Citrus Sinensis ID: 041672

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
DHEEQKNPCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCDAHYHHLHQQAMMMLSGNSGSAHSASDEKVERRGVVVGRPAPADDDDHQKRMMMRKRFRT
Secondary Structure (PSIPRED)
ccccccccccccEEHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccc
Coil and Loop (DISEMBL)
dheeqknpckkVVRYKECLKNHaaaiggsatdgcgefmpsgeegsieslkcsacnchrnfhrkeigcdahyHHLHQQAMMMlsgnsgsahsasdekverrgvvvgrpapaddddhQKRMMMRKRFRT
Flexible Loop (DISEMBL)
dheeqknpckkVVRYKECLKNHAAaiggsatdgCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCDAHYHHLHQQAMMMLSGNSGSAHSASDEKverrgvvvgrpapaddddhqkrMMMRKRFRT
Low Complexity Region (SEG)
DHEEQKNPCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCDAHYHHLHQQAMMMLSGNSGSAHSASDEKVErrgvvvgrpapaDDDDHQKRMMMRKRFRT
Disordered region (IsUnstruct)
**********KVVRYKECLKNHAAAIGGSATDGCGEF********IESLKCSACNCHRNFHRKEIGCDAHYHHLHQQ**************************************************
Disordered Region (DISOPRED)
*************RYKECLKNHAAAIGGSATDGCGEFMP****GSIESLKCSACNCHRNFHRKEIG*******************************************************RKRFR*
Disordered Region (DISEMBL)
********CKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCDAHYHHLHQQAMMMLS***************RRGVVVGRPAPADDDDHQKRMMMRKRFRT
Disordered Region (DISPRO)
*******PCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCDAHYHHLHQQAMMMLSGNSGSAHSASDEKVE*****************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DHEEQKNPCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCDAHYHHLHQQAMMMLSGNSGSAHSASDEKVERRGVVVGRPAPADDDDHQKRMMMRKRFRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q9SB61	220	ZF-HD homeobox protein At	no	no	0.456	0.263	0.688	9e-19
Q9FKP8	279	ZF-HD homeobox protein At	no	no	0.417	0.189	0.698	4e-18
Q9SEZ1	242	Transcription factor HB29	no	no	0.889	0.466	0.385	3e-15

>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 3/61 (4%)

Query: 13  VRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKE---IGCDA 69
           +RY+ECLKNHA  IGG A DGC EFMPSGE+G++++LKC+AC CHRNFHRKE   IG  A
Sbjct: 47  IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRA 106

Query: 70  H 70
           H
Sbjct: 107 H 107

Putative transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabidopsis thaliana GN=At5g65410 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 13  VRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI 65
            R++ECLKN A  IGG A DGCGEFMP+G EG+I++LKC+AC CHRNFHRKE+
Sbjct: 73  FRFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL 125

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SEZ1|HB29_ARATH Transcription factor HB29 OS=Arabidopsis thaliana GN=HB29 PE=1 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 70/135 (51%), Gaps = 22/135 (16%)

Query: 13  VRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIE--SLKCSACNCHRNFHRKEIGCDAH 70
           V YKECLKNHAA +GG A DGCGEFMPS    S +  SL+C+AC CHRNFHR++   + +
Sbjct: 29  VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRDPSENLN 88

Query: 71  YHHLHQQAMMMLSGNSG------------SAHSASDEKVERRGVVVGRPAPADDD----- 113
           +  L    +   SG               S ++++        +  G P P+D D     
Sbjct: 89  F--LTAPPISSPSGTESPPSRHVSSPVPCSYYTSAPPHHVILSLSSGFPGPSDQDPTVVR 146

Query: 114 -DHQKRMMMRKRFRT 127
            ++  R  MRKR RT
Sbjct: 147 SENSSRGAMRKRTRT 161

Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
224129806	271	predicted protein [Populus trichocarpa]	0.866	0.405	0.507	2e-29
164562219	258	zinc finger-homeodomain protein 2 [Sarum	0.795	0.391	0.598	8e-26
224119848	177	predicted protein [Populus trichocarpa]	0.779	0.559	0.507	8e-26
255569812	311	transcription factor, putative [Ricinus	0.850	0.347	0.434	7e-25
359486213	281	PREDICTED: ZF-HD homeobox protein At4g24	0.866	0.391	0.440	3e-24
356522109	283	PREDICTED: ZF-HD homeobox protein At4g24	0.496	0.222	0.782	6e-24
224168739	175	predicted protein [Populus trichocarpa]	0.834	0.605	0.5	1e-23
224080087	212	predicted protein [Populus trichocarpa]	0.850	0.509	0.435	1e-23
356563811	286	PREDICTED: ZF-HD homeobox protein At4g24	0.921	0.409	0.454	2e-23
116783202	249	unknown [Picea sitchensis]	0.984	0.502	0.418	3e-23

>gi|224129806|ref|XP_002328807.1| predicted protein [Populus trichocarpa] gi|222839105|gb|EEE77456.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 91/142 (64%), Gaps = 32/142 (22%)

Query: 8   PCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI-- 65
           P KK+VRY+ECLKNHAA++GG+ATDGCGEFMPSGEEGSIE+L CSACNCHRNFHRKEI  
Sbjct: 72  PYKKMVRYRECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIEG 131

Query: 66  ------------GCDAHYHHLHQQAM--------MMLSGNSGSAHSASDEKVERRGVVVG 105
                           H++ L ++ +        M++S N GS  S SDE+ +  GV++ 
Sbjct: 132 EHTSCTGDHCYHNSPVHFNRLGRKVILASAPHHQMIMSYNMGSLPSESDEQEDGGGVLMA 191

Query: 106 RPAPADDDDHQKRMMMRKRFRT 127
           RPA           +M+KRFRT
Sbjct: 192 RPA----------QLMKKRFRT 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164562219|gb|ABY61024.1| zinc finger-homeodomain protein 2 [Saruma henryi]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 1/102 (0%)

Query: 8   PCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGC 67
           P KKVVRY+ECLKNHAA++GG+ATDGCGEFMPSGEEGSIE+LKCSAC+CHRNFHRKEI  
Sbjct: 54  PYKKVVRYRECLKNHAASMGGNATDGCGEFMPSGEEGSIEALKCSACSCHRNFHRKEIEG 113

Query: 68  DAHYHHLHQQAMMMLSGNSGSAHSASDEKVERRGVVVGRPAP 109
           +  +   H +A  ++ G  G   + SD      G ++ RP P
Sbjct: 114 ETSWDCCHLKARKVV-GQKGVLIAGSDAFGYPTGSLIPRPHP 154

Source: Saruma henryi

Species: Saruma henryi

Genus: Saruma

Family: Aristolochiaceae

Order: Piperales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119848|ref|XP_002331077.1| predicted protein [Populus trichocarpa] gi|222872805|gb|EEF09936.1| predicted protein [Populus trichocarpa]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 69/136 (50%), Positives = 83/136 (61%), Gaps = 37/136 (27%)

Query: 14  RYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCD----- 68
           RY+ECLKNHAAA+GG+ATDGCGEFMPSGEEGSIE+L CSACNCHRNFHR+EI  +     
Sbjct: 1   RYRECLKNHAAAMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRREIEGEHTSSP 60

Query: 69  -----------------AHYHHLHQQAMMMLSGNSGSAHSASDEKVERRGVVVGRPAPAD 111
                            A  HH      M++S N GS  S SDE+ +  GVV+ RPA   
Sbjct: 61  EALGYPTATGTLVPPRAAAPHH-----QMIMSYNMGSLPSESDEQEDGGGVVMARPA--- 112

Query: 112 DDDHQKRMMMRKRFRT 127
                   +M+KR+RT
Sbjct: 113 -------QLMKKRYRT 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569812|ref|XP_002525870.1| transcription factor, putative [Ricinus communis] gi|223534875|gb|EEF36564.1| transcription factor, putative [Ricinus communis]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/161 (43%), Positives = 87/161 (54%), Gaps = 53/161 (32%)

Query: 10  KKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI---- 65
           KK+V+YKECLKNHAAA+GG+ATDGCGEFMPSGEEGSIE+L CSACNCHRNFHRKEI    
Sbjct: 84  KKMVKYKECLKNHAAAMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDGET 143

Query: 66  -GCDAHYHHLHQ--------------------------------------QAMMMLSGNS 86
             CD +  H ++                                        M+M     
Sbjct: 144 NPCDYYPPHFNRVGRKVILGHHKNILAPEALGYPTGTGTLVPSRATVAPHHQMIMSYNMG 203

Query: 87  GSAHSASDEKVERRGVVVGRPAPADDDDHQKRMMMRKRFRT 127
           GS  S SDE+ +  GVV+ RP          + +++KR+RT
Sbjct: 204 GSLPSESDEQEDGGGVVMARP----------QQLVKKRYRT 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486213|ref|XP_003633412.1| PREDICTED: ZF-HD homeobox protein At4g24660 [Vitis vinifera]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 87/159 (54%), Gaps = 49/159 (30%)

Query: 8   PCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI-- 65
           P KK VRY+ECLKNHAAA+GG+ATDGCGEFMP GEEG++E+L CSAC+CHRNFHRKE+  
Sbjct: 68  PYKKAVRYRECLKNHAAAMGGNATDGCGEFMPGGEEGTLEALNCSACHCHRNFHRKEVEG 127

Query: 66  ---GCD-AHYHHLHQQA---------------------------------MMMLSGNSGS 88
               CD  H  HL++                                    M++S N GS
Sbjct: 128 ERSSCDCFHSPHLNRVGRKVILGHHKNIIGPEALGYPTGTLISSRPPPPHQMIMSYNMGS 187

Query: 89  AHSASDEKVERRGVVVGRPAPADDDDHQKRMMMRKRFRT 127
             S SDE+ +  G VV RP            +++KRFRT
Sbjct: 188 LPSESDEQEDGGGGVVARPP----------QLVKKRFRT 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522109|ref|XP_003529692.1| PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 61/69 (88%), Gaps = 6/69 (8%)

Query: 10  KKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI---- 65
           KKVVRY+ECLKNHAAA+GG+ATDGCGEFMPSGEEG+IE+L CSAC+CHRNFHRKE+    
Sbjct: 64  KKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEP 123

Query: 66  GCDAHYHHL 74
            CD  YHHL
Sbjct: 124 SCD--YHHL 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224168739|ref|XP_002339186.1| predicted protein [Populus trichocarpa] gi|222874604|gb|EEF11735.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/128 (50%), Positives = 81/128 (63%), Gaps = 22/128 (17%)

Query: 12  VVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI-----G 66
           +VRY+ECLKNHAAA+GG+ATDGCGEFMPSGEEGSIE+L CSACNCHRNFHR+EI      
Sbjct: 1   MVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRREIEGEHTS 60

Query: 67  CDAHYH---HLHQQAMMMLSGNSGSAHS----ASDEKVERRGVVVGRPAPADDDDHQKRM 119
           C   YH   H ++    ++ G+  S  +          +  GVV+ RPA           
Sbjct: 61  CGDCYHNNPHFNRVGRKVILGHQTSILAPEALGYPTATDGGGVVMARPA----------Q 110

Query: 120 MMRKRFRT 127
           +M+KR+RT
Sbjct: 111 LMKKRYRT 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080087|ref|XP_002306012.1| predicted protein [Populus trichocarpa] gi|222848976|gb|EEE86523.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/163 (43%), Positives = 85/163 (52%), Gaps = 55/163 (33%)

Query: 10  KKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI---- 65
           KKV+RYKECLKNHAAAIGG+ATDGCGEF+P GEEGS+E+LKCSACNCHRNFHRKEI    
Sbjct: 1   KKVMRYKECLKNHAAAIGGNATDGCGEFIPGGEEGSLEALKCSACNCHRNFHRKEIDGEC 60

Query: 66  GCDAHYHH---------------------------------------LHQQAMMMLSGNS 86
             D H+H+                                        HQ  +   +G +
Sbjct: 61  SYDCHHHYPVMSNIGSGRLISGHHNGIIGSPPQGYPTSSFISSRAPPPHQVVVSYKNGGA 120

Query: 87  GSAHSASDEKVERR--GVVVGRPAPADDDDHQKRMMMRKRFRT 127
            +  S SDEK E    G++  RP             +RKRFRT
Sbjct: 121 NAITSESDEKEEDNGGGILTTRPVEK----------LRKRFRT 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563811|ref|XP_003550152.1| PREDICTED: ZF-HD homeobox protein At4g24660-like [Glycine max]

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/143 (45%), Positives = 81/143 (56%), Gaps = 26/143 (18%)

Query: 10  KKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCDA 69
           KKVVRY+ECLKNHAAA+GG+ATDGCGEFMPSG+EGSIE+L CSAC+CHRNFHRKE+  + 
Sbjct: 71  KKVVRYRECLKNHAAAMGGNATDGCGEFMPSGKEGSIEALNCSACHCHRNFHRKEVEGEP 130

Query: 70  HYHHL-----------HQQAM--------------MMLSGNSGSAHSASDEKVERRGVVV 104
             HHL           H +A+              M++  N G  H    E  E+     
Sbjct: 131 Q-HHLNINRRRLILGPHPEALGYPTAAARSVPPHQMIMPYNIGIGHHLPSESDEQEDAAA 189

Query: 105 GRPAPADDDDHQKRMMMRKRFRT 127
           G              +++KRFRT
Sbjct: 190 GAGMVQLSSRPSSAQLVKKRFRT 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116783202|gb|ABK22835.1| unknown [Picea sitchensis]

 Score =  113 bits (282), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/148 (41%), Positives = 90/148 (60%), Gaps = 23/148 (15%)

Query: 3   EEQKNPCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHR 62
           EE++   KK VRY+EC+KNHAAA+GGSATDGCGEFMPSGEEG++E+LKCSAC CHRNFHR
Sbjct: 43  EEEQIKSKKTVRYRECMKNHAAAMGGSATDGCGEFMPSGEEGTLEALKCSACECHRNFHR 102

Query: 63  KEI----GCDAH----YHHLHQQAMMMLSGNSGSAHSASD----------EKVERRGVVV 104
           +E+     CD        +  +  +++ S   G+A  A D           ++  + ++ 
Sbjct: 103 REVEGEPSCDCFRIRDQLNRKRSGVLVSSRAQGAAAIAPDPFAFPPNNLLPRLPPQAIMS 162

Query: 105 GRPAPADDDDHQKRMM-----MRKRFRT 127
               P++ D+ +   +     ++KRFRT
Sbjct: 163 YSTGPSESDELEGTFLSRPAILKKRFRT 190

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2012602	312	HB31 "AT1G14440" [Arabidopsis	0.440	0.179	0.821	4.2e-24
TAIR|locus:2025121	309	HB33 "AT1G75240" [Arabidopsis	0.590	0.242	0.597	8.7e-24
TAIR|locus:2065304	310	HB21 "homeobox protein 21" [Ar	0.417	0.170	0.811	3.4e-22
TAIR|locus:2150871	271	HB30 "AT5G15210" [Arabidopsis	0.496	0.232	0.6	2.9e-21
TAIR|locus:2121989	220	HB22 "AT4G24660" [Arabidopsis	0.456	0.263	0.688	4.4e-20
TAIR|locus:2168240	279	HB25 "AT5G65410" [Arabidopsis	0.480	0.218	0.625	1.9e-19
TAIR|locus:2062141	262	HB24 "AT2G18350" [Arabidopsis	0.409	0.198	0.730	8.3e-19
TAIR|locus:2167052	334	HB23 "AT5G39760" [Arabidopsis	0.480	0.182	0.6	1.6e-18
TAIR|locus:2077957	249	HB28 "homeobox protein 28" [Ar	0.937	0.477	0.357	4.6e-18
TAIR|locus:2026734	242	ZFHD1 "AT1G69600" [Arabidopsis	0.409	0.214	0.666	8.9e-18

TAIR|locus:2012602 HB31 "AT1G14440" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 46/56 (82%), Positives = 54/56 (96%)

Query:    10 KKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI 65
             K +++YKECLKNHAAA+GG+ATDGCGEFMPSGE+GSIE+L CSACNCHRNFHRKE+
Sbjct:    85 KPMIKYKECLKNHAAAMGGNATDGCGEFMPSGEDGSIEALTCSACNCHRNFHRKEV 140

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2025121 HB33 "AT1G75240" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 52/87 (59%), Positives = 63/87 (72%)

Query:     1 DHEEQKNP--------CKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCS 52
             DH + K+P         K  VRY+ECLKNHAA++GGS  DGCGEFMPSGEEG+IE+L+C+
Sbjct:    54 DHHQSKSPSSFSISAAAKPTVRYRECLKNHAASVGGSVHDGCGEFMPSGEEGTIEALRCA 113

Query:    53 ACNCHRNFHRKE---IGC-DAHYHHLH 75
             AC+CHRNFHRKE   +G  D   HH H
Sbjct:   114 ACDCHRNFHRKEMDGVGSSDLISHHRH 140

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2065304 HB21 "homeobox protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 43/53 (81%), Positives = 49/53 (92%)

Query:    12 VVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKE 64
             V++YKECLKNHAA +GG+A DGCGEFMPSGEEGSIE+L CS CNCHRNFHR+E
Sbjct:    84 VIKYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEALTCSVCNCHRNFHRRE 136

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IPI

TAIR|locus:2150871 HB30 "AT5G15210" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
 Identities = 39/65 (60%), Positives = 43/65 (66%)

Query:     2 HEEQKNPCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIE--SLKCSACNCHRN 59
             H    +    V  YKECLKNHAA IGG A DGCGEFMPS    S +  SL C+AC CHRN
Sbjct:    43 HHHLASEAVAVATYKECLKNHAAGIGGHALDGCGEFMPSPSFNSNDPASLTCAACGCHRN 102

Query:    60 FHRKE 64
             FHR+E
Sbjct:   103 FHRRE 107

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2121989 HB22 "AT4G24660" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 42/61 (68%), Positives = 50/61 (81%)

Query:    13 VRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKE---IGCDA 69
             +RY+ECLKNHA  IGG A DGC EFMPSGE+G++++LKC+AC CHRNFHRKE   IG  A
Sbjct:    47 IRYRECLKNHAVNIGGHAVDGCCEFMPSGEDGTLDALKCAACGCHRNFHRKETESIGGRA 106

Query:    70 H 70
             H
Sbjct:   107 H 107

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2168240 HB25 "AT5G65410" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query:    14 RYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEIGCDAHYHH 73
             R++ECLKN A  IGG A DGCGEFMP+G EG+I++LKC+AC CHRNFHRKE+    ++HH
Sbjct:    74 RFRECLKNQAVNIGGHAVDGCGEFMPAGIEGTIDALKCAACGCHRNFHRKEL---PYFHH 130

Query:    74 LHQQ 77
                Q
Sbjct:   131 APPQ 134

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2062141 HB24 "AT2G18350" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 38/52 (73%), Positives = 45/52 (86%)

Query:    14 RYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI 65
             RY+EC KNHAA+ GG   DGCGEFM SGEEG++ESL C+AC+CHR+FHRKEI
Sbjct:    81 RYRECQKNHAASSGGHVVDGCGEFMSSGEEGTVESLLCAACDCHRSFHRKEI 132

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2167052 HB23 "AT5G39760" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query:     2 HEEQKNPCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIE--SLKCSACNCHRN 59
             H    +P   +  YKECLKNHAAA+GG A DGCGEFMPS    S +  SLKC+AC CHRN
Sbjct:    45 HHHHHHPL--LFTYKECLKNHAAALGGHALDGCGEFMPSPSSISSDPTSLKCAACGCHRN 102

Query:    60 FHRKE 64
             FHR++
Sbjct:   103 FHRRD 107

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2077957 HB28 "homeobox protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 45/126 (35%), Positives = 71/126 (56%)

Query:     1 DHEEQKNPCKKVVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNF 60
             ++++ K    +  +Y+EC KNHAA+ GG   DGC EFM  GEEG++ +LKC+ACNCHR+F
Sbjct:    46 ENQKPKTRVDQGAKYRECQKNHAASTGGHVVDGCCEFMAGGEEGTLGALKCAACNCHRSF 105

Query:    61 HRKEIGCDAHYHHLH--QQAMMMLSGNSGSAHSASDEKVEXXXXXXXXXXXXDDDDHQKR 118
             HRKE+     Y H +  Q   +M++    S++S+   +V               +D +K 
Sbjct:   106 HRKEV-----YGHRNSKQDHQLMITPAFYSSNSSYKPRVMHPTGEIGRRTSSSSEDMKKI 160

Query:   119 MMMRKR 124
             +  R +
Sbjct:   161 LSHRNQ 166

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2026734 ZFHD1 "AT1G69600" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 36/54 (66%), Positives = 42/54 (77%)

Query:    13 VRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIE--SLKCSACNCHRNFHRKE 64
             V YKECLKNHAA +GG A DGCGEFMPS    S +  SL+C+AC CHRNFHR++
Sbjct:    29 VCYKECLKNHAANLGGHALDGCGEFMPSPTATSTDPSSLRCAACGCHRNFHRRD 82

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
pfam04770	60	pfam04770, ZF-HD_dimer, ZF-HD protein dimerisation	1e-30
TIGR01566	53	TIGR01566, ZF_HD_prot_N, ZF-HD homeobox protein Cy	6e-25

>gnl|CDD|218256 pfam04770, ZF-HD_dimer, ZF-HD protein dimerisation region

 Score =  103 bits (260), Expect = 1e-30
 Identities = 42/54 (77%), Positives = 48/54 (88%)

Query: 12 VVRYKECLKNHAAAIGGSATDGCGEFMPSGEEGSIESLKCSACNCHRNFHRKEI 65
           VRY+ECLKNHAA+IGG A DGCGEFMPSGEEG+ +SLKC+AC CHRNFHR+E 
Sbjct: 3  GVRYRECLKNHAASIGGHAVDGCGEFMPSGEEGTPDSLKCAACGCHRNFHRREP 56

This family of proteins has are plant transcription factors, and have been named ZF-HD for zinc finger homeodomain proteins, on the basis of similarity to proteins of known structure. This region is thought to be involved in the formation of homo and heterodimers, and may form a zinc finger. Length = 60

>gnl|CDD|130629 TIGR01566, ZF_HD_prot_N, ZF-HD homeobox protein Cys/His-rich dimerization domain

 Score = 89.1 bits (221), Expect = 6e-25
 Identities = 42/53 (79%), Positives = 44/53 (83%), Gaps = 1/53 (1%)

Query: 14 RYKECLKNHAAAIGGSATDGCGEFMP-SGEEGSIESLKCSACNCHRNFHRKEI 65
           YKECLKNHAA+IGG A DGCGEFMP SGEEG  ESL C+AC CHRNFHRKE 
Sbjct: 1  LYKECLKNHAASIGGHALDGCGEFMPSSGEEGDPESLTCAACGCHRNFHRKEP 53

This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
PF04770	60	ZF-HD_dimer: ZF-HD protein dimerisation region; In	100.0
TIGR01566	53	ZF_HD_prot_N ZF-HD homeobox protein Cys/His-rich d	100.0

>PF04770 ZF-HD_dimer: ZF-HD protein dimerisation region; InterPro: IPR006456 The homeodomain (HD) is a 60-amino acid DNA-binding domain found in many transcription factors

Probab=100.00  E-value=1.7e-40  Score=224.41  Aligned_cols=58  Identities=76%  Similarity=1.422  Sum_probs=55.3

Q ss_pred             ceeehHHHhhhhhhhcCCccccCccccccC-CCCCCccccccccccccccccccccCCC
Q 041672           11 KVVRYKECLKNHAAAIGGSATDGCGEFMPS-GEEGSIESLKCSACNCHRNFHRKEIGCD   68 (127)
Q Consensus        11 ~~v~Y~EC~kNHAa~~GghavDGCgEFmps-g~~gt~~aL~CaACgCHRnFHRre~~~~   68 (127)
                      .+|+|+||||||||+||||+||||+||||+ +++|++++|+||||||||||||||++++
T Consensus         2 ~~v~Y~EC~kNHAa~~Gg~a~DGCgEFm~~~g~eg~~~al~CaACgCHRnFHRre~~~e   60 (60)
T PF04770_consen    2 KVVRYRECLKNHAASIGGHAVDGCGEFMPSPGEEGTPEALKCAACGCHRNFHRREVEGE   60 (60)
T ss_pred             CceeHHHHHhhHhHhhCCcccccccccccCCCCCCCcccceecccCcchhcccCCcCCC
Confidence            479999999999999999999999999999 8899999999999999999999998764

HD-containing proteins are found in diverse organisms such as humans, Drosophila, nematode worms, and plants, where they play important roles in development. Zinc-finger-homeodomain (ZF- HD) subfamily proteins have only been identified in plants, and likely play plant specific roles. ZF-HD proteins are expressed predominantly or exclusively in floral tissue, indicating a likely regulatory role during floral development []. The ZF-HD class of homeodomain proteins may also be involved in the photosynthesis-related mesophyll-specific gene expression of phosphoenolpyruvate carboxylase in C4 species [] and in pathogen signaling and plant defense mechanisms []. These proteins share three domains of high sequence similarity: the homeodomain (II) located at the carboxy-terminus, and two other segments (Ia and Ib) located in the amino-terminal part. These N-terminal domains contain five conserved cysteine residues and at least three conserved histidine residues whose spacing ressembles zinc-binding domains involved in dimerization of transcription factors. Although the two domains contain at least eight potential zinc-binding amino-acids, the unique spacing of the conserved cysteine and histidine residues within domain Ib suggests that both domains form one rather than two zinc finger structures. The two conserved motifs Ia and Ib constitute a dimerization domain which is sufficient for the formation of homo- and heterodimers []. This entry represents the N-terminal Cysteine/Histidine-rich dimerization domain. The companion ZF-HD homeobox domain is described in IPR006455 from INTERPRO.

>TIGR01566 ZF_HD_prot_N ZF-HD homeobox protein Cys/His-rich dimerization domain

Probab=100.00  E-value=8.5e-40  Score=216.67  Aligned_cols=52  Identities=81%  Similarity=1.421  Sum_probs=50.1

Q ss_pred             ehHHHhhhhhhhcCCccccCcccccc-CCCCCCcccccccccccccccccccc
Q 041672           14 RYKECLKNHAAAIGGSATDGCGEFMP-SGEEGSIESLKCSACNCHRNFHRKEI   65 (127)
Q Consensus        14 ~Y~EC~kNHAa~~GghavDGCgEFmp-sg~~gt~~aL~CaACgCHRnFHRre~   65 (127)
                      +|+||||||||+|||||||||+|||| +++++++++|+||||||||||||||+
T Consensus         1 ~Y~EC~kNHAa~~Gg~a~DGCgEFmps~g~~~~~~al~CaACgCHRnFHRre~   53 (53)
T TIGR01566         1 LYKECLKNHAASIGGHALDGCGEFMPSSGEEGDPESLTCAACGCHRNFHRKEP   53 (53)
T ss_pred             CHHHHHHhhHHHhCCcccccccccccCCCCCCCCcceeeeecCcccccccCCC
Confidence            69999999999999999999999999 68899999999999999999999985

This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00