCCC
Confidence            66655554    3344444444443 32222       334455677888899986432      34677776 789999


Q ss_pred             EEEEE
Q 041667          522 VVTLV  526 (659)
Q Consensus       522 VVtlV  526 (659)
                      -+.++
T Consensus       141 G~li~  145 (225)
T d1im8a_         141 GVLVL  145 (225)
T ss_dssp             EEEEE
T ss_pred             ceeec
Confidence            87765
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure