Citrus Sinensis ID: 041683

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740---
Protein Sequence
LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPLSNCTEKNVLVPEDENGDGNEDDDEDGVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGCLGSVRLREATARAAVAEAGSEEVVVRQLKLIIAITRLQTII
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccHHccccccccEEEccccccccccccccccccccccEEEcccccccccccHHHHHHcccccccccEEEcccccccEEccccccccccccEEEcccccccccccccccccccccEEEcccccccEEEcHHHHcccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHHHcccccEEEccccccEEEcccccccccccccccccccccEEEcccccccEEcccHHHccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEEccHHHHHcccccEEEcccccccccccHHHHHccccccEEEcccccccEEccccccccccccEEEcccccccccccHHccccccccccccccccEEEEcccccccccEEEEEEEEEEcccccEEccccccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEEEEHHHHHHHHHHccccEEEEEccHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEccccccccccccHHHccccccEEEEcccccccccccHHHcccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHcccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHHHcccEEEcccccccccccHHHccHHHccccccccccEEEEEccccccccccHHHHHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEcccccccccccHcHcccHHHHHHcccccccccccccccccccEEEEEccccccccccHHHcccccEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccHHHccHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEccccEEEEEEEEEEEEHEHHHHcc
Coil and Loop (DISEMBL)
lsgnqfqgqipsrlgnltslkyldlssnelNSTVLGWLSKVNDLEFLSVYSNRLQgnvsslglenLTSIKRLYLsendelggkiptsfgklckltsfSMRFTKLSQDISEILGIFSACVANEleslrlgssqiFGHLTNQLRRFKRlnsldlsntildgsipfslgqisnleyldlsnnklngtvseihfvNLTKLAFFRANGNslifkinpnwvppfqLTVLELrschlgprfplwlqsqrelndldisstrisakiprgfwNSIYQYFYLNIsgnqiyggipkfdnpsmplittpsdllgpifdlsnnalsgsIFHLICQGENFSNNIEFLKLSknnfsgdipdcWMNWLRLRALNlghnnftgslpmsIGTLSSLLSLNLRNnilsgiiptsfknfsslevldlgenelvgsipswiGERFSILKILNlrsnkfhgdfpiqLCGLAFLQILDVAsnslsgtiprCINNlsamaitdsYDQAVILYSSLRsegqseifeDASLVMKGVLVEYNSILNLVRSIdvsknifsgeipvevtnlqglqslnlshnlltgripdnigVMRSIESLDLsanqlsgqipqsmsnlsflnhlnlsnnnlvgkipsstqlqsfgassfagndlcgdplsncteknvlvpedengdgnedddedgVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHfldrlgdgclgsVRLREATARAAVAEAGSEEVVVRQLKLIIAITRLQTII
Flexible Loop (DISEMBL)
lsgnqfqgqipsrlgnLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQgnvsslglenLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPLSNCTEKNVLvpedengdgnedDDEDGVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGCLGSVRLREATARAavaeagseevvvRQLKLIIAitrlqtii
Low Complexity Region (SEG)
LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMsigtlssllslnlrnnilsgiiPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQsmsnlsflnhlnlsnnnlVGKIPSSTQLQSFGASSFAGNDLCGDPLSNCTEKNVLVPedengdgnedddedgVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGCLGSvrlreataraavaeagseevvvrQLKLIIAITRLQTII
Disordered region (IsUnstruct)
***************NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESL*****************LSFLNHLNLSNNNLVG*******************DLCG****************************GVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGCLGSVRLREATARAAVAEAGSEEVVVRQLKLIIAITRLQT**
Disordered Region (DISOPRED)
LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITD***Q*VILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGD*****************************DWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGCLGSVRLREATA**********EVVVRQLKLIIAITRLQT**
Disordered Region (DISEMBL)
********QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPLSNCTEKNVLVPEDENGDGNEDDDEDGVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGCLGSVRLREA*************VVVRQLKLIIAITRLQTII
Disordered Region (DISPRO)
**GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPLSNCTEKNVLVPEDENGDGNEDDDEDGVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGCLGSVRLREATARAAVAEAGSEEVVVRQLKLIIAITRLQTII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPLSNCTEKNVLVPEDENGDGNEDDDEDGVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGCLGSVRLREATARAAVAEAGSEEVVVRQLKLIIAITRLQTII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	743	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.786	0.466	0.338	2e-66
Q9C9H7	847	Receptor-like protein 12	no	no	0.865	0.759	0.297	3e-64
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.796	0.473	0.320	3e-62
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.804	0.542	0.314	5e-57
Q9FL28	1173	LRR receptor-like serine/	no	no	0.834	0.528	0.298	8e-57
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.780	0.486	0.308	3e-55
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.870	0.569	0.290	2e-54
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.768	0.518	0.313	4e-54
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.736	0.478	0.292	1e-49
C0LGV1	1135	LRR receptor-like serine/	no	no	0.757	0.496	0.302	3e-49

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  254 bits (648), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 315/639 (49%), Gaps = 55/639 (8%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L GNQ QG IP RL  L +L+ LDLSSN L   +     ++N LEFL +  NRL G++  
Sbjct: 271 LIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPK 330

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
               N TS+K+L+LSE  +L G+IP        L    +    L+  I + L  F     
Sbjct: 331 TICSNNTSLKQLFLSET-QLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSL--FQLV-- 385

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
            EL +L L ++ + G L++ +     L    L +  L+G +P  +G +  LE + L  N+
Sbjct: 386 -ELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENR 444

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
            +G +  +   N T+L      GN L  +I  +      LT L LR   L    P  L +
Sbjct: 445 FSGEMP-VEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGN 503

Query: 241 QRELNDLDISSTRISAKIPR--GFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
             ++  +D++  ++S  IP   GF  ++  +   N   N + G +P        LI   +
Sbjct: 504 CHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYN---NSLQGNLPD------SLINLKN 554

Query: 299 DLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALN 358
             L  I + S+N  +GSI  L       S ++     ++N F GDIP        L  L 
Sbjct: 555 --LTRI-NFSSNKFNGSISPLCGSSSYLSFDV-----TENGFEGDIPLELGKSTNLDRLR 606

Query: 359 LGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418
           LG N FTG +P + G +S L  L++  N LSGIIP        L  +DL  N L G IP+
Sbjct: 607 LGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPT 666

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM-AI 477
           W+G +  +L  L L SNKF G  P ++  L  +  L +  NSL+G+IP+ I NL A+ A+
Sbjct: 667 WLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNAL 725

Query: 478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV 537
               +Q                       + G L      L+ +  + +S+N  +GEIPV
Sbjct: 726 NLEENQ-----------------------LSGPLPSTIGKLSKLFELRLSRNALTGEIPV 762

Query: 538 EVTNLQGLQS-LNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHL 596
           E+  LQ LQS L+LS+N  TGRIP  I  +  +ESLDLS NQL G++P  + ++  L +L
Sbjct: 763 EIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYL 822

Query: 597 NLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGDPLSNC 634
           NLS NNL GK+    Q   + A +F GN  LCG PLS+C
Sbjct: 823 NLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  247 bits (630), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 208/699 (29%), Positives = 341/699 (48%), Gaps = 56/699 (8%)

Query: 4   NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL 63
           N+F G+IP+ +GNL  L++L L++N L   +   L  ++ L  L ++SNRL G +    +
Sbjct: 144 NKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPD-SI 202

Query: 64  ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN-- 121
            +L  ++ L L+ N+ L G+IP+S G L  L    +   +L       +G   A + N  
Sbjct: 203 GDLKQLRNLSLASNN-LIGEIPSSLGNLSNLVHLVLTHNQL-------VGEVPASIGNLI 254

Query: 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKL 181
           EL  +   ++ + G++        +L+   LS+     + PF +    NLEY D+S N  
Sbjct: 255 ELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSF 314

Query: 182 NGTVSE--IHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
           +G   +  +   +L  +          I   N +     Q  +L     H GP  P  + 
Sbjct: 315 SGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLH-GP-IPESIS 372

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK-------------- 285
               L +LDIS    +  IP    + +    +L++S N + G +P               
Sbjct: 373 RLLNLEELDISHNNFTGAIPPTI-SKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNS 431

Query: 286 ---FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSG 342
              F+N      T+  + L    DL++N+  G I ++IC+     +++ FL LS N FSG
Sbjct: 432 FSSFEN------TSQEEALIEELDLNSNSFQGPIPYMICK----LSSLGFLDLSNNLFSG 481

Query: 343 DIPDCWMNWL-RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSS 401
            IP C  N+   ++ LNLG NNF+G+LP      + L+SL++ +N L G  P S  N  +
Sbjct: 482 SIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKA 541

Query: 402 LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAF--LQILDVASN 459
           LE++++  N++    PSW+ E    L +LNLRSNKF+G    +   + F  L+I+D++ N
Sbjct: 542 LELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHN 600

Query: 460 SLSGTIP-RCINNLSAMA-ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI 517
           + SGT+P    +N   M  +T+  DQ    Y +         + +  +V KGV + +  I
Sbjct: 601 NFSGTLPPYYFSNWKDMTTLTEEMDQ----YMTEFWRYADSYYHEMEMVNKGVDMSFERI 656

Query: 518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSAN 577
               R+ID S N  +G IP  +  L+ L+ LNLS N  T  IP  +  +  +E+LD+S N
Sbjct: 657 RRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRN 716

Query: 578 QLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPLSNCTEK 637
           +LSGQIPQ ++ LSFL+++N S+N L G +P  TQ Q    SSF  N         C + 
Sbjct: 717 KLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDT 776

Query: 638 NVLVPEDENGDGNEDDDEDGVDWLLYISMALGFVVGFWC 676
             L P  +  +   + +E+  +W   ++ A+ +  G  C
Sbjct: 777 GALNPTSQLPEDLSEAEENMFNW---VAAAIAYGPGVLC 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  240 bits (613), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 216/673 (32%), Positives = 326/673 (48%), Gaps = 81/673 (12%)

Query: 4   NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL 63
           N   G IP+ LG L +L+ L+L++N L   +   L +++ L++LS+ +N+LQG +    L
Sbjct: 225 NMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPK-SL 283

Query: 64  ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANE- 122
            +L +++ L LS N+ L G+IP  F  + +L    +    LS  + +     S C  N  
Sbjct: 284 ADLGNLQTLDLSANN-LTGEIPEEFWNMSQLLDLVLANNHLSGSLPK-----SICSNNTN 337

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
           LE L L  +Q+ G +  +L + + L  LDLSN  L GSIP +L ++  L  L L NN L 
Sbjct: 338 LEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLE 397

Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVL-------------ELRSC- 228
           GT+S     NLT L +     N+L  K+        +L VL             E+ +C 
Sbjct: 398 GTLSP-SISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCT 456

Query: 229 ----------HLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQ 278
                     H     P  +   +ELN L +    +   +P    N  +Q   L+++ NQ
Sbjct: 457 SLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGN-CHQLNILDLADNQ 515

Query: 279 IYGGIPK---FDNPSMPLITTPSDLLGPIFD------------LSNNALSGSIFHLICQG 323
           + G IP    F      L+   + L G + D            LS+N L+G+I H +C  
Sbjct: 516 LSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGS 574

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
            ++ +      ++ N F  +IP    N   L  L LG N  TG +P ++G +  L  L++
Sbjct: 575 SSYLS----FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDM 630

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
            +N L+G IP        L  +DL  N L G IP W+G + S L  L L SN+F    P 
Sbjct: 631 SSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPT 689

Query: 444 QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA 503
           +L     L +L +  NSL+G+IP+ I NL A+ + +                        
Sbjct: 690 ELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQ------------------- 730

Query: 504 SLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQS-LNLSHNLLTGRIPDN 562
                G L +    L+ +  + +S+N  +GEIPVE+  LQ LQS L+LS+N  TG IP  
Sbjct: 731 ---FSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPST 787

Query: 563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFA 622
           IG +  +E+LDLS NQL+G++P S+ ++  L +LN+S NNL GK+    Q   + A SF 
Sbjct: 788 IGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFL 845

Query: 623 GND-LCGDPLSNC 634
           GN  LCG PLS C
Sbjct: 846 GNTGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  223 bits (567), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 212/674 (31%), Positives = 320/674 (47%), Gaps = 76/674 (11%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N   G+IP  +GN +SL+ L L++N+ +  +   + K+  LE L +Y+NR+ G++  
Sbjct: 104 LSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLP- 162

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDI-SEILGIFSACV 119
           + + NL S+ +L    N+ + G++P S G L +LTSF      +S  + SEI G  S   
Sbjct: 163 VEIGNLLSLSQLVTYSNN-ISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCES--- 218

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLN------------------------SLDLSNT 155
              L  L L  +Q+ G L  ++   K+L+                        +L L   
Sbjct: 219 ---LVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKN 275

Query: 156 ILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWV 215
            L G IP  LG + +LE+L L  N LNGT+      NL+       + N+L  +I     
Sbjct: 276 QLVGPIPKELGDLQSLEFLYLYRNGLNGTIPR-EIGNLSYAIEIDFSENALTGEIPLELG 334

Query: 216 PPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNIS 275
               L +L L    L    P+ L + + L+ LD+S   ++  IP GF   +   F L + 
Sbjct: 335 NIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGF-QYLRGLFMLQLF 393

Query: 276 GNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKL 335
            N + G IP       P +   SDL   + D+S+N LSG I   +C      +N+  L L
Sbjct: 394 QNSLSGTIP-------PKLGWYSDLW--VLDMSDNHLSGRIPSYLC----LHSNMIILNL 440

Query: 336 SKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTS 395
             NN SG+IP        L  L L  NN  G  P ++    ++ ++ L  N   G IP  
Sbjct: 441 GTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPRE 500

Query: 396 FKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILD 455
             N S+L+ L L +N   G +P  IG   S L  LN+ SNK  G+ P ++     LQ LD
Sbjct: 501 VGNCSALQRLQLADNGFTGELPREIG-MLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLD 559

Query: 456 VASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYN 515
           +  N+ SGT+P  + +L                       Q E+ + ++  + G +    
Sbjct: 560 MCCNNFSGTLPSEVGSLY----------------------QLELLKLSNNNLSGTIPVAL 597

Query: 516 SILNLVRSIDVSKNIFSGEIPVEVTNLQGLQ-SLNLSHNLLTGRIPDNIGVMRSIESLDL 574
             L+ +  + +  N+F+G IP E+ +L GLQ +LNLS+N LTG IP  +  +  +E L L
Sbjct: 598 GNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFLLL 657

Query: 575 SANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGND-LCGDPLSN 633
           + N LSG+IP S +NLS L   N S N+L G IP    L++   SSF GN+ LCG PL+ 
Sbjct: 658 NNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGNEGLCGPPLNQ 714

Query: 634 CTEKNVLVPEDENG 647
           C +     P    G
Sbjct: 715 CIQTQPFAPSQSTG 728

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  222 bits (566), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 212/710 (29%), Positives = 323/710 (45%), Gaps = 90/710 (12%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L+ N F G+IP+ +G LT L  L L  N  + ++   + ++ ++ +L + +N L G+V  
Sbjct: 103 LTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVP- 161

Query: 61  LGLENLTSIKRLYLSEND--ELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
              E +     L L   D   L GKIP   G L  L  F      L+  I   +G  +  
Sbjct: 162 ---EEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLA-- 216

Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178
               L  L L  +Q+ G +         L SL L+  +L+G IP  +G  S+L  L+L +
Sbjct: 217 ---NLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYD 273

Query: 179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHL-GP----- 232
           N+L G +      NL +L   R   N L   I  +     QLT L L   HL GP     
Sbjct: 274 NQLTGKIPA-ELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEI 332

Query: 233 ------------------RFPLWLQSQRELNDLDISSTRISAKIPR--GFWNSIYQYF-- 270
                              FP  + + R L  L +    IS ++P   G   ++      
Sbjct: 333 GFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAH 392

Query: 271 -------------------YLNISGNQIYGGIPK-FDNPSMPLITT---------PSDLL 301
                               L++S NQ+ G IP+ F   ++  I+          P D+ 
Sbjct: 393 DNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIF 452

Query: 302 G----PIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRAL 357
                    +++N L+G++  LI + +     +  L++S N+ +G IP    N   L  L
Sbjct: 453 NCSNLETLSVADNNLTGTLKPLIGKLQK----LRILQVSYNSLTGPIPREIGNLKDLNIL 508

Query: 358 NLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP 417
            L  N FTG +P  +  L+ L  L + +N L G IP    +   L VLDL  N+  G IP
Sbjct: 509 YLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIP 568

Query: 418 SWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP-RCINNLSAMA 476
           +    +   L  L+L+ NKF+G  P  L  L+ L   D++ N L+GTIP   + +L  M 
Sbjct: 569 ALFS-KLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQ 627

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASL---VMKGVLVEYNSILNLVRSIDVSKNIFSG 533
           +  ++   ++  +  +  G+ E+ ++  L   +  G +         V ++D S+N  SG
Sbjct: 628 LYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSG 687

Query: 534 EIPVEVTNLQGLQ---SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL 590
            IP EV   QG+    SLNLS N  +G IP + G M  + SLDLS+N L+G+IP+S++NL
Sbjct: 688 HIPDEV--FQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANL 745

Query: 591 SFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCG--DPLSNCTEK 637
           S L HL L++NNL G +P S   ++  AS   GN DLCG   PL  CT K
Sbjct: 746 STLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTIK 795

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  217 bits (552), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 201/652 (30%), Positives = 307/652 (47%), Gaps = 72/652 (11%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L+GNQF G+IP  + NL  L+ LDLS N L   +   LS++  L +L +  N   G++  
Sbjct: 96  LAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPP 155

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
               +L ++  L +S N+ L G+IP   GKL  L++  M     S  I   +G  S    
Sbjct: 156 SFFISLPALSSLDVS-NNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISL--- 211

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
             L++    S    G L  ++ + K L  LDLS   L  SIP S G++ NL  L+L + +
Sbjct: 212 --LKNFAAPSCFFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAE 269

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           L G +      N   L     + NSL   + P  +    L         L    P W+  
Sbjct: 270 LIGLIPP-ELGNCKSLKSLMLSFNSLSGPL-PLELSEIPLLTFSAERNQLSGSLPSWMGK 327

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
            + L+ L +++ R S +IP           +L+++ N + G IP+             +L
Sbjct: 328 WKVLDSLLLANNRFSGEIPHEI-EDCPMLKHLSLASNLLSGSIPR-------------EL 373

Query: 301 LG----PIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP-DCWMNWLRLR 355
            G       DLS N LSG+I  +     +  +++  L L+ N  +G IP D W   L L 
Sbjct: 374 CGSGSLEAIDLSGNLLSGTIEEVF----DGCSSLGELLLTNNQINGSIPEDLWK--LPLM 427

Query: 356 ALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415
           AL+L  NNFTG +P S+   ++L+      N L G +P    N +SL+ L L +N+L G 
Sbjct: 428 ALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGE 487

Query: 416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP--------- 466
           IP  IG + + L +LNL +N F G  P++L     L  LD+ SN+L G IP         
Sbjct: 488 IPREIG-KLTSLSVLNLNANMFQGKIPVELGDCTSLTTLDLGSNNLQGQIPDKITALAQL 546

Query: 467 RCI----NNLSAM--AITDSYDQAVIL---------------YSSLRSEGQSEIFEDASL 505
           +C+    NNLS    +   +Y   + +               Y+ L      E+ E   L
Sbjct: 547 QCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNRLSGPIPEELGECLVL 606

Query: 506 V--------MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG 557
           V        + G +    S L  +  +D+S N  +G IP E+ N   LQ LNL++N L G
Sbjct: 607 VEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNG 666

Query: 558 RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609
            IP++ G++ S+  L+L+ N+L G +P S+ NL  L H++LS NNL G++ S
Sbjct: 667 HIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFNNLSGELSS 718

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  214 bits (545), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 216/744 (29%), Positives = 345/744 (46%), Gaps = 97/744 (13%)

Query: 5   QFQGQIPSRLGNLTSLKYLDLSSNELNSTV---LGWLSK--------------------- 40
           Q  G+I  R+  L  L+ L L SN  N T+   L + ++                     
Sbjct: 79  QLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRN 138

Query: 41  VNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR 100
           +  LE  +V  NRL G +  +GL   +S++ L +S N    G+IP+    L +L   ++ 
Sbjct: 139 LTSLEVFNVAGNRLSGEI-PVGLP--SSLQFLDISSNT-FSGQIPSGLANLTQLQLLNLS 194

Query: 101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGS 160
           + +L+ +I   LG   +     L+ L L  + + G L + +     L  L  S   + G 
Sbjct: 195 YNQLTGEIPASLGNLQS-----LQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGV 249

Query: 161 IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQ- 219
           IP + G +  LE L LSNN  +GTV    F N T L   +   N+    + P      + 
Sbjct: 250 IPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN-TSLTIVQLGFNAFSDIVRPETTANCRT 308

Query: 220 -LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQ 278
            L VL+L+   +  RFPLWL +   L +LD+S    S +IP    N + +   L ++ N 
Sbjct: 309 GLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGN-LKRLEELKLANNS 367

Query: 279 IYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKN 338
           + G IP        L          + D   N+L G I   +     +   ++ L L +N
Sbjct: 368 LTGEIPVEIKQCGSL---------DVLDFEGNSLKGQIPEFL----GYMKALKVLSLGRN 414

Query: 339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKN 398
           +FSG +P   +N  +L  LNLG NN  GS P+ +  L+SL  L+L  N  SG +P S  N
Sbjct: 415 SFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISN 474

Query: 399 FSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVAS 458
            S+L  L+L  N   G IP+ +G  F  L  L+L      G+ P++L GL  +Q++ +  
Sbjct: 475 LSNLSFLNLSGNGFSGEIPASVGNLFK-LTALDLSKQNMSGEVPVELSGLPNVQVIALQG 533

Query: 459 NSLSGTIPRCIN--------NLSAMAITDSYDQAV--------------ILYSSLRSE-- 494
           N+ SG +P   +        NLS+ + +    Q                 +  S+  E  
Sbjct: 534 NNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIG 593

Query: 495 --GQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSH 552
                E+ E  S  + G +    S L  ++ +D+ +N  SGEIP E++    L SL+L H
Sbjct: 594 NCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDH 653

Query: 553 NLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF-LNHLNLSNNNLVGKIPSST 611
           N L+G IP +   + ++  +DLS N L+G+IP S++ +S  L + N+S+NNL G+IP+S 
Sbjct: 654 NHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASL 713

Query: 612 QLQSFGASSFAGN-DLCGDPLSNCTEKNVLVPEDENGDGNEDDDEDGVDWLLYISMAL-- 668
             +    S F+GN +LCG PL+   E +         +G +   +     +L I MA   
Sbjct: 714 GSRINNTSEFSGNTELCGKPLNRRCESST-------AEGKKKKRK----MILMIVMAAIG 762

Query: 669 GFVVGFWC--FIGSLLINRRWRCK 690
            F++  +C  ++ +LL   +WR K
Sbjct: 763 AFLLSLFCCFYVYTLL---KWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  213 bits (543), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 204/651 (31%), Positives = 294/651 (45%), Gaps = 80/651 (12%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N   G IP ++GNL+SL+ L + SN L   +   ++K+  L  +    N   G + S
Sbjct: 146 LCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPS 205

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             +    S+K L L+EN  L G +P    KL  LT   +   +LS +I   +G  S    
Sbjct: 206 -EISGCESLKVLGLAEN-LLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNIS---- 259

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
             LE L L  +   G +  ++ +  ++  L L    L G IP  +G + +   +D S N+
Sbjct: 260 -RLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQ 318

Query: 181 LNGTVSEI--HFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL 238
           L G + +   H +NL  L  F                           +  LGP  P  L
Sbjct: 319 LTGFIPKEFGHILNLKLLHLFE--------------------------NILLGP-IPREL 351

Query: 239 QSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
                L  LD+S  R++  IP+      Y    L +  NQ+ G IP       PLI   S
Sbjct: 352 GELTLLEKLDLSINRLNGTIPQELQFLPY-LVDLQLFDNQLEGKIP-------PLIGFYS 403

Query: 299 DLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALN 358
           +    + D+S N+LSG I    C+ +        L L  N  SG+IP        L  L 
Sbjct: 404 NF--SVLDMSANSLSGPIPAHFCRFQTLI----LLSLGSNKLSGNIPRDLKTCKSLTKLM 457

Query: 359 LGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418
           LG N  TGSLP+ +  L +L +L L  N LSG I        +LE L L  N   G IP 
Sbjct: 458 LGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPP 517

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAIT 478
            IG    I+   N+ SN+  G  P +L     +Q LD++ N  SG I + +  L  + I 
Sbjct: 518 EIGNLTKIVG-FNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEIL 576

Query: 479 DSYDQAVILYSSLRSEGQ-SEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV 537
              D         R  G+    F D + +M+               + +  N+ S  IPV
Sbjct: 577 RLSDN--------RLTGEIPHSFGDLTRLME---------------LQLGGNLLSENIPV 613

Query: 538 EVTNLQGLQ-SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHL 596
           E+  L  LQ SLN+SHN L+G IPD++G ++ +E L L+ N+LSG+IP S+ NL  L   
Sbjct: 614 ELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLIC 673

Query: 597 NLSNNNLVGKIPSSTQLQSFGASSFAGND-LCGDPLSNCTEKNVLVPEDEN 646
           N+SNNNLVG +P +   Q   +S+FAGN  LC    S+C     LVP  ++
Sbjct: 674 NISNNNLVGTVPDTAVFQRMDSSNFAGNHGLCNSQRSHCQP---LVPHSDS 721

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  198 bits (504), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 190/650 (29%), Positives = 278/650 (42%), Gaps = 103/650 (15%)

Query: 65  NLTSIKRLYLSENDELGGKIPTS-FGKLCKLTSFSMRFTKLSQDISEILGIFSACVANEL 123
           NL SI   Y    +   GK+P   F    KL +  + +  ++  IS +    S+CV+  +
Sbjct: 153 NLISITLSY----NNFTGKLPNDLFLSSKKLQTLDLSYNNITGPISGLTIPLSSCVS--M 206

Query: 124 ESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNG 183
             L    + I G++++ L     L SL+LS    DG IP S G++  L+ LDLS+N+L G
Sbjct: 207 TYLDFSGNSISGYISDSLINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTG 266

Query: 184 TVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP------FQLTVLELRSCHLGPRFPLW 237
                                         W+PP        L  L L   +     P  
Sbjct: 267 ------------------------------WIPPEIGDTCRSLQNLRLSYNNFTGVIPES 296

Query: 238 LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTP 297
           L S   L  LD+S+  IS   P     S      L +S N I G  P   +    L    
Sbjct: 297 LSSCSWLQSLDLSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSL---- 352

Query: 298 SDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRAL 357
                 I D S+N  SG I   +C G   + ++E L+L  N  +G+IP        LR +
Sbjct: 353 -----RIADFSSNRFSGVIPPDLCPG---AASLEELRLPDNLVTGEIPPAISQCSELRTI 404

Query: 358 NLG------------------------HNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIP 393
           +L                         +NN  G +P  IG L +L  L L NN L+G IP
Sbjct: 405 DLSLNYLNGTIPPEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIP 464

Query: 394 TSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQI 453
             F N S++E +    N L G +P   G   S L +L L +N F G+ P +L     L  
Sbjct: 465 PEFFNCSNIEWVSFTSNRLTGEVPKDFG-ILSRLAVLQLGNNNFTGEIPPELGKCTTLVW 523

Query: 454 LDVASNSLSGTIP---------RCINNL---SAMAITDSYDQA------VILYSSLRSEG 495
           LD+ +N L+G IP         + ++ L   + MA   +   +      ++ +S +R E 
Sbjct: 524 LDLNTNHLTGEIPPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPER 583

Query: 496 QSEIFE----DASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLS 551
             +I      D + +  G ++   +    +  +D+S N   G+IP E+  +  LQ L LS
Sbjct: 584 LLQIPSLKSCDFTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELS 643

Query: 552 HNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSST 611
           HN L+G IP  IG ++++   D S N+L GQIP+S SNLSFL  ++LSNN L G IP   
Sbjct: 644 HNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRG 703

Query: 612 QLQSFGASSFAGND-LCGDPLSNCTEKNVLVPEDENGDGNEDDDEDGVDW 660
           QL +  A+ +A N  LCG PL  C   N  +P                 W
Sbjct: 704 QLSTLPATQYANNPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASW 753

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  197 bits (501), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 193/638 (30%), Positives = 294/638 (46%), Gaps = 75/638 (11%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N   G+IPS LG L +L+ L L+SN L   +   L     L+ L ++ N L  N+  
Sbjct: 137 LSSNSLVGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLP- 195

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           L L  +++++ +    N EL GKIP   G    L    +  TK+S  +   LG  S    
Sbjct: 196 LELGKISTLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVSLGQLS---- 251

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
            +L+SL + S+ + G +  +L     L +L L +  L G++P  LG++ NLE + L  N 
Sbjct: 252 -KLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNN 310

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           L+G + E       ++ F ++                  L  ++L   +     P    +
Sbjct: 311 LHGPIPE-------EIGFMKS------------------LNAIDLSMNYFSGTIPKSFGN 345

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
              L +L +SS  I+  IP    N   +     I  NQI G IP    P + L+   +  
Sbjct: 346 LSNLQELMLSSNNITGSIPSILSNCT-KLVQFQIDANQISGLIP----PEIGLLKELNIF 400

Query: 301 LGPIFDLSNNALSGSIFHLI--CQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALN 358
           LG       N L G+I   +  CQ      N++ L LS+N  +G +P        L  L 
Sbjct: 401 LG-----WQNKLEGNIPDELAGCQ------NLQALDLSQNYLTGSLPAGLFQLRNLTKLL 449

Query: 359 LGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418
           L  N  +G +P+ IG  +SL+ L L NN ++G IP       +L  LDL EN L G +P 
Sbjct: 450 LISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPL 509

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAIT 478
            I      L++LNL +N   G  P+ L  L  LQ+LDV+SN L+G IP  + +L ++   
Sbjct: 510 EI-SNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISL--- 565

Query: 479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVE 538
              ++ ++  +S   E  S +    +L +                +D+S N  SG IP E
Sbjct: 566 ---NRLILSKNSFNGEIPSSLGHCTNLQL----------------LDLSSNNISGTIPEE 606

Query: 539 VTNLQGLQ-SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLN 597
           + ++Q L  +LNLS N L G IP+ I  +  +  LD+S N LSG +  ++S L  L  LN
Sbjct: 607 LFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDL-SALSGLENLVSLN 665

Query: 598 LSNNNLVGKIPSSTQL-QSFGASSFAGNDLCGDPLSNC 634
           +S+N   G +P S    Q  GA     N LC     +C
Sbjct: 666 ISHNRFSGYLPDSKVFRQLIGAEMEGNNGLCSKGFRSC 703

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	743
224072885	1024	predicted protein [Populus trichocarpa]	0.916	0.665	0.485	1e-169
315436720	1020	verticillium wilt resistance-like protei	0.920	0.670	0.470	1e-167
209970607	1045	M18S-3Ap [Malus floribunda]	0.931	0.662	0.474	1e-157
255581850	1082	leucine-rich repeat receptor protein kin	0.923	0.634	0.460	1e-156
209970603	1038	AM19-5p [Malus floribunda]	0.930	0.665	0.467	1e-155
356561578	1258	PREDICTED: LRR receptor-like serine/thre	0.920	0.543	0.448	1e-154
255543977	1075	serine/threonine-protein kinase bri1, pu	0.936	0.647	0.439	1e-154
356561606	1051	PREDICTED: leucine-rich repeat receptor	0.923	0.652	0.446	1e-153
356561645	1163	PREDICTED: probable leucine-rich repeat	0.920	0.588	0.446	1e-153
356561572	1176	PREDICTED: probable leucine-rich repeat	0.917	0.579	0.445	1e-152

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 358/738 (48%), Positives = 472/738 (63%), Gaps = 57/738 (7%)

Query: 6    FQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLEN 65
            FQG IP+ L NLT LK LDLS N  +S++  WL     L+ L++ SN LQG +SS  + N
Sbjct: 294  FQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLYGFEHLKLLNLGSNNLQGVLSS-AIGN 352

Query: 66   LTSIKRLYLSENDELG--GKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANEL 123
            +TS+  L LS N EL   G IP SF KLC L + S+   KL+QDI+E+L +   CV+ E+
Sbjct: 353  MTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSLSNVKLNQDIAEVLEVLLGCVSEEV 412

Query: 124  ESLRLGSSQIFGHLTNQLRRFKRL------------------------NSLDLSNTILDG 159
            ESL L    +FG LTN L +F+ L                         SL LS+  L+G
Sbjct: 413  ESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPIPMALGELVSLRSLVLSDNKLNG 472

Query: 160  SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQ 219
            ++P S G+++ LE +D+S+N   G VSE+HF NL  L  F A GN L  +++P+W+PP Q
Sbjct: 473  TLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLKNLRNFSAAGNQLNLRVSPDWIPP-Q 531

Query: 220  LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI 279
            L  ++LRS ++GP+FP W++    L+ LDIS++ IS+ IP  FW   ++  YLN+S NQI
Sbjct: 532  LVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISSTIPIWFWTMSFRMEYLNLSHNQI 591

Query: 280  YGGIP---KFD-NPSMPLITTPSDLL-GPI---------FDLSNNALSGSIFHLICQGEN 325
             G IP   K D   S PL+   S+   GP+          DLSNN+ SGS+ + +C   +
Sbjct: 592  QGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVGALDLSNNSFSGSMLNFLCHKID 651

Query: 326  FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRN 385
               N++ L L +N  SG IPDCW +W  L A+ L +N  +G++P SIG LS L SL++RN
Sbjct: 652  ELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNKLSGNIPDSIGALSLLESLHIRN 711

Query: 386  NILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQL 445
            + LSG +P S KN + L  LD+ ENELVGS+P+WIG+RFS + +LN+R+NKFHG  P +L
Sbjct: 712  SSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMVVLNMRANKFHGRIPREL 771

Query: 446  CGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASL 505
            C LA LQILD+A N LS +IP C N LSAMA  +     + L S       S  F++  L
Sbjct: 772  CNLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDSLGKIYLDSG------SSTFDNVLL 825

Query: 506  VMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV 565
            VMKG +VEY++IL  VRSID+S N   GEIP EVT L  LQSLNLS N LTGRIP+ IG 
Sbjct: 826  VMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNLSQNSLTGRIPEGIGS 885

Query: 566  MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGND 625
            +R +ES+D S NQLSG+IPQSMS+L+FL+HLNLS+N L G+IPS TQLQSFG SSF+GN+
Sbjct: 886  LRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSGTQLQSFGPSSFSGNE 945

Query: 626  LCGDPLS-NCTEKNVLVPEDENGDGNEDDDEDGVD--WLLYISMALGFVVGFWCFIGSLL 682
            LCG PLS NC+  N    E E      ++D +G+   W  Y+SM LGF+VGFW  +G L+
Sbjct: 946  LCGPPLSKNCSVDNKFHVEHE-----REEDGNGLKGRW-FYVSMVLGFIVGFWGVVGPLM 999

Query: 683  INRRWRCKYCHFLDRLGD 700
             NRRWR  Y HFLDRL D
Sbjct: 1000 FNRRWRYVYYHFLDRLRD 1017

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  593 bits (1530), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 349/741 (47%), Positives = 463/741 (62%), Gaps = 57/741 (7%)

Query: 4    NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL 63
            N FQGQ+P  L +L+SL+YL+L  N   S +  WL  +  LEFL++ SN   G++S+ G 
Sbjct: 282  NNFQGQLPHGLRSLSSLRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFHGSISN-GF 340

Query: 64   ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSA--CVAN 121
            +NLTS+  L LS+N EL G +P S G LC L    +    LS+D+SEIL   S+  C+ N
Sbjct: 341  QNLTSLTTLDLSDN-ELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLN 399

Query: 122  ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKL 181
             LESL L S +IFGHLT+++  FK L  L LS   + GSIP SLG +++L  LDLS N++
Sbjct: 400  GLESLYLDSCEIFGHLTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRV 459

Query: 182  NGT------------------------VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP 217
            NGT                        VSE+HF NLT+L  F+A+GN L+ + +P WVPP
Sbjct: 460  NGTLPESIGQLWKMEKLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPP 519

Query: 218  FQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGN 277
            FQL V+ L S HLGP+FP WL+SQR+   LDIS T I    P  FWN    YF LN+S N
Sbjct: 520  FQLGVMALSSWHLGPKFPSWLRSQRDFVYLDISVTGIIDTFPNWFWNLSTIYFSLNLSHN 579

Query: 278  QIYGGIPK-------------------FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFH 318
            QIYG +P                    FD P +P +++  + L    DLS+N  SG I +
Sbjct: 580  QIYGELPHRIGTSPVADLVYVDLSFNHFDGP-LPCLSSKVNTL----DLSSNLFSGPISN 634

Query: 319  LICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSL 378
            L+C        +E L L+ N+ SG+IPDCWMNW  + +++L +N+ +G +P S+G+L+ L
Sbjct: 635  LLCCKMEEPYWLETLHLADNHLSGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSLNLL 694

Query: 379  LSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH 438
             SL+LR N LSG++P+S +N +SL  +DLGEN  VG+IP WIGE+ S   I++L SN+F 
Sbjct: 695  QSLHLRKNNLSGVLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSNRFQ 754

Query: 439  GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSE 498
            G  P  LC L++L ILD+A N+LSGTIP+C  NLSAMA   +    +    +    G S 
Sbjct: 755  GQIPDNLCSLSYLTILDLAHNNLSGTIPKCFMNLSAMAANQNSSNPI--SYAFGHFGTS- 811

Query: 499  IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR 558
              E   L++KG+L+EY+S L LV S+D+S N  +GEIP  +T+L GL+ LNLS+N L GR
Sbjct: 812  -LETLLLMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKGR 870

Query: 559  IPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGA 618
            IP NIG +R +ES+DLS NQL G+IP SMS L+FL++LNLS NNL GKIPSSTQLQSF  
Sbjct: 871  IPKNIGNLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFDI 930

Query: 619  SSFAGNDLCGDPLSNCTEKNVLVPEDENGDGNEDDDEDGVDWL-LYISMALGFVVGFWCF 677
            SS+ GN LCG PL      +     D N + N + D   VDWL  Y SMA GFVVGFW  
Sbjct: 931  SSYDGNHLCGPPLLEICSTDATTSSDHNNNENNEGDGLEVDWLWFYASMAFGFVVGFWVV 990

Query: 678  IGSLLINRRWRCKYCHFLDRL 698
            +G LL N+ WR +Y   L+RL
Sbjct: 991  MGPLLFNKSWRFRYFRILERL 1011

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 338/713 (47%), Positives = 442/713 (61%), Gaps = 21/713 (2%)

Query: 1    LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            L  NQ  GQ+PS + N+T LK L+L SN+ NST+  WL  +N+LE L + SN L+G +SS
Sbjct: 327  LESNQLTGQLPSSIQNMTGLKVLNLGSNDFNSTIPEWLYSLNNLESLLLSSNALRGEISS 386

Query: 61   LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLS-QDISEILGIFSACV 119
              + N+TS+  L+L +N+ L GKIP S G LCKL    +     + Q  S I    S C 
Sbjct: 387  -SIGNMTSLVNLHL-DNNLLEGKIPNSLGHLCKLKDLDLSKNHFTVQRPSVIFESLSRCG 444

Query: 120  ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
             N ++SL L  + I G +   L     L  LD+S    +G+    +GQ+  L  LD+SNN
Sbjct: 445  PNGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISGNQFNGTFTEVIGQLKMLTDLDISNN 504

Query: 180  KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
             L   VSE+ F NLTKL  F ANGNS   K + +WVPPFQL +L+L S HLGP +P+WL+
Sbjct: 505  SLEDAVSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLR 564

Query: 240  SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299
            +Q +L  L +S T IS+ +P  FWN   +  YLN+S NQ+YG I       M ++   S+
Sbjct: 565  TQTQLTRLSLSCTGISSTVPTWFWNLTSKVRYLNLSHNQLYGQIQNIVAGPMSVVDLSSN 624

Query: 300  LLG---PI-------FDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM 349
                  PI        DLSN++ SGS+FH  C   +    + FL L  N  SG +PDCWM
Sbjct: 625  HFTGALPIVPTSLFWLDLSNSSFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGKVPDCWM 684

Query: 350  NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE 409
            +W  L  LNL +NN TG++PMS+G L  L SL+LRNN L G +P S +N + L V+DLGE
Sbjct: 685  SWQYLSFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVVDLGE 744

Query: 410  NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCI 469
            N   GSIP WIG+  S L+ILNLRSNKF GD P ++C L  LQILD+A N LSG IPRC 
Sbjct: 745  NGFSGSIPIWIGKSLSELQILNLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCF 804

Query: 470  NNLSAMA-ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSK 528
            +NLSAMA  ++S D +V +  +  S   S +   A LV KG  +EY  IL  V+ +D+S 
Sbjct: 805  HNLSAMADFSESRDASVYVILNGISVPLS-VTAKAILVTKGREMEYGKILKFVKFMDLSC 863

Query: 529  NIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMS 588
            N   GEIP E+T+L  L+SLNLS+N  TGRIP  IG M  +ESLD S NQL G+IPQSM+
Sbjct: 864  NFMYGEIPEELTDLLALKSLNLSNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMT 923

Query: 589  NLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPL-SNCTEKNVLVPE--DE 645
            NL+FL+HLNLSNNNL G+IP STQLQS   SSF GN+LCG PL  NC+E  V+ P   + 
Sbjct: 924  NLTFLSHLNLSNNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEH 983

Query: 646  NGDGNEDDDEDGVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRL 698
            +G G  +  ED  +W  Y+S+ +GF  GFW  +GSLL+N  W       L+R+
Sbjct: 984  DGGGGYNLLED--EW-FYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRI 1033

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 341/741 (46%), Positives = 460/741 (62%), Gaps = 55/741 (7%)

Query: 2    SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL 61
            S     G+IPS +GNLTSL+ LDLS N L   +   +  +  L+ L +  N L+G++ S 
Sbjct: 335  SNYNLDGKIPSTIGNLTSLRSLDLSFNSLEEGIPSAIGNLTSLKSLDLSRNSLEGDIPS- 393

Query: 62   GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN 121
             + NL S+  L LS N   GG IPT F  LC L S  +   KLSQ+I+E+  I S CV++
Sbjct: 394  AIGNLASLSSLDLSRNSLEGG-IPTWFRNLCNLRSLELSINKLSQEINEVFEILSGCVSD 452

Query: 122  ELESLRLGSSQIFGHLTNQLRRFKRLN------------------------SLDLSNTIL 157
             LESL L SSQ+ GHL+++L +FK L                         SLDL N  L
Sbjct: 453  ILESLILPSSQLSGHLSDRLVKFKNLAYLDLNDNLISGPIPENLGELNFLISLDLGNNKL 512

Query: 158  DGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP 217
            +GS+P   G +S L Y+D+SNN L G +SEIHF NLT LA F+A+ N L  +++P+W P 
Sbjct: 513  NGSLPIDFGMLSKLNYVDISNNSLEGEISEIHFANLTNLATFKASSNQLRLRVSPDWFPA 572

Query: 218  FQ-LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
            FQ ++ + L+   +GP+FP W+ S + L  LD+S++ IS+ +P  F N   + + +N+S 
Sbjct: 573  FQRVSTISLKCWKVGPQFPTWIHSLKYLAYLDLSNSTISSTLPTWFHNFSSRLYQINLSH 632

Query: 277  NQIYGGIP--KFDNPSMPLITTPSDLLG---------PI-FDLSNNALSGSIFHLICQGE 324
            NQ++G IP    D+    LI   S+  G         P   DLSNN+ SGSI   +C   
Sbjct: 633  NQMHGTIPYLSIDDSDYSLIDLSSNNFGGSMPFISSNPFGLDLSNNSFSGSISSFLCYKP 692

Query: 325  NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLR 384
                 I  L L +N FSG+IPDCWMNW     + L +N F+G++P SIGTLS L  LN+R
Sbjct: 693  R---TINVLNLGENLFSGEIPDCWMNWNYTNVIRLSNNYFSGNIPESIGTLSELSVLNIR 749

Query: 385  NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQ 444
            NN LSG +P S K+ +SL+VLDL  NEL G I +W+G+ F    ILNLR NKFHG  P +
Sbjct: 750  NNNLSGEMPISLKHCTSLQVLDLSGNELSGEITTWMGQHFQGTLILNLRGNKFHGFIPEE 809

Query: 445  LCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY--DQAVILYSSLRSEGQSEIFED 502
            LCG+  L ILD A+N+L+GTIPRCINN +A+    SY  D  V++       G +  + +
Sbjct: 810  LCGMTALVILDFANNNLNGTIPRCINNFTALLSGTSYLKDGKVLV-----DYGPTLTYSE 864

Query: 503  ASLVMK-GVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561
            +SL+ + G LVEY++ L  VRS+D S N  SGEIP E+T+L+GL  LNLSHN LTGRIP+
Sbjct: 865  SSLIERNGKLVEYSTTLGFVRSLDFSNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRIPE 924

Query: 562  NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSF 621
            NIG M++++ LD S NQLSG+IPQSMS+L+FLN+LNLS+N L G IPSSTQLQSF +SSF
Sbjct: 925  NIGAMKALQILDFSRNQLSGEIPQSMSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSSSF 984

Query: 622  AGNDLCGDPLSNCTEKNVLVPEDEN---GDGNEDDDEDGVDWL-LYISMALGFVVGFWCF 677
            +GN+LCG PL+     +   P+ E     DG     E  +DW   Y+S+A GFV+GFW  
Sbjct: 985  SGNNLCGPPLTQSCSGDGEKPDIEKRTTEDGGNGSPE-AIDWFYFYVSIAPGFVIGFWVV 1043

Query: 678  IGSLLINRRWRCKYCHFLDRL 698
            +G L  N+RWR  Y +FL+ L
Sbjct: 1044 VGPLAFNKRWRRLYFNFLEDL 1064

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 333/713 (46%), Positives = 432/713 (60%), Gaps = 22/713 (3%)

Query: 1    LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            L  NQ  GQ+PS + N+T L  L+L  N+ NST+  WL  +N+LE L + SN  +G +SS
Sbjct: 321  LEQNQLIGQLPSSIQNMTGLTTLNLEGNKFNSTIPEWLYNLNNLESLILSSNAFRGEISS 380

Query: 61   LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLS-QDISEILGIFSACV 119
              + N+TS+  L+L +N+ L GKIP S G LCKL    +     + +  SE+    S C 
Sbjct: 381  -SIGNMTSLVNLHL-DNNLLEGKIPNSLGHLCKLKVLDLSENHFTVRRPSEMFESLSRCG 438

Query: 120  ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
             + ++SL L  + I G +   L     L  LD+S    DG+    +GQ+  L  LD+S N
Sbjct: 439  PHGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISINQFDGTFTEVIGQLKMLTDLDISYN 498

Query: 180  KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
             L G VSE  F NLTKL  F ANGNS  +K + +W+PPFQL  L+L S HLGP +P+WLQ
Sbjct: 499  SLEGAVSEAFFSNLTKLKHFIANGNSFTWKTSRDWLPPFQLESLQLDSWHLGPEWPMWLQ 558

Query: 240  SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299
            +Q +L DL +S T IS+ IP  FWN   Q  YLN+S NQ+YG I         L+   S+
Sbjct: 559  TQTQLTDLSLSGTGISSAIPTWFWNLTSQVKYLNLSYNQLYGEIQNIFVAQYSLVDLSSN 618

Query: 300  LLG---PI-------FDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM 349
                  PI        DLSN++ SGS+FH  C           L L  N  SG IPDCWM
Sbjct: 619  RFTGSLPIVPASLWWLDLSNSSFSGSVFHFFCDRTYELKTTYVLDLGNNLLSGKIPDCWM 678

Query: 350  NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE 409
            NW  L  LNL +N+ TG++PMS+G L  L SL+LRNN L G +P S +N +SL +LDLG 
Sbjct: 679  NWQELEVLNLENNHLTGNVPMSLGYLQRLRSLHLRNNHLDGELPHSLQNCTSLSILDLGG 738

Query: 410  NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCI 469
            N  VGSIP WIG+  S L+ILNLRSN+F GD P ++C L  LQILD+A N LSGT  RC 
Sbjct: 739  NGFVGSIPIWIGKSLSELQILNLRSNEFKGDIPYEVCYLKSLQILDLARNKLSGTTSRCF 798

Query: 470  NNLSAMAI-TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSK 528
            +NLSAMAI ++S+      +    S G     E+A LV KG  +EY+ IL  V+S+D+S 
Sbjct: 799  HNLSAMAILSESFSPTT--FQMWSSAGSFSFLENAILVTKGREMEYSKILGFVKSMDLSC 856

Query: 529  NIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMS 588
            N  SGEIP  +T++  LQSLNLS+N  TGRIP  IG M  +ESLD S N+L G IP SM+
Sbjct: 857  NFLSGEIPEGLTSVLALQSLNLSNNRFTGRIPSKIGNMVRLESLDFSMNELHGGIPPSMT 916

Query: 589  NLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPL-SNCTEKNVLVPE--DE 645
             L+FL++LNLS NNL G+IP STQLQSF  SSF GN+LCG PL +NC+   V  P   ++
Sbjct: 917  TLTFLSYLNLSYNNLTGRIPESTQLQSFNQSSFVGNELCGRPLNNNCSANGVKPPPKVEQ 976

Query: 646  NGDGNEDDDEDGVDWLLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRL 698
            +G G     ED   W  Y+S+ LGF  GFW  +GSLL+N  W       L+R+
Sbjct: 977  DGGGGYYLLED--KW-FYVSLGLGFFTGFWIVLGSLLVNMPWSMLLSGLLNRI 1026

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561578|ref|XP_003549058.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 333/742 (44%), Positives = 451/742 (60%), Gaps = 58/742 (7%)

Query: 1    LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            LS NQ +G IP+ LGNLTSL  L LS+N+L  T+   L  +  L  L +  N+L+GN+ +
Sbjct: 365  LSANQLEGTIPTSLGNLTSLVKLQLSNNQLEGTIPTSLGNLTSLVELDLSGNQLEGNIPT 424

Query: 61   LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
              L NLTS+  L+LS + +L G IPTS G LC L    + + KL+Q ++E+L I + C++
Sbjct: 425  Y-LGNLTSLVELHLSYS-QLEGNIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCIS 482

Query: 121  NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
            + L  L + SS++ G+LT+ +  FK +  LD  N  + G++P S G++S+L YLDLS NK
Sbjct: 483  HGLTRLAVQSSRLSGNLTDHIGAFKNIEWLDFFNNSIGGALPRSFGKLSSLRYLDLSMNK 542

Query: 181  LNG------------------------TVSEIHFVNLTKLAFFRANGNSLIFKINPNWVP 216
             +G                         V E    NLT L  F A+GN+   K+ PNW+P
Sbjct: 543  FSGNPFESLGSLSKLLFLHIDGNLFHRVVKEDDLANLTSLTEFAASGNNFTLKVGPNWIP 602

Query: 217  PFQLTVLELRSCHLG-PRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNIS 275
             FQLT L++ S  LG P FPLW+QSQ +L  + +S+T I   IP   W ++ Q  YLN+S
Sbjct: 603  NFQLTYLDVTSWQLGGPSFPLWIQSQNKLQYVGLSNTGIFDSIPTQMWEALSQVLYLNLS 662

Query: 276  GNQIYGGI-PKFDNP-SMPLITTPSD-LLGPI---------FDLSNNALSGSIFHLICQG 323
             N I+G I     NP S+P I   S+ L G +          DLS+N+ S S+   +C  
Sbjct: 663  RNHIHGEIGTTLKNPISIPTIDLSSNHLCGKLPYLSSDVLQLDLSSNSFSESMNDFLCND 722

Query: 324  ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
            ++    ++FL L+ NN SG+IPDCWMNW  L  +NL  N+F G+LP S+G+L+ L SL +
Sbjct: 723  QDKPMQLQFLNLASNNLSGEIPDCWMNWTSLVDVNLQSNHFVGNLPQSMGSLADLQSLQI 782

Query: 384  RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
            RNN LSGI PTS K  + L  LDLGEN L G+IP+W+GE+   +KIL LRSN+F G  P 
Sbjct: 783  RNNTLSGIFPTSVKKNNQLISLDLGENNLSGTIPTWVGEKLLNVKILRLRSNRFGGHIPN 842

Query: 444  QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI----TDSYDQAVILYSSLRSEGQSEI 499
            ++C ++ LQ+LD+A N+LSG IP C +NLSAM +    TD    + + Y    S  QS +
Sbjct: 843  EICQMSHLQVLDLAQNNLSGNIPSCFSNLSAMTLMNQSTDPRIYSQVQYGKYYSSMQSIV 902

Query: 500  FEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRI 559
                 L +KG   EY +IL LV SID+S N   GEIP E+T L GL  LN+SHN L G I
Sbjct: 903  --SVLLWLKGRGDEYRNILGLVTSIDLSSNKLLGEIPREITYLNGLNFLNMSHNQLIGHI 960

Query: 560  PDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGAS 619
            P  IG MRS++S+D S NQLSG+IP +++NLSFL+ L+LS N+L G IP+ TQLQ+F AS
Sbjct: 961  PQGIGNMRSLQSIDFSRNQLSGEIPPTIANLSFLSMLDLSYNHLKGNIPTGTQLQTFDAS 1020

Query: 620  SFAGNDLCGDPLS-NCTEKNVLVPEDENGDGN--EDDDEDGVDWLLYISMALGFVVGFWC 676
            SF GN+LCG PL  NC+          NG  +  E  D  GV+W  ++SM +GFVVGF  
Sbjct: 1021 SFIGNNLCGPPLPLNCS---------SNGKTHSYEGSDGHGVNW-FFVSMTIGFVVGFLI 1070

Query: 677  FIGSLLINRRWRCKYCHFLDRL 698
             I  LLI R WR  Y HFLD +
Sbjct: 1071 VIAPLLICRSWRYAYFHFLDHV 1092

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 351/798 (43%), Positives = 462/798 (57%), Gaps = 102/798 (12%)

Query: 1    LSGNQFQGQIPSRLGNLTS-LKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
            LS N FQG IP+ L NLTS LK LDL  N  NS++  WL    +LEFLS+ SNRLQGN+S
Sbjct: 275  LSVNDFQGPIPNSLQNLTSSLKELDLGYNSFNSSLPNWLYGFTNLEFLSLNSNRLQGNIS 334

Query: 60   SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
            SL + N+TS+  L LS N  + G IPTSF  LC L S  +    LSQ I+++L I S C+
Sbjct: 335  SL-IGNMTSLITLDLSSNLAISGGIPTSFKHLCNLRSLVLDTVTLSQKINDVLEILSGCI 393

Query: 120  ANELESLRLGSSQIFGHLTNQ------------------------LRRFKRLNSLDLS-- 153
            ++ELES  + S Q+ G+LT+                         LR    L SLDLS  
Sbjct: 394  SDELESFSMYSCQLSGYLTDDLGHFKNLASLDLSYNSISGPIPKSLRHLCNLRSLDLSGN 453

Query: 154  ------NTILD---------------------GSIPFSLGQISNLEYLDLSNNKLNGT-- 184
                  N +L+                     G IP SLG++++L  L LS+NKLNGT  
Sbjct: 454  RWSQEINDVLEILSDCPTNVLESLSLSDCELSGPIPSSLGEMASLIRLSLSSNKLNGTLP 513

Query: 185  ----------------------VSEIHFVNLTKLAFFRAN--GNSLIFKINPNWVPPFQL 220
                                  V+E+HF NLTKL  F  +   N  + ++  NW PPFQL
Sbjct: 514  ESFGQLTRLEIAFFDGNLLEGEVTEVHFANLTKLFIFDGSMMANGPVLRVGSNWTPPFQL 573

Query: 221  TVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIY 280
              L LRS  +GP+FP WL S R L  LD+S++ IS+ IP  FW+    + Y N+S NQI+
Sbjct: 574  HYLSLRSWKIGPQFPAWLHSLRYLEILDLSNSGISSTIPVWFWDMSSNFAYANLSHNQIH 633

Query: 281  GGIPKFDNPSMPLITTPSDL-----LGPI---------FDLSNNALSGSIFHLICQGENF 326
            G IP     S     T  D+      GP+          DLS+N+ +GSI + +C     
Sbjct: 634  GVIPNVPVVSNDYRITMFDMSSNNFRGPVPYFSSNLSALDLSSNSFTGSIINFLCYKMQE 693

Query: 327  SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN 386
               +E L L  N  SG+IPDCW++W  L A+NL +N FTG++P SIGTLS L S++  NN
Sbjct: 694  VKKMEVLNLGGNLLSGEIPDCWLSWQSLTAINLSNNKFTGNIPKSIGTLSFLESVHFANN 753

Query: 387  ILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLC 446
             LSG IP S +N   L  LD   N+LVG IPSWIG+    + IL LR NK HG  P ++C
Sbjct: 754  DLSGDIPLSIQNCRKLFTLDFSGNKLVGKIPSWIGKSIPDMIILILRGNKLHGQIPEEIC 813

Query: 447  GLAFLQILDVASNSLSGTIPRCINNLSAMA-ITDSYDQAVILYSSLRSEGQSEIFEDAS- 504
             +A LQILD+A N+ S  IP C +N S M  + DS+       S++   G S I  D++ 
Sbjct: 814  RMASLQILDLADNNFSSMIPSCFSNFSGMVKVNDSFGSLTFDQSNV---GPSPILIDSAI 870

Query: 505  LVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIG 564
            LV+KG + EY++IL  V++ID+S N  SGEIP+ +T+L GLQSL+ S N LTGRIP +IG
Sbjct: 871  LVIKGRVAEYSTILGFVKAIDLSNNNLSGEIPMNITSLVGLQSLSFSQNSLTGRIPKDIG 930

Query: 565  VMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN 624
             M+S+ES+D S N L G+IP+S+S+L+FL+HLNLSNN L GKIPS TQL+ F  SSF  N
Sbjct: 931  AMQSLESIDFSQNHLFGEIPESISSLTFLSHLNLSNNKLTGKIPSGTQLRGFDPSSFMDN 990

Query: 625  DLCGDPLS-NCTEKNVLVPEDENGDGNEDDDEDGVDWL-LYISMALGFVVGFWCFIGSLL 682
            DLCG PL  NC+++ +L   D+  +  ED++   VDW   ++S+A GFVVGFW  +G L 
Sbjct: 991  DLCGPPLPLNCSKEGILHAPDDEKEREEDENGFEVDWFYFFVSIAPGFVVGFWLVVGPLC 1050

Query: 683  INRRWRCKYCHFLDRLGD 700
             NRRWR  Y  FL  L D
Sbjct: 1051 FNRRWRFAYFRFLYDLWD 1068

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561606|ref|XP_003549072.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 330/739 (44%), Positives = 443/739 (59%), Gaps = 53/739 (7%)

Query: 1    LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            LS N F   IP  L  L  LK LDLSS +L+ T+   L  +  L  L +  N+L+GN+ +
Sbjct: 311  LSFNSFSSSIPDCLYGLHRLKSLDLSSCDLHGTISDALGNLTSLVELDLSGNQLEGNIPT 370

Query: 61   LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
              L NLTS+  LYLS + +L G IPTS G LC L    + + KL+Q ++E+L I + C++
Sbjct: 371  -SLGNLTSLVELYLSYS-QLEGNIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCIS 428

Query: 121  NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
            + L +L + SS++ G+LT+ +  FK +  LD SN ++ GS+P S G++S+L YLDLS NK
Sbjct: 429  HGLTTLAVQSSRLSGNLTDHIGAFKNIVQLDFSNNLIGGSLPRSFGKLSSLRYLDLSMNK 488

Query: 181  L------------------------NGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVP 216
                                     +G V E    NLT L  F A+GN+   K+ PNW+P
Sbjct: 489  FSGNPFESLRSLSKLLSLHIDGNLFHGVVKEDDLANLTSLTEFVASGNNFTLKVGPNWIP 548

Query: 217  PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
             FQLT LE+ S  LGP FPLW+QSQ +L  + +S+T I   IP   W ++ Q  YLN+S 
Sbjct: 549  NFQLTYLEVTSWQLGPSFPLWIQSQNQLQYVGLSNTGIFDSIPTQMWEALSQVRYLNLSR 608

Query: 277  NQIYGGI-PKFDNP-SMPLITTPSD-LLGPI---------FDLSNNALSGSIFHLICQGE 324
            N I+G I     NP S+P I   S+ L G +          DLS+N+ S S+   +C  +
Sbjct: 609  NHIHGEIGTTLKNPISIPTIDLSSNHLCGKLPYLSSDVFWLDLSSNSFSESMNDFLCNDQ 668

Query: 325  NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLR 384
            +    +EFL L+ NN SG+IPDCWMNW  L  +NL  N+F G+LP S+G+L+ L SL +R
Sbjct: 669  DEPMGLEFLNLASNNLSGEIPDCWMNWTFLADVNLQSNHFVGNLPQSMGSLADLQSLQIR 728

Query: 385  NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQ 444
            NN LSGI P+S K  + L  LDLGEN L GSIP+W+GE    +KIL LRSN F G  P +
Sbjct: 729  NNTLSGIFPSSLKKNNQLISLDLGENNLSGSIPTWVGENLLNVKILRLRSNSFAGHIPNE 788

Query: 445  LCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDAS 504
            +C ++ LQ+LD+A N+LSG IP C +NLSAM + +      I          S +    S
Sbjct: 789  ICQMSLLQVLDLAQNNLSGNIPSCFSNLSAMTLKNQSTDPRIYSQGKHGTSYSSMESIVS 848

Query: 505  LV--MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562
            ++  +K    EY +IL LV SID+S N   GEIP E+T L GL  LN+SHN L G IP  
Sbjct: 849  VLLWLKRRGDEYRNILGLVTSIDLSSNKLLGEIPREITYLNGLNFLNMSHNQLIGHIPQG 908

Query: 563  IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFA 622
            IG MRS++S+D S NQL G+IP S++NLSFL+ L+LS N+L G IP+ TQLQ+F ASSF 
Sbjct: 909  IGNMRSLQSIDFSRNQLFGEIPPSIANLSFLSMLDLSYNHLKGNIPTGTQLQTFDASSFI 968

Query: 623  GNDLCGDPLS-NCTEKNVLVPEDENGDGN--EDDDEDGVDWLLYISMALGFVVGFWCFIG 679
            GN+LCG PL  NC+          NG  +  E  D  GV+W  ++SM +GF+VGFW  I 
Sbjct: 969  GNNLCGPPLPINCS---------SNGQTHSYEGSDGHGVNW-FFVSMTIGFIVGFWIVIA 1018

Query: 680  SLLINRRWRCKYCHFLDRL 698
             LLI R WR  Y HFLD +
Sbjct: 1019 PLLICRSWRYAYFHFLDHV 1037

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561645|ref|XP_003549090.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Glycine max]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 333/745 (44%), Positives = 448/745 (60%), Gaps = 61/745 (8%)

Query: 1    LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            LS +Q +G IP+ LGNLTSL  LDLS N+L   +   L  +  L  L +  N+L+GN+ +
Sbjct: 413  LSYSQLEGNIPTSLGNLTSLVELDLSGNQLEGNIPTSLGNLTSLVELDLSGNQLEGNIPT 472

Query: 61   LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
              L NLTS+  L LS + +L G IPTS G LC L    + + KL+Q ++E+L I + C++
Sbjct: 473  -SLGNLTSLVELDLSYS-QLEGTIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCIS 530

Query: 121  NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
            +EL +L + SS++ G+LT+ +  FK +  LD SN ++ G++P S G++S+L YLDLS NK
Sbjct: 531  HELTNLAVQSSRLSGNLTDHVGAFKNIERLDFSNNLIGGALPKSFGKLSSLRYLDLSINK 590

Query: 181  LNG------------------------TVSEIHFVNLTKLAFFRANGNSLIFKINPNWVP 216
             +G                         V E    NLT L  F A+GN+   K+ PNW+P
Sbjct: 591  FSGNPFESLGSLSKLSSLHIDGNLFHRVVKEDDLANLTSLTEFGASGNNFTLKVGPNWIP 650

Query: 217  PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
             FQLT LE+ S  LGP FPLW+QSQ +L  + +S+T I   I    W ++ Q  YLN+S 
Sbjct: 651  NFQLTYLEVTSWPLGPSFPLWIQSQNKLEYVGLSNTGIFDSISTQMWEALSQVLYLNLSR 710

Query: 277  NQIYGGI-PKFDNP-SMPLITTPSD-LLGPI---------FDLSNNALSGSIFHLICQGE 324
            N I+G I     NP S+P I   S+ L G +          DLS+N+ S S+   +C  +
Sbjct: 711  NHIHGEIGTTLKNPISIPTIDLSSNHLCGKLPYLSSNVLQLDLSSNSFSESMNDFLCNDQ 770

Query: 325  NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLR 384
            +    +EFL L+ NN SG+IPDCWM+W  L  +NL  N+F G+LP S+G+L+ L SL + 
Sbjct: 771  DEPMQLEFLNLASNNLSGEIPDCWMDWTSLVDVNLQSNHFVGNLPQSMGSLAELQSLQIH 830

Query: 385  NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQ 444
            NN LSGI PTS K  + L  LDLG N L G+IP+W+GE    LKIL LRSN+F    P +
Sbjct: 831  NNTLSGIFPTSLKKNNQLISLDLGANNLSGTIPTWVGENLLNLKILRLRSNRFASHIPSE 890

Query: 445  LCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDS------YDQAVILYSSLRSEGQSE 498
            +C ++ LQ+LD+A N+LSG IP C +NLSAMA+ +       Y QA   Y    S  QS 
Sbjct: 891  ICQMSHLQVLDLAENNLSGNIPSCFSNLSAMALKNQSTDPRIYSQAQ--YGRRYSSTQSI 948

Query: 499  IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR 558
            +     L +KG   EY +IL LV SID+S N   GEIP E+T L GL  LNLSHN   G 
Sbjct: 949  V--SVLLWLKGRRDEYRNILGLVTSIDLSSNKLLGEIPREITYLNGLNFLNLSHNQFIGH 1006

Query: 559  IPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGA 618
            IP  IG MRS++S+D S NQLSG+IP +++NLSFL+ L+LS N+L GKIP+ TQLQ+F A
Sbjct: 1007 IPQGIGNMRSLQSIDFSRNQLSGEIPPTIANLSFLSMLDLSYNHLKGKIPTGTQLQTFNA 1066

Query: 619  SSFAGNDLCGDPLS-NCTEKNVLVPEDENGDGN--EDDDEDGVDWLLYISMALGFVVGFW 675
            SSF GN+LCG PL  NC+          NG  +  E  D  GV+W  ++SM +GF+VGFW
Sbjct: 1067 SSFIGNNLCGPPLPVNCS---------SNGKTHSYEGSDGHGVNW-FFVSMTIGFIVGFW 1116

Query: 676  CFIGSLLINRRWRCKYCHFLDRLGD 700
              I  LLI R WRC     +  L D
Sbjct: 1117 IVIAPLLICRSWRCVSSQIVQMLVD 1141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561572|ref|XP_003549055.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Glycine max]

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 331/743 (44%), Positives = 444/743 (59%), Gaps = 61/743 (8%)

Query: 1    LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            L  N   G I   LGNLTSL  L LSSN+L  T+   L  +  L  L +  N+L+GN+ +
Sbjct: 392  LMDNNLDGTISDALGNLTSLVELYLSSNQLEGTIPTSLGNLTSLVELDLSRNQLEGNIPT 451

Query: 61   LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
              L NLTS+  L LS N +L G IPTS G LC L    + + KL+Q ++E+L I + C++
Sbjct: 452  -SLGNLTSLVELDLSGN-QLEGTIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCIS 509

Query: 121  NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
            + L +L + SS++ G+LT+ +  FK +  LD  N  + G++P S G++S+  +LDLS NK
Sbjct: 510  HGLTTLAVRSSRLSGNLTDHIGAFKNIERLDFFNNSIGGALPRSFGKLSSFRHLDLSINK 569

Query: 181  L------------------------NGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVP 216
                                     +G V E    N T L  F A+GNS   K+ P W+P
Sbjct: 570  FSGNPFESLRSLSKLSSLHIGGNLFHGVVKEDDLANFTSLMGFVASGNSFTLKVGPKWLP 629

Query: 217  PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
             FQLT LE+ S  LGP FPLW+QSQ +LN + +S+T I   IP   W ++ Q  YLN+S 
Sbjct: 630  NFQLTYLEVTSWQLGPSFPLWIQSQNKLNYVGLSNTGIFDSIPTQMWEALSQVLYLNLSR 689

Query: 277  NQIYGGI-PKFDNP-SMPLITTPS------------DLLGPIFDLSNNALSGSIFHLICQ 322
            N I+G I     NP S+P I   S            D+LG   DLS+N+ S S+   +C 
Sbjct: 690  NHIHGEIGTTLKNPISIPTIDLSSNHLCGKLPYLSSDVLG--LDLSSNSFSESMNDFLCN 747

Query: 323  GENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLN 382
             ++    ++FL L+ NN SG+IPDCWMNW  L  +NL  N+F G+LP S+G+L+ L SL 
Sbjct: 748  DQDKPMQLQFLNLASNNLSGEIPDCWMNWTSLVDVNLQSNHFVGNLPQSMGSLADLQSLQ 807

Query: 383  LRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP 442
            +RNN LSGI PTS K  + L  LDLGEN L G+IP+W+GE+   +KIL LRSN+F G  P
Sbjct: 808  IRNNTLSGIFPTSVKKNNQLISLDLGENNLSGTIPTWVGEKLLNVKILRLRSNRFGGHIP 867

Query: 443  IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI----TDSYDQAVILYSSLRSEGQSE 498
             ++C ++ LQ+LD+A N+LSG IP C +NLSAM +    TD    + + Y    S  QS 
Sbjct: 868  NEICQMSHLQVLDLAQNNLSGNIPSCFSNLSAMTLKNQSTDPRIYSQVQYGKYYSSMQSI 927

Query: 499  IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR 558
            +     L +KG   EY +IL LV SID+S N   GEIP E+T L GL  LN+SHN L G 
Sbjct: 928  V--SVLLWLKGRGDEYGNILGLVTSIDLSSNKLLGEIPREITYLNGLNFLNMSHNQLIGH 985

Query: 559  IPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGA 618
            IP  IG MRS++S+D S NQLSG+IP +++NLSFL+ L+LS N+L G IP+ TQLQ+F A
Sbjct: 986  IPQGIGNMRSLQSIDFSRNQLSGEIPPTIANLSFLSMLDLSYNHLKGNIPTGTQLQTFDA 1045

Query: 619  SSFAGNDLCGDPLS-NCTEKNVLVPEDENGDGN--EDDDEDGVDWLLYISMALGFVVGFW 675
            SSF GN+LCG PL  NC+          NG  +  E     GV+W  ++SM +GF+VGFW
Sbjct: 1046 SSFIGNNLCGPPLPINCS---------SNGKTHSYEGSHGHGVNW-FFVSMTIGFIVGFW 1095

Query: 676  CFIGSLLINRRWRCKYCHFLDRL 698
              I  LLI R WR  Y HFLD +
Sbjct: 1096 IVIAPLLICRSWRYAYFHFLDHV 1118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	743
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.893	0.818	0.294	3.2e-65
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.842	0.691	0.310	4.2e-63
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.882	0.695	0.310	5.2e-63
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.876	0.662	0.291	3e-62
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.810	0.742	0.308	4.3e-61
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.861	0.737	0.305	7.1e-61
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.886	0.778	0.282	5e-60
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.895	0.796	0.294	3.5e-59
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.885	0.887	0.295	1.7e-57
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.884	0.750	0.300	2.4e-56

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 213/724 (29%), Positives = 336/724 (46%)

Query:     1 LSGNQFQGQIPS-RLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
             +S N  QG+IP     NLTSL  LD+  N  N ++   L  + +L+ L +  N + G +S
Sbjct:   112 VSFNNIQGEIPGYAFVNLTSLISLDMCCNRFNGSIPHELFSLTNLQRLDLSRNVIGGTLS 171

Query:    60 SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
                ++ L +++ L L EN  +GG IP+  G L +L + ++R    +  I       S   
Sbjct:   172 G-DIKELKNLQELILDEN-LIGGAIPSEIGSLVELLTLTLRQNMFNSSIPS-----SVSR 224

Query:   120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
               +L+++ L ++ +   + + +     L++L LS   L G IP S+  + NLE L L NN
Sbjct:   225 LTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSSIHNLKNLETLQLENN 284

Query:   180 K-LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWV-PPFQLTVLELRSCHLGPRFPLW 237
               L+G +       L KL   R  GN+ +   N  +V P F+LT L LRSC L    P W
Sbjct:   285 NGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDW 344

Query:   238 LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK--FDNPSMP-LI 294
             L++Q  L  LD+S  R+  + P+  W +  +   + +S N++ G +P   F  PS+  L+
Sbjct:   345 LKNQTALVYLDLSINRLEGRFPK--WLADLKIRNITLSDNRLTGSLPPNLFQRPSLYYLV 402

Query:   295 TTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNN-------IEFLKL---SKNNFSGDI 344
              + ++  G I D    +    +  L+    NFS +       I FLKL   SKN  SG+ 
Sbjct:   403 LSRNNFSGQIPDTIGES---QVMVLMLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEF 459

Query:   345 P----DCWMNWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFS 400
             P    + ++ WL     ++  N F+G +P                       P +F+N S
Sbjct:   460 PRFRPESYLEWL-----DISSNEFSGDVP--AYFGGSTSMLLMSQNNFSGEFPQNFRNLS 512

Query:   401 SLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS 460
              L  LDL +N++ G++ S I +  S +++L+LR+N   G  P  +  L  L++LD++ N+
Sbjct:   513 YLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENN 572

Query:   461 LSGTIPRCINNLSAMAITDSYDQAVI--LYSSLRS----EGQSEI-FEDA-SLVM----- 507
             L G +P  + NL+ M  +       I   +SS       E   EI  ED  SLV+     
Sbjct:   573 LDGYLPSSLGNLTCMIKSPEPSAMTIRPYFSSYTDIPNIERLIEIESEDIFSLVVNWKNS 632

Query:   508 KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR 567
             K VL + N  L  +  +D+SKN   GEIP  + NL+ L+ LNLS+N  +G IP + G + 
Sbjct:   633 KQVLFDRNFYLYTL--LDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFGDLE 690

Query:   568 SIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASS-FAGND- 625
              +ESLDLS N L+G+IP+                   G+IP S QL      + +A N  
Sbjct:   691 KVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDRLNNPNIYANNSG 750

Query:   626 LCGDPLS-NCTEKNVLVPXXXXXXXXXXXXXXXVDWLLYISMALGFVVGFWCFIGSLLIN 684
             +CG  +   C       P                 W    + A+G   GF   +  +  N
Sbjct:   751 ICGMQIQVPCFPTQTKQPAEEKEEEDKEEEETIFSWN---AAAIGCSCGFLIAVVFMSYN 807

Query:   685 RRWR 688
               W+
Sbjct:   808 ELWK 811

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 206/664 (31%), Positives = 317/664 (47%)

Query:     1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSN-RLQGNVS 59
             LS N     IP+ L  LT+L+ L L  + L  ++      +  LE L + +N  LQG + 
Sbjct:   254 LSENSLNSPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIP 313

Query:    60 SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
             S+ L +L  +K L LS N EL G+I        +    S+ F  LS +  ++ G     +
Sbjct:   314 SV-LGDLPQLKFLDLSAN-ELNGQIHGFLDAFSRNKGNSLVFLDLSSN--KLAGTLPESL 369

Query:   120 AN--ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS 177
              +   L++L L S+   G + + +     L  LDLSN  ++G+I  SLGQ++ L  L+L 
Sbjct:   370 GSLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLM 429

Query:   178 NNKLNGTVSEIHFVNLTKLAFFRANGN---SLIFKINPNWVPPFQLTVLELRSCHLGPRF 234
              N   G + + HFVNL  L   R       SL+FK+   W+PPF+L ++++ +C +G  F
Sbjct:   430 ANTWGGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIG-LF 488

Query:   235 PLWLQSQRELNDLDISSTRISAKIPRGFWNSIY-QYFYLNISGNQIYGGIP-KFDNPSMP 292
             P+WLQ Q +LN + + +T I   IP  +++ I  +  YL ++ N+I G +P K   P + 
Sbjct:   489 PMWLQVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQKLAFPKLN 548

Query:   293 LITTPSDLLGPIFDL-SNNALSGSIFHLICQGENFSNNIEFL--KLSK-----NNFSGDI 344
              I   S+     F L S NA    ++     G +   NI+ L  ++ K     N+F+G+I
Sbjct:   549 TIDLSSNNFEGTFPLWSTNATELRLYENNFSG-SLPQNIDVLMPRMEKIYLFSNSFTGNI 607

Query:   345 PDCWMNWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEV 404
             P        L+ L+L  N+F+GS P                       P S     SL V
Sbjct:   608 PSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSV 667

Query:   405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT 464
             L L +N L G IP  +    S L  ++L  NK  G  P  +  L+ L +L + SNS +G 
Sbjct:   668 LLLNQNSLEGKIPESL-RNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQSNSFTGQ 726

Query:   465 IPR--C------INNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNS 516
             IP   C      I +LS   I+    + +   +++     +E+F++   ++     EY +
Sbjct:   727 IPDDLCNVPNLRILDLSGNKISGPIPKCISNLTAIARGTNNEVFQNLVFIVTRAR-EYEA 785

Query:   517 ILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSA 576
             I N   SI++S N  SGEIP E+  L  L+ LNLS N + G IP+ I  +  +E+LDLS 
Sbjct:   786 IAN---SINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKISELSRLETLDLSK 842

Query:   577 NQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAGNDL-CGDPLSNCT 635
             N+ SG IPQ                   G IP   + Q    S + GN+L CG PL    
Sbjct:   843 NKFSGAIPQSFAAISSLQRLNLSFNKLEGSIPKLLKFQD--PSIYIGNELLCGKPLPKKC 900

Query:   636 EKNV 639
              K++
Sbjct:   901 PKDI 904

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 5.2e-63, P = 5.2e-63
 Identities = 224/721 (31%), Positives = 331/721 (45%)

Query:     1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
             L  N F GQIPS +GNL  L YL LS N     +      +N L  L V SN+L GNV  
Sbjct:   228 LPSNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVP- 286

Query:    61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR---FTK------------LS 105
             + L NLT +  L LS N +  G IP +   L  L  F      FT             + 
Sbjct:   287 ISLLNLTRLSALLLSHN-QFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIR 345

Query:   106 QDISE-----ILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILD-G 159
              D+S+      L   +    + L+ L +GS+   G +   L RF  L   DLS+      
Sbjct:   346 LDLSDNQLNGTLHFGNISSPSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCR 405

Query:   160 SIPFSLGQISNLEYLD-LSNNKLNGTVSEIHFV--NLTKLAFFRANGNSLIFKINPNWV- 215
              + FS+   S+L+ LD L  + L  T  +++ +      L     +GN L+   N + V 
Sbjct:   406 PVDFSI--FSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGN-LVSATNKSSVS 462

Query:   216 --PPFQ-LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYL 272
               PP Q +  L L  C +   FP  L++Q EL  LD+S+ +I  ++P   W ++   FYL
Sbjct:   463 SDPPSQSIQSLYLSGCGITD-FPEILRTQHELGFLDVSNNKIKGQVPGWLW-TLPNLFYL 520

Query:   273 NISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEF 332
             N+S N             +  +  PS +   +F  SNN  +G I   IC G    N ++ 
Sbjct:   521 NLSNNTFISFESSSKKHGLSSVRKPSMI--HLF-ASNNNFTGKIPSFIC-GLRSLNTLD- 575

Query:   333 LKLSKNNFSGDIPDCWMNWLR--LRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXX 390
               LS+NN++G IP C M  L+  L  LNL  NN +G LP                     
Sbjct:   576 --LSENNYNGSIPRC-MEKLKSTLFVLNLRQNNLSGGLPKHIFESLRSLDVGHNLLVGKL 632

Query:   391 XXPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAF 450
               P S   FS+LEVL++  N +  + P W+    S L++L LRSN FHG  PI       
Sbjct:   633 --PRSLIRFSNLEVLNVESNRINDTFPFWLSS-LSKLQVLVLRSNAFHG--PIHEATFPE 687

Query:   451 LQILDVASNSLSGTIP-RCINNLSAMA-ITDSYDQAVILYSSLRSEGQSEIFEDASLVM- 507
             L+I+D++ N  +GT+P       SAM+ +  + DQ     S+ +  G    ++D+ ++M 
Sbjct:   688 LRIIDISHNHFNGTLPTEYFVKWSAMSSLGKNEDQ-----SNEKYMGSGLYYQDSMVLMN 742

Query:   508 KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR 567
             KG+ +E   IL +  ++D S N F GEIP  +  L+ L  LNLS+N   G IP ++G + 
Sbjct:   743 KGLAMELVRILTIYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLT 802

Query:   568 SIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAGN-DL 626
             ++ESLD+S N+L+G+IPQ                   G +P  TQ +    S+F  N  L
Sbjct:   803 ALESLDVSQNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGL 862

Query:   627 CGDPLSN-CTEKNVLVPXXXXXXXXXXXXXXXVDWLLYISMALGFVVG--FWCFIGSLLI 683
              G  L   C +K+                   + W   I+ A+GF+ G  F   IG +L+
Sbjct:   863 FGPSLDEVCRDKHTPASQQNETTETEEEDEEEISW---IAAAIGFIPGIVFGLTIGYILV 919

Query:   684 N 684
             +
Sbjct:   920 S 920

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 199/683 (29%), Positives = 322/683 (47%)

Query:     1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
             LS N   G+IPS  GNL  L  L++ SN+L+ +    L  +  L  LS+++NRL G + S
Sbjct:   287 LSDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLTGTLPS 346

Query:    61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
               + +L+++K    +EN    G +P+S   +  L + ++   +L+      LG  +    
Sbjct:   347 -NMSSLSNLKLFDATEN-HFTGPLPSSLFNIPSLKTITLENNQLNGS----LGFGNISSY 400

Query:   121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL-GQISNLEYLDLSNN 179
             + L  LRLG++   G +   + +   L  LDLSN    G + F++   + ++EYL+LS+ 
Sbjct:   401 SNLTVLRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIEYLNLSHL 460

Query:   180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLE---LRSCHLGPRFPL 236
                 T+     ++  KL        S +   N + +    L ++    L  C +   FP 
Sbjct:   461 NTTTTIDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGI-TEFPK 519

Query:   237 WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITT 296
             +L+SQ  +  LDIS+ +I  ++P   W  +    Y+N+S N   G   +     +  I  
Sbjct:   520 FLRSQELMLTLDISNNKIKGQVPGWLW-MLPVLNYVNLSNNTFIG-FERSTKLGLTSIQE 577

Query:   297 PSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR--L 354
             P   +  +F  SNN  +G+I   IC+    S     L  S N F+G IP C  N     L
Sbjct:   578 PP-AMRQLF-CSNNNFTGNIPSFICELPYLST----LDFSNNKFNGSIPTCMGNIQSPYL 631

Query:   355 RALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGENELVG 414
             +ALNL HN  +G LP                       P S  + SSL +L++  N++  
Sbjct:   632 QALNLRHNRLSGLLP--ENIFESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISD 689

Query:   415 SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP-RCINNLS 473
             + P W+      L++L LRSN F+G  PI+    + L+I+D++ N  +GT+P     N +
Sbjct:   690 TFPLWLSS-LQELQVLVLRSNAFYG--PIEKTQFSKLRIIDISGNQFNGTLPANFFVNWT 746

Query:   474 AM-AITDSYDQAV-ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIF 531
             AM ++ ++ DQ+     S++        F+   L+ KGV +E   +L +   ID S N F
Sbjct:   747 AMFSLDENEDQSNGETMSNMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKF 806

Query:   532 SGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQXXXXXX 591
              GEIP  +  L+ L  LNLS+N L+G I  ++G + ++ESLD+S N+LSG+IPQ      
Sbjct:   807 EGEIPKSIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLT 866

Query:   592 XXXXXXXXXXXXVGKIPSSTQLQSFGASSFAGND-LCGDPLSNCTEKNVLVPXXXXXXXX 650
                         VG +P  TQ Q+   SSF  N  L G  L    + +   P        
Sbjct:   867 YLAYMNFSHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPE 926

Query:   651 XXXXXXXVDWLLYISMALGFVVG 673
                    V  + +I+  +GF++G
Sbjct:   927 PEEDEEEV--ISWIAAVIGFILG 947

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
 Identities = 196/636 (30%), Positives = 303/636 (47%)

Query:     1 LSGNQFQGQIPSRLGNLT-SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
             LS N F G +P  +  L   LKYLDL++N     +   + +++ L+ L++Y +   G   
Sbjct:   118 LSQNLFNGSLPDDINRLAPKLKYLDLAANSFAGDIPKNIGRISKLKVLNLYMSEYDGTFP 177

Query:    60 SLGLENLTSIKRLYLSENDELGG-KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
             S  + +L+ ++ L L+ ND+    K+PT FGKL KL    +    L  +IS +  +F   
Sbjct:   178 S-EIGDLSELEELQLALNDKFTPVKLPTEFGKLKKLKYMWLEEMNLIGEISAV--VFENM 234

Query:   119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178
                +L+ + L  + + G + + L   K L  L L    L G IP S+    NL +LDLS 
Sbjct:   235 T--DLKHVDLSVNNLTGRIPDVLFGLKNLTELYLFANDLTGEIPKSISA-KNLVHLDLSA 291

Query:   179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF-QLTVLELRSCHLGPRFPLW 237
             N LNG++ E    NLT L       N L  +I P  +    +L  L+L +  L    P  
Sbjct:   292 NNLNGSIPE-SIGNLTNLELLYLFVNELTGEI-PRAIGKLPELKELKLFTNKLTGEIPAE 349

Query:   238 LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKF--DNPSMPLIT 295
             +    +L   ++S  +++ K+P    +       + +  N + G IP+   D  ++  + 
Sbjct:   350 IGFISKLERFEVSENQLTGKLPENLCHGGKLQSVI-VYSNNLTGEIPESLGDCETLSSVL 408

Query:   296 TPSDLLGPIFDLSNNALS-----GSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMN 350
               ++       +SNN  S     G I   IC+     +++  L LS N F+G IP C  N
Sbjct:   409 LQNNGFSGSVTISNNTRSNNNFTGKIPSFICE----LHSLILLDLSTNKFNGSIPRCIAN 464

Query:   351 WLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGEN 410
                L  LNLG N+ +GS+P                       P S    SSLEVL++  N
Sbjct:   465 LSTLEVLNLGKNHLSGSIP--ENISTSVKSIDIGHNQLAGKLPRSLVRISSLEVLNVESN 522

Query:   411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR-CI 469
             ++  + P W+ +    L++L LRSN FHG   I   G + L+I+D++ N  +GT+P    
Sbjct:   523 KINDTFPFWL-DSMQQLQVLVLRSNAFHGS--INQNGFSKLRIIDISGNHFNGTLPLDFF 579

Query:   470 NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVM-KGVLVEYNSILNLVRSIDVSK 528
              N +AM      +   +  + +R+      + D+ +VM KG+ +E   ILN   +ID S 
Sbjct:   580 VNWTAMFSLGKIEDQYMGTNYMRTN----YYSDSIVVMIKGIALEMVRILNTFTTIDFSG 635

Query:   529 NIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQXXX 588
             N F GEIP  V  L+ L  LNLS+N  TG IP ++G +  +ESLD+S N+LSG+IP    
Sbjct:   636 NKFEGEIPRSVGLLKELHVLNLSNNGFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELG 695

Query:   589 XXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAGN 624
                            VG +P  TQ Q+   SSFA N
Sbjct:   696 KLSYLAYMNFSQNQFVGLVPGGTQFQTQPCSSFADN 731

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 218/713 (30%), Positives = 321/713 (45%)

Query:     1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
             LS N F G IPS +GNL+ L +LDLS NE     + +   +N L  L V SN L G +  
Sbjct:   150 LSKNYFSGGIPSSIGNLSQLTFLDLSGNEFVGE-MPFFGNMNQLTNLYVDSNDLTG-IFP 207

Query:    61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L L NL  +  L LS N +  G +P++   L  L  F       +  +   L   ++  +
Sbjct:   208 LSLLNLKHLSDLSLSRN-QFTGTLPSNMSSLSNLEYFEAWGNAFTGTLPSSLFTIASLTS 266

Query:   121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
               L + +L  +  FG++++       L  LD+SN    G IP S+ +  NL+ LDLS+  
Sbjct:   267 INLRNNQLNGTLEFGNISSP----STLTVLDISNNNFIGPIPKSISKFINLQDLDLSHLN 322

Query:   181 LNGTVSEIHFVNLTKL-----------------AFFRANGNSLI-FKINPNWVP------ 216
               G V    F NL  L                 A F ++ NS+    ++ N V       
Sbjct:   323 TQGPVDFSIFTNLKSLQLLNLSHLNTTTTIDLNALFSSHLNSIYSMDLSGNHVSATTKIS 382

Query:   217 -----PFQL-TVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYF 270
                  P QL + L L  C +   FP  L+SQ ++ +LDIS+ +I  ++P   W ++ +  
Sbjct:   383 VADHHPTQLISQLYLSGCGI-TEFPELLRSQHKMTNLDISNNKIKGQVPGWLW-TLPKLI 440

Query:   271 YLNISGNQIYGGIPKFDNPSMPLITTPSD--LLGPIFDLSNNALSGSIFHLICQGENFSN 328
             ++++S N I+ G  +     + LIT PS   L+G     SNN  +G I   IC       
Sbjct:   441 FVDLSNN-IFTGFERSTEHGLSLITKPSMQYLVG-----SNNNFTGKIPSFICA----LR 490

Query:   329 NIEFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXX 387
             ++  L LS NN +G IP C  N    L  LNL  N   G LP                  
Sbjct:   491 SLITLDLSDNNLNGSIPPCMGNLKSTLSFLNLRQNRLGGGLPRSIFKSLRSLDVGHNQLV 550

Query:   388 XXXXXPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG 447
                  P SF   S+LEVL++  N +  + P W+      L++L LRSN FHG  PI    
Sbjct:   551 GKL--PRSFIRLSALEVLNVENNRINDTFPFWLSS-LKKLQVLVLRSNAFHG--PIHHAS 605

Query:   448 LAFLQILDVASNSLSGTIPRCI----NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA 503
                L+I++++ N  SGT+P       N +S++  T+   Q   +  S R       + D+
Sbjct:   606 FHTLRIINLSHNQFSGTLPANYFVNWNAMSSLMATEDRSQEKYMGDSFR------YYHDS 659

Query:   504 SLVM-KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562
              ++M KG+ +E   IL +  ++D S+N   GEIP  +  L+ L  LNLS N  TG IP +
Sbjct:   660 VVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRSIGLLKELHVLNLSSNAFTGHIPSS 719

Query:   563 IGVMRSIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFA 622
             +G +R +ESLD+S N+LSG+IPQ                   G +P  TQ +    SSF 
Sbjct:   720 MGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNFSHNQLGGLVPGGTQFRRQNCSSFK 779

Query:   623 GND-LCGDPLSN-CTEKNVLVPXXXXXXXXXXXXXXXVDWLLYISMALGFVVG 673
              N  L G  L   C + +   P                 W   I+ A+GF  G
Sbjct:   780 DNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEEDREVFSW---IAAAIGFGPG 829

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 200/709 (28%), Positives = 322/709 (45%)

Query:     4 NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNV-SSLG 62
             N+F G+IP+ +GNL  L++L L++N L   +   L  ++ L  L ++SNRL G +  S+G
Sbjct:   144 NKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIG 203

Query:    63 LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANE 122
               +L  ++ L L+ N+ L G+IP+S G L  L    +   +L  ++   +G        E
Sbjct:   204 --DLKQLRNLSLASNN-LIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLI-----E 255

Query:   123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
             L  +   ++ + G++        +L+   LS+     + PF +    NLEY D+S N  +
Sbjct:   256 LRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFS 315

Query:   183 GTVSE-IHFVNLTKLAFFRANG-NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
             G   + +  +   +  + + N     I   N +     Q  +L     H GP  P  +  
Sbjct:   316 GPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLH-GP-IPESISR 373

Query:   241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK--FDNPSMPLI---- 294
                L +LDIS    +  IP    + +    +L++S N + G +P   +   +M L     
Sbjct:   374 LLNLEELDISHNNFTGAIPPTI-SKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSF 432

Query:   295 -----TTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM 349
                  T+  + L    DL++N+  G I ++IC+     +++ FL LS N FSG IP C  
Sbjct:   433 SSFENTSQEEALIEELDLNSNSFQGPIPYMICK----LSSLGFLDLSNNLFSGSIPSCIR 488

Query:   350 NWL-RLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLG 408
             N+   ++ LNLG NNF+G+LP                       P S  N  +LE++++ 
Sbjct:   489 NFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVE 548

Query:   409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAF--LQILDVASNSLSGTIP 466
              N++    PSW+ E    L +LNLRSNKF+G    +   + F  L+I+D++ N+ SGT+P
Sbjct:   549 SNKIKDIFPSWL-ESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLP 607

Query:   467 RC-INNLSAMA-ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSI 524
                 +N   M  +T+  DQ    Y +         + +  +V KGV + +  I    R+I
Sbjct:   608 PYYFSNWKDMTTLTEEMDQ----YMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAI 663

Query:   525 DVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP 584
             D S N  +G IP  +  L+ L+ LNLS N  T  IP  +  +  +E+LD+S N+LSGQIP
Sbjct:   664 DFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIP 723

Query:   585 QXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAGND-LCGDPLSN-CTEKNVLVP 642
             Q                   G +P  TQ Q    SSF  N  L G  L + C +   L P
Sbjct:   724 QDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRDTGALNP 781

Query:   643 XXXXXXXXXXXXXXXVDWLLYISMALGFVVGFWC--FIGSLLI--NRRW 687
                             +W   ++ A+ +  G  C   IG      N  W
Sbjct:   782 TSQLPEDLSEAEENMFNW---VAAAIAYGPGVLCGLVIGHFYTSHNHEW 827

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 216/733 (29%), Positives = 324/733 (44%)

Query:     1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
             LS    QG+IPS +GNL+ L YLDLS N+L       +  +N LE++ ++ N L GN+ +
Sbjct:   119 LSHCNLQGEIPSSIGNLSHLTYLDLSFNQLVGEFPVSIGNLNQLEYIDLWVNALGGNIPT 178

Query:    61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRF--TKLSQDISEI------- 111
                 NLT +  L+L +N   GG I  S      +   S  +  + +S D+S++       
Sbjct:   179 -SFANLTKLSELHLRQNQFTGGDIVLSNLTSLSIVDLSSNYFNSTISADLSQLHNLERFW 237

Query:   112 ------LGIFSA--CVANELESLRLGSSQIFGHLT-NQLRRFKRLNSLDLSNTILDGSIP 162
                    G F +   +   L  + L  +Q  G +         +L  LD+S   LDG IP
Sbjct:   238 VSENSFFGPFPSFLLMIPSLVDICLSENQFEGPINFGNTTSSSKLTELDVSYNNLDGLIP 297

Query:   163 FSLGQISNLEYLDLSNNKLNGTV-SEIH-FVNLTKLAFFRAN-GN---SLIFKINPNWVP 216
              S+  + +LE+L+LS+N   G V S I   VNL  L     N G    S IFK+      
Sbjct:   298 KSISTLVSLEHLELSHNNFRGQVPSSISKLVNLDGLYLSHNNFGGQVPSSIFKL------ 351

Query:   217 PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
                L  L+L     G R P  +     L+ LD+S  +    +P+  W S  +   +++S 
Sbjct:   352 -VNLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEGHVPQCIWRSS-KLDSVDLS- 408

Query:   277 NQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS 336
                Y     F      ++    + L   +DLS+N+L G I   IC    FS    FL  S
Sbjct:   409 ---YNSFNSFGR----ILELGDESLERDWDLSSNSLQGPIPQWICNFRFFS----FLDFS 457

Query:   337 KNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSF 396
              N+ +G IP C  N      LNL +N+ +G +P                       P SF
Sbjct:   458 NNHLNGSIPQCLKNSTDFYMLNLRNNSLSGFMPDFCMDGSMLGSLDVSLNNLVGKLPESF 517

Query:   397 KNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAF--LQIL 454
              N   +E L++  N++  + P W+G     L +L LRSN F+G        L F  ++I+
Sbjct:   518 INCEWMEYLNVRGNKIKDTFPVWLGS-LQYLTVLVLRSNTFYGPVYKASAYLGFPSMRIM 576

Query:   455 DVASNSLSGTIPR-CINNLSAMA-------ITDSYDQAVILYSSLRSEGQSEIFEDASLV 506
             D+++N+  G++P+    N + M+       +T  Y + + +  S    G     +   LV
Sbjct:   577 DISNNNFVGSLPQDYFANWTEMSSVWQRPMLTLDYKRNIAIPGS-NYMGDDNHQDSIDLV 635

Query:   507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM 566
              KGV  ++  I    + ID S N FSG IP  +  L  L  LNLS N  TG IP ++  +
Sbjct:   636 YKGVDTDFEQIFGGFKVIDFSGNRFSGHIPRSIGLLSELLHLNLSGNAFTGNIPPSLASI 695

Query:   567 RSIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAGND- 625
               +E+LDLS N LSG+IP+                   G +P STQ  S   SSF GN  
Sbjct:   696 TKLETLDLSRNNLSGEIPRGLGKLSFLSNINFSHNHLEGLVPQSTQFGSQNCSSFMGNPR 755

Query:   626 LCG-DPLSNCTEKNVLVPXXXXXXXXXXXXXXXVDWLLYISMALGFVVGFWC--FIGSLL 682
             L G D +  C E +V +P               V  L +I+ A+ F  G +C   IG + 
Sbjct:   756 LYGLDQI--CGETHVPIPTSLHPEEPLLEPEETV--LNWIAAAIAFGPGVFCGLVIGHIF 811

Query:   683 IN--RRW-RCKYC 692
              +   +W   K+C
Sbjct:   812 TSYKHKWLMAKFC 824

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 213/721 (29%), Positives = 336/721 (46%)

Query:    12 SRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNV-SSLGLENLTSIK 70
             S L  L  L+ L L SN L+  +   +  +  L+ L + +  L G + SSLG  NL+ + 
Sbjct:    44 SSLFRLQHLQKLVLGSNHLSGILPDSIGNLKRLKVLVLVNCNLFGKIPSSLG--NLSYLT 101

Query:    71 RLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQ-DI--SEILGIFSACVAN--ELES 125
              L LS ND    + P S G L +LT   ++ + ++  D+  +++ G+  + +++  +LE+
Sbjct:   102 HLDLSYND-FTSEGPDSMGNLNRLTDMLLKLSSVTWIDLGDNQLKGMLPSNMSSLSKLEA 160

Query:   126 LRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQIS---NLEYLDLSNNKLN 182
               +  +   G + + L     L  L L      G  PF +G IS   NL+ L++  N  N
Sbjct:   161 FDISGNSFSGTIPSSLFMIPSLILLHLGRNDFSG--PFEIGNISSPSNLQLLNIGRNNFN 218

Query:   183 GTVSEIH-FVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQ 241
               + ++  F  L  L +   +G +L  KI+     P  +  L L SC++   FP +L++Q
Sbjct:   219 PDIVDLSIFSPLLSLGYLDVSGINL--KISSTVSLPSPIEYLGLLSCNIS-EFPKFLRNQ 275

Query:   242 RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFD-----------NPS 290
               L  LDIS+ +I  ++P   W S+ +  Y+NIS N   G     D           + S
Sbjct:   276 TSLEYLDISANQIEGQVPEWLW-SLPELRYVNISHNSFNGFEGPADVIQGGRELLVLDIS 334

Query:   291 MPLITTPSDLLGPIFDL-----SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP 345
               +   P  LL P+  +     SNN  SG I   IC+     +N+  L LS NNFSG IP
Sbjct:   335 SNIFQDPFPLL-PVVSMNYLFSSNNRFSGEIPKTICE----LDNLRILVLSNNNFSGSIP 389

Query:   346 DCWMNWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVL 405
              C+ N L L  L+L +NN +G  P                       P S  N S +E L
Sbjct:   390 RCFEN-LHLYVLHLRNNNLSGIFP-EEAISHHLQSFDVGHNLFSGELPKSLINCSDIEFL 447

Query:   406 DLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG--LAF--LQILDVASNSL 461
             ++ +N +  + PSW+ E    L+IL LRSN+F+G  PI   G  L+F  L+I D++ N  
Sbjct:   448 NVEDNRINDTFPSWL-ELLPNLQILVLRSNEFYG--PIFSPGDSLSFSRLRIFDISENRF 504

Query:   462 SGTIPR-CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEY-NSILN 519
             +G +P       S M+     D  +I Y+ +    +    +  +L+ KG+ +E   S   
Sbjct:   505 TGVLPSDYFVGWSVMSSVVDIDGRIIQYT-VTGIDRDFYHKSVALINKGLKMELVGSGFT 563

Query:   520 LVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQL 579
             + ++IDVS N   G+IP  +  L+ +  L++S+N  TG IP ++  + +++SLDLS N+L
Sbjct:   564 IYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNRL 623

Query:   580 SGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAGND-LCGDPL-SNCTEK 637
             SG IP                    G IP +TQ+Q+  +SSF  N  LCG PL   C  +
Sbjct:   624 SGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLCGAPLLKKCGGE 683

Query:   638 NVLVPXXXXXXXXXXXXXXXVDWLLYISMALGFVVGFWC--FIGSLLIN--RRWRCKYCH 693
                                   W   I+ A+G+V G  C   IG +L++  R W  +   
Sbjct:   684 EEATKQEQDEDKEEEDQVFS--W---IAAAIGYVPGVVCGLTIGHILVSHKRDWFMRIVS 738

Query:   694 F 694
             F
Sbjct:   739 F 739

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 2.4e-56, P = 2.4e-56
 Identities = 216/719 (30%), Positives = 324/719 (45%)

Query:     1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
             L  N F G+IPS LGNL+ L +LDLS+N     +      +N L  L + +N+L GN+  
Sbjct:   166 LYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLP- 224

Query:    61 LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L + NLT +  + LS N +  G +P +   L  L SFS         I   L    +   
Sbjct:   225 LEVINLTKLSEISLSHN-QFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSITL 283

Query:   121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
               L++ +L  +  FG++++       L  L L    L G IP S+ ++ NL  LDLS+  
Sbjct:   284 IFLDNNQLSGTLEFGNISSP----SNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFN 339

Query:   181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP-FQLTV-LELRSCHL--GPRFPL 236
             + G V    F +L  L     + ++    I+ N V   F++ + L+L   H+    +  +
Sbjct:   340 IQGQVDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSV 399

Query:   237 WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKF---------- 286
                    +  L++S   I+ + P     +  Q   L+IS N+I G +P +          
Sbjct:   400 SDPPLGLIGSLNLSGCGIT-EFP-DILRTQRQMRTLDISNNKIKGQVPSWLLLQLEYMHI 457

Query:   287 -DNP------SMPLITT--PSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSK 337
              +N       S  L  T  P   +   F  SNN  SG I   IC       ++  L LS 
Sbjct:   458 SNNNFIGFERSTKLEKTVVPKPSMKHFFG-SNNNFSGKIPSFICS----LRSLIILDLSN 512

Query:   338 NNFSGDIPDCWMNWLR-LRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSF 396
             NNFSG IP C   +   L  LNL  N  +GSLP                       P S 
Sbjct:   513 NNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTIIKSLRSLDVSHNELEGKL--PRSL 570

Query:   397 KNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDV 456
              +FS+LEVL++  N +  + P W+      L++L LRSN FHG   I       L+I+D+
Sbjct:   571 IHFSTLEVLNVESNRINDTFPFWLSS-LKKLQVLVLRSNAFHGR--IHKTRFPKLRIIDI 627

Query:   457 ASNSLSGTIPR-CINNLSAM-AITDSYDQAVILYSSLRSEGQSEIFEDASLVM-KGVLVE 513
             + N  +GT+P  C    + M ++  + D+    Y        S  + D+ ++M KG+ +E
Sbjct:   628 SRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMG------SGYYHDSMVLMNKGLEME 681

Query:   514 YNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLD 573
                IL +  ++D S N F GEIP  +  L+ L  LNLS N  TG IP ++G +R +ESLD
Sbjct:   682 LVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLD 741

Query:   574 LSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAGN-DLCGDPLS 632
             +S N+LSG+IPQ                  VG++P  TQ ++  ASSF  N  LCG PL 
Sbjct:   742 VSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLE 801

Query:   633 NCTEKNVLVPXXXXXXXXXXXXXXXVDWLLYISMALGFVVGF--WCFIGSLLINR--RW 687
              C   +   P               + W   I+ A+GF  G      IG ++++   RW
Sbjct:   802 ECRVVHEPTPSGESETLESEQV---LSW---IAAAIGFTPGIVLGLTIGHIVLSSKPRW 854

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	743
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-55
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.004
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  205 bits (522), Expect = 2e-55
 Identities = 182/632 (28%), Positives = 290/632 (45%), Gaps = 102/632 (16%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKV-NDLEFLSVYSNRLQGNVS 59
           LSG    G+I S +  L  ++ ++LS+N+L+  +   +    + L +L++ +N   G++ 
Sbjct: 76  LSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP 135

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
              + NL +   L LS N+ L G+IP   G        S++   L  ++  ++G     +
Sbjct: 136 RGSIPNLET---LDLS-NNMLSGEIPNDIGSF-----SSLKVLDLGGNV--LVGKIPNSL 184

Query: 120 AN--ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS 177
            N   LE L L S+Q+ G +  +L + K L  + L    L G IP+ +G +++L +LDL 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 178 NNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLW 237
            N L G +      NL  L +     N L   I P+     +L  L+L    L    P  
Sbjct: 245 YNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 238 LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTP 297
           +   + L  L + S   + KIP     S+ +   L +  N+  G IPK            
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPK------------ 350

Query: 298 SDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRAL 357
                   +L  +                 NN+  L LS NN +G+IP+   +   L  L
Sbjct: 351 --------NLGKH-----------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKL 385

Query: 358 NLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP 417
            L  N+  G +P S+G   SL  + L++N  SG +P+ F     +  LD+  N L G I 
Sbjct: 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445

Query: 418 SWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477
           S   +  S L++L+L  NKF G  P    G   L+ LD++ N  SG +PR + +L     
Sbjct: 446 SRKWDMPS-LQMLSLARNKFFGGLP-DSFGSKRLENLDLSRNQFSGAVPRKLGSL----- 498

Query: 478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV 537
                              SE+ +                      + +S+N  SGEIP 
Sbjct: 499 -------------------SELMQ----------------------LKLSENKLSGEIPD 517

Query: 538 EVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLN 597
           E+++ + L SL+LSHN L+G+IP +   M  +  LDLS NQLSG+IP+++ N+  L  +N
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577

Query: 598 LSNNNLVGKIPSSTQLQSFGASSFAGN-DLCG 628
           +S+N+L G +PS+    +  AS+ AGN DLCG
Sbjct: 578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  187 bits (476), Expect = 2e-49
 Identities = 180/601 (29%), Positives = 285/601 (47%), Gaps = 54/601 (8%)

Query: 17  LTSLKYLDLSSNELNST----VLGWLSKVND-LEFLSVYSNRLQ-GNVSSLGLENLTSIK 70
           +  L +L L+ + L++     +L + S +ND L++LS +++         +   N + + 
Sbjct: 13  IFMLFFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRVV 72

Query: 71  RLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGS 130
            + LS  + + GKI ++  +L  + + ++   +LS  I +   IF+    + L  L L +
Sbjct: 73  SIDLSGKN-ISGKISSAIFRLPYIQTINLSNNQLSGPIPD--DIFTTS--SSLRYLNLSN 127

Query: 131 SQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHF 190
           +   G +         L +LDLSN +L G IP  +G  S+L+ LDL  N L G +     
Sbjct: 128 NNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP-NSL 184

Query: 191 VNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDIS 250
            NLT L F     N L+ +I         L  + L   +L    P  +     LN LD+ 
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244

Query: 251 STRISAKIPRGFWN-SIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSN 309
              ++  IP    N    QY +L    N++ G IP        LI+          DLS+
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFL--YQNKLSGPIPPSIFSLQKLIS---------LDLSD 293

Query: 310 NALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLP 369
           N+LSG I  L+ Q +N    +E L L  NNF+G IP    +  RL+ L L  N F+G +P
Sbjct: 294 NSLSGEIPELVIQLQN----LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349

Query: 370 MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI 429
            ++G  ++L  L+L  N L+G IP    +  +L  L L  N L G IP  +G   S L+ 
Sbjct: 350 KNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS-LRR 408

Query: 430 LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYS 489
           + L+ N F G+ P +   L  +  LD+++N+L G I     ++ ++ +         L  
Sbjct: 409 VRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS-------LAR 461

Query: 490 SLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLN 549
           +    G  + F    L                 ++D+S+N FSG +P ++ +L  L  L 
Sbjct: 462 NKFFGGLPDSFGSKRL----------------ENLDLSRNQFSGAVPRKLGSLSELMQLK 505

Query: 550 LSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609
           LS N L+G IPD +   + + SLDLS NQLSGQIP S S +  L+ L+LS N L G+IP 
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 610 S 610
           +
Sbjct: 566 N 566

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 83.3 bits (206), Expect = 1e-16
 Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 3/101 (2%)

Query: 533 GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
           G IP +++ L+ LQS+NLS N + G IP ++G + S+E LDLS N  +G IP+S+  L+ 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 593 LNHLNLSNNNLVGKIPSSTQLQSFGASSFAGND---LCGDP 630
           L  LNL+ N+L G++P++   +    +SF   D   LCG P
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 1e-12
 Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 321 CQGENFSNN--IEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSL 378
           CQ ++      I+ L L      G IP+       L+++NL  N+  G++P S+G+++SL
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468

Query: 379 LSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGER 423
             L+L  N  +G IP S    +SL +L+L  N L G +P+ +G R
Sbjct: 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 26/117 (22%)

Query: 350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE 409
            W  +  L L +    G +P  I  L  L S+NL  N + G IP S  + +SLEVLDL  
Sbjct: 417 KWF-IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY 475

Query: 410 NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
           N   GSIP  +G+                         L  L+IL++  NSLSG +P
Sbjct: 476 NSFNGSIPESLGQ-------------------------LTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 4e-11
 Identities = 27/81 (33%), Positives = 51/81 (62%)

Query: 507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM 566
           ++G +    S L  ++SI++S N   G IP  + ++  L+ L+LS+N   G IP+++G +
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 567 RSIESLDLSANQLSGQIPQSM 587
            S+  L+L+ N LSG++P ++
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 9e-10
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
           ++ L L +  + G + N + + + L S++LS   + G+IP SLG I++LE LDLS N  N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 183 GTVSEIHFVNLTKLAFFRANGNSL 206
           G++ E     LT L     NGNSL
Sbjct: 480 GSIPE-SLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 548 LNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKI 607
           L L +  L G IP++I  +R ++S++LS N + G IP S+ +++ L  L+LS N+  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 608 PSST-QLQSFGASSFAGNDLCG 628
           P S  QL S    +  GN L G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 27/63 (42%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNV-S 59
           LSGN  +G IP  LG++TSL+ LDLS N  N ++   L ++  L  L++  N L G V +
Sbjct: 449 LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508

Query: 60  SLG 62
           +LG
Sbjct: 509 ALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 9e-06
 Identities = 24/60 (40%), Positives = 35/60 (58%)

Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
            L+SL+LS+N LT         + +++ LDLS N L+   P++ S L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 47.7 bits (114), Expect = 1e-05
 Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNF----SGDIPDCWMNWLRLRALNLGH 361
           +L+NN +  +    + +G   + N+E L L+ N      +  + +   +   L  LNLG 
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 362 NNFTGS-----LPMSIGTLSSLLSLNLRNNIL----SGIIPTSFKNFSSLEVLDLGENEL 412
           NN T +         +    SLL+L+L  N +    +  +        SL  LDL  N+ 
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 26/63 (41%), Positives = 38/63 (60%)

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
           L+S+ L  + I G++   L     L  LDLS    +GSIP SLGQ+++L  L+L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 183 GTV 185
           G V
Sbjct: 504 GRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 3e-05
 Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT 464
           L L    L G IP+ I  +   L+ +NL  N   G+ P  L  +  L++LD++ NS +G+
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 465 IPRCINNLSAMAI 477
           IP  +  L+++ I
Sbjct: 482 IPESLGQLTSLRI 494

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.3 bits (110), Expect = 5e-05
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 4   NQ-FQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNV-SSL 61
           NQ  +G IP+ +  L  L+ ++LS N +   +   L  +  LE L +  N   G++  SL
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 62  GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFT 102
           G   LTS++ L L+ N  L G++P + G    L   S  FT
Sbjct: 487 GQ--LTSLRILNLNGN-SLSGRVPAALGGR-LLHRASFNFT 523

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
            L++L+L +N  T     +   L +L  L+L  N L+ I P +F    SL  LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 46/135 (34%)

Query: 430 LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYS 489
           L L +    G  P  +  L  LQ ++++ NS+ G IP  + +++++ +            
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEV------------ 470

Query: 490 SLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLN 549
                                             +D+S N F+G IP  +  L  L+ LN
Sbjct: 471 ----------------------------------LDLSYNSFNGSIPESLGQLTSLRILN 496

Query: 550 LSHNLLTGRIPDNIG 564
           L+ N L+GR+P  +G
Sbjct: 497 LNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 146 RLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS 205
            L SLDLSN  L      +   + NL+ LDLS N L  ++S   F  L  L     +GN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLT-SISPEAFSGLPSLRSLDLSGNN 59

Query: 206 L 206
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 0.002
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610
           I+ L L    L G IP  +S L  L  +NLS N++ G IP S
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS 461

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS NQ  GQIP+    +  L  LDLS N+L+  +   L  V  L  +++  N L G++ S
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCK 93
            G     +I    ++ N +L G   TS    CK
Sbjct: 590 TGA--FLAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 66/208 (31%), Positives = 101/208 (48%), Gaps = 18/208 (8%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L+ N+ +  I S L  LT+L  LDL +N +           ++L+ L +  N+++     
Sbjct: 100 LNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLP 156

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L NL ++K L LS ND     +P     L  L +  +   K+S D+   +      + 
Sbjct: 157 SPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-----LL 208

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
           + LE L L ++ I   L+  L   K L+ L+LSN  L   +P S+G +SNLE LDLSNN+
Sbjct: 209 SALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQ 266

Query: 181 LNGTVSEIH-FVNLTKLAFFRANGNSLI 207
           +    S I    +LT L     +GNSL 
Sbjct: 267 I----SSISSLGSLTNLRELDLSGNSLS 290

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	743
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.66
PLN03150	623	hypothetical protein; Provisional	99.55
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.32
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
PLN03150	623	hypothetical protein; Provisional	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.76
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.58
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.56
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.09
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
PRK15386	426	type III secretion protein GogB; Provisional	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.8
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.56
PRK15386	426	type III secretion protein GogB; Provisional	97.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.43
KOG4341	483	consensus F-box protein containing LRR [General fu	97.16
KOG4341	483	consensus F-box protein containing LRR [General fu	97.0
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.66
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.63
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.5
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.24
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.57
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.11
KOG4308	478	consensus LRR-containing protein [Function unknown	94.08
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.9
KOG4308	478	consensus LRR-containing protein [Function unknown	92.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.58
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.12
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.02
smart00370	26	LRR Leucine-rich repeats, outliers.	92.02
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.18
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.69
smart00370	26	LRR Leucine-rich repeats, outliers.	89.69
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.97
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.61
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	81.27

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-65  Score=610.75  Aligned_cols=541  Identities=32%  Similarity=0.490  Sum_probs=381.4

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683           19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS   98 (743)
Q Consensus        19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~   98 (743)
                      +++.|+|++|.+.+..+..|..+++|++|+|++|.+++.+|...+.++++|++|+++ +|.+.+.+|.  ..+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls-~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS-NNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECc-CCccccccCc--cccCCCCEEE
Confidence            455555555555555555555555555555555555545554334455555555555 3344444442  2345555555


Q ss_pred             ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccC
Q 041683           99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN  178 (743)
Q Consensus        99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  178 (743)
                      +++|.+.+..|..++.+.     +|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..++++++|++|++++
T Consensus       147 Ls~n~~~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFS-----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY  221 (968)
T ss_pred             CcCCcccccCChHHhcCC-----CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence            555555555555555544     555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcccc
Q 041683          179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKI  258 (743)
Q Consensus       179 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  258 (743)
                      |++.+.+|. .+.++++|++|++++|.+.+..+..+..+.+|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+
T Consensus       222 n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~  300 (968)
T PLN00113        222 NNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI  300 (968)
T ss_pred             CccCCcCCh-hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence            555544444 3555555555555555555555555555555555555555555555555555555555555555555444


Q ss_pred             ChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCC
Q 041683          259 PRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKN  338 (743)
Q Consensus       259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n  338 (743)
                      |..+ ..+++|+.|++++|.+.+..|.....       ...+.  .+++++|.+.+.+|..+    ..+++|+.|++++|
T Consensus       301 p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~-------l~~L~--~L~L~~n~l~~~~p~~l----~~~~~L~~L~Ls~n  366 (968)
T PLN00113        301 PELV-IQLQNLEILHLFSNNFTGKIPVALTS-------LPRLQ--VLQLWSNKFSGEIPKNL----GKHNNLTVLDLSTN  366 (968)
T ss_pred             ChhH-cCCCCCcEEECCCCccCCcCChhHhc-------CCCCC--EEECcCCCCcCcCChHH----hCCCCCcEEECCCC
Confidence            4433 23455555555555554443321000       00011  44555555555444333    34678999999999


Q ss_pred             cCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCch
Q 041683          339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS  418 (743)
Q Consensus       339 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  418 (743)
                      ++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|+.|++++|.+.+.+|.
T Consensus       367 ~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  446 (968)
T PLN00113        367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS  446 (968)
T ss_pred             eeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence            99988999999999999999999999999999999999999999999999988999999999999999999999988877


Q ss_pred             hHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcc
Q 041683          419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSE  498 (743)
Q Consensus       419 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  498 (743)
                      ... .+++|+.|++++|++.+..|..+ ..++|+.|++++|++.+..|..+.+++.                        
T Consensus       447 ~~~-~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~------------------------  500 (968)
T PLN00113        447 RKW-DMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSE------------------------  500 (968)
T ss_pred             hhc-cCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhc------------------------
Confidence            665 68999999999999998888765 4688999999999999888888776665                        


Q ss_pred             cccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCc
Q 041683          499 IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQ  578 (743)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  578 (743)
                                            |+.|++++|++.+.+|..+.++++|++|+|++|.+++.+|..|..+++|+.|+|++|+
T Consensus       501 ----------------------L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  558 (968)
T PLN00113        501 ----------------------LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ  558 (968)
T ss_pred             ----------------------cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence                                  4899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCCC
Q 041683          579 LSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGDP  630 (743)
Q Consensus       579 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~  630 (743)
                      +++.+|..+..+++|+.|++++|+++|.+|..+++.++...++.|| .+||.+
T Consensus       559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999999999999999999999999999999999999999 799865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.2e-59  Score=554.08  Aligned_cols=516  Identities=30%  Similarity=0.478  Sum_probs=453.1

Q ss_pred             CCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhcc-CCCCCCEEEccCCcCcccchhhhhcccccc
Q 041683           41 VNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFG-KLCKLTSFSMRFTKLSQDISEILGIFSACV  119 (743)
Q Consensus        41 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~  119 (743)
                      ..+++.|+|++|.+++.++. .|..+++|++|+|+ +|.+.+.+|..+. ++++|++|++++|.+++.+|.  +.++   
T Consensus        68 ~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls-~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~---  140 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLS-NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP---  140 (968)
T ss_pred             CCcEEEEEecCCCccccCCh-HHhCCCCCCEEECC-CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC---
Confidence            45799999999999988877 89999999999999 6778878887654 999999999999999887764  2344   


Q ss_pred             cCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEE
Q 041683          120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFF  199 (743)
Q Consensus       120 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  199 (743)
                        +|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|. .+..+++|++|
T Consensus       141 --~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L  217 (968)
T PLN00113        141 --NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWI  217 (968)
T ss_pred             --CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh-HHcCcCCccEE
Confidence              899999999999999999999999999999999999999999999999999999999999988887 79999999999


Q ss_pred             ECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcc
Q 041683          200 RANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI  279 (743)
Q Consensus       200 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l  279 (743)
                      ++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSL  296 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCee
Confidence            9999999999999999999999999999999999999999999999999999999888887764 578999999999999


Q ss_pred             ccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEEC
Q 041683          280 YGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNL  359 (743)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  359 (743)
                      .+.+|.....       ...+.  .+++++|.+.+..|..+    ..+++|+.|++++|.+.+..|..+..+++|+.|++
T Consensus       297 ~~~~p~~~~~-------l~~L~--~L~l~~n~~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L  363 (968)
T PLN00113        297 SGEIPELVIQ-------LQNLE--ILHLFSNNFTGKIPVAL----TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDL  363 (968)
T ss_pred             ccCCChhHcC-------CCCCc--EEECCCCccCCcCChhH----hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEEC
Confidence            8877752111       01112  67888888887776544    34788889999999888888888888888999999


Q ss_pred             CCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcc
Q 041683          360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHG  439 (743)
Q Consensus       360 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~  439 (743)
                      ++|++.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.+|..+. .++.|+.|++++|.+.+
T Consensus       364 s~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~  442 (968)
T PLN00113        364 STNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQG  442 (968)
T ss_pred             CCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccC
Confidence            99988888888888888899999999988888888888888999999999988888887665 68889999999998888


Q ss_pred             cCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccc
Q 041683          440 DFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILN  519 (743)
Q Consensus       440 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  519 (743)
                      ..+..+..+++|+.|++++|++.+.+|..+.                                               .+
T Consensus       443 ~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-----------------------------------------------~~  475 (968)
T PLN00113        443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFG-----------------------------------------------SK  475 (968)
T ss_pred             ccChhhccCCCCcEEECcCceeeeecCcccc-----------------------------------------------cc
Confidence            8888888888899999999988877776432                                               13


Q ss_pred             cccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCc
Q 041683          520 LVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS  599 (743)
Q Consensus       520 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  599 (743)
                      .|+.||+++|++++.+|..+..+++|++|+|++|++.+.+|+.+..+++|++|++++|.+++.+|..+..+++|+.||++
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCC-cccCCCCCccccCCCCCC
Q 041683          600 NNNLVGKIPSS-TQLQSFGASSFAGNDLCG  628 (743)
Q Consensus       600 ~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~  628 (743)
                      +|+++|.+|.. ..+..+..+++++|.+.|
T Consensus       556 ~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999976 456778888999997655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-41  Score=338.09  Aligned_cols=377  Identities=22%  Similarity=0.238  Sum_probs=306.3

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      .-+.|++++|++...-+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.|+ .+....++.++.|+.|||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence            5677999999998888888999999999999999998 67766666677999999999998 676668999999999999


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      +.|.|.......|..-.+++.|+|++|+|+..-...|..+.+|..|.|+.|.++ .+|...|..+++|+.|+|..|+|.-
T Consensus       157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceee
Confidence            999998888888888889999999999999888889999999999999999997 6888888889999999999998751


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683          282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH  361 (743)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  361 (743)
                      .                         .            .-.+..+++|+.|.+..|.+.....+.|..+.++++|+|+.
T Consensus       236 v-------------------------e------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~  278 (873)
T KOG4194|consen  236 V-------------------------E------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET  278 (873)
T ss_pred             e-------------------------h------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence            0                         0            01234478899999999999988889999999999999999


Q ss_pred             CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccC
Q 041683          362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF  441 (743)
Q Consensus       362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  441 (743)
                      |++......++.++++|+.|++++|.|..+.++++..+++|++|+|++|+|+ .+++..+..+..|++|+|++|.+...-
T Consensus       279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~  357 (873)
T KOG4194|consen  279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLA  357 (873)
T ss_pred             chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHH
Confidence            9999877788899999999999999999999999999999999999999998 788777778999999999999999777


Q ss_pred             CccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccc
Q 041683          442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLV  521 (743)
Q Consensus       442 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  521 (743)
                      ...|..+++|+.|||++|.++..+.+.                                                     
T Consensus       358 e~af~~lssL~~LdLr~N~ls~~IEDa-----------------------------------------------------  384 (873)
T KOG4194|consen  358 EGAFVGLSSLHKLDLRSNELSWCIEDA-----------------------------------------------------  384 (873)
T ss_pred             hhHHHHhhhhhhhcCcCCeEEEEEecc-----------------------------------------------------
Confidence            778999999999999999988655432                                                     


Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                                    ...|.++++|+.|++.+|++..+.-.+|.++.+|++|||.+|.|..+-|.+|..+ .|+.|-+..-
T Consensus       385 --------------a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  385 --------------AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             --------------hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence                          1224455555666666666554444455556666666666666655555555555 5555555555


Q ss_pred             cccccC
Q 041683          602 NLVGKI  607 (743)
Q Consensus       602 ~l~~~~  607 (743)
                      .+.|.+
T Consensus       450 sflCDC  455 (873)
T KOG4194|consen  450 SFLCDC  455 (873)
T ss_pred             ceEEec
Confidence            544443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-40  Score=330.78  Aligned_cols=389  Identities=23%  Similarity=0.237  Sum_probs=205.1

Q ss_pred             CEEECCCCCCCCCCchhhcCC--CCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683           21 KYLDLSSNELNSTVLGWLSKV--NDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS   98 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~   98 (743)
                      +.||.+++.+..+....+.++  +.-+.||+++|.+. .+.-..|.++++|+.+++. +|.+ ..+|.......+|++|+
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~-~N~L-t~IP~f~~~sghl~~L~  131 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLN-KNEL-TRIPRFGHESGHLEKLD  131 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeec-cchh-hhcccccccccceeEEe
Confidence            344555554443332222222  12333555555554 3333244555555555554 3333 23444444444455555


Q ss_pred             ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccC
Q 041683           99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN  178 (743)
Q Consensus        99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  178 (743)
                      |.+|.++..-.+.+..++     .|+.|||+.|.|+......|..-.++++|+|++|.|+......|..+.+|..|.|++
T Consensus       132 L~~N~I~sv~se~L~~l~-----alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr  206 (873)
T KOG4194|consen  132 LRHNLISSVTSEELSALP-----ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR  206 (873)
T ss_pred             eeccccccccHHHHHhHh-----hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc
Confidence            555555544444444444     455555555555444444444445555555555555544444555555555555555


Q ss_pred             CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcccc
Q 041683          179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKI  258 (743)
Q Consensus       179 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  258 (743)
                      |+++ .+|...|.++++|+.|+|..|+|.....-.|.++++|+.|.+..|.+.......|..+.++++|+|+.|+++..-
T Consensus       207 Nrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn  285 (873)
T KOG4194|consen  207 NRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN  285 (873)
T ss_pred             Cccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence            5554 444445555555555555555554444445555555555555555555444445555555555555555554333


Q ss_pred             ChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCC
Q 041683          259 PRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKN  338 (743)
Q Consensus       259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n  338 (743)
                      ..++++ ++.|+.|++++|.|...-                                     .+.++++++|++|+|++|
T Consensus       286 ~g~lfg-Lt~L~~L~lS~NaI~rih-------------------------------------~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  286 EGWLFG-LTSLEQLDLSYNAIQRIH-------------------------------------IDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             cccccc-cchhhhhccchhhhheee-------------------------------------cchhhhcccceeEecccc
Confidence            333332 455555555555443110                                     122333556666666666


Q ss_pred             cCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCC---cccCCCCCCCEEeCCCCcCccc
Q 041683          339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIP---TSFKNFSSLEVLDLGENELVGS  415 (743)
Q Consensus       339 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~~  415 (743)
                      +|+...++.|..+..|++|+|++|.+...-..+|.++.+|++|+|++|.++..+.   ..|.++++|+.|++.+|++. .
T Consensus       328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~  406 (873)
T KOG4194|consen  328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-S  406 (873)
T ss_pred             ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-e
Confidence            6666666666666666666666666665555566666666666666666654332   33556666666666666665 6


Q ss_pred             CchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccC
Q 041683          416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVAS  458 (743)
Q Consensus       416 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  458 (743)
                      +|...+.+++.|+.|+|.+|.|..+-|.+|..+ .|+.|.+..
T Consensus       407 I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  407 IPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             cchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            666666666666666666666666666666666 566665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4e-41  Score=324.02  Aligned_cols=481  Identities=24%  Similarity=0.360  Sum_probs=324.3

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcC
Q 041683            1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDEL   80 (743)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l   80 (743)
                      +++|.++ .+.+++.++..|.+|++++|++.. .|.+++.+..++.|+.++|++. .+|+ .+..+.+|+.|+.++| .+
T Consensus        52 ls~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~~s~n-~~  126 (565)
T KOG0472|consen   52 LSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLDCSSN-EL  126 (565)
T ss_pred             hccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhhcccc-ce
Confidence            4678887 455678999999999999999854 5667899999999999999998 8888 8899999999999944 44


Q ss_pred             CcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccc
Q 041683           81 GGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGS  160 (743)
Q Consensus        81 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~  160 (743)
                      . .+|..++.+..|+.++..+|+++. .|+.+..+.     +|..+++.+|++....|+.+. ++.|++||...|.+. .
T Consensus       127 ~-el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~-----~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  127 K-ELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLS-----KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             e-ecCchHHHHhhhhhhhcccccccc-CchHHHHHH-----HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-c
Confidence            3 578889999999999999999876 566666666     789999999999877777665 999999999999998 7


Q ss_pred             cchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcC
Q 041683          161 IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS  240 (743)
Q Consensus       161 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  240 (743)
                      +|..++.+.+|+.|++.+|++. .+|+  |..+..|++++++.|++..........+.++.+|++++|++. ..|+.+.-
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl  273 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL  273 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence            7889999999999999999998 7885  999999999999999987666566668889999999999997 77888889


Q ss_pred             CCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCC----CCcccCCCCCCCCeEEec-CCcc-cc
Q 041683          241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPS----MPLITTPSDLLGPIFDLS-NNAL-SG  314 (743)
Q Consensus       241 l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~~~~~~~l~~~~l~ls-~n~l-~~  314 (743)
                      +.+|+.||+++|.|++ +|..+.. + .|+.|.+.+|++...-..+....    +++..+  ....+.+.-+ +-.- .+
T Consensus       274 LrsL~rLDlSNN~is~-Lp~sLgn-l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs--~~~~dglS~se~~~e~~~  348 (565)
T KOG0472|consen  274 LRSLERLDLSNNDISS-LPYSLGN-L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS--KIKDDGLSQSEGGTETAM  348 (565)
T ss_pred             hhhhhhhcccCCcccc-CCccccc-c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH--hhccCCCCCCcccccccC
Confidence            9999999999999974 6766544 4 88999999998763211110000    000000  0000000000 0000 00


Q ss_pred             ccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCC--CCCcEEEccCccccccC
Q 041683          315 SIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTL--SSLLSLNLRNNILSGII  392 (743)
Q Consensus       315 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~~~  392 (743)
                      ..+.....                        ......+.+.|++++-+++.+..+.|...  .-....+++.|++. ..
T Consensus       349 t~~~~~~~------------------------~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-el  403 (565)
T KOG0472|consen  349 TLPSESFP------------------------DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-EL  403 (565)
T ss_pred             CCCCCccc------------------------chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hh
Confidence            00000001                        11122344445555544442222222211  12445555555554 33


Q ss_pred             CcccCCCCCCC-EEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccc
Q 041683          393 PTSFKNFSSLE-VLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINN  471 (743)
Q Consensus       393 ~~~~~~l~~L~-~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  471 (743)
                      |..+..+..+. .+.+++|.+. -+|..+. .+++|..|++++|.+. .+|..+..+..|+.||++.|+|. .+|.+...
T Consensus       404 Pk~L~~lkelvT~l~lsnn~is-fv~~~l~-~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~  479 (565)
T KOG0472|consen  404 PKRLVELKELVTDLVLSNNKIS-FVPLELS-QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYE  479 (565)
T ss_pred             hhhhHHHHHHHHHHHhhcCccc-cchHHHH-hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhh
Confidence            43333333322 2334444442 3333333 4566666666666555 45555666666666666666654 44544433


Q ss_pred             cccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCC
Q 041683          472 LSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLS  551 (743)
Q Consensus       472 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  551 (743)
                      +..                                              ++.+-.++|++....|..+.++..|.+|||.
T Consensus       480 lq~----------------------------------------------lEtllas~nqi~~vd~~~l~nm~nL~tLDL~  513 (565)
T KOG0472|consen  480 LQT----------------------------------------------LETLLASNNQIGSVDPSGLKNMRNLTTLDLQ  513 (565)
T ss_pred             HHH----------------------------------------------HHHHHhccccccccChHHhhhhhhcceeccC
Confidence            322                                              2444455567765556668888888888888


Q ss_pred             CCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683          552 HNLLTGRIPDNIGVMRSIESLDLSANQLS  580 (743)
Q Consensus       552 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (743)
                      +|.+. .+|..+++|++|++|++++|.+.
T Consensus       514 nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  514 NNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             CCchh-hCChhhccccceeEEEecCCccC
Confidence            88888 77778888888888888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=1e-39  Score=314.36  Aligned_cols=477  Identities=24%  Similarity=0.328  Sum_probs=275.1

Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEE
Q 041683           18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSF   97 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L   97 (743)
                      ..|+.+++++|.+.... +.+.++..|.+|++.+|++. .+|. +++.+..+..|+.+ .+.+ ..+|..++.+.+|+++
T Consensus        45 v~l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~-aig~l~~l~~l~vs-~n~l-s~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPA-AIGELEALKSLNVS-HNKL-SELPEQIGSLISLVKL  119 (565)
T ss_pred             cchhhhhhccCchhhcc-HhhhcccceeEEEeccchhh-hCCH-HHHHHHHHHHhhcc-cchH-hhccHHHhhhhhhhhh
Confidence            34555556666553332 23555555666666666665 4454 55555556666665 2233 2455555566666666


Q ss_pred             EccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEcc
Q 041683           98 SMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS  177 (743)
Q Consensus        98 ~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  177 (743)
                      ++++|.+.. .++.++.+.     .|+.++..+|++.+ .|.++..+.+|..+++.+|.++...|..+. ++.|++||..
T Consensus       120 ~~s~n~~~e-l~~~i~~~~-----~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~  191 (565)
T KOG0472|consen  120 DCSSNELKE-LPDSIGRLL-----DLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN  191 (565)
T ss_pred             hccccceee-cCchHHHHh-----hhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence            666555543 333344433     45555555555533 334455555555666666655533333332 5556666655


Q ss_pred             CCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccc
Q 041683          178 NNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAK  257 (743)
Q Consensus       178 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~  257 (743)
                      .|-+. .+|. .++.+.+|+.|++..|++...  +.|.++..|+++.++.|++.........+++++..||+.+|+++ .
T Consensus       192 ~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e  266 (565)
T KOG0472|consen  192 SNLLE-TLPP-ELGGLESLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-E  266 (565)
T ss_pred             hhhhh-cCCh-hhcchhhhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-c
Confidence            55554 4444 355555566666666655433  25555555555555555554333334445555555555555554 3


Q ss_pred             cChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcC
Q 041683          258 IPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSK  337 (743)
Q Consensus       258 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~  337 (743)
                      .|+.+.- +.+|.+||+++|.+++..+.                                      ++++ .|+.|-+.+
T Consensus       267 ~Pde~cl-LrsL~rLDlSNN~is~Lp~s--------------------------------------Lgnl-hL~~L~leG  306 (565)
T KOG0472|consen  267 VPDEICL-LRSLERLDLSNNDISSLPYS--------------------------------------LGNL-HLKFLALEG  306 (565)
T ss_pred             CchHHHH-hhhhhhhcccCCccccCCcc--------------------------------------cccc-eeeehhhcC
Confidence            4544432 34455555555555432221                                      2223 455556666


Q ss_pred             CcCcccCCccccCCC--CCCEE-------ECCCCcCc----cc-CCcc---ccCCCCCcEEEccCccccccCCcccCCCC
Q 041683          338 NNFSGDIPDCWMNWL--RLRAL-------NLGHNNFT----GS-LPMS---IGTLSSLLSLNLRNNILSGIIPTSFKNFS  400 (743)
Q Consensus       338 n~l~~~~~~~~~~l~--~L~~L-------~Ls~n~l~----~~-~~~~---~~~l~~L~~L~L~~n~i~~~~~~~~~~l~  400 (743)
                      |.+..+-.+.+..-+  -|++|       -++.-.-.    .. .+..   ...+.+.+.|++++-+++.+..+.|..-.
T Consensus       307 NPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~  386 (565)
T KOG0472|consen  307 NPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAK  386 (565)
T ss_pred             CchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhh
Confidence            655422111111000  01111       01110000    00 0111   12245677888888777744433343221


Q ss_pred             --CCCEEeCCCCcCcccCchhHHhcccCC-cEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccc
Q 041683          401 --SLEVLDLGENELVGSIPSWIGERFSIL-KILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI  477 (743)
Q Consensus       401 --~L~~L~Ls~n~i~~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  477 (743)
                        -...++++.|++. ++|..+.. +..+ +.+.+++|.+. .+|..++.+++|..|++++|.+. .+|..++.+..   
T Consensus       387 ~~~Vt~VnfskNqL~-elPk~L~~-lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~---  459 (565)
T KOG0472|consen  387 SEIVTSVNFSKNQLC-ELPKRLVE-LKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVR---  459 (565)
T ss_pred             hcceEEEecccchHh-hhhhhhHH-HHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhh---
Confidence              2677888888887 77876652 3333 34555666655 67777888888888888888776 66666655544   


Q ss_pred             cCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcc
Q 041683          478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG  557 (743)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  557 (743)
                                                                 |+.||+|+|+|. .+|..+..+..|+.+-.++|++..
T Consensus       460 -------------------------------------------Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  460 -------------------------------------------LQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             -------------------------------------------hheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence                                                       488999999888 788888777788888888888886


Q ss_pred             cCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccc
Q 041683          558 RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV  604 (743)
Q Consensus       558 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  604 (743)
                      ..|+.+.+|.+|..|||.+|.+. .+|..++++++|++|++++|+|.
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            66666888999999999999998 77778899999999999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-37  Score=323.34  Aligned_cols=465  Identities=22%  Similarity=0.252  Sum_probs=236.9

Q ss_pred             CCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCc
Q 041683           44 LEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANEL  123 (743)
Q Consensus        44 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L  123 (743)
                      +..|+++.|.+. ..|-..+++.-+|+.||++ |+.+ +..|..+..+.+|+.|+++.|.+.. .|.....+.     +|
T Consensus        23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~ls-nn~~-~~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~~~~-----~l   93 (1081)
T KOG0618|consen   23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLS-NNQI-SSFPIQITLLSHLRQLNLSRNYIRS-VPSSCSNMR-----NL   93 (1081)
T ss_pred             HHhhhccccccc-cCchHHhhheeeeEEeecc-cccc-ccCCchhhhHHHHhhcccchhhHhh-Cchhhhhhh-----cc
Confidence            444444444443 2222233333334444444 3332 2344444444444444444444332 223333333     45


Q ss_pred             cEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCC
Q 041683          124 ESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG  203 (743)
Q Consensus       124 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  203 (743)
                      +++.|.+|.+ ...|..+..+++|++|+++.|.+. .+|..+..++.++.+..++|.....++.     .. ++.+++..
T Consensus        94 ~~lnL~~n~l-~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~  165 (1081)
T KOG0618|consen   94 QYLNLKNNRL-QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRL  165 (1081)
T ss_pred             hhheeccchh-hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhh
Confidence            5555555444 234455555555555555555555 4455555555555555555521111111     11 44445555


Q ss_pred             CcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCC
Q 041683          204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGI  283 (743)
Q Consensus       204 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  283 (743)
                      |.+.+.+......+..  .|++++|.+.   ...+..+.+|+.|....|++....     ...++++.|+.++|.++...
T Consensus       166 n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~~L~a~~n~l~~~~  235 (1081)
T KOG0618|consen  166 NVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE-----ISGPSLTALYADHNPLTTLD  235 (1081)
T ss_pred             hhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE-----ecCcchheeeeccCcceeec
Confidence            4444433333333322  4555555553   222445555666666666554311     11245666666666554222


Q ss_pred             CCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCc
Q 041683          284 PKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN  363 (743)
Q Consensus       284 ~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  363 (743)
                      +......+         .  .+++++|++++.. +++..    +.+|+.++..+|++. ..|..+....+|+.|.+.+|.
T Consensus       236 ~~p~p~nl---------~--~~dis~n~l~~lp-~wi~~----~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  236 VHPVPLNL---------Q--YLDISHNNLSNLP-EWIGA----CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE  298 (1081)
T ss_pred             cccccccc---------e--eeecchhhhhcch-HHHHh----cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh
Confidence            11110000         0  3333343333322 33322    555666666666654 444445555556666666666


Q ss_pred             CcccCCccccCCCCCcEEEccCccccccCCcccCCCCC-CCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC
Q 041683          364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSS-LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP  442 (743)
Q Consensus       364 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  442 (743)
                      +. -+|....+...|++|+|..|++....+..+..... |+.|+.+.|++. ..|..-......|+.|++.+|.++...-
T Consensus       299 l~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~  376 (1081)
T KOG0618|consen  299 LE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCF  376 (1081)
T ss_pred             hh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccch
Confidence            55 34444455556666666666655333333333322 555555555554 3442222234556677777777765555


Q ss_pred             ccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccccccc
Q 041683          443 IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVR  522 (743)
Q Consensus       443 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  522 (743)
                      ..+.+..+|+.|+|++|++.......+.++..                                              |+
T Consensus       377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~----------------------------------------------Le  410 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE----------------------------------------------LE  410 (1081)
T ss_pred             hhhccccceeeeeecccccccCCHHHHhchHH----------------------------------------------hH
Confidence            55666777777777777776333334444444                                              46


Q ss_pred             EEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCc
Q 041683          523 SIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNN  602 (743)
Q Consensus       523 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  602 (743)
                      .|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++...-......++|++||+++|.
T Consensus       411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            7777777777 56677777777777777777776 566 56777777777777777764432222223677777777776


Q ss_pred             c
Q 041683          603 L  603 (743)
Q Consensus       603 l  603 (743)
                      -
T Consensus       488 ~  488 (1081)
T KOG0618|consen  488 R  488 (1081)
T ss_pred             c
Confidence            3

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-36  Score=321.46  Aligned_cols=462  Identities=26%  Similarity=0.346  Sum_probs=317.9

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683           19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS   98 (743)
Q Consensus        19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~   98 (743)
                      +|+.||+++|++ +..|..+..+++|+.|+++.|.|. .+|. +..++.+|++|.|. |+.+ ...|..+..+++|++|+
T Consensus        46 ~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~lnL~-~n~l-~~lP~~~~~lknl~~Ld  120 (1081)
T KOG0618|consen   46 KLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQYLNLK-NNRL-QSLPASISELKNLQYLD  120 (1081)
T ss_pred             eeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcchhheec-cchh-hcCchhHHhhhcccccc
Confidence            466666666665 334555666666666666666665 5554 56666666666666 4433 34566666666666666


Q ss_pred             ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccC
Q 041683           99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN  178 (743)
Q Consensus        99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  178 (743)
                      ++.|.+.. +|..+..+.     .++.+..++|.....    ++.. .++.+++..|.+.+.++..+..++.  .|+|.+
T Consensus       121 lS~N~f~~-~Pl~i~~lt-----~~~~~~~s~N~~~~~----lg~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~  187 (1081)
T KOG0618|consen  121 LSFNHFGP-IPLVIEVLT-----AEEELAASNNEKIQR----LGQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRY  187 (1081)
T ss_pred             cchhccCC-CchhHHhhh-----HHHHHhhhcchhhhh----hccc-cchhhhhhhhhcccchhcchhhhhe--eeeccc
Confidence            66666543 444444444     455555555521111    1111 1666777777776666666666655  678888


Q ss_pred             CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcccc
Q 041683          179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKI  258 (743)
Q Consensus       179 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  258 (743)
                      |.+. ..   .+..+.+|+.+....|++.....    .-++++.|+.++|.+....+.  ....+|+.+++++|.++ .+
T Consensus       188 N~~~-~~---dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~l  256 (1081)
T KOG0618|consen  188 NEME-VL---DLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NL  256 (1081)
T ss_pred             chhh-hh---hhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cc
Confidence            8765 22   36677777777777777653321    234677788888877633332  22356788888888886 46


Q ss_pred             ChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCC
Q 041683          259 PRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKN  338 (743)
Q Consensus       259 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n  338 (743)
                      |.|+ ..+.+|+.++..+|.++ .+|                                     ..+....+|+.|.+..|
T Consensus       257 p~wi-~~~~nle~l~~n~N~l~-~lp-------------------------------------~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  257 PEWI-GACANLEALNANHNRLV-ALP-------------------------------------LRISRITSLVSLSAAYN  297 (1081)
T ss_pred             hHHH-HhcccceEecccchhHH-hhH-------------------------------------HHHhhhhhHHHHHhhhh
Confidence            6444 44678888888877764 111                                     11222568999999999


Q ss_pred             cCcccCCccccCCCCCCEEECCCCcCcccCCcc-ccCCC-CCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccC
Q 041683          339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMS-IGTLS-SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI  416 (743)
Q Consensus       339 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~  416 (743)
                      .+. .+|+....++.|++|+|..|++. ..|+. +.-.. .|..|+.+.|.+.......-..++.|+.|.+.+|.+++..
T Consensus       298 el~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  298 ELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            998 56777888999999999999998 45543 33333 4788888888887544333345678999999999998654


Q ss_pred             chhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCC
Q 041683          417 PSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQ  496 (743)
Q Consensus       417 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~  496 (743)
                      -.-+ .+..+|+.|+|++|++.......+.++..|+.|+||+|++. .+|+++..+..|                     
T Consensus       376 ~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L---------------------  432 (1081)
T KOG0618|consen  376 FPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL---------------------  432 (1081)
T ss_pred             hhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh---------------------
Confidence            4433 36899999999999999555557899999999999999998 677777776664                     


Q ss_pred             cccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCccc-CCCCCCCCCCccEEECc
Q 041683          497 SEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR-IPDNIGVMRSIESLDLS  575 (743)
Q Consensus       497 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls  575 (743)
                                               ++|...+|++. ..| .+.+++.|+.+|+|.|+++.. +|.... -++|++||++
T Consensus       433 -------------------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlS  484 (1081)
T KOG0618|consen  433 -------------------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLS  484 (1081)
T ss_pred             -------------------------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccccceeecc
Confidence                                     88899999997 666 899999999999999999853 344332 3899999999


Q ss_pred             CCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          576 ANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       576 ~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                      +|.-....-+.|..+.++..+++.-|
T Consensus       485 GN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  485 GNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             CCcccccchhhhHHhhhhhheecccC
Confidence            99965456667777888888888777

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.3e-33  Score=284.32  Aligned_cols=275  Identities=24%  Similarity=0.349  Sum_probs=171.2

Q ss_pred             CcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCcc
Q 041683          233 RFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNAL  312 (743)
Q Consensus       233 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l  312 (743)
                      ..|..+....++-.|+||+|+|. .+|..++.++..|-+|||++|++....|.                           
T Consensus       117 EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ---------------------------  168 (1255)
T KOG0444|consen  117 EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ---------------------------  168 (1255)
T ss_pred             hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH---------------------------
Confidence            44555555556666666666663 56666666666666666666665422221                           


Q ss_pred             ccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCc-ccCCccccCCCCCcEEEccCcccccc
Q 041683          313 SGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT-GSLPMSIGTLSSLLSLNLRNNILSGI  391 (743)
Q Consensus       313 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~  391 (743)
                                 ...+..|++|+|++|.+...--..+..+++|+.|.+++.+-+ .-+|.++.++.+|..++++.|.+. +
T Consensus       169 -----------~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~  236 (1255)
T KOG0444|consen  169 -----------IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I  236 (1255)
T ss_pred             -----------HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence                       122345666666666655322233344556666666665433 245666666777777777777766 5


Q ss_pred             CCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc-ccCcccc
Q 041683          392 IPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG-TIPRCIN  470 (743)
Q Consensus       392 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~  470 (743)
                      .|+.+.++++|+.|+||+|+|+ .+..... ...+|++|+++.|+++ .+|.+++.++.|+.|.+.+|++.- -+|..++
T Consensus       237 vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIG  313 (1255)
T KOG0444|consen  237 VPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIG  313 (1255)
T ss_pred             chHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchh
Confidence            6666777777777777777776 4444443 3456777777777777 667777777777777777776652 2455555


Q ss_pred             ccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeC
Q 041683          471 NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNL  550 (743)
Q Consensus       471 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  550 (743)
                      .+..|                                              +.+..++|.+. ..|+.+..+..|+.|.|
T Consensus       314 KL~~L----------------------------------------------evf~aanN~LE-lVPEglcRC~kL~kL~L  346 (1255)
T KOG0444|consen  314 KLIQL----------------------------------------------EVFHAANNKLE-LVPEGLCRCVKLQKLKL  346 (1255)
T ss_pred             hhhhh----------------------------------------------HHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence            44443                                              55566666665 77788888888888888


Q ss_pred             CCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeC
Q 041683          551 SHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNL  598 (743)
Q Consensus       551 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  598 (743)
                      ++|++. .+|+++.-++.|+.||+..|.-....|.--..-++|+.-++
T Consensus       347 ~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  347 DHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             ccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence            888877 77888888888888888888766444432222245554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=2.3e-33  Score=284.29  Aligned_cols=372  Identities=25%  Similarity=0.352  Sum_probs=295.9

Q ss_pred             CCCCCCCEEECCCCCCC-CCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCC
Q 041683           15 GNLTSLKYLDLSSNELN-STVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCK   93 (743)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~   93 (743)
                      +-++-.|-+|+++|.++ +..|+....+++++.|.|...++. .+|+ .++++.+|++|.+++|+ +. .+-..+..++.
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~-L~-~vhGELs~Lp~   79 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQ-LI-SVHGELSDLPR   79 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhh-hH-hhhhhhccchh
Confidence            34566777888888887 457888888888888888888887 7787 78888888888888543 32 34456777888


Q ss_pred             CCEEEccCCcCcc-cchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCC
Q 041683           94 LTSFSMRFTKLSQ-DISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLE  172 (743)
Q Consensus        94 L~~L~L~~n~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (743)
                      |+.++++.|++.. .+|..+-.+.     .|..|||++|++ ...|..+..-+++-+|+||+|+|..+....|.+++.|-
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~-----dLt~lDLShNqL-~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLK-----DLTILDLSHNQL-REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccc-----cceeeecchhhh-hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            8888888887653 4676666666     788888888888 45677788888888888888888865556677888888


Q ss_pred             EEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCC-CCcchhhcCCCCCCEEEccC
Q 041683          173 YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG-PRFPLWLQSQRELNDLDISS  251 (743)
Q Consensus       173 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~  251 (743)
                      .||||+|++. .+|. ....+..|++|+|++|++....-..+-.+..|++|.+++.+-+ ..+|..+..+.+|..+|+|.
T Consensus       154 fLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  154 FLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             hhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            8888888887 6666 5788888888888888876554455556667888888877543 46788899999999999999


Q ss_pred             CCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCcc
Q 041683          252 TRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIE  331 (743)
Q Consensus       252 n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~  331 (743)
                      |.+. .+|+.++. +++|+.|+|++|+|+..                       ..               ......+|+
T Consensus       232 N~Lp-~vPecly~-l~~LrrLNLS~N~iteL-----------------------~~---------------~~~~W~~lE  271 (1255)
T KOG0444|consen  232 NNLP-IVPECLYK-LRNLRRLNLSGNKITEL-----------------------NM---------------TEGEWENLE  271 (1255)
T ss_pred             cCCC-cchHHHhh-hhhhheeccCcCceeee-----------------------ec---------------cHHHHhhhh
Confidence            9996 68887765 78999999999988721                       10               011135799


Q ss_pred             EEECcCCcCcccCCccccCCCCCCEEECCCCcCc-ccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683          332 FLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT-GSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN  410 (743)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n  410 (743)
                      +|++|.|+++ ..|++++.++.|+.|.+.+|+++ .-+|..++.+.+|+.+...+|.+. ..|..++.|..|+.|.|+.|
T Consensus       272 tLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~N  349 (1255)
T KOG0444|consen  272 TLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHN  349 (1255)
T ss_pred             hhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccc
Confidence            9999999998 78999999999999999999987 357888999999999999999987 88999999999999999999


Q ss_pred             cCcccCchhHHhcccCCcEEEccCCcCcccCC
Q 041683          411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFP  442 (743)
Q Consensus       411 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  442 (743)
                      ++. .+|+.+. -++.|+.|++..|.-.-..|
T Consensus       350 rLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  350 RLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             cee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence            998 8998886 68999999999987653333

>PLN03210 Resistant to P

Probab=99.90  E-value=2e-22  Score=240.80  Aligned_cols=159  Identities=21%  Similarity=0.305  Sum_probs=79.9

Q ss_pred             chhccCCCCCCEEEccCCcCc------ccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCc
Q 041683           85 PTSFGKLCKLTSFSMRFTKLS------QDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILD  158 (743)
Q Consensus        85 ~~~l~~l~~L~~L~L~~n~l~------~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~  158 (743)
                      +.+|.+|++|+.|.+..+...      ..+|..+..++    .+|+.|++.++.+. .+|..| ...+|++|++++|.+.
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE  624 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc
Confidence            345666777777766544321      12233332222    14555555555542 233333 3455555555555554


Q ss_pred             cccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhh
Q 041683          159 GSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL  238 (743)
Q Consensus       159 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  238 (743)
                       .++..+..+++|++|+|+++.....+|.  +..+++                        |+.|++++|.....+|..+
T Consensus       625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~------------------------Le~L~L~~c~~L~~lp~si  677 (1153)
T PLN03210        625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATN------------------------LETLKLSDCSSLVELPSSI  677 (1153)
T ss_pred             -ccccccccCCCCCEEECCCCCCcCcCCc--cccCCc------------------------ccEEEecCCCCccccchhh
Confidence             3444455555555555555442224443  444444                        4444554444334555566


Q ss_pred             cCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCc
Q 041683          239 QSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQ  278 (743)
Q Consensus       239 ~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~  278 (743)
                      ..+++|+.|++++|...+.+|..+  .+++|+.|++++|.
T Consensus       678 ~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        678 QYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCS  715 (1153)
T ss_pred             hccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCC
Confidence            666666666666654334455433  34556666666554

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=3.5e-26  Score=221.07  Aligned_cols=246  Identities=20%  Similarity=0.246  Sum_probs=144.0

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCC-CccccccCcccccCCCCCCEEEcCCCCc
Q 041683            1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYS-NRLQGNVSSLGLENLTSIKRLYLSENDE   79 (743)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~l~~L~~L~Ls~~~~   79 (743)
                      |..|+|+.+.|.+|..+++||+||||+|+|+.+.|++|.++++|..|-+-+ |+|+ .+|...|+++..|+.|.+. -++
T Consensus        74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllN-an~  151 (498)
T KOG4237|consen   74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLN-ANH  151 (498)
T ss_pred             eccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcC-hhh
Confidence            346777777777788888888888888888777778887777776666655 7777 7777777777777777776 556


Q ss_pred             CCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCc------------ccchhhccCCCCC
Q 041683           80 LGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIF------------GHLTNQLRRFKRL  147 (743)
Q Consensus        80 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~------------~~~~~~l~~l~~L  147 (743)
                      +.-....+|..+++|..|.+..|.+.......+..+.     .++.+.+..|.+.            ...|..++.....
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-----~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-----AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchh-----ccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            6556667777777777777777766443222444444     5556655555421            1112222222222


Q ss_pred             CEEECcCccCc-------------------------cccc-hhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          148 NSLDLSNTILD-------------------------GSIP-FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       148 ~~L~Ls~n~l~-------------------------~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      .-..+.+.++.                         ++.| ..|..+++|+.|+|++|+++ .+.+.+|....++++|.|
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYL  305 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhc
Confidence            22222222222                         1222 23555555666666666555 444445555555566666


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI  254 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  254 (743)
                      ..|++.......|..+..|++|+|.+|+|+...|.+|..+..|.+|++-.|.+
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            55555555555555555555555555555555555555555555555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=9.2e-26  Score=218.16  Aligned_cols=412  Identities=20%  Similarity=0.212  Sum_probs=239.2

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccC-CCCccccChhhhcCCCCCCEEE
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN-NKLNGTVSEIHFVNLTKLAFFR  200 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~  200 (743)
                      .-.+++|..|+|+..++.+|+.+++|+.||||+|.|+.+.|.+|.++++|.+|-+.+ |+|+ .++...|.++..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            556777778888777777888888888888888888877777887777777765555 7776 77777788888888888


Q ss_pred             CCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccc------------cChhhhhhccc
Q 041683          201 ANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAK------------IPRGFWNSIYQ  268 (743)
Q Consensus       201 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~------------~~~~~~~~l~~  268 (743)
                      +.-|++.......|..++++..|.+.+|.+...-...|..+.+++.+.+..|.+...            .|.. ++....
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ie-tsgarc  225 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIE-TSGARC  225 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhh-ccccee
Confidence            877777777777777777777788887777655555677777777777777763110            1110 111111


Q ss_pred             CceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCC-ccccccchhhccCCCCCCCccEEECcCCcCcccCCcc
Q 041683          269 YFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNN-ALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDC  347 (743)
Q Consensus       269 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  347 (743)
                      ..-..+.+.++...-+.-.....+..         .-.++.. ...+..|.   ..+..+++|++|++++|+++++.+.+
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl---------~s~~~~~d~~d~~cP~---~cf~~L~~L~~lnlsnN~i~~i~~~a  293 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESL---------PSRLSSEDFPDSICPA---KCFKKLPNLRKLNLSNNKITRIEDGA  293 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhH---------HHhhccccCcCCcChH---HHHhhcccceEeccCCCccchhhhhh
Confidence            22222333332211111000000000         0000111 11111111   22556778888888888888877888


Q ss_pred             ccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccC-chhHHhcccC
Q 041683          348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI-PSWIGERFSI  426 (743)
Q Consensus       348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~~l~~  426 (743)
                      |.+...+++|.|..|++..+-...|.++..|+.|+|.+|+|+...|.+|..+.+|.+|++-.|++...- -.|+.+.+. 
T Consensus       294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr-  372 (498)
T KOG4237|consen  294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR-  372 (498)
T ss_pred             hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh-
Confidence            888888888888888887666677888888888888888888888888888888888888777664211 123332221 


Q ss_pred             CcEEEccCCcCcccCCccccCCCCccEEEccCCcccccc---CccccccccccccCccchhhhhhccccCCCCccccccc
Q 041683          427 LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI---PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA  503 (743)
Q Consensus       427 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (743)
                             .....+..+  -+.-..++.+++++..+...-   |+..+-...-                ..  +       
T Consensus       373 -------~~~~~~~~~--Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~----------------~c--P-------  418 (498)
T KOG4237|consen  373 -------KKSVVGNPR--CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSS----------------PC--P-------  418 (498)
T ss_pred             -------hCCCCCCCC--CCCCchhccccchhccccccccCCccccCCCCCC----------------CC--C-------
Confidence                   111111111  111224556666666554221   1111100000                00  0       


Q ss_pred             ceeeeceeeehhcccccc-cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCC
Q 041683          504 SLVMKGVLVEYNSILNLV-RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQ  582 (743)
Q Consensus       504 ~~~~~~~~~~~~~~~~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  582 (743)
                                  ..++-+ +....|+..+. .+|..+.  ..-.+|++.+|.++ .+|..  .+.+| .+|+++|+++..
T Consensus       419 ------------~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~L  479 (498)
T KOG4237|consen  419 ------------PPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSL  479 (498)
T ss_pred             ------------CCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehh
Confidence                        000001 11222333332 3332221  23456777777777 66665  55667 778888887766


Q ss_pred             CCccccCcCCCCeeeCcCC
Q 041683          583 IPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       583 ~p~~l~~l~~L~~L~ls~N  601 (743)
                      .-..|.+++.|.+|-||+|
T Consensus       480 sn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  480 SNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcccccchhhhheeEEecC
Confidence            6667777788888777776

>PLN03210 Resistant to P

Probab=99.89  E-value=1.5e-21  Score=233.17  Aligned_cols=341  Identities=18%  Similarity=0.215  Sum_probs=252.3

Q ss_pred             CCCCCCCCCCCCEEECCCCCC------CCCCchhhcCCC-CCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683           10 IPSRLGNLTSLKYLDLSSNEL------NSTVLGWLSKVN-DLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG   82 (743)
Q Consensus        10 ~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~   82 (743)
                      .+.+|.++++|+.|.+..+..      ....|+.|..++ +|+.|++.++.++ .+|. .| ...+|+.|+++ ++.+. 
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~-~s~l~-  624 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQ-GSKLE-  624 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECc-Ccccc-
Confidence            346799999999999976532      234566777765 6999999999987 7787 45 57899999999 55554 


Q ss_pred             ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccc
Q 041683           83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP  162 (743)
Q Consensus        83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  162 (743)
                      .++..+..+++|+.|+++++.....+|. +..++     +|++|++++|.....+|..+.++++|+.|++++|.....+|
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~-----~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMAT-----NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc-cccCC-----cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence            5677788999999999998765555553 45555     89999999988778889999999999999999976555677


Q ss_pred             hhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCC-------CCcc
Q 041683          163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG-------PRFP  235 (743)
Q Consensus       163 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~  235 (743)
                      ..+ ++++|++|++++|.....+|.    ...+|++|++++|.+... +.. ..+.+|+.|.+.++...       ...+
T Consensus       699 ~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~l-P~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~  771 (1153)
T PLN03210        699 TGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEF-PSN-LRLENLDELILCEMKSEKLWERVQPLTP  771 (1153)
T ss_pred             CcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccc-ccc-ccccccccccccccchhhccccccccch
Confidence            655 789999999999876555554    246889999999987643 332 25677888888765421       1122


Q ss_pred             hhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccc
Q 041683          236 LWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGS  315 (743)
Q Consensus       236 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~  315 (743)
                      ......++|+.|++++|.....+|..+ ..+++|+.|++++|...+.+|..                             
T Consensus       772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP~~-----------------------------  821 (1153)
T PLN03210        772 LMTMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLPTG-----------------------------  821 (1153)
T ss_pred             hhhhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeCCC-----------------------------
Confidence            223345789999999998777788775 45889999999987644333321                             


Q ss_pred             cchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcc
Q 041683          316 IFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTS  395 (743)
Q Consensus       316 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  395 (743)
                              . .+++|+.|++++|.....+|..   .++|++|+|++|.++ .+|..+..+++|++|++++|.--..+|..
T Consensus       822 --------~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~  888 (1153)
T PLN03210        822 --------I-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLN  888 (1153)
T ss_pred             --------C-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence                    0 2567888888887655444432   357888889888887 57778888888999998886444456666


Q ss_pred             cCCCCCCCEEeCCCCc
Q 041683          396 FKNFSSLEVLDLGENE  411 (743)
Q Consensus       396 ~~~l~~L~~L~Ls~n~  411 (743)
                      +..+++|+.+++++|.
T Consensus       889 ~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        889 ISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccCCCeeecCCCc
Confidence            7788888888888885

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=9.5e-21  Score=209.37  Aligned_cols=261  Identities=27%  Similarity=0.319  Sum_probs=168.4

Q ss_pred             ccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCC
Q 041683          220 LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD  299 (743)
Q Consensus       220 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  299 (743)
                      -..|+++++.++ .+|..+.  ++|+.|++.+|+++. +|..    +++|++|++++|+++. +|.              
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l----p~~Lk~LdLs~N~Lts-LP~--------------  259 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL----PPELRTLEVSGNQLTS-LPV--------------  259 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC----CCCCcEEEecCCccCc-ccC--------------
Confidence            345556666555 3444332  356666666666653 4431    3566666666666652 121              


Q ss_pred             CCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCc
Q 041683          300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL  379 (743)
Q Consensus       300 l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  379 (743)
                                                ..++|+.|++++|.+.. +|..   ..+|+.|++++|+++ .+|.   ..++|+
T Consensus       260 --------------------------lp~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~  305 (788)
T PRK15387        260 --------------------------LPPGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQ  305 (788)
T ss_pred             --------------------------cccccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccc
Confidence                                      02457777777777763 3322   245777777777777 3343   235677


Q ss_pred             EEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCC
Q 041683          380 SLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASN  459 (743)
Q Consensus       380 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N  459 (743)
                      .|++++|.++++ |..   ..+|+.|++++|.+. .+|..    ..+|+.|++++|++++ +|..   ..+|+.|++++|
T Consensus       306 ~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N  372 (788)
T PRK15387        306 ELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNN  372 (788)
T ss_pred             eeECCCCccccC-CCC---cccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcc
Confidence            777777777753 321   235677777777776 56631    2467788888887773 4432   346777788888


Q ss_pred             ccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhh
Q 041683          460 SLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV  539 (743)
Q Consensus       460 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  539 (743)
                      ++.+ +|..                                                 ...|+.|++++|++++ +|.. 
T Consensus       373 ~L~~-LP~l-------------------------------------------------~~~L~~LdLs~N~Lt~-LP~l-  400 (788)
T PRK15387        373 RLTS-LPAL-------------------------------------------------PSGLKELIVSGNRLTS-LPVL-  400 (788)
T ss_pred             cccc-Cccc-------------------------------------------------ccccceEEecCCcccC-CCCc-
Confidence            7763 3421                                                 1225788888888884 4433 


Q ss_pred             cccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683          540 TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       540 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  609 (743)
                        .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|..+..+++|+.|+|++|+|++.+|.
T Consensus       401 --~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        401 --PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             --ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence              357888999999988 46653   346788999999998 6788888889999999999999887765

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=5.5e-20  Score=203.36  Aligned_cols=277  Identities=23%  Similarity=0.298  Sum_probs=194.3

Q ss_pred             cccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCC
Q 041683          114 IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNL  193 (743)
Q Consensus       114 ~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  193 (743)
                      .+..|..+.-..|+++++.++ .+|..+.  ++|+.|++++|.++. +|.   .+++|++|++++|+++ .+|.    ..
T Consensus       194 r~~~Cl~~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp  261 (788)
T PRK15387        194 KMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LP  261 (788)
T ss_pred             HHHHHhcCCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cc
Confidence            333444456778888888886 4555554  478888888888884 553   2578888888888887 5554    13


Q ss_pred             CCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEe
Q 041683          194 TKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLN  273 (743)
Q Consensus       194 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  273 (743)
                      ++|+.|++++|.+.....    .+.+|+.|++++|++.. +|.   ..++|+.|++++|.+++ +|..    ...|+.|+
T Consensus       262 ~sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~  328 (788)
T PRK15387        262 PGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL----PSELCKLW  328 (788)
T ss_pred             cccceeeccCCchhhhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC----cccccccc
Confidence            578888888887764321    12467777788877763 333   23567788888877764 4431    23566677


Q ss_pred             cccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCC
Q 041683          274 ISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR  353 (743)
Q Consensus       274 l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  353 (743)
                      +++|.+++ +|.                                        ...+|+.|++++|++++ +|..   ..+
T Consensus       329 Ls~N~L~~-LP~----------------------------------------lp~~Lq~LdLS~N~Ls~-LP~l---p~~  363 (788)
T PRK15387        329 AYNNQLTS-LPT----------------------------------------LPSGLQELSVSDNQLAS-LPTL---PSE  363 (788)
T ss_pred             cccCcccc-ccc----------------------------------------cccccceEecCCCccCC-CCCC---Ccc
Confidence            77766642 221                                        02468899999999884 4432   357


Q ss_pred             CCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEcc
Q 041683          354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLR  433 (743)
Q Consensus       354 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~  433 (743)
                      |+.|++++|+++. +|..   ..+|+.|++++|.+++ +|..   .++|+.|++++|++. .+|..    ..+|+.|+++
T Consensus       364 L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls  430 (788)
T PRK15387        364 LYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVY  430 (788)
T ss_pred             cceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhc
Confidence            8888999999884 5543   3578999999999885 4432   367899999999997 67753    3468889999


Q ss_pred             CCcCcccCCccccCCCCccEEEccCCccccccCcccccccc
Q 041683          434 SNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA  474 (743)
Q Consensus       434 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  474 (743)
                      +|+++ .+|..+.++++|+.|++++|++++..+..+..+..
T Consensus       431 ~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s  470 (788)
T PRK15387        431 RNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  470 (788)
T ss_pred             cCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence            99998 67888999999999999999999887777655444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.6e-18  Score=193.43  Aligned_cols=76  Identities=29%  Similarity=0.504  Sum_probs=32.4

Q ss_pred             CCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEc
Q 041683          377 SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDV  456 (743)
Q Consensus       377 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  456 (743)
                      +|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|..+   .++|+.|++++|++. .+|..+.  .+|+.|++
T Consensus       326 sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdL  395 (754)
T PRK15370        326 GLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLPENLP--AALQIMQA  395 (754)
T ss_pred             cceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhh
Confidence            44444444444442 222221  34555555555544 344322   234555555555544 2333221  23444555


Q ss_pred             cCCccc
Q 041683          457 ASNSLS  462 (743)
Q Consensus       457 s~N~l~  462 (743)
                      ++|++.
T Consensus       396 s~N~L~  401 (754)
T PRK15370        396 SRNNLV  401 (754)
T ss_pred             ccCCcc
Confidence            555444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=2.5e-18  Score=191.76  Aligned_cols=204  Identities=26%  Similarity=0.434  Sum_probs=101.8

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG  408 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  408 (743)
                      +|++|++++|+++. +|..+.  .+|+.|++++|.+. .+|..+.  .+|+.|++++|+++. +|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECC
Confidence            45555555555542 232221  24555555555555 3333332  345555555555552 333332  355555555


Q ss_pred             CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683          409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY  488 (743)
Q Consensus       409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  488 (743)
                      +|+++ .+|..+.   ++|+.|++++|.+.. +|..+  .++|+.|++++|.+++ +|..+                   
T Consensus       292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l-------------------  344 (754)
T PRK15370        292 DNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL-------------------  344 (754)
T ss_pred             CCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh-------------------
Confidence            55555 3443321   245555666665552 33322  2455666666665552 33211                   


Q ss_pred             ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCC
Q 041683          489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS  568 (743)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  568 (743)
                                                   .+.|+.|++++|+++ .+|..+.  ++|+.|+|++|+++ .+|..+.  .+
T Consensus       345 -----------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~s  389 (754)
T PRK15370        345 -----------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AA  389 (754)
T ss_pred             -----------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HH
Confidence                                         112466666666665 3444332  46666666666666 4444433  35


Q ss_pred             ccEEECcCCcCCCCCCccc----cCcCCCCeeeCcCCccc
Q 041683          569 IESLDLSANQLSGQIPQSM----SNLSFLNHLNLSNNNLV  604 (743)
Q Consensus       569 L~~L~Ls~N~l~~~~p~~l----~~l~~L~~L~ls~N~l~  604 (743)
                      |+.|++++|+++ .+|..+    ..++.+..+++.+|+++
T Consensus       390 L~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        390 LQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            666666666666 334332    22355666666666665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.1e-19  Score=187.16  Aligned_cols=84  Identities=18%  Similarity=0.273  Sum_probs=49.3

Q ss_pred             cccEEEccCCcCcccCchhhc-----ccCCCCEEeCCCCcCcc----cCCCCCCCCCCccEEECcCCcCCCC----CCcc
Q 041683          520 LVRSIDVSKNIFSGEIPVEVT-----NLQGLQSLNLSHNLLTG----RIPDNIGVMRSIESLDLSANQLSGQ----IPQS  586 (743)
Q Consensus       520 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~  586 (743)
                      .|+.|++++|.+++.....+.     ..+.|++|++++|.++.    .+.+.+..+++|+.+++++|.++..    ....
T Consensus       222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~  301 (319)
T cd00116         222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES  301 (319)
T ss_pred             CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence            356666666666542222221     13677777777777751    2233445557777777777777744    3333


Q ss_pred             ccCc-CCCCeeeCcCCcc
Q 041683          587 MSNL-SFLNHLNLSNNNL  603 (743)
Q Consensus       587 l~~l-~~L~~L~ls~N~l  603 (743)
                      +... +.|+.+++.+|++
T Consensus       302 ~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         302 LLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HhhcCCchhhcccCCCCC
Confidence            4444 5777777777764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=3.3e-18  Score=178.15  Aligned_cols=271  Identities=22%  Similarity=0.249  Sum_probs=153.5

Q ss_pred             CCCcCC-CCCCCCCCCCCCCCEEECCCCCCCCC----CchhhcCCCCCCEEEcCCCcccc------ccCcccccCCCCCC
Q 041683            2 SGNQFQ-GQIPSRLGNLTSLKYLDLSSNELNST----VLGWLSKVNDLEFLSVYSNRLQG------NVSSLGLENLTSIK   70 (743)
Q Consensus         2 s~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~~l~~L~   70 (743)
                      .++.++ ...+..|..+++|++|+++++.++..    ++..+...++|++|+++++.+.+      .++. .+..+++|+
T Consensus         6 ~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~~L~   84 (319)
T cd00116           6 KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGCGLQ   84 (319)
T ss_pred             ccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcCcee
Confidence            345554 23334456666777888887776432    34445566777778777776651      1222 456677777


Q ss_pred             EEEcCCCCcCCcccchhccCCCC---CCEEEccCCcCcccch----hhhhcccccccCCccEEEccCCcCccc----chh
Q 041683           71 RLYLSENDELGGKIPTSFGKLCK---LTSFSMRFTKLSQDIS----EILGIFSACVANELESLRLGSSQIFGH----LTN  139 (743)
Q Consensus        71 ~L~Ls~~~~l~~~~~~~l~~l~~---L~~L~L~~n~l~~~~~----~~l~~l~~~~~~~L~~L~L~~n~~~~~----~~~  139 (743)
                      +|+++ ++.+.+..+..+..+.+   |++|++++|.++....    ..+...    .++|++|++++|.+++.    ++.
T Consensus        85 ~L~l~-~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~----~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          85 ELDLS-DNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL----PPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             EEEcc-CCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC----CCCceEEEcCCCcCCchHHHHHHH
Confidence            77777 55555445555544444   7777777777663221    222222    12677777777777632    333


Q ss_pred             hccCCCCCCEEECcCccCccc----cchhccCCCCCCEEEccCCCCccccCh---hhhcCCCCCCEEECCCCcceeecCC
Q 041683          140 QLRRFKRLNSLDLSNTILDGS----IPFSLGQISNLEYLDLSNNKLNGTVSE---IHFVNLTKLAFFRANGNSLIFKINP  212 (743)
Q Consensus       140 ~l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~  212 (743)
                      .+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+....   ..+..+++|++|++++|.+......
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            455667777777777777632    233445556777777777776522111   1345667777777777766532111


Q ss_pred             CCC-----CCccccEEEcCCCcCCC----CcchhhcCCCCCCEEEccCCCCccccChhh---hhhc-ccCceEecccCc
Q 041683          213 NWV-----PPFQLTVLELRSCHLGP----RFPLWLQSQRELNDLDISSTRISAKIPRGF---WNSI-YQYFYLNISGNQ  278 (743)
Q Consensus       213 ~~~-----~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~---~~~l-~~L~~L~l~~n~  278 (743)
                      .+.     ....|+.|++++|.++.    .+...+..+++|+.+++++|.++..-...+   .... +.++.+++.+|.
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            111     23567777777776652    123344455667777777777764321111   1112 456666665553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=2e-18  Score=148.23  Aligned_cols=129  Identities=37%  Similarity=0.504  Sum_probs=78.8

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      +..++.|.+|+|+++ .+|..+..+.+|+.|++++|++. ..|..++.+++|+.|++.-|++. +.|..|+.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            456677777777777 44556677777777777777776 56666777777777777777765 6666777777777777


Q ss_pred             CCCCcCcc-cCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCc
Q 041683          407 LGENELVG-SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS  460 (743)
Q Consensus       407 Ls~n~i~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  460 (743)
                      +.+|.+.. .+|..+| .++.|+.|++++|.+. .+|...+++++|+.|.+.+|.
T Consensus       109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            77766642 3444444 3444555555555544 344444444444444444443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.66  E-value=1.4e-18  Score=149.17  Aligned_cols=84  Identities=30%  Similarity=0.570  Sum_probs=53.4

Q ss_pred             CCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEE
Q 041683          375 LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQIL  454 (743)
Q Consensus       375 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  454 (743)
                      +..++.|.+++|+++ ..|..++.+.+|+.|++++|++. .+|..+. .++.|+.|+++-|++. ..|..|+.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            445555666666665 33445566666666666666665 5666554 4666666666666666 666677777777777


Q ss_pred             EccCCccc
Q 041683          455 DVASNSLS  462 (743)
Q Consensus       455 ~Ls~N~l~  462 (743)
                      |+.+|++.
T Consensus       108 dltynnl~  115 (264)
T KOG0617|consen  108 DLTYNNLN  115 (264)
T ss_pred             hccccccc
Confidence            77777665

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.3e-14  Score=161.81  Aligned_cols=116  Identities=37%  Similarity=0.663  Sum_probs=103.4

Q ss_pred             cccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCc
Q 041683          520 LVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS  599 (743)
Q Consensus       520 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  599 (743)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCc--ccCCCCCccccCC-CCCCCCC-CCCC
Q 041683          600 NNNLVGKIPSST--QLQSFGASSFAGN-DLCGDPL-SNCT  635 (743)
Q Consensus       600 ~N~l~~~~p~~~--~~~~l~~~~~~~n-~l~~~~~-~~c~  635 (743)
                      +|+++|.+|...  .+..+..+++.+| .+|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  1233456778999 8998763 3553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.32  E-value=5.4e-14  Score=143.48  Aligned_cols=195  Identities=28%  Similarity=0.458  Sum_probs=155.6

Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEE
Q 041683          351 WLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKIL  430 (743)
Q Consensus       351 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L  430 (743)
                      +.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|+.+||+.|++. .+|..++ .++ |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cCc-ceeE
Confidence            344567889999998 78888888889999999999998 67788999999999999999998 8888876 455 9999


Q ss_pred             EccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeece
Q 041683          431 NLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGV  510 (743)
Q Consensus       431 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (743)
                      .+++|+++ .+|..++.++.|..||.+.|.+. .+|..+..+.+|                                   
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-----------------------------------  191 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-----------------------------------  191 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence            99999998 77888888889999999999987 566666665553                                   


Q ss_pred             eeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCcccc--
Q 041683          511 LVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMS--  588 (743)
Q Consensus       511 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--  588 (743)
                                 +.|.+..|.+. ..|+++..|+ |..||+|.|+++ .+|-.|..|+.|++|-|.+|.+. ..|..+.  
T Consensus       192 -----------r~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k  256 (722)
T KOG0532|consen  192 -----------RDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK  256 (722)
T ss_pred             -----------HHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence                       77788888887 4566666444 888999999988 88888999999999999999988 4554432  


Q ss_pred             -CcCCCCeeeCcCCc
Q 041683          589 -NLSFLNHLNLSNNN  602 (743)
Q Consensus       589 -~l~~L~~L~ls~N~  602 (743)
                       ...--++|+...++
T Consensus       257 GkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  257 GKVHIFKYLSTQACQ  271 (722)
T ss_pred             cceeeeeeecchhcc
Confidence             23445677777774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.24  E-value=1.5e-13  Score=140.28  Aligned_cols=193  Identities=32%  Similarity=0.466  Sum_probs=140.6

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG  408 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  408 (743)
                      .-...|++.|++. .+|..++.+..|+.+.+.+|.+. .+|.++..+..|++++++.|+++ ..|..++.++ |+.|-++
T Consensus        76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            3456677777777 56767777777777888888777 67777777888888888888877 4555666554 7778888


Q ss_pred             CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683          409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY  488 (743)
Q Consensus       409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  488 (743)
                      +|+++ .+|..+. ..+.|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..++               
T Consensus       152 NNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp---------------  212 (722)
T KOG0532|consen  152 NNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP---------------  212 (722)
T ss_pred             cCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc---------------
Confidence            88886 7777776 6777888888888877 56677788888888888888876 4454444333               


Q ss_pred             ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCC---C
Q 041683          489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIG---V  565 (743)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~  565 (743)
                                                      |..||+|+|+++ .+|.+|.+|+.|++|-|.+|.+. ..|..+.   .
T Consensus       213 --------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGk  258 (722)
T KOG0532|consen  213 --------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGK  258 (722)
T ss_pred             --------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccc
Confidence                                            578888888888 78888888888888888888887 5555432   2


Q ss_pred             CCCccEEECcCCc
Q 041683          566 MRSIESLDLSANQ  578 (743)
Q Consensus       566 l~~L~~L~Ls~N~  578 (743)
                      ..--++|+..-++
T Consensus       259 VHIFKyL~~qA~q  271 (722)
T KOG0532|consen  259 VHIFKYLSTQACQ  271 (722)
T ss_pred             eeeeeeecchhcc
Confidence            2334566666663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1.6e-11  Score=131.60  Aligned_cols=85  Identities=36%  Similarity=0.580  Sum_probs=49.4

Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                      +++++++|.+. ..+..+..+..+..+.+++|++. ..+..++.+++++.|++++|.++...+  +..+.+++.|++++|
T Consensus       212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n  287 (394)
T COG4886         212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN  287 (394)
T ss_pred             hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCc
Confidence            44444444322 33444555666666666666665 335556666667777777777763333  566667777777777


Q ss_pred             cccccCCCC
Q 041683          602 NLVGKIPSS  610 (743)
Q Consensus       602 ~l~~~~p~~  610 (743)
                      .++..+|..
T Consensus       288 ~~~~~~~~~  296 (394)
T COG4886         288 SLSNALPLI  296 (394)
T ss_pred             cccccchhh
Confidence            666665543

>PLN03150 hypothetical protein; Provisional

Probab=99.22  E-value=3.1e-11  Score=135.00  Aligned_cols=114  Identities=32%  Similarity=0.568  Sum_probs=102.1

Q ss_pred             CccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCC
Q 041683          450 FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKN  529 (743)
Q Consensus       450 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  529 (743)
                      .++.|+|++|.+.|.+|..+..++.|                                              +.|+|++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L----------------------------------------------~~L~Ls~N  452 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHL----------------------------------------------QSINLSGN  452 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCC----------------------------------------------CEEECCCC
Confidence            37889999999999999888776664                                              89999999


Q ss_pred             cCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCcccccCC
Q 041683          530 IFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGKIP  608 (743)
Q Consensus       530 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p  608 (743)
                      .++|.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|++++.+|..+..+ .++..+++++|+..|..|
T Consensus       453 ~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        453 SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999999999999999999999999999999999999999999999999999988764 567899999999877665


Q ss_pred             C
Q 041683          609 S  609 (743)
Q Consensus       609 ~  609 (743)
                      .
T Consensus       533 ~  533 (623)
T PLN03150        533 G  533 (623)
T ss_pred             C
Confidence            4

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.17  E-value=7.3e-12  Score=117.96  Aligned_cols=221  Identities=20%  Similarity=0.242  Sum_probs=125.7

Q ss_pred             CCCCccEEECcCCc--------CcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccC
Q 041683          326 FSNNIEFLKLSKNN--------FSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFK  397 (743)
Q Consensus       326 ~~~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  397 (743)
                      ++..|+.|..+.-.        +....|-.+..+.+|+.+.+|++.-..+ .+....-|.|+++.+.+..+... | .+-
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~-~-~l~  256 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDV-P-SLL  256 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccccc-c-ccc
Confidence            35567777766531        1122233344556777777777654422 12222235677777766554421 1 111


Q ss_pred             CCCCCCEEeCC-----CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccccc
Q 041683          398 NFSSLEVLDLG-----ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNL  472 (743)
Q Consensus       398 ~l~~L~~L~Ls-----~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  472 (743)
                      ....+....-+     .-.....+|.|     +.|++++|++|.|+ .+.++..-.|.++.|++|+|.+..     ..++
T Consensus       257 pe~~~~D~~~~E~~t~~G~~~~~~dTW-----q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nL  325 (490)
T KOG1259|consen  257 PETILADPSGSEPSTSNGSALVSADTW-----QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNL  325 (490)
T ss_pred             chhhhcCccCCCCCccCCceEEecchH-----hhhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhh
Confidence            11111111111     11111123332     34777778887777 455566667777778888777752     1111


Q ss_pred             ccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCC
Q 041683          473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSH  552 (743)
Q Consensus       473 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  552 (743)
                      .                                           .+++|+.||||+|.++ .+...-..+-+.++|.|++
T Consensus       326 a-------------------------------------------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  326 A-------------------------------------------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             h-------------------------------------------hcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence            1                                           1334577777777776 3333445567788888888


Q ss_pred             CcCcccCCCCCCCCCCccEEECcCCcCCCCCC-ccccCcCCCCeeeCcCCccccc
Q 041683          553 NLLTGRIPDNIGVMRSIESLDLSANQLSGQIP-QSMSNLSFLNHLNLSNNNLVGK  606 (743)
Q Consensus       553 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~  606 (743)
                      |.|. .. ..++.+-+|..||+++|+|..... ..+++++.|+++.|.+||+.+.
T Consensus       362 N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  362 NKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            8875 22 346777788888888888864332 4677888888888888888754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=8.2e-12  Score=123.96  Aligned_cols=86  Identities=27%  Similarity=0.329  Sum_probs=46.9

Q ss_pred             ccEEEccCCcCcccC-chhhcccCCCCEEeCCCCcCccc-CCCC-----CCCCCCccEEECcCCcCCCCC-CccccCcCC
Q 041683          521 VRSIDVSKNIFSGEI-PVEVTNLQGLQSLNLSHNLLTGR-IPDN-----IGVMRSIESLDLSANQLSGQI-PQSMSNLSF  592 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~  592 (743)
                      |++|||++|.+.... -...+.++.|..|+++.+.+... .|+.     ...+++|+.|+++.|+|...- -..+..+.+
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n  327 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN  327 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence            455555555554221 12245566667777777766532 2222     234567777777777775211 123445566


Q ss_pred             CCeeeCcCCccccc
Q 041683          593 LNHLNLSNNNLVGK  606 (743)
Q Consensus       593 L~~L~ls~N~l~~~  606 (743)
                      |+.|.+..|+++.+
T Consensus       328 lk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  328 LKHLRITLNYLNKE  341 (505)
T ss_pred             hhhhhccccccccc
Confidence            67777777777543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=1.8e-10  Score=123.50  Aligned_cols=201  Identities=31%  Similarity=0.530  Sum_probs=121.9

Q ss_pred             EEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC-CCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683          332 FLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLS-SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN  410 (743)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n  410 (743)
                      .++++.+.+... .......+.++.|++.+|.++ .++....... +|+.|++++|.+.. +|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            355555554311 122333455666666666666 3343344442 66666666666663 3344666677777777777


Q ss_pred             cCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhcc
Q 041683          411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSS  490 (743)
Q Consensus       411 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~  490 (743)
                      ++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|++. ..+..+.++..                
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~----------------  233 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN----------------  233 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence            776 5555442 3666777777777776 44444444555777777777532 23333333333                


Q ss_pred             ccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCcc
Q 041683          491 LRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIE  570 (743)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  570 (743)
                                                    +..+.+++|++. ..+..++.++++++|++++|.++ .++. ++.+.+++
T Consensus       234 ------------------------------l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~  280 (394)
T COG4886         234 ------------------------------LSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLR  280 (394)
T ss_pred             ------------------------------ccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccC
Confidence                                          345556666665 23566777888999999999888 4444 78888999


Q ss_pred             EEECcCCcCCCCCCcccc
Q 041683          571 SLDLSANQLSGQIPQSMS  588 (743)
Q Consensus       571 ~L~Ls~N~l~~~~p~~l~  588 (743)
                      .|++++|.++...|....
T Consensus       281 ~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         281 ELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             EEeccCccccccchhhhc
Confidence            999999988876665443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=4.1e-12  Score=122.76  Aligned_cols=136  Identities=18%  Similarity=0.291  Sum_probs=86.4

Q ss_pred             CCCccEEECcCCcCccc----CCccccCCCCCCEEECCCCcCcc----cCCccccCCCCCcEEEccCcccccc----CCc
Q 041683          327 SNNIEFLKLSKNNFSGD----IPDCWMNWLRLRALNLGHNNFTG----SLPMSIGTLSSLLSLNLRNNILSGI----IPT  394 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~----~~~  394 (743)
                      .+.|+.+....|++...    +...|...+.|+.+.++.|.|..    ....+|..+++|+.|+|++|.++..    +..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            35577777777766522    12345556677777777776652    1223466777788888877776632    234


Q ss_pred             ccCCCCCCCEEeCCCCcCcccCchhH----HhcccCCcEEEccCCcCccc----CCccccCCCCccEEEccCCccc
Q 041683          395 SFKNFSSLEVLDLGENELVGSIPSWI----GERFSILKILNLRSNKFHGD----FPIQLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       395 ~~~~l~~L~~L~Ls~n~i~~~~~~~~----~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  462 (743)
                      .+..+++|++|++++|.+.......+    ....++|+.|.+.+|.++..    +.......+.|..|+|++|++.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            56667778888888887764433332    23456788888888887622    2233455778888888888883

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.6e-11  Score=121.90  Aligned_cols=231  Identities=22%  Similarity=0.204  Sum_probs=158.6

Q ss_pred             EEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC-ccccCCCCCCEEECCCCcCcccC--CccccCCCCCcEE
Q 041683          305 FDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP-DCWMNWLRLRALNLGHNNFTGSL--PMSIGTLSSLLSL  381 (743)
Q Consensus       305 l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L  381 (743)
                      +.+++-.+.....+.+...-+++.+|++..|.++....... .....|++++.||||+|-+....  ......+++|+.|
T Consensus        98 ~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~L  177 (505)
T KOG3207|consen   98 LSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENL  177 (505)
T ss_pred             hhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhc
Confidence            33444444444455555555667889999999998762221 36678999999999999887432  2334578999999


Q ss_pred             EccCccccccCCc-ccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCc
Q 041683          382 NLRNNILSGIIPT-SFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS  460 (743)
Q Consensus       382 ~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  460 (743)
                      +++.|++...... .-..+++|+.|.++.|.++..--.++...+|+|+.|+|.+|...........-++.|+.|||++|+
T Consensus       178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            9999988632211 123568899999999999744444555678999999999996443444455667889999999998


Q ss_pred             cccccC-ccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccC-chh
Q 041683          461 LSGTIP-RCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEI-PVE  538 (743)
Q Consensus       461 l~~~~p-~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~  538 (743)
                      +...-. ...+                                              .++.|+.|+++.+.+...- |+.
T Consensus       258 li~~~~~~~~~----------------------------------------------~l~~L~~Lnls~tgi~si~~~d~  291 (505)
T KOG3207|consen  258 LIDFDQGYKVG----------------------------------------------TLPGLNQLNLSSTGIASIAEPDV  291 (505)
T ss_pred             ccccccccccc----------------------------------------------cccchhhhhccccCcchhcCCCc
Confidence            863211 1112                                              2444677788888776432 222


Q ss_pred             -----hcccCCCCEEeCCCCcCcccCC--CCCCCCCCccEEECcCCcCCCC
Q 041683          539 -----VTNLQGLQSLNLSHNLLTGRIP--DNIGVMRSIESLDLSANQLSGQ  582 (743)
Q Consensus       539 -----~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~  582 (743)
                           ...+++|+.|+++.|++. ..+  ..+..+++|+.|....|.++..
T Consensus       292 ~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  292 ESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             cchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence                 356788999999999986 222  3355667888888889988744

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=4e-11  Score=113.06  Aligned_cols=224  Identities=16%  Similarity=0.135  Sum_probs=122.8

Q ss_pred             CCCCCCEEECCCCC--------CCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchh
Q 041683           16 NLTSLKYLDLSSNE--------LNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTS   87 (743)
Q Consensus        16 ~l~~L~~L~Ls~n~--------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~   87 (743)
                      -+..|++|-.+...        +....|-.+..+++|+.+.+|.|.-. .|-. ....-|.|+++... +..+..  ..+
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~-~i~~-~~~~kptl~t~~v~-~s~~~~--~~~  254 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTE-NIVD-IELLKPTLQTICVH-NTTIQD--VPS  254 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchh-heec-eeecCchhheeeee-cccccc--ccc
Confidence            34567777666432        12223334456677777777777654 3332 22233567777776 433321  112


Q ss_pred             ccCCCCCCEEEccCCc-CcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhcc
Q 041683           88 FGKLCKLTSFSMRFTK-LSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLG  166 (743)
Q Consensus        88 l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  166 (743)
                      +-.++.+.....+.-. ..+.....+...     ..|+++||++|.| ..+.++..-.|.++.|++|+|.|...  ..+.
T Consensus       255 l~pe~~~~D~~~~E~~t~~G~~~~~~dTW-----q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa  326 (490)
T KOG1259|consen  255 LLPETILADPSGSEPSTSNGSALVSADTW-----QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLA  326 (490)
T ss_pred             ccchhhhcCccCCCCCccCCceEEecchH-----hhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhh
Confidence            2222222221111111 111111111111     2567777777766 34455566667777777777777633  2366


Q ss_pred             CCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCC-cchhhcCCCCCC
Q 041683          167 QISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPR-FPLWLQSQRELN  245 (743)
Q Consensus       167 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~  245 (743)
                      .+++|+.|||++|.++ .+.. +-..+.+.+.|.+++|.+...  ..+..+.+|..|++++|+|... -...++++|.|+
T Consensus       327 ~L~~L~~LDLS~N~Ls-~~~G-wh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE  402 (490)
T KOG1259|consen  327 ELPQLQLLDLSGNLLA-ECVG-WHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE  402 (490)
T ss_pred             hcccceEeecccchhH-hhhh-hHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence            6677777777777765 4433 344566677777777766432  3345556677777777776532 234577888888


Q ss_pred             EEEccCCCCcc
Q 041683          246 DLDISSTRISA  256 (743)
Q Consensus       246 ~L~l~~n~i~~  256 (743)
                      .+.+.+|.+..
T Consensus       403 ~l~L~~NPl~~  413 (490)
T KOG1259|consen  403 TLRLTGNPLAG  413 (490)
T ss_pred             HHhhcCCCccc
Confidence            88888888864

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.3e-10  Score=105.81  Aligned_cols=105  Identities=26%  Similarity=0.279  Sum_probs=23.1

Q ss_pred             CccEEECcCCcCcccCCcccc-CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWM-NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  407 (743)
                      .+++|+|++|.|..+  +.+. .+.+|+.|++++|.|+..  +.+..++.|++|++++|.|+.+.+.....+++|++|++
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            455556666555532  1232 344555555555555532  23444555555555555555332211123455555555


Q ss_pred             CCCcCcccCch-hHHhcccCCcEEEccCCcCc
Q 041683          408 GENELVGSIPS-WIGERFSILKILNLRSNKFH  438 (743)
Q Consensus       408 s~n~i~~~~~~-~~~~~l~~L~~L~L~~n~l~  438 (743)
                      ++|+|.. +.. .....+++|+.|++.+|++.
T Consensus        96 ~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   96 SNNKISD-LNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence            5555541 111 11123445555555555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.02  E-value=1e-10  Score=113.20  Aligned_cols=191  Identities=15%  Similarity=0.150  Sum_probs=116.7

Q ss_pred             ccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccch-------------hhccCCCCCCEEECcC
Q 041683           88 FGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLT-------------NQLRRFKRLNSLDLSN  154 (743)
Q Consensus        88 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~-------------~~l~~l~~L~~L~Ls~  154 (743)
                      +..+++|++++||.|-+....+..+..+-.. +..|++|.|.+|.+.-.-.             .....-++|+++...+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s-~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSS-CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHh-ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            4455566666666666554443333322111 1256666666666521111             1123446788888888


Q ss_pred             ccCccc----cchhccCCCCCCEEEccCCCCcc--c-cChhhhcCCCCCCEEECCCCcceee----cCCCCCCCccccEE
Q 041683          155 TILDGS----IPFSLGQISNLEYLDLSNNKLNG--T-VSEIHFVNLTKLAFFRANGNSLIFK----INPNWVPPFQLTVL  223 (743)
Q Consensus       155 n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L  223 (743)
                      |++...    +...|...+.|+.+.+++|.|..  . .-...|..+++|+.||+..|.++..    ....+..+++|+.|
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            877532    23456667788888888887751  1 2223577888888888888877643    23345566688888


Q ss_pred             EcCCCcCCCCcchhh-----cCCCCCCEEEccCCCCccccChhhh---hhcccCceEecccCcc
Q 041683          224 ELRSCHLGPRFPLWL-----QSQRELNDLDISSTRISAKIPRGFW---NSIYQYFYLNISGNQI  279 (743)
Q Consensus       224 ~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l  279 (743)
                      ++++|.+.......+     ...+.|+.|.+.+|.|+..-...+.   ...+.|..|++++|.+
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            888888876544443     2468899999999988643222111   2256788888888887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=9.7e-10  Score=100.15  Aligned_cols=111  Identities=29%  Similarity=0.405  Sum_probs=44.7

Q ss_pred             ccCCCCCCEEECCCCcCcccCCcccc-CCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccC
Q 041683          348 WMNWLRLRALNLGHNNFTGSLPMSIG-TLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSI  426 (743)
Q Consensus       348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~  426 (743)
                      +.+..++++|+|++|.|+.+  +.++ .+.+|+.|++++|.|+.+  +.+..++.|++|++++|.|+ .++..+...+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence            34556799999999999843  3455 578999999999999965  45888999999999999998 676555546899


Q ss_pred             CcEEEccCCcCcccCC-ccccCCCCccEEEccCCcccc
Q 041683          427 LKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSG  463 (743)
Q Consensus       427 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~  463 (743)
                      |+.|++++|+|..... ..+..+++|+.|++.+|++..
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            9999999999974322 357789999999999999873

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.90  E-value=8.5e-10  Score=82.46  Aligned_cols=59  Identities=47%  Similarity=0.635  Sum_probs=29.3

Q ss_pred             CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCc
Q 041683          544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNN  602 (743)
Q Consensus       544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~  602 (743)
                      +|++|++++|+++...++.|..+++|++|++++|+++...|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555553333444555555555555555554444445555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.6e-09  Score=80.90  Aligned_cols=61  Identities=36%  Similarity=0.483  Sum_probs=57.2

Q ss_pred             ccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcC
Q 041683          519 NLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQL  579 (743)
Q Consensus       519 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  579 (743)
                      ++|++|++++|+++...+..|.++++|++|++++|+++...|+.|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4589999999999988888999999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.86  E-value=2.6e-10  Score=122.21  Aligned_cols=128  Identities=25%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      +..++.+.+..|.+.. +-..+..+++|+.|++.+|.|..+ ...+..+++|++|++++|.|+.+.  .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            3456666666666653 223455666777777777777633 222555677777777777776552  355556677777


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccc
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~  462 (743)
                      +++|.|. .+...  ..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       147 l~~N~i~-~~~~~--~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLIS-DISGL--ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcch-hccCC--ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            7777765 33322  125667777777777664333 1 355666666667766664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.81  E-value=7.4e-09  Score=118.40  Aligned_cols=132  Identities=24%  Similarity=0.303  Sum_probs=97.5

Q ss_pred             CCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCc--cccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCC
Q 041683           15 GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR--LQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLC   92 (743)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~   92 (743)
                      .+....|...+.+|.+..+. .. ..++.|++|-+..|.  +. .++...|..++.|+.|||++| .--+.+|..++.+.
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~-~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~-~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIA-GS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGN-SSLSKLPSSIGELV  595 (889)
T ss_pred             cchhheeEEEEeccchhhcc-CC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCC-CccCcCChHHhhhh
Confidence            34456788888888764432 22 234578889888886  44 666656888999999999954 44467899999999


Q ss_pred             CCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCcc
Q 041683           93 KLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTI  156 (743)
Q Consensus        93 ~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~  156 (743)
                      +||+|+++++.+. .+|..++.+.     .|.+|++..+.....+|.....+++|++|.+....
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk-----~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLK-----KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHH-----hhheeccccccccccccchhhhcccccEEEeeccc
Confidence            9999999888877 4788888887     88888888777655566666678888888886654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.76  E-value=2.1e-09  Score=115.22  Aligned_cols=225  Identities=26%  Similarity=0.280  Sum_probs=159.6

Q ss_pred             CCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683          325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV  404 (743)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  404 (743)
                      ..+.+++.|++.+|+|..+. ..+..+++|++|++++|.|+.+  ..+..++.|+.|++++|.|+.+  ..+..++.|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence            34678999999999998543 3377899999999999999965  3466778899999999999865  45777999999


Q ss_pred             EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchh
Q 041683          405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQA  484 (743)
Q Consensus       405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  484 (743)
                      +++++|.+. .+.......+.+++.+.+.+|.+...  ..+..+..+..+++..|.+...-+     +..          
T Consensus       167 l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~-----l~~----------  228 (414)
T KOG0531|consen  167 LDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG-----LNE----------  228 (414)
T ss_pred             ccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC-----ccc----------
Confidence            999999998 45441023688999999999999843  234555666666888888763221     111          


Q ss_pred             hhhhccccCCCCcccccccceeeeceeeehhcccc--cccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683          485 VILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILN--LVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN  562 (743)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  562 (743)
                                                       ..  .|+.+++++|++. ..+..+..+..+..|++++|++...  ..
T Consensus       229 ---------------------------------~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~  272 (414)
T KOG0531|consen  229 ---------------------------------LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EG  272 (414)
T ss_pred             ---------------------------------chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--cc
Confidence                                             01  2577888888887 3335566677888888888887632  23


Q ss_pred             CCCCCCccEEECcCCcCCCC---CCcc-ccCcCCCCeeeCcCCcccccCC
Q 041683          563 IGVMRSIESLDLSANQLSGQ---IPQS-MSNLSFLNHLNLSNNNLVGKIP  608 (743)
Q Consensus       563 ~~~l~~L~~L~Ls~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~~~~p  608 (743)
                      +.....+..+....|.+...   .... ......++.+++.+|+.....+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  273 LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            45566777777777777522   1111 4456777778888887766544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.63  E-value=2.7e-08  Score=113.88  Aligned_cols=131  Identities=23%  Similarity=0.265  Sum_probs=94.0

Q ss_pred             CCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCc-CCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccc
Q 041683           41 VNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDE-LGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV  119 (743)
Q Consensus        41 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~  119 (743)
                      ....+...+-+|.+. .++.  -..++.|++|-+..|.. +.......|..++.|+.|||++|.-.+.+|..++.+-   
T Consensus       522 ~~~~rr~s~~~~~~~-~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li---  595 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIE-HIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV---  595 (889)
T ss_pred             hhheeEEEEeccchh-hccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh---
Confidence            356777777777776 4444  23445788888874432 4444445578888888888888776667888888877   


Q ss_pred             cCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC
Q 041683          120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK  180 (743)
Q Consensus       120 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  180 (743)
                        +|++|++++..+. .+|..+.++++|.+|++..+.-...+|.....+++|++|.+....
T Consensus       596 --~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  596 --HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             --hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence              8888888888874 677778888888888888776655556666668888888876654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.4e-09  Score=102.94  Aligned_cols=180  Identities=22%  Similarity=0.292  Sum_probs=123.4

Q ss_pred             CCCEEECCCCCCCCC-CchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCccc-chhccCCCCCCE
Q 041683           19 SLKYLDLSSNELNST-VLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI-PTSFGKLCKLTS   96 (743)
Q Consensus        19 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~l~~l~~L~~   96 (743)
                      .|++||||...|+.. .-..+..|.+|+.|.|.++++.+.+-. .++.-.+|+.|+|+.++.++... .--+.+|+.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            588999998888643 344567889999999999999877766 78888999999999776665432 224688999999


Q ss_pred             EEccCCcCcccchhhhhcccccccCCccEEEccCCcC---cccchhhccCCCCCCEEECcCcc-CccccchhccCCCCCC
Q 041683           97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI---FGHLTNQLRRFKRLNSLDLSNTI-LDGSIPFSLGQISNLE  172 (743)
Q Consensus        97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~---~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~  172 (743)
                      |++++|.+..+...   ..-....++|..|+++++.-   ...+..--.++++|.+||||+|. ++......|.+++.|+
T Consensus       265 LNlsWc~l~~~~Vt---v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVT---VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             cCchHhhccchhhh---HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            99999987654322   22222334788899887642   22223334578899999998764 4433344667788889


Q ss_pred             EEEccCCCCccccCh--hhhcCCCCCCEEECCCC
Q 041683          173 YLDLSNNKLNGTVSE--IHFVNLTKLAFFRANGN  204 (743)
Q Consensus       173 ~L~L~~n~l~~~~~~--~~~~~l~~L~~L~l~~n  204 (743)
                      +|.++.|..  .+|.  ..+...+.|.+|++.++
T Consensus       342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            998888873  3333  12445556666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.58  E-value=2.5e-09  Score=112.82  Aligned_cols=107  Identities=30%  Similarity=0.370  Sum_probs=67.0

Q ss_pred             cccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC-CCCCCCccEEECcCCcCCCCCCccccCcCCCCee
Q 041683          518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN-IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHL  596 (743)
Q Consensus       518 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  596 (743)
                      ++.++.|||++|+++...  .+..++.|++|||++|.+. .+|.. ...+ .|+.|.+++|.++..  ..+++|.+|+.|
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence            344577777777776432  5677777777777777777 44432 2222 377777777777633  346677777777


Q ss_pred             eCcCCcccccCC--CCcccCCCCCccccCCCCCCCC
Q 041683          597 NLSNNNLVGKIP--SSTQLQSFGASSFAGNDLCGDP  630 (743)
Q Consensus       597 ~ls~N~l~~~~p--~~~~~~~l~~~~~~~n~l~~~~  630 (743)
                      |+++|-+.+.-.  ..+.+..+..+.++||++|-.|
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            777777665321  1133445556677777776544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.56  E-value=1.7e-09  Score=114.06  Aligned_cols=181  Identities=29%  Similarity=0.293  Sum_probs=121.3

Q ss_pred             CccccCCCCCcEEEccCccccccCCcccCCC-CCCCEEeCCCCcCc----------ccCchhHHhcccCCcEEEccCCcC
Q 041683          369 PMSIGTLSSLLSLNLRNNILSGIIPTSFKNF-SSLEVLDLGENELV----------GSIPSWIGERFSILKILNLRSNKF  437 (743)
Q Consensus       369 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~----------~~~~~~~~~~l~~L~~L~L~~n~l  437 (743)
                      |-.+..+.+|+.|.+++|.+...  ..+..+ .+|++|.-. |.+.          |.+.....  ...|...+.++|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence            44566778999999999988742  122222 234444322 2111          11111110  22577888899988


Q ss_pred             cccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcc
Q 041683          438 HGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI  517 (743)
Q Consensus       438 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (743)
                      . .....+.-++.|+.|||++|++...-  .+..                                              
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~----------------------------------------------  207 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKVD--NLRR----------------------------------------------  207 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhhH--HHHh----------------------------------------------
Confidence            8 56667888899999999999887211  2222                                              


Q ss_pred             cccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCC-ccccCcCCCCee
Q 041683          518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP-QSMSNLSFLNHL  596 (743)
Q Consensus       518 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L  596 (743)
                      ++.|+.|||++|.+....--...++. |+.|+|++|.++ .+ ..+.++.+|+.||+++|-|++.-- .-+..|..|+.|
T Consensus       208 l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L  284 (1096)
T KOG1859|consen  208 LPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVL  284 (1096)
T ss_pred             cccccccccccchhccccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHH
Confidence            44569999999999843322334444 999999999998 33 347889999999999999875422 234567889999


Q ss_pred             eCcCCccccc
Q 041683          597 NLSNNNLVGK  606 (743)
Q Consensus       597 ~ls~N~l~~~  606 (743)
                      .|.+||+.+.
T Consensus       285 ~LeGNPl~c~  294 (1096)
T KOG1859|consen  285 WLEGNPLCCA  294 (1096)
T ss_pred             hhcCCccccC
Confidence            9999999654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.31  E-value=4.7e-08  Score=81.83  Aligned_cols=87  Identities=24%  Similarity=0.352  Sum_probs=61.4

Q ss_pred             ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      ++.|++++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++-.||..+|.+. .+|-.+-.-+..-..++.+
T Consensus        79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn  155 (177)
T KOG4579|consen   79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN  155 (177)
T ss_pred             hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence            466777777776 66777888888888888888887 66777777888888888888887 4443333334444556677


Q ss_pred             CcccccCCCC
Q 041683          601 NNLVGKIPSS  610 (743)
Q Consensus       601 N~l~~~~p~~  610 (743)
                      +++.+..|..
T Consensus       156 epl~~~~~~k  165 (177)
T KOG4579|consen  156 EPLGDETKKK  165 (177)
T ss_pred             CcccccCccc
Confidence            7777776654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.4e-08  Score=94.69  Aligned_cols=85  Identities=24%  Similarity=0.171  Sum_probs=40.7

Q ss_pred             CCEEECCCCcCcc-cCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCc-CcccCchhHHhcccCCcEEE
Q 041683          354 LRALNLGHNNFTG-SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE-LVGSIPSWIGERFSILKILN  431 (743)
Q Consensus       354 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~  431 (743)
                      |++||||+-.|+. ..-..++.|.+|+.|.+.++++.+-+...++...+|+.|+++.+. ++..--..++..++.|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5555555544441 111223445555555555555554444455555555555555543 22111223334455555555


Q ss_pred             ccCCcCc
Q 041683          432 LRSNKFH  438 (743)
Q Consensus       432 L~~n~l~  438 (743)
                      ++.|.+.
T Consensus       267 lsWc~l~  273 (419)
T KOG2120|consen  267 LSWCFLF  273 (419)
T ss_pred             chHhhcc
Confidence            5555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=1e-07  Score=79.82  Aligned_cols=63  Identities=25%  Similarity=0.385  Sum_probs=36.4

Q ss_pred             CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc
Q 041683          398 NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       398 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  462 (743)
                      ....|+..+|++|.+. .+|..+...++.++.|++++|+++ .+|..+..++.|+.|+++.|++.
T Consensus        51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            3344555566666665 555555545555666666666665 45555666666666666666554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=2.7e-07  Score=87.66  Aligned_cols=82  Identities=23%  Similarity=0.228  Sum_probs=46.0

Q ss_pred             cccccEEEccCCcCcccC-chhhcccCCCCEEeCCCCcCcc-cCCCCCCCCCCccEEECcCCcCCCCCCc------cccC
Q 041683          518 LNLVRSIDVSKNIFSGEI-PVEVTNLQGLQSLNLSHNLLTG-RIPDNIGVMRSIESLDLSANQLSGQIPQ------SMSN  589 (743)
Q Consensus       518 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~------~l~~  589 (743)
                      ++++..+-+..|.+.... -..+..++.+-.|+|+.|+|.. ..-+++..+++|..|.+++|.+...+..      .++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            455566666666554322 2234556666677777777753 1124466677777777777777533221      1345


Q ss_pred             cCCCCeeeCc
Q 041683          590 LSFLNHLNLS  599 (743)
Q Consensus       590 l~~L~~L~ls  599 (743)
                      +++++.|+=+
T Consensus       278 L~~v~vLNGs  287 (418)
T KOG2982|consen  278 LTKVQVLNGS  287 (418)
T ss_pred             ccceEEecCc
Confidence            5666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.18  E-value=1.8e-07  Score=87.64  Aligned_cols=62  Identities=24%  Similarity=0.255  Sum_probs=27.5

Q ss_pred             CCccEEECcCCcCcccCC-----ccccCCCCCCEEECCCCcCccc----CCccccCCCCCcEEEccCcccc
Q 041683          328 NNIEFLKLSKNNFSGDIP-----DCWMNWLRLRALNLGHNNFTGS----LPMSIGTLSSLLSLNLRNNILS  389 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~  389 (743)
                      .+|+.+.+..|.|.-..-     ..+..+.+|+.|||..|.++..    ...++...+.|++|.+.+|-++
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence            356666666665541100     1122345555555555555421    1122333344555555555444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.09  E-value=9.6e-07  Score=82.90  Aligned_cols=217  Identities=12%  Similarity=0.152  Sum_probs=106.2

Q ss_pred             CCCCCCEEEcCCCccccc----cCcccccCCCCCCEEEcCCCCcCCcc-----------cchhccCCCCCCEEEccCCcC
Q 041683           40 KVNDLEFLSVYSNRLQGN----VSSLGLENLTSIKRLYLSENDELGGK-----------IPTSFGKLCKLTSFSMRFTKL  104 (743)
Q Consensus        40 ~l~~L~~L~Ls~n~l~~~----~~~~~~~~l~~L~~L~Ls~~~~l~~~-----------~~~~l~~l~~L~~L~L~~n~l  104 (743)
                      .+..+..++||+|.|...    +.. .+.+-.+|+..+++ . .+++.           +..++.+|++|+..+|+.|.+
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfs-d-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFS-D-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehh-h-hhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            355566666666655421    111 23444556666655 1 12221           123456777777777777777


Q ss_pred             cccchhhhhcccccccCCccEEEccCCcCccc----chh---------hccCCCCCCEEECcCccCccccc----hhccC
Q 041683          105 SQDISEILGIFSACVANELESLRLGSSQIFGH----LTN---------QLRRFKRLNSLDLSNTILDGSIP----FSLGQ  167 (743)
Q Consensus       105 ~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~----~~~---------~l~~l~~L~~L~Ls~n~l~~~~~----~~~~~  167 (743)
                      ....|+.++.+-. ....|++|.+++|.+--.    +..         -...-|.|++.....|++..-..    ..|..
T Consensus       105 g~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             CcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            6665554443321 112677777777765211    111         12234567777777766642111    12222


Q ss_pred             CCCCCEEEccCCCCccc----cChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCC
Q 041683          168 ISNLEYLDLSNNKLNGT----VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRE  243 (743)
Q Consensus       168 l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  243 (743)
                      -..|+++.+.+|.|.-.    +.-..+..+.+|+.||+..|.++.....                    .....+...+.
T Consensus       184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~--------------------~La~al~~W~~  243 (388)
T COG5238         184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSR--------------------YLADALCEWNL  243 (388)
T ss_pred             hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHH--------------------HHHHHhcccch
Confidence            34666777777766411    1111234455566666666554422110                    12223333445


Q ss_pred             CCEEEccCCCCccccChhhhhh-----cccCceEecccCccc
Q 041683          244 LNDLDISSTRISAKIPRGFWNS-----IYQYFYLNISGNQIY  280 (743)
Q Consensus       244 L~~L~l~~n~i~~~~~~~~~~~-----l~~L~~L~l~~n~l~  280 (743)
                      |++|.+.+|-++......++..     .++|..|-..+|.+.
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            6666666666654444333322     345556666666544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=1.1e-06  Score=83.59  Aligned_cols=212  Identities=18%  Similarity=0.155  Sum_probs=97.8

Q ss_pred             CCCCCEEECCCCCCCCCC-chhh-cCCCCCCEEEcCCCcccc--ccCcccccCCCCCCEEEcCCCCcCCcccchhccCCC
Q 041683           17 LTSLKYLDLSSNELNSTV-LGWL-SKVNDLEFLSVYSNRLQG--NVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLC   92 (743)
Q Consensus        17 l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~   92 (743)
                      ..-++.|-+.++.|..+. ...| ..+++++.|||.+|.|++  .+.. .+.++|.|++|+|+ +|.+...+..--....
T Consensus        44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls-~N~L~s~I~~lp~p~~  121 (418)
T KOG2982|consen   44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLS-CNSLSSDIKSLPLPLK  121 (418)
T ss_pred             ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeecc-CCcCCCccccCccccc
Confidence            334445555666664432 1223 345677778888887762  1222 35677777777777 5555433322223455


Q ss_pred             CCCEEEccCCcCcccch-hhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCC
Q 041683           93 KLTSFSMRFTKLSQDIS-EILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL  171 (743)
Q Consensus        93 ~L~~L~L~~n~l~~~~~-~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (743)
                      +|+.|.|.+..+.-... ..+..++     .+++|+++.|.+              +.+++..+.+...-       +.+
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP-----~vtelHmS~N~~--------------rq~n~Dd~c~e~~s-------~~v  175 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLP-----KVTELHMSDNSL--------------RQLNLDDNCIEDWS-------TEV  175 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcch-----hhhhhhhccchh--------------hhhccccccccccc-------hhh
Confidence            66666666655543211 2223333     445555544422              11122222221110       122


Q ss_pred             CEEEccCCCCccccChh-hhcCCCCCCEEECCCCcceeecC-CCCCCCccccEEEcCCCcCCC-CcchhhcCCCCCCEEE
Q 041683          172 EYLDLSNNKLNGTVSEI-HFVNLTKLAFFRANGNSLIFKIN-PNWVPPFQLTVLELRSCHLGP-RFPLWLQSQRELNDLD  248 (743)
Q Consensus       172 ~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~  248 (743)
                      ++|.+-.|......... .-.-.+++..+.+..|++..... ..+.+.+.+.-|+++.+++.. ...+.+.++++|..|.
T Consensus       176 ~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlR  255 (418)
T KOG2982|consen  176 LTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLR  255 (418)
T ss_pred             hhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheee
Confidence            33333222211000000 01112344445555554432221 233444445556666666543 2234566777777777


Q ss_pred             ccCCCCcc
Q 041683          249 ISSTRISA  256 (743)
Q Consensus       249 l~~n~i~~  256 (743)
                      ++++.+.+
T Consensus       256 v~~~Pl~d  263 (418)
T KOG2982|consen  256 VSENPLSD  263 (418)
T ss_pred             ccCCcccc
Confidence            77777754

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=4.3e-05  Score=78.64  Aligned_cols=76  Identities=13%  Similarity=0.197  Sum_probs=51.4

Q ss_pred             ccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCC-cCcccCCccccCCCC
Q 041683          372 IGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSN-KFHGDFPIQLCGLAF  450 (743)
Q Consensus       372 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  450 (743)
                      +..+.+++.|++++|.++.. |.   -.++|++|.+++|.-...+|..+   .++|+.|++++| .+. .+|      .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence            44568899999999987743 41   23469999998865444667543   357889999988 444 344      34


Q ss_pred             ccEEEccCCcc
Q 041683          451 LQILDVASNSL  461 (743)
Q Consensus       451 L~~L~Ls~N~l  461 (743)
                      |+.|+++++..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            77777776554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.90  E-value=6.6e-06  Score=55.95  Aligned_cols=35  Identities=37%  Similarity=0.664  Sum_probs=14.0

Q ss_pred             CCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683          545 LQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS  580 (743)
Q Consensus       545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (743)
                      |++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23333444444444444444443

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.80  E-value=4.4e-05  Score=69.04  Aligned_cols=104  Identities=23%  Similarity=0.205  Sum_probs=64.0

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCch-hHHhcccCCcEEE
Q 041683          353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS-WIGERFSILKILN  431 (743)
Q Consensus       353 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~  431 (743)
                      ....+||++|.+...  ..|..++.|.+|.+.+|+|+.+.|.--.-+++|..|.+.+|.|. .+.+ .-...++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            456677777776522  34666677777777777777666655555566777777777664 2211 1112467777777


Q ss_pred             ccCCcCcccC---CccccCCCCccEEEccCC
Q 041683          432 LRSNKFHGDF---PIQLCGLAFLQILDVASN  459 (743)
Q Consensus       432 L~~n~l~~~~---~~~~~~l~~L~~L~Ls~N  459 (743)
                      +-+|.+...-   -..+..+++|+.||..+=
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            7777765321   124667888888887654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.78  E-value=2.9e-05  Score=52.82  Aligned_cols=36  Identities=44%  Similarity=0.683  Sum_probs=19.3

Q ss_pred             CCCEEECcCccCccccchhccCCCCCCEEEccCCCCc
Q 041683          146 RLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN  182 (743)
Q Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  182 (743)
                      +|++|++++|.|+ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555666666655 33444556666666666666555

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.58  E-value=0.00011  Score=66.56  Aligned_cols=85  Identities=21%  Similarity=0.250  Sum_probs=61.6

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      +...+||++|.+...  ..|..++.|.+|.+.+|.|+.+.|.--.-+++|..|.|.+|.|...-.-..+..+++|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            667788888887433  237788888999999999987766554556788889999988873222234677778888888


Q ss_pred             CCCccee
Q 041683          202 NGNSLIF  208 (743)
Q Consensus       202 ~~n~~~~  208 (743)
                      -+|+++.
T Consensus       121 l~Npv~~  127 (233)
T KOG1644|consen  121 LGNPVEH  127 (233)
T ss_pred             cCCchhc
Confidence            8877653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.57  E-value=0.00018  Score=63.22  Aligned_cols=86  Identities=14%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             CCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccC
Q 041683           11 PSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGK   90 (743)
Q Consensus        11 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~   90 (743)
                      ..+|.++++|+.+.+.. .+..+...+|.++++|+.+++..+ +. .++..+|.++++|+.+.+. + .+......+|..
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~-~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP-N-NLKSIGDNAFSN   79 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET-S-TT-EE-TTTTTT
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc-c-cccccccccccc
Confidence            45777888888888774 566667777888877888888775 55 5666677777778888876 3 333333445666


Q ss_pred             CCCCCEEEccC
Q 041683           91 LCKLTSFSMRF  101 (743)
Q Consensus        91 l~~L~~L~L~~  101 (743)
                      +++|+.+++..
T Consensus        80 ~~~l~~i~~~~   90 (129)
T PF13306_consen   80 CTNLKNIDIPS   90 (129)
T ss_dssp             -TTECEEEETT
T ss_pred             cccccccccCc
Confidence            66666666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.56  E-value=0.00021  Score=62.87  Aligned_cols=120  Identities=21%  Similarity=0.189  Sum_probs=56.6

Q ss_pred             CCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683          325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV  404 (743)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  404 (743)
                      ..+++|+.+.+.. .+..+....|..+++|+.+.+.++ +......+|.++++++.+.+.+ .+.......|..+++|+.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            3455677777764 455566667777777777777664 5545556677776777777765 444455566777777777


Q ss_pred             EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCc
Q 041683          405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFL  451 (743)
Q Consensus       405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  451 (743)
                      +++..+ +. .++...+.++ .|+.+.+.. .+..+....|.++++|
T Consensus        86 i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   86 IDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            777654 43 4555555454 667666665 3333444456555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.47  E-value=0.00035  Score=72.09  Aligned_cols=92  Identities=18%  Similarity=0.237  Sum_probs=62.7

Q ss_pred             ccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC-cCcccCchhHHhcccC
Q 041683          348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN-ELVGSIPSWIGERFSI  426 (743)
Q Consensus       348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~  426 (743)
                      +..+.+++.|++++|.++ .+|. +  .++|++|.+++|.-....|+.+  .++|+.|++++| .+. .+|       ++
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP-------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP-------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc-------cc
Confidence            445688999999999888 4552 2  3479999999875444666655  368999999999 444 454       35


Q ss_pred             CcEEEccCCcCcccCCccccCC-CCccEEEccC
Q 041683          427 LKILNLRSNKFHGDFPIQLCGL-AFLQILDVAS  458 (743)
Q Consensus       427 L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~  458 (743)
                      |+.|+++++....     +..+ ++|+.|.+.+
T Consensus       114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~  141 (426)
T PRK15386        114 VRSLEIKGSATDS-----IKNVPNGLTSLSINS  141 (426)
T ss_pred             cceEEeCCCCCcc-----cccCcchHhheeccc
Confidence            7888887765531     1222 2566777654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.46  E-value=6.9e-05  Score=84.11  Aligned_cols=186  Identities=23%  Similarity=0.290  Sum_probs=107.7

Q ss_pred             CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccc-------cC-----cccc--cCCCCCCEEEcCCCCcCC
Q 041683           16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGN-------VS-----SLGL--ENLTSIKRLYLSENDELG   81 (743)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~-----~~~~--~~l~~L~~L~Ls~~~~l~   81 (743)
                      ..-++...++.+..+.....+...... |++|.|.+-.....       +.     ...+  ..-.+|++||+++...+.
T Consensus        58 ~~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s  136 (699)
T KOG3665|consen   58 RKFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS  136 (699)
T ss_pred             hhheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence            333556666666655444444444444 66666654321110       00     0011  123578888888654444


Q ss_pred             cccchhcc-CCCCCCEEEccCCcCccc-chhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcc
Q 041683           82 GKIPTSFG-KLCKLTSFSMRFTKLSQD-ISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG  159 (743)
Q Consensus        82 ~~~~~~l~-~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  159 (743)
                      ..-|..++ .+|.|++|.+++-.+... .......++     +|..||+++.+++..  ..++++++|++|.+.+=.+..
T Consensus       137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-----NL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~  209 (699)
T KOG3665|consen  137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-----NLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFES  209 (699)
T ss_pred             ccHHHHHhhhCcccceEEecCceecchhHHHHhhccC-----ccceeecCCCCccCc--HHHhccccHHHHhccCCCCCc
Confidence            33344443 468888888877665432 223334444     888888888887544  567888888888887766553


Q ss_pred             -ccchhccCCCCCCEEEccCCCCcccc--Ch---hhhcCCCCCCEEECCCCcceee
Q 041683          160 -SIPFSLGQISNLEYLDLSNNKLNGTV--SE---IHFVNLTKLAFFRANGNSLIFK  209 (743)
Q Consensus       160 -~~~~~~~~l~~L~~L~L~~n~l~~~~--~~---~~~~~l~~L~~L~l~~n~~~~~  209 (743)
                       ..-..+.++++|+.||+|........  ..   ..-..+|+|+.||.+++.+...
T Consensus       210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  210 YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence             12235667888888888876654111  11   0124578888888888766543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.43  E-value=5.4e-05  Score=84.95  Aligned_cols=127  Identities=20%  Similarity=0.148  Sum_probs=57.6

Q ss_pred             CCCCCEEECcCccCccc-cchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCccee-ecCCCCCCCcccc
Q 041683          144 FKRLNSLDLSNTILDGS-IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIF-KINPNWVPPFQLT  221 (743)
Q Consensus       144 l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~  221 (743)
                      +|+|++|.+++-.+... .-....++++|..||+|+.+++ .+.  .++++++|+.|.+.+-.+.. ..-..+..+.+|+
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~--GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLS--GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcH--HHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            45555555544433211 1112234455555555555544 221  24455555555444433221 1111233344444


Q ss_pred             EEEcCCCcCCCCc------chhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEe
Q 041683          222 VLELRSCHLGPRF------PLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLN  273 (743)
Q Consensus       222 ~L~l~~n~l~~~~------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  273 (743)
                      +||+|........      -+.-..+|+|+.||.|++.+.+.+-+.+...-++|+.+.
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence            5554443322111      111234678888888888777655555544444554443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.16  E-value=4.5e-05  Score=76.55  Aligned_cols=81  Identities=26%  Similarity=0.256  Sum_probs=40.9

Q ss_pred             CCCCCCEEECCCCcCc-cc----CCccccCCCCCcEEEccCcccc-ccCCcccCCCCCCCEEeCCCCcCcccCc-hhHHh
Q 041683          350 NWLRLRALNLGHNNFT-GS----LPMSIGTLSSLLSLNLRNNILS-GIIPTSFKNFSSLEVLDLGENELVGSIP-SWIGE  422 (743)
Q Consensus       350 ~l~~L~~L~Ls~n~l~-~~----~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~  422 (743)
                      +++.|+.|.++++... ..    ....-.++..|+.+.++++... +..-..+..+++|+.+++-+++-...-+ ..+..
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~  449 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFAT  449 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHh
Confidence            4455566655555432 11    0112234556777777777543 2333455667778887777775321211 12223


Q ss_pred             cccCCcEE
Q 041683          423 RFSILKIL  430 (743)
Q Consensus       423 ~l~~L~~L  430 (743)
                      +++++++.
T Consensus       450 ~lp~i~v~  457 (483)
T KOG4341|consen  450 HLPNIKVH  457 (483)
T ss_pred             hCccceeh
Confidence            45555543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.00  E-value=4.2e-05  Score=76.76  Aligned_cols=300  Identities=16%  Similarity=0.045  Sum_probs=162.8

Q ss_pred             CccEEEccCCcCcccch--hhccCCCCCCEEECcCccC-ccccchhc-cCCCCCCEEEccCCC-CccccChhhhcCCCCC
Q 041683          122 ELESLRLGSSQIFGHLT--NQLRRFKRLNSLDLSNTIL-DGSIPFSL-GQISNLEYLDLSNNK-LNGTVSEIHFVNLTKL  196 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L  196 (743)
                      .|+.|.++++.-.+.-+  ....+++++++|++.++.. ++..-..+ ..+++|++|++..|. ++...-...-..+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            57777777766433322  2345677788887777652 22211122 346778888887743 3322211123467778


Q ss_pred             CEEECCCCcceee--cCCCCCCCccccEEEcCCCcCCCC--cchhhcCCCCCCEEEccCCC-CccccChhhhhhcccCce
Q 041683          197 AFFRANGNSLIFK--INPNWVPPFQLTVLELRSCHLGPR--FPLWLQSQRELNDLDISSTR-ISAKIPRGFWNSIYQYFY  271 (743)
Q Consensus       197 ~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~  271 (743)
                      ++++++.+.-...  +..-+.+...++.+.+.+|.-.+.  +...-..+..+..+++.+|. +++.---.+...+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            8888877643211  111223344456665665532110  11111334556677766663 332221223334567788


Q ss_pred             EecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCccc-CCcc-cc
Q 041683          272 LNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD-IPDC-WM  349 (743)
Q Consensus       272 L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~-~~  349 (743)
                      ++.+++.-.+..+                                   +..--..+++|+.|-++.++.-+. --.. -.
T Consensus       299 l~~s~~t~~~d~~-----------------------------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  299 LCYSSCTDITDEV-----------------------------------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGR  343 (483)
T ss_pred             hcccCCCCCchHH-----------------------------------HHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence            8877664221110                                   000112357888888888863211 1111 13


Q ss_pred             CCCCCCEEECCCCcCc--ccCCccccCCCCCcEEEccCccccccC-----CcccCCCCCCCEEeCCCCcCcccCchhHHh
Q 041683          350 NWLRLRALNLGHNNFT--GSLPMSIGTLSSLLSLNLRNNILSGII-----PTSFKNFSSLEVLDLGENELVGSIPSWIGE  422 (743)
Q Consensus       350 ~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  422 (743)
                      +++.|+.+++..+...  +.+...-.+++.|+.|.+++|......     ...-..+..|+.+.+++++...+-.-....
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence            5678999999887644  122233346889999999998643221     222345678999999999865222222234


Q ss_pred             cccCCcEEEccCCcCccc--CCccccCCCCccEEEc
Q 041683          423 RFSILKILNLRSNKFHGD--FPIQLCGLAFLQILDV  456 (743)
Q Consensus       423 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L  456 (743)
                      .+++|+.+++-+++-...  +...-..+|+++..-+
T Consensus       424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            678999999988764322  2223346777766543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.66  E-value=0.001  Score=63.18  Aligned_cols=61  Identities=25%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCcEEEccCc--cccccCCcccCCCCCCCEEeCCCCcCc
Q 041683          351 WLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN--ILSGIIPTSFKNFSSLEVLDLGENELV  413 (743)
Q Consensus       351 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~Ls~n~i~  413 (743)
                      +..|+.|++.+..++..  ..|..+++|++|.++.|  ++.+-++.....+++|+++++++|+|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            33444444444444321  12333445555555555  333333333334455555555555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=9.3e-05  Score=70.17  Aligned_cols=101  Identities=23%  Similarity=0.206  Sum_probs=76.3

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCC-cccCCCCCCCEE
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIP-TSFKNFSSLEVL  405 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L  405 (743)
                      +.+.++|+..+|.+..+  .....++.|+.|.||-|+|+..  ..+..|++|++|+|..|.|.++.. ..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            45688999999998854  3456789999999999999854  347889999999999999875422 346788999999


Q ss_pred             eCCCCcCcccCchh----HHhcccCCcEEE
Q 041683          406 DLGENELVGSIPSW----IGERFSILKILN  431 (743)
Q Consensus       406 ~Ls~n~i~~~~~~~----~~~~l~~L~~L~  431 (743)
                      +|..|+-.+.-+..    +...+++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99999876655432    233467777765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.50  E-value=0.0017  Score=61.76  Aligned_cols=57  Identities=26%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             CccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCcccc---chhccCCCCCCEEEccC
Q 041683          122 ELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGSI---PFSLGQISNLEYLDLSN  178 (743)
Q Consensus       122 ~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~  178 (743)
                      +|++|++++|++.. .--..+..+++|..|++.+|..+...   -..|.-+++|++||-..
T Consensus        92 ~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen   92 NLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             ceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            45555555554421 00012445666777777777665421   12455567777776443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.24  E-value=0.0002  Score=68.02  Aligned_cols=83  Identities=23%  Similarity=0.263  Sum_probs=42.7

Q ss_pred             CCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc-ccchhccCCCCCC
Q 041683           17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG-KIPTSFGKLCKLT   95 (743)
Q Consensus        17 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~-~~~~~l~~l~~L~   95 (743)
                      +.+.+.|++=++.++++  ....+++.|++|.||-|.|+ .+.  .|.+|++|+.|+|..|+ +.. ..-..+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhh
Confidence            34455566666655443  22445666666666666665 444  25666666666666332 221 1122345555555


Q ss_pred             EEEccCCcCc
Q 041683           96 SFSMRFTKLS  105 (743)
Q Consensus        96 ~L~L~~n~l~  105 (743)
                      .|.|..|.-.
T Consensus        92 ~LWL~ENPCc  101 (388)
T KOG2123|consen   92 TLWLDENPCC  101 (388)
T ss_pred             hHhhccCCcc
Confidence            5555555433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.57  E-value=0.003  Score=69.83  Aligned_cols=59  Identities=31%  Similarity=0.289  Sum_probs=25.3

Q ss_pred             CccEEEccCCc-Ccccchhhcc-CCCCCCEEECcCcc-Cccccchh-ccCCCCCCEEEccCCC
Q 041683          122 ELESLRLGSSQ-IFGHLTNQLR-RFKRLNSLDLSNTI-LDGSIPFS-LGQISNLEYLDLSNNK  180 (743)
Q Consensus       122 ~L~~L~L~~n~-~~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n~  180 (743)
                      +|+.|+++++. ++...-..+. .+++|++|.+.++. +++..-.. ...++.|++|+++++.
T Consensus       244 ~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  244 KLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             CcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            45555555554 3222222222 24555555554444 33221111 2234555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.55  E-value=0.0033  Score=69.46  Aligned_cols=112  Identities=19%  Similarity=0.037  Sum_probs=48.3

Q ss_pred             CCCCCEEEcCCCccccc--cCcccccCCCCCCEEEcCCCCcCCccc----chhccCCCCCCEEEccCCc-Ccccchhhhh
Q 041683           41 VNDLEFLSVYSNRLQGN--VSSLGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTK-LSQDISEILG  113 (743)
Q Consensus        41 l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~Ls~~~~l~~~~----~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~  113 (743)
                      +++|+.|.+..+.-...  +.. ....++.|+.|+++++.......    ......+.+|+.|+++.+. ++...-..+.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDA-LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccccCChhhHHH-HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            45566665555532212  111 34455566666665311111111    1123344556666665555 3322222222


Q ss_pred             cccccccCCccEEEccCCc-Ccccch-hhccCCCCCCEEECcCccC
Q 041683          114 IFSACVANELESLRLGSSQ-IFGHLT-NQLRRFKRLNSLDLSNTIL  157 (743)
Q Consensus       114 ~l~~~~~~~L~~L~L~~n~-~~~~~~-~~l~~l~~L~~L~Ls~n~l  157 (743)
                      ..    +++|++|.+.+|. ++...- .....+++|++|+++++..
T Consensus       266 ~~----c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  266 SR----CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hh----CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            21    1156666655555 322221 1223455666666665544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.25  E-value=0.0071  Score=34.01  Aligned_cols=11  Identities=55%  Similarity=0.549  Sum_probs=4.5

Q ss_pred             CEEeCCCCcCc
Q 041683          546 QSLNLSHNLLT  556 (743)
Q Consensus       546 ~~L~Ls~N~l~  556 (743)
                      ++|||++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.11  E-value=0.0083  Score=33.73  Aligned_cols=21  Identities=57%  Similarity=0.835  Sum_probs=12.3

Q ss_pred             CccEEECcCCcCCCCCCccccC
Q 041683          568 SIESLDLSANQLSGQIPQSMSN  589 (743)
Q Consensus       568 ~L~~L~Ls~N~l~~~~p~~l~~  589 (743)
                      +|++||+++|+++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566666666666 45554543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.08  E-value=0.00044  Score=74.28  Aligned_cols=89  Identities=25%  Similarity=0.203  Sum_probs=47.8

Q ss_pred             CCCCCcEEEccCccccccC----CcccCCCCC-CCEEeCCCCcCcccCchhHHh---cc-cCCcEEEccCCcCcccCC--
Q 041683          374 TLSSLLSLNLRNNILSGII----PTSFKNFSS-LEVLDLGENELVGSIPSWIGE---RF-SILKILNLRSNKFHGDFP--  442 (743)
Q Consensus       374 ~l~~L~~L~L~~n~i~~~~----~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~---~l-~~L~~L~L~~n~l~~~~~--  442 (743)
                      ...++++|.+++|.++...    ...+...++ +..+++..|.+.+..-.....   .+ ..++.++++.|.+...-.  
T Consensus       202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~  281 (478)
T KOG4308|consen  202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRD  281 (478)
T ss_pred             ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHH
Confidence            3556666666666655211    122333444 556777777665332222211   12 345677777777764322  


Q ss_pred             --ccccCCCCccEEEccCCccc
Q 041683          443 --IQLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       443 --~~~~~l~~L~~L~Ls~N~l~  462 (743)
                        ..+..++.++++.+++|.+.
T Consensus       282 L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  282 LAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHhhhHHHHHhhcccCccc
Confidence              23445567777777777665

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.90  E-value=0.0022  Score=59.51  Aligned_cols=84  Identities=20%  Similarity=0.236  Sum_probs=74.4

Q ss_pred             cccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeee
Q 041683          518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLN  597 (743)
Q Consensus       518 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  597 (743)
                      ....+.||++.|++. .....|+-++.|..||++.|.+. ..|+.++.+..+..+++..|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            445688999999987 44556788899999999999998 88999999999999999999998 7899999999999999


Q ss_pred             CcCCccc
Q 041683          598 LSNNNLV  604 (743)
Q Consensus       598 ls~N~l~  604 (743)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999975

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.89  E-value=0.0011  Score=71.16  Aligned_cols=164  Identities=25%  Similarity=0.219  Sum_probs=104.6

Q ss_pred             EecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC----ccccCC-CCCCEEECCCCcCccc----CCccccCCC
Q 041683          306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP----DCWMNW-LRLRALNLGHNNFTGS----LPMSIGTLS  376 (743)
Q Consensus       306 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~l~~~----~~~~~~~l~  376 (743)
                      ++.+|.+.......++..+...+.|+.|++++|.+.....    ..+... ..+++|++..|.++..    +...+....
T Consensus        93 ~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~  172 (478)
T KOG4308|consen   93 SLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNE  172 (478)
T ss_pred             hhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhccc
Confidence            3444444444556666777778889999999998873221    223332 5677788888887743    334555678


Q ss_pred             CCcEEEccCccccc----cCCcccC----CCCCCCEEeCCCCcCcccCchhH---HhcccC-CcEEEccCCcCccc----
Q 041683          377 SLLSLNLRNNILSG----IIPTSFK----NFSSLEVLDLGENELVGSIPSWI---GERFSI-LKILNLRSNKFHGD----  440 (743)
Q Consensus       377 ~L~~L~L~~n~i~~----~~~~~~~----~l~~L~~L~Ls~n~i~~~~~~~~---~~~l~~-L~~L~L~~n~l~~~----  440 (743)
                      .++.++++.|.+..    ..+..+.    ...++++|.+++|.++...-..+   ....+. +..+++..|.+...    
T Consensus       173 ~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~  252 (478)
T KOG4308|consen  173 HLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEK  252 (478)
T ss_pred             chhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHH
Confidence            89999999998741    1222333    46789999999998863222111   112334 66789999988743    


Q ss_pred             CCccccCC-CCccEEEccCCccccccCccc
Q 041683          441 FPIQLCGL-AFLQILDVASNSLSGTIPRCI  469 (743)
Q Consensus       441 ~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~  469 (743)
                      ....+..+ ..++.++++.|.|...-...+
T Consensus       253 L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  253 LLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             HHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            22234555 678999999999886544433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.58  E-value=0.076  Score=27.59  Aligned_cols=11  Identities=55%  Similarity=0.794  Sum_probs=3.5

Q ss_pred             CCEEeCCCCcC
Q 041683          545 LQSLNLSHNLL  555 (743)
Q Consensus       545 L~~L~Ls~N~l  555 (743)
                      |++|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.12  E-value=0.1  Score=27.13  Aligned_cols=13  Identities=38%  Similarity=0.570  Sum_probs=4.9

Q ss_pred             CCCEEEcCCCccc
Q 041683           43 DLEFLSVYSNRLQ   55 (743)
Q Consensus        43 ~L~~L~Ls~n~l~   55 (743)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3445555555443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.02  E-value=0.15  Score=29.93  Aligned_cols=21  Identities=43%  Similarity=0.524  Sum_probs=11.5

Q ss_pred             CCCCEEECCCCCCCCCCchhh
Q 041683           18 TSLKYLDLSSNELNSTVLGWL   38 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~~~~~~~~   38 (743)
                      ++|++|+|++|+|..+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455566666665555544444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.02  E-value=0.15  Score=29.93  Aligned_cols=21  Identities=43%  Similarity=0.524  Sum_probs=11.5

Q ss_pred             CCCCEEECCCCCCCCCCchhh
Q 041683           18 TSLKYLDLSSNELNSTVLGWL   38 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~~~~~~~~   38 (743)
                      ++|++|+|++|+|..+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455566666665555544444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.18  E-value=0.045  Score=50.16  Aligned_cols=85  Identities=16%  Similarity=0.092  Sum_probs=63.4

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCccccc-CCCCCCEEEcCCCCcCCcccchhccCCCCCCEE
Q 041683           19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLE-NLTSIKRLYLSENDELGGKIPTSFGKLCKLTSF   97 (743)
Q Consensus        19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L   97 (743)
                      .++.+|-++..|..+.-+-+.+++.++.|.+.+|.--+..--..++ -.++|+.|++++|..+++.--..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4688999999888877778888899999999888643221100121 347899999998888888777788888888888


Q ss_pred             EccCCc
Q 041683           98 SMRFTK  103 (743)
Q Consensus        98 ~L~~n~  103 (743)
                      .+.+-.
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            876543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.69  E-value=0.26  Score=28.89  Aligned_cols=14  Identities=57%  Similarity=0.731  Sum_probs=7.3

Q ss_pred             CCccEEECcCCcCC
Q 041683          567 RSIESLDLSANQLS  580 (743)
Q Consensus       567 ~~L~~L~Ls~N~l~  580 (743)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.69  E-value=0.26  Score=28.89  Aligned_cols=14  Identities=57%  Similarity=0.731  Sum_probs=7.3

Q ss_pred             CCccEEECcCCcCC
Q 041683          567 RSIESLDLSANQLS  580 (743)
Q Consensus       567 ~~L~~L~Ls~N~l~  580 (743)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.10  E-value=0.0081  Score=55.89  Aligned_cols=90  Identities=18%  Similarity=0.143  Sum_probs=70.7

Q ss_pred             CCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCC
Q 041683           12 SRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKL   91 (743)
Q Consensus        12 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l   91 (743)
                      ..+..+...+.||++.|++... -.-|..++.|..||++.|.+. ..|. .+.....++++++.+||.  ...|.++++.
T Consensus        36 ~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~-d~~q~~e~~~~~~~~n~~--~~~p~s~~k~  110 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPK-DAKQQRETVNAASHKNNH--SQQPKSQKKE  110 (326)
T ss_pred             hhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChh-hHHHHHHHHHHHhhccch--hhCCcccccc
Confidence            5677888889999999887443 345777888899999999987 7777 788888888888884443  3678889999


Q ss_pred             CCCCEEEccCCcCcc
Q 041683           92 CKLTSFSMRFTKLSQ  106 (743)
Q Consensus        92 ~~L~~L~L~~n~l~~  106 (743)
                      ++++++++..+.+..
T Consensus       111 ~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  111 PHPKKNEQKKTEFFR  125 (326)
T ss_pred             CCcchhhhccCcchH
Confidence            999999988887543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.97  E-value=0.18  Score=46.43  Aligned_cols=82  Identities=13%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             CCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCc-hhHHhcccCCcEEEccCC-cCcccCCccccCCCCccEE
Q 041683          377 SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP-SWIGERFSILKILNLRSN-KFHGDFPIQLCGLAFLQIL  454 (743)
Q Consensus       377 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  454 (743)
                      .++.++.++..|..+.-+.+.+++.++.|.+.+|.-.+..- ..+..-.++|+.|++++| +|+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            34445555555544444444555555555555553211100 011112345555555554 2332222234455555555


Q ss_pred             EccC
Q 041683          455 DVAS  458 (743)
Q Consensus       455 ~Ls~  458 (743)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            5544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.61  E-value=0.28  Score=28.09  Aligned_cols=13  Identities=46%  Similarity=0.687  Sum_probs=4.9

Q ss_pred             CCCEEECcCccCc
Q 041683          146 RLNSLDLSNTILD  158 (743)
Q Consensus       146 ~L~~L~Ls~n~l~  158 (743)
                      +|++|+|++|.|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444444

...

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=81.27  E-value=4.6  Score=42.40  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=17.1

Q ss_pred             ccEEEccCCcCcccCch---hhcccCCCCEEeCCCCcCc
Q 041683          521 VRSIDVSKNIFSGEIPV---EVTNLQGLQSLNLSHNLLT  556 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~  556 (743)
                      +..+.++.|.+......   .+..-+.+..|++++|...
T Consensus       415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg  453 (553)
T KOG4242|consen  415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG  453 (553)
T ss_pred             ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence            34555555555422111   1233455666666666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	743
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-33
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-19
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-33
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-19
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-10

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 177/677 (26%), Positives = 276/677 (40%), Gaps = 68/677 (10%)
Query: 1   LSGNQFQGQIPS--RLGNLTSLKYLDLSSNELN--STVLGWLSKVNDLEFLSVYSNRLQG 56
           LS N   G + +   LG+ + LK+L++SSN L+    V G L K+N LE L + +N + G
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG 165
Query: 57  -NVSSLGL-ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQD-ISEILG 113
            NV    L +    +K L +S N ++ G +  S          ++ F  +S +  S  + 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGN-KISGDVDVS-------RCVNLEFLDVSSNNFSTGIP 217
Query: 114 IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY 173
               C A  L+ L +  +++ G  +  +     L  L++S+    G IP     + +L+Y
Sbjct: 218 FLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273
Query: 174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPR 233
           L L+ NK  G + +        L     +GN     + P +     L  L L S +    
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 234 FPL-WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMP 292
            P+  L   R L  LD+S    S ++P    N       L++S N        F  P +P
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-------FSGPILP 386
Query: 293 -LITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEF--LKLSKNNFSGDIPDCWM 349
            L   P + L  ++ L NN  +G I          SN  E   L LS N  SG IP    
Sbjct: 387 NLCQNPKNTLQELY-LQNNGFTGKI------PPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 350 NWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGE 409
           +  +LR L L  N   G +P                       P+   N ++L  + L  
Sbjct: 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 410 NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCI 469
           N L G IP WIG R   L IL L +N F G+ P +L     L  LD+ +N  +GTIP  +
Sbjct: 500 NRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 470 NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDAS--LVMKGVLVEYNSILNLVRSIDVS 527
              S     +       +Y  ++++G  +    A   L  +G+  E  + L+     +++
Sbjct: 559 FKQSGKIAANFIAGKRYVY--IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616
Query: 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLL------------------------TGRIPDNI 563
             ++ G       N   +  L++S+N+L                        +G IPD +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676
Query: 564 GVMRSIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAG 623
           G +R +  LDLS+N+L G+IPQ                   G IP   Q ++F  + F  
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Query: 624 ND-LCGDPLSNCTEKNV 639
           N  LCG PL  C   N 
Sbjct: 737 NPGLCGYPLPRCDPSNA 753

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 200/462 (43%), Gaps = 53/462 (11%)
Query: 136 HLTNQLRRFK---RLNSLDLSNTILDGSIPF--SLGQISNLEYLDLSNNKLNGTVSEIHF 190
           H+   +  FK    L SLDLS   L G +    SLG  S L++L++S+N L+        
Sbjct: 88  HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147
Query: 191 VNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHL-GPRFPLWLQSQRELN--DL 247
           + L  L     + NS+       WV        EL+   + G +    +   R +N   L
Sbjct: 148 LKLNSLEVLDLSANSISGANVVGWV--LSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205
Query: 248 DISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307
           D+SS   S  IP  F        +L+ISGN++ G   +        I+T ++L   + ++
Sbjct: 206 DVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSR-------AISTCTEL--KLLNI 254
Query: 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTG 366
           S+N   G I  L  +      ++++L L++N F+G+IPD        L  L+L  N+F G
Sbjct: 255 SSNQFVGPIPPLPLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 367 SLPMXXXXXXXXXXXXXXXXXXXXXXPT-SFKNFSSLEVLDLGENELVGSIPSWIGERFS 425
           ++P                       P  +      L+VLDL  NE  G +P  +    +
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 426 ILKILNLRSNKFHGDFPIQLC--GLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQ 483
            L  L+L SN F G     LC      LQ L + +N  +G IP  ++N S +        
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-------- 420
Query: 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ 543
            V L+ S                + G +      L+ +R + +  N+  GEIP E+  ++
Sbjct: 421 -VSLHLSFN-------------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQ 585
            L++L L  N LTG IP  +    ++  + LS N+L+G+IP+
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 177/677 (26%), Positives = 276/677 (40%), Gaps = 68/677 (10%)
Query: 1   LSGNQFQGQIPS--RLGNLTSLKYLDLSSNELN--STVLGWLSKVNDLEFLSVYSNRLQG 56
           LS N   G + +   LG+ + LK+L++SSN L+    V G L K+N LE L + +N + G
Sbjct: 104 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG 162
Query: 57  -NVSSLGL-ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLS-QDISEILG 113
            NV    L +    +K L +S N ++ G +  S          ++ F  +S  + S  + 
Sbjct: 163 ANVVGWVLSDGCGELKHLAISGN-KISGDVDVS-------RCVNLEFLDVSSNNFSTGIP 214
Query: 114 IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY 173
               C A  L+ L +  +++ G  +  +     L  L++S+    G IP     + +L+Y
Sbjct: 215 FLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 270
Query: 174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPR 233
           L L+ NK  G + +        L     +GN     + P +     L  L L S +    
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 234 FPL-WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMP 292
            P+  L   R L  LD+S    S ++P    N       L++S N        F  P +P
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-------FSGPILP 383
Query: 293 -LITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEF--LKLSKNNFSGDIPDCWM 349
            L   P + L  ++ L NN  +G I          SN  E   L LS N  SG IP    
Sbjct: 384 NLCQNPKNTLQELY-LQNNGFTGKI------PPTLSNCSELVSLHLSFNYLSGTIPSSLG 436
Query: 350 NWLRLRALNLGHNNFTGSLPMXXXXXXXXXXXXXXXXXXXXXXPTSFKNFSSLEVLDLGE 409
           +  +LR L L  N   G +P                       P+   N ++L  + L  
Sbjct: 437 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 410 NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCI 469
           N L G IP WIG R   L IL L +N F G+ P +L     L  LD+ +N  +GTIP  +
Sbjct: 497 NRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 470 NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDAS--LVMKGVLVEYNSILNLVRSIDVS 527
              S     +       +Y  ++++G  +    A   L  +G+  E  + L+     +++
Sbjct: 556 FKQSGKIAANFIAGKRYVY--IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 613
Query: 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLL------------------------TGRIPDNI 563
             ++ G       N   +  L++S+N+L                        +G IPD +
Sbjct: 614 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 673
Query: 564 GVMRSIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVGKIPSSTQLQSFGASSFAG 623
           G +R +  LDLS+N+L G+IPQ                   G IP   Q ++F  + F  
Sbjct: 674 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Query: 624 N-DLCGDPLSNCTEKNV 639
           N  LCG PL  C   N 
Sbjct: 734 NPGLCGYPLPRCDPSNA 750

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 200/462 (43%), Gaps = 53/462 (11%)
Query: 136 HLTNQLRRFK---RLNSLDLSNTILDGSIPF--SLGQISNLEYLDLSNNKLNGTVSEIHF 190
           H+   +  FK    L SLDLS   L G +    SLG  S L++L++S+N L+        
Sbjct: 85  HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 144
Query: 191 VNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHL-GPRFPLWLQSQRELN--DL 247
           + L  L     + NS+       WV        EL+   + G +    +   R +N   L
Sbjct: 145 LKLNSLEVLDLSANSISGANVVGWV--LSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 202
Query: 248 DISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307
           D+SS   S  IP  F        +L+ISGN++ G   +        I+T ++L   + ++
Sbjct: 203 DVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDFSR-------AISTCTEL--KLLNI 251
Query: 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTG 366
           S+N   G I  L  +      ++++L L++N F+G+IPD        L  L+L  N+F G
Sbjct: 252 SSNQFVGPIPPLPLK------SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 367 SLPMXXXXXXXXXXXXXXXXXXXXXXPT-SFKNFSSLEVLDLGENELVGSIPSWIGERFS 425
           ++P                       P  +      L+VLDL  NE  G +P  +    +
Sbjct: 306 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 365
Query: 426 ILKILNLRSNKFHGDFPIQLC--GLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQ 483
            L  L+L SN F G     LC      LQ L + +N  +G IP  ++N S +        
Sbjct: 366 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL-------- 417
Query: 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ 543
            V L+ S                + G +      L+ +R + +  N+  GEIP E+  ++
Sbjct: 418 -VSLHLSFN-------------YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQ 585
            L++L L  N LTG IP  +    ++  + LS N+L+G+IP+
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 117/271 (43%), Gaps = 54/271 (19%)
Query: 393 PTSFKNFSSLEVLDLGE-NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFL 451
           P+S  N   L  L +G  N LVG IP  I  + + L  L +      G  P  L  +  L
Sbjct: 69  PSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 452 QILDVASNSLSGTIPRCINNLSAM------------AITDSYDQAVILYSSL-----RSE 494
             LD + N+LSGT+P  I++L  +            AI DSY     L++S+     R  
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 495 GQ-SEIFEDASLVM----KGVLVEYNSIL----NLVRSIDVSKNIFSGEIPVEVTNLQGL 545
           G+    F + +L      + +L    S+L       + I ++KN  + ++  +V   + L
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNL 246
Query: 546 QSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQXXXXXXXXXXXXXXXXXXVG 605
             L+L +N + G +P  +  ++ + SL++S N L G+IPQ                    
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------------- 286
Query: 606 KIPSSTQLQSFGASSFAGND-LCGDPLSNCT 635
                  LQ F  S++A N  LCG PL  CT
Sbjct: 287 ----GGNLQRFDVSAYANNKCLCGSPLPACT 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	743
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-145
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-70
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-48
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-62
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-38
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-52
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-52
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-26
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-36
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-27
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-22
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	6e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  443 bits (1141), Expect = e-145
 Identities = 170/666 (25%), Positives = 272/666 (40%), Gaps = 56/666 (8%)

Query: 1   LSGNQFQGQIPSR--LGNLTSLKYLDLSSNELNSTV-LGWLSKVNDLEFLSVYSNRLQGN 57
           LS N   G + +   LG+ + LK+L++SSN L+    +    K+N LE L + +N + G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 58  V--SSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIF 115
                +  +    +K L +S N ++ G +     +   L    +     S  I  +    
Sbjct: 167 NVVGWVLSDGCGELKHLAISGN-KISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCS 223

Query: 116 SACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD 175
           +      L+ L +  +++ G  +  +     L  L++S+    G IP     + +L+YL 
Sbjct: 224 A------LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275

Query: 176 LSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFP 235
           L+ NK  G + +        L     +GN     + P +     L  L L S +     P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335

Query: 236 L-WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK-FDNPSMPL 293
           +  L   R L  LD+S    S ++P    N       L++S N   G I           
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 294 ITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR 353
           +            L NN  +G I   +       + +  L LS N  SG IP    +  +
Sbjct: 396 LQE--------LYLQNNGFTGKIPPTLSN----CSELVSLHLSFNYLSGTIPSSLGSLSK 443

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           LR L L  N   G +P  +  + +L +L L  N L+G IP+   N ++L  + L  N L 
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
           G IP WIG R   L IL L +N F G+ P +L     L  LD+ +N  +GTIP  +   S
Sbjct: 504 GEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
                +       +Y       +        L  +G+  E  + L+     +++  ++ G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFL 593
                  N   +  L++S+N+L+G IP  IG M  +  L+L  N +SG IP  + +L  L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682

Query: 594 NHLNLSNNNL------------------------VGKIPSSTQLQSFGASSFAGND-LCG 628
           N L+LS+N L                         G IP   Q ++F  + F  N  LCG
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742

Query: 629 DPLSNC 634
            PL  C
Sbjct: 743 YPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  318 bits (817), Expect = 1e-97
 Identities = 166/638 (26%), Positives = 248/638 (38%), Gaps = 91/638 (14%)

Query: 4   NQFQGQIPSRLGNLTSLKYLDLSSNELNSTV--LGWLSKVNDLEFLSVYSNRLQGNVSSL 61
           N     + S L +LT L+ L LS++ +N +V      +    L  L +  N L G V++L
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS---LTSLDLSRNSLSGPVTTL 119

Query: 62  G-LENLTSIKRLYLSENDELGGKIPTS-FGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
             L + + +K L +S N  L      S   KL  L    +    +S        +   C 
Sbjct: 120 TSLGSCSGLKFLNVSSNT-LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC- 177

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
             EL+ L +  ++I G +   + R   L  LD+S+      IP  LG  S L++LD+S N
Sbjct: 178 -GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGN 233

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF---QLTVLELRSCHLGPRFPL 236
           KL+G  S       T+L     + N  +  I     PP     L  L L         P 
Sbjct: 234 KLSGDFSR-AISTCTELKLLNISSNQFVGPI-----PPLPLKSLQYLSLAENKFTGEIPD 287

Query: 237 WLQSQ-RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLIT 295
           +L      L  LD+S       +P  F +       L +S N   G +P      M  + 
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLK 346

Query: 296 TPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPD--CWMNWLR 353
                     DLS N  SG +   +    N S ++  L LS NNFSG I    C      
Sbjct: 347 V--------LDLSFNEFSGELPESLT---NLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           L+ L L +N FTG +P ++   S L+SL+L  N LSG IP+S  + S L  L L  N L 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
           G IP  +      L+ L L  N   G+ P  L     L  + +++N L+G IP+ I  L 
Sbjct: 456 GEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
            +AI                                              + +S N FSG
Sbjct: 515 NLAI----------------------------------------------LKLSNNSFSG 528

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFL 593
            IP E+ + + L  L+L+ NL  G IP  +       S  ++AN ++G+    + N    
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMK 584

Query: 594 NHLNLSNN--NLVGKIPSS-TQLQSFGASSFAGNDLCG 628
              + + N     G       +L +    +       G
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  278 bits (714), Expect = 6e-83
 Identities = 136/503 (27%), Positives = 213/503 (42%), Gaps = 74/503 (14%)

Query: 118 CVANELESLRLGSSQI---FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYL 174
           C  +++ S+ L S  +   F  +++ L     L SL LSN+ ++GS+       ++L  L
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSL 105

Query: 175 DLSNNKLNGTV-SEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF-QLTVLELRSCHLGP 232
           DLS N L+G V +     + + L F   + N+L F    +       L VL+L +  +  
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 233 RFPLWLQSQ---RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNP 289
              +         EL  L IS  +IS  +      ++    +L++S N    GIP   + 
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE---FLDVSSNNFSTGIPFLGD- 221

Query: 290 SMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM 349
               +           D+S N LSG     I         ++ L +S N F G IP   +
Sbjct: 222 -CSALQH--------LDISGNKLSGDFSRAIST----CTELKLLNISSNQFVGPIPPLPL 268

Query: 350 NWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408
               L+ L+L  N FTG +P  + G   +L  L+L  N   G +P  F + S LE L L 
Sbjct: 269 K--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326

Query: 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAF-LQILDVASNSLSGTIPR 467
            N   G +P     +   LK+L+L  N+F G+ P  L  L+  L  LD++SN+ SG I  
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVS 527
            +                                                 N ++ + + 
Sbjct: 387 NLCQNP--------------------------------------------KNTLQELYLQ 402

Query: 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM 587
            N F+G+IP  ++N   L SL+LS N L+G IP ++G +  +  L L  N L G+IPQ +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

Query: 588 SNLSFLNHLNLSNNNLVGKIPSS 610
             +  L  L L  N+L G+IPS 
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSG 485

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  139 bits (352), Expect = 3e-34
 Identities = 56/253 (22%), Positives = 106/253 (41%), Gaps = 32/253 (12%)

Query: 376 SSLLSLNLRNNILSGI---IPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNL 432
             + S++L +  L+     + +S  + + LE L L  + + GS+  +     + L  L+L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK--CSASLTSLDL 107

Query: 433 RSNKFHGDFP--IQLCGLAFLQILDVASNSLSGTIPR-CINNLSAMAITDSYDQAVILYS 489
             N   G       L   + L+ L+V+SN+L           L+++ + D         +
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS------AN 161

Query: 490 SLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLN 549
           S+                             ++ + +S N  SG++   V+    L+ L+
Sbjct: 162 SISGANVVGWVLSDG-------------CGELKHLAISGNKISGDVD--VSRCVNLEFLD 206

Query: 550 LSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS 609
           +S N  +  IP  +G   +++ LD+S N+LSG   +++S  + L  LN+S+N  VG IP 
Sbjct: 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 610 S--TQLQSFGASS 620
                LQ    + 
Sbjct: 266 LPLKSLQYLSLAE 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  232 bits (593), Expect = 2e-70
 Identities = 88/335 (26%), Positives = 137/335 (40%), Gaps = 58/335 (17%)

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSG--DIPDCWMNWLRLRALNL-GHN 362
           D  N    G +    C  +  +  +  L LS  N      IP    N   L  L + G N
Sbjct: 32  DCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 363 NFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGE 422
           N  G +P +I  L+ L  L + +  +SG IP       +L  LD   N L G++P  I  
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS- 146

Query: 423 RFSILKILNLRSNKFHGDFPIQLCGLAFL-QILDVASNSLSGTIPRCINNLSAMAITDSY 481
               L  +    N+  G  P      + L   + ++ N L+G IP    NL+        
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-------- 198

Query: 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTN 541
                                                  +  +D+S+N+  G+  V   +
Sbjct: 199 ---------------------------------------LAFVDLSRNMLEGDASVLFGS 219

Query: 542 LQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601
            +  Q ++L+ N L   +   +G+ +++  LDL  N++ G +PQ ++ L FL+ LN+S N
Sbjct: 220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 602 NLVGKIPSSTQLQSFGASSFAGND-LCGDPLSNCT 635
           NL G+IP    LQ F  S++A N  LCG PL  CT
Sbjct: 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  147 bits (374), Expect = 1e-39
 Identities = 75/327 (22%), Positives = 122/327 (37%), Gaps = 49/327 (14%)

Query: 148 NSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTV---SEI-HFVNLTKLAFFRANG 203
            + D  N    G +  +  Q   +  LDLS   L       S + +   L  L     N 
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN- 87

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
                           L          GP  P  +    +L+ L I+ T +S  IP    
Sbjct: 88  ---------------NLV---------GP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 264 NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQG 323
             I     L+ S N + G +P       P I++  +L+        N +SG+I       
Sbjct: 123 Q-IKTLVTLDFSYNALSGTLP-------PSISSLPNLV--GITFDGNRISGAIPDSYG-- 170

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
            +FS     + +S+N  +G IP  + N L L  ++L  N   G   +  G+  +   ++L
Sbjct: 171 -SFSKLFTSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
             N L+  +        +L  LDL  N + G++P  +  +   L  LN+  N   G+ P 
Sbjct: 229 AKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIP- 285

Query: 444 QLCGLAFLQILDVASNS-LSGT-IPRC 468
           Q   L    +   A+N  L G+ +P C
Sbjct: 286 QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  142 bits (361), Expect = 7e-38
 Identities = 63/328 (19%), Positives = 114/328 (34%), Gaps = 71/328 (21%)

Query: 123 LESLRLGSSQIFG--HLTNQLRRFKRLNSLDLSNT-ILDGSIPFSLGQISNLEYLDLSNN 179
           + +L L    +     + + L     LN L +     L G IP ++ +++ L YL +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 180 KLNGTV-SEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL 238
            ++G +   +    +  L     + N+L   +                        P  +
Sbjct: 112 NVSGAIPDFLS--QIKTLVTLDFSYNALSGTL------------------------PPSI 145

Query: 239 QSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
            S   L  +     RIS  IP  + +    +  + IS N++ G IP              
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP------------- 192

Query: 299 DLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALN 358
                           +  +L         N+ F+ LS+N   GD    + +    + ++
Sbjct: 193 ----------------TFANL---------NLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 359 LGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418
           L  N+    L   +G   +L  L+LRNN + G +P        L  L++  N L G IP 
Sbjct: 228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLC 446
             G       +    +NK     P+  C
Sbjct: 287 --GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  137 bits (348), Expect = 4e-36
 Identities = 72/316 (22%), Positives = 116/316 (36%), Gaps = 72/316 (22%)

Query: 244 LNDLDISSTRIS--AKIPRGFWNSIY-QYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
           +N+LD+S   +     IP    N  Y  + Y+    N + G IP       P I   + L
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIP-------PAIAKLTQL 103

Query: 301 LGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALN 358
                 +++  +SG+I       +  S    +  L  S N  SG +P    +   L  + 
Sbjct: 104 H--YLYITHTNVSGAI------PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 359 LGHNNFTGSLPMSIGTLSSLL-SLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP 417
              N  +G++P S G+ S L  S+ +  N L+G IP +F N + L  +DL  N L G   
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214

Query: 418 SWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477
              G      + ++L  N    D   ++     L  LD+ +N + GT+P+ +  L  +  
Sbjct: 215 VLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL-- 270

Query: 478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV 537
                                                        S++VS N   GEIP 
Sbjct: 271 --------------------------------------------HSLNVSFNNLCGEIPQ 286

Query: 538 EVTNLQGLQSLNLSHN 553
              NLQ       ++N
Sbjct: 287 G-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (334), Expect = 3e-34
 Identities = 76/417 (18%), Positives = 125/417 (29%), Gaps = 141/417 (33%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
                + G +         +  LDLS   L       +                    SS
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP--YPIP-------------------SS 71

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           L   NL  +  LY+   + L G IP +  KL +L    +  T +S  I + L        
Sbjct: 72  LA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS------- 122

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
                                 + K L +LD S   L G++P S+  + NL  +    N+
Sbjct: 123 ----------------------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           ++G + +  + + +KL                                            
Sbjct: 161 ISGAIPD-SYGSFSKL-------------------------------------------- 175

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
                 + IS  R++ KIP  F N      ++++S N + G                   
Sbjct: 176 ---FTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNMLEGDASV--------------- 215

Query: 301 LGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLG 360
                                       N + + L+KN+ + D+         L  L+L 
Sbjct: 216 --------------LFGSDK--------NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR 252

Query: 361 HNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP 417
           +N   G+LP  +  L  L SLN+  N L G IP    N    +V     N+ +   P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  120 bits (304), Expect = 3e-30
 Identities = 48/227 (21%), Positives = 84/227 (37%), Gaps = 55/227 (24%)

Query: 392 IPTSFKNFSSL----EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI--QL 445
           I     N ++L       D      +G +     + +  +  L+L        +PI   L
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYR-VNNLDLSGLNLPKPYPIPSSL 72

Query: 446 CGLAFLQILDVAS-NSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDAS 504
             L +L  L +   N+L G IP  I  L+                               
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------------- 101

Query: 505 LVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIG 564
                          L   + ++    SG IP  ++ ++ L +L+ S+N L+G +P +I 
Sbjct: 102 --------------QL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146

Query: 565 VMRSIESLDLSANQLSGQIPQSMSNLSFL-NHLNLSNNNLVGKIPSS 610
            + ++  +    N++SG IP S  + S L   + +S N L GKIP +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 83.0 bits (206), Expect = 2e-17
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 13/123 (10%)

Query: 523 SIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR--IPDNIGVMRSIESLDLS-ANQL 579
           + D     + G +    T    + +L+LS   L     IP ++  +  +  L +   N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 580 SGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS----TQLQSFGASSFAGNDLCGD-P--LS 632
            G IP +++ L+ L++L +++ N+ G IP        L +     F+ N L G  P  +S
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL---DFSYNALSGTLPPSIS 146

Query: 633 NCT 635
           +  
Sbjct: 147 SLP 149

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.9 bits (146), Expect = 8e-10
 Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 17/116 (14%)

Query: 534 EIPVEVTNLQGLQS----LNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQ--IPQSM 587
           +I  ++ N   L S     +  +    G + D       + +LDLS   L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 588 SNLSFLNHLNLSN-NNLVGKIPSS----TQLQSFGASSFAGNDLCG---DPLSNCT 635
           +NL +LN L +   NNLVG IP +    TQL           ++ G   D LS   
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL---YITHTNVSGAIPDFLSQIK 125

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  227 bits (581), Expect = 6e-65
 Identities = 111/621 (17%), Positives = 201/621 (32%), Gaps = 95/621 (15%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQG-NVS 59
           L  N  Q    +      +L  LDLS N L+ST LG   ++ +L+ L + +N++Q     
Sbjct: 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
            L +   +S+K+L LS N ++    P  F  + +L    +   +L   ++E L +  A  
Sbjct: 164 ELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN- 221

Query: 120 ANELESLRLGSSQI--FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS 177
              + +L L +SQ+    + T    ++  L  LDLS   L+     S   +  LEY  L 
Sbjct: 222 -TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280

Query: 178 NNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLW 237
            N +   +       L  + +     +     I+        L  ++             
Sbjct: 281 YNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLA-----SLPKID----------DFS 324

Query: 238 LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTP 297
            Q  + L  L++    I       F                            +  +   
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTG--------------------------LINLKY- 357

Query: 298 SDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRAL 357
                    LSN+  S              + +  L L+KN  S    D +     L  L
Sbjct: 358 -------LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVL 410

Query: 358 NLGHNNFTGSLP-MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
           +LG N     L       L ++  + L  N    +   SF    SL+ L L    L    
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL---- 466

Query: 417 PSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMA 476
                              K     P     L  L ILD+++N+++      +  L  + 
Sbjct: 467 -------------------KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL- 506

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIP 536
                 + + L  +  +               G  + +   L+ +  +++  N F     
Sbjct: 507 ------EILDLQHNNLARLWKHAN-------PGGPIYFLKGLSHLHILNLESNGFDEIPV 553

Query: 537 VEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMS-NLSFLNH 595
               +L  L+ ++L  N L            S++SL+L  N ++    +        L  
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 596 LNLSNNNLVGKIPSSTQLQSF 616
           L++  N       S     ++
Sbjct: 614 LDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  201 bits (514), Expect = 1e-55
 Identities = 113/621 (18%), Positives = 197/621 (31%), Gaps = 97/621 (15%)

Query: 18  TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSEN 77
            S +  D S  +L        +   ++  L++  N+L+  + +      + +  L +  N
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPT---NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFN 59

Query: 78  DELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHL 137
             +    P    KL  L   +++                    NEL  L   S + F   
Sbjct: 60  -TISKLEPELCQKLPMLKVLNLQH-------------------NELSQL---SDKTFAFC 96

Query: 138 TNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLA 197
           TN       L  L L +  +         +  NL  LDLS+N L+        V L  L 
Sbjct: 97  TN-------LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQ 148

Query: 198 FFRANGNSL--IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRIS 255
               + N +  +     +      L  LEL S  +    P    +   L  L +++ ++ 
Sbjct: 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 256 AKIPRGFWNSIYQYF--YLNISGNQIYGGIPK-FDNPSMPLITTPSDLLGPIFDLSNNAL 312
             +       +       L++S +Q+       F       +T          DLS N L
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM--------LDLSYNNL 260

Query: 313 SGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSL---- 368
           +                +E+  L  NN              +R LNL  +    S+    
Sbjct: 261 NVVGNDSFAW----LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316

Query: 369 -----PMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS---WI 420
                  S   L  L  LN+ +N + GI    F    +L+ L L  +       +   ++
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 421 GERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP-RCINNLSAMAITD 479
               S L ILNL  NK           L  L++LD+  N +   +  +    L  +    
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI---- 432

Query: 480 SYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG--EIPV 537
                + L  +   +     F                 +  ++ + + +         P 
Sbjct: 433 ---FEIYLSYNKYLQLTRNSFAL---------------VPSLQRLMLRRVALKNVDSSPS 474

Query: 538 EVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS--------GQIPQSMSN 589
               L+ L  L+LS+N +     D +  +  +E LDL  N L+        G     +  
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG 534

Query: 590 LSFLNHLNLSNNNLVGKIPSS 610
           LS L+ LNL +N         
Sbjct: 535 LSHLHILNLESNGFDEIPVEV 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  181 bits (461), Expect = 2e-48
 Identities = 93/483 (19%), Positives = 173/483 (35%), Gaps = 36/483 (7%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTV---LGWLSKVNDLEFLSVYSNRLQG- 56
           LS NQ +   P     +  L  L L++ +L  ++   L        +  LS+ +++L   
Sbjct: 178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 57  NVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
           + ++      T++  L LS N  L      SF  L +L  F + +  +    S  L    
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296

Query: 117 A----CVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLE 172
                 +        +  + +        +  K L  L++ +  + G        + NL+
Sbjct: 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK 356

Query: 173 YLDLSNNKLN-GTVSEIHFVNL--TKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCH 229
           YL LSN+  +  T++   FV+L  + L       N +    +  +     L VL+L    
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 230 LGPRFPLW-LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDN 288
           +G        +    + ++ +S  +   ++ R  +  +     L +    +   +    +
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKN-VDSSPS 474

Query: 289 PSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFS------- 341
           P  PL     +L   I DLSNN ++     ++         +E L L  NN +       
Sbjct: 475 PFQPL----RNLT--ILDLSNNNIANINDDMLEG----LEKLEILDLQHNNLARLWKHAN 524

Query: 342 -GDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFS 400
            G           L  LNL  N F          L  L  ++L  N L+ +  + F N  
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584

Query: 401 SLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS 460
           SL+ L+L +N +        G  F  L  L++R N F            F+  ++    +
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI---AWFVNWINETHTN 641

Query: 461 LSG 463
           +  
Sbjct: 642 IPE 644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  177 bits (451), Expect = 3e-47
 Identities = 92/500 (18%), Positives = 162/500 (32%), Gaps = 53/500 (10%)

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
           +  L L  +Q+         R+ +L SLD+    +    P    ++  L+ L+L +N+L+
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR 242
             +S+  F   T L       NS+    N  +V    L  L+L    L            
Sbjct: 87  Q-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 243 ELNDLDISSTRISAKIPRGFWNSIYQYF-YLNISGNQIYGGIPKFDNPSMPLITTPSDLL 301
            L +L +S+ +I A                L +S NQI    P   +    L        
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG------ 199

Query: 302 GPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPD--CWMNWLRLRALNL 359
                L+N  L  S+   +C     ++ I  L LS +  S         + W  L  L+L
Sbjct: 200 ---LFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSW 419
            +NN       S   L  L    L  N +  +   S     ++  L+L  +         
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS--------- 306

Query: 420 IGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITD 479
                      ++               L  L+ L++  N + G        L  +    
Sbjct: 307 -------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL---- 355

Query: 480 SYDQAVILYSSLRS--EGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV 537
              + + L +S  S     +E F              +   + +  ++++KN  S     
Sbjct: 356 ---KYLSLSNSFTSLRTLTNETFV-------------SLAHSPLHILNLTKNKISKIESD 399

Query: 538 EVTNLQGLQSLNLSHNLLTGRIPDN-IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHL 596
             + L  L+ L+L  N +   +       + +I  + LS N+       S + +  L  L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 597 NLSNNNLVGKIPSSTQLQSF 616
            L    L     S +  Q  
Sbjct: 460 MLRRVALKNVDSSPSPFQPL 479

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  166 bits (422), Expect = 2e-43
 Identities = 85/478 (17%), Positives = 151/478 (31%), Gaps = 86/478 (17%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
              +  L+L++  L      +  + S L  LD+  N ++  +       L  L       
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQH 82

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
           N L    +  +     LT L L S  +          Q+ L  LD+S   +S+       
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 264 NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQG 323
                                      +  +            LSNN +       +   
Sbjct: 143 Q--------------------------LENLQE--------LLLSNNKIQALKSEELDIF 168

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIG---TLSSLLS 380
            N S  ++ L+LS N      P C+    RL  L L +     SL   +      +S+ +
Sbjct: 169 ANSS--LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226

Query: 381 LNLRNNILSGIIPTSFKN--FSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH 438
           L+L N+ LS    T+F    +++L +LDL  N L              L+   L  N   
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQ 285

Query: 439 GDFPIQLCGLAFLQILDVASNSLSGTIPRC-INNLSAMAITDSYDQAVILYSSLRSEGQS 497
             F   L GL  ++ L++  +    +I    +  +   +                     
Sbjct: 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW------------------ 327

Query: 498 EIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG 557
                               L  +  +++  N   G      T L  L+ L+LS++  + 
Sbjct: 328 --------------------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 558 RIPDNIG----VMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSST 611
           R   N          +  L+L+ N++S     + S L  L  L+L  N +  ++    
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  146 bits (371), Expect = 7e-37
 Identities = 64/325 (19%), Positives = 119/325 (36%), Gaps = 35/325 (10%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
           +L++N L            NF+    +  L +  N  S   P+       L+ LNL HN 
Sbjct: 31  NLTHNQLRRLP------AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGER 423
            +     +    ++L  L+L +N +  I    F    +L  LDL  N L  +      + 
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 424 FSILKILNLRSNKFHG--DFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY 481
            + L+ L L +NK        + +   + L+ L+++SN +    P C + +  +      
Sbjct: 145 EN-LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL------ 197

Query: 482 DQAVILYS-SLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVT 540
              + L +  L      ++  + +              ++ R++ +S +  S        
Sbjct: 198 -FGLFLNNVQLGPSLTEKLCLELAN------------TSI-RNLSLSNSQLSTTSNTTFL 243

Query: 541 NLQG--LQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNL 598
            L+   L  L+LS+N L     D+   +  +E   L  N +      S+  L  + +LNL
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 599 SNNNLVGKIPSSTQLQSFGASSFAG 623
             +     I S   L      SF  
Sbjct: 304 KRSFTKQSI-SLASLPKIDDFSFQW 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  143 bits (362), Expect = 8e-36
 Identities = 77/490 (15%), Positives = 143/490 (29%), Gaps = 127/490 (25%)

Query: 146 RLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS 205
                D S+  L   +P  L   +N+  L+L++N+L   +   +F   +           
Sbjct: 5   SHEVADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRR-LPAANFTRYS----------- 49

Query: 206 LIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNS 265
                        QLT L++    +    P   Q    L  L++    +S    + F   
Sbjct: 50  -------------QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF- 95

Query: 266 IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGEN 325
                                           ++L      L +N++     +   +   
Sbjct: 96  -------------------------------CTNLT--ELHLMSNSIQKIKNNPFVK--- 119

Query: 326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLP--MSIGTLSSLLSLNL 383
              N+  L LS N  S       +    L+ L L +N         + I   SSL  L L
Sbjct: 120 -QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSI--LKILNLRSNKFHGDF 441
            +N +    P  F     L  L L   +L  S+   +    +   ++ L+L +++     
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238

Query: 442 PIQLCGLAF--LQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEI 499
                GL +  L +LD++ N+L+         L                           
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLP-------------------------- 272

Query: 500 FEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRI 559
                               L     +  N         +  L  ++ LNL  +     I
Sbjct: 273 -------------------QL-EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 560 PDN---------IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610
                          ++ +E L++  N + G      + L  L +L+LSN+    +  ++
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 611 TQLQSFGASS 620
               S   S 
Sbjct: 373 ETFVSLAHSP 382

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  219 bits (561), Expect = 1e-62
 Identities = 112/617 (18%), Positives = 192/617 (31%), Gaps = 96/617 (15%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N  +        +   L+ LDLS  E+ +   G    ++ L  L +  N +Q  ++ 
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LAL 93

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
                L+S+++L   E + L        G L  L   ++    +     ++   FS    
Sbjct: 94  GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNL-- 148

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRL----NSLDLSNTILDGSIPFSLGQISNLEYLDL 176
             LE L L S++I       LR   ++     SLDLS   ++   P +  +I  L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTL 207

Query: 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 236
            NN  +  V +     L  L   R        + N        L  L             
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL------------- 254

Query: 237 WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITT 296
                  + +  ++            +N +      ++    I        N     +  
Sbjct: 255 ---CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL-- 309

Query: 297 PSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRA 356
                    +L N          +             +L+  +  G      ++   L  
Sbjct: 310 ---------ELVNCKFGQFPTLKLKS---------LKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 357 LNLGHN--NFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414
           L+L  N  +F G    S    +SL  L+L  N +   + ++F     LE LD   + L  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 415 SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA 474
                +      L  L++        F     GL+ L++L +A NS              
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-------- 462

Query: 475 MAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
                                  +IF +               L  +  +D+S+      
Sbjct: 463 ----------------------PDIFTE---------------LRNLTFLDLSQCQLEQL 485

Query: 535 IPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL-SFL 593
            P    +L  LQ LN+SHN            + S++ LD S N +     Q + +  S L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 594 NHLNLSNNNLVGKIPSS 610
             LNL+ N+        
Sbjct: 546 AFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  178 bits (454), Expect = 4e-48
 Identities = 91/479 (18%), Positives = 167/479 (34%), Gaps = 36/479 (7%)

Query: 1   LSGNQFQG-QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGN-- 57
           ++ N  Q  ++P    NLT+L++LDLSSN++ S     L  ++ +  L++  + L  N  
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD-LSLNPM 189

Query: 58  -VSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDI---SEILG 113
                G      + +L L  N +    + T    L  L    +   +   +         
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

Query: 114 IFSACVANELESLRLGS-SQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLE 172
                    +E  RL         + +       ++S  L +  ++    FS       +
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQ 307

Query: 173 YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG- 231
           +L+L N K       +   +L +L F    G +   +++        L  L+L    L  
Sbjct: 308 HLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLSF 361

Query: 232 -PRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPS 290
                        L  LD+S   +   +   F     Q  +L+   + +          S
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLS 419

Query: 291 MPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMN 350
           +  +           D+S+     +   +        +++E LK++ N+F  +       
Sbjct: 420 LRNLI--------YLDISHTHTRVAFNGIFNG----LSSLEVLKMAGNSFQENFLPDIFT 467

Query: 351 WL-RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE 409
            L  L  L+L         P +  +LSSL  LN+ +N    +    +K  +SL+VLD   
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 410 NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQ--LCGLAFLQILDVASNSLSGTIP 466
           N ++ S    +    S L  LNL  N F      Q  L  +   + L V    +    P
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  157 bits (398), Expect = 1e-40
 Identities = 86/503 (17%), Positives = 161/503 (32%), Gaps = 58/503 (11%)

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
            ++L L  + +    +     F  L  LDLS   +      +   +S+L  L L+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHL-GPRFPLWLQSQ 241
             ++   F  L+ L    A   +L    N        L  L +    +   + P +  + 
Sbjct: 90  S-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 242 RELNDLDISSTRISAKIP---RGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
             L  LD+SS +I +      R           L++S N +   I       + L     
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHK--- 204

Query: 299 DLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR-LRAL 357
                   L NN  S ++     QG      +  L L +    G++     + L  L  L
Sbjct: 205 ------LTLRNNFDSLNVMKTCIQGLA-GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 358 NLGHNN------FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE 411
            +          +   +      L+++ S +L +  +  +    F      + L+L   +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCK 315

Query: 412 LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS--GTIPRCI 469
             G  P+   +    L   + +              L  L+ LD++ N LS  G   +  
Sbjct: 316 F-GQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 470 NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKN 529
              ++           + Y  L   G   +  +               L  +  +D   +
Sbjct: 370 FGTTS-----------LKYLDLSFNGVITMSSNF------------LGLEQLEHLDFQHS 406

Query: 530 IFSGEIPVEV-TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQI-PQSM 587
                    V  +L+ L  L++SH             + S+E L ++ N       P   
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 588 SNLSFLNHLNLSNNNLVGKIPSS 610
           + L  L  L+LS   L    P++
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  149 bits (378), Expect = 4e-38
 Identities = 84/481 (17%), Positives = 154/481 (32%), Gaps = 55/481 (11%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
                +LDLS   L     +S      L+ LDLS  ++        + +L+ L+     G
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTG 85

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI-SAKIPRGF 262
           N +       +     L  L     +L       +   + L +L+++   I S K+P  F
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 263 WNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ 322
            N      +L++S N+I   I   D   +  +   +  L    DLS N ++         
Sbjct: 146 SNLTNLE-HLDLSSNKIQS-IYCTDLRVLHQMPLLNLSL----DLSLNPMNFIQP----- 194

Query: 323 GENFSN-NIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTGSLPM---SIGTLSS 377
              F    +  L L  N  S ++    +  L  L    L    F     +       L  
Sbjct: 195 -GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253

Query: 378 LLSLNLRNNILSGI------IPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILN 431
           L +L +    L+ +      I   F   +++    L    +               + L 
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLE 310

Query: 432 LRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSL 491
           L + KF      Q   L    +  +   S  G       +L ++   D       L  + 
Sbjct: 311 LVNCKFG-----QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD-------LSRN- 357

Query: 492 RSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLS 551
                        L  KG   + +     ++ +D+S N     +      L+ L+ L+  
Sbjct: 358 ------------GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 404

Query: 552 HNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610
           H+ L      ++   +R++  LD+S            + LS L  L ++ N+        
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464

Query: 611 T 611
            
Sbjct: 465 I 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  128 bits (324), Expect = 4e-31
 Identities = 55/330 (16%), Positives = 103/330 (31%), Gaps = 33/330 (10%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
           +N   + + L LS N         + ++  L+ L+L           +  +LS L +L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHG-DFP 442
             N +  +   +F   SSL+ L   E  L       IG     LK LN+  N       P
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH-LKTLKELNVAHNLIQSFKLP 142

Query: 443 IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED 502
                L  L+ LD++SN +       +  L  M + +     + L  +  +  Q   F++
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS---LDLSLNPMNFIQPGAFKE 199

Query: 503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV-TNLQGLQSLNLSHNLLTGRI-- 559
             L                  + +  N  S  +       L GL+   L           
Sbjct: 200 IRL----------------HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 560 -PDNIGVMRSIESLDLSANQLS------GQIPQSMSNLSFLNHLNLSNNNLVGKIPSS-- 610
              +   +  + +L +   +L+        I    + L+ ++  +L +  +      S  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 611 TQLQSFGASSFAGNDLCGDPLSNCTEKNVL 640
              Q     +          L +       
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 5e-28
 Identities = 71/390 (18%), Positives = 131/390 (33%), Gaps = 40/390 (10%)

Query: 244 LNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK-FDNPSMPLITTPSDLLG 302
             +LD+S   +       F++       L++S  +I       + +  +  ++T      
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPEL-QVLDLSRCEIQTIEDGAYQS--LSHLST------ 80

Query: 303 PIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHN 362
               L+ N +            +  ++++ L   + N +        +   L+ LN+ HN
Sbjct: 81  --LILTGNPIQSLALGAF----SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 363 NFTG-SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV----LDLGENELVGSIP 417
                 LP     L++L  L+L +N +  I  T  +    + +    LDL  N +    P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 418 SWIGERFSILKILNLRSNKFHGDFPIQLC-GLAFLQILDVASNSLSGTIPRCINNLSAMA 476
               E    L  L LR+N    +       GLA L++  +              + SA+ 
Sbjct: 195 GAFKE--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVL---------VEYNSILNLVRSIDVS 527
              +        + L       I     L               V+  S     + +++ 
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELV 312

Query: 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS--GQIPQ 585
              F          L+ L+ L  + N            + S+E LDLS N LS  G   Q
Sbjct: 313 NCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 586 SMSNLSFLNHLNLSNNNLVGKIPSSTQLQS 615
           S    + L +L+LS N ++    +   L+ 
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  210 bits (536), Expect = 5e-59
 Identities = 88/626 (14%), Positives = 177/626 (28%), Gaps = 113/626 (18%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNEL----NSTVLGWLSKVNDLEFLSVYSNRLQG 56
           L G    G++P  +G LT L+ L L S+             +S     E         Q 
Sbjct: 88  LEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK 147

Query: 57  N-VSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIF 115
             V     E+ + + +  ++ + +    I  S     K T        ++     ++ + 
Sbjct: 148 TFVDYDPREDFSDLIKDCINSDPQQKS-IKKSSRITLKDTQIGQLSNNITFVSKAVMRLT 206

Query: 116 SACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD 175
                  L    +G+S        +        + +        +       + +L  ++
Sbjct: 207 K------LRQFYMGNSPFVAENICEA-----WENENSEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 176 LSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFP 235
           + N      +       L ++       N                  +         +  
Sbjct: 256 VYNCPNLTKLPT-FLKALPEMQLINVACNRG----------------ISGEQLKDDWQAL 298

Query: 236 LWLQSQRELNDLDISSTRISA-KIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLI 294
                  ++  + I    +    +       + +   L    NQ+ G +P F +     +
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPAFGS--EIKL 355

Query: 295 TTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPD--CWMNWL 352
            +         +L+ N ++    +       F+  +E L  + N     IP+     +  
Sbjct: 356 AS--------LNLAYNQITEIPANFC----GFTEQVENLSFAHNKLKY-IPNIFDAKSVS 402

Query: 353 RLRALNLGHNNFTG-------SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL 405
            + A++  +N            L  +     ++ S+NL NN +S      F   S L  +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 406 DLGENELVGSIPSWIGERFSI-------LKILNLRSNKFHGDFP-IQLCGLAFLQILDVA 457
           +L  N L   IP    +  +        L  ++LR NK        +   L +L  +D++
Sbjct: 463 NLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 458 SNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI 517
            NS S   P    N S                +L+                         
Sbjct: 522 YNSFSK-FPTQPLNSS----------------TLKG------------------------ 540

Query: 518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSAN 577
             +    D   N    E P  +T    L  L +  N +   + + I    +I  LD+  N
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDN 597

Query: 578 QLSGQIPQSMSNLSFLNHLNLSNNNL 603
                    +          L  +  
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  199 bits (508), Expect = 4e-55
 Identities = 85/645 (13%), Positives = 187/645 (28%), Gaps = 106/645 (16%)

Query: 6   FQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLEN 65
            QG       N    K LD+   +   +    L+    +  LS+      G V    +  
Sbjct: 49  QQGFGTQPGANWNFNKELDMWGAQPGVS----LNSNGRVTGLSLEGFGASGRVPD-AIGQ 103

Query: 66  LTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELES 125
           LT ++ L L  + E   +       +    S   +           +        ++L  
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 126 LRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTV 185
             + S      +    R   +   +   +  +   +  ++ +++ L    + N+      
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 186 SEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELN 245
                                                             L   + ++L 
Sbjct: 223 ------------------------------ICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 246 DLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIF 305
           D+++ +     K+P      + +   +N++ N+   G                D    + 
Sbjct: 253 DVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQ------------LKDDWQALA 299

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNF-SGDIPDCWMNWLRLRALNLGHNNF 364
           D                       I+ + +  NN  +  +        +L  L   +N  
Sbjct: 300 DAPV-----------------GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL 342

Query: 365 TGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG-ER 423
            G LP + G+   L SLNL  N ++ I          +E L    N+L   IP+    + 
Sbjct: 343 EGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKS 400

Query: 424 FSILKILNLRSNKFHG-------DFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMA 476
            S++  ++   N+                     +  +++++N +S       +  S + 
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL- 459

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIP 536
                  ++ L  ++ +E      +D +   K           L+ SID+  N  +    
Sbjct: 460 ------SSINLMGNMLTEIPKNSLKDENENFKN--------TYLLTSIDLRFNKLTKLSD 505

Query: 537 -VEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESL------DLSANQLSGQIPQSMSN 589
               T L  L  ++LS+N  +   P       +++        D   N+   + P+ ++ 
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 590 LSFLNHLNLSNNNLVGKIPSS--TQLQSFGASSFAGNDLCGDPLS 632
              L  L + +N++   +       +          N      LS
Sbjct: 565 CPSLTQLQIGSNDIRK-VNEKITPNISVL---DIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 4e-20
 Identities = 32/261 (12%), Positives = 67/261 (25%), Gaps = 31/261 (11%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           L+ +    N    S         +  + N   ++       S  +   +  L L      
Sbjct: 35  LKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGAS 94

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGD----FPIQLCGLAFLQILDVASNSLSGTIPRCI 469
           G +P  IG + + L++L L S+    +     P  +      +           T     
Sbjct: 95  GRVPDAIG-QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYD 153

Query: 470 NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKN 529
                  +      +     S++                      + I      I    N
Sbjct: 154 PREDFSDLIKDCINSDPQQKSIKKS--------------------SRITLKDTQIGQLSN 193

Query: 530 IFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSN 589
             +  +   V  L  L+   + ++                E+ +    Q          N
Sbjct: 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAW-----ENENSEYAQQYKTEDLKWDN 247

Query: 590 LSFLNHLNLSNNNLVGKIPSS 610
           L  L  + + N   + K+P+ 
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTF 268

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  193 bits (492), Expect = 6e-52
 Identities = 79/618 (12%), Positives = 176/618 (28%), Gaps = 100/618 (16%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L+G   +G++P  +G LT LK L   ++    +   +  +    +      +R++ +   
Sbjct: 330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKK 389

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           + L+    +    L ++            K  +++    +   L+  I+ I         
Sbjct: 390 MFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT- 448

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
            +L+ +   +S                   +        +   S   + +L  ++L N  
Sbjct: 449 -KLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
               + +    +L +L       N              +             R      +
Sbjct: 503 NMTQLPDF-LYDLPELQSLNIACN--------------RGISAAQLKADWT-RLADDEDT 546

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
             ++    +    +           + +   L+   N++   +  F       +T     
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEAFGT--NVKLTD---- 599

Query: 301 LGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW--MNWLRLRALN 358
                 L  N +   I    C     ++ +E L  S N     IP+ +   +   + +++
Sbjct: 600 ----LKLDYNQIE-EIPEDFCAF---TDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVD 650

Query: 359 LGHNNFTG-----SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
             +N         S  M      +  ++ L  N +       F   S +  + L  N + 
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM- 709

Query: 414 GSIPSWIGERFSI-------LKILNLRSNKFHG-DFPIQLCGLAFLQILDVASNSLSGTI 465
            SIP    +           L  ++LR NK        +   L +L  +DV+ N  S + 
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SF 768

Query: 466 PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSID 525
           P    N S +                                            +    D
Sbjct: 769 PTQPLNSSQL----------------------------------------KAFGIRHQRD 788

Query: 526 VSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQL-SGQIP 584
              N    + P  +T    L  L +  N +   + + +     +  LD++ N   S  + 
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVT 845

Query: 585 QSMSNLSFLNHLNLSNNN 602
                +    ++ L +  
Sbjct: 846 SVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (432), Expect = 3e-44
 Identities = 76/634 (11%), Positives = 182/634 (28%), Gaps = 131/634 (20%)

Query: 4   NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL 63
           + +  Q    L N   +  L L+       V   + ++ +L+ LS  ++    +    G 
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 64  ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANEL 123
           E L +       ++               +L    +    +++   E+  I         
Sbjct: 369 EEL-TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR-NPEMKPIKK------- 419

Query: 124 ESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNG 183
                          +     K     +L+N I    I  ++ +++ L+ +  +N+    
Sbjct: 420 ---------------DSRISLKDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANSPFTY 462

Query: 184 TVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRE 243
               +                                               L   + ++
Sbjct: 463 DNIAVD------------------------------WEDANSDYAKQYENEELSWSNLKD 492

Query: 244 LNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSM--PLITTPSDLL 301
           L D+++ +     ++P   ++ + +   LNI+ N+         + +       T   + 
Sbjct: 493 LTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 302 GPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359
             IF +  N L            +      +  L    N       + +   ++L  L L
Sbjct: 552 --IFYMGYNNLEE-----FPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKL 602

Query: 360 GHNNFTGSLPMSIGT-LSSLLSLNLRNNILSGIIPT-SFKNFSSLEVLDLGENELVGSIP 417
            +N     +P         +  L   +N L  I    + K+   +  +D   N++ GS  
Sbjct: 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI-GSEG 660

Query: 418 SWIGERFSI-----LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNL 472
             I              + L  N+            + +  + +++N ++ +IP      
Sbjct: 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKP 719

Query: 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS 532
                 +                                        L+ +ID+  N  +
Sbjct: 720 KDGNYKN--------------------------------------TYLLTTIDLRFNKLT 741

Query: 533 GEIPVE--VTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDL------SANQLSGQIP 584
             +  +   T L  L ++++S+N  +   P        +++  +        N++  Q P
Sbjct: 742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 585 QSMSNLSFLNHLNLSNNNLVGKIPSS--TQLQSF 616
             ++    L  L + +N++  K+      QL   
Sbjct: 800 TGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (291), Expect = 7e-27
 Identities = 33/273 (12%), Positives = 85/273 (31%), Gaps = 19/273 (6%)

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
            N   + +     + +     +  L+L      G +P +    + L+VL  G +    S 
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 417 PSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMA 476
             +  E  +       +         + L     L + D+  ++++      +  +   +
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE--MKPIKKDS 421

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL-----VRSIDVSKNIF 531
                D  +   ++  +     I     L +  +    +              +      
Sbjct: 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQI--IYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 532 SGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG---------Q 582
                +  +NL+ L  + L +     ++PD +  +  ++SL+++ N+            +
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539

Query: 583 IPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQS 615
           +         +    +  NNL    P+S  LQ 
Sbjct: 540 LADDEDTGPKIQIFYMGYNNLEE-FPASASLQK 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  189 bits (482), Expect = 9e-52
 Identities = 102/613 (16%), Positives = 184/613 (30%), Gaps = 103/613 (16%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            S N       +    L +L +LDL+  ++           + L+ L + +N L   ++ 
Sbjct: 40  FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAE 98

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L    ++K L+  +   +             L S  +                     
Sbjct: 99  TALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGS------------------- 138

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLE--YLDLSN 178
           N + S++L                  L  LD  N  +       +  +       L+L+ 
Sbjct: 139 NHISSIKLPK---GFPTEK-------LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 179 NKLNGTVSEI-HFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG--PRFP 235
           N + G             L F       +IFK   N      L +               
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN-STIQSLWLGTFEDMDDEDISPAV 247

Query: 236 LWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLIT 295
                +  +  +++            F         L+++   +           +  + 
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHC-FSGLQELDLTATHLSELPSGLVG--LSTLK 304

Query: 296 TPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLR 353
                      LS N              + SN  ++  L +  N    ++    +  L 
Sbjct: 305 K--------LVLSANKFENLC------QISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 354 -LRALNLGHNNFTGS--LPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410
            LR L+L H++   S    + +  LS L SLNL  N    +   +FK    LE+LDL   
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410

Query: 411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN 470
            L         +   +LK+LNL  +           GL  LQ L++  N       +  N
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

Query: 471 NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNI 530
           +L  +               L                                + +S   
Sbjct: 471 SLQTL-------------GRL------------------------------EILVLSFCD 487

Query: 531 FSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL 590
            S       T+L+ +  ++LSHN LT    + +  ++ I  L+L++N +S  +P  +  L
Sbjct: 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPIL 546

Query: 591 SFLNHLNLSNNNL 603
           S    +NL  N L
Sbjct: 547 SQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  177 bits (451), Expect = 1e-47
 Identities = 103/616 (16%), Positives = 193/616 (31%), Gaps = 121/616 (19%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
                   +IP  L    S + L+ S N L +      S++ +L FL +   ++   +  
Sbjct: 19  CENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHE 74

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
              ++   +  L L+ N  L     T+      L                          
Sbjct: 75  DTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQ------------------- 114

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
             + S+         +          L SL L +  +             L+ LD  NN 
Sbjct: 115 TGISSI---DFIPLHNQKT-------LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           ++  +S+    +L +                           L L    +    P    S
Sbjct: 165 IH-YLSKEDMSSLQQA----------------------TNLSLNLNGNDIAGIEPGAFDS 201

Query: 241 QRELNDLDISSTRISAKIPRGFWNS-IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299
                 L+   T+    I +G  NS I   +                             
Sbjct: 202 AV-FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD-------------------- 240

Query: 300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359
                       +S ++F  +C+      ++E + L K+ F     + +  +  L+ L+L
Sbjct: 241 ----------EDISPAVFEGLCE-----MSVESINLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSW 419
              + +  LP  +  LS+L  L L  N    +   S  NF SL  L +  N     + + 
Sbjct: 286 TATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG 344

Query: 420 IGERFSILKILNLRSNKFH--GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAI 477
             E    L+ L+L  +         +QL  L+ LQ L+++ N               + +
Sbjct: 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV 537
            D      + ++ L+ +     F++               L+L++ +++S ++       
Sbjct: 405 LD------LAFTRLKVKDAQSPFQN---------------LHLLKVLNLSHSLLDISSEQ 443

Query: 538 EVTNLQGLQSLNLSHNLLTGRIPDNIGV---MRSIESLDLSANQLSGQIPQSMSNLSFLN 594
               L  LQ LNL  N               +  +E L LS   LS     + ++L  +N
Sbjct: 444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503

Query: 595 HLNLSNNNLVGKIPSS 610
           H++LS+N L      +
Sbjct: 504 HVDLSHNRLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  164 bits (418), Expect = 3e-43
 Identities = 81/459 (17%), Positives = 148/459 (32%), Gaps = 32/459 (6%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N        +      LK LD  +N ++      +S +     LS+  N        
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195

Query: 61  LGLENLTSIKRLYLSENDELGGKIP-TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
            G  +    + L       L           +  L   +               +F    
Sbjct: 196 PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP---AVFEGLC 252

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
              +ES+ L     F   +N    F  L  LDL+ T L   +P  L  +S L+ L LS N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSAN 311

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF-QLTVLELRSCHLG--PRFPL 236
           K    + +I   N   L      GN+   ++    +     L  L+L    +       L
Sbjct: 312 KFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 237 WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITT 296
            L++   L  L++S       +    +    Q   L+++  ++     +    ++ L+  
Sbjct: 371 QLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 297 PSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW---MNWLR 353
                    +LS++ L  S   L          ++ L L  N+F               R
Sbjct: 430 --------LNLSHSLLDISSEQLFDG----LPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           L  L L   + +     +  +L  +  ++L +N L+     +  +   +  L+L  N + 
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQ 452
             +PS +    S  + +NLR N          C   +  
Sbjct: 537 IILPSLLP-ILSQQRTINLRQNPLDCT-----CSNIYFL 569

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (335), Expect = 1e-32
 Identities = 68/317 (21%), Positives = 112/317 (35%), Gaps = 21/317 (6%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
           + S N L             FS   N+ FL L++        D + +  RL  L L  N 
Sbjct: 39  EFSFNVLPTIQNT------TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGER 423
                  ++    +L  L      +S I      N  +LE L LG N +           
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 424 FSILKILNLRSNKFHGDFPIQLCGLAFLQI--LDVASNSLSGTIPRCINNLSAMAITDSY 481
              LK+L+ ++N  H      +  L       L++  N ++G  P   ++    ++    
Sbjct: 153 EK-LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

Query: 482 DQAVILYSSLRSEGQSEI-------FEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
            Q   L    +    S I       FED         V        V SI++ K+ F   
Sbjct: 212 TQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 535 IPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLN 594
                    GLQ L+L+   L+  +P  +  + +++ L LSAN+       S SN   L 
Sbjct: 270 SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 595 HLNLSNNNLVGKIPSST 611
           HL++  N    ++ +  
Sbjct: 329 HLSIKGNTKRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  118 bits (297), Expect = 8e-28
 Identities = 55/357 (15%), Positives = 113/357 (31%), Gaps = 31/357 (8%)

Query: 271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNI 330
            L  S N +   I       +  +T          DL+   +               + +
Sbjct: 37  CLEFSFNVL-PTIQNTTFSRLINLTF--------LDLTRCQIYWIHEDTFQS----QHRL 83

Query: 331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSG 390
           + L L+ N               L+ L       +    + +    +L SL L +N +S 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 391 IIPTSFKNFSSLEVLDLGENELVGSIPSWIGE-RFSILKILNLRSNKFHGDFPIQLCGLA 449
           I          L+VLD   N +       +   + +    LNL  N             A
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSA 202

Query: 450 FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG 509
             Q L+         I + + N +  ++                   +       + ++ 
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT----FEDMDDEDISPAVFEGLCEMSVES 258

Query: 510 VLVEYNSILNL----------VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRI 559
           + ++ +   N+          ++ +D++    S E+P  +  L  L+ L LS N      
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 560 PDNIGVMRSIESLDLSANQLSGQI-PQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQS 615
             +     S+  L +  N    ++    + NL  L  L+LS++++      + QL++
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 3e-17
 Identities = 40/283 (14%), Positives = 76/283 (26%), Gaps = 76/283 (26%)

Query: 355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414
           +  N  +      +P ++   +S   L    N+L  I  T+F    +L  LDL   ++  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 415 SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA 474
                                               L  L + +N L       ++    
Sbjct: 72  IHED-------------------------TFQSQHRLDTLVLTANPLIFMAETALSGPK- 105

Query: 475 MAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
                                                        L + +   +   S  
Sbjct: 106 --------------------------------------------AL-KHLFFIQTGISSI 120

Query: 535 IPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLN 594
             + + N + L+SL L  N ++            ++ LD   N +     + MS+L    
Sbjct: 121 DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180

Query: 595 H--LNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCGDPLSNCT 635
           +  LNL+ N++ G  P +     F + +F G            
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  177 bits (450), Expect = 2e-47
 Identities = 111/609 (18%), Positives = 181/609 (29%), Gaps = 96/609 (15%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N  +        N + L++LDLS  E+ +        ++ L  L +  N +Q   S 
Sbjct: 39  LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSP 97

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
                LTS++ L   E   L        G+L  L   ++    +     ++   FS    
Sbjct: 98  GSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHS--CKLPAYFSNL-- 152

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLN----SLDLSNTILDGSIPFSLGQISNLEYLDL 176
             L  + L  + I     N L+  +       SLD+S   +   I     Q   L  L L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTL 211

Query: 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 236
             N  +  + +    NL  L   R        + N     P  +  L             
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL------------- 258

Query: 237 WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITT 296
                  +++  ++ T   +     F         ++++G  I             L   
Sbjct: 259 ---CDVTIDEFRLTYTNDFSDDIVKFHCLANVS-AMSLAGVSI-----------KYLEDV 303

Query: 297 PSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRA 356
           P         +    L                 ++ L L+ N  S       +    L  
Sbjct: 304 PKHFKWQSLSIIRCQLKQFPT-------LDLPFLKSLTLTMNKGSISFKKVALP--SLSY 354

Query: 357 LNLGHNNFT--GSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414
           L+L  N  +  G    S    +SL  L+L  N    I+  +F     L+ LD   + L  
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKR 413

Query: 415 SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA 474
                       L  L++       DF     GL  L  L +A NS              
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-------- 465

Query: 475 MAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
                                 S +F +                  +  +D+SK      
Sbjct: 466 ----------------------SNVFAN---------------TTNLTFLDLSKCQLEQI 488

Query: 535 IPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLN 594
                  L  LQ LN+SHN L      +   + S+ +LD S N++             L 
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548

Query: 595 HLNLSNNNL 603
             NL+NN++
Sbjct: 549 FFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  162 bits (413), Expect = 1e-42
 Identities = 104/614 (16%), Positives = 193/614 (31%), Gaps = 95/614 (15%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
               +   ++P  +   +S K +DLS N L        S  ++L++L +    ++  +  
Sbjct: 18  CMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IED 73

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
                L  +  L L+ N  +    P SF  L  L +                        
Sbjct: 74  KAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVAVE------------------- 113

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNN 179
            +L SL    S   G L         L  L+++ N I    +P     ++NL ++DLS N
Sbjct: 114 TKLASL---ESFPIGQLIT-------LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
            +   ++      L +                     P     L++    +         
Sbjct: 164 YIQT-ITVNDLQFLREN--------------------PQVNLSLDMSLNPID-FIQDQAF 201

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299
              +L++L +     S+ I +    ++       +   + +      +     ++    D
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE-FKDERNLEIFEPSIMEGLCD 260

Query: 300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359
           +    F L+      + F       +   N+  + L+  +      +      + ++L++
Sbjct: 261 VTIDEFRLTYT----NDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSI 314

Query: 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP-S 418
                          L  L SL L  N  S  I        SL  LDL  N L  S   S
Sbjct: 315 IRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR-CINNLSAMAI 477
           +     + L+ L+L  N           GL  LQ LD   ++L          +L  +  
Sbjct: 370 YSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428

Query: 478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV 537
            D      I Y++ + +    IF                 L  + ++ ++ N F      
Sbjct: 429 LD------ISYTNTKID-FDGIFLG---------------LTSLNTLKMAGNSFKDNTLS 466

Query: 538 EV-TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHL 596
            V  N   L  L+LS   L          +  ++ L++S N L        + L  L+ L
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526

Query: 597 NLSNNNLVGKIPSS 610
           + S N +       
Sbjct: 527 DCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (399), Expect = 8e-41
 Identities = 77/477 (16%), Positives = 156/477 (32%), Gaps = 44/477 (9%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVL-GWLSKVNDLEFLSVYSNRLQGNVS 59
               +        +G L +LK L+++ N ++S  L  + S + +L  + +  N +Q  ++
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-IT 169

Query: 60  SLGLENLTSIK----RLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIF 115
              L+ L         L +S N      I     +  KL   ++R    S +I +     
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPI--DFIQDQAFQGIKLHELTLRGNFNSSNIMK--TCL 225

Query: 116 SACVANELESLRLGSSQIFGHLTN-QLRRFKRL-----NSLDLSNTILDGSIPFSLGQIS 169
                  +  L LG  +   +L   +    + L     +   L+ T            ++
Sbjct: 226 QNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285

Query: 170 NLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCH 229
           N+  + L+   +              L+  R           P       L  L L    
Sbjct: 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF------LKSLTLTMNK 339

Query: 230 LGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQY-FYLNISGNQIYGGIPKFDN 288
                     +   L+ LD+S   +S      + +       +L++S N        F  
Sbjct: 340 G--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 289 PSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPD 346
             +  +           D  ++ L         +   F +   + +L +S  N   D   
Sbjct: 398 --LEELQH--------LDFQHSTLKRVT-----EFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 347 CWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL 405
            ++    L  L +  N+F  +   ++    ++L  L+L    L  I    F     L++L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502

Query: 406 DLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS 462
           ++  N L+    S   + +S L  L+   N+      I       L   ++ +NS++
Sbjct: 503 NMSHNNLLFLDSSHYNQLYS-LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (284), Expect = 3e-26
 Identities = 54/322 (16%), Positives = 104/322 (32%), Gaps = 31/322 (9%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
           ++  ++ + + LS N         + N+  L+ L+L           +   L  L +L L
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHG-DFP 442
             N +    P SF   +SLE L   E +L       IG+  + LK LN+  N  H    P
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT-LKKLNVAHNFIHSCKLP 146

Query: 443 IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED 502
                L  L  +D++ N +       +  L         + ++ +  +     Q + F+ 
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV---NLSLDMSLNPIDFIQDQAFQG 203

Query: 503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV-TNLQGLQSLNLSHNLLTGRI-- 559
             L                  + +  N  S  I      NL GL    L           
Sbjct: 204 IKL----------------HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 560 ----PDNIGVMR--SIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQL 613
               P  +  +   +I+   L+              L+ ++ ++L+  ++   +    + 
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKH 306

Query: 614 QSFGASSFAGNDLCGDPLSNCT 635
             + + S     L   P  +  
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLP 328

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  155 bits (394), Expect = 2e-39
 Identities = 109/606 (17%), Positives = 201/606 (33%), Gaps = 118/606 (19%)

Query: 9   QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTS 68
           Q+P     L + + L LS N + +        +  L+ L + S      +      NL +
Sbjct: 18  QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN 74

Query: 69  IKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRL 128
           ++ L L  + ++    P +F  L  L    + F  LS  +                    
Sbjct: 75  LRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAV-------------------- 113

Query: 129 GSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSE 187
                F +L         L  LDLS N I    +  S G++++L+ +D S+N++   V E
Sbjct: 114 LKDGYFRNLKA-------LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCE 165

Query: 188 IHFVNLT--KLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELN 245
                L    L+FF    NSL  +++ +W                             L 
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNP------------------FRNMVLE 207

Query: 246 DLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIF 305
            LD+S    +  I   F N+I +    ++       G     +               I 
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN--------------IK 253

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT 365
           D   N  +G             +++  L LS           +     L+ LNL +N   
Sbjct: 254 DPDQNTFAGLA----------RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 366 GSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFS 425
                +   L +L  LNL  N+L  +  ++F     +  +DL +N +   I     +   
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI-AIIQDQTFKFLE 362

Query: 426 ILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG--TIPRCINNLSAMAITDSYDQ 483
            L+ L+LR N         +  +  +  + ++ N L     I    N +           
Sbjct: 363 KLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIH---------- 407

Query: 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG-EIPVEVTNL 542
             +  + L +                        +  ++ + +++N FS        +  
Sbjct: 408 --LSENRLENLDILYFLLR---------------VPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 543 QGLQSLNLSHNLLTGRIPDNIGV-----MRSIESLDLSANQLSGQIPQSMSNLSFLNHLN 597
             L+ L L  N+L       +       +  ++ L L+ N L+   P   S+L+ L  L+
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 598 LSNNNL 603
           L++N L
Sbjct: 511 LNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  144 bits (366), Expect = 5e-36
 Identities = 105/528 (19%), Positives = 172/528 (32%), Gaps = 80/528 (15%)

Query: 1   LSGNQFQGQIPSR-LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQ-GNV 58
           L        I      NL +L+ LDL S+++          +  L  L +Y   L    +
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 59  SSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
                 NL ++ RL LS+N      +  SFGKL  L S      ++   + E        
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCE--HELEPL 171

Query: 119 VANELESLRLGSSQI-------FGHLTNQLRRFKRLNSLDLSNTILDGSIP--------- 162
               L    L ++ +       +G   N  R    L  LD+S       I          
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFR-NMVLEILDVSGNGWTVDITGNFSNAISK 230

Query: 163 -----------------------------FSLGQISNLEYLDLSNNKLNGTVSEIHFVNL 193
                                        F+    S++ +LDLS+  +  +++   F  L
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETL 289

Query: 194 TKLAFFRANGNSLIFKINPNWVPPFQ-LTVLELRSCHLGPRFPLWLQSQRELNDLDISST 252
             L       N  I KI          L VL L    LG  +        ++  +D+   
Sbjct: 290 KDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348

Query: 253 RISAKIPRGFWNSIYQYFYLNISGNQI-----YGGIPKFDNPSMPLITTPS-DLLGPIFD 306
            I+  I    +  + +   L++  N +        IP        L+T P  +L   +  
Sbjct: 349 HIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

Query: 307 LSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNN 363
           LS N L       +          +++ L L++N FS    D   +    L  L LG N 
Sbjct: 408 LSENRLEN-----LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 364 FTGSLPMSI-----GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418
              +    +       LS L  L L +N L+ + P  F + ++L  L L  N L   +  
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSH 521

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
                 + L+IL++  N+              L +LD+  N       
Sbjct: 522 ND--LPANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (268), Expect = 5e-24
 Identities = 63/372 (16%), Positives = 122/372 (32%), Gaps = 41/372 (11%)

Query: 271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNI 330
            L +S N I   +     P +  +           +L +     +I     +      N+
Sbjct: 28  RLLLSFNYI-RTVTASSFPFLEQLQL--------LELGSQYTPLTIDKEAFRN---LPNL 75

Query: 331 EFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFTGSL--PMSIGTLSSLLSLNLRNNI 387
             L L  +     +       L  L  L L     + ++        L +L  L+L  N 
Sbjct: 76  RILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 388 LSGI-IPTSFKNFSSLEVLDLGENELVGSIP-SWIGERFSILKILNLRSNKFHGDFPIQL 445
           +  + +  SF   +SL+ +D   N++           +   L   +L +N  +    +  
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 446 CGLA------FLQILDVASNSLSGTIPR-CINNLSAMAITDSYDQAVILYSSLRSEGQSE 498
                      L+ILDV+ N  +  I     N +S            I+ +        +
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254

Query: 499 IFEDASLVMKGVLVE-----YNSILNL----------VRSIDVSKNIFSGEIPVEVTNLQ 543
             ++    +    V      +  + +L          ++ ++++ N  +         L 
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLD 314

Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
            LQ LNLS+NLL      N   +  +  +DL  N ++    Q+   L  L  L+L +N L
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 604 VGKIPSSTQLQS 615
              I     +  
Sbjct: 375 T-TIHFIPSIPD 385

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 40/269 (14%), Positives = 73/269 (27%), Gaps = 35/269 (13%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNS-TVLGWLSKVN--------------DLE 45
           L  N            L  L+ LDL  N L +   +  +  +                  
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404

Query: 46  FLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLS 105
            + +  NRL+       L  +  ++ L L++N         +  +   L    +    L 
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 106 QDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSN----TILDGSI 161
                 L        + L+ L L  + +             L  L L++     +    +
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524

Query: 162 PFSL---------------GQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
           P +L                   +L  LD+++NK         F+N          G   
Sbjct: 525 PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPA 584

Query: 207 -IFKINPNWVPPFQLTVLELRSCHLGPRF 234
            I+ + P+      L  L    C      
Sbjct: 585 DIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 4e-04
 Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 4/66 (6%)

Query: 546 QSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG 605
           +        LT ++P  +    + E L LS N +      S   L  L  L L +     
Sbjct: 7   RIAFYRFCNLT-QVPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 606 KIPSST 611
            I    
Sbjct: 63  TIDKEA 68

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (360), Expect = 7e-36
 Identities = 96/481 (19%), Positives = 167/481 (34%), Gaps = 51/481 (10%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS  + Q        +L+ L  L L+ N + S  LG  S ++ L+ L      L  ++ +
Sbjct: 59  LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLEN 117

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             + +L ++K L ++ N     K+P  F  L  L    +                     
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS------------------- 158

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
           N+++S+     ++   +           SLDLS   ++  I     +   L  L L NN 
Sbjct: 159 NKIQSIYCTDLRVLHQMPLL------NLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNF 211

Query: 181 LNGTVSEIHFVNLTKLAFFR------ANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRF 234
            +  V +     L  L   R       N  +L             LT+ E R  +L    
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 235 PLWLQSQRELNDL---DISSTRISAKIPRGFWNSIYQYFYLNISGNQI----YGGIPKFD 287
              +     L ++    + S  I       +         +N    Q        + +  
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331

Query: 288 NPSMPLITTPSDLLGP---IFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSG 342
             S       S++  P     DLS N LS       C  ++     ++++L LS N    
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLS----FKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 343 DIPDCWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSS 401
            +   ++   +L  L+  H+N       S+  +L +L+ L++ +          F   SS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 402 LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSL 461
           LEVL +  N    +    I      L  L+L   +     P     L+ LQ+L++ASN L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 462 S 462
            
Sbjct: 507 K 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  127 bits (322), Expect = 5e-31
 Identities = 106/595 (17%), Positives = 190/595 (31%), Gaps = 107/595 (17%)

Query: 9   QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTS 68
           +IP  L    S K LDLS N L            +L+ L +    +Q  +     ++L+ 
Sbjct: 21  KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 69  IKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRL 128
           +  L L+ N  +      +F  L  L                            L SL  
Sbjct: 78  LSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE-------------------TNLASL-- 115

Query: 129 GSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSE 187
             +   GHL         L  L+++ N I    +P     ++NLE+LDLS+NK+  ++  
Sbjct: 116 -ENFPIGHLKT-------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

Query: 188 IHFVNLTKLAFFRAN---GNSLIFKINPNWVPPFQLTVLELRSCHLGPRFP---LWLQSQ 241
                L ++     +     + +  I P      +L  L LR+           +   + 
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAG 226

Query: 242 RELNDLDISS-------TRISAKIPRGFWNSIYQYF---YLNISGNQIYGGIPKFDNPSM 291
            E++ L +          +       G  N   + F   YL+   + I        N S 
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286

Query: 292 PLITTP--SDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM 349
             + +     +    ++     L                +++ L  + N       +  +
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 346

Query: 350 NWLRLRALNLGHNNFT--GSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407
               L  L+L  N  +  G    S    +SL  L+L  N +   + ++F     LE LD 
Sbjct: 347 P--SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 403

Query: 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
             + L       +      L  L++        F     GL+ L++L +A NS       
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL- 462

Query: 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVS 527
                                         +IF +               L  +  +D+S
Sbjct: 463 -----------------------------PDIFTE---------------LRNLTFLDLS 478

Query: 528 KNIFSGEIPVEV-TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLS 580
           +     ++      +L  LQ LN++ N L   +PD I   + S++ + L  N   
Sbjct: 479 QCQLE-QLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (266), Expect = 4e-24
 Identities = 91/500 (18%), Positives = 162/500 (32%), Gaps = 66/500 (13%)

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
            ++L L  + +    +     F  L  LDLS   +      +   +S+L  L L+ N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGP-RFPLWLQSQ 241
            +++   F  L+ L    A   +L    N        L  L +    +   + P +  + 
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 242 RELNDLDISS---TRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
             L  LD+SS     I     R           L++S N +   I       + L     
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHK--- 204

Query: 299 DLLGPIFDLSNNALSGSIFHLICQG-----------ENFSNNIEFLKLSKNNFSGDIPDC 347
                   L NN  S ++     QG             F N     K  K+   G + + 
Sbjct: 205 ------LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG-LCNL 257

Query: 348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407
            +   RL  L+   ++           L+++ S +L +  +  +   S+      + L+L
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNC----LTNVSSFSLVSVTIERVKDFSY--NFGWQHLEL 311

Query: 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS--GTI 465
              +  G  P+    +   LK L   SNK    F      L  L+ LD++ N LS  G  
Sbjct: 312 VNCKF-GQFPTL---KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCC 365

Query: 466 PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSID 525
            +     +++       + + L  +      S       L                  +D
Sbjct: 366 SQSDFGTTSL-------KYLDLSFNGVITMSSNFLGLEQL----------------EHLD 402

Query: 526 VSKNIFSGEIPVEV-TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP 584
              +         V  +L+ L  L++SH             + S+E L ++ N       
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 585 QSM-SNLSFLNHLNLSNNNL 603
             + + L  L  L+LS   L
Sbjct: 463 PDIFTELRNLTFLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.2 bits (245), Expect = 2e-21
 Identities = 82/414 (19%), Positives = 141/414 (34%), Gaps = 43/414 (10%)

Query: 217 PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
           PF    L+L    L         S  EL  LD+S   I   I  G + S+     L ++G
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85

Query: 277 NQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS 336
           N I   +       +  +                 L+      I         ++ L ++
Sbjct: 86  NPIQS-LALGAFSGLSSLQK--------LVAVETNLASLENFPIGH----LKTLKELNVA 132

Query: 337 KNNF-SGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSL----LSLNLRNNILSGI 391
            N   S  +P+ + N   L  L+L  N         +  L  +    LSL+L  N ++ I
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 392 IPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQ---LCGL 448
            P +FK    L  L L  N    ++     +  + L++  L   +F  +  ++      L
Sbjct: 193 QPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 449 AFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVIL-YSSLRSEGQSEIFEDASLVM 507
             L  L +    L+        +     I D ++    +   SL S     + + +    
Sbjct: 252 EGLCNLTIEEFRLAY------LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 508 KGVLVEYNSILNLVRSI--------DVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLT--G 557
              L   N       ++          + N        EV +L  L+ L+LS N L+  G
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-NAFSEV-DLPSLEFLDLSRNGLSFKG 363

Query: 558 RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSST 611
               +     S++ LDLS N +   +  +   L  L HL+  ++NL      S 
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.5 bits (204), Expect = 2e-16
 Identities = 48/276 (17%), Positives = 84/276 (30%), Gaps = 58/276 (21%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
            + L+L  N        S  +   L  L+L    +  I   ++++ S L  L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSL-SGTIPRCINNL 472
            S+        S L+ L              +  L  L+ L+VA N + S  +P   +NL
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS 532
           +                                               +  +D+S N   
Sbjct: 149 TN----------------------------------------------LEHLDLSSNKIQ 162

Query: 533 GEIPVEVTNLQGLQ----SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM- 587
                ++  L  +     SL+LS N +   I         +  L L  N  S  + ++  
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 588 SNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAG 623
             L+ L    L       +  +   L+ F  S+  G
Sbjct: 222 QGLAGLEVHRLVLG----EFRNEGNLEKFDKSALEG 253

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 39/192 (20%), Positives = 67/192 (34%), Gaps = 8/192 (4%)

Query: 1   LSGNQ--FQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNV 58
           LS N   F+G         TSLKYLDLS N + +    +   +  LE L    + L+   
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMS 412

Query: 59  SSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
                 +L ++  L +S            F  L  L    M      ++      IF+  
Sbjct: 413 EFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTEL 469

Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178
               L  L L   Q+             L  L++++  L         ++++L+ + L  
Sbjct: 470 --RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

Query: 179 NKLNGTVSEIHF 190
           N  + +   I +
Sbjct: 528 NPWDCSCPRIDY 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (333), Expect = 2e-32
 Identities = 105/609 (17%), Positives = 189/609 (31%), Gaps = 115/609 (18%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
                F   IPS L    ++K LDLS N++     G L    +L+ L + S+R+   +  
Sbjct: 12  GRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEG 67

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
               +L S++ L LS+N  L     + FG L  L   ++                     
Sbjct: 68  DAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQ--------------- 111

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP-FSLGQISNLEYLDLSNN 179
                  LG + +F +LTN       L +L + N      I       +++L  L++   
Sbjct: 112 ------TLGVTSLFPNLTN-------LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
            L          ++  +     + +   F +         +  LELR  +L       L 
Sbjct: 159 SLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299
                + +   + R S  +    +N + +     +  +++                    
Sbjct: 218 VDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEV-------------------- 256

Query: 300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359
                                  G    N  E   +S+           +  + +R L++
Sbjct: 257 ---------------EFDDCTLNGLGDFNPSESDVVSELGK--------VETVTIRRLHI 293

Query: 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL--VGSIP 417
                   L      L  +  + + N+ +  +  +  ++  SLE LDL EN +       
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 418 SWIGERFSILKILNLRSNKFH--GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM 475
           S     +  L+ L L  N           L  L  L  LD++ N+    +P         
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK- 411

Query: 476 AITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEI 535
                     + + +L S G   +                 I   +  +DVS N      
Sbjct: 412 ----------MRFLNLSSTGIRVVKTC--------------IPQTLEVLDVSNNNLD-SF 446

Query: 536 PVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNH 595
            +    L  LQ L +S N L   +PD   +   +  + +S NQL          L+ L  
Sbjct: 447 SL---FLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK 501

Query: 596 LNLSNNNLV 604
           + L  N   
Sbjct: 502 IWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  101 bits (253), Expect = 1e-22
 Identities = 75/503 (14%), Positives = 158/503 (31%), Gaps = 90/503 (17%)

Query: 147 LNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
           + SLDLS   +       L   +NL+ L L ++++N T+    F +L  L     + N L
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL 86

Query: 207 IFKINPNW-VPPFQLTVLELRSCHLGP-RFPLWLQSQRELNDLDISSTRISAKIPRGFWN 264
              ++ +W  P   L  L L               +   L  L I +    ++I R  + 
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 265 SIYQYFYLNISGNQIYGGIPK-FDN-PSMPLITTPSDLLGPIFDLSNNALSG-------- 314
            +     L I    +     +   +   +  +T        + ++  + LS         
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205

Query: 315 ----SIFHLICQGENFSNNIEFLKLSKNNFS----GDIPDCWMNWLRLRALNLGHNNFTG 366
                        +  S+ ++ L    +  +     ++       L L  +        G
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 367 SLPMSIGT-----------LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415
               +                ++  L++    L   + T +     ++ + +  +++   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FL 324

Query: 416 IPSWIGERFSILKILNLRSNKFHGDFPIQ---LCGLAFLQILDVASNSLSGTIPRCINNL 472
           +P    +    L+ L+L  N    ++            LQ L ++ N L  ++ +    L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEIL 383

Query: 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS 532
             +              +L                               S+D+S+N F 
Sbjct: 384 LTL-------------KNL------------------------------TSLDISRNTFH 400

Query: 533 GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
             +P      + ++ LNLS   +   +     + +++E LD+S N L          L  
Sbjct: 401 -PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFS---LFLPR 452

Query: 593 LNHLNLSNNNLVGKIPSSTQLQS 615
           L  L +S N L   +P ++    
Sbjct: 453 LQELYISRNKLK-TLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 67/472 (14%), Positives = 141/472 (29%), Gaps = 71/472 (15%)

Query: 147 LNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
               D  +     SIP  L   + ++ LDLS NK+   +          L       + +
Sbjct: 7   SGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62

Query: 207 ------IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPR 260
                  F    +      L  L+L   HL      W      L  L++           
Sbjct: 63  NTIEGDAFYSLGS------LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

Query: 261 GFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLI 320
             + ++     L I   + +  I + D   +  +           ++   +L        
Sbjct: 117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE--------LEIKALSLRN------ 162

Query: 321 CQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFTGSLPMSIGTLSS 377
            Q ++  +  +I  L L  +  +  + + + + L  +R L L   N        +     
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 378 LLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKF 437
              +       S +   SF     L    L        +     +  ++  + +   ++ 
Sbjct: 222 SSPMKKLAFRGSVLTDESFNELLKLLRYIL-------ELSEVEFDDCTLNGLGDFNPSES 274

Query: 438 HGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQS 497
                +       ++ L +    L   +    + L  +       + + + +S       
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV-------KRITVENSKVFLVPC 327

Query: 498 EIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEI---PVEVTNLQGLQSLNLSHNL 554
              +                L  +  +D+S+N+   E             LQ+L LS N 
Sbjct: 328 SFSQH---------------LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 555 LTGRIPDNIGV---MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
           L   +     +   ++++ SLD+S N     +P S      +  LNLS+  +
Sbjct: 373 LR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGI 422

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 4e-18
 Identities = 61/348 (17%), Positives = 116/348 (33%), Gaps = 32/348 (9%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
           DLS N ++  I        +     N++ L L  +  +    D + +   L  L+L  N+
Sbjct: 32  DLSFNKIT-YI-----GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGI-IPTSFKNFSSLEVLDLGENELVGSIPSWIGE 422
            +       G LSSL  LNL  N    + + + F N ++L+ L +G  E    I      
Sbjct: 86  LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482
             + L  L +++          L  +  +  L +  +  +  +    + LS+        
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS-------- 197

Query: 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNL 542
              + Y  LR    +        V +                D S N    ++   +  L
Sbjct: 198 ---VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILEL 253

Query: 543 QGLQSLNLSHNLLTGRIPDNIGVMR--------SIESLDLSANQLSGQIPQSMSNLSFLN 594
             ++  + + N L    P    V+         +I  L +    L   +    S L  + 
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 595 HLNLSNNNLVGKIPSST--QLQSFGASSFAGNDLCGDPLSNCTEKNVL 640
            + + N+ +   +P S    L+S      + N +  + L N   K   
Sbjct: 314 RITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  115 bits (289), Expect = 2e-27
 Identities = 94/472 (19%), Positives = 167/472 (35%), Gaps = 74/472 (15%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L        +     +L  +  L      + S  +  +  +N+L  ++  +N+L      
Sbjct: 31  LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLT---DI 83

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L+NLT +  + ++ N ++     T    L  LT  ++   +++ DI  +  +      
Sbjct: 84  TPLKNLTKLVDILMNNN-QI--ADITPLANLTNLTGLTLFNNQIT-DIDPLKNL------ 133

Query: 121 NELESLRLGSSQI-----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD 175
             L  L L S+ I        LT+       L  L   N + D      L  ++ LE LD
Sbjct: 134 TNLNRLELSSNTISDISALSGLTS-------LQQLSFGNQVTD---LKPLANLTTLERLD 183

Query: 176 LSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFP 235
           +S+NK++          LT L    A  N +        +    L  L L    L  +  
Sbjct: 184 ISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL--KDI 236

Query: 236 LWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLIT 295
             L S   L DLD+++ +IS   P      +     L +  NQI   I       +  +T
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLT---ELKLGANQI-SNISPLAG--LTALT 290

Query: 296 TPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLR 353
                     +L+ N L              SN  N+ +L L  NN S   P    +  +
Sbjct: 291 N--------LELNENQLEDI--------SPISNLKNLTYLTLYFNNISDISP--VSSLTK 332

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           L+ L   +N  +     S+  L+++  L+  +N +S + P    N + +  L L +    
Sbjct: 333 LQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGD-FPIQLCGLAFLQILDVASNSLSGT 464
            +  ++     + + I N   N       P  +         D+  N  S T
Sbjct: 389 NAPVNY----KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (259), Expect = 2e-23
 Identities = 92/474 (19%), Positives = 169/474 (35%), Gaps = 80/474 (16%)

Query: 146 RLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS 205
            L S  ++       I F+   ++      L    +  TVS+     +T L   R    S
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS 60

Query: 206 LIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNS 265
           +             LT +   +  L    P  L++  +L D+ +++ +I+   P     +
Sbjct: 61  I-----DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTN 113

Query: 266 IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGEN 325
           +     L +  NQI   I    N  +  +           +LS+N +S            
Sbjct: 114 LT---GLTLFNNQI-TDIDPLKN--LTNLNR--------LELSSNTISDI--------SA 151

Query: 326 FSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
            S   +++ L    N  +   P   +    L  L++  N  +      +  L++L SL  
Sbjct: 152 LSGLTSLQQLSFG-NQVTDLKPLANLT--TLERLDISSNKVSD--ISVLAKLTNLESLIA 206

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
            NN +S I P      ++L+ L L  N+L   I +      + L  L+L +N+       
Sbjct: 207 TNNQISDITP--LGILTNLDELSLNGNQLK-DIGTL--ASLTNLTDLDLANNQISN--LA 259

Query: 444 QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA 503
            L GL  L  L + +N +S   P  +  L+A+         + L  +             
Sbjct: 260 PLSGLTKLTELKLGANQISNISP--LAGLTAL-------TNLELNENQ------------ 298

Query: 504 SLVMKGVLVEYNSILNLV--RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561
                  L + + I NL     + +  N  S   PV   +L  LQ L   +N ++     
Sbjct: 299 -------LEDISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VS 347

Query: 562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQS 615
           ++  + +I  L    NQ+S   P  ++NL+ +  L L++        +     S
Sbjct: 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  103 bits (258), Expect = 2e-23
 Identities = 88/478 (18%), Positives = 165/478 (34%), Gaps = 79/478 (16%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  ++   +    +  L +L  ++ S+N+L  T +  L  +  L  + + +N++      
Sbjct: 51  LQADRLGIKSIDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIA---DI 105

Query: 61  LGLENLTSIKRLYLSENDELGGKI--PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
             L NLT++  L L  N     +I        L  L    +    +S DIS + G+    
Sbjct: 106 TPLANLTNLTGLTLFNN-----QITDIDPLKNLTNLNRLELSSNTIS-DISALSGL---- 155

Query: 119 VANELESLRLGSSQI----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYL 174
               L+ L  G+         +LT        L  LD+S+  +  S    L +++NLE L
Sbjct: 156 --TSLQQLSFGNQVTDLKPLANLTT-------LERLDISSNKV--SDISVLAKLTNLESL 204

Query: 175 DLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF----QLTVLELRSCHL 230
             +NN+++          LT L     NGN L        +        LT L+L +  +
Sbjct: 205 IATNNQIS---DITPLGILTNLDELSLNGNQLKD------IGTLASLTNLTDLDLANNQI 255

Query: 231 GPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPS 290
                  L    +L +L + + +IS   P     ++     L ++ NQ+    P  +  +
Sbjct: 256 --SNLAPLSGLTKLTELKLGANQISNISPLAGLTALT---NLELNENQLEDISPISNLKN 310

Query: 291 MPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCW 348
           +  +            L  N +S             S+   ++ L    N  S       
Sbjct: 311 LTYL-----------TLYFNNISDI--------SPVSSLTKLQRLFFYNNKVSD--VSSL 349

Query: 349 MNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408
            N   +  L+ GHN  +   P  +  L+ +  L L +   +        N S    +   
Sbjct: 350 ANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV 407

Query: 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
              L+   P+ I +        ++  N             +    +   + + SGT+ 
Sbjct: 408 TGALI--APATISD-GGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.8 bits (239), Expect = 6e-21
 Identities = 80/463 (17%), Positives = 151/463 (32%), Gaps = 75/463 (16%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
                   L  T +  ++  +   +  +  L      +       +  NLT++ F   + 
Sbjct: 23  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLTQINF---SN 77

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
           N L        +   +L  + + +  +    PL   +   L  L + + +I+   P    
Sbjct: 78  NQLTDITPLKNLT--KLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDPLKNL 133

Query: 264 NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQG 323
            ++     L +S N I   I       +  +              N          +   
Sbjct: 134 TNLN---RLELSSNTI-SDISALSG--LTSLQQ--------LSFGNQ---------VTDL 170

Query: 324 ENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSL 381
           +  +N   +E L +S N  S            L +L   +N  +   P  +G L++L  L
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 382 NLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF 441
           +L  N L  I   +  + ++L  LDL  N++    P       + L  L L +N+     
Sbjct: 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNIS 281

Query: 442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFE 501
           P+   GL  L  L++  N L    P  I+NL  +     Y   +   S + S        
Sbjct: 282 PLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS-------- 329

Query: 502 DASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561
                           L  ++ +    N  S      + NL  +  L+  HN ++   P 
Sbjct: 330 ----------------LTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP- 370

Query: 562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV 604
            +  +  I  L L+    +       +N+S  N +      L+
Sbjct: 371 -LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.6 bits (236), Expect = 1e-20
 Identities = 92/488 (18%), Positives = 167/488 (34%), Gaps = 85/488 (17%)

Query: 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKL 181
           E     LG + +   ++       ++ +L      +       +  ++NL  ++ SNN+L
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 80

Query: 182 NGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF----QLTVLELRSCHLGPRFPLW 237
                     NLTKL     N N +        + P      LT L L +  +       
Sbjct: 81  TDI---TPLKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQI--TDIDP 129

Query: 238 LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTP 297
           L++   LN L++SS  IS         S+     L+         +    N  +  +   
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQ---QLSFGNQVT--DLKPLAN--LTTLER- 181

Query: 298 SDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLR 355
                   D+S+N +S             +   N+E L  + N  S   P   +    L 
Sbjct: 182 -------LDISSNKVSDI--------SVLAKLTNLESLIATNNQISDITPLGILT--NLD 224

Query: 356 ALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415
            L+L  N        ++ +L++L  L+L NN +S + P      + L  L LG N++   
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM 475
            P       + L  L L  N+        +  L  L  L +  N++S   P  +++L+ +
Sbjct: 281 SPL---AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 476 AITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEI 535
                  Q +  Y++  S+                 V   + L  +  +    N  S   
Sbjct: 334 -------QRLFFYNNKVSD-----------------VSSLANLTNINWLSAGHNQISDLT 369

Query: 536 PVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNH 595
           P+   NL  +  L L+    T   P N     SI +   +        P ++S+      
Sbjct: 370 PLA--NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTE 425

Query: 596 LNLSNNNL 603
            +++ N  
Sbjct: 426 PDITWNLP 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.5 bits (189), Expect = 9e-15
 Identities = 71/397 (17%), Positives = 137/397 (34%), Gaps = 92/397 (23%)

Query: 242 RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLL 301
            E     +  T ++  + +   + +     L      I          S+  +   ++L 
Sbjct: 24  AEKMKTVLGKTNVTDTVSQTDLDQVT---TLQADRLGI---------KSIDGVEYLNNLT 71

Query: 302 GPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359
               + SNN L+              N   +  + ++ N  +   P   +    L  L L
Sbjct: 72  --QINFSNNQLTDIT--------PLKNLTKLVDILMNNNQIADITPLANLT--NLTGLTL 119

Query: 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSW 419
            +N  T   P  +  L++L  L L +N +S I        +SL+ L  G N++    P  
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLKPL- 173

Query: 420 IGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITD 479
                + L+ L++ SNK        L  L  L+ L   +N +S   P  +  L+ +    
Sbjct: 174 --ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNL---- 223

Query: 480 SYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV 539
                                                       + ++ N         +
Sbjct: 224 ------------------------------------------DELSLNGNQLKD--IGTL 239

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS 599
            +L  L  L+L++N ++   P  +  +  +  L L ANQ+S   P  ++ L+ L +L L+
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295

Query: 600 NNNLVGKIPSSTQLQSFGASSFAGNDLCG-DPLSNCT 635
            N L   I   + L++    +   N++    P+S+ T
Sbjct: 296 ENQLED-ISPISNLKNLTYLTLYFNNISDISPVSSLT 331

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 35/229 (15%), Positives = 70/229 (30%), Gaps = 63/229 (27%)

Query: 373 GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNL 432
           G L S       +  ++ I        +      LG+  +  ++          +  L  
Sbjct: 1   GPLGSATITQ--DTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQ---TDLDQVTTLQA 53

Query: 433 RSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLR 492
                       +  L  L  ++ ++N L+   P  + NL+ +                 
Sbjct: 54  DRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKL----------------- 92

Query: 493 SEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSH 552
                                          I ++ N  +   P+   NL  L  L L +
Sbjct: 93  -----------------------------VDILMNNNQIADITPLA--NLTNLTGLTLFN 121

Query: 553 NLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601
           N +T    D +  + ++  L+LS+N +S     ++S L+ L  L+  N 
Sbjct: 122 NQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ 166

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (262), Expect = 9e-24
 Identities = 82/451 (18%), Positives = 150/451 (33%), Gaps = 38/451 (8%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           +S N       S + +L+ L+ L +S N +    +       +LE+L +  N+L      
Sbjct: 28  ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV----K 83

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQ------DISEILGI 114
           +      ++K L LS N      I   FG + +L    +  T L +          I  +
Sbjct: 84  ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 115 FSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYL 174
                    E       Q F   +  +          + +  +       L  I  +   
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 175 DLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRF 234
           +  +  L+          L+ L           F      V    +    + +  L  + 
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263

Query: 235 PLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYF----YLNISGNQIYGGIPKFDNPS 290
                     +   +S  ++ + +     + IY+ F      N + +             
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-------MVH 316

Query: 291 MPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFS--GDIPD 346
           M   +  S  L    D SNN L+ ++F       N  +   +E L L  N       I +
Sbjct: 317 MLCPSKISPFL--HLDFSNNLLTDTVFE------NCGHLTELETLILQMNQLKELSKIAE 368

Query: 347 CWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL 405
                  L+ L++  N+ +            SLLSLN+ +NIL+  I         ++VL
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVL 426

Query: 406 DLGENELVGSIPSWIGERFSILKILNLRSNK 436
           DL  N++  SIP  +  +   L+ LN+ SN+
Sbjct: 427 DLHSNKIK-SIPKQVV-KLEALQELNVASNQ 455

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (260), Expect = 2e-23
 Identities = 70/426 (16%), Positives = 143/426 (33%), Gaps = 39/426 (9%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNS-TVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           LS N+    I        +LK+LDLS N  ++  +      ++ L+FL + +  L+    
Sbjct: 76  LSHNKLVK-ISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE---- 128

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
              +  +  +    +                L    + S+     +      +   S   
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 120 ANELESLRLGSSQIFGHLTN------QLRRFKRLNSLDLSNTILDGSIPFSLGQI---SN 170
              LE   +         +       +L+   +L++L L+N     +    + Q+   + 
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 171 LEYLDLSNNKLNG----TVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELR 226
           + Y  +SN KL G       +    +L  L+  +   +   F  +  +     + +    
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 227 SCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKF 286
                    L          LD S+  ++          + +   L +  NQ+       
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQL------- 360

Query: 287 DNPSMPLITTPSDLLGP--IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDI 344
               +  I   +  +      D+S N++S       C     + ++  L +S N  +  I
Sbjct: 361 --KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---TKSLLSLNMSSNILTDTI 415

Query: 345 PDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404
             C     R++ L+L  N    S+P  +  L +L  LN+ +N L  +    F   +SL+ 
Sbjct: 416 FRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472

Query: 405 LDLGEN 410
           + L  N
Sbjct: 473 IWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 92.2 bits (229), Expect = 1e-19
 Identities = 90/544 (16%), Positives = 168/544 (30%), Gaps = 115/544 (21%)

Query: 67  TSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESL 126
                L +S+N  +     +    L KL    +   ++ Q +     +F      ELE L
Sbjct: 21  QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRI-QYLDI--SVFKFNQ--ELEYL 74

Query: 127 RLGSSQI----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFS--LGQISNLEYLDLSNNK 180
            L  +++         N       L  LDLS    D ++P     G +S L++L LS   
Sbjct: 75  DLSHNKLVKISCHPTVN-------LKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTH 126

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           L    S +   +L         G +   K +P       L      S H+          
Sbjct: 127 LE-KSSVLPIAHLNISKVLLVLGETYGEKEDPE-----GLQDFNTESLHI---------- 170

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
                     + +    I      ++      NI           F +    L T P   
Sbjct: 171 -------VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 301 LGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLG 360
                 L+N   + + F  I Q    +  + +  +S     G                  
Sbjct: 224 N---LTLNNIETTWNSFIRILQLVWHTT-VWYFSISNVKLQG------------------ 261

Query: 361 HNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWI 420
                     S  +L +L    + +++        ++ FS++ + +   +     +    
Sbjct: 262 -QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-RMVHMLC 319

Query: 421 GERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDS 480
             + S    L+  +N            L  L+ L +  N L   + +             
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSK------------- 365

Query: 481 YDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV- 539
                           +E+                  +  ++ +D+S+N  S +      
Sbjct: 366 ---------------IAEMTTQ---------------MKSLQQLDISQNSVSYDEKKGDC 395

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS 599
           +  + L SLN+S N+LT  I   +     I+ LDL +N++   IP+ +  L  L  LN++
Sbjct: 396 SWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA 452

Query: 600 NNNL 603
           +N L
Sbjct: 453 SNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 75/486 (15%), Positives = 153/486 (31%), Gaps = 61/486 (12%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            S N     +P  L        L++S N ++      +  ++ L  L +  NR+Q  +  
Sbjct: 7   RSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDI 62

Query: 61  LGLENLTSIKRLYLSENDELGGKIPT-SFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
              +    ++ L LS N     K+   S      L    + F                  
Sbjct: 63  SVFKFNQELEYLDLSHN-----KLVKISCHPTVNLKHLDLSFNAFDA------------- 104

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
                   L   + FG+++        L  L LS T L+ S    +  ++  + L +   
Sbjct: 105 --------LPICKEFGNMSQ-------LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTV--------LELRSCHLG 231
                       +    +       +  F    +        +        LE   C   
Sbjct: 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 232 PRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYF--YLNISGNQIYGGIPKFDNP 289
                 LQ+  +L++L +++   +          ++     Y +IS  ++ G +      
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF---- 265

Query: 290 SMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM 349
                +  S     I  + ++       ++        +N+     + +        C  
Sbjct: 266 RDFDYSGTSLKALSIHQVVSDVFGFPQSYI----YEIFSNMNIKNFTVSGTRMVHMLCPS 321

Query: 350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTS--FKNFSSLEVLDL 407
                  L+  +N  T ++  + G L+ L +L L+ N L  +   +       SL+ LD+
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381

Query: 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
            +N +              L  LN+ SN         L     +++LD+ SN +  +IP+
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPK 438

Query: 468 CINNLS 473
            +  L 
Sbjct: 439 QVVKLE 444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 53/279 (18%), Positives = 99/279 (35%), Gaps = 21/279 (7%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
              LN+  N  +      I +LS L  L + +N +  +  + FK    LE LDL  N+L 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL- 81

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQ--LCGLAFLQILDVASNSLSGTIPRCINN 471
             I          LK L+L  N F    PI      ++ L+ L +++  L  +    I +
Sbjct: 82  VKISC---HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 472 LSAMAITDSYDQAVILY-----------SSLRSEGQSEIFEDASLVMKGVLVEYNSILNL 520
           L+   +     +                 SL     +       L +    V    + N+
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM---RSIESLDLSAN 577
              ++ +K  +   I  ++     L +L L++   T      I  +    ++    +S  
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 578 QLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSF 616
           +L GQ+     + S  +   LS + +V  +    Q   +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (255), Expect = 1e-23
 Identities = 42/286 (14%), Positives = 83/286 (29%), Gaps = 61/286 (21%)

Query: 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN 386
                 L+L         PD       L+ + +        LP ++   + L +L L  N
Sbjct: 80  QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN 137

Query: 387 ILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSI--------LKILNLRSNKFH 438
            L   +P S  + + L  L +     +  +P  +    +         L+ L L      
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 439 GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSE 498
              P  +  L  L+ L + ++ LS  +   I++L  +                       
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL----------------------- 231

Query: 499 IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSH-NLLTG 557
                                    +D+         P        L+ L L   + L  
Sbjct: 232 -----------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL- 267

Query: 558 RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
            +P +I  +  +E LDL       ++P  ++ L     + +  +  
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 5e-23
 Identities = 43/263 (16%), Positives = 87/263 (33%), Gaps = 46/263 (17%)

Query: 350 NWLRLRALNLGHNNFTGSLPMSIGTLSS--LLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407
           N    +           +    +   +    ++L LR+  L    P      S L+ + +
Sbjct: 54  NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
               L+  +P  +  +F+ L+ L L  N      P  +  L  L+ L + +      +P 
Sbjct: 112 DAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

Query: 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVS 527
            + +  A                                      E+  ++NL +S+ + 
Sbjct: 169 PLASTDA------------------------------------SGEHQGLVNL-QSLRLE 191

Query: 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM 587
                  +P  + NLQ L+SL + ++ L+  +   I  +  +E LDL         P   
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIF 249

Query: 588 SNLSFLNHLNLSNNNLVGKIPSS 610
              + L  L L + + +  +P  
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLD 272

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.1 bits (245), Expect = 2e-22
 Identities = 49/378 (12%), Positives = 111/378 (29%), Gaps = 84/378 (22%)

Query: 220 LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI 279
              L  +       +   L   +   + D +    + +       +         +G  +
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGRAL 68

Query: 280 YGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALS---GSIFHLICQGENFSNNIEFLKLS 336
                  ++ + P             +L +  L       F L         +++ + + 
Sbjct: 69  KATADLLEDATQPGRVA--------LELRSVPLPQFPDQAFRLS--------HLQHMTID 112

Query: 337 KNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN---------I 387
                 ++PD    +  L  L L  N    +LP SI +L+ L  L++R           +
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 388 LSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG 447
            S       +   +L+ L L    +  S+P+ I      LK L +R++         +  
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIHH 227

Query: 448 LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVM 507
           L  L+ LD+   +     P      + +           L                    
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPL---------KRLI------------------- 259

Query: 508 KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR 567
              L + +++                 +P+++  L  L+ L+L   +   R+P  I  + 
Sbjct: 260 ---LKDCSNL---------------LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 568 SIESLDLSANQLSGQIPQ 585
           +   + +  +  +     
Sbjct: 302 ANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 56/349 (16%), Positives = 115/349 (32%), Gaps = 51/349 (14%)

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
           ++  E+L    S       + L +++R  + D +         +     +N +    +  
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGR 66

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSL------IFKINPNWVPPFQLTVLELRSCHLGPR 233
            L  T   +                 L       F+++        L  + + +  L   
Sbjct: 67  ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLS-------HLQHMTIDAAGL-ME 118

Query: 234 FPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPL 293
            P  +Q    L  L ++   + A +P    + + +   L+I        +P+        
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRA-LPASIAS-LNRLRELSIRACPELTELPE-------- 168

Query: 294 ITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR 353
                        L++   SG    L         N++ L+L        +P    N   
Sbjct: 169 ------------PLASTDASGEHQGL--------VNLQSLRLEWTGIR-SLPASIANLQN 207

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           L++L + ++  + +L  +I  L  L  L+LR        P  F   + L+ L L +   +
Sbjct: 208 LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS 462
            ++P  I  R + L+ L+LR        P  +  L    I+ V  +  +
Sbjct: 267 LTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 4e-17
 Identities = 54/349 (15%), Positives = 105/349 (30%), Gaps = 65/349 (18%)

Query: 64  ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANEL 123
           + L+  +R Y ++ +                   +     L      +            
Sbjct: 30  DVLSQWQRHYNADRNRW--HSAWRQANSNNPQIETRTGRALKATADLL----EDATQPGR 83

Query: 124 ESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNG 183
            +L L S  +     +Q  R   L  + +    L   +P ++ Q + LE L L+ N L  
Sbjct: 84  VALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA 141

Query: 184 TVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRE 243
             + I   +L +L          + ++      P  L   +             L +   
Sbjct: 142 LPASI--ASLNRLRELSIRACPELTEL------PEPLASTDA------SGEHQGLVN--- 184

Query: 244 LNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGP 303
           L  L +  T I + +P    N +     L I  + +                        
Sbjct: 185 LQSLRLEWTGIRS-LPASIAN-LQNLKSLKIRNSPL------------------------ 218

Query: 304 IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
                 +AL  +I HL          +E L L       + P  +     L+ L L   +
Sbjct: 219 ------SALGPAIHHL--------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
              +LP+ I  L+ L  L+LR  +    +P+      +  ++ +  +  
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 33/267 (12%), Positives = 77/267 (28%), Gaps = 66/267 (24%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
              L    +         +       + +               N ++ ++       L 
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK 69

Query: 414 GSIPSWIGE-RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNL 472
            +    + +        L LRS      FP Q   L+ LQ + + +  L   +P  +   
Sbjct: 70  -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126

Query: 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS 532
           +                                              L  ++ +++N   
Sbjct: 127 A---------------------------------------------GL-ETLTLARNPLR 140

Query: 533 GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIG---------VMRSIESLDLSANQLSGQI 583
             +P  + +L  L+ L++        +P+ +           + +++SL L    +   +
Sbjct: 141 -ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL 198

Query: 584 PQSMSNLSFLNHLNLSNNNLVGKIPSS 610
           P S++NL  L  L + N+ L   +  +
Sbjct: 199 PASIANLQNLKSLKIRNSPLS-ALGPA 224

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 2e-14
 Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 26/218 (11%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNS--TVLGWLSKVNDLEFLSVYSNRLQGNV 58
           L       Q P +   L+ L+++ + +  L      +   +    LE L++  N L+   
Sbjct: 88  LRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG---LETLTLARNPLRALP 143

Query: 59  SSLGLENLTSIKRLYLSENDELG--------GKIPTSFGKLCKLTSFSMRFTKLSQDISE 110
           +S+   +L  ++ L +    EL                  L  L S  + +T +    + 
Sbjct: 144 ASIA--SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 111 ILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISN 170
           I           L+SL++ +S +   L   +    +L  LDL       + P   G  + 
Sbjct: 202 I------ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

Query: 171 LEYLDLSNNKLNGTV-SEIHFVNLTKLAFFRANGNSLI 207
           L+ L L +     T+  +IH   LT+L      G   +
Sbjct: 255 LKRLILKDCSNLLTLPLDIH--RLTQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.9 bits (177), Expect = 1e-13
 Identities = 46/394 (11%), Positives = 96/394 (24%), Gaps = 95/394 (24%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
             G+         L         D +            +  N+ +  +     L+     
Sbjct: 19  FQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALKATADL 74

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           L          L L     L  + P    +L  L   ++                     
Sbjct: 75  LEDATQPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDA------------------- 113

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS-NN 179
             L  L                    L +L L+   L  ++P S+  ++ L  L +    
Sbjct: 114 AGLMEL----PDTMQQFAG-------LETLTLARNPLR-ALPASIASLNRLRELSIRACP 161

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
           +L      +               ++     +   V    L  L L    +    P  + 
Sbjct: 162 ELTELPEPL--------------ASTDASGEHQGLV---NLQSLRLEWTGI-RSLPASIA 203

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299
           + + L  L I ++ +SA +     + + +   L++ G       P               
Sbjct: 204 NLQNLKSLKIRNSPLSA-LGPAIHH-LPKLEELDLRGCTALRNYPP-------------- 247

Query: 300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359
                                         ++ L L   +    +P       +L  L+L
Sbjct: 248 ---------------IFGGRA--------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284

Query: 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIP 393
                   LP  I  L +   + +  ++ + +  
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 7e-11
 Identities = 30/255 (11%), Positives = 64/255 (25%), Gaps = 65/255 (25%)

Query: 366 GSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFS 425
           GS        S   +L  + +            +      D           +      +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS-----N 56

Query: 426 ILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQA 484
             +I              ++         L++ S  L    P     LS +         
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL--------- 106

Query: 485 VILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQG 544
                                                + + +       E+P  +    G
Sbjct: 107 -------------------------------------QHMTIDAAGLM-ELPDTMQQFAG 128

Query: 545 LQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF---------LNH 595
           L++L L+ N L   +P +I  +  +  L + A     ++P+ +++            L  
Sbjct: 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 596 LNLSNNNLVGKIPSS 610
           L L    +   +P+S
Sbjct: 188 LRLEWTGIR-SLPAS 201

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 9/120 (7%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYS-NRLQGNVS 59
           +  +     +   + +L  L+ LDL                  L+ L +   + L     
Sbjct: 213 IRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL----L 267

Query: 60  SL--GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSA 117
           +L   +  LT +++L L     L  ++P+   +L       +     +Q          A
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (260), Expect = 1e-23
 Identities = 66/464 (14%), Positives = 145/464 (31%), Gaps = 37/464 (7%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           ++ +  +  + S   +  ++K LDLS N L+      L+    LE L++ SN L     +
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ET 73

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           L LE+L++++ L L+ N                + +       +S+              
Sbjct: 74  LDLESLSTLRTLDLNNNY------VQELLVGPSIETLHAANNNISRVSCSRG-------- 119

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNN 179
              +++ L +++I            R+  LDL  N I   +          LE+L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
            +     ++ F  L  L     + N L   + P +     +T + LR+  L       L+
Sbjct: 180 FIYDVKGQVVFAKLKTLDL---SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299
             + L   D+          R F++   +   +     +   G  + +     L      
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG----- 289

Query: 300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359
                                 +          L   + + +  +     N  R R ++ 
Sbjct: 290 ------HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDA 343

Query: 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSW 419
               +   +        + ++L  +   L   +    +  + L+         +      
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI--ELQH 401

Query: 420 IGERFSILKILNLRSNKF-HGDFPIQLCGLAFLQILDVASNSLS 462
             E  S L++L     ++       Q      ++  D+  +  +
Sbjct: 402 ATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (254), Expect = 7e-23
 Identities = 69/484 (14%), Positives = 144/484 (29%), Gaps = 75/484 (15%)

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
           N  +  ++  S +   L +  +    +  LDLS   L       L   + LE L+LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           L  T   +   +L+ L     N N +        +    +  L   + ++        Q 
Sbjct: 70  LYET---LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQG 121

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
                ++ +++ +I+  +         +  YL++  N+I                     
Sbjct: 122 ---KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID-------------------- 157

Query: 301 LGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLG 360
                 ++   L+ S           S+ +E L L  N    D+    + + +L+ L+L 
Sbjct: 158 -----TVNFAELAAS-----------SDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLS 199

Query: 361 HNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV-GSIPSW 419
            N     +     + + +  ++LRNN L  +I  + +   +LE  DL  N    G++  +
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

Query: 420 IGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITD 479
                   ++  +                    +    +           + L A+   +
Sbjct: 258 FS---KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 480 SYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV 539
                +    S     + E    A                  R ID  K  +   I    
Sbjct: 315 H--ALLSGQGSETERLECERENQARQ----------------REIDALKEQYRTVIDQVT 356

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS 599
              Q   +L      L  ++ +       ++     A     ++  +    S L  L   
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAI 415

Query: 600 NNNL 603
               
Sbjct: 416 VKRY 419

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.8 bits (246), Expect = 6e-22
 Identities = 60/478 (12%), Positives = 139/478 (29%), Gaps = 86/478 (17%)

Query: 146 RLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS 205
           R     ++++ L  ++        N++ LDLS N L+  +S       TKL     + N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNV 69

Query: 206 LIFKINPNWVPPF----QLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRG 261
           L                 L  L+L + ++       L     +  L  ++  IS ++   
Sbjct: 70  LYE------TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCS 117

Query: 262 FWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLIC 321
                     + ++ N+I   +   D      +           DL  N +       + 
Sbjct: 118 RGQGKKN---IYLANNKI-TMLRDLDEGCRSRVQY--------LDLKLNEIDT-----VN 160

Query: 322 QGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL 379
             E  ++   +E L L  N    D+    + + +L+ L+L  N     +     + + + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 380 SLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV-GSIPSWIGERFSILKILNLRSNKFH 438
            ++LRNN L  +I  + +   +LE  DL  N    G++  +        ++  +      
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS---KNQRVQTVAKQTVK 273

Query: 439 GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSE 498
                         +    +           + L A+   +                   
Sbjct: 274 KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE------------------- 314

Query: 499 IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR 558
                           +++L+        +   +  +  E  N    + ++         
Sbjct: 315 ----------------HALLSG-------QGSETERLECERENQARQREIDALKEQYRTV 351

Query: 559 IPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSF 616
           I       ++  +L+     L  Q+       + L+         +    ++ +    
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPL 409

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 90.7 bits (225), Expect = 3e-19
 Identities = 49/266 (18%), Positives = 97/266 (36%), Gaps = 47/266 (17%)

Query: 344 IPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLE 403
           I +   N  R +   +  ++   +L     +  ++  L+L  N LS I       F+ LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 404 VLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG 463
           +L+L  N L  ++        S L+ L+L +N        +L     ++ L  A+N++S 
Sbjct: 62  LLNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 464 TIPRCINNL-----SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSIL 518
                         +   IT   D      S +                           
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRV--------------------------- 146

Query: 519 NLVRSIDVSKN-IFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSAN 577
              + +D+  N I +        +   L+ LNL +N +   +   +     +++LDLS+N
Sbjct: 147 ---QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSN 201

Query: 578 QLSGQIPQSMSNLSFLNHLNLSNNNL 603
           +L+  +     + + +  ++L NN L
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKL 226

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 37/250 (14%), Positives = 86/250 (34%), Gaps = 59/250 (23%)

Query: 367 SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSI 426
           ++       +      + ++ L   + +  ++  +++ LDL  N L     + +   F+ 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTK 59

Query: 427 LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI 486
           L++LNL SN  +    ++   L+ L+ LD+ +N +   +    +                
Sbjct: 60  LELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELLVGPS---------------- 100

Query: 487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQ 546
                                             + ++  + N  S    V  +  QG +
Sbjct: 101 ----------------------------------IETLHAANNNISR---VSCSRGQGKK 123

Query: 547 SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG-QIPQSMSNLSFLNHLNLSNNNLVG 605
           ++ L++N +T     + G    ++ LDL  N++      +  ++   L HLNL  N +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 606 KIPSSTQLQS 615
            +        
Sbjct: 183 DVKGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.2 bits (190), Expect = 5e-15
 Identities = 50/367 (13%), Positives = 110/367 (29%), Gaps = 79/367 (21%)

Query: 239 QSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
           Q+        ++ + +  +       S +    L++SGN +              +   +
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAA-------DLAPFT 58

Query: 299 DLLGPIFDLSNNALSG--SIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRA 356
            L   + +LS+N L     +  L        + +  L L+ N    ++         +  
Sbjct: 59  KLE--LLNLSSNVLYETLDLESL--------STLRTLDLNNNYVQ-ELLVGP----SIET 103

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
           L+  +NN +    +S        ++ L NN ++ +        S ++ LDL  NE+    
Sbjct: 104 LHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 417 PSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMA 476
            + +      L+ LNL+ N  + D   Q+   A L+ LD++SN L+  +     + + + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGV- 216

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIP 536
                                                          I +  N     I 
Sbjct: 217 ---------------------------------------------TWISLRNNKLV-LIE 230

Query: 537 VEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHL 596
             +   Q L+  +L  N             ++     ++   +     Q+    +     
Sbjct: 231 KALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 597 NLSNNNL 603
           +      
Sbjct: 290 HYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (253), Expect = 1e-23
 Identities = 45/312 (14%), Positives = 105/312 (33%), Gaps = 41/312 (13%)

Query: 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI 387
           N  +  K++ ++    +     +   ++ L+L  N  +      +   + L  LNL +N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 388 LSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG 447
           L   +    ++ S+L  LDL  N +   +          ++ L+  +N       +    
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR---VSCSR 118

Query: 448 LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYS-SLRSEGQSEIFEDASLV 506
               + + +A+N ++          S +       Q + L    + +   +E+       
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRV-------QYLDLKLNEIDTVNFAELAAS---- 167

Query: 507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM 566
                       + +  +++  N    ++  +      L++L+LS N L   +       
Sbjct: 168 -----------SDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSA 213

Query: 567 RSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-- 624
             +  + L  N+L   I +++     L H +L  N            ++    + A    
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 625 -DLCGDPLSNCT 635
             L G     CT
Sbjct: 273 KKLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 51/267 (19%), Positives = 98/267 (36%), Gaps = 49/267 (18%)

Query: 344 IPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLE 403
           I +   N  R +   +  ++   +L     +  ++  L+L  N LS I       F+ LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 404 VLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG 463
           +L+L  N L         E  S L+ L+L +N        +L     ++ L  A+N++S 
Sbjct: 62  LLNLSSNVLY-ETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 464 TIPRCIN------NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI 517
            +            L+   IT   D      S +                          
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRV-------------------------- 146

Query: 518 LNLVRSIDVSKN-IFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSA 576
               + +D+  N I +        +   L+ LNL +N +   +   +     +++LDLS+
Sbjct: 147 ----QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSS 200

Query: 577 NQLSGQIPQSMSNLSFLNHLNLSNNNL 603
           N+L+  +     + + +  ++L NN L
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKL 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 90.8 bits (226), Expect = 4e-20
 Identities = 54/334 (16%), Positives = 108/334 (32%), Gaps = 56/334 (16%)

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
           N  +  ++  S +   L +  +    +  LDLS   L       L   + LE L+LS+N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           L      +   +L+ L     N N               +                 L  
Sbjct: 70  LY---ETLDLESLSTLRTLDLNNN--------------YVQE---------------LLV 97

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
              +  L  ++  IS ++             + ++ N+I   +   D      +      
Sbjct: 98  GPSIETLHAANNNIS-RVSCSRGQGKKN---IYLANNKI-TMLRDLDEGCRSRVQY---- 148

Query: 301 LGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALN 358
                DL  N +       +   E  ++   +E L L  N    D+    + + +L+ L+
Sbjct: 149 ----LDLKLNEIDT-----VNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLD 197

Query: 359 LGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418
           L  N     +     + + +  ++LRNN L  +I  + +   +LE  DL  N        
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQ 452
               +   ++ +  ++ K       + C +  L 
Sbjct: 256 DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.0 bits (211), Expect = 5e-18
 Identities = 50/303 (16%), Positives = 102/303 (33%), Gaps = 47/303 (15%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
            +++++L  ++           +  N++ L LS N  S         + +L  LNL  N 
Sbjct: 16  KVTDSSLKQAL------ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGER 423
                   + +LS+L +L+L NN +            S+E L    N +   +      R
Sbjct: 70  LY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SRVSC---SR 118

Query: 424 FSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG-TIPRCINNLSAMAITDSYD 482
               K + L +NK      +     + +Q LD+  N +          +   +       
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL------- 171

Query: 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNL 542
               L   L+     ++                    L +++D+S N  +  +  E  + 
Sbjct: 172 --EHLN--LQYNFIYDVKGQVVFA------------KL-KTLDLSSNKLA-FMGPEFQSA 213

Query: 543 QGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS-GQIPQSMSNLSFLNHLNLSNN 601
            G+  ++L +N L   I   +   +++E  DL  N    G +    S    +  +     
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 602 NLV 604
             +
Sbjct: 273 KKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 36/250 (14%), Positives = 85/250 (34%), Gaps = 59/250 (23%)

Query: 367 SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSI 426
           ++       +      + ++ L   + +  ++  +++ LDL  N L     + +   F+ 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTK 59

Query: 427 LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI 486
           L++LNL SN  +    ++   L+ L+ LD+ +N +   +    +                
Sbjct: 60  LELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELLVGPS---------------- 100

Query: 487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQ 546
                                             + ++  + N  S  +       QG +
Sbjct: 101 ----------------------------------IETLHAANNNIS-RVSCS--RGQGKK 123

Query: 547 SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG-QIPQSMSNLSFLNHLNLSNNNLVG 605
           ++ L++N +T     + G    ++ LDL  N++      +  ++   L HLNL  N +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 606 KIPSSTQLQS 615
            +        
Sbjct: 183 DVKGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 53/295 (17%), Positives = 106/295 (35%), Gaps = 23/295 (7%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           ++ +  +  + S   +  ++K LDLS N L+      L+    LE L++ SN L     +
Sbjct: 17  VTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY---ET 73

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           L LE+L++++ L L+ N      +         + +       +S+              
Sbjct: 74  LDLESLSTLRTLDLNNN-----YV-QELLVGPSIETLHAANNNISRVSCSRG-------- 119

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNN 179
              +++ L +++I            R+  LDL  N I   +          LE+L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
            +     ++ F  L  L     + N L   + P +     +T + LR+  L       L+
Sbjct: 180 FIYDVKGQVVFAKLKTL---DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLI 294
             + L   D+          R F++   +   +     +   G  + +     L 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 74.6 bits (184), Expect = 1e-14
 Identities = 53/357 (14%), Positives = 113/357 (31%), Gaps = 45/357 (12%)

Query: 10  IPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSI 69
           I     N    K   ++ + L   +        +++ L +  N L   +S+  L   T +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 70  KRLYLSENDELGGKI--PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLR 127
           + L LS N      +        L  L +  +    + +     L +  +     +E+L 
Sbjct: 61  ELLNLSSN-----VLYETLDLESLSTLRTLDLNNNYVQE-----LLVGPS-----IETLH 105

Query: 128 LGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSE 187
             ++ I   +     R +   ++ L+N  +        G  S ++YLDL  N+++     
Sbjct: 106 AANNNI-SRV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 188 IHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDL 247
               +   L       N +        V   +L  L+L S  L        QS   +  +
Sbjct: 163 ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWI 219

Query: 248 DISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307
            + + ++   I +    S     + ++ GN  + G  +        + T           
Sbjct: 220 SLRNNKLV-LIEKALRFSQ-NLEHFDLRGNGFHCGTLRDFFSKNQRVQT----------- 266

Query: 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNF 364
               ++      +         +  L         D+P  +      R + LGH++ 
Sbjct: 267 ----VAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 54/324 (16%), Positives = 99/324 (30%), Gaps = 79/324 (24%)

Query: 145 KRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGN 204
            R     ++++ L  ++        N++ LDLS N L+  +S       T          
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFT---------- 58

Query: 205 SLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWN 264
                         +L +L L S  L     L   S   L  LD+++  +   +  G   
Sbjct: 59  --------------KLELLNLSSNVLYETLDLESLST--LRTLDLNNNYVQE-LLVGP-- 99

Query: 265 SIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGE 324
                  L+ + N I                              + +S S         
Sbjct: 100 ---SIETLHAANNNI------------------------------SRVSCSRG------- 119

Query: 325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTG-SLPMSIGTLSSLLSLNL 383
                 + + L+ N  +           R++ L+L  N     +      +  +L  LNL
Sbjct: 120 ---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
           + N +  +       F+ L+ LDL  N+L   +        + +  ++LR+NK       
Sbjct: 177 QYNFIYDVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEK 231

Query: 444 QLCGLAFLQILDVASNSLSGTIPR 467
            L     L+  D+  N       R
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLR 255

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (250), Expect = 2e-22
 Identities = 63/292 (21%), Positives = 117/292 (40%), Gaps = 23/292 (7%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
           E        L L KN       D + ++  L  L L  N  +   P +   L +L +L L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
           R+N L  I    F   S+L  LD+ EN++V  +  ++ +    LK L +  N        
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 444 QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA 503
              GL  L+ L +   +L+      +++L  +         + L     +  +   F+  
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL-------IVLRLRHLNINAIRDYSFKRL 199

Query: 504 SLVMKGVLVEYNSI----------LNLVRSIDVSKNIFSGEIPVEV-TNLQGLQSLNLSH 552
             +    +  +  +          LNL  S+ ++    +  +P     +L  L+ LNLS+
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNL-TSLSITHCNLT-AVPYLAVRHLVYLRFLNLSY 257

Query: 553 NLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
           N ++  I  ++   +  ++ + L   QL+   P +   L++L  LN+S N L
Sbjct: 258 NPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 61/330 (18%), Positives = 113/330 (34%), Gaps = 55/330 (16%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
                 LDL    +            +LE L+L+ N +   V    F NL  L       
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
           N              +L ++ L                  L  LDIS  +I   +    +
Sbjct: 90  N--------------RLKLIPLGV----------FTGLSNLTKLDISENKIVI-LLDYMF 124

Query: 264 NSIYQYFYLNISGNQIYGGIPK--FDNPSMPLITTPSDLLGPIFDLSNNALS----GSIF 317
             +Y    L +  N +   I    F    +  +            L    L+     ++ 
Sbjct: 125 QDLYNLKSLEVGDNDL-VYISHRAFSG--LNSLEQ--------LTLEKCNLTSIPTEALS 173

Query: 318 HLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTGSLPMSIGTLS 376
           HL        + +  L+L   N +  I D     L RL+ L + H  +  ++  +     
Sbjct: 174 HL--------HGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 377 SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNK 436
           +L SL++ +  L+ +   + ++   L  L+L  N +  +I   +      L+ + L   +
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ 283

Query: 437 FHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
                P    GL +L++L+V+ N L+ T+ 
Sbjct: 284 LAVVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 72/372 (19%), Positives = 136/372 (36%), Gaps = 67/372 (18%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N+ +        +   L+ L+L+ N +++   G  + + +L  L + SNRL+  +  
Sbjct: 39  LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPL 97

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR-FTKLSQDISEILGIFSACV 119
                L+++ +L +SEN               K+       F  L               
Sbjct: 98  GVFTGLSNLTKLDISEN---------------KIVILLDYMFQDLYN------------- 129

Query: 120 ANELESLRLGSSQI-------FGHLTNQLRRFKRLNSLDLSNTILDGSIPF-SLGQISNL 171
              L+SL +G + +       F  L +       L  L L    L  SIP  +L  +  L
Sbjct: 130 ---LKSLEVGDNDLVYISHRAFSGLNS-------LEQLTLEKCNLT-SIPTEALSHLHGL 178

Query: 172 EYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG 231
             L L +  +N  + +  F  L +L     +    +  + PN +    LT L +  C+L 
Sbjct: 179 IVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 232 PRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSM 291
               L ++    L  L++S   IS  I     + + +   + + G Q+   +  +    +
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGL 295

Query: 292 PLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNW 351
             +         + ++S N L+ ++   +        N+E L L  N  +    DC + W
Sbjct: 296 NYLR--------VLNVSGNQLT-TLEESVFHS---VGNLETLILDSNPLAC---DCRLLW 340

Query: 352 LRLRALNLGHNN 363
           +  R   L  N 
Sbjct: 341 VFRRRWRLNFNR 352

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.2 bits (206), Expect = 7e-17
 Identities = 68/312 (21%), Positives = 110/312 (35%), Gaps = 57/312 (18%)

Query: 123 LESLRLGSSQI-------FGHLTNQLRRFKRLNSLDLSN---TILDGSIPFSLGQISNLE 172
           LE L L  + +       F +L N       L +L L +    ++   +   L   SNL 
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFN-------LRTLGLRSNRLKLIPLGVFTGL---SNLT 107

Query: 173 YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQ----LTVLELRSC 228
            LD+S NK+   + +  F +L  L       N  +  I+      F     L  L L  C
Sbjct: 108 KLDISENKIV-ILLDYMFQDLYNLKSLEVGDND-LVYISHRA---FSGLNSLEQLTLEKC 162

Query: 229 HLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK--F 286
           +L       L     L  L +    I+  I    +  +Y+   L IS       +     
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 287 DNPSMPLITTPSDLLGPIFDLSNNALS----GSIFHLICQGENFSNNIEFLKLSKNNFSG 342
              ++      + L      +++  L+     ++ HL          + FL LS N  S 
Sbjct: 222 YGLNL------TSL-----SITHCNLTAVPYLAVRHL--------VYLRFLNLSYNPIS- 261

Query: 343 DIPDCW-MNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSS 401
            I        LRL+ + L         P +   L+ L  LN+  N L+ +  + F +  +
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321

Query: 402 LEVLDLGENELV 413
           LE L L  N L 
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 39/207 (18%), Positives = 77/207 (37%), Gaps = 30/207 (14%)

Query: 399 FSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVAS 458
            +    +       V ++P  I    +  ++L+L  N+       +      L+ L++  
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65

Query: 459 NSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSIL 518
           N +S   P   NNL  +       + + L S+        +F                 L
Sbjct: 66  NIVSAVEPGAFNNLFNL-------RTLGLRSNRLKLIPLGVFTG---------------L 103

Query: 519 NLVRSIDVSKNIFSGEIPVEV-TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSA 576
           + +  +D+S+N     +   +  +L  L+SL +  N L   I       + S+E L L  
Sbjct: 104 SNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEK 161

Query: 577 NQLSGQIPQSMSNLSFLNHLNLSNNNL 603
             L+    +++S+L  L  L L + N+
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNI 188

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 545 LQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV 604
            + L+L  N +     D       +E L+L+ N +S   P + +NL  L  L L +N L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 605 GKIPSST 611
             IP   
Sbjct: 94  -LIPLGV 99

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 98.4 bits (246), Expect = 2e-22
 Identities = 77/406 (18%), Positives = 137/406 (33%), Gaps = 85/406 (20%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLY 73
             +L       L    +  T +    ++  +  L V   ++    S  G+E LT+++ L 
Sbjct: 18  DADLAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKVA---SIQGIEYLTNLEYLN 72

Query: 74  LSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI 133
           L+ N ++    P     L KLT+  +   K++ DIS +  +        L  L L    I
Sbjct: 73  LNGN-QITDISP--LSNLVKLTNLYIGTNKIT-DISALQNL------TNLRELYLNEDNI 122

Query: 134 -----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEI 188
                  +LT        + SL+L        +   L  ++ L YL ++ +K+       
Sbjct: 123 SDISPLANLTK-------MYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDV---T 171

Query: 189 HFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLD 248
              NLT L     N N              Q+  +              L S   L+   
Sbjct: 172 PIANLTDLYSLSLNYN--------------QIEDISP------------LASLTSLHYFT 205

Query: 249 ISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLS 308
               +I+   P      +     L I  N+I   +    N  +  +T          ++ 
Sbjct: 206 AYVNQITDITPVANMTRLN---SLKIGNNKI-TDLSPLAN--LSQLTW--------LEIG 251

Query: 309 NNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTG 366
            N +S              +   ++ L +  N  S DI     N  +L +L L +N    
Sbjct: 252 TNQISDI--------NAVKDLTKLKMLNVGSNQIS-DISVL-NNLSQLNSLFLNNNQLGN 301

Query: 367 SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
                IG L++L +L L  N ++ I P    + S ++  D     +
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 97.2 bits (243), Expect = 5e-22
 Identities = 71/391 (18%), Positives = 140/391 (35%), Gaps = 75/391 (19%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L        +      L S+  L ++  ++ S  +  +  + +LE+L++  N++      
Sbjct: 29  LQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQIT---DI 81

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L NL  +  LY+  N        ++   L  L    +    +S DIS +  +      
Sbjct: 82  SPLSNLVKLTNLYIGTN---KITDISALQNLTNLRELYLNEDNIS-DISPLANL------ 131

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
            ++ SL LG++     L+  L     LN L ++ + +    P     +++L  L L+ N+
Sbjct: 132 TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQ 188

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           +          +LT L +F A  N              Q+T +              + +
Sbjct: 189 IE---DISPLASLTSLHYFTAYVN--------------QITDITP------------VAN 219

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
              LN L I + +I+   P    + +    +L I  NQI   I    +  +  +      
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLT---WLEIGTNQI-SDINAVKD--LTKLKM---- 269

Query: 301 LGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALN 358
                ++ +N +S             +N   +  L L+ N    +  +       L  L 
Sbjct: 270 ----LNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 359 LGHNNFTGSLPMSIGTLSSLLSLNLRNNILS 389
           L  N+ T   P  + +LS + S +  N ++ 
Sbjct: 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 96.8 bits (242), Expect = 6e-22
 Identities = 76/460 (16%), Positives = 148/460 (32%), Gaps = 119/460 (25%)

Query: 147 LNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
             +L      ++   P     ++      L    +   V++    ++TKL          
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELESITKLVV----AGEK 55

Query: 207 IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSI 266
           +  I                           ++    L  L+++  +I+   P      +
Sbjct: 56  VASIQG-------------------------IEYLTNLEYLNLNGNQITDISPLSNLVKL 90

Query: 267 YQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENF 326
                L I  N+I   I    N  +  +            L+ + +S             
Sbjct: 91  T---NLYIGTNKI-TDISALQN--LTNLRE--------LYLNEDNISDI--------SPL 128

Query: 327 SN--NIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
           +N   +  L L  N+   D+    ++ +  L  L +  +      P  I  L+ L SL+L
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
             N +  I P    + +SL       N++    P       + L  L + +NK     P 
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITPV---ANMTRLNSLKIGNNKITDLSP- 238

Query: 444 QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA 503
            L  L+ L  L++ +N +S      IN +                               
Sbjct: 239 -LANLSQLTWLEIGTNQISD-----INAVKD----------------------------- 263

Query: 504 SLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI 563
                         L  ++ ++V  N  S    +   NL  L SL L++N L     + I
Sbjct: 264 --------------LTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVI 307

Query: 564 GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
           G + ++ +L LS N ++   P  +++LS ++  + +N  +
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.2 bits (217), Expect = 1e-18
 Identities = 70/406 (17%), Positives = 138/406 (33%), Gaps = 97/406 (23%)

Query: 63  LENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANE 122
             +L    R  L +          +  +L  +T   +   K++  I  I           
Sbjct: 18  DADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVA-SIQGI------EYLTN 67

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
           LE L L  +QI     + L    +L +L +    +  +   +L  ++NL  L L+ + ++
Sbjct: 68  LEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNIS 123

Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR 242
                    NLTK+       N  +  ++P       +T L                   
Sbjct: 124 DI---SPLANLTKMYSLNLGANHNLSDLSPL----SNMTGLN------------------ 158

Query: 243 ELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLG 302
                                       YL ++ +++   +    N  +  + +      
Sbjct: 159 ----------------------------YLTVTESKV-KDVTPIAN--LTDLYS------ 181

Query: 303 PIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLG 360
               L+ N +              ++  ++ +     N  +   P   M   RL +L +G
Sbjct: 182 --LSLNYNQIEDI--------SPLASLTSLHYFTAYVNQITDITPVANMT--RLNSLKIG 229

Query: 361 HNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWI 420
           +N  T   P  +  LS L  L +  N +S I   + K+ + L++L++G N++  S  S +
Sbjct: 230 NNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQI--SDISVL 283

Query: 421 GERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
               S L  L L +N+   +    + GL  L  L ++ N ++   P
Sbjct: 284 NN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.8 bits (216), Expect = 1e-18
 Identities = 60/285 (21%), Positives = 113/285 (39%), Gaps = 46/285 (16%)

Query: 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI 387
            N+E+L L+ N  +   P   +   +L  L +G N  T     ++  L++L  L L  + 
Sbjct: 66  TNLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKITD--ISALQNLTNLRELYLNEDN 121

Query: 388 LSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG 447
           +S I P    N + +  L+LG N  + S  S +    + L  L +  +K     PI    
Sbjct: 122 ISDISP--LANLTKMYSLNLGANHNL-SDLSPLSN-MTGLNYLTVTESKVKDVTPIA--N 175

Query: 448 LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVM 507
           L  L  L +  N +    P  + +L+++            Y +                 
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSL-------HYFTAYVNQ---------------- 210

Query: 508 KGVLVEYNSILNLV--RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV 565
              + +   + N+    S+ +  N  +   P+   NL  L  L +  N ++    + +  
Sbjct: 211 ---ITDITPVANMTRLNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISD--INAVKD 263

Query: 566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS 610
           +  ++ L++ +NQ+S      ++NLS LN L L+NN L  +    
Sbjct: 264 LTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 83.7 bits (208), Expect = 2e-17
 Identities = 70/440 (15%), Positives = 143/440 (32%), Gaps = 101/440 (22%)

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
             +L    + I   +              L    +   +     ++ ++  L ++  K+ 
Sbjct: 2   AATLATLPAPI-NQIFP-DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA 57

Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF----QLTVLELRSCHLGPRFPLWL 238
            ++  I    LT L +   NGN +        + P     +LT L + +  +       L
Sbjct: 58  -SIQGIE--YLTNLEYLNLNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISAL 106

Query: 239 QSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
           Q+   L +L ++   IS   P      +Y    LN+  N     +    N  M  +    
Sbjct: 107 QNLTNLRELYLNEDNISDISPLANLTKMY---SLNLGANHNLSDLSPLSN--MTGLNY-- 159

Query: 299 DLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRA 356
                   ++ + +              +N  ++  L L+ N      P   +    L  
Sbjct: 160 ------LTVTESKVKDV--------TPIANLTDLYSLSLNYNQIEDISPLASLT--SLHY 203

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
                N  T   P  +  ++ L SL + NN ++ + P    N S L  L++G N++   I
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DI 258

Query: 417 PSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMA 476
            +   +  + LK+LN+ SN+        L  L+ L  L + +N L       I  L+ + 
Sbjct: 259 NAV--KDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL- 313

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIP 536
                                                         ++ +S+N  +   P
Sbjct: 314 ---------------------------------------------TTLFLSQNHITDIRP 328

Query: 537 VEVTNLQGLQSLNLSHNLLT 556
           +   +L  + S + ++ ++ 
Sbjct: 329 LA--SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.8 bits (190), Expect = 3e-15
 Identities = 48/287 (16%), Positives = 97/287 (33%), Gaps = 65/287 (22%)

Query: 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNIL 388
                 L K + +  +    +    +  L +       S+   I  L++L  LNL  N +
Sbjct: 23  EGIRAVLQKASVTDVVTQEELE--SITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQI 78

Query: 389 SGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGL 448
           + I P    N   L  L +G N++  +  S +    + L+ L L  +         L  L
Sbjct: 79  TDISP--LSNLVKLTNLYIGTNKI--TDISALQN-LTNLRELYLNEDNISD--ISPLANL 131

Query: 449 AFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMK 508
             +  L++ +N    +    ++N++                                   
Sbjct: 132 TKMYSLNLGANHNL-SDLSPLSNMT----------------------------------- 155

Query: 509 GVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS 568
                      L   + V+++      P+   NL  L SL+L++N +       +  + S
Sbjct: 156 ----------GL-NYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIED--ISPLASLTS 200

Query: 569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQS 615
           +       NQ++   P  ++N++ LN L + NN +   +     L  
Sbjct: 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSPLANLSQ 244

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.5 bits (246), Expect = 6e-22
 Identities = 87/486 (17%), Positives = 151/486 (31%), Gaps = 99/486 (20%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQG---- 56
              +    ++P    N+ S      + +E          +  ++    +     +     
Sbjct: 18  RHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL 76

Query: 57  NVSSLGL----ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEIL 112
            +++LGL    E    ++ L  S N  L  ++P     L  L   +     LS       
Sbjct: 77  ELNNLGLSSLPELPPHLESLVASCN-SL-TELPELPQSLKSLLVDNNNLKALSDLPP--- 131

Query: 113 GIFSACVANELESLRLGSSQI-----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQ 167
                     LE L + ++Q+       + +        L  +D+ N  L   +P     
Sbjct: 132 ---------LLEYLGVSNNQLEKLPELQNSSF-------LKIIDVDNNSLK-KLP---DL 171

Query: 168 ISNLEYLDLSNNKLNGTVSEIH-FVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELR 226
             +LE++   NN+L     E+    NL  L    A+ NSL  K+      P  L  +   
Sbjct: 172 PPSLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLK-KLPDL---PLSLESIVAG 223

Query: 227 SCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKF 286
           +  L       LQ+   L  +   +  +   +P    +       LN+  N +       
Sbjct: 224 NNIL--EELPELQNLPFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYL------- 269

Query: 287 DNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPD 346
                 L   P  L     D+S N  S               N+ +L  S N     + D
Sbjct: 270 ----TDLPELPQSL--TFLDVSENIFS--------GLSELPPNLYYLNASSNEIR-SLCD 314

Query: 347 CWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406
              +   L  LN+ +N     LP     L     L    N L+ +         +L+ L 
Sbjct: 315 LPPS---LEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPEL----PQNLKQLH 363

Query: 407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
           +  N L    P           + +LR N    + P        L+ L V +N L    P
Sbjct: 364 VEYNPLR-EFPDIPE------SVEDLRMNSHLAEVPELPQN---LKQLHVETNPLR-EFP 412

Query: 467 RCINNL 472
               ++
Sbjct: 413 DIPESV 418

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 85/462 (18%), Positives = 152/462 (32%), Gaps = 106/462 (22%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            S N    ++P    +L SL   + +   L+            LE+L V +N+L+  +  
Sbjct: 98  ASCNSLT-ELPELPQSLKSLLVDNNNLKALSD-------LPPLLEYLGVSNNQLE-KLPE 148

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           L   N + +K + +  N  L  K+P     L  + + + +  +L +              
Sbjct: 149 LQ--NSSFLKIIDVDNN-SLK-KLPDLPPSLEFIAAGNNQLEELPE-------------- 190

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
                          +L         L ++   N  L   +P       +LE +   NN 
Sbjct: 191 -------------LQNLPF-------LTAIYADNNSLK-KLP---DLPLSLESIVAGNNI 226

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           L   + E+   NL  L    A+ N L  K  P+  P   L  L +R  +L    P   QS
Sbjct: 227 LE-ELPELQ--NLPFLTTIYADNNLL--KTLPDLPP--SLEALNVRDNYLT-DLPELPQS 278

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
              L+  +   + +S   P          +YLN S N+I             L   P  L
Sbjct: 279 LTFLDVSENIFSGLSELPP--------NLYYLNASSNEI-----------RSLCDLPPSL 319

Query: 301 LGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLG 360
                ++SNN L   +  L          +E L  S N+ + ++P+   N   L+ L++ 
Sbjct: 320 E--ELNVSNNKLI-ELPALPP-------RLERLIASFNHLA-EVPELPQN---LKQLHVE 365

Query: 361 HNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWI 420
           +N      P    ++  L   +    +             +L+ L +  N L    P   
Sbjct: 366 YNPLR-EFPDIPESVEDLRMNSHLAEVPELP--------QNLKQLHVETNPLR-EFPDIP 415

Query: 421 GERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS 462
                 ++ L + S +    +         L+      +   
Sbjct: 416 ES----VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 4e-20
 Identities = 96/557 (17%), Positives = 176/557 (31%), Gaps = 131/557 (23%)

Query: 65  NLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELE 124
           + T ++      ++    ++P     +   T +   +++  ++                E
Sbjct: 9   SNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPP----------GNGE 56

Query: 125 SLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGT 184
              +  S++   L  Q         L+L+N  L  S+P       +LE L  S N L   
Sbjct: 57  QREMAVSRLRDCLDRQAH------ELELNNLGLS-SLPELPP---HLESLVASCNSLTEL 106

Query: 185 VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQREL 244
                  +L  L     N  +L          P  L  L + +  L  + P  LQ+   L
Sbjct: 107 PELPQ--SLKSLLVDNNNLKAL-------SDLPPLLEYLGVSNNQL-EKLPE-LQNSSFL 155

Query: 245 NDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPI 304
             +D+ +  +  K+P    +      ++    NQ+           +P +     L    
Sbjct: 156 KIIDVDNNSLK-KLP----DLPPSLEFIAAGNNQLE---------ELPELQNLPFLT--A 199

Query: 305 FDLSNNALS------GSIFHLICQGENFSN--------NIEFLKLSKNNFSGDIPDCWMN 350
               NN+L        S+  ++                 +  +    N     +PD   +
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPS 258

Query: 351 WLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410
              L ALN+  N  T  LP    +L+ L       + LS + P       +L  L+   N
Sbjct: 259 ---LEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSN 307

Query: 411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN 470
           E+  S+          L+ LN+ +NK   + P     L   + L  + N L+  +P    
Sbjct: 308 EIR-SLCDLPPS----LEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQ 357

Query: 471 NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSI----DV 526
           NL              L+                       VEYN +           D+
Sbjct: 358 NLK------------QLH-----------------------VEYNPLREFPDIPESVEDL 382

Query: 527 SKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQS 586
             N    E+P    NL+    L++  N L    PD      S+E L +++ ++      +
Sbjct: 383 RMNSHLAEVPELPQNLK---QLHVETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFA 435

Query: 587 MSNLSFLNHLNLSNNNL 603
                 L      +++ 
Sbjct: 436 HETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.4 bits (217), Expect = 3e-18
 Identities = 84/449 (18%), Positives = 155/449 (34%), Gaps = 88/449 (19%)

Query: 161 IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQL 220
           I       + L+     ++ L     E    N+     +    +       P      ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 221 TVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIY 280
            V  LR C             R+ ++L++++  +S  +P            L  S N + 
Sbjct: 61  AVSRLRDCLD-----------RQAHELELNNLGLS-SLP----ELPPHLESLVASCNSL- 103

Query: 281 GGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNF 340
             +P+       L  +   LL  + + +  ALS                +E+L +S N  
Sbjct: 104 TELPE-------LPQSLKSLL--VDNNNLKALSDLP-----------PLLEYLGVSNNQL 143

Query: 341 SGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFS 400
              +P+   N   L+ +++ +N+    LP       SL  +   NN L  +     +N  
Sbjct: 144 E-KLPELQ-NSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQLEEL--PELQNLP 195

Query: 401 SLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS 460
            L  +    N L   +P         L+ +   +N        +L  L FL  +   +N 
Sbjct: 196 FLTAIYADNNSLK-KLPDLPLS----LESIVAGNNILE--ELPELQNLPFLTTIYADNNL 248

Query: 461 LSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL 520
           L  T+P    +L A+ + D+Y       + L    QS         +  + V  N    L
Sbjct: 249 LK-TLPDLPPSLEALNVRDNY------LTDLPELPQS---------LTFLDVSENIFSGL 292

Query: 521 ------VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDL 574
                 +  ++ S N     +     +L+    LN+S+N L   +P        +E L  
Sbjct: 293 SELPPNLYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPALPP---RLERLIA 344

Query: 575 SANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
           S N L+ ++P+   NL     L++  N L
Sbjct: 345 SFNHLA-EVPELPQNLK---QLHVEYNPL 369

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 4e-18
 Identities = 64/305 (20%), Positives = 108/305 (35%), Gaps = 84/305 (27%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
           +        L+L+    S  +P+   +   L +L    N+ T  LP    +L SLL  N 
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 384 RNNILSGIIPT---------------SFKNFSSLEVLDLGENELVGSIPSWIGERFSILK 428
               LS + P                  +N S L+++D+  N L   +P         L+
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS----LE 176

Query: 429 ILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY 488
            +   +N+   + P +L  L FL  +   +NSL   +P    +L                
Sbjct: 177 FIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSL---------------- 217

Query: 489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSL 548
                                             SI    NI   E+P E+ NL  L ++
Sbjct: 218 ---------------------------------ESIVAGNNILE-ELP-ELQNLPFLTTI 242

Query: 549 NLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIP 608
              +NLL   +PD      S+E+L++  N L+  +P+   +L+FL+      + L    P
Sbjct: 243 YADNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 609 SSTQL 613
           +   L
Sbjct: 298 NLYYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 75.0 bits (185), Expect = 3e-14
 Identities = 56/292 (19%), Positives = 99/292 (33%), Gaps = 59/292 (20%)

Query: 337 KNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSF 396
           +      + DC     +   L L +   + SLP     L SL       N L+  +P   
Sbjct: 58  REMAVSRLRDCLDR--QAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELP 110

Query: 397 KNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDV 456
           ++  SL V +     L    P         L+ L + +N+     P +L   +FL+I+DV
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE-KLP-ELQNSSFLKIIDV 160

Query: 457 ASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNS 516
            +NSL   +P    +L  +A  ++                              L E   
Sbjct: 161 DNNSLK-KLPDLPPSLEFIAAGNNQ-----------------------------LEELPE 190

Query: 517 ILNLV--RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDL 574
           + NL    +I    N    ++P    +L+   S+   +N+L       +  +  + ++  
Sbjct: 191 LQNLPFLTAIYADNNSLK-KLPDLPLSLE---SIVAGNNILE--ELPELQNLPFLTTIYA 244

Query: 575 SANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDL 626
             N L   +P    +L     LN+ +N L         L     S    + L
Sbjct: 245 DNNLLK-TLPDLPPSLE---ALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 292

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.4 bits (173), Expect = 7e-13
 Identities = 49/269 (18%), Positives = 88/269 (32%), Gaps = 55/269 (20%)

Query: 352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE 411
             L+      +N T  +P+    + S        +      P        + V  L +  
Sbjct: 11  TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 412 LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINN 471
                             L L +       P        L+ L  + NSL+  +P    +
Sbjct: 70  DRQ------------AHELELNNLGLS-SLP---ELPPHLESLVASCNSLT-ELPELPQS 112

Query: 472 LSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIF 531
           L                 SL  +  +             L   + +  L+  + VS N  
Sbjct: 113 LK----------------SLLVDNNN-------------LKALSDLPPLLEYLGVSNNQL 143

Query: 532 SGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLS 591
             ++P E+ N   L+ +++ +N L  ++PD      S+E +    NQL  ++P  + NL 
Sbjct: 144 E-KLP-ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLP 195

Query: 592 FLNHLNLSNNNLVGKIPSSTQLQSFGASS 620
           FL  +   NN+L         L+S  A +
Sbjct: 196 FLTAIYADNNSLKKLPDLPLSLESIVAGN 224

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 6e-22
 Identities = 86/475 (18%), Positives = 162/475 (34%), Gaps = 51/475 (10%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N         +  L+ L+ L LS N + S          DLE+L V  NRLQ    +
Sbjct: 59  LSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ----N 114

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS---FSMRFTKLSQDISEILGIFSA 117
           +    + S++ L LS ND     +   FG L KLT     + +F +L       L +   
Sbjct: 115 ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCI 174

Query: 118 CVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS 177
            +      ++ G ++        +       +   S  +          Q+SN++  D +
Sbjct: 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 178 NNKL-NGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 236
             +L            L  +                 +  P  +  L + +         
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT------- 287

Query: 237 WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITT 296
            +  + +  +   S T            ++      ++           F   ++  +  
Sbjct: 288 -ITERIDREEFTYSET------------ALKSLMIEHVKNQVFL-----FSKEALYSVFA 329

Query: 297 PSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRA 356
             ++      LS +       H++C      ++  FL  ++N F+  +        RL+ 
Sbjct: 330 EMNIK----MLSISDT--PFIHMVCPPS--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNN----ILSGIIPTSFKNFSSLEVLDLGENEL 412
           L L  N    +         ++ SL   +     + S     +     S+ VL+L  N L
Sbjct: 382 LILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 413 VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
            GS+   +  +   +K+L+L +N+     P  +  L  LQ L+VASN L  ++P 
Sbjct: 441 TGSVFRCLPPK---VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPD 490

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 98.8 bits (246), Expect = 1e-21
 Identities = 74/420 (17%), Positives = 155/420 (36%), Gaps = 29/420 (6%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNS-TVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           +S N+ Q  I      + SL++LDLS N+ +   V      +  L FL + + + +  + 
Sbjct: 107 VSHNRLQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLD 162

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
            L + +L     L    +  + G    S       T   + F   S    ++    +A  
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP-----FSLGQISNLEYL 174
             +L +++L        +T      +    L+++   ++ +       F       +EYL
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 175 DLSNNKLNGTVSEIHFVN----LTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHL 230
           ++ N  +   +    F      L  L          +F     +    ++ +  L     
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 231 GPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPS 290
                +   S      L+ +    +  + +G  +++ +   L +  N +       +   
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLK------NFFK 394

Query: 291 MPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMN 350
           + L+T     L    D+S N+L+   +   C     + +I  L LS N  +G +  C   
Sbjct: 395 VALMTKNMSSLE-TLDVSLNSLNSHAYDRTCAW---AESILVLNLSSNMLTGSVFRCLPP 450

Query: 351 WLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410
             +++ L+L +N    S+P  +  L +L  LN+ +N L  +    F   +SL+ + L +N
Sbjct: 451 --KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.9 bits (223), Expect = 6e-19
 Identities = 90/545 (16%), Positives = 163/545 (29%), Gaps = 119/545 (21%)

Query: 67  TSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANE 122
              K L LS+N      I          L +L    +                     N 
Sbjct: 52  PRTKALSLSQN-----SISELRMPDISFLSELRVLRLSH-------------------NR 87

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
           + SL      +F    +       L  LD+S+  L  +I      +++L +LDLS N  +
Sbjct: 88  IRSLDFH---VFLFNQD-------LEYLDVSHNRL-QNISC--CPMASLRHLDLSFNDFD 134

Query: 183 GTVSEIHFVNLTKLAFFRANGN---SLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
                  F NLTKL F   +      L      +      L  L       G    L + 
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIY-QYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
           +   L+ +   ++  S ++        + Q   + ++         +       L   P 
Sbjct: 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ----RLMTFLSELTRGP- 249

Query: 299 DLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALN 358
                        L+ ++ H+    +      +F                + +L +  L 
Sbjct: 250 -----------TLLNVTLQHIETTWKCSVKLFQFFWPRP-----------VEYLNIYNLT 287

Query: 359 LGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418
           +           S   L SL+  +++N +        +  F+ + +  L  ++    I  
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-PFIHM 346

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAIT 478
                 S    LN   N F          L  LQ L +  N L     +       M+  
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSL 405

Query: 479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVE 538
           ++ D                                 S+ +L           S      
Sbjct: 406 ETLD--------------------------------VSLNSLN----------SHAYDRT 423

Query: 539 VTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNL 598
               + +  LNLS N+LTG +   +     ++ LDL  N++   IP+ +++L  L  LN+
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480

Query: 599 SNNNL 603
           ++N L
Sbjct: 481 ASNQL 485

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 94.7 bits (236), Expect = 6e-21
 Identities = 58/324 (17%), Positives = 116/324 (35%), Gaps = 30/324 (9%)

Query: 289 PSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFS-NNIEFLKLSKNNFSGDIPDC 347
           P  P        L       +  +      +    E+ + NN + +    +         
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407
             ++ ++  LNL           +     ++  L +  N +  + P  F+N   L VL L
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
             N+L  S+P  I      L  L++ +N               LQ L ++SN L+     
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183

Query: 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL------- 520
            I +L    ++ +    + +  ++                  +   +NSI  +       
Sbjct: 184 LIPSLFHANVSYNLLSTLAIPIAVEE----------------LDASHNSINVVRGPVNVE 227

Query: 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQL 579
           +  + +  N  + +    + N  GL  ++LS+N L  +I  +    M+ +E L +S N+L
Sbjct: 228 LTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL 284

Query: 580 SGQIPQSMSNLSFLNHLNLSNNNL 603
              +      +  L  L+LS+N+L
Sbjct: 285 V-ALNLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 61/308 (19%), Positives = 108/308 (35%), Gaps = 38/308 (12%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
              N+ +   +           +   +E L L+           +     ++ L +G N 
Sbjct: 51  TFKNSTMR-KL-----PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA 104

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGER 423
                P     +  L  L L  N LS +    F N   L  L +  N L   I     + 
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA 163

Query: 424 FSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN----NLSAMAITD 479
            + L+ L L SN+      + L  +  L   +V+ N LS T+   I     + S  +I  
Sbjct: 164 TTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLS-TLAIPIAVEELDASHNSINV 219

Query: 480 SYDQAVILYSSLRSEGQSEIFEDASLVMKG-VLVEYNSILNLV--RSIDVSKNIFSGEIP 536
                      L             L ++   L +   +LN      +D+S N    +I 
Sbjct: 220 VRGPV---NVELTI-----------LKLQHNNLTDTAWLLNYPGLVEVDLSYNELE-KIM 264

Query: 537 VEV-TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNH 595
                 +Q L+ L +S+N L   +      + +++ LDLS N L   + ++      L +
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 596 LNLSNNNL 603
           L L +N++
Sbjct: 323 LYLDHNSI 330

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.8 bits (231), Expect = 3e-20
 Identities = 66/317 (20%), Positives = 115/317 (36%), Gaps = 59/317 (18%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
           +L++  +   I         F+    I+ L +  N      P  + N   L  L L  N+
Sbjct: 75  NLNDLQIE-EI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128

Query: 364 FTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGE 422
            + SLP  I      L +L++ NN L  I   +F+  +SL+ L L  N L   +      
Sbjct: 129 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---S 183

Query: 423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN------NLSAMA 476
               L   N+  N         L     ++ LD + NS++  +   +N       L    
Sbjct: 184 LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNN 237

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI----------LNLVRSIDV 526
           +TD+    ++ Y  L                  V + YN +          +  +  + +
Sbjct: 238 LTDT--AWLLNYPGLVE----------------VDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 527 SKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQS 586
           S N     + +    +  L+ L+LSHN L   +  N      +E+L L  N +   +   
Sbjct: 280 SNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL- 335

Query: 587 MSNLSFLNHLNLSNNNL 603
            S    L +L LS+N+ 
Sbjct: 336 -STHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 4e-20
 Identities = 63/403 (15%), Positives = 125/403 (31%), Gaps = 64/403 (15%)

Query: 10  IPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSI 69
           I S L        + +     +         +N+ + ++  ++ ++  + +  L++   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71

Query: 70  KRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLG 129
           + L L++  ++      +F     +    M F                   N +  L   
Sbjct: 72  ELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGF-------------------NAIRYL--- 108

Query: 130 SSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIH 189
              +F ++         L  L L    L             L  L +SNN L   + +  
Sbjct: 109 PPHVFQNVPL-------LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDT 160

Query: 190 FVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDI 249
           F   T L   + + N L   ++ + +P   L    +    L       L     + +LD 
Sbjct: 161 FQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYNLLST-----LAIPIAVEELDA 212

Query: 250 SSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSN 309
           S   I+  +       +     L +  N +        N   P +           DLS 
Sbjct: 213 SHNSIN-VVRGPVNVELT---ILKLQHNNL-TDTAWLLN--YPGLVE--------VDLSY 257

Query: 310 NALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLP 369
           N L   I +           +E L +S N     +         L+ L+L HN+    + 
Sbjct: 258 NELE-KIMYHPFVK---MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVE 311

Query: 370 MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
            +      L +L L +N +  +         +L+ L L  N+ 
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 84.3 bits (209), Expect = 2e-17
 Identities = 63/379 (16%), Positives = 124/379 (32%), Gaps = 60/379 (15%)

Query: 84  IPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRR 143
           I ++    C           +     ++   F     N  + +   +S +       L  
Sbjct: 13  IDSNLQYDCVFYDVH-----IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
           F+++  L+L++  ++    ++      ++ L +  N +   +    F N+  L       
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLER 126

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
           N               L+ L                +  +L  L +S+  +  +I    +
Sbjct: 127 N--------------DLSSLPRGI----------FHNTPKLTTLSMSNNNLE-RIEDDTF 161

Query: 264 NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQG 323
            +      L +S N++   +     PS+              ++S N LS ++   I   
Sbjct: 162 QATTSLQNLQLSSNRL-THVDLSLIPSLFHA-----------NVSYNLLS-TLAIPI--- 205

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
                 +E L  S N+ +  +         L  L L HNN T      +     L+ ++L
Sbjct: 206 -----AVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT-DTA-WLLNYPGLVEVDL 255

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
             N L  I+   F     LE L +  N LV ++  +       LK+L+L  N        
Sbjct: 256 SYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVER 312

Query: 444 QLCGLAFLQILDVASNSLS 462
                  L+ L +  NS+ 
Sbjct: 313 NQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 72/428 (16%), Positives = 143/428 (33%), Gaps = 98/428 (22%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
              +  +    + L +   ++ L+L+  ++        +  + ++ L +  N ++  +  
Sbjct: 52  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP 110

Query: 61  LGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
              +N+  +  L L  N      +       F    KLT+ SM    L + I +    F 
Sbjct: 111 HVFQNVPLLTVLVLERN-----DLSSLPRGIFHNTPKLTTLSMSNNNLER-IED--DTFQ 162

Query: 117 ACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL 176
           A  +  L++L+L S+++       L     L   ++S  +L      +L     +E LD 
Sbjct: 163 ATTS--LQNLQLSSNRL---THVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 212

Query: 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 236
           S+N +N  V     V LT L   +   N+L                              
Sbjct: 213 SHNSIN-VVRGPVNVELTIL---KLQHNNLT---------------------DTA----- 242

Query: 237 WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITT 296
           WL +   L ++D+S   +  KI    +  + +   L IS N++                 
Sbjct: 243 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL----------------- 284

Query: 297 PSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRA 356
                         AL+     +          ++ L LS N+    +      + RL  
Sbjct: 285 -------------VALNLYGQPI--------PTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
           L L HN+   +L   + T  +L +L L +N        +   F ++    + + +    I
Sbjct: 323 LYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKI 377

Query: 417 PSWIGERF 424
              +    
Sbjct: 378 DYQLEHGL 385

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 38/261 (14%), Positives = 92/261 (35%), Gaps = 55/261 (21%)

Query: 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG 421
                 +  ++        +++                ++ +++    + +   +P+ + 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALL 65

Query: 422 ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY 481
           + F  +++LNL   +              +Q L +  N++   +P               
Sbjct: 66  DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLP--------------- 109

Query: 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV-T 540
                            +F++               + L+  + + +N  S  +P  +  
Sbjct: 110 ---------------PHVFQN---------------VPLLTVLVLERNDLS-SLPRGIFH 138

Query: 541 NLQGLQSLNLSHNLLTGRIPDNIGV-MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS 599
           N   L +L++S+N L  RI D+      S+++L LS+N+L+  +   +S +  L H N+S
Sbjct: 139 NTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVS 194

Query: 600 NNNLVGKIPSSTQLQSFGASS 620
            N L   +     ++   AS 
Sbjct: 195 YNLL-STLAIPIAVEELDASH 214

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 93.3 bits (232), Expect = 4e-20
 Identities = 80/405 (19%), Positives = 138/405 (34%), Gaps = 59/405 (14%)

Query: 67  TSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANE 122
             +  + LS N      I     TSF +L  L    +        I      F       
Sbjct: 30  AHVNYVDLSLN-----SIAELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLS--S 80

Query: 123 LESLRLGSSQI-------FGHLTNQLRRFKRLNSLDLS-NTILDGSIP-FSLGQISNLEY 173
           L  L+L  +Q        F  L N       L  L L+   +    +       +++LE 
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLAN-------LEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL------IFKINPNWVPPFQLTVLELRS 227
           L L +N +        F+N+ +        N +                    T+L L S
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQG----KHFTLLRLSS 189

Query: 228 CHLGPRFPLWLQSQR--------ELNDLDISSTRISAKIPRGFWNSIY--QYFYLNISGN 277
             L      WL  ++         +  LD+S       + + F+++I   +   L +S +
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 278 QIYGGIPKFDNPSMPLITTPSDLLGP---IFDLSNNALSGSIFHLICQGENFSNNIEFLK 334
              G      N   P   T   L        DLS + +  ++   +        ++E L 
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSH---FTDLEQLT 305

Query: 335 LSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSGIIP 393
           L++N  +    + +     L  LNL  N    S+   +   L  L  L+L  N +  +  
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGD 364

Query: 394 TSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH 438
            SF    +L+ L L  N+L  S+P  I +R + L+ + L +N + 
Sbjct: 365 QSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 68/415 (16%), Positives = 126/415 (30%), Gaps = 100/415 (24%)

Query: 1   LSGNQFQGQIPSR-LGNLTSLKYLDLSSNELNSTVL--GWLSKVNDLEFLSVYSNRLQGN 57
           L  NQF  Q+ +     L +L+ L L+   L+  VL   +   +  LE L +  N ++  
Sbjct: 86  LDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 58  VSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSA 117
             +    N+     L L+ N               K+ S                     
Sbjct: 145 QPASFFLNMRRFHVLDLTFN---------------KVKSICE-------------EDLLN 176

Query: 118 CVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS 177
                   LRL S  +                 D++   L      +  + +++  LDLS
Sbjct: 177 FQGKHFTLLRLSSITL----------------QDMNEYWLGWEKCGNPFKNTSITTLDLS 220

Query: 178 NNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLW 237
            N    ++++          FF A   + I  +  +       +            F   
Sbjct: 221 GNGFKESMAK---------RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP-DNFTFK 270

Query: 238 LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTP 297
                 +   D+S ++I   + +  ++       L ++ N+I                  
Sbjct: 271 GLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEI------------------ 311

Query: 298 SDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWL-RLRA 356
                       N +  + F  +        ++  L LS+N     I       L +L  
Sbjct: 312 ------------NKIDDNAFWGL-------THLLKLNLSQNFLG-SIDSRMFENLDKLEV 351

Query: 357 LNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410
           L+L +N+   +L       L +L  L L  N L  +    F   +SL+ + L  N
Sbjct: 352 LDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 71/366 (19%), Positives = 122/366 (33%), Gaps = 49/366 (13%)

Query: 271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNI 330
           Y+++S N I   + +     +  +            +        I +   +G    +++
Sbjct: 34  YVDLSLNSI-AELNETSFSRLQDLQF--------LKVEQQTPGLVIRNNTFRG---LSSL 81

Query: 331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS-LPMSI-GTLSSLLSLNLRNNIL 388
             LKL  N F       +     L  L L   N  G+ L  +    L+SL  L LR+N +
Sbjct: 82  IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 389 SGIIP-TSFKNFSSLEVLDLGENELVGSIPS--WIGERFSILKILNLRSNKFHGDFPIQL 445
             I P + F N     VLDL  N++  SI     +  +     +L L S          L
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 446 C--------GLAFLQILDVASNSLSGTIPRCINNLSAMAITDS--YDQAVILYSSLRSEG 495
                        +  LD++ N    ++ +   +  A     S     +  + SS     
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 496 QSEIFEDASLVMKGVLVE-----YNSI----------LNLVRSIDVSKNIFSGEIPVEV- 539
             +        ++   V+      + I             +  + +++N  + +I     
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAF 319

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSM-SNLSFLNHLN 597
             L  L  LNLS N L   I   +   +  +E LDLS N +   +       L  L  L 
Sbjct: 320 WGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELA 377

Query: 598 LSNNNL 603
           L  N L
Sbjct: 378 LDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 76/454 (16%), Positives = 146/454 (32%), Gaps = 103/454 (22%)

Query: 149 SLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIF 208
            +DLS   +      S  ++ +L++L +        +    F  L+ L   + + N  + 
Sbjct: 34  YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93

Query: 209 KINPNWVPP------FQLTVLELRSCHLGPRF--PLWLQSQRELNDLDISSTRISAKIPR 260
                 +          L VL L  C+L        + +    L  L +    I    P 
Sbjct: 94  ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 261 GFWNSIYQYFYLNISGNQIYGGIPK--FDNPSMPLITTPSDLLGPIFDLSNNALS----G 314
            F+ ++ ++  L+++ N++   I +    N      T        + D++   L     G
Sbjct: 148 SFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 315 SIFHLICQGENFSNNIEFLKLSKNNFSG-----DIPDCWMNWLRLRALNLGHNNFTGSLP 369
           + F          +   F +     F        I    ++       + GH NF     
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266

Query: 370 MSIGTL--SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSIL 427
            +   L  S + + +L  + +  ++ + F +F+ LE L L +N                 
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN----------------- 309

Query: 428 KILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVIL 487
           +I  +  N F G        L  L  L+++ N L  +I                      
Sbjct: 310 EINKIDDNAFWG--------LTHLLKLNLSQNFLG-SID--------------------- 339

Query: 488 YSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV-TNLQGLQ 546
                    S +FE+               L+ +  +D+S N     +  +    L  L+
Sbjct: 340 ---------SRMFEN---------------LDKLEVLDLSYNHIR-ALGDQSFLGLPNLK 374

Query: 547 SLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQL 579
            L L  N L   +PD I   + S++ + L  N  
Sbjct: 375 ELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 44/256 (17%), Positives = 92/256 (35%), Gaps = 22/256 (8%)

Query: 376 SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSN 435
           + +  ++L  N ++ +  TSF     L+ L + +      I +      S L IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 436 KFHGDFPIQLCGLAFLQILDVASNSL-SGTIPR-CINNLSAMAITDSYDQAVILYS-SLR 492
           +F         GLA L++L +   +L    +       L+++       + ++L   +++
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL-------EMLVLRDNNIK 142

Query: 493 SEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVT--NLQGLQSLNL 550
               +  F         + + +N + ++       +           T   L  +   ++
Sbjct: 143 KIQPASFF-LNMRRFHVLDLTFNKVKSI------CEEDLLNFQGKHFTLLRLSSITLQDM 195

Query: 551 SHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL---SFLNHLNLSNNNLVGKI 607
           +   L      N     SI +LDLS N     + +   +    + +  L LSN+  +G  
Sbjct: 196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

Query: 608 PSSTQLQSFGASSFAG 623
              T  +     +F G
Sbjct: 256 FGHTNFKDPDNFTFKG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 2e-19
 Identities = 58/321 (18%), Positives = 108/321 (33%), Gaps = 81/321 (25%)

Query: 302 GPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS---KNNFSGDIPDCWMNWLRLRALN 358
              F LS N+   +I        +  +  E   L    +N     + +C +N  +   L 
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQ 65

Query: 359 LGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS 418
           L   N + SLP ++     +  L +  N L   +P    +   LE LD  +N L  ++P 
Sbjct: 66  LNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPE 117

Query: 419 WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAIT 478
                   LK L++ +N+     P     L   + ++  +N L+  +P    +L      
Sbjct: 118 LPAS----LKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPTSL------ 162

Query: 479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVE 538
                                                        + V  N  +  +P  
Sbjct: 163 -------------------------------------------EVLSVRNNQLT-FLP-- 176

Query: 539 VTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIES----LDLSANQLSGQIPQSMSNLSFLN 594
               + L++L++S NLL   +P         E          N+++  IP+++ +L    
Sbjct: 177 -ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTC 233

Query: 595 HLNLSNNNLVGKIPSSTQLQS 615
            + L +N L  +I  S   Q+
Sbjct: 234 TIILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.5 bits (149), Expect = 6e-10
 Identities = 47/285 (16%), Positives = 89/285 (31%), Gaps = 44/285 (15%)

Query: 131 SQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHF 190
           S  +    +   ++++      +       +      I+    L L+   L+ ++ +   
Sbjct: 23  SGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS-SLPDNLP 79

Query: 191 VNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDIS 250
             +T L       N+L     P    P  L  L+     L    P    S   L  LD+ 
Sbjct: 80  PQITVL---EITQNAL--ISLPEL--PASLEYLDACDNRLS-TLPELPAS---LKHLDVD 128

Query: 251 STRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNN 310
           + +++  +P           Y+N   NQ+   +P        L T+   L      + NN
Sbjct: 129 NNQLTM-LP----ELPALLEYINADNNQL-TMLP-------ELPTSLEVL-----SVRNN 170

Query: 311 ALSGSIFHLICQGENFSNNIEFLKLSKNNFSG---DIPDCWMNWLRLRALNLGHNNFTGS 367
            L+  +  L         ++E L +S N              +           N  T  
Sbjct: 171 QLT-FLPELP-------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-H 221

Query: 368 LPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
           +P +I +L    ++ L +N LS  I  S    ++           
Sbjct: 222 IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.1 bits (148), Expect = 7e-10
 Identities = 71/421 (16%), Positives = 130/421 (30%), Gaps = 60/421 (14%)

Query: 10  IPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSI 69
           I   + N  SL   +   N ++ T   + S  +  E  ++        VS L    +   
Sbjct: 3   IMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 70  KRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLG 129
             L L+  + L   +P +     ++T   +    L   + E+           LE L   
Sbjct: 62  SELQLNRLN-L-SSLPDNLPP--QITVLEITQNALIS-LPELPA--------SLEYLDAC 108

Query: 130 SSQIFGHLTNQLRR----FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTV 185
                    N+L         L  LD+ N  L   +P      + LEY++  NN+L    
Sbjct: 109 D--------NRLSTLPELPASLKHLDVDNNQLT-MLP---ELPALLEYINADNNQLTMLP 156

Query: 186 SEIHFVNLTKLAFFRANGNSLIFKINPNWVP--PFQLTVLELRSCHLG--PRFPLWLQSQ 241
                 +L  L       N L       ++P  P  L  L++ +  L   P  P+     
Sbjct: 157 ELPT--SLEVL---SVRNNQL------TFLPELPESLEALDVSTNLLESLPAVPVRNHHS 205

Query: 242 RELN-DLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL 300
            E          RI+  IP    + +     + +  N     +      S+   T   D 
Sbjct: 206 EETEIFFRCRENRITH-IPENILS-LDPTCTIILEDNP----LSSRIRESLSQQTAQPDY 259

Query: 301 LGPIFDLSNNALSGSIFHLI---CQGENFSNNIEFLKLSKNNFSGDIPD-----CWMNWL 352
            GP    S +    +  H          F  N +       +             +++ L
Sbjct: 260 HGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRL 319

Query: 353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
                    + F   +   +  LS+   L  ++  ++     S ++  +L   +L +  L
Sbjct: 320 SDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

Query: 413 V 413
           V
Sbjct: 380 V 380

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 4e-09
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 44/247 (17%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNS--TVLGWLSKVNDLEFLSVYSNRLQGNV 58
           ++ N     +P    +L    YLD   N L++   +         L+ L V +N+L    
Sbjct: 87  ITQNALI-SLPELPASLE---YLDACDNRLSTLPELPA------SLKHLDVDNNQL---- 132

Query: 59  SSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDIS--EILGIFS 116
           + L  E    ++ +    N +L   +P     L  L+  + + T L +     E L + +
Sbjct: 133 TMLP-ELPALLEYINADNN-QL-TMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVST 189

Query: 117 ACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL 176
               N LESL      +     +     +           +   IP ++  +     + L
Sbjct: 190 ----NLLESL----PAVPVRNHHSE---ETEIFFRCRENRI-THIPENILSLDPTCTIIL 237

Query: 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 236
            +N L+           +++    +   +      P                 L      
Sbjct: 238 EDNPLS-----------SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

Query: 237 WLQSQRE 243
           W    ++
Sbjct: 287 WFPENKQ 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.0 bits (223), Expect = 7e-19
 Identities = 59/316 (18%), Positives = 100/316 (31%), Gaps = 37/316 (11%)

Query: 289 PSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFS-NNIEFLKLSKNNFSGDIPDC 347
           P  P        L       +  +      +    E+ + NN + +    +         
Sbjct: 11  PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 70

Query: 348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL 407
             ++ ++  LNL           +     ++  L +  N +  + P  F+N   L VL L
Sbjct: 71  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130

Query: 408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
             N+L  S+P  I      L  L++ +N               LQ L ++SN L+     
Sbjct: 131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189

Query: 468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVS 527
            I +L                                  +   L+   +I   V  +D S
Sbjct: 190 LIPSLF------------------------------HANVSYNLLSTLAIPIAVEELDAS 219

Query: 528 KNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM 587
            N  +  +   V     L  L L HN LT      +     +  +DLS N+L   +    
Sbjct: 220 HNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 588 SNLSFLNHLNLSNNNL 603
             +  L  L +SNN L
Sbjct: 275 VKMQRLERLYISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.8 bits (220), Expect = 2e-18
 Identities = 62/308 (20%), Positives = 112/308 (36%), Gaps = 62/308 (20%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
           +L++  +   I         F+    I+ L +  N      P  + N   L  L L  N+
Sbjct: 81  NLNDLQIE-EI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134

Query: 364 FTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGE 422
            + SLP  I      L +L++ NN L  I   +F+  +SL+ L L  N L   +      
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---S 189

Query: 423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN------NLSAMA 476
               L   N+  N         L     ++ LD + NS++  +   +N       L    
Sbjct: 190 LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNN 243

Query: 477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIP 536
           +TD+        + L +                           +  +D+S N    +I 
Sbjct: 244 LTDT--------AWLLN------------------------YPGLVEVDLSYNELE-KIM 270

Query: 537 VEV-TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNH 595
                 +Q L+ L +S+N L   +      + +++ LDLS N L   + ++      L +
Sbjct: 271 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

Query: 596 LNLSNNNL 603
           L L +N++
Sbjct: 329 LYLDHNSI 336

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 5e-18
 Identities = 80/515 (15%), Positives = 158/515 (30%), Gaps = 54/515 (10%)

Query: 42  NDLEFLSVYSNRLQGNVS-SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR 100
            D  F  V+ +    +V        L + K +    +  +            ++   ++ 
Sbjct: 25  YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLN 83

Query: 101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGS 160
             ++  +I      F+    + ++ L +G + I     +  +    L  L L    L   
Sbjct: 84  DLQIE-EIDT--YAFAYA--HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 161 IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQL 220
                     L  L +SNN L   + +  F   T L   + + N L   ++ + +P   L
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP--SL 194

Query: 221 TVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIY 280
               +    L       L     + +LD S   I+  +       +     L +  N + 
Sbjct: 195 FHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELT---ILKLQHNNL- 244

Query: 281 GGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKN 338
                  N   P +           DLS N L   I         F     +E L +S N
Sbjct: 245 TDTAWLLN--YPGLVE--------VDLSYNELE-KI-----MYHPFVKMQRLERLYISNN 288

Query: 339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKN 398
                +         L+ L+L HN+    +  +      L +L L +N +  +       
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLST 343

Query: 399 FSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVAS 458
             +L+ L L  N+   +    +   F  +    +     H     QL             
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRAL---FRNVARPAVDDADQHCKIDYQLEHGL------CCK 394

Query: 459 NSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSIL 518
            S    + R +  ++  ++ +   +A    S+  +    +          GV ++ N  L
Sbjct: 395 ESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQL 454

Query: 519 NL-VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSH 552
              V  +       + E   +   LQGL +   ++
Sbjct: 455 EAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTN 489

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 82.3 bits (203), Expect = 2e-16
 Identities = 85/611 (13%), Positives = 189/611 (30%), Gaps = 102/611 (16%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
              +  +    + L +   ++ L+L+  ++        +  + ++ L +  N ++  +  
Sbjct: 58  FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPP 116

Query: 61  LGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
              +N+  +  L L  N      +       F    KLT+ SM    L + I +    F 
Sbjct: 117 HVFQNVPLLTVLVLERN-----DLSSLPRGIFHNTPKLTTLSMSNNNLER-IED--DTFQ 168

Query: 117 ACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL 176
           A  +  L++L+L S+++       L     L   ++S  +L      +L     +E LD 
Sbjct: 169 ATTS--LQNLQLSSNRL---THVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDA 218

Query: 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 236
           S+N +N  V     V LT L   +   N+L                              
Sbjct: 219 SHNSIN-VVRGPVNVELTIL---KLQHNNLT---------------------DTA----- 248

Query: 237 WLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITT 296
           WL +   L ++D+S   +  KI    +  + +   L IS N++                 
Sbjct: 249 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL----------------- 290

Query: 297 PSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRA 356
                         AL+     +          ++ L LS N+    +      + RL  
Sbjct: 291 -------------VALNLYGQPI--------PTLKVLDLSHNHLL-HVERNQPQFDRLEN 328

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
           L L HN+   +L   + T  +L +L L +N        +   F ++    + + +    I
Sbjct: 329 LYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKI 383

Query: 417 PSWIGERFSILKILNLRSNKF--HGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA 474
              +       +      ++   +      +  +   Q    A+++++            
Sbjct: 384 DYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQ 443

Query: 475 MAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
             +    ++ +    +       ++  +     + +   +  I   +R   + K+  +  
Sbjct: 444 GGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARS 503

Query: 535 IPVEVTNLQGLQSLNLSHNLLT-GRIPDNIGVMRSIESLDLSANQLSGQIPQ-SMSNLSF 592
                     L+         T  R  +     +  E L+     L  Q+          
Sbjct: 504 SDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563

Query: 593 LNHLNLSNNNL 603
               +L    +
Sbjct: 564 RQETSLKRQKV 574

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 68/332 (20%), Positives = 130/332 (39%), Gaps = 69/332 (20%)

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT 365
           ++  + L+     L    +    +I  L +  NN +  +P        LR L +  N  T
Sbjct: 46  NVGESGLT----TLP---DCLPAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLT 94

Query: 366 GSLPMSIGTL-----------------SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408
            SLP+    L                 S L  L +  N L+ + P        L+ L + 
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSL-PVLPPG---LQELSVS 149

Query: 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRC 468
           +N+L  S+P+   E    L  L   +N+     P+   GL   Q L V+ N L+ ++P  
Sbjct: 150 DNQL-ASLPALPSE----LCKLWAYNNQLT-SLPMLPSGL---QELSVSDNQLA-SLPTL 199

Query: 469 INNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL------VR 522
            + L  +   ++        +SL +             +K ++V  N + +L      ++
Sbjct: 200 PSELYKLWAYNN------RLTSLPALPSG---------LKELIVSGNRLTSLPVLPSELK 244

Query: 523 SIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQ 582
            + VS N  +  +P+      GL SL++  N LT R+P+++  + S  +++L  N LS +
Sbjct: 245 ELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299

Query: 583 IPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQ 614
             Q++  ++     +           S+ +  
Sbjct: 300 TLQALREITSAPGYSGPIIRFDMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.1 bits (213), Expect = 1e-17
 Identities = 53/293 (18%), Positives = 89/293 (30%), Gaps = 82/293 (27%)

Query: 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI 387
           N    L + ++  +  +PDC    +    L +  NN T SLP        L +L +  N 
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPAHIT--TLVIPDNNLT-SLPALPP---ELRTLEVSGNQ 92

Query: 388 LSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG 447
           L+  +P        L +       L              L  L +  N+     P+   G
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALPSG--------LCKLWIFGNQLT-SLPVLPPG 142

Query: 448 LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVM 507
           L   Q L V+ N L+ ++P   + L                                   
Sbjct: 143 L---QELSVSDNQLA-SLPALPSEL----------------------------------- 163

Query: 508 KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR 567
                           +    N  +  +P+  + LQ    L++S N L   +P       
Sbjct: 164 --------------CKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPS--- 201

Query: 568 SIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASS 620
            +  L    N+L+  +P   S L     L +S N L       ++L+    S 
Sbjct: 202 ELYKLWAYNNRLT-SLPALPSGLK---ELIVSGNRLTSLPVLPSELKELMVSG 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 82/456 (17%), Positives = 136/456 (29%), Gaps = 140/456 (30%)

Query: 169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSC 228
           +    L++  + L  T+ +    ++T L     N  SL     P   P  +L  LE+   
Sbjct: 40  NGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSL-----PALPP--ELRTLEVSGN 91

Query: 229 HLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDN 288
            L    P+      EL+      T + A +P G          L I GNQ+   +P    
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPA-LPSGL-------CKLWIFGNQL-TSLP---- 137

Query: 289 PSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW 348
               L     +L      +S+N L+ S+  L          +  L    N  +  +P   
Sbjct: 138 ---VLPPGLQEL-----SVSDNQLA-SLPALPS-------ELCKLWAYNNQLT-SLPMLP 180

Query: 349 MNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG 408
                L+ L++  N    SLP     L  L + N R   L  +        S L+ L + 
Sbjct: 181 SG---LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALP-------SGLKELIVS 229

Query: 409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRC 468
            N L  S+P    E                            L+ L V+ N L+ ++P  
Sbjct: 230 GNRL-TSLPVLPSE----------------------------LKELMVSGNRLT-SLPML 259

Query: 469 INNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSK 528
            + L                                                  S+ V +
Sbjct: 260 PSGL-------------------------------------------------LSLSVYR 270

Query: 529 NIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS------GQ 582
           N  +  +P  + +L    ++NL  N L+ R       +R I S    +  +         
Sbjct: 271 NQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA---LREITSAPGYSGPIIRFDMAGAS 326

Query: 583 IPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGA 618
            P+    L       L      G+   + +   FG 
Sbjct: 327 APRETRALHLAAADWLVPARE-GEPAPADRWHMFGQ 361

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 5e-13
 Identities = 52/273 (19%), Positives = 88/273 (32%), Gaps = 45/273 (16%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           +SGNQ    +P     L  L         L   +         L  L ++ N+L    +S
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHL-PALPS------GLCKLWIFGNQL----TS 135

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           L       ++ L +S+N      +P    +LCKL +++ + T L    S           
Sbjct: 136 LP-VLPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTSLPMLPS----------- 181

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
             L+ L +  +Q+   L        +L + +   T L           S L+ L +S N+
Sbjct: 182 -GLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPAL-------PSGLKELIVSGNR 232

Query: 181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQS 240
           L           L +L     +GN L     P       L  L +    L  R P  L  
Sbjct: 233 LTSLPVLPS--ELKEL---MVSGNRL--TSLPMLPS--GLLSLSVYRNQLT-RLPESLIH 282

Query: 241 QRELNDLDISSTRISAKIPRGFWNSIYQYFYLN 273
                 +++    +S +  +          Y  
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 5e-13
 Identities = 71/376 (18%), Positives = 120/376 (31%), Gaps = 68/376 (18%)

Query: 107 DISEILGIFSACVANELESLRLGSSQ-------IFGHLT------NQLRR----FKRLNS 149
             + ++    AC+ N    L +G S        +  H+T      N L         L +
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRT 85

Query: 150 LDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFK 209
           L++S   L  S+P     +  L         L    S      L KL  F     SL   
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPS-----GLCKLWIFGNQLTSL--- 136

Query: 210 INPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQY 269
             P   P   L  L +    L    P        L  L   + ++++ +P          
Sbjct: 137 --PVLPP--GLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTS-LP----MLPSGL 183

Query: 270 FYLNISGNQIYGGIPK----------FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHL 319
             L++S NQ+   +P           ++N    L   PS L      +S N L+ S+  L
Sbjct: 184 QELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLK--ELIVSGNRLT-SLPVL 239

Query: 320 ICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL 379
                     ++ L +S N  +  +P        L +L++  N  T  LP S+  LSS  
Sbjct: 240 PS-------ELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSET 287

Query: 380 SLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHG 439
           ++NL  N LS     + +  +S             +  S   E  +   +    ++    
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA---LHLAAADWLVP 344

Query: 440 DFPIQLCGLAFLQILD 455
               +        +  
Sbjct: 345 AREGEPAPADRWHMFG 360

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.6 bits (204), Expect = 3e-17
 Identities = 60/313 (19%), Positives = 103/313 (32%), Gaps = 34/313 (10%)

Query: 303 PIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHN 362
           P +  + N L  +   L   G +       LK              +  L L+ L +   
Sbjct: 22  PDWSSAFNCLGAADVELYGGGRSL---EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAA 78

Query: 363 NFTGSLP---MSIGTLSSLLSLNLRNNILSGIIPTSFKNFS--SLEVLDLGENELVGSIP 417
                +    + +  +S L  L L N  ++G  P      +   L +L+L          
Sbjct: 79  RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RD 137

Query: 418 SWIGERFSI----LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
           +W+ E        LK+L++           Q+     L  LD++ N   G        L 
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG-----LI 192

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
           +      +    +L  +LR+ G        S +              ++ +D+S N    
Sbjct: 193 SALCPLKFPTLQVL--ALRNAGMETPSGVCSALAAA--------RVQLQGLDLSHNSLRD 242

Query: 534 EIPVEV-TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
                       L SLNLS   L  ++P  +     +  LDLS N+L    P S   L  
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NP-SPDELPQ 297

Query: 593 LNHLNLSNNNLVG 605
           + +L+L  N  + 
Sbjct: 298 VGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 2e-14
 Identities = 44/275 (16%), Positives = 80/275 (29%), Gaps = 21/275 (7%)

Query: 150 LDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNG--TVSEIHFVNLTKLAFFRANGNSLI 207
           L   +T  D      + +  +L+ L +   ++        +  + ++ L         + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 208 FKINPNWVPPF--QLTVLELRSCHLGPRFPLWLQSQRELN----DLDISSTRISAKIPRG 261
               P  +      L +L LR+     R     + Q+ L      L I+           
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCE 167

Query: 262 FWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLIC 321
                     L++S N   G              T   L      L N  +  +   +  
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL-----ALRNAGME-TPSGVCS 221

Query: 322 QGENFSNNIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTGSLPMSIGTLSSLLS 380
                   ++ L LS N+          +W  +L +LNL        +P  +   + L  
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSV 278

Query: 381 LNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415
           L+L  N L      S      +  L L  N  + S
Sbjct: 279 LDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 43/250 (17%), Positives = 79/250 (31%), Gaps = 18/250 (7%)

Query: 16  NLTSLKYLDLSSNELNSTVLGWLSKVND---LEFLSVYSNRLQGNV-SSLGLENLTSIKR 71
              SLK L + +  + S +L    +V     L+ L++ +  + G     L       +  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 72  LYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSS 131
           L L               +L +     ++   ++Q  S         V   L +L L  +
Sbjct: 126 LNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN 183

Query: 132 QIFGHLT-------NQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGT 184
              G           +    + L   +       G           L+ LDLS+N L   
Sbjct: 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

Query: 185 VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQREL 244
                    ++L     +   L  K  P  +P  +L+VL+L    L  R P   +  + +
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGL--KQVPKGLPA-KLSVLDLSYNRLD-RNPSPDELPQ-V 298

Query: 245 NDLDISSTRI 254
            +L +     
Sbjct: 299 GNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 32/223 (14%), Positives = 74/223 (33%), Gaps = 26/223 (11%)

Query: 401 SLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP---IQLCGLAFLQILDVA 457
           SLE L    +            +   LK L +R+ +         +++ G++ LQ L + 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 458 SNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI 517
           +  ++GT P  +   +   +       ++   ++    +     +              +
Sbjct: 104 NLEVTGTAPPPLLEATGPDLN------ILNLRNVSWATRDAWLAEL----------QQWL 147

Query: 518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI----GVMRSIESLD 573
              ++ + +++         +V     L +L+LS N   G              +++ L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 574 LSANQ---LSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQL 613
           L        SG      +    L  L+LS+N+L     + +  
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 8e-07
 Identities = 33/198 (16%), Positives = 53/198 (26%), Gaps = 54/198 (27%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           ++          ++    +L  LDLS N                          +G +S+
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE---------------------RGLISA 194

Query: 61  LGLENLTSIKRLYLSEN--DELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
           L      +++ L L     +   G          +L    +    L              
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS------ 248

Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178
                              +        LNSL+LS T L   +P  L     L  LDLS 
Sbjct: 249 ---------------CDWPSQ-------LNSLNLSFTGLK-QVPKGLPA--KLSVLDLSY 283

Query: 179 NKLNGTVSEIHFVNLTKL 196
           N+L+   S      +  L
Sbjct: 284 NRLDRNPSPDELPQVGNL 301

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 40/260 (15%), Positives = 73/260 (28%), Gaps = 33/260 (12%)

Query: 123 LESLRLGSSQIFGHLTNQLRRF---KRLNSLDLSNTILDGSIPFSLGQIS--NLEYLDLS 177
           L+ L + +++I   +     R      L  L L N  + G+ P  L + +  +L  L+L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 178 NNKLNGT---VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRF 234
           N         ++E+       L          +            L+ L+L         
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189

Query: 235 PLW-------LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFD 287
            L          + + L   +      S            Q   L++S N +        
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAPS 248

Query: 288 NPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDC 347
                 + +         +LS   L   +       +     +  L LS N      P  
Sbjct: 249 CDWPSQLNS--------LNLSFTGLK-QVP------KGLPAKLSVLDLSYNRLDR-NPSP 292

Query: 348 WMNWLRLRALNLGHNNFTGS 367
                ++  L+L  N F  S
Sbjct: 293 D-ELPQVGNLSLKGNPFLDS 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.0 bits (203), Expect = 5e-17
 Identities = 60/303 (19%), Positives = 102/303 (33%), Gaps = 33/303 (10%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
                 LDL N  +          + NL  L L NNK++  +S   F  L KL     + 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI-SAKIPRGF 262
           N L  K  P  +P   L  L +    +            ++  +++ +  + S+ I  G 
Sbjct: 110 NQL--KELPEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 263 WNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ 322
           +  + +  Y+ I+   I   IP+           P  L      L  N ++  +      
Sbjct: 167 FQGMKKLSYIRIADTNI-TTIPQ---------GLPPSLT--ELHLDGNKIT-KV-----D 208

Query: 323 GENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLS 380
             +     N+  L LS N+ S        N   LR L+L +N     +P  +     +  
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 381 LNLRNNILSGIIPTSF------KNFSSLEVLDLGENEL-VGSIPSWIGERFSILKILNLR 433
           + L NN +S I    F         +S   + L  N +    I         +   + L 
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 434 SNK 436
           + K
Sbjct: 328 NYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 48/254 (18%), Positives = 93/254 (36%), Gaps = 36/254 (14%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
              L+L +N  T         L +L +L L NN +S I P +F     LE L L +N+L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI--PRCINN 471
             +P    +    L+ L +  N+          GL  + ++++ +N L  +         
Sbjct: 114 -ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 472 LSAMAITDSYDQAVILYSSLRSEGQSEIFED-ASLVMKGVLVEYNSILNLVRSIDVSKNI 530
           +  +         + +  +  +     +      L +     + N I        V    
Sbjct: 170 MKKL-------SYIRIADTNITTIPQGLPPSLTELHL-----DGNKITK------VDAAS 211

Query: 531 FSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSN 589
             G        L  L  L LS N ++  + +        +  L L+ N+L  ++P  +++
Sbjct: 212 LKG--------LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261

Query: 590 LSFLNHLNLSNNNL 603
             ++  + L NNN+
Sbjct: 262 HKYIQVVYLHNNNI 275

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 56/316 (17%), Positives = 108/316 (34%), Gaps = 69/316 (21%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
           DL NN ++  I     +  +F N  N+  L L  N  S   P  +   ++L  L L  N 
Sbjct: 58  DLQNNKIT-EI-----KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL-VGSIPSWIGE 422
               LP       +L  L +  N ++ +  + F   + + V++LG N L    I +   +
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482
               L  + +          I       L  L +  N ++      +  L+         
Sbjct: 169 GMKKLSYIRIADTNITT---IPQGLPPSLTELHLDGNKITKVDAASLKGLN--------- 216

Query: 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNL 542
                  +L             L +           N + ++D      +        N 
Sbjct: 217 -------NLAK-----------LGLSF---------NSISAVD--NGSLA--------NT 239

Query: 543 QGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG------QIPQSMSNLSFLNHL 596
             L+ L+L++N L  ++P  +   + I+ + L  N +S         P   +  +  + +
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 597 NLSNNNL-VGKIPSST 611
           +L +N +   +I  ST
Sbjct: 299 SLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.7 bits (179), Expect = 6e-14
 Identities = 53/289 (18%), Positives = 102/289 (35%), Gaps = 52/289 (17%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N+          NL +L  L L +N+++    G  + +  LE L +  N+L      
Sbjct: 59  LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL----KE 114

Query: 61  LGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
           L  +   +++ L + EN     +I     + F  L ++    +                 
Sbjct: 115 LPEKMPKTLQELRVHEN-----EITKVRKSVFNGLNQMIVVELG---------------- 153

Query: 117 ACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL 176
               N L+S  +  +  F  +         L+ + +++T +  +IP  L    +L  L L
Sbjct: 154 ---TNPLKSSGI-ENGAFQGMKK-------LSYIRIADTNIT-TIPQGL--PPSLTELHL 199

Query: 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPN-WVPPFQLTVLELRSCHLGPRFP 235
             NK+   V       L  LA    + NS+   ++         L  L L +  L  + P
Sbjct: 200 DGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVP 256

Query: 236 LWLQSQRELNDLDISSTRIS-----AKIPRGFWNSIYQYFYLNISGNQI 279
             L   + +  + + +  IS        P G+      Y  +++  N +
Sbjct: 257 GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 62/349 (17%), Positives = 114/349 (32%), Gaps = 93/349 (26%)

Query: 271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN-- 328
            L++  N+I   I   D  ++  + T          L NN +S  I         F+   
Sbjct: 56  LLDLQNNKI-TEIKDGDFKNLKNLHT--------LILINNKIS-KI-----SPGAFAPLV 100

Query: 329 NIEFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI 387
            +E L LSKN    ++P+      + L+ L +  N  T         L+ ++ + L  N 
Sbjct: 101 KLERLYLSKNQLK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156

Query: 388 L--SGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH----GDF 441
           L  SGI   +F+    L  + + +  +  +IP  +      L  L+L  NK         
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASL 212

Query: 442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFE 501
                GL  L  L ++ NS+S      + N   +                          
Sbjct: 213 K----GLNNLAKLGLSFNSISAVDNGSLANTPHL-------------------------- 242

Query: 502 DASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561
                               R + ++ N    ++P  + + + +Q + L +N ++  I  
Sbjct: 243 --------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS 280

Query: 562 N-------IGVMRSIESLDLSANQLS-GQIPQSM-SNLSFLNHLNLSNN 601
           N            S   + L +N +   +I  S    +     + L N 
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 4e-12
 Identities = 49/250 (19%), Positives = 105/250 (42%), Gaps = 28/250 (11%)

Query: 217 PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
           P    +L+L++  +        ++ + L+ L + + +IS KI  G +  + +   L +S 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 277 NQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLK 334
           NQ+   +P+           P  L      +  N ++  +     +   F+    +  ++
Sbjct: 110 NQLKE-LPEK---------MPKTL--QELRVHENEIT-KV-----RKSVFNGLNQMIVVE 151

Query: 335 LSKNNF-SGDIPDCWMNWL-RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGII 392
           L  N   S  I +     + +L  + +   N T ++P   G   SL  L+L  N ++ + 
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVD 208

Query: 393 PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQ 452
             S K  ++L  L L  N +  ++ +        L+ L+L +NK     P  L    ++Q
Sbjct: 209 AASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266

Query: 453 ILDVASNSLS 462
           ++ + +N++S
Sbjct: 267 VVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 42/215 (19%), Positives = 82/215 (38%), Gaps = 30/215 (13%)

Query: 401 SLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS 460
            L V+   +  L   +P  +        +L+L++NK           L  L  L + +N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 461 LSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI--- 517
           +S   P     L  +       + + L  +   E   ++    +L  + + V  N I   
Sbjct: 88  ISKISPGAFAPLVKL-------ERLYLSKNQLKELPEKMP--KTL--QELRVHENEITKV 136

Query: 518 -------LNLVRSIDVSKN-IFSGEIPVEV-TNLQGLQSLNLSHNLLTGRIPDNIGVMRS 568
                  LN +  +++  N + S  I       ++ L  + ++   +T  IP   G+  S
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPS 193

Query: 569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
           +  L L  N+++     S+  L+ L  L LS N++
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 228

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 44/252 (17%), Positives = 78/252 (30%), Gaps = 82/252 (32%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           LR +          +P  +        L+L+NN ++ I    FKN  +L  L L  N   
Sbjct: 33  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINN--- 86

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
                         KI  +    F          L  L+ L ++ N L   +P       
Sbjct: 87  --------------KISKISPGAFAP--------LVKLERLYLSKNQLK-ELPEK----- 118

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
                        +  +L+                 + V  N I  +       K++F+G
Sbjct: 119 -------------MPKTLQE----------------LRVHENEITKV------RKSVFNG 143

Query: 534 EIPVEVTNLQGLQSLNLSHNLLT-GRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLS 591
                   L  +  + L  N L    I +     M+ +  + ++   ++  IPQ +    
Sbjct: 144 --------LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PP 192

Query: 592 FLNHLNLSNNNL 603
            L  L+L  N +
Sbjct: 193 SLTELHLDGNKI 204

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
               L+L +N +T     +   ++++ +L L  N++S   P + + L  L  L LS N L
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 604 VGKIPSST 611
             ++P   
Sbjct: 113 K-ELPEKM 119

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 7e-17
 Identities = 49/252 (19%), Positives = 88/252 (34%), Gaps = 33/252 (13%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
              L+L +N+ +         L  L +L L NN +S I   +F     L+ L + +N LV
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
             IP       S L  L +  N+          GL  +  +++  N L  +         
Sbjct: 116 -EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS------GFE 165

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
             A        + +  +  +    ++    +L                  + +  N    
Sbjct: 166 PGAFDGLKLNYLRISEAKLTGIPKDLP--ETL----------------NELHLDHNKIQ- 206

Query: 534 EIPVEV-TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLS 591
            I +E       L  L L HN +   I +     + ++  L L  N+LS ++P  + +L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 592 FLNHLNLSNNNL 603
            L  + L  NN+
Sbjct: 265 LLQVVYLHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 52/308 (16%), Positives = 104/308 (33%), Gaps = 71/308 (23%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
           DL NN +S  +     + ++F    ++  L L  N  S      +    +L+ L +  N+
Sbjct: 60  DLQNNDIS-EL-----RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL-VGSIPSWIGE 422
               +P      SSL+ L + +N +  +    F    ++  +++G N L          +
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482
               L  L +   K  G   I       L  L +  N +       +   S         
Sbjct: 171 GLK-LNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQAIELEDLLRYS--------- 217

Query: 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNL 542
                   L             L +           N +R I+      S         L
Sbjct: 218 -------KLYR-----------LGLGH---------NQIRMIE--NGSLS--------FL 240

Query: 543 QGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM-------SNLSFLNH 595
             L+ L+L +N L+ R+P  +  ++ ++ + L  N ++ ++  +           ++ N 
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNG 298

Query: 596 LNLSNNNL 603
           ++L NN +
Sbjct: 299 ISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 64/340 (18%), Positives = 120/340 (35%), Gaps = 62/340 (18%)

Query: 147 LNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
           L  +  S+  L  ++P  +    +   LDL NN ++  + +  F  L  L       N  
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-- 88

Query: 207 IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSI 266
                       +++ +  ++              R+L  L IS   +   IP    +S+
Sbjct: 89  ------------KISKIHEKA----------FSPLRKLQKLYISKNHLVE-IPPNLPSSL 125

Query: 267 YQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENF 326
            +   L I  N+I   +PK     +  +           ++  N L  S F    +   F
Sbjct: 126 VE---LRIHDNRIRK-VPKGVFSGLRNMNC--------IEMGGNPLENSGF----EPGAF 169

Query: 327 SN-NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRN 385
               + +L++S+   +  IP        L  L+L HN         +   S L  L L +
Sbjct: 170 DGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 386 NILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH----GDF 441
           N +  I   S     +L  L L  N+L   +P+ +     +L+++ L +N        DF
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDF 284

Query: 442 P--IQLCGLAFLQILDVASNSLS-GTIP----RCINNLSA 474
                    A+   + + +N +    +     RC+ +  A
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 51/290 (17%), Positives = 91/290 (31%), Gaps = 55/290 (18%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N            L  L  L L +N+++       S +  L+ L +  N L      
Sbjct: 61  LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL----VE 116

Query: 61  LGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
           +     +S+  L + +N     +I       F  L  +    M    L     E  G F 
Sbjct: 117 IPPNLPSSLVELRIHDN-----RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP-GAFD 170

Query: 117 ACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP-FSLGQISNLEYLD 175
                +L  LR+  +++   +   L   + LN L L +  +  +I    L + S L  L 
Sbjct: 171 GL---KLNYLRISEAKL-TGIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLG 223

Query: 176 LSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFP 235
           L +N++   +       L  L     + N L                          R P
Sbjct: 224 LGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-------------------------RVP 257

Query: 236 LWLQSQRELNDLDISSTRISAKIPRG------FWNSIYQYFYLNISGNQI 279
             L   + L  + + +  I+ K+         F      Y  +++  N +
Sbjct: 258 AGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 50/286 (17%), Positives = 100/286 (34%), Gaps = 41/286 (14%)

Query: 139 NQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAF 198
           +  +  + L +L L N  +      +   +  L+ L +S N L   +      +L +L  
Sbjct: 72  DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVEL-- 128

Query: 199 FRANGNSLIFKINPNWVPPF-QLTVLELRSCHLGPRF--PLWLQSQRELNDLDISSTRIS 255
            R + N  I K+          +  +E+    L      P      + LN L IS  +++
Sbjct: 129 -RIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT 185

Query: 256 AKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGS 315
             IP+    ++ +   L++  N+I   I   D      +            L +N +   
Sbjct: 186 -GIPKDLPETLNE---LHLDHNKI-QAIELEDLLRYSKLYR--------LGLGHNQIR-M 231

Query: 316 IFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSI- 372
           I     +  + S    +  L L  N  S  +P    +   L+ + L  NN T  + ++  
Sbjct: 232 I-----ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDF 284

Query: 373 ------GTLSSLLSLNLRNNILS--GIIPTSFKNFSSLEVLDLGEN 410
                    +    ++L NN +    + P +F+  +    +  G  
Sbjct: 285 CPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 50/259 (19%), Positives = 77/259 (29%), Gaps = 82/259 (31%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           LR +         ++P  I        L+L+NN +S +    FK    L  L L  N   
Sbjct: 35  LRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN--- 88

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
                         KI  +    F          L  LQ L ++ N L   IP       
Sbjct: 89  --------------KISKIHEKAFSP--------LRKLQKLYISKNHLV-EIPP------ 119

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
                        L SSL                  + +  N I  +       K +FSG
Sbjct: 120 ------------NLPSSLVE----------------LRIHDNRIRKV------PKGVFSG 145

Query: 534 EIPVEVTNLQGLQSLNLSHNLLT-GRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
                   L+ +  + +  N L              +  L +S  +L+  IP+ +     
Sbjct: 146 --------LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PET 194

Query: 593 LNHLNLSNNNLVGKIPSST 611
           LN L+L +N +   I    
Sbjct: 195 LNELHLDHNKIQ-AIELED 212

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 30/183 (16%), Positives = 59/183 (32%), Gaps = 54/183 (29%)

Query: 1   LSGNQFQGQIPSR-LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           L  N+ Q  I    L   + L  L L  N++     G LS +  L  L + +N+L   V 
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
           + GL +L  ++ +YL  N                             +I+++        
Sbjct: 258 A-GLPDLKLLQVVYLHTN-----------------------------NITKV-------- 279

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQ-ISNLEYLDLS 177
                         F  +   + +    N + L  N +    +  +  + +++   +   
Sbjct: 280 ----------GVNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 178 NNK 180
           N K
Sbjct: 329 NYK 331

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 57/251 (22%), Positives = 89/251 (35%), Gaps = 48/251 (19%)

Query: 353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
             R LNL  NN       +   L  L  L L  N +  I   +F   +SL  L+L +N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 413 VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNL 472
              IPS   E  S L+ L LR+N            +  L  LD+               L
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL----------KKL 184

Query: 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS 532
             +                        FE                L  ++ +++      
Sbjct: 185 EYI--------------------SEGAFEG---------------LFNLKYLNLGMCNIK 209

Query: 533 GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
            ++P  +T L GL+ L +S N      P +   + S++ L +  +Q+S     +   L+ 
Sbjct: 210 -DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267

Query: 593 LNHLNLSNNNL 603
           L  LNL++NNL
Sbjct: 268 LVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 41/207 (19%), Positives = 77/207 (37%), Gaps = 11/207 (5%)

Query: 1   LSGNQFQGQIPSR-LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           L  N  + QI       L SL  L+L  N L     G    ++ L  L + +N ++ ++ 
Sbjct: 106 LGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIP 163

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
           S     + S+ RL L E  +L      +F  L  L   ++    +  D+  +  +     
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVG--- 219

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
              LE L +  +               L  L + N+ +      +   +++L  L+L++N
Sbjct: 220 ---LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSL 206
            L+ ++    F  L  L     + N  
Sbjct: 277 NLS-SLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 56/262 (21%), Positives = 91/262 (34%), Gaps = 36/262 (13%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N  Q        +L  L+ L L  N +    +G  + +  L  L ++ N L   + S
Sbjct: 82  LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPS 140

Query: 61  LGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
              E L+ ++ L+L  N      I      +F ++  L    +   K  + ISE  G F 
Sbjct: 141 GAFEYLSKLRELWLRNN-----PIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFE 193

Query: 117 ACVANELESLRLGSSQI-----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL 171
                 L+ L LG   I        L         L  L++S        P S   +S+L
Sbjct: 194 GLFN--LKYLNLGMCNIKDMPNLTPLVG-------LEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 172 EYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF-QLTVLELRS--- 227
           + L + N++++  +    F  L  L       N+L   +  +   P   L  L L     
Sbjct: 245 KKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPW 302

Query: 228 ---CHLGPRFPLWLQSQRELND 246
              C +      WL+     N 
Sbjct: 303 NCDCDILW-LAWWLREYIPTNS 323

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 54/255 (21%), Positives = 87/255 (34%), Gaps = 27/255 (10%)

Query: 212 PNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFY 271
           P  +P      L L   ++        +    L  L +    I  +I  G +N +     
Sbjct: 70  PQGIPS-NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNT 127

Query: 272 LNISGNQIYGGIPK--FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN- 328
           L +  N +   IP   F+   +  +            L NN +  SI         F+  
Sbjct: 128 LELFDNWL-TVIPSGAFEY--LSKLRE--------LWLRNNPIE-SI-----PSYAFNRV 170

Query: 329 -NIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN 386
            ++  L L +      I +     L  L+ LNLG  N    +P ++  L  L  L +  N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN 228

Query: 387 ILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLC 446
               I P SF   SSL+ L +  +++   I     +  + L  LNL  N           
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 447 GLAFLQILDVASNSL 461
            L +L  L +  N  
Sbjct: 288 PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.9 bits (174), Expect = 5e-13
 Identities = 52/271 (19%), Positives = 99/271 (36%), Gaps = 31/271 (11%)

Query: 146 RLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS 205
           + + +  +   L   +P  +   SN  YL+L  N +   +    F +L  L   +   N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRN- 109

Query: 206 LIFKINPN-WVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWN 264
            I +I    +     L  LEL    L        +   +L +L + +  I   IP   +N
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFN 168

Query: 265 SIYQYFYLNISG-NQIYGGIPK--FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLIC 321
            +     L++    ++   I +  F+   +  +           +L    +   +     
Sbjct: 169 RVPSLMRLDLGELKKL-EYISEGAFEG--LFNLKY--------LNLGMCNIK-DM----- 211

Query: 322 QGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL 379
              N +    +E L++S N+F    P  +     L+ L + ++  +     +   L+SL+
Sbjct: 212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269

Query: 380 SLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410
            LNL +N LS +    F     L  L L  N
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 45/222 (20%), Positives = 73/222 (32%), Gaps = 37/222 (16%)

Query: 399 FSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVAS 458
            +    +      L   +P  I    S  + LNL  N            L  L++L +  
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 459 NSLSGTIPRCINNLSAM--------AITDSYDQAVILYSSLR---------SEGQSEIFE 501
           NS+        N L+++         +T     A    S LR             S  F 
Sbjct: 109 NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168

Query: 502 DASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD 561
               +M+  L E   +  +      S+  F G        L  L+ LNL    +   +P+
Sbjct: 169 RVPSLMRLDLGELKKLEYI------SEGAFEG--------LFNLKYLNLGMCNIK-DMPN 213

Query: 562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
               +  +E L++S N      P S   LS L  L + N+ +
Sbjct: 214 LTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLS 580
           R +++ +N           +L  L+ L L  N +  +I       + S+ +L+L  N L+
Sbjct: 78  RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT 136

Query: 581 GQIPQSM-SNLSFLNHLNLSNNNLVGKIPSST 611
             IP      LS L  L L NN +   IPS  
Sbjct: 137 -VIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
             + LNL  N +     D    +  +E L L  N +      + + L+ LN L L +N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 604 VGKIPSST 611
              IPS  
Sbjct: 136 T-VIPSGA 142

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 56/285 (19%), Positives = 95/285 (33%), Gaps = 53/285 (18%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT--GSLPMSIGTLSSLLSL 381
               ++   L+L  N         +    +L  L+L  N  +  G    S    +SL  L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 382 NLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF 441
           +L  N +   + ++F     LE LD   + L       +      L  L++        F
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFE 501
                GL+ L++L +A NS                                     +IF 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFL------------------------------PDIFT 172

Query: 502 DASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV-TNLQGLQSLNLSHNLLTGRIP 560
           +                NL   +D+S+     ++      +L  LQ LN+SHN     + 
Sbjct: 173 ELR--------------NL-TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLD 215

Query: 561 DNI-GVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNL 603
                 + S++ LD S N +     Q + +  S L  LNL+ N+ 
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 51/251 (20%), Positives = 87/251 (34%), Gaps = 31/251 (12%)

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL-VGS 415
           +       T S+P  I   SS   L L +N L  +    F   + L  L L  N L    
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCI-NNLSA 474
             S      + LK L+L  N           GL  L+ LD   ++L       +  +L  
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 475 MAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
           +   D       +  +      + IF                 L+ +  + ++ N F   
Sbjct: 128 LIYLD-------ISHTHTRVAFNGIFNG---------------LSSLEVLKMAGNSFQEN 165

Query: 535 IPVEV-TNLQGLQSLNLSHNLLTGRIPDNIGV-MRSIESLDLSANQLSGQIPQSMSNLSF 592
              ++ T L+ L  L+LS   L  ++       + S++ L++S N            L+ 
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 593 LNHLNLSNNNL 603
           L  L+ S N++
Sbjct: 225 LQVLDYSLNHI 235

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 57/281 (20%), Positives = 97/281 (34%), Gaps = 36/281 (12%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQ-GNVS 59
            +       +P+ +   +S   L+L SN+L S   G   K+  L  LS+ SN L      
Sbjct: 14  CNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
           S      TS+K L LS N  +   + ++F  L +L     + + L               
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLK-------------- 114

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
                  ++    +F  L N       L  LD+S+T    +       +S+LE L ++ N
Sbjct: 115 -------QMSEFSVFLSLRN-------LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP-FQLTVLELRSCHLGPRFPLWL 238
                     F  L  L F   +    + +++P        L VL +   +         
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219

Query: 239 QSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI 279
           +    L  LD S   I     +   +      +LN++ N  
Sbjct: 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 63/294 (21%), Positives = 105/294 (35%), Gaps = 45/294 (15%)

Query: 148 NSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLI 207
             +  ++  L  S+P  +   S+   L+L +NKL  ++    F  LT+L     + N L 
Sbjct: 10  TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 208 FKINPN--WVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNS 265
           FK   +        L  L+L    +            +L  LD   + +        + S
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 266 IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGEN 325
           +    YL+IS                                 N   +G           
Sbjct: 125 LRNLIYLDISHTHTR-------------------------VAFNGIFNGL---------- 149

Query: 326 FSNNIEFLKLSKNNFSGDI-PDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLR 384
             +++E LK++ N+F  +  PD +     L  L+L         P +  +LSSL  LN+ 
Sbjct: 150 --SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 385 NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH 438
           +N    +    +K  +SL+VLD   N ++ S    +    S L  LNL  N F 
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 54/283 (19%), Positives = 92/283 (32%), Gaps = 63/283 (22%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNN--FSGDIPDCWMNWLRLRALNLGH 361
           +L +N L       +  G  F     +  L LS N   F G           L+ L+L  
Sbjct: 34  ELESNKLQ-----SLPHGV-FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTS-FKNFSSLEVLDLGENELVGSIPSWI 420
           N    ++  +   L  L  L+ +++ L  +   S F +  +L  LD+          + I
Sbjct: 88  NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGI 145

Query: 421 GERFSILKILNLRSNKFHGDFPIQ-LCGLAFLQILDVASNSLSGTIPRCINNLSAMAITD 479
               S L++L +  N F  +F       L  L  LD++   L    P   N+LS      
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS------ 199

Query: 480 SYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV 539
                     SL+                 + + +N+  +L          +        
Sbjct: 200 ----------SLQV----------------LNMSHNNFFSL------DTFPYKC------ 221

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNI--GVMRSIESLDLSANQLS 580
             L  LQ L+ S N +              S+  L+L+ N  +
Sbjct: 222 --LNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 47/224 (20%), Positives = 82/224 (36%), Gaps = 19/224 (8%)

Query: 247 LDISSTRISAKIPRGFWNSIYQYFYLNISGNQIY-GGIPKFDNPSMPLITTPSDLLGPIF 305
           L++ S ++   +P G ++ + Q   L++S N +   G     +     +           
Sbjct: 33  LELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY--------L 83

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNF 364
           DLS N +       +         +E L    +N            LR L  L++ H + 
Sbjct: 84  DLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 365 TGSLPMSIGTLSSLLSLNL-RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGER 423
             +       LSSL  L +  N+     +P  F    +L  LDL + +L   +       
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNS 197

Query: 424 FSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
            S L++LN+  N F          L  LQ+LD + N +  T  +
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 36/188 (19%), Positives = 58/188 (30%), Gaps = 40/188 (21%)

Query: 1   LSGNQFQGQIPSR--LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNV 58
              +  + Q+       +L +L YLD+S         G  + ++ LE L +  N  Q N 
Sbjct: 108 FQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166

Query: 59  SSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR-FTKLSQDISEILGIFSA 117
                  L ++  L LS+                +L   S   F  LS            
Sbjct: 167 LPDIFTELRNLTFLDLSQC---------------QLEQLSPTAFNSLSS----------- 200

Query: 118 CVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSN---TILDGSIPFSLGQISNLEYL 174
                L+ L +  +  F   T   +    L  LD S                  S+L +L
Sbjct: 201 -----LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF--PSSLAFL 253

Query: 175 DLSNNKLN 182
           +L+ N   
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 50/212 (23%)

Query: 401 SLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS 460
           S   +      L  S+P+ I    S    L L SNK           L  L  L ++SN 
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 461 LSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL 520
           LS                                             KG   + +     
Sbjct: 64  LS--------------------------------------------FKGCCSQSDFGTTS 79

Query: 521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQL 579
           ++ +D+S N     +      L+ L+ L+  H+ L      ++   +R++  LD+S    
Sbjct: 80  LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138

Query: 580 SGQIPQSMSNLSFLNHLNLSNNNLVGKIPSST 611
                   + LS L  L ++ N+         
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 80.5 bits (199), Expect = 4e-16
 Identities = 65/438 (14%), Positives = 124/438 (28%), Gaps = 90/438 (20%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
            +  + Q         L +L  LD  ++ +    +  + K+  L  L   SN +    ++
Sbjct: 25  AAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI----TT 78

Query: 61  LGLENLTSIKRLYLSENDELGGKIPT-SFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
           L L   T++  L    N     K+       L KLT  +    KL++             
Sbjct: 79  LDLSQNTNLTYLACDSN-----KLTNLDVTPLTKLTYLNCDTNKLTKLDVSQN------- 126

Query: 120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
              L  L    + +       +    +L  LD         +  +    + L  LD S N
Sbjct: 127 -PLLTYLNCARNTL---TEIDVSHNTQLTELDCHLNKKITKLDVT--PQTQLTTLDCSFN 180

Query: 180 KLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
           K+    +E+       L     + N               +T L+L              
Sbjct: 181 KI----TELDVSQNKLLNRLNCDTN--------------NITKLDLNQN----------- 211

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD 299
              +L  LD SS +++ +I       + Q  Y + S N +   +       +        
Sbjct: 212 --IQLTFLDCSSNKLT-EID---VTPLTQLTYFDCSVNPL-TELDVSTLSKL-------- 256

Query: 300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNL 359
                       L   I        + ++N + +                +  +L  L+ 
Sbjct: 257 ---TTLHCIQTDLL-EI--------DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304

Query: 360 GHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSW 419
                T  L   +     L+ L L N  L+ +      + + L+ L      +     S 
Sbjct: 305 QAAGIT-ELD--LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQ-DFSSV 357

Query: 420 IGERFSILKILNLRSNKF 437
              +   L        + 
Sbjct: 358 --GKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 68/474 (14%), Positives = 123/474 (25%), Gaps = 108/474 (22%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEI-HFVNLTKLAFFRAN 202
           F    +        D     S  Q++ L  LD  N+ +   ++ I     LTKL     N
Sbjct: 20  FASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSNN 75

Query: 203 GNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGF 262
             +L    N N      LT L   S  L     L +    +L  L+  + +++       
Sbjct: 76  ITTLDLSQNTN------LTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLDVSQN 126

Query: 263 WNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ 322
                   YLN + N +                          D+S+N            
Sbjct: 127 PLLT----YLNCARNTLT-----------------------EIDVSHN------------ 147

Query: 323 GENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLN 382
                  +  L    N     +        +L  L+   N  T    + +     L  LN
Sbjct: 148 -----TQLTELDCHLNKKITKLDVTPQT--QLTTLDCSFNKITE---LDVSQNKLLNRLN 197

Query: 383 LRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP 442
              N ++ +          L  LD   N+L   I        + L   +   N       
Sbjct: 198 CDTNNITKL---DLNQNIQLTFLDCSSNKLT-EIDV---TPLTQLTYFDCSVNPLT---E 247

Query: 443 IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED 502
           + +  L+ L  L      L          L             +  +             
Sbjct: 248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ--------- 298

Query: 503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562
               +  +  +   I  L                 +++    L  L L++  LT  +   
Sbjct: 299 ----LYLLDCQAAGITEL-----------------DLSQNPKLVYLYLNNTELT-ELD-- 334

Query: 563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSF 616
           +     ++SL      +      S+  +  LN+   +    +     +    S 
Sbjct: 335 VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 62/401 (15%), Positives = 114/401 (28%), Gaps = 108/401 (26%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLY 73
           L   T+L YL   SN+L +  +  L+K   L +L+  +N+L    + L +     +  L 
Sbjct: 81  LSQNTNLTYLACDSNKLTNLDVTPLTK---LTYLNCDTNKL----TKLDVSQNPLLTYLN 133

Query: 74  LSENDELGGKIPT-SFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQ 132
            + N      +         +LT       K                          +  
Sbjct: 134 CARN-----TLTEIDVSHNTQLTELDCHLNKKI------------------------TKL 164

Query: 133 IFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVN 192
                T        L +LD S   +       + Q   L  L+   N +    +++    
Sbjct: 165 DVTPQTQ-------LTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNI----TKLDLNQ 210

Query: 193 LTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISST 252
             +L F   + N              +LT +++                 +L   D S  
Sbjct: 211 NIQLTFLDCSSN--------------KLTEIDVTPL-------------TQLTYFDCSVN 243

Query: 253 RISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNAL 312
            ++                L+     +   I    N  +              D+++N  
Sbjct: 244 PLTELDVSTLSK----LTTLHCIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELDVTHNT- 297

Query: 313 SGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSI 372
              ++ L CQ       I  L LS+N              +L  L L +   T  L   +
Sbjct: 298 --QLYLLDCQA----AGITELDLSQNP-------------KLVYLYLNNTELT-ELD--V 335

Query: 373 GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
              + L SL+  N  +     +S     +L      E + +
Sbjct: 336 SHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 60.5 bits (147), Expect = 1e-09
 Identities = 52/289 (17%), Positives = 110/289 (38%), Gaps = 30/289 (10%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
             +          +  +S   L++L SL+  N+ ++ +  T  +  + L  L    N + 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
            ++      + + L  L   SNK      + +  L  L  L+  +N L+         L+
Sbjct: 78  -TLDL---SQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLDVSQNPLLT 130

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
            +    +    + +     S        D  L  K   ++      L  ++D S N  + 
Sbjct: 131 YLNCARNTLTEIDV-----SHNTQLTELDCHLNKKITKLDVTPQTQL-TTLDCSFNKITE 184

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFL 593
              ++V+  + L  LN   N +T ++   +     +  LD S+N+L+ +I   ++ L+ L
Sbjct: 185 ---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQL 235

Query: 594 NHLNLSNNNLVGKIPSS--TQLQSFGASSFAGNDLCGDPLSNCTEKNVL 640
            + + S N L  ++  S  ++L +         DL    L++ T+    
Sbjct: 236 TYFDCSVNPL-TELDVSTLSKLTTLHCIQ---TDLLEIDLTHNTQLIYF 280

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 51/318 (16%), Positives = 102/318 (32%), Gaps = 51/318 (16%)

Query: 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI 387
             +  L    ++ + D+         L  L    NN T +L   +   ++L  L   +N 
Sbjct: 42  ATLTSLDCHNSSIT-DMTGIE-KLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNK 96

Query: 388 LSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG 447
           L+ +        + L  L+   N+L     S    +  +L  LN   N       I +  
Sbjct: 97  LTNL---DVTPLTKLTYLNCDTNKLTKLDVS----QNPLLTYLNCARNTLT---EIDVSH 146

Query: 448 LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV- 506
              L  LD   N     +   +   + +   D             S  +    + +    
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDC------------SFNKITELDVSQNKL 192

Query: 507 MKGVLVEYNSILNL-------VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRI 559
           +  +  + N+I  L       +  +D S N  +    ++VT L  L   + S N LT  +
Sbjct: 193 LNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT-EL 248

Query: 560 PDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS--TQLQSFG 617
             +   +  + +L      L  +I   +++ + L +        + ++  +  TQL    
Sbjct: 249 DVST--LSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLL- 302

Query: 618 ASSFAGNDLCGDPLSNCT 635
                   +    LS   
Sbjct: 303 --DCQAAGITELDLSQNP 318

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 80.2 bits (198), Expect = 5e-16
 Identities = 58/251 (23%), Positives = 91/251 (36%), Gaps = 48/251 (19%)

Query: 353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
             R LNL  N        S   L  L  L L  N +  I   +F   ++L  L+L +N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 413 VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNL 472
             +IP+      S LK L LR+N            +  L+ LD+               L
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL----------KRL 173

Query: 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS 532
           S +                        FE                L+ +R ++++     
Sbjct: 174 SYI--------------------SEGAFEG---------------LSNLRYLNLAMCNLR 198

Query: 533 GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
            EIP  +T L  L  L+LS N L+   P +   +  ++ L +  +Q+      +  NL  
Sbjct: 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 593 LNHLNLSNNNL 603
           L  +NL++NNL
Sbjct: 257 LVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 56/267 (20%), Positives = 93/267 (34%), Gaps = 46/267 (17%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  NQ Q    +   +L  L+ L LS N + +  +G  + + +L  L ++ NRL   + +
Sbjct: 71  LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPN 129

Query: 61  LGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
                L+ +K L+L  N      I      +F ++  L    +   K    ISE  G F 
Sbjct: 130 GAFVYLSKLKELWLRNN-----PIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFE 182

Query: 117 ACVANELESLRLGSSQI-----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL 171
                 L  L L    +        L         L+ LDLS   L    P S   + +L
Sbjct: 183 GLSN--LRYLNLAMCNLREIPNLTPLIK-------LDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 172 EYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL------IFKINPNWVPPFQLTVLEL 225
           + L +  +++   +    F NL  L       N+L      +F    +      L  + L
Sbjct: 234 QKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH------LERIHL 286

Query: 226 RS------CHLGPRFPLWLQSQRELND 246
                   C +      W++     N 
Sbjct: 287 HHNPWNCNCDILW-LSWWIKDMAPSNT 312

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.2 bits (180), Expect = 9e-14
 Identities = 54/255 (21%), Positives = 89/255 (34%), Gaps = 27/255 (10%)

Query: 212 PNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFY 271
           P+ +      +L L    +        +  R L  L +S   I   I  G +N +     
Sbjct: 59  PDGIST-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNT 116

Query: 272 LNISGNQIYGGIPK--FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN- 328
           L +  N++   IP   F    +  +            L NN +  SI         F+  
Sbjct: 117 LELFDNRL-TTIPNGAFVY--LSKLKE--------LWLRNNPIE-SI-----PSYAFNRI 159

Query: 329 -NIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN 386
            ++  L L +      I +     L  LR LNL   N    +P ++  L  L  L+L  N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 387 ILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLC 446
            LS I P SF+    L+ L + ++++   I     +    L  +NL  N           
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 447 GLAFLQILDVASNSL 461
            L  L+ + +  N  
Sbjct: 277 PLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 49/268 (18%), Positives = 82/268 (30%), Gaps = 42/268 (15%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
                 L+L    +      S   + +LE L LS N +  T+    F  L  L       
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 204 NSLIFKINPNWVPPF-QLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGF 262
           N  +  I         +L  L LR+  +             L  LD+   +  + I  G 
Sbjct: 122 NR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 263 WNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ 322
           +  +    YLN++   +   IP                                      
Sbjct: 181 FEGLSNLRYLNLAMCNLRE-IPNLTPLI-------------------------------- 207

Query: 323 GENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLN 382
                  ++ L LS N+ S   P  +   + L+ L +  +        +   L SL+ +N
Sbjct: 208 ------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261

Query: 383 LRNNILSGIIPTSFKNFSSLEVLDLGEN 410
           L +N L+ +    F     LE + L  N
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 46/228 (20%), Positives = 79/228 (34%), Gaps = 37/228 (16%)

Query: 393 PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQ 452
           P+     +    +      L   +P  I    +  ++LNL  N+           L  L+
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 453 ILDVASNSLSGTIPRCINNLSAMA--------ITDSYDQAVILYSSLR---------SEG 495
           IL ++ N +        N L+ +         +T   + A +  S L+            
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 496 QSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLL 555
            S  F     + +  L E   +  +      S+  F G        L  L+ LNL+   L
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYI------SEGAFEG--------LSNLRYLNLAMCNL 197

Query: 556 TGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
              IP+ +  +  ++ LDLS N LS   P S   L  L  L +  + +
Sbjct: 198 R-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNL 598
            +L+ L+ L LS N +   I       + ++ +L+L  N+L+     +   LS L  L L
Sbjct: 85  KHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143

Query: 599 SNNNLVGKIPSST 611
            NN +   IPS  
Sbjct: 144 RNNPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
             + LNL  N +     ++   +R +E L LS N +      + + L+ LN L L +N L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 604 VGKIPSST 611
              IP+  
Sbjct: 125 T-TIPNGA 131

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 75.9 bits (187), Expect = 7e-15
 Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 11/236 (4%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N+      S L    +L+ L L+SN +N+      S +  LE L +  N L  N+SS
Sbjct: 59  LSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSS 117

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
              + L+S+  L L  N        + F  L KL    +        I      F+    
Sbjct: 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFAGLTF 175

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
             LE L + +S +  +    L+  + ++ L L        +   +   S++E L+L +  
Sbjct: 176 --LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233

Query: 181 LNGT----VSEIHFVNLTKLAFFRANGNSL--IFKINPNWVPPFQLTVLELRSCHL 230
           L+      +S     +L K   FR    +   +F++         L  LE     L
Sbjct: 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 53/297 (17%), Positives = 88/297 (29%), Gaps = 72/297 (24%)

Query: 123 LESLRLGSSQI-------FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL-GQISNLEYL 174
           L++L L S+ I       F  L +       L  LDLS   L  ++  S    +S+L +L
Sbjct: 78  LQALVLTSNGINTIEEDSFSSLGS-------LEHLDLSYNYL-SNLSSSWFKPLSSLTFL 129

Query: 175 DLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF-QLTVLELRSCHLGPR 233
           +L  N          F +LTKL   R        KI          L  LE+ +  L   
Sbjct: 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189

Query: 234 FPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPL 293
            P  L+S + ++ L +   +    +   F +       L +    +              
Sbjct: 190 EPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDT------------ 236

Query: 294 ITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR 353
                           + LS                 E   L             +    
Sbjct: 237 -------------FHFSELS---------------TGETNSL-------------IKKFT 255

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410
            R + +   +    +   +  +S LL L    N L  +    F   +SL+ + L  N
Sbjct: 256 FRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 52/270 (19%), Positives = 104/270 (38%), Gaps = 20/270 (7%)

Query: 18  TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSEN 77
            ++K LDLS+N +       L +  +L+ L + SN +   +      +L S++ L LS N
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN 110

Query: 78  DELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHL 137
             L     + F  L  LT  ++      + + E   +FS     +L+ LR+G+   F  +
Sbjct: 111 -YLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGE-TSLFSHL--TKLQILRVGNMDTFTKI 165

Query: 138 TNQ-LRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKL 196
             +       L  L++  + L    P SL  I N+ +L L   +    + EI     + +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224

Query: 197 AFFRANGNSLIFKINPNWVPP---------FQLTVLELRSCHLGPRFPLWLQSQRELNDL 247
                    L    + + +           F    +++    L  +    L     L +L
Sbjct: 225 ECLELRDTDLD-TFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLEL 282

Query: 248 DISSTRISAKIPRGFWNSIYQYFYLNISGN 277
           + S  ++ + +P G ++ +     + +  N
Sbjct: 283 EFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 55/278 (19%), Positives = 103/278 (37%), Gaps = 38/278 (13%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLN 382
              +  ++ L LS N  +          + L+AL L  N    ++      +L SL  L+
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 383 LRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKF----- 437
           L  N LS +  + FK  SSL  L+L  N       + +    + L+IL + +        
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 438 HGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQS 497
             DF     GL FL+ L++ ++ L    P+ + ++  +         +IL+         
Sbjct: 167 RKDFA----GLTFLEELEIDASDLQSYEPKSLKSIQNV-------SHLILHMKQHILLLE 215

Query: 498 EIFEDASLVMKGVL-------VEYNSILNLV----------RSIDVSKNIFSGEIPVEVT 540
              +  S V    L         ++ +              R++ ++      ++   + 
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 541 NLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSAN 577
            + GL  L  S N L   +PD I   + S++ + L  N
Sbjct: 275 QISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 41/239 (17%)

Query: 1   LSGNQFQGQIPSRL-GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           L+ N     I      +L SL++LDLS N L++    W   ++ L FL++  N  +    
Sbjct: 83  LTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE 141

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
           +    +LT ++ L +   D         F  L  L    +  + L Q          +  
Sbjct: 142 TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL-QSYEP--KSLKSIQ 198

Query: 120 ANELESLRLGSSQI-------FGHLTN-------------------------QLRRFKRL 147
              +  L L   Q            ++                          L +    
Sbjct: 199 N--VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 148 NSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
            ++ +++  L   +   L QIS L  L+ S N+L  +V +  F  LT L     + N  
Sbjct: 257 RNVKITDESL-FQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 47/261 (18%), Positives = 85/261 (32%), Gaps = 59/261 (22%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           +++L+L +N  T      +    +L +L L +N ++ I   SF +  SLE LDL  N L 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQL-CGLAFLQILDVASNSLSGTIPRCINNL 472
            ++ S   +  S L  LNL  N +       L   L  LQIL V +      I       
Sbjct: 114 -NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ------ 166

Query: 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS 532
                                    + F                 L  +  +++  +   
Sbjct: 167 ------------------------RKDFAG---------------LTFLEELEIDASDLQ 187

Query: 533 GEIPVEV-TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNL 590
                +   ++Q +  L L        + +    V  S+E L+L    L       +S  
Sbjct: 188 -SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 591 SF--------LNHLNLSNNNL 603
                       ++ +++ +L
Sbjct: 246 ETNSLIKKFTFRNVKITDESL 266

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 48/300 (16%), Positives = 94/300 (31%), Gaps = 28/300 (9%)

Query: 148 NSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLI 207
                S+  L+ SIP  L     ++ LDLSNN++   +S         L       N  I
Sbjct: 34  GICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSN-GI 88

Query: 208 FKINPNW-VPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSI 266
             I  +       L  L+L   +L      W +    L  L++             ++ +
Sbjct: 89  NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148

Query: 267 YQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENF 326
            +   L +     +  I + D   +  +           ++  + L  S      +    
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEE--------LEIDASDLQ-SYEPKSLKS--- 196

Query: 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGT--------LSSL 378
             N+  L L        +         +  L L   +        + T          + 
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 379 LSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH 438
            ++ + +  L  +        S L  L+   N+L  S+P  I +R + L+ + L +N + 
Sbjct: 257 RNVKITDESLFQV-MKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 40/263 (15%), Positives = 91/263 (34%), Gaps = 31/263 (11%)

Query: 217 PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
              +  L+L +  +       LQ    L  L ++S  I+  I    ++S+    +L++S 
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSY 109

Query: 277 NQIYGGIPK--FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEF 332
           N +   +    F    +  +T          +L  N         + +   FS+   ++ 
Sbjct: 110 NYL-SNLSSSWFKP--LSSLTF--------LNLLGNPYKT-----LGETSLFSHLTKLQI 153

Query: 333 LKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGI 391
           L++   +    I       L  L  L +  ++     P S+ ++ ++  L L       +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 392 IPTSFKNFSSLEVLDLGENELVG----SIPSWIGERFS---ILKILNLRSNKFHGDFPIQ 444
           +       SS+E L+L + +L       + +            + + +            
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 445 LCGLAFLQILDVASNSLSGTIPR 467
           L  ++ L  L+ + N L  ++P 
Sbjct: 273 LNQISGLLELEFSRNQLK-SVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 37/271 (13%), Positives = 81/271 (29%), Gaps = 63/271 (23%)

Query: 358 NLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP 417
                +   S+P  +    ++ SL+L NN ++ I  +  +   +L+ L L  N +  +I 
Sbjct: 37  KGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92

Query: 418 SWIGERFSILKILNLRSNKF----HGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
                    L+ L+L  N         F      L+ L  L++  N    T+        
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFK----PLSSLTFLNLLGNPYK-TLG------- 140

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
                                 ++ +F   + +    +   ++   +       +  F+G
Sbjct: 141 ----------------------ETSLFSHLTKLQILRVGNMDTFTKI------QRKDFAG 172

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLSF 592
                   L  L+ L +  + L           ++++  L L   Q    +   +   S 
Sbjct: 173 --------LTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSS 223

Query: 593 LNHLNLSNNNLVGKIPSSTQLQSFGASSFAG 623
           +  L L + +L      +             
Sbjct: 224 VECLELRDTDL-----DTFHFSELSTGETNS 249

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 42/257 (16%)

Query: 9   QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTS 68
            +P  +    + + + L  N ++           +L  L ++SN L   + +     L  
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLAL 81

Query: 69  IKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRL 128
           +++L LS+N +L    P +F  L +L +  +    L Q++    G+F    A  L+ L L
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGP--GLFRGLAA--LQYLYL 136

Query: 129 GSSQI-------FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKL 181
             + +       F  L N       L  L L    +      +   + +L+ L L  N++
Sbjct: 137 QDNALQALPDDTFRDLGN-------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 182 NGTVSEIHFVNLTKLAFFRANGNSL------IFKINPNWVPPFQLTVLELR------SCH 229
              V    F +L +L       N+L                   L  L L        C 
Sbjct: 190 A-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA------LQYLRLNDNPWVCDCR 242

Query: 230 LGPRFPLWLQSQRELND 246
             P    WLQ  R  + 
Sbjct: 243 ARP-LWAWLQKFRGSSS 258

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 55/253 (21%), Positives = 90/253 (35%), Gaps = 50/253 (19%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
            + + L  N  +     S     +L  L L +N+L+ I   +F   + LE LDL +N  +
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCI-NNL 472
            S+          L  L+L         P    GLA LQ L +  N+L   +P     +L
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 152

Query: 473 SAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS 532
                            +L             L + G         N + S+   +  F 
Sbjct: 153 ----------------GNLT-----------HLFLHG---------NRISSV--PERAFR 174

Query: 533 GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLS 591
           G        L  L  L L  N +   +  +    +  + +L L AN LS    ++++ L 
Sbjct: 175 G--------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 592 FLNHLNLSNNNLV 604
            L +L L++N  V
Sbjct: 226 ALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 47/258 (18%), Positives = 74/258 (28%), Gaps = 50/258 (19%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
                  + + L  N  S      +     L  L L  N        +   L+ L  L+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 384 -RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP 442
             N  L  + P +F     L  L L    L   +   +    + L+ L L+ N       
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 443 IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED 502
                L  L  L +  N +S    R    L                 SL           
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGL----------------HSLD---------- 180

Query: 503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562
             L++           N V  +    + F          L  L +L L  N L+  +P  
Sbjct: 181 -RLLLHQ---------NRVAHVH--PHAFRD--------LGRLMTLYLFANNLS-ALPTE 219

Query: 563 I-GVMRSIESLDLSANQL 579
               +R+++ L L+ N  
Sbjct: 220 ALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 13/166 (7%)

Query: 306 DLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIP-DCWMNWLRLRALNLGHN 362
            L +N L+  I         F+    +E L LS N     +    +    RL  L+L   
Sbjct: 62  WLHSNVLA-RI-----DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 363 NFTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG 421
                L   +   L++L  L L++N L  +   +F++  +L  L L  N +  S+P    
Sbjct: 116 GLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAF 173

Query: 422 ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
                L  L L  N+     P     L  L  L + +N+LS  +P 
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 55/250 (22%)

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
            +        ++P+ I   ++   + L  N +S +   SF+   +L +L L  N L   I
Sbjct: 16  TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARI 71

Query: 417 PSWIGERFSILKILNLRSNKFHGDFPIQ-LCGLAFLQILDVASNSLSGTIPRCI-NNLSA 474
            +      ++L+ L+L  N            GL  L  L +    L   +   +   L  
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGL-- 128

Query: 475 MAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
                         ++L+            L +     + N++  L        + F   
Sbjct: 129 --------------AALQ-----------YLYL-----QDNALQAL------PDDTFRD- 151

Query: 535 IPVEVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLSFL 593
                  L  L  L L  N ++  +P+     + S++ L L  N+++   P +  +L  L
Sbjct: 152 -------LGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 594 NHLNLSNNNL 603
             L L  NNL
Sbjct: 204 MTLYLFANNL 213

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 44/218 (20%), Positives = 72/218 (33%), Gaps = 20/218 (9%)

Query: 247 LDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFD 306
           + +   RIS  +P   + +      L +  N +   I       + L+           D
Sbjct: 37  IFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQ--------LD 86

Query: 307 LSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWL-RLRALNLGHNN 363
           LS+NA   S+         F     +  L L +     ++       L  L+ L L  N 
Sbjct: 87  LSDNAQLRSV-----DPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGER 423
                  +   L +L  L L  N +S +   +F+   SL+ L L +N +   +       
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRD 199

Query: 424 FSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSL 461
              L  L L +N         L  L  LQ L +  N  
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSM-SNLSFLNHLN 597
           T L  L+ L+LS N     +       +  + +L L    L  ++   +   L+ L +L 
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLY 135

Query: 598 LSNNNLVGKIPSST 611
           L +N L   +P  T
Sbjct: 136 LQDNALQ-ALPDDT 148

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
             Q + L  N ++     +    R++  L L +N L+     + + L+ L  L+LS+N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 604 VGKIPSST---------------QLQSFGASSFAG 623
           +  +  +T                LQ  G   F G
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG 127

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.1 bits (181), Expect = 1e-13
 Identities = 85/607 (14%), Positives = 163/607 (26%), Gaps = 178/607 (29%)

Query: 92  CKLTSFSMR--FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHL----TNQLRRFK 145
           CK      +   +K  ++I  I+        + +         +F  L       +++F 
Sbjct: 35  CKDVQDMPKSILSK--EEIDHIIM-----SKDAVSGTLR----LFWTLLSKQEEMVQKF- 82

Query: 146 RLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS 205
                     +L  +  F +  I   E    S      T   I   +         N N 
Sbjct: 83  -------VEEVLRINYKFLMSPIKT-EQRQPSMM----TRMYIEQRDRLY------NDNQ 124

Query: 206 LIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELND-------------LDISST 252
           +  K N   V   Q   L+LR           L   R   +             + +   
Sbjct: 125 VFAKYN---VSRLQP-YLKLRQ---------ALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 253 RISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNAL 312
             S K+       I   F+LN+  N                  +P  +L  +  L    +
Sbjct: 172 L-SYKVQCKMDFKI---FWLNL-KNC----------------NSPETVLEMLQKLLYQ-I 209

Query: 313 SGSIFHLICQGENFSNNIEFLKLSKNNF--SGDIPDC-------WMNWLRLRALNLGHNN 363
             +         N    I  ++        S    +C               A NL    
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLS--- 265

Query: 364 FTGSLPMSIGTLSSLLSLNLRN-NILSGIIPTSFKNFSSLEVLD-LGENELVGSIPSWIG 421
                         +L L  R   +   +   +  + S       L  +E+   +  ++ 
Sbjct: 266 ------------CKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 422 ERFSILKILNLRSNKFHGDFPIQLCGLAFLQI--------LDVASNSLSGTIPRCINNLS 473
            R   L    L +N       + +     ++           V  + L+  I   +N L 
Sbjct: 313 CRPQDLPREVLTTNPRR----LSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLV---------EYNSILN-LVRS 523
                  Y +   ++  L       +F  ++ +   +L          +   ++N L + 
Sbjct: 368 ----PAEYRK---MFDRL------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 524 IDVSKNIFSG---------EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDL 574
             V K              E+ V++ N   L      H      I D+  + ++ +S DL
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYAL------HR----SIVDHYNIPKTFDSDDL 464

Query: 575 SANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQL-QSFGASSFAGNDLCGDPLSN 633
               L           S + H +L N     ++     +   F    F    +  D  + 
Sbjct: 465 IPPYLDQYF------YSHIGH-HLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDSTAW 514

Query: 634 CTEKNVL 640
               ++L
Sbjct: 515 NASGSIL 521

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 47/215 (21%), Positives = 78/215 (36%), Gaps = 26/215 (12%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N  +        +   L+ LDLS  E+ +   G    ++ L  L +  N +Q +++ 
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLAL 93

Query: 61  LGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
                L+S+++L   E       +        G L  L   ++    +          FS
Sbjct: 94  GAFSGLSSLQKLVAVET-----NLASLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFS 146

Query: 117 ACVANELESLRLGSSQI-------FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQIS 169
                 LE L L S++I          L   +       SLDLS   ++  I     +  
Sbjct: 147 NLT--NLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLN--LSLDLSLNPMN-FIQPGAFKEI 200

Query: 170 NLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGN 204
            L+ L L  N+L  +V +  F  LT L     + N
Sbjct: 201 RLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 47/252 (18%), Positives = 80/252 (31%), Gaps = 51/252 (20%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
            + L+L  N        S  +   L  L+L    +  I   ++++ S L  L L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI- 88

Query: 414 GSIPSWIGERFSILKILNLRSNKFHG--DFPIQLCGLAFLQILDVASNSLSGTIPRCINN 471
            S+        S L+ L           +FPI    L  L+ L+VA N +          
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLI---------- 136

Query: 472 LSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV-MKGVLVEYNSILNLVRSIDVSKNI 530
                             S +       F  ++L  ++ + +  N I ++          
Sbjct: 137 -----------------QSFKLPE---YF--SNLTNLEHLDLSSNKIQSI------YCTD 168

Query: 531 FSGEIPVEVTNLQGLQ-SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSN 589
                   +  +  L  SL+LS N +   I         ++ L L  NQL          
Sbjct: 169 LRV-----LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222

Query: 590 LSFLNHLNLSNN 601
           L+ L  + L  N
Sbjct: 223 LTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 46/222 (20%)

Query: 18  TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSEN 77
            S K LDLS N L            +L+ L +    +Q  +     ++L+ +  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 78  DELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI 133
                 I      +F  L  L                        V   L SL    +  
Sbjct: 87  -----PIQSLALGAFSGLSSLQKLVA-------------------VETNLASL---ENFP 119

Query: 134 FGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVN 192
            GHL         L  L+++ N I    +P     ++NLE+LDLS+NK+  ++       
Sbjct: 120 IGHLKT-------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171

Query: 193 LTKLAFFRA----NGNSLIFKINPNWVPPFQLTVLELRSCHL 230
           L ++         + N + F I P      +L  L L +  L
Sbjct: 172 LHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 39/171 (22%), Positives = 64/171 (37%), Gaps = 20/171 (11%)

Query: 306 DLSNNALS----GSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH 361
           DLS   +     G+   L        +++  L L+ N         +     L+ L    
Sbjct: 58  DLSRCEIQTIEDGAYQSL--------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 362 NNFTGSLPMSIGTLSSLLSLNLRNN-ILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWI 420
            N        IG L +L  LN+ +N I S  +P  F N ++LE LDL  N++  SI    
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168

Query: 421 GERFSILKI----LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
                 + +    L+L  N  +            L+ L + +N L  ++P 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 44/251 (17%), Positives = 80/251 (31%), Gaps = 53/251 (21%)

Query: 169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSC 228
            + + LDLS N L   +    F +  +L     +                ++  +E  + 
Sbjct: 28  FSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRC--------------EIQTIEDGA- 71

Query: 229 HLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK--F 286
                     QS   L+ L ++   I + +  G ++ +     L      +   +     
Sbjct: 72  ---------YQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNL-ASLENFPI 120

Query: 287 DNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNFSGDI 344
            +       T  +L     ++++N +           E FSN  N+E L LS N     I
Sbjct: 121 GHL-----KTLKEL-----NVAHNLIQSFKLP-----EYFSNLTNLEHLDLSSNKIQ-SI 164

Query: 345 PDCWMNWLR-----LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNF 399
               +  L        +L+L  N     +         L  L L  N L  +    F   
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRL 223

Query: 400 SSLEVLDLGEN 410
           +SL+ + L  N
Sbjct: 224 TSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 4/72 (5%)

Query: 535 IPVEV-TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQL-SGQIPQSMSNLS 591
           + +   + L  LQ L      L   + +   G +++++ L+++ N + S ++P+  SNL+
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 592 FLNHLNLSNNNL 603
            L HL+LS+N +
Sbjct: 150 NLEHLDLSSNKI 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 68.6 bits (167), Expect = 4e-12
 Identities = 56/306 (18%), Positives = 115/306 (37%), Gaps = 35/306 (11%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L        +      L S+  +  +++++ S  +  +  + ++  L +  N+L  ++  
Sbjct: 28  LKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT-DIK- 81

Query: 61  LGLENLTSIKRLYLSENDELGGKIPT--SFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
             L NL ++  L+L EN     KI    S   L KL S S+    +S DI+ ++ +    
Sbjct: 82  -PLTNLKNLGWLFLDEN-----KIKDLSSLKDLKKLKSLSLEHNGIS-DINGLVHL---- 130

Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178
              +LESL LG+++I   +T  L R  +L++L L +  +   I   L  ++ L+ L LS 
Sbjct: 131 --PQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 184

Query: 179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL 238
           N ++  +  +    L  L          + K   +         ++     L    P  +
Sbjct: 185 NHIS-DLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEII 239

Query: 239 QSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPS 298
               +    ++        +P       + ++     G        +   P   + T   
Sbjct: 240 SDDGDYEKPNVKW-----HLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

Query: 299 DLLGPI 304
           D+ G +
Sbjct: 295 DVDGTV 300

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 3e-11
 Identities = 46/239 (19%), Positives = 93/239 (38%), Gaps = 32/239 (13%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL-GLENLTSIKRL 72
                     +L    +   V    +++N ++ +   ++    ++ S+ G++ L ++ +L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNS----DIKSVQGIQYLPNVTKL 70

Query: 73  YLSENDELGGKIP--TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGS 130
           +L+ N     K+        L  L    +   K+  D+S +  +       +L+SL L  
Sbjct: 71  FLNGN-----KLTDIKPLTNLKNLGWLFLDENKIK-DLSSLKDL------KKLKSLSLEH 118

Query: 131 SQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIH 189
           + I   +   L    +L SL L  N I D +    L +++ L+ L L +N+++  +  + 
Sbjct: 119 NGI-SDING-LVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS-DIVPLA 172

Query: 190 FVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLD 248
              LTKL     + N  I  +         L VLEL S     +      +    N + 
Sbjct: 173 --GLTKLQNLYLSKNH-ISDLRALAGLK-NLDVLELFSQECLNKPINHQSNLVVPNTVK 227

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 4e-09
 Identities = 55/301 (18%), Positives = 108/301 (35%), Gaps = 77/301 (25%)

Query: 307 LSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTG 366
             +  +   IF      + F+       L K + +  +    +N   +  +   +++   
Sbjct: 6   TVSTPIK-QIFPD----DAFAE-TIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIK- 56

Query: 367 SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSI 426
           S+   I  L ++  L L  N L+ I P    N  +L  L L EN++   + S   +    
Sbjct: 57  SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSL--KDLKK 110

Query: 427 LKILNLRSNKFHGDFPIQ----LCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD 482
           LK L+L  N       I     L  L  L+ L + +N ++      I  LS +       
Sbjct: 111 LKSLSLEHNG------ISDINGLVHLPQLESLYLGNNKIT-----DITVLSRL------- 152

Query: 483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNL 542
                 + L +                + +E N I ++V                 +  L
Sbjct: 153 ------TKLDT----------------LSLEDNQISDIV----------------PLAGL 174

Query: 543 QGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNN 602
             LQ+L LS N ++      +  +++++ L+L + +   +     SNL   N +  ++ +
Sbjct: 175 TKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 603 L 603
           L
Sbjct: 233 L 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.3 bits (122), Expect = 8e-07
 Identities = 43/256 (16%), Positives = 82/256 (32%), Gaps = 63/256 (24%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
               NL   + T ++      L+S+  +   N+ +  +     +   ++  L L  N+L 
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT 78

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
             I          L  L L  NK        L  L  L+ L +  N +S      IN L 
Sbjct: 79  -DIKPL--TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-----DINGLV 128

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
                                                       L  + S+ +  N  + 
Sbjct: 129 H-------------------------------------------LPQLESLYLGNNKITD 145

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFL 593
              +    L  L +L+L  N ++      +  +  +++L LS N +S    ++++ L  L
Sbjct: 146 ITVLS--RLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNL 199

Query: 594 NHLNLSNNNLVGKIPS 609
           + L L +   + K  +
Sbjct: 200 DVLELFSQECLNKPIN 215

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 4e-06
 Identities = 38/284 (13%), Positives = 86/284 (30%), Gaps = 60/284 (21%)

Query: 163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTV 222
           F     +     +L    +   V++    ++ ++       NS I  +            
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIA----NNSDIKSVQG---------- 60

Query: 223 LELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGG 282
                          +Q    +  L ++  +++   P     ++    +L +  N+I   
Sbjct: 61  ---------------IQYLPNVTKLFLNGNKLTDIKPLTNLKNLG---WLFLDENKI-KD 101

Query: 283 IPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNF 340
           +    +  +  + +          L +N +S  I           +   +E L L  N  
Sbjct: 102 LSSLKD--LKKLKS--------LSLEHNGIS-DI-------NGLVHLPQLESLYLGNNKI 143

Query: 341 SGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFS 400
           + DI        +L  L+L  N  +  +   +  L+ L +L L  N +S +         
Sbjct: 144 T-DI-TVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISDLRA--LAGLK 197

Query: 401 SLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQ 444
           +L+VL+L   E +    +       +   +            I 
Sbjct: 198 NLDVLELFSQECLNKPINHQ-SNLVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 50/220 (22%)

Query: 62  GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN 121
             +      +  L +          +  +L  +       + +   +  I  +       
Sbjct: 16  PDDAFAETIKDNLKKKS---VTDAVTQNELNSIDQIIANNSDIK-SVQGIQYL------P 65

Query: 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNNK 180
            +  L L  +++   +   L   K L  L L  N I D S   SL  +  L+ L L +N 
Sbjct: 66  NVTKLFLNGNKL-TDIKP-LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNG 120

Query: 181 LNGTVSEI-HFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ 239
           +    S+I   V+L +L       N  I  I                           L 
Sbjct: 121 I----SDINGLVHLPQLESLYLGNNK-ITDITV-------------------------LS 150

Query: 240 SQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI 279
              +L+ L +   +IS  I       + +   L +S N I
Sbjct: 151 RLTKLDTLSLEDNQIS-DIV--PLAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 12/214 (5%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N+      + L  LT L  L L  N+++   +  L+ +  L+ L +  N    ++S 
Sbjct: 138 LGNNKIT--DITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYLSKN----HISD 189

Query: 61  L-GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLS--QDISEILGIFSA 117
           L  L  L ++  L L    E   K       L    +       L   + IS+       
Sbjct: 190 LRALAGLKNLDVLELFSQ-ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248

Query: 118 CVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS 177
            V   L       S IF       +   R +           ++ + +        ++  
Sbjct: 249 NVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAG 308

Query: 178 NNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKIN 211
                                 +  G+   F  +
Sbjct: 309 TRITAPKPPTKQGYVFKGWYTEKNGGHEWNFNTD 342

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 5e-10
 Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 22/193 (11%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLY 73
           +  L +L  L+L  N++  T L  L  +  +  L +  N L+ NVS   +  L SIK L 
Sbjct: 59  VQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLD 113

Query: 74  LSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI 133
           L+          T    L  L    +   +++ +IS + G+        L+ L +G++Q+
Sbjct: 114 LTST---QITDVTPLAGLSNLQVLYLDLNQIT-NISPLAGL------TNLQYLSIGNAQV 163

Query: 134 FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNL 193
              LT  L    +L +L   +  +   I   L  + NL  + L NN+++         N 
Sbjct: 164 -SDLTP-LANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS---DVSPLANT 216

Query: 194 TKLAFFRANGNSL 206
           + L        ++
Sbjct: 217 SNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 52/268 (19%), Positives = 105/268 (39%), Gaps = 30/268 (11%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLY 73
              L +   +    + +  TV    + ++ +  LS +   +    +  G++ L ++  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLE 69

Query: 74  LSENDELGGKI--PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSS 131
           L +N     +I        L K+T   +    L  ++S I G+        +++L L S+
Sbjct: 70  LKDN-----QITDLAPLKNLTKITELELSGNPLK-NVSAIAGL------QSIKTLDLTST 117

Query: 132 QIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFV 191
           QI       L     L  L L    +  +I   L  ++NL+YL + N +++  ++ +   
Sbjct: 118 QITD--VTPLAGLSNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVS-DLTPLA-- 170

Query: 192 NLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISS 251
           NL+KL   +A+ N  I  I         L  + L++  +    P  L +   L  + +++
Sbjct: 171 NLSKLTTLKADDNK-ISDI-SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Query: 252 TRISAKIPRGFWNSIYQYFYLNISGNQI 279
             I+ +      N +        SG  I
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 41/203 (20%), Positives = 81/203 (39%), Gaps = 34/203 (16%)

Query: 12  SRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKR 71
           + L NLT +  L+LS N L +  +  ++ +  ++ L + S ++        L  L++++ 
Sbjct: 79  APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQV 133

Query: 72  LYLSENDELGGKIP--TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLG 129
           LYL  N     +I   +    L  L   S+   ++S D++ +  +      ++L +L+  
Sbjct: 134 LYLDLN-----QITNISPLAGLTNLQYLSIGNAQVS-DLTPLANL------SKLTTLKAD 181

Query: 130 SSQI-----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGT 184
            ++I        L N       L  + L N  +    P  L   SNL  + L+N  +   
Sbjct: 182 DNKISDISPLASLPN-------LIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT-N 231

Query: 185 VSEIHFVNLTKLAFFRANGNSLI 207
               +  NL      +    + I
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 42/250 (16%), Positives = 90/250 (36%), Gaps = 41/250 (16%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
              +  G +N T ++      L  + +L+     ++ I     +  ++L  L+L +N++ 
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
              P    +  + +  L L  N         + GL  ++ LD+ S  ++   P  +  LS
Sbjct: 77  DLAPL---KNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
            + +       +   S L                          L  ++ + +     S 
Sbjct: 130 NLQVLYLDLNQITNISPLAG------------------------LTNLQYLSIGNAQVSD 165

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFL 593
             P+   NL  L +L    N ++      +  + ++  + L  NQ+S   P  ++N S L
Sbjct: 166 LTPLA--NLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 594 NHLNLSNNNL 603
             + L+N  +
Sbjct: 220 FIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 45/284 (15%), Positives = 109/284 (38%), Gaps = 57/284 (20%)

Query: 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNIL 388
           N   +   K+N +  +    ++   +  L+      T ++   +  L++L+ L L++N +
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 389 SGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGL 448
           + + P   KN + +  L+L  N L  ++ +        +K L+L S +     P  L GL
Sbjct: 76  TDLAP--LKNLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITDVTP--LAGL 128

Query: 449 AFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMK 508
           + LQ+L +  N ++      I+ L+ +             ++L+                
Sbjct: 129 SNLQVLYLDLNQITN-----ISPLAGL-------------TNLQY--------------- 155

Query: 509 GVLVEYNSI--------LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIP 560
            + +    +        L+ + ++    N  S   P+   +L  L  ++L +N ++    
Sbjct: 156 -LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISD--V 210

Query: 561 DNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV 604
             +    ++  + L+   ++ Q     +NL   N +   +   +
Sbjct: 211 SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 46/275 (16%), Positives = 102/275 (37%), Gaps = 41/275 (14%)

Query: 163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTV 222
           F    ++N   +    + +  TV++     +T L+ F     + +  I         L  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAF----GTGVTTIEGVQYLN-NLIG 67

Query: 223 LELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGG 282
           LEL+   +    P  L++  ++ +L++S   +          SI     L+++  QI   
Sbjct: 68  LELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIK---TLDLTSTQI-TD 121

Query: 283 IPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN--NIEFLKLSKNNF 340
           +       +  +            L  N ++ +I          +   N+++L +     
Sbjct: 122 VTPLAG--LSNLQV--------LYLDLNQIT-NI-------SPLAGLTNLQYLSIGNAQV 163

Query: 341 SGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFS 400
           S D+     N  +L  L    N  +  +   + +L +L+ ++L+NN +S + P    N S
Sbjct: 164 S-DLTPLA-NLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTS 217

Query: 401 SLEVLDLGENELVGSIPSWIGERFSILKILNLRSN 435
           +L ++ L       +I +      + L + N+   
Sbjct: 218 NLFIVTLTNQ----TITNQPVFYNNNLVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 14/135 (10%)

Query: 62  GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN 121
               L +  ++   +++        +   L  +T+ S   T ++  I  +  +      N
Sbjct: 14  PDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIEGVQYL------N 63

Query: 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKL 181
            L  L L  +QI   L   L+   ++  L+LS   L      ++  + +++ LDL++ ++
Sbjct: 64  NLIGLELKDNQI-TDLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQI 119

Query: 182 NGTVSEIHFVNLTKL 196
                     NL  L
Sbjct: 120 TDVTPLAGLSNLQVL 134

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 23/170 (13%), Positives = 63/170 (37%), Gaps = 16/170 (9%)

Query: 15  GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYL 74
             + SL Y+ L++  +    L  +   ++++ L++ +     N +   +  L++++RL +
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRI 95

Query: 75  SENDELGGKIPTSFGKLCKLTSFSMRFTKLS-QDISEILGIFSACVANELESLRLGSSQI 133
               ++      +   L  LT   +  +      +++I  +       ++ S+ L  +  
Sbjct: 96  MGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL------PKVNSIDLSYNGA 148

Query: 134 FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNG 183
              +   L+    L SL++    +             L  L   +  + G
Sbjct: 149 ITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 23/133 (17%), Positives = 49/133 (36%), Gaps = 12/133 (9%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           ++        P  +  L++L+ L +   ++ S  +  LS +  L  L +  +    ++ +
Sbjct: 73  INNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             +  L  +  + LS N  +          L +L S +++F  +  D   I         
Sbjct: 131 -KINTLPKVNSIDLSYNGAI--TDIMPLKTLPELKSLNIQFDGVH-DYRGIEDF------ 180

Query: 121 NELESLRLGSSQI 133
            +L  L   S  I
Sbjct: 181 PKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           L  L +   + T     ++  L+SL  L++ ++     I T       +  +DL  N  +
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG 463
             I     +    LK LN++ +  H    I+      L  L   S ++ G
Sbjct: 150 TDIMPL--KTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 16/71 (22%), Positives = 32/71 (45%)

Query: 539 VTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNL 598
           ++ L  L+ L +    +T     N+  + S+  LD+S +     I   ++ L  +N ++L
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 599 SNNNLVGKIPS 609
           S N  +  I  
Sbjct: 144 SYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 17/167 (10%)

Query: 43  DLEFLSVYSNRLQGN-VSSLGLENLTSIKRLYLSENDELGGKIP--TSFGKLCKLTSFSM 99
           D  F +  +  L  +  +++    + S+  + L+        +   T       +   ++
Sbjct: 19  DSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANI-----NVTDLTGIEYAHNIKDLTI 73

Query: 100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG 159
                + + + I G+      + LE LR+    +       L     L  LD+S++  D 
Sbjct: 74  NNIHAT-NYNPISGL------SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 160 SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
           SI   +  +  +  +DLS N     +  +    L +L       + +
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLK--TLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG 581
             + +     + +    ++ L  L  L++SH+     I   I  +  + S+DLS N    
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT 150

Query: 582 QIPQSMSNLSFLNHLNLSNNNL 603
            I   +  L  L  LN+  + +
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 57/229 (24%)

Query: 375 LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRS 434
             + L+  L  +  + I   +    +SL  + L     V  +     E    +K L + +
Sbjct: 22  FKAYLNGLLGQSSTANI---TEAQMNSLTYITLANIN-VTDLTGI--EYAHNIKDLTINN 75

Query: 435 NKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSE 494
                  PI   GL+ L+ L +    ++      ++ L+                     
Sbjct: 76  IHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLT--------------------- 112

Query: 495 GQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNL 554
                                   +L   +D+S +     I  ++  L  + S++LS+N 
Sbjct: 113 ------------------------SL-TLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 555 LTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
               I   +  +  ++SL++  + +       + +   LN L   +  +
Sbjct: 148 AITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
           L  + L + N T  L   I    ++  L + N   +   P      S+LE L +   ++ 
Sbjct: 46  LTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI 465
                 +    + L +L++  +        ++  L  +  +D++ N     I
Sbjct: 102 SDKIPNLSG-LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 54/228 (23%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
            +A   G    + +  ++   ++SL  + L N  ++ +  T  +   +++ L +      
Sbjct: 22  FKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHAT 79

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
              P       S L+ L +       D    L GL  L +LD++ ++   +I   IN L 
Sbjct: 80  NYNPI---SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
                                                         +  SID+S N    
Sbjct: 137 ---------------------------------------------KV-NSIDLSYNGAIT 150

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG 581
           +I   +  L  L+SLN+  + +       I     +  L   +  + G
Sbjct: 151 DIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 11/70 (15%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 541 NLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600
               ++ L +++   T    + I  + ++E L +    ++     ++S L+ L  L++S+
Sbjct: 64  YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 601 NNLVGKIPSS 610
           +     I + 
Sbjct: 122 SAHDDSILTK 131

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 29/251 (11%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN-ILSGIIPTSFKNFSSLEVLDLGENEL 412
              L             +      L  + +  N +L  I    F N   L  + + +   
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 413 VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP-RCINN 471
           +  I     +    L+ L + +        +         +LD+  N    TI       
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151

Query: 472 LSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIF 531
           LS           + L  +   E  +  F    L  +  L + N++  L        ++F
Sbjct: 152 LSFE------SVILWLNKNGIQEIHNSAFNGTQL-DELNLSDNNNLEEL------PNDVF 198

Query: 532 SGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLD-LSANQLSGQIPQSMSNL 590
            G          G   L++S   +   +P     + +++ L   S   L  ++P ++  L
Sbjct: 199 HG--------ASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLK-KLP-TLEKL 245

Query: 591 SFLNHLNLSNN 601
             L   +L+  
Sbjct: 246 VALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 48/273 (17%)

Query: 1   LSGNQFQGQIPSR-LGNLTSLKYLDLSSNELNSTV-LGWLSKVNDLEFLSV-YSNRLQGN 57
               + +  I          L+ +++S N++   +     S +  L  + +  +N L   
Sbjct: 37  FVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-Y 94

Query: 58  VSSLGLENLTSIKRLYLSENDELGGKI----PTSFGKLCKLTSFSMRFTKLSQDISEILG 113
           ++    +NL +++ L +S        I            +     ++       I     
Sbjct: 95  INPEAFQNLPNLQYLLISNT-----GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--N 147

Query: 114 IFSACVANELESLRLGSSQI-------FGHLTNQLRRFKRLNSLD-LSNTILDGSIPFSL 165
            F    + E   L L  + I       F             N+L+ L N +  G      
Sbjct: 148 SFVGL-SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG------ 200

Query: 166 GQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPF----QLT 221
              S    LD+S  +++ ++      NL KL          +        P       L 
Sbjct: 201 --ASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKL--------PTLEKLVALM 249

Query: 222 VLELR-SCHLGPRFPLWLQSQRELNDLDISSTR 253
              L    H    F  W +   EL+ +   S  
Sbjct: 250 EASLTYPSHCC-AFANWRRQISELHPICNKSIL 281

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 47/263 (17%), Positives = 90/263 (34%), Gaps = 26/263 (9%)

Query: 355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414
           R      +  T  +P  +    + + L      L  I   +F  F  LE +++ +N+++ 
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 415 SIPSWIGERFSILKILNL-RSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLS 473
            I + +      L  + + ++N      P     L  LQ L +++  +         +L 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK--------HLP 120

Query: 474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG 533
            +    S  Q V+L   ++        E  S V          +      + ++KN    
Sbjct: 121 DVHKIHS-LQKVLLD--IQDNINIHTIERNSFV---------GLSFESVILWLNKNGIQ- 167

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLSF 592
           EI     N   L  LNLS N     +P+++         LD+S  ++       + NL  
Sbjct: 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 593 LNHLNLSNNNLVGKIPSSTQLQS 615
           L   +  N   +  +     L  
Sbjct: 228 LRARSTYNLKKLPTLEKLVALME 250

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 5e-07
 Identities = 53/293 (18%), Positives = 86/293 (29%), Gaps = 66/293 (22%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
            +    L    T L      +     +LE +++S N +   +    F NL KL   R   
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
            + +  INP                          Q+   L  L IS+T I   +P    
Sbjct: 89  ANNLLYINPEA-----------------------FQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 264 NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQG 323
               Q   L+I  N                          I  +  N+  G         
Sbjct: 125 IHSLQKVLLDIQDN------------------------INIHTIERNSFVG--------- 151

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLN 382
              S     L L+KN    +I +   N  +L  LNL  NN    LP  +    S  + L+
Sbjct: 152 --LSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 383 LRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSN 435
           +    +  +     +N   L        + + ++     E+   L   +L   
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL-----EKLVALMEASLTYP 256

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 52/213 (24%), Positives = 80/213 (37%), Gaps = 50/213 (23%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N+           LT L+ L L+ N+L +   G   ++ +LE L V  N+LQ  +  
Sbjct: 44  LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPI 102

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR-FTKLSQDISEILGIFSACV 119
              + L ++  L L  N               +L S   R F  L++             
Sbjct: 103 GVFDQLVNLAELRLDRN---------------QLKSLPPRVFDSLTK------------- 134

Query: 120 ANELESLRLGSSQI-------FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL-GQISNL 171
              L  L LG +++       F  LT+       L  L L N  L   +P     +++ L
Sbjct: 135 ---LTYLSLGYNELQSLPKGVFDKLTS-------LKELRLYNNQL-KRVPEGAFDKLTEL 183

Query: 172 EYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGN 204
           + L L NN+L   V E  F +L KL   +   N
Sbjct: 184 KTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
            + L+L  N  +     +   L+ L  L L +N L  +    FK   +LE L + +N+L 
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ 98

Query: 414 GSIPSWIGERFSILKILNLRSNKF----HGDFPIQLCGLAFLQILDVASNSLSGTIP 466
            ++P  + ++   L  L L  N+        F      L  L  L +  N L  ++P
Sbjct: 99  -ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD----SLTKLTYLSLGYNELQ-SLP 149

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 53/225 (23%)

Query: 380 SLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHG 439
            L+L++N LS +   +F   + L +L L +N+L  ++P+ I                F  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI----------------FKE 83

Query: 440 DFPIQLCGLAFLQILDVASNSLSGTIPRCI-NNLSAMAITDSYDQAVILYSSLRSEGQSE 498
                   L  L+ L V  N L   +P  + + L  +         + L  +        
Sbjct: 84  --------LKNLETLWVTDNKLQ-ALPIGVFDQLVNL-------AELRLDRNQLKSLPPR 127

Query: 499 IFEDASLVMKGVL-VEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG 557
           +F   SL     L + YN + +L       K +F          L  L+ L L +N L  
Sbjct: 128 VF--DSLTKLTYLSLGYNELQSL------PKGVF--------DKLTSLKELRLYNNQLK- 170

Query: 558 RIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601
           R+P+     +  +++L L  NQL      +  +L  L  L L  N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.6 bits (141), Expect = 4e-09
 Identities = 42/279 (15%), Positives = 86/279 (30%), Gaps = 26/279 (9%)

Query: 347 CWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406
             +    L A +L       +  +      S     L  +        S      L   +
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS-ATDEQLFRCE 355

Query: 407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
           L   +    + S + E    L+ L   +        + +  L  L               
Sbjct: 356 LSVEKST-VLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYE-----------K 402

Query: 467 RCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI--------L 518
             +   S +   D    A +     +   ++ + +     ++ + + +  +        L
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQL 462

Query: 519 NLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQ 578
            LV  +D+S N     +P  +  L+ L+ L  S N L   +   +  +  ++ L L  N+
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 519

Query: 579 LSG-QIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSF 616
           L      Q + +   L  LNL  N+L  +     +L   
Sbjct: 520 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N+ +  +P  L  L  L+ L  S N L +  +  ++ +  L+ L + +NRLQ + + 
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAI 526

Query: 61  LGLENLTSIKRLYLSEN 77
             L +   +  L L  N
Sbjct: 527 QPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 17/203 (8%)

Query: 4   NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL 63
                           L   +LS  +    +   L    +L+ L   +            
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENK----------W 383

Query: 64  ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANEL 123
             LT I  +   +      +    F  L  +      +    +    +          ++
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 124 ESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNG 183
             L L    +   +   L +   +  LDLS+  L  ++P +L  +  LE L  S+N L  
Sbjct: 444 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE- 499

Query: 184 TVSEIHFVNLTKLAFFRANGNSL 206
            V  +   NL +L       N L
Sbjct: 500 NVDGVA--NLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 31/241 (12%), Positives = 63/241 (26%), Gaps = 22/241 (9%)

Query: 233 RFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNP--- 289
                             + ++     R  W          +  ++              
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 290 -----SMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDI 344
                S+   T     L    +L           L          ++ L   K       
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI--ILLMRALDPLLYEKETLQYFS 409

Query: 345 PDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404
               ++ +R   L+   + F     +     + +  L+L +  L+ +     +    +  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTH 467

Query: 405 LDLGENELVGSIPSWIGERFSILKILNLRSNK---FHGDFPIQLCGLAFLQILDVASNSL 461
           LDL  N L  ++P  +      L++L    N      G     +  L  LQ L + +N L
Sbjct: 468 LDLSHNRLR-ALPPAL-AALRCLEVLQASDNALENVDG-----VANLPRLQELLLCNNRL 520

Query: 462 S 462
            
Sbjct: 521 Q 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 32/194 (16%), Positives = 57/194 (29%), Gaps = 36/194 (18%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGN-VS 59
           L    ++ +       L ++  +  +  +   +     + V  +E+  V    L    ++
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 60  SL-GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
            L  LE L  +  L LS N      +P +   L  L              S+        
Sbjct: 455 VLCHLEQLLLVTHLDLSHNRL--RALPPALAALRCLEVL---------QASD-------- 495

Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLS 177
             N LE++         +L         L  L L  N +   +    L     L  L+L 
Sbjct: 496 --NALENV-----DGVANLPR-------LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 178 NNKLNGTVSEIHFV 191
            N L         +
Sbjct: 542 GNSLCQEEGIQERL 555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 23/229 (10%)

Query: 375 LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRS 434
             S  +L L    L  I   +F N  ++  + +  +  +  + S      S +  + +R+
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 435 NKFHGDFPIQ-LCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRS 493
            +         L  L  L+ L + +  L     +   +L+ +  TD +    I  +   +
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGL-----KMFPDLTKVYSTDIFFILEITDNPYMT 144

Query: 494 EGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHN 553
                 F                + N   ++ +  N F+  +     N   L ++ L+ N
Sbjct: 145 SIPVNAF--------------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189

Query: 554 LLTGRIPDNI--GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600
                I  +   GV      LD+S   ++    + + +L  L   N   
Sbjct: 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 35/205 (17%), Positives = 74/205 (36%), Gaps = 20/205 (9%)

Query: 1   LSGNQFQGQIPSR-LGNLTSLKYLDLSSNELNSTV-LGWLSKVNDLEFLSVYSNRLQGNV 58
           L     +  IPS    NL ++  + +S +     +       ++ +  + + + R    +
Sbjct: 38  LIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96

Query: 59  SSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQD---ISEI-LGI 114
               L+ L  +K L +         +   F  L K+ S  + F     D   ++ I +  
Sbjct: 97  DPDALKELPLLKFLGIFNT-----GL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 115 FSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP---FSLGQISNL 171
           F   + NE  +L+L ++     +        +L+++ L+       I    F  G  S  
Sbjct: 151 FQ-GLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG-GVYSGP 207

Query: 172 EYLDLSNNKLNGTVSEIHFVNLTKL 196
             LD+S   +   +      +L +L
Sbjct: 208 SLLDVSQTSVT-ALPSKGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 35/241 (14%), Positives = 76/241 (31%), Gaps = 37/241 (15%)

Query: 169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSC 228
            + + L L    L  T+    F NL  ++    + +  + ++  +               
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHS-------------- 75

Query: 229 HLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDN 288
                      +  ++  ++I +TR    I       +    +L I    +         
Sbjct: 76  ---------FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK------MF 120

Query: 289 PSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW 348
           P +  + +       I ++++N    SI     QG    N    LKL  N F+  +    
Sbjct: 121 PDLTKVYSTDIFF--ILEITDNPYMTSIPVNAFQG--LCNETLTLKLYNNGFT-SVQGYA 175

Query: 349 MNWLRLRALNLGHNNFTGSLPMSI--GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406
            N  +L A+ L  N +   +      G  S    L++    ++ +     ++   L   +
Sbjct: 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

Query: 407 L 407
            
Sbjct: 236 T 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 28/209 (13%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L        +      L S+  +  +++++ S  +  +  + ++  L +  N+L      
Sbjct: 31  LKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT---DI 83

Query: 61  LGLENLTSIKRLYLSENDELGGKIP--TSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
             L NL ++  L+L EN     K+   +S   L KL S S+    +S DI+ ++ +    
Sbjct: 84  KPLANLKNLGWLFLDEN-----KVKDLSSLKDLKKLKSLSLEHNGIS-DINGLVHL---- 133

Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSN 178
              +LESL LG+++I   +T  L R  +L++L L +  +   I   L  ++ L+ L LS 
Sbjct: 134 --PQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSK 187

Query: 179 NKLNGTVSEIHFVNLTKLAFFRANGNSLI 207
           N ++  +  +    L  L          +
Sbjct: 188 NHIS-DLRALA--GLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 20/194 (10%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLY 73
           +  L ++  L L+ N+L  T +  L+ + +L +L +  N+++ ++S   L++L  +K L 
Sbjct: 64  IQYLPNVTKLFLNGNKL--TDIKPLANLKNLGWLFLDENKVK-DLS--SLKDLKKLKSLS 118

Query: 74  LSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI 133
           L  N   G         L +L S  +   K++ DI+ +  +       +L++L L  +QI
Sbjct: 119 LEHN---GISDINGLVHLPQLESLYLGNNKIT-DITVLSRL------TKLDTLSLEDNQI 168

Query: 134 FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNL 193
              +   L    +L +L LS   +   +  +L  + NL+ L+L + +        H  NL
Sbjct: 169 S-DIVP-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECL-NKPINHQSNL 223

Query: 194 TKLAFFRANGNSLI 207
                 +    SL+
Sbjct: 224 VVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 40/201 (19%), Positives = 79/201 (39%), Gaps = 38/201 (18%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLY 73
                     +L    +   V    +++N ++ +   ++ ++   S  G++ L ++ +L+
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLF 74

Query: 74  LSENDELGGKIP--TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSS 131
           L+ N     K+        L  L    +   K+  D+S +  +       +L+SL L  +
Sbjct: 75  LNGN-----KLTDIKPLANLKNLGWLFLDENKVK-DLSSLKDL------KKLKSLSLEHN 122

Query: 132 QI-----FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVS 186
            I       HL         L SL L N  +   I   L +++ L+ L L +N++    S
Sbjct: 123 GISDINGLVHLPQ-------LESLYLGNNKIT-DIT-VLSRLTKLDTLSLEDNQI----S 169

Query: 187 EIH-FVNLTKLAFFRANGNSL 206
           +I     LTKL     + N +
Sbjct: 170 DIVPLAGLTKLQNLYLSKNHI 190

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 37/179 (20%), Positives = 66/179 (36%), Gaps = 19/179 (10%)

Query: 12  SRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKR 71
           S L +L  LK L L  N +  + +  L  +  LE L + +N++  +++   L  LT +  
Sbjct: 106 SSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDT 160

Query: 72  LYLSENDELGGKIP--TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLG 129
           L L +N     +I        L KL +  +    +S D+  + G+        L+ L L 
Sbjct: 161 LSLEDN-----QISDIVPLAGLTKLQNLYLSKNHIS-DLRALAGL------KNLDVLELF 208

Query: 130 SSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEI 188
           S +      N        N++  ++  L      S         +     +    VS I
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 267

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 51/276 (18%), Positives = 101/276 (36%), Gaps = 63/276 (22%)

Query: 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNIL 388
                 L K + +  +    +N   +  +   +++   S+   I  L ++  L L  N L
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKL 80

Query: 389 SGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGL 448
           + I P    N  +L  L L EN++   + S   +    LK L+L  N       +    L
Sbjct: 81  TDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDINGLV--HL 133

Query: 449 AFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMK 508
             L+ L + +N ++      I  LS +             + L +               
Sbjct: 134 PQLESLYLGNNKIT-----DITVLSRL-------------TKLDT--------------- 160

Query: 509 GVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS 568
            + +E N I ++V                 +  L  LQ+L LS N ++      +  +++
Sbjct: 161 -LSLEDNQISDIV----------------PLAGLTKLQNLYLSKNHISD--LRALAGLKN 201

Query: 569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV 604
           ++ L+L + +   +     SNL   N +  ++ +LV
Sbjct: 202 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 1e-08
 Identities = 76/468 (16%), Positives = 140/468 (29%), Gaps = 104/468 (22%)

Query: 18  TSLKYLDLSSNELNSTVLGWLSKVN-DLEFLSVYSNRL-QGNVSSLG--LENLTSIKRLY 73
             ++ LD+   EL+      L  +    + + +    L +     +   L    ++  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 74  LSENDELGGKIPTSFGKL-----CKLTSFSMRFTKLS----QDISEILGIFSACVANELE 124
           L  N+ LG        +      CK+   S++   L+      +S  L          L+
Sbjct: 63  LRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTL-----RTLPTLQ 116

Query: 125 SLRLGSSQI----FGHLTNQLRR-FKRLNSLDLSNTILD----GSIPFSLGQISNLEYLD 175
            L L  + +       L   L     RL  L L    L       +   L    + + L 
Sbjct: 117 ELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT 176

Query: 176 LSNNKLNGT----VSEIHFVNLTKLAFFRANGNSL----------IFKINPNWVPPFQLT 221
           +SNN +N      + +    +  +L   +     +          I     +      L 
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS------LR 230

Query: 222 VLELRSCHLGPR-----FPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYF------ 270
            L L S  LG        P  L     L  L I    I+AK        + +        
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAK----GCGDLCRVLRAKESL 286

Query: 271 -YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGP------IFDLSNNALSGSIFHLICQG 323
             L+++GN++        +    L+    + L           + + + + +        
Sbjct: 287 KELSLAGNEL-------GDEGARLL---CETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336

Query: 324 ENFSNNIEFLKLSKNNFSGD----------IPDCWMNWLRLRALNLGHNNFT----GSLP 369
              +  +  L++S N                P        LR L L   + +     SL 
Sbjct: 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS-----VLRVLWLADCDVSDSSCSSLA 391

Query: 370 MSIGTLSSLLSLNLRNNILS-----GIIPTSFKNFSSLEVLDLGENEL 412
            ++    SL  L+L NN L       ++ +  +    LE L L +   
Sbjct: 392 ATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 68/433 (15%), Positives = 129/433 (29%), Gaps = 92/433 (21%)

Query: 43  DLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFT 102
           D++ L +    L     +  L  L   + + L +               C LT       
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD---------------CGLTEARC--- 45

Query: 103 KLSQDISEILGIFSACVANELESLRLGSSQI----FGHLTNQLRRFK-RLNSLDLSNTIL 157
              +DIS  L +  A     L  L L S+++       +   L+    ++  L L N  L
Sbjct: 46  ---KDISSALRVNPA-----LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 97

Query: 158 D----GSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPN 213
                G +  +L  +  L+ L LS+N L           L  L     +           
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDNLLGDA-------GLQLLCEGLLDPQC-------- 142

Query: 214 WVPPFQLTVLELRSCHLGPR----FPLWLQSQRELNDLDISSTRISAK----IPRGFWNS 265
                +L  L+L  C L           L+++ +  +L +S+  I+      + +G  +S
Sbjct: 143 -----RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197

Query: 266 IYQYFYLNISGNQIYG-GIPKFDN--PSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ 322
             Q   L +    +             S   +            L +N L       +C 
Sbjct: 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRE--------LALGSNKLGDVGMAELCP 249

Query: 323 GENFSN-NIEFLKLSKNNFSGD----IPDCWMNWLRLRALNLGHNNFTGSLPMSIG---- 373
           G    +  +  L + +   +      +         L+ L+L  N         +     
Sbjct: 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 309

Query: 374 -TLSSLLSLNLRNNILSG----IIPTSFKNFSSLEVLDLGENELVGSIPSWIGERF---- 424
                L SL +++   +        +       L  L +  N L  +    + +      
Sbjct: 310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 369

Query: 425 SILKILNLRSNKF 437
           S+L++L L     
Sbjct: 370 SVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 55/345 (15%), Positives = 113/345 (32%), Gaps = 72/345 (20%)

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD----------IPDCWMNWLRLR 355
            L +  L+ +    I      +  +  L L  N                P C     +++
Sbjct: 34  RLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSC-----KIQ 88

Query: 356 ALNLGHNNFT----GSLPMSIGTLSSLLSLNLRNNILSG-----IIPTSFKNFSSLEVLD 406
            L+L +   T    G L  ++ TL +L  L+L +N+L       +          LE L 
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 407 LGENELVGSIPSWIGERFSI---LKILNLRSNKFHGDFPIQLCGLAF------LQILDVA 457
           L    L  +    +          K L + +N    +  +++           L+ L + 
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQLEALKLE 207

Query: 458 SNSLSGTIPRCINNLSAMAITDSYDQAVILYS-SLRSEGQSEIFEDASLVMKGVLVEYNS 516
           S  ++        +L  +  + +  + + L S  L   G        + +  G+L   + 
Sbjct: 208 SCGVT---SDNCRDLCGIVASKASLRELALGSNKLGDVG-------MAELCPGLLHPSSR 257

Query: 517 ILNLVRSIDVSKNIFSGE----IPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR----- 567
           +  L     + +   + +    +   +   + L+ L+L+ N L      + G        
Sbjct: 258 LRTL----WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG-----DEGARLLCETL 308

Query: 568 -----SIESLDLSANQLSGQ----IPQSMSNLSFLNHLNLSNNNL 603
                 +ESL + +   +          ++   FL  L +SNN L
Sbjct: 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 57/336 (16%), Positives = 108/336 (32%), Gaps = 53/336 (15%)

Query: 306 DLSNNALSGSIFHLICQG-ENFSNNIEFLKLSKNNFS----GDIPDCWMNWLRLRALNLG 360
           +L +N L     H + QG +  S  I+ L L     +    G +         L+ L+L 
Sbjct: 62  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 121

Query: 361 HNNFTGSLPMSIGTL-----SSLLSLNLRNNILSGI----IPTSFKNFSSLEVLDLGENE 411
            N    +    +          L  L L    LS      + +  +     + L +  N+
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 412 L----VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGL----AFLQILDVASNSLSG 463
           +    V  +   + +    L+ L L S     D    LCG+    A L+ L + SN L  
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241

Query: 464 TIPRCINNLSAMAITDSY--DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLV 521
                +  L    +  S       I    + ++G  ++           ++     L   
Sbjct: 242 V---GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR---------VLRAKESL--- 286

Query: 522 RSIDVSKNIFSGE-----IPVEVTNLQGLQSLNLSHNLLTGR----IPDNIGVMRSIESL 572
           + + ++ N    E         +     L+SL +     T          +   R +  L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 573 DLSANQLSGQIPQSMS-----NLSFLNHLNLSNNNL 603
            +S N+L     + +        S L  L L++ ++
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 86/521 (16%), Positives = 160/521 (30%), Gaps = 124/521 (23%)

Query: 122 ELESLRLGSSQI-FGHLTNQLRRFKRLNSLDLSNTILD----GSIPFSLGQISNLEYLDL 176
           +++SL +   ++        L   ++   + L +  L       I  +L     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPR--- 233
            +N+L           L                      P  ++  L L++C L      
Sbjct: 64  RSNELGDVGVHCVLQGLQ--------------------TPSCKIQKLSLQNCCLTGAGCG 103

Query: 234 -FPLWLQSQRELNDLDISSTRISAK----IPRGFWNSIYQYFYLNISGNQIYGGIPKFDN 288
                L++   L +L +S   +       +  G  +   +   L +    +     +   
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 289 PSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN-NIEFLKLSKNNFSGD---- 343
             +       +L      +SNN ++ +   ++CQG   S   +E LKL     + D    
Sbjct: 164 SVLRAKPDFKEL-----TVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 344 IPDCWMNWLRLRALNLGHNNFTGS-----LPMSIGTLSSLLSLNLRNNILS----GIIPT 394
           +     +   LR L LG N           P  +   S L +L +    ++    G +  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 395 SFKNFSSLEVLDLGENEL----VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLC-GLA 449
             +   SL+ L L  NEL       +   + E    L+ L ++S  F           LA
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA 338

Query: 450 ---FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV 506
              FL  L +++N L                    D  V                     
Sbjct: 339 QNRFLLELQISNNRLE-------------------DAGVRELCQG--------------- 364

Query: 507 MKGVLVEYNSILNLVRSIDVSKNIFSGE----IPVEVTNLQGLQSLNLSHNLLTGRIPDN 562
               L +  S+L   R + ++    S      +   +     L+ L+LS+N L      +
Sbjct: 365 ----LGQPGSVL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-----GD 412

Query: 563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
            G+++ +ES+                    L  L L +   
Sbjct: 413 AGILQLVESV--------------RQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 68/484 (14%), Positives = 147/484 (30%), Gaps = 125/484 (25%)

Query: 169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSC 228
            +++ LD+   +L+                      + +  +           V+ L  C
Sbjct: 3   LDIQSLDIQCEELS------------------DARWAELLPLLQQ------CQVVRLDDC 38

Query: 229 HLGPR----FPLWLQSQRELNDLDISSTRISAK----IPRGFWNSIYQYFYLNISGNQIY 280
            L           L+    L +L++ S  +       + +G      +   L++    + 
Sbjct: 39  GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL- 97

Query: 281 GGIPKFDNPSMPLITTPSDLLGPI-----FDLSNNALSGSIFHLICQG-ENFSNNIEFLK 334
                       ++   S  L  +       LS+N L  +   L+C+G  +    +E L+
Sbjct: 98  ------TGAGCGVL---SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 335 LSKNNFSGDIPDCWMNWLR----LRALNLGHNNFTGSLPMSIGTL-----SSLLSLNLRN 385
           L   + S    +   + LR     + L + +N+   +    +          L +L L +
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 386 NILS----GIIPTSFKNFSSLEVLDLGENEL----VGSIPSWIGERFSILKILNLRSNKF 437
             ++      +     + +SL  L LG N+L    +  +   +    S L+ L +     
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-- 266

Query: 438 HGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN----NLSAMAITDSYDQAVILYSSLRS 493
                          I       L   +    +    +L+   + D   + +        
Sbjct: 267 --------------GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL-------- 304

Query: 494 EGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHN 553
               E   +    ++ + V+  S      +     +  S      +   + L  L +S+N
Sbjct: 305 ---CETLLEPGCQLESLWVKSCSF-----TAACCSHFSSV-----LAQNRFLLELQISNN 351

Query: 554 LLTGRIPDNIGVM----------RSIESLDLSANQLSGQ----IPQSMSNLSFLNHLNLS 599
            L      + GV             +  L L+   +S      +  ++     L  L+LS
Sbjct: 352 RLE-----DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 600 NNNL 603
           NN L
Sbjct: 407 NNCL 410

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 48/212 (22%), Positives = 67/212 (31%), Gaps = 31/212 (14%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
                    +P  L        L LS N L +  L  L     L  L++    L      
Sbjct: 17  CDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L  L     L LS N      +P     L  LT   + F +L   +    G       
Sbjct: 74  GTLPVLG---TLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRL-TSLPL--GALRGLG- 124

Query: 121 NELESLRLGSSQI-------FGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL-GQISNLE 172
            EL+ L L  +++                    L  L L+N  L   +P  L   + NL+
Sbjct: 125 -ELQELYLKGNELKTLPPGLLTPTPK-------LEKLSLANNNLT-ELPAGLLNGLENLD 175

Query: 173 YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGN 204
            L L  N L  T+ +  F     L F   +GN
Sbjct: 176 TLLLQENSLY-TIPKGFF-GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 13/143 (9%)

Query: 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNIL 388
           +   L LS+N          M + RL  LNL     T  L +  GTL  L +L+L +N L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL 89

Query: 389 SGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKF----HGDFPIQ 444
              +P   +   +L VLD+  N L  S+P         L+ L L+ N+      G     
Sbjct: 90  QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT-- 145

Query: 445 LCGLAFLQILDVASNSLSGTIPR 467
                 L+ L +A+N+L+  +P 
Sbjct: 146 --PTPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 11/119 (9%)

Query: 353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL 412
            L  L+L HN    SLP+   TL +L  L++  N L+ +   + +    L+ L L  NEL
Sbjct: 78  VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136

Query: 413 VGSIPSWIGERFSILKILNLRSNKF----HGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
             ++P  +      L+ L+L +N       G       GL  L  L +  NSL  TIP+
Sbjct: 137 K-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN----GLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%)

Query: 354 LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV 413
              +N    N T +LP  +        L+L  N+L      +   ++ L  L+L   EL 
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
             +   +     +L  L+L  N+     P+    L  L +LDV+ N L+ ++P 
Sbjct: 68  TKLQ--VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 40/232 (17%)

Query: 375 LSSLLSLNLRNNILSGI---IPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILN 431
           ++S L +N     L+ +   +P          +L L EN L  +        ++ L  LN
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKD------TTILHLSENLL-YTFSLATLMPYTRLTQLN 61

Query: 432 LRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSL 491
           L   +           L  L  LD++ N L  ++P     L A+         + +  + 
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQTLPAL-------TVLDVSFNR 111

Query: 492 RSEGQSEIFEDASLVMKGVLV-EYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNL 550
            +           L     L  + N +  L         + +            L+ L+L
Sbjct: 112 LTSLPLGAL--RGLGELQELYLKGNELKTL------PPGLLTP--------TPKLEKLSL 155

Query: 551 SHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN 601
           ++N LT  +P  +   + ++++L L  N L   IP+       L    L  N
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 27/196 (13%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLY 73
              L +    +L    +  T L    +++ ++  +  ++ +Q +++  G++  T++K L+
Sbjct: 15  DPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELH 69

Query: 74  LSENDELGGKIP--TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSS 131
           LS N     +I   +    L KL   S+   +    +  + GI SAC    L  L L ++
Sbjct: 70  LSHN-----QISDLSPLKDLTKLEELSVNRNR----LKNLNGIPSAC----LSRLFLDNN 116

Query: 132 QIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFV 191
           ++     + L   K L  L + N  L  SI   LG +S LE LDL  N++      +   
Sbjct: 117 ELR-DTDS-LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NTGGLT-- 169

Query: 192 NLTKLAFFRANGNSLI 207
            L K+ +    G   +
Sbjct: 170 RLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 29/172 (16%), Positives = 74/172 (43%), Gaps = 24/172 (13%)

Query: 12  SRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKR 71
                L+ ++  +  ++ + S  L  +    +L+ L +  N++  ++S   L++LT ++ 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQS--LAGMQFFTNLKELHLSHNQIS-DLS--PLKDLTKLEE 89

Query: 72  LYLSENDELGGKIPT-SFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGS 130
           L ++ N     ++   +      L+   +   +L  D   ++ + +      LE L + +
Sbjct: 90  LSVNRN-----RLKNLNGIPSACLSRLFLDNNELR-DTDSLIHLKN------LEILSIRN 137

Query: 131 SQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNNKL 181
           +++   +   L    +L  LDL  N I +      L ++  + ++DL+  K 
Sbjct: 138 NKL-KSIVM-LGFLSKLEVLDLHGNEITNTG---GLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 26/174 (14%), Positives = 59/174 (33%), Gaps = 24/174 (13%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLY 73
           L +LT L+ L ++ N L    L  +     L  L + +N L+ +     L +L +++ L 
Sbjct: 81  LKDLTKLEELSVNRNRL--KNLNGIPSAC-LSRLFLDNNELR-DTD--SLIHLKNLEILS 134

Query: 74  LSENDELGGKIP--TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSS 131
           +  N     K+      G L KL    +   +++ +   +  +       ++  + L   
Sbjct: 135 IRNN-----KLKSIVMLGFLSKLEVLDLHGNEIT-NTGGLTRL------KKVNWIDLTGQ 182

Query: 132 QIFGHLTNQLRRFKRLNSL-DLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGT 184
           +               N++ D     +    P+ +    +     +       T
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRWIS---PYYISNGGSYVDGCVLWELPVYT 233

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 357 LNLGHNNFTGSLP--MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414
           L+L HNN +  L    +   L++L SL L +N L+ I   +F    +L  LDL  N L  
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH- 101

Query: 415 SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
           ++  ++      L++L L +N            +A LQ L ++ N +S   P 
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 36/201 (17%), Positives = 58/201 (28%), Gaps = 62/201 (30%)

Query: 1   LSGNQFQGQIPSR--LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNV 58
           LS N    ++ +      LT+L  L LS N LN         V +L +L + SN L   +
Sbjct: 46  LSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TL 103

Query: 59  SSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC 118
                 +L +++ L L                                            
Sbjct: 104 DEFLFSDLQALEVLLLYN------------------------------------------ 121

Query: 119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSN---TILDGSIPFSLGQISNLEYLD 175
             N +  +   +   F  +         L  L LS    +     +     ++  L  LD
Sbjct: 122 --NHIVVVDRNA---FEDMAQ-------LQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169

Query: 176 LSNNKLNGTVSEIHFVNLTKL 196
           LS+NKL   +       L   
Sbjct: 170 LSSNKLK-KLPLTDLQKLPAW 189

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 1   LSGNQFQGQIPSR-LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           LS N     I S     + +L+YLDLSSN L++      S +  LE L +Y+N +   V 
Sbjct: 71  LSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVD 128

Query: 60  SLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV 119
               E++  +++LYLS+N ++            KL    +     ++     L       
Sbjct: 129 RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 120 ANELESLRLGS 130
           A     L L +
Sbjct: 188 AWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 534 EIPVEV-TNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQLSGQIPQSMSNLS 591
            I  E    +  L+ L+LS N L   + + +   ++++E L L  N +      +  +++
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 592 FLNHLNLSNNNL 603
            L  L LS N +
Sbjct: 137 QLQKLYLSQNQI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 22/169 (13%)

Query: 271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN-- 328
            L++S N +     ++    +  + +          LS+N L+  I       E F    
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHS--------LLLSHNHLN-FI-----SSEAFVPVP 88

Query: 329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNI 387
           N+ +L LS N+        + +   L  L L +N+    +  +    ++ L  L L  N 
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 388 LSGIIPTSFKNFS---SLEVLDLGENELVGSIPSWIGERFSILKILNLR 433
           +S       K+ +    L +LDL  N+L   +P    ++        L 
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 541 NLQGLQSLNLSHNLLTGRIP----DNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNH- 595
           ++  LQ L LS N ++ R P     +   +  +  LDLS+N+L       +  L      
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN 192

Query: 596 -LNLSNNNL 603
            L L NN L
Sbjct: 193 GLYLHNNPL 201

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 57/346 (16%), Positives = 106/346 (30%), Gaps = 67/346 (19%)

Query: 123 LESLRLGSSQI----FGHLTNQLRRFKRLNSLDLS-NTILDG---SIPFSLGQISNLEYL 174
           +E   L    I       +   L     +  + LS NTI       +  ++    +LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 175 DLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPR- 233
           + S+        EI           R    +L     P       L  + L     GP  
Sbjct: 66  EFSDIFTGRVKDEI-------PEALRLLLQAL--LKCPK------LHTVRLSDNAFGPTA 110

Query: 234 ---FPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPS 290
                 +L     L  L + +  +  +                 +G +I   + +     
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQ-----------------AGAKIARALQELAVNK 153

Query: 291 MPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD-----IP 345
                 P   +        N L         +       +  +K+ +N    +     + 
Sbjct: 154 KAKNAPPLRSI----ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 346 DCWMNWLRLRALNLGHNNFTG----SLPMSIGTLSSLLSLNLRNNILSG----IIPTSFK 397
           +       L+ L+L  N FT     +L +++ +  +L  L L + +LS      +  +F 
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 398 NFS--SLEVLDLGENEL----VGSIPSWIGERFSILKILNLRSNKF 437
                 L+ L L  NE+    V ++ + I E+   L  L L  N+F
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 33/201 (16%), Positives = 65/201 (32%), Gaps = 33/201 (16%)

Query: 14  LGNLTSLKYLDLSSNELN-------STVLGWLSKVNDLEFLSVYSNRLQG----NVSSLG 62
           L    S+K + LS N +        S  +     +   EF  +++ R++      +  L 
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87

Query: 63  --LENLTSIKRLYLSEN---DELGGKIPTSFGKLCKLTSFSMRFTKLS----QDISEILG 113
             L     +  + LS+N         +     K   L    +    L       I+  L 
Sbjct: 88  QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQ 147

Query: 114 IFSACVANE----LESLRLGSSQIFG----HLTNQLRRFKRLNSLDLS-NTILDGSIPFS 164
             +     +    L S+  G +++            +  + L+++ +  N I    I   
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 165 LGQI----SNLEYLDLSNNKL 181
           L +       L+ LDL +N  
Sbjct: 208 LLEGLAYCQELKVLDLQDNTF 228

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 50/402 (12%), Positives = 117/402 (29%), Gaps = 108/402 (26%)

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD----IPDCWMNWLRLRALNLGH 361
            L  +A++      +       ++++ + LS N    +    + +   +   L       
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS- 68

Query: 362 NNFTG-----------SLPMSIGTLSSLLSLNLRNNILS--GIIP--TSFKNFSSLEVLD 406
           + FTG            L  ++     L ++ L +N        P        + LE L 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 407 LGENE------------LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAF---- 450
           L  N             L     +   +    L+ +    N+   +  ++     F    
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHR 187

Query: 451 -LQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG 509
            L  + +  N                               +R EG   +  +       
Sbjct: 188 LLHTVKMVQN------------------------------GIRPEGIEHLLLEG------ 211

Query: 510 VLVEYNSILNLVRSIDVSKNIFSGE----IPVEVTNLQGLQSLNLSHNLLTGR----IPD 561
             + Y   L   + +D+  N F+      + + + +   L+ L L+  LL+ R    + D
Sbjct: 212 --LAYCQEL---KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266

Query: 562 NIGVM--RSIESLDLSANQLSGQ----IPQSM-SNLSFLNHLNLSNNNLVGKIPSSTQLQ 614
               +    +++L L  N++       +   +   +  L  L L+ N          +  
Sbjct: 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN----------RFS 316

Query: 615 SFGASSFAGNDLCGDPLSNCTEKNVLVPEDENGDGNEDDDED 656
                     ++     S      +   +D     +E+++++
Sbjct: 317 EEDDVVDEIREV----FSTRGRGELDELDDMEELTDEEEEDE 354

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 38/223 (17%), Positives = 65/223 (29%), Gaps = 47/223 (21%)

Query: 1   LSGNQFQGQ----IPSRLGNLTSLKYLDLSSNELN----------STVLGWLSKVNDLEF 46
           LSGN    +    +   + +   L+  + S                 +L  L K   L  
Sbjct: 39  LSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98

Query: 47  LSVYSNRLQGN-VSSLG--LENLTSIKRLYLSEND--ELGGKI----------PTSFGKL 91
           + +  N         L   L   T ++ LYL  N      G                   
Sbjct: 99  VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA 158

Query: 92  CKLTSFSMRFTKLS----QDISEILGIFSACVANELESLRLGSSQIFGH-----LTNQLR 142
             L S      +L     ++ ++            L ++++  + I        L   L 
Sbjct: 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRL-----LHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 143 RFKRLNSLDLS-NTILDG---SIPFSLGQISNLEYLDLSNNKL 181
             + L  LDL  NT       ++  +L    NL  L L++  L
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 3/78 (3%)

Query: 1   LSGNQFQGQIPSRL-GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           L GN+   ++P  L   L SL+ L L++N++N   +     +++L  LS+Y N+LQ  ++
Sbjct: 87  LYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIA 144

Query: 60  SLGLENLTSIKRLYLSEN 77
                 L +I+ ++L++N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
           + L  N      P +      L  ++L NN +S + P +F+   SL  L L  N++   +
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95

Query: 417 PSWIGERFSILKILNLRSNKF----HGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
           P  + E    L++L L +NK        F      L  L +L +  N L  TI +
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQ----DLHNLNLLSLYDNKLQ-TIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 15/134 (11%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N  +   P        L+ +DLS+N+++         +  L  L +Y N++      
Sbjct: 39  LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT----E 94

Query: 61  LG---LENLTSIKRLYLSENDELGGKIPT-SFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
           L     E L S++ L L+ N ++   +   +F  L  L   S+   KL    +   G FS
Sbjct: 95  LPKSLFEGLFSLQLLLLNAN-KI-NCLRVDAFQDLHNLNLLSLYDNKLQ---TIAKGTFS 149

Query: 117 ACVANELESLRLGS 130
              A  ++++ L  
Sbjct: 150 PLRA--IQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 31/162 (19%)

Query: 18  TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSEN 77
            ++  + L  N +     G  S    L  + + +N++   ++    + L S+  L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 78  DELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHL 137
            ++     + F  L  L    +                    AN++  LR+     F  L
Sbjct: 91  -KITELPKSLFEGLFSLQLLLLN-------------------ANKINCLRVD---AFQDL 127

Query: 138 TNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
            N       LN L L +  L      +   +  ++ + L+ N
Sbjct: 128 HN-------LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 1   LSGNQFQGQIPSRL-GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           L+ N+ +  +  ++   L SLK L L SN +          ++ +  LS+Y N++   V+
Sbjct: 88  LTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145

Query: 60  SLGLENLTSIKRLYLSEN 77
               + L S+  L L  N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%)

Query: 357 LNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415
           L L +N FT      I   L  L  +N  NN ++ I   +F+  S +  + L  N L  +
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 416 IPSWIGERFSILKILNLRSNKF----HGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
           +   + +    LK L LRSN+     +  F     GL+ +++L +  N ++ T+  
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFI----GLSSVRLLSLYDNQIT-TVAP 146

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 5/107 (4%)

Query: 1   LSGNQFQGQIPSR--LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNV 58
           L+ N+F   + +      L  L+ ++ S+N++     G     + +  + + SNRL+ NV
Sbjct: 39  LNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NV 96

Query: 59  SSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLS 105
                + L S+K L L  N  +      SF  L  +   S+   +++
Sbjct: 97  QHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQIT 142

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 12/142 (8%)

Query: 331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILS 389
           E L L     +      +    +L  LNL +N    +L   +   L+ L +L L NN L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 390 GIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKF----HGDFPIQL 445
            +    F + + L+ L LG N+L  S+PS + +R + LK L L +N+      G F    
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD--- 152

Query: 446 CGLAFLQILDVASNSLSGTIPR 467
             L  LQ L +++N L  ++P 
Sbjct: 153 -KLTNLQTLSLSTNQLQ-SVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 47/210 (22%), Positives = 74/210 (35%), Gaps = 68/210 (32%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L          +    LT L +L+L  N+L +   G    + +L  L + +N+L  ++  
Sbjct: 42  LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPL 100

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR-FTKLSQDISEILGIFSACV 119
              ++LT + +LYL  N               +L S     F +L++             
Sbjct: 101 GVFDHLTQLDKLYLGGN---------------QLKSLPSGVFDRLTK------------- 132

Query: 120 ANELESLRLGSSQIFGHLTNQLRR-----FKRLNSLDLSNTILDGSIPFSLGQISNLEYL 174
              L+ LRL         TNQL+      F +L                     +NL+ L
Sbjct: 133 ---LKELRLN--------TNQLQSIPAGAFDKL---------------------TNLQTL 160

Query: 175 DLSNNKLNGTVSEIHFVNLTKLAFFRANGN 204
            LS N+L  +V    F  L KL      GN
Sbjct: 161 SLSTNQLQ-SVPHGAFDRLGKLQTITLFGN 189

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDN-IGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
           +    +   + L  L + +      +    +  +  + +L +  + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 593 LNHLNLSNNNL 603
           L+ LNLS N L
Sbjct: 82  LSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 353 RLRALNLGHNNFTGSLP-MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE 411
            L  L + +      L    +  L  L +L +  + L  + P +F     L  L+L  N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 412 LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRC 468
           L  S+     +  S L+ L L  N  H       C L +LQ  +             
Sbjct: 92  LE-SLSWKTVQGLS-LQELVLSGNPLHCS-----CALRWLQRWEEEGLGGVPEQKLQ 141

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 4/89 (4%)

Query: 518 LNLVRSIDVSKNIFSGEIPVEV-TNLQGLQSLNLSHNLLTGRIPDNIGV-MRSIESLDLS 575
              +  + +        + +     L  L++L +  + L   +  +       +  L+LS
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 576 ANQLSGQIPQSMSNLSFLNHLNLSNNNLV 604
            N L     +++  LS L  L LS N L 
Sbjct: 89  FNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 367 SLPMSIGTLSSLLSLNLR-NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFS 425
                +    +L  L +     L  +     +    L  L + ++ L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 426 ILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSL 461
            L  LNL  N         + GL+ LQ L ++ N L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 533 GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
           G++       + L+ L+  +  LT  I  N+  +  ++ L+LS N++SG +         
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 593 LNHLNLSNNNL 603
           L HLNLS N +
Sbjct: 90  LTHLNLSGNKI 100

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 7/87 (8%)

Query: 329 NIEFLKLSKNNFS--GDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN 386
            +EFL       +   ++P       +L+ L L  N  +G L +      +L  LNL  N
Sbjct: 43  ELEFLSTINVGLTSIANLPKLN----KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

Query: 387 ILSGI-IPTSFKNFSSLEVLDLGENEL 412
            +  +      K   +L+ LDL   E+
Sbjct: 99  KIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
           L     + +K L L  +    GK+     +  +L   S     L+      +        
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----IANLPKL-- 63

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNN 179
           N+L+ L L  +++ G L     +   L  L+LS N I D S    L ++ NL+ LDL N 
Sbjct: 64  NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 54/190 (28%)

Query: 17  LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSE 76
           L +++YL L  N+L+   +  L ++ +L +L +  N+LQ ++ +   + LT++K L L E
Sbjct: 62  LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVE 118

Query: 77  NDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQI--- 133
           N               +L S                G+F       L  L L  +Q+   
Sbjct: 119 N---------------QLQSLPD-------------GVFDKLT--NLTYLNLAHNQLQSL 148

Query: 134 ----FGHLTNQLRRFKRLNSLDLSNTILDGSIP---FSLGQISNLEYLDLSNNKLNGTVS 186
               F  LTN       L  LDLS   L  S+P   F   +++ L+ L L  N+L  +V 
Sbjct: 149 PKGVFDKLTN-------LTELDLSYNQL-QSLPEGVFD--KLTQLKDLRLYQNQLK-SVP 197

Query: 187 EIHFVNLTKL 196
           +  F  LT L
Sbjct: 198 DGVFDRLTSL 207

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 28/158 (17%)

Query: 1   LSGNQFQGQIPSRLG---NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGN 57
           L GN+        +     LT+L YL L+ N+L S   G   K+ +L+ L +  N+LQ +
Sbjct: 70  LGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-S 123

Query: 58  VSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSA 117
           +     + LT++  L L+ N +L       F KL  LT   + + +L Q + E  G+F  
Sbjct: 124 LPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL-QSLPE--GVFD- 178

Query: 118 CVANELESLRLGSSQIFGHLTNQLRR-----FKRLNSL 150
                    +L   +      NQL+      F RL SL
Sbjct: 179 ---------KLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 533 GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF 592
           G+I         L+ L+L +  L   +  N+  +  ++ L+LS N++ G +      L  
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 593 LNHLNLSNNNL 603
           L HLNLS N L
Sbjct: 97  LTHLNLSGNKL 107

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L GNQF   +P  L N   L  +DLS+N +++      S +  L  L +  NRL+     
Sbjct: 38  LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR----C 92

Query: 61  L--GL-ENLTSIKRLYLSEND 78
           +     + L S++ L L  ND
Sbjct: 93  IPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
           L L  N FT  +P  +     L  ++L NN +S +   SF N + L  L L  N L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCI 93

Query: 417 PSWIGERFSILKILNLRSNK 436
           P    +    L++L+L  N 
Sbjct: 94  PPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 1/77 (1%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N+          N+T L  L LS N L          +  L  LS++ N +   V  
Sbjct: 61  LSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

Query: 61  LGLENLTSIKRLYLSEN 77
               +L+++  L +  N
Sbjct: 120 GAFNDLSALSHLAIGAN 136

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL-GLENLTSIKRL 72
           L  + +L+ L L  N +   +    +  + LE L +  N++    +SL G+E L +++ L
Sbjct: 66  LSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQI----ASLSGIEKLVNLRVL 120

Query: 73  YLSEN 77
           Y+S N
Sbjct: 121 YMSNN 125

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 534 EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFL 593
           ++   ++ L+  + L LS N +  +I  ++  M ++  L L  N +  +I    +    L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTL 95

Query: 594 NHLNLSNNNL 603
             L +S N +
Sbjct: 96  EELWISYNQI 105

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 541 NLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600
            ++ L+ L+L  NL+  +I +   V  ++E L +S NQ++  +   +  L  L  L +SN
Sbjct: 68  GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSN 124

Query: 601 NNL-----VGKIPSSTQLQSFGASSFAGNDLCGDPLSNCTEKN 638
           N +     + K+ +  +L+       AGN L  D   N     
Sbjct: 125 NKITNWGEIDKLAALDKLEDL---LLAGNPLYNDYKENNATSE 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  NQ     P    +L +LK L L SN+L +  +G    +  L  L + +N+L      
Sbjct: 47  LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT----V 102

Query: 61  L--GL-ENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKL 104
           L   + + L  +K L++  N +L  ++P    +L  LT  ++   +L
Sbjct: 103 LPSAVFDRLVHLKELFMCCN-KL-TELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 22/137 (16%)

Query: 67  TSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESL 126
           T+ + LYL +N ++    P  F  L  L    +   +L   +    G+F +    +L  L
Sbjct: 40  TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQL-GALPV--GVFDSLT--QLTVL 93

Query: 127 RLGSSQ-------IFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
            LG++Q       +F  L +       L  L +    L   +P  + ++++L +L L  N
Sbjct: 94  DLGTNQLTVLPSAVFDRLVH-------LKELFMCCNKL-TELPRGIERLTHLTHLALDQN 145

Query: 180 KLNGTVSEIHFVNLTKL 196
           +L  ++    F  L+ L
Sbjct: 146 QLK-SIPHGAFDRLSSL 161

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 541 NLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600
            L    +++ S N +  ++ D   ++R +++L ++ N++          L  L  L L+N
Sbjct: 40  TLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97

Query: 601 NNL 603
           N+L
Sbjct: 98  NSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 23/123 (18%), Positives = 35/123 (28%), Gaps = 13/123 (10%)

Query: 319 LICQGENFSN--NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLS 376
           LI Q   ++N      L L        I +      +  A++   N     L      L 
Sbjct: 8   LIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLR 64

Query: 377 SLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG----ERFSILKILNL 432
            L +L + NN +  I     +    L  L L  N     +              L  L +
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS----LVELGDLDPLASLKSLTYLCI 120

Query: 433 RSN 435
             N
Sbjct: 121 LRN 123

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 33/186 (17%), Positives = 70/186 (37%), Gaps = 19/186 (10%)

Query: 14  LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGL----ENLTSI 69
           L   + L+ L L    L+  ++  L+K ++L  L++         S   L     + + +
Sbjct: 114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLLSSCSRL 170

Query: 70  KRLYLSENDELGGK-IPTSFGKLC-KLTSFSMRFTKLSQDISE--ILGIFSACVANELES 125
             L LS   +   K +  +   +   +T      +   +++ +  +  +   C    L  
Sbjct: 171 DELNLSWCFDFTEKHVQVAVAHVSETITQL--NLSGYRKNLQKSDLSTLVRRC--PNLVH 226

Query: 126 LRL-GSSQIFGHLTNQLRRFKRLNSLDLSNT--ILDGSIPFSLGQISNLEYLDLSNNKLN 182
           L L  S  +      +  +   L  L LS    I+  ++   LG+I  L+ L +     +
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVFGIVPD 285

Query: 183 GTVSEI 188
           GT+  +
Sbjct: 286 GTLQLL 291

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  N+ Q         LT L  L LS N++ S   G   K+  L  L ++ N+LQ    S
Sbjct: 35  LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ----S 90

Query: 61  L--GL-ENLTSIKRLYLSENDELGGKIPTSFGKLCKLT 95
           L  G+ + LT +K L L  N +L       F +L  L 
Sbjct: 91  LPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQ 127

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 1   LSGNQFQGQIPSRL-GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           LS NQ Q  +P  +   LT L  L L  N+L S   G   K+  L+ L++ +N+L+ +V 
Sbjct: 59  LSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVP 116

Query: 60  SLGLENLTSIKRLYLSEN 77
               + LTS+++++L  N
Sbjct: 117 DGIFDRLTSLQKIWLHTN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414
             L+L  N+           L+SL  L L  N L  +    F   +SL  L+L  N+L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 415 SIPSWIGERFSILKILNLRSNKF----HGDFPIQLCGLAFLQILDVASNSLSGTIPR 467
           S+P+ + ++ + LK L L +N+      G F      L  L+ L +  N L  ++P 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----KLTQLKDLRLYQNQLK-SVPD 141

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 357 LNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS 415
           L L  N         + G L  L+ L L+ N L+GI P +F+  S ++ L LGEN++   
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KE 92

Query: 416 IPSWIGERFSILKILNLRSNK 436
           I + +      LK LNL  N+
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQ 113

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%)

Query: 1   LSGNQFQGQIPSRL-GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVS 59
           L  NQ  G I        + ++ L L  N++          ++ L+ L++Y N++   V 
Sbjct: 61  LKRNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS-CVM 118

Query: 60  SLGLENLTSIKRLYLSEN 77
               E+L S+  L L+ N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 54/343 (15%), Positives = 116/343 (33%), Gaps = 64/343 (18%)

Query: 307 LSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM--------NWLRLRALN 358
           ++         + + +  +  + +  L LS NN         +            + +LN
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLN 57

Query: 359 LGHNNFTGSLPMSIGTL-----SSLLSLNLRNNILS-----GIIPTSFKNFSSLEVLDLG 408
           L  N+        +  +     +++ SLNL  N LS      ++ T      ++ VLDLG
Sbjct: 58  LSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117

Query: 409 ENEL----VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGL-----AFLQILDVASN 459
            N+                 + +  LNLR N        +L  +     A +  L++  N
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

Query: 460 SLSGTIPRCINNLSAMAITDSYDQAVILYSS---LRSEGQSEIFEDASLVMKGVLVEYNS 516
           +L+    +    L A  +         L  S   L  +  +E+          +     +
Sbjct: 178 NLA---SKNCAEL-AKFLASIPASVTSLDLSANLLGLKSYAELAY--------IFSSIPN 225

Query: 517 ILNLVRSIDVSKNIFSGE----IPVEVTNLQGLQSLNLSHNLLTGRIPDN-------IGV 565
            +    S+++  N   G     + +   +L+ LQ++ L ++++     +           
Sbjct: 226 HV---VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282

Query: 566 MRSIESLDLSANQLSG----QIPQSMSNLSF-LNHLNLSNNNL 603
           ++ I  +D +  ++       I   +  LS   +  +L N  L
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L  NQ     P     LT L  LDL +N+L     G   K+  L  LS+  N+L+ ++  
Sbjct: 37  LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPR 95

Query: 61  LGLENLTSIKRLYLSEN 77
              +NL S+  ++L  N
Sbjct: 96  GAFDNLKSLTHIWLLNN 112

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 7e-04
 Identities = 27/183 (14%), Positives = 60/183 (32%), Gaps = 30/183 (16%)

Query: 6   FQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLEN 65
            Q  +   L  +  L  L +      S        +  LE +S         V  +   +
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLP--DSVVEDILGSD 217

Query: 66  LTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELES 125
           L ++++L L    E  G                        D++    +FS      L+ 
Sbjct: 218 LPNLEKLVLYVGVEDYG---------------------FDGDMNVFRPLFSKDRFPNLKW 256

Query: 126 LRLGSSQIFGHLTNQL---RRFKRLNSLDLS-NTILDG---SIPFSLGQISNLEYLDLSN 178
           L +  ++    +           +L ++D+S   + D     +   + +I +L+++++  
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316

Query: 179 NKL 181
           N L
Sbjct: 317 NYL 319

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 7e-04
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNIG---VMRSIESLDLSANQLSG----QIPQSMSNLSF 592
                L+ L +        + +      ++  +E++D+SA  L+      +   +  +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 593 LNHLNLSNNNL 603
           L  +N+  N L
Sbjct: 309 LKFINMKYNYL 319

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 36/189 (19%), Positives = 56/189 (29%), Gaps = 34/189 (17%)

Query: 16  NLTSLKYLDLSSNELNSTVLGWLSKVND----LEFLSVYSNRLQGNVSSLGLENL----T 67
              +LK LDL  ++++     WLS   D    L  L++    L   VS   LE L     
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LASEVSFSALERLVTRCP 211

Query: 68  SIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLR 127
           ++K L L+    L   + T   +  +L                                 
Sbjct: 212 NLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVR-------------------- 250

Query: 128 LGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSE 187
                ++  L+  L   K L  L      +   +P      S L  L+LS   +      
Sbjct: 251 ---PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 188 IHFVNLTKL 196
                  KL
Sbjct: 308 KLLCQCPKL 316

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	743
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.36
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.14
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.12
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.1
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.23
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.62

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.4e-72  Score=647.84  Aligned_cols=612  Identities=30%  Similarity=0.411  Sum_probs=478.1

Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCch--hhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchh
Q 041683           10 IPSRLGNLTSLKYLDLSSNELNSTVLG--WLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTS   87 (743)
Q Consensus        10 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~   87 (743)
                      +|+.|.++++|++|||++|.+.+..|.  .|+++++|++|+|++|.+++.+|...+.++++|++||++ ++.+++..|..
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~  170 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS-ANSISGANVVG  170 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC-SSCCEEETHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC-CCccCCcCChh
Confidence            347899999999999999999887777  899999999999999999877777444889999999999 66787777776


Q ss_pred             ---ccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchh
Q 041683           88 ---FGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS  164 (743)
Q Consensus        88 ---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  164 (743)
                         +.++++|++|++++|.+.+..+.  ..++     +|++|++++|.+.+.+|. +.++++|++|++++|.+++.+|..
T Consensus       171 ~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~-----~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~  242 (768)
T 3rgz_A          171 WVLSDGCGELKHLAISGNKISGDVDV--SRCV-----NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA  242 (768)
T ss_dssp             HHHTTCCTTCCEEECCSSEEESCCBC--TTCT-----TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH
T ss_pred             hhhhccCCCCCEEECCCCcccccCCc--ccCC-----cCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH
Confidence               78899999999999988775543  4444     899999999999888877 999999999999999999889999


Q ss_pred             ccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCC-ccccEEEcCCCcCCCCcchhhcCCCC
Q 041683          165 LGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP-FQLTVLELRSCHLGPRFPLWLQSQRE  243 (743)
Q Consensus       165 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~l~~l~~  243 (743)
                      |+++++|++|++++|++.+.++..   .+++|++|++++|.+.+.++..+... ++|++|++++|.+.+..|..+..+++
T Consensus       243 l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          243 ISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             TTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             HhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            999999999999999998777762   78899999999999988888877765 88999999999998888999999999


Q ss_pred             CCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCC-C-C-CCCc-ccCCCCC--------------CCCeE
Q 041683          244 LNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFD-N-P-SMPL-ITTPSDL--------------LGPIF  305 (743)
Q Consensus       244 L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~-~-~~~~-~~~~~~l--------------~~~~l  305 (743)
                      |++|++++|.+++.+|...+..+++|++|++++|.+.+.+|... . . .+.. .+..+.+              .-..+
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            99999999999888888767778899999999999887776521 1 0 1111 1111111              01256


Q ss_pred             EecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccC
Q 041683          306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRN  385 (743)
Q Consensus       306 ~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  385 (743)
                      ++++|.+.+.+|..+.    .+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus       400 ~L~~n~l~~~~p~~l~----~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  475 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLS----NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF  475 (768)
T ss_dssp             ECCSSEEEEECCGGGG----GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             ECCCCccccccCHHHh----cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence            6666666666554443    366777777777777777777777777777777777777777777777777777777777


Q ss_pred             ccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccccc
Q 041683          386 NILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI  465 (743)
Q Consensus       386 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  465 (743)
                      |.+++..|..+..+++|++|++++|++.+.+|.++. .+++|++|++++|++.+.+|..+..+++|+.|++++|++.|.+
T Consensus       476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence            777777777777777777777777777777776665 5777777777777777777777777777777777777777777


Q ss_pred             CccccccccccccCccchhhhhh-c---------------cccCCCC--------cccccccceeeeceeeehhcccccc
Q 041683          466 PRCINNLSAMAITDSYDQAVILY-S---------------SLRSEGQ--------SEIFEDASLVMKGVLVEYNSILNLV  521 (743)
Q Consensus       466 p~~~~~l~~L~~~~~~~~~~~~~-~---------------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~L  521 (743)
                      |..+.....+............+ .               .+.+...        ..........+.|........++.|
T Consensus       555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L  634 (768)
T 3rgz_A          555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM  634 (768)
T ss_dssp             CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred             ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence            77665544432211100000000 0               0000000        0000111233455556666778899


Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                      +.||+++|+++|.+|..++++++|+.|+|++|+++|.+|+.|+.+++|++|||++|+++|.+|..+..+++|++||+++|
T Consensus       635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcccCCCCCccccCC-CCCCCCCCCCCCCC
Q 041683          602 NLVGKIPSSTQLQSFGASSFAGN-DLCGDPLSNCTEKN  638 (743)
Q Consensus       602 ~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c~~~~  638 (743)
                      +++|.||..+++.++...+|.|| .|||.|+..|....
T Consensus       715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~  752 (768)
T 3rgz_A          715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN  752 (768)
T ss_dssp             EEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC
T ss_pred             cccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCc
Confidence            99999999999999999999999 89999988886443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.5e-65  Score=589.10  Aligned_cols=607  Identities=29%  Similarity=0.416  Sum_probs=472.7

Q ss_pred             CCCCcCCCC---CCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcc-cccCCCCCCEEEcCC
Q 041683            1 LSGNQFQGQ---IPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL-GLENLTSIKRLYLSE   76 (743)
Q Consensus         1 Ls~n~i~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~Ls~   76 (743)
                      |+++.+.|.   +|++|.++++|+.++++.+.+.. .|..|+.+++|++|+|++|.+++.+|.. .++++++|++|+++ 
T Consensus        57 L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls-  134 (768)
T 3rgz_A           57 LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS-  134 (768)
T ss_dssp             CTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC-
T ss_pred             CCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc-
Confidence            567788887   88899999999999999998743 4578999999999999999999777652 58999999999999 


Q ss_pred             CCcCCcccchhc-cCCCCCCEEEccCCcCcccchhh---hhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEEC
Q 041683           77 NDELGGKIPTSF-GKLCKLTSFSMRFTKLSQDISEI---LGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDL  152 (743)
Q Consensus        77 ~~~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L  152 (743)
                      ++.+.+..|..+ .++++|++|++++|.+++..+..   +..++     +|++|++++|.+.+..+  +..+++|++|++
T Consensus       135 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L  207 (768)
T 3rgz_A          135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG-----ELKHLAISGNKISGDVD--VSRCVNLEFLDV  207 (768)
T ss_dssp             SSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT-----TCCEEECCSSEEESCCB--CTTCTTCCEEEC
T ss_pred             CCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC-----CCCEEECCCCcccccCC--cccCCcCCEEEC
Confidence            677877777766 89999999999999999887776   56666     99999999999987766  489999999999


Q ss_pred             cCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCC
Q 041683          153 SNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGP  232 (743)
Q Consensus       153 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~  232 (743)
                      ++|.+++.+|. ++++++|++|++++|++++.++. .+..+++|++|++++|.+.+..+..  .+++|++|++++|.+.+
T Consensus       208 s~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~  283 (768)
T 3rgz_A          208 SSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG  283 (768)
T ss_dssp             CSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred             cCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence            99999987776 99999999999999999977776 7999999999999999998776654  78899999999999998


Q ss_pred             CcchhhcCC-CCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCC--CCC-CCCCc-ccCCCCCC------
Q 041683          233 RFPLWLQSQ-RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK--FDN-PSMPL-ITTPSDLL------  301 (743)
Q Consensus       233 ~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~-~~~~~-~~~~~~l~------  301 (743)
                      .+|..+... ++|++|++++|.+++.+|..+ ..+++|++|++++|.+.+.+|.  +.. ..++. .+..+.+.      
T Consensus       284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~  362 (768)
T 3rgz_A          284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES  362 (768)
T ss_dssp             SCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT
T ss_pred             ccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH
Confidence            888888775 999999999999988787765 5589999999999999877774  221 12221 22222111      


Q ss_pred             -------CCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 041683          302 -------GPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGT  374 (743)
Q Consensus       302 -------~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  374 (743)
                             -..+++++|.+++.++..++.  ..+++|++|++++|++.+.+|..+..+++|++|++++|++++..|..+..
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~  440 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS  440 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc
Confidence                   115566666665555443321  11456777777777777777777777777777777777777777777777


Q ss_pred             CCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEE
Q 041683          375 LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQIL  454 (743)
Q Consensus       375 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  454 (743)
                      +++|++|++++|.+.+..|..+..+++|++|++++|++.+.+|..+. .+++|++|++++|++.+.+|..+..+++|++|
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  519 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAIL  519 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence            77777777777777777777777777777777777777777776654 57777777777777777777777777777777


Q ss_pred             EccCCccccccCccccccccccccCccchhhhhhccccCCCCccccccccee----------------------------
Q 041683          455 DVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV----------------------------  506 (743)
Q Consensus       455 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------  506 (743)
                      ++++|++.+.+|..+.+++.|+..+...+      .+.+..+..........                            
T Consensus       520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N------~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          520 KLSNNSFSGNIPAELGDCRSLIWLDLNTN------LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             ECCSSCCEEECCGGGGGCTTCCEEECCSS------EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             ECCCCcccCcCCHHHcCCCCCCEEECCCC------ccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            77777777777777777776644222111      11111111222211000                            


Q ss_pred             --eeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCC
Q 041683          507 --MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP  584 (743)
Q Consensus       507 --~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  584 (743)
                        +.+........++.+..++++.|.+.|.+|..+..+++|+.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence              000011111223444556666777777777788888999999999999999999999999999999999999999999


Q ss_pred             ccccCcCCCCeeeCcCCcccccCCCC-cccCCCCCccccCCCCCCCC
Q 041683          585 QSMSNLSFLNHLNLSNNNLVGKIPSS-TQLQSFGASSFAGNDLCGDP  630 (743)
Q Consensus       585 ~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n~l~~~~  630 (743)
                      ..++.+++|+.|||++|+++|.+|.. ..++.+..+++++|.+.|..
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~i  720 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI  720 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEEC
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccC
Confidence            99999999999999999999999976 56788899999999888754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.1e-57  Score=520.10  Aligned_cols=555  Identities=19%  Similarity=0.181  Sum_probs=379.3

Q ss_pred             CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683            2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG   81 (743)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~   81 (743)
                      ++++++ .+|..+.  +++++|+|++|.+.++.+..|.++++|++|+|++|.+++..|. .|+++++|++|+++ ++.++
T Consensus        12 s~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~-~n~l~   86 (680)
T 1ziw_A           12 SHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQ-HNELS   86 (680)
T ss_dssp             CSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECC-SSCCC
T ss_pred             CCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECC-CCccC
Confidence            345555 3454443  5666777777766666666666667777777776666644343 66666677777776 44555


Q ss_pred             cccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcccc
Q 041683           82 GKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSI  161 (743)
Q Consensus        82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  161 (743)
                      +..+.+|+++++|++|++++|.+.+..+..++.++     +|++|++++|.+.+..+..+.++++|++|++++|.+++..
T Consensus        87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK-----NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT-----TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             ccChhhhccCCCCCEEECCCCccCccChhHccccC-----CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence            44444566666777777766666655555555555     6667777766666666666666666777777666666555


Q ss_pred             chhcc--CCCCCCEEEccCCCCccccChhhhcC---------------------------CCCCCEEECCCCcceeecCC
Q 041683          162 PFSLG--QISNLEYLDLSNNKLNGTVSEIHFVN---------------------------LTKLAFFRANGNSLIFKINP  212 (743)
Q Consensus       162 ~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~---------------------------l~~L~~L~l~~n~~~~~~~~  212 (743)
                      +..+.  .+++|++|++++|++++..+. .+..                           .++|+.|++++|.+.+..+.
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~  240 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT  240 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT
T ss_pred             HHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh
Confidence            55443  346666667666666543332 2332                           36788889999998888888


Q ss_pred             CCCCCcc--ccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCC-----C
Q 041683          213 NWVPPFQ--LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIP-----K  285 (743)
Q Consensus       213 ~~~~~~~--L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~  285 (743)
                      .+..+..  |+.|++++|.+.+..+.++..+++|++|++++|.+.+..|..+ ..+++|+.|++++|...+.++     .
T Consensus       241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~  319 (680)
T 1ziw_A          241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPK  319 (680)
T ss_dssp             TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTT-TTCTTCCEEECTTCBCCC------CCE
T ss_pred             HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhh-cCCCCccEEeccchhhhcccccccccc
Confidence            8877754  9999999999988888889999999999999999987555544 568899999999876554322     1


Q ss_pred             CCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCc--ccCCccccCC--CCCCEEECCC
Q 041683          286 FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFS--GDIPDCWMNW--LRLRALNLGH  361 (743)
Q Consensus       286 ~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~--~~~~~~~~~l--~~L~~L~Ls~  361 (743)
                      +....   ......+.  .+++++|.+.+..+..    +..+++|++|++++|.+.  ......|..+  ++|+.|++++
T Consensus       320 i~~~~---~~~l~~L~--~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~  390 (680)
T 1ziw_A          320 IDDFS---FQWLKCLE--HLNMEDNDIPGIKSNM----FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK  390 (680)
T ss_dssp             ECTTT---TTTCTTCC--EEECCSCCBCCCCTTT----TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTT
T ss_pred             cChhh---cccCCCCC--EEECCCCccCCCChhH----hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCC
Confidence            11100   01111222  7888999888765543    445788999999998754  2233344433  5799999999


Q ss_pred             CcCcccCCccccCCCCCcEEEccCccccccCC-cccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCc--
Q 041683          362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIP-TSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH--  438 (743)
Q Consensus       362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~--  438 (743)
                      |++++..|.+|..+++|++|++++|.+.+.++ ..|.++++|++|++++|++.+..+. .+..+++|+.|++++|.+.  
T Consensus       391 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN-SFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-TTTTCTTCCEEECTTSCCBCT
T ss_pred             CCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-hhhcCcccccchhcccccccc
Confidence            99988888888889999999999999876554 6788899999999999988744443 3447889999999998886  


Q ss_pred             ccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccc
Q 041683          439 GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSIL  518 (743)
Q Consensus       439 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  518 (743)
                      +..|..|..+++|+.|++++|++++..+..|..++.|                                           
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-------------------------------------------  506 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-------------------------------------------  506 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------------------------------------
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-------------------------------------------
Confidence            4677888889999999999999987777777776665                                           


Q ss_pred             ccccEEEccCCcCcccCc--------hhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCc
Q 041683          519 NLVRSIDVSKNIFSGEIP--------VEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL  590 (743)
Q Consensus       519 ~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  590 (743)
                         ++|++++|++++..+        ..|.++++|++|+|++|+++...+..|..+++|+.|++++|++++..+..|..+
T Consensus       507 ---~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          507 ---EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             ---CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ---CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence               666777776664321        125666667777777777664333456666777777777777765555556666


Q ss_pred             CCCCeeeCcCCcccccCCCCc--ccCCCCCccccCC
Q 041683          591 SFLNHLNLSNNNLVGKIPSST--QLQSFGASSFAGN  624 (743)
Q Consensus       591 ~~L~~L~ls~N~l~~~~p~~~--~~~~l~~~~~~~n  624 (743)
                      ++|+.|++++|++++..|...  .++.+..+++.||
T Consensus       584 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          584 VSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             TTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             CCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence            677777777776666555432  3455666666666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.8e-56  Score=513.21  Aligned_cols=552  Identities=21%  Similarity=0.192  Sum_probs=464.0

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcC
Q 041683            1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDEL   80 (743)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l   80 (743)
                      |++|.|+++.+.+|.++++|++|+|++|.+.+..|.+|.++++|++|+|++|.++ .+|..+|+++++|++|+++ ++.+
T Consensus        32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~-~n~l  109 (680)
T 1ziw_A           32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLM-SNSI  109 (680)
T ss_dssp             CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECC-SSCC
T ss_pred             CCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECC-CCcc
Confidence            6889999888889999999999999999999999999999999999999999998 6776579999999999999 6678


Q ss_pred             CcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhcc--CCCCCCEEECcCccCc
Q 041683           81 GGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLR--RFKRLNSLDLSNTILD  158 (743)
Q Consensus        81 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~Ls~n~l~  158 (743)
                      .+..|.+|+++++|++|++++|.+++..+..+..++     +|++|++++|.+.+..+..+.  .+++|++|++++|.++
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          110 QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-----NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-----TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CccChhHccccCCCCEEECCCCcccccCchhhcccc-----cCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            877788999999999999999999988777777777     999999999999888887665  5689999999999999


Q ss_pred             cccchhccCC---------------------------CCCCEEEccCCCCccccChhhhcCCCC--CCEEECCCCcceee
Q 041683          159 GSIPFSLGQI---------------------------SNLEYLDLSNNKLNGTVSEIHFVNLTK--LAFFRANGNSLIFK  209 (743)
Q Consensus       159 ~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~~~~~~~~~l~~--L~~L~l~~n~~~~~  209 (743)
                      +..|..|..+                           ++|++|++++|.+.+..+. .+..++.  |++|++++|.+.+.
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCEEECTTSCCCEE
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-HhhccCcCCCCEEECCCCCcCcc
Confidence            8888776644                           5678888888888855554 6777755  99999999999999


Q ss_pred             cCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccc--------cChhhhhhcccCceEecccCcccc
Q 041683          210 INPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAK--------IPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       210 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~--------~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      .+..|..+++|++|++++|.+.+..|.++..+++|+.|++++|...+.        ++...+..+++|++|++++|.+.+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            888999999999999999999988899999999999999998765431        223345678999999999999987


Q ss_pred             CCCC-CCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECC
Q 041683          282 GIPK-FDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLG  360 (743)
Q Consensus       282 ~~~~-~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  360 (743)
                      ..+. +...        ..+.  .+++++|.+...............++|+.|++++|++.+..+..|..+++|++|+++
T Consensus       344 ~~~~~~~~l--------~~L~--~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  413 (680)
T 1ziw_A          344 IKSNMFTGL--------INLK--YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG  413 (680)
T ss_dssp             CCTTTTTTC--------TTCC--EEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CChhHhccc--------cCCc--EEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence            6554 2111        1122  788888876543221110000113589999999999999999999999999999999


Q ss_pred             CCcCcccCC-ccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCc--ccCchhHHhcccCCcEEEccCCcC
Q 041683          361 HNNFTGSLP-MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV--GSIPSWIGERFSILKILNLRSNKF  437 (743)
Q Consensus       361 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~--~~~~~~~~~~l~~L~~L~L~~n~l  437 (743)
                      +|.+.+.+| ..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.  +.+|..+. .+++|++|++++|++
T Consensus       414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l  492 (680)
T 1ziw_A          414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNI  492 (680)
T ss_dssp             SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCC
T ss_pred             CCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCC
Confidence            999987555 68999999999999999999999999999999999999999986  45666664 799999999999999


Q ss_pred             cccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcc
Q 041683          438 HGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSI  517 (743)
Q Consensus       438 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  517 (743)
                      ++..+..|.++++|++|++++|++.+..+..+...+                                      ......
T Consensus       493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--------------------------------------~~~~~~  534 (680)
T 1ziw_A          493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP--------------------------------------IYFLKG  534 (680)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC--------------------------------------CCTTTT
T ss_pred             CcCChhhhccccccCEEeCCCCCccccchhhccCCc--------------------------------------chhhcC
Confidence            988888899999999999999999864332211100                                      001123


Q ss_pred             cccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCcccc-CcCCCCee
Q 041683          518 LNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMS-NLSFLNHL  596 (743)
Q Consensus       518 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L  596 (743)
                      ++.|+.|++++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l  614 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL  614 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred             CCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence            45579999999999966566799999999999999999977777889999999999999999988888777 78999999


Q ss_pred             eCcCCcccccCCC
Q 041683          597 NLSNNNLVGKIPS  609 (743)
Q Consensus       597 ~ls~N~l~~~~p~  609 (743)
                      ++++|++.|.++.
T Consensus       615 ~l~~N~~~c~c~~  627 (680)
T 1ziw_A          615 DMRFNPFDCTCES  627 (680)
T ss_dssp             ECTTCCCCBCCCC
T ss_pred             EccCCCcccCCcc
Confidence            9999999999885

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.9e-56  Score=502.18  Aligned_cols=510  Identities=22%  Similarity=0.217  Sum_probs=413.8

Q ss_pred             CCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683            3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG   82 (743)
Q Consensus         3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~   82 (743)
                      +.+++ .+|..+..  ++++|+|++|.++++.|..|.++++|++|+|++|.+++..|. +|+++++|++|+++ +|.+.+
T Consensus        21 ~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls-~n~l~~   95 (606)
T 3t6q_A           21 NLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLT-ANPLIF   95 (606)
T ss_dssp             TSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECT-TCCCSE
T ss_pred             CCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChh-hccCccccCeeeCC-CCcccc
Confidence            44555 46666654  789999999999999899999999999999999999855555 89999999999999 777888


Q ss_pred             ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccc
Q 041683           83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP  162 (743)
Q Consensus        83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  162 (743)
                      ..|.+|+++++|++|++++|.++...+..+..++     +|++|++++|.+.+.....+..+++|++|++++|.+++..|
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-----TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-----TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             cChhhhcccccccEeeccccCcccCCcchhccCC-----cccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            8899999999999999999999886667777777     99999999999987554456669999999999999998888


Q ss_pred             hhccCCCCCC--EEEccCCCCccccChhhhcCCCCCCEEECCCCcceee--------------------------cCCCC
Q 041683          163 FSLGQISNLE--YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFK--------------------------INPNW  214 (743)
Q Consensus       163 ~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------------~~~~~  214 (743)
                      ..|+.+++|+  +|++++|.+++..+. .+ ...+|++|++++|.....                          .+..+
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~  248 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPG-AF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF  248 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTT-TT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred             hhhhhhcccceeEEecCCCccCccChh-Hh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence            8999999999  899999999865554 44 346899999988751100                          00011


Q ss_pred             CCC--ccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCC
Q 041683          215 VPP--FQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMP  292 (743)
Q Consensus       215 ~~~--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  292 (743)
                      ..+  .+++.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+.+..|        
T Consensus       249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~--------  318 (606)
T 3t6q_A          249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQ--------  318 (606)
T ss_dssp             GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGG--------
T ss_pred             chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCch--------
Confidence            111  15677777777777666666777777777777777775 455543 345667777777766653222        


Q ss_pred             cccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC-ccccCCCCCCEEECCCCcCcccC--C
Q 041683          293 LITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP-DCWMNWLRLRALNLGHNNFTGSL--P  369 (743)
Q Consensus       293 ~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~  369 (743)
                                                   ..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..  +
T Consensus       319 -----------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  369 (606)
T 3t6q_A          319 -----------------------------ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN  369 (606)
T ss_dssp             -----------------------------GCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred             -----------------------------hhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence                                         223347889999999999885554 45889999999999999998665  7


Q ss_pred             ccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCC
Q 041683          370 MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLA  449 (743)
Q Consensus       370 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  449 (743)
                      ..+..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+...+..+++|++|++++|.+.+..|..+..++
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  449 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP  449 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCT
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCC
Confidence            78889999999999999999888899999999999999999998666655455789999999999999988888899999


Q ss_pred             CccEEEccCCcccccc---CccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEc
Q 041683          450 FLQILDVASNSLSGTI---PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDV  526 (743)
Q Consensus       450 ~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  526 (743)
                      +|++|++++|++.+..   +..+..++                                              .|++|++
T Consensus       450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~----------------------------------------------~L~~L~L  483 (606)
T 3t6q_A          450 ALQHLNLQGNHFPKGNIQKTNSLQTLG----------------------------------------------RLEILVL  483 (606)
T ss_dssp             TCCEEECTTCBCGGGEECSSCGGGGCT----------------------------------------------TCCEEEC
T ss_pred             CCCEEECCCCCCCccccccchhhccCC----------------------------------------------CccEEEC
Confidence            9999999999987632   23344444                                              4699999


Q ss_pred             cCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccccc
Q 041683          527 SKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGK  606 (743)
Q Consensus       527 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  606 (743)
                      ++|++++..|..|.++++|++|+|++|++++..|+.+..+++| .|++++|++++..|..+..+++|+.|++++|+++|.
T Consensus       484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            9999999889999999999999999999999999999999999 999999999988888899999999999999999998


Q ss_pred             CCCC
Q 041683          607 IPSS  610 (743)
Q Consensus       607 ~p~~  610 (743)
                      ++..
T Consensus       563 c~~~  566 (606)
T 3t6q_A          563 CSNI  566 (606)
T ss_dssp             GGGH
T ss_pred             CCcH
Confidence            7754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-55  Score=515.54  Aligned_cols=546  Identities=21%  Similarity=0.219  Sum_probs=376.4

Q ss_pred             CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683            2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG   81 (743)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~   81 (743)
                      ++++++. +|.   -.++|++|||++|.|+++.+..|.++++|++|+|++|...+.++..+|+++++|++|+|+ +|.+.
T Consensus        12 s~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls-~N~l~   86 (844)
T 3j0a_A           12 RFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG-SSKIY   86 (844)
T ss_dssp             SCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT-TCCCC
T ss_pred             cCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC-CCcCc
Confidence            5677774 554   457899999999999999899999999999999999977667755589999999999999 77888


Q ss_pred             cccchhccCCCCCCEEEccCCcCcccchhh--hhcccccccCCccEEEccCCcCcccch-hhccCCCCCCEEECcCccCc
Q 041683           82 GKIPTSFGKLCKLTSFSMRFTKLSQDISEI--LGIFSACVANELESLRLGSSQIFGHLT-NQLRRFKRLNSLDLSNTILD  158 (743)
Q Consensus        82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~  158 (743)
                      +..|.+|.++++|++|++++|.+++..+..  +..++     +|++|++++|.+.+..+ ..|+++++|++|++++|.++
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-----~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK-----ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS-----SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             ccCHhHccCCcccCEeeCcCCCCCcccccCccccccC-----CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            888999999999999999999998766554  67777     99999999999987655 57999999999999999999


Q ss_pred             cccchhccCC--CCCCEEEccCCCCccccChhhhcCCCC------CCEEECCCCcceeecCCCCCC---CccccEEEcCC
Q 041683          159 GSIPFSLGQI--SNLEYLDLSNNKLNGTVSEIHFVNLTK------LAFFRANGNSLIFKINPNWVP---PFQLTVLELRS  227 (743)
Q Consensus       159 ~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~~------L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~l~~  227 (743)
                      +..+..+..+  ++|++|++++|.+.+..+. .+..+++      |++|++++|.+....+..+..   ..+++.+.++.
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~  240 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH  240 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred             eeCHHHcccccCCccceEECCCCcccccccc-chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence            8888888877  8999999999999876655 4555544      999999999877665554433   24566776653


Q ss_pred             Cc---------CCCCcchhhcCC--CCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCC-CCCCCCCccc
Q 041683          228 CH---------LGPRFPLWLQSQ--RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPK-FDNPSMPLIT  295 (743)
Q Consensus       228 n~---------l~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~~~~  295 (743)
                      +.         +.......+..+  ++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|. +...      
T Consensus       241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l------  313 (844)
T 3j0a_A          241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGL------  313 (844)
T ss_dssp             SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTC------
T ss_pred             ccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCC------
Confidence            32         222233334443  578888888887765433 3345577788888888777654432 1100      


Q ss_pred             CCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCC
Q 041683          296 TPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTL  375 (743)
Q Consensus       296 ~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  375 (743)
                        ..+.  .+++++|.+.+..+.    .+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++.     ..+
T Consensus       314 --~~L~--~L~Ls~N~l~~~~~~----~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~  380 (844)
T 3j0a_A          314 --DNLQ--VLNLSYNLLGELYSS----NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFI  380 (844)
T ss_dssp             --SSCC--EEEEESCCCSCCCSC----SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSC
T ss_pred             --CCCC--EEECCCCCCCccCHH----HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCC
Confidence              0011  445555544433322    233456666666666666665556666666666666666666532     225


Q ss_pred             CCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCc-cccCCCCccEE
Q 041683          376 SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI-QLCGLAFLQIL  454 (743)
Q Consensus       376 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L  454 (743)
                      ++|+.|++++|.++.. |..   ..+++.|++++|.+.+.-.......+++|++|++++|++.+..+. .+..+++|+.|
T Consensus       381 ~~L~~L~l~~N~l~~l-~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L  456 (844)
T 3j0a_A          381 PSIPDIFLSGNKLVTL-PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL  456 (844)
T ss_dssp             CSCSEEEEESCCCCCC-CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBC
T ss_pred             CCcchhccCCCCcccc-ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccc
Confidence            6666666666666632 221   345666677777665322222223566677777777766643322 34456667777


Q ss_pred             EccCCcccccc-----CccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCC
Q 041683          455 DVASNSLSGTI-----PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKN  529 (743)
Q Consensus       455 ~Ls~N~l~~~~-----p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  529 (743)
                      ++++|.+.+..     +..|..                                              ++.|+.|+|++|
T Consensus       457 ~Ls~N~l~~~~~~~~~~~~~~~----------------------------------------------l~~L~~L~Ls~N  490 (844)
T 3j0a_A          457 FLGENMLQLAWETELCWDVFEG----------------------------------------------LSHLQVLYLNHN  490 (844)
T ss_dssp             EEESCCCSSSCCSCCCSSCSSC----------------------------------------------BCCEECCCCCHH
T ss_pred             cCCCCccccccccccchhhhcC----------------------------------------------cccccEEECCCC
Confidence            77777665222     222222                                              344688888888


Q ss_pred             cCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683          530 IFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       530 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  609 (743)
                      ++++..|..|.++++|++|+|++|++++..|..+.  ++|+.|++++|++++..|..+   .+|+.+++++|++.|.++-
T Consensus       491 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             cccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            88888888888888888888888888876666665  788888888888888888765   4788888888888888774


Q ss_pred             CcccCCCCCccccCC-CCCCCCCC-CCCCC
Q 041683          610 STQLQSFGASSFAGN-DLCGDPLS-NCTEK  637 (743)
Q Consensus       610 ~~~~~~l~~~~~~~n-~l~~~~~~-~c~~~  637 (743)
                      ......+    ..++ .++|.+.. .|..+
T Consensus       566 ~~f~~~~----~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          566 STFINWL----NHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             CSHHHHH----HHTTTTTCCCGGGCCCSSC
T ss_pred             HHHHHHH----HhcCcccccccccCccCCc
Confidence            3221111    1233 55665544 57543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.4e-54  Score=490.51  Aligned_cols=527  Identities=20%  Similarity=0.180  Sum_probs=390.0

Q ss_pred             CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683            2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG   81 (743)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~   81 (743)
                      ++++++ .+|..+.  ++|++|+|++|.++++.+..|.++++|++|+|++|.+++..|. +|.++++|++|+++ ++.++
T Consensus        19 ~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls-~n~l~   93 (606)
T 3vq2_A           19 MDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILT-GNPIQ   93 (606)
T ss_dssp             TTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECT-TCCCC
T ss_pred             cCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHH-HhhchhhcCEeECC-CCccc
Confidence            456666 4555554  6788888888888888777888888888888888888744444 78888888888888 66677


Q ss_pred             cccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCccc
Q 041683           82 GKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGS  160 (743)
Q Consensus        82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~  160 (743)
                      +..|.+|+++++|++|++++|.+....+..++.+.     +|++|++++|.+.+ .+|..+.++++|++|++++|.+++.
T Consensus        94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-----TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT-----TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             ccChhhcCCcccCCEEEccCCccccccccccCCCC-----CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            77788888888888888888888776656677666     88888888888865 5577888888888888888888877


Q ss_pred             cchhccCCCCCC----EEEccCCCCccccChhhhcCCCCCCEEECCCCcce-eecCCCCCCCccccEEEcCCCcCCC---
Q 041683          161 IPFSLGQISNLE----YLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLI-FKINPNWVPPFQLTVLELRSCHLGP---  232 (743)
Q Consensus       161 ~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~---  232 (743)
                      .|..|+.+++|+    +|++++|.++ .++...+... +|++|++++|.+. ...+..+..+..++.+++..+.+..   
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            777676655544    7888888887 4554345444 7888888888765 2233344555556665554332211   


Q ss_pred             ---CcchhhcCCC--CCCEEEc-cCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEE
Q 041683          233 ---RFPLWLQSQR--ELNDLDI-SSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFD  306 (743)
Q Consensus       233 ---~~~~~l~~l~--~L~~L~l-~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~  306 (743)
                         ..+..+..+.  .++.+++ ..+.+.+.+|.  +..+++|+.|++++|.+.. +|.+...        ..+.  .++
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~~l~~~--------~~L~--~L~  313 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LEDVPKH--------FKWQ--SLS  313 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CCCCCTT--------CCCS--EEE
T ss_pred             ccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchh-hhhcccc--------ccCC--EEE
Confidence               1111222211  2444555 55566655554  4556777777777777642 3322111        1111  566


Q ss_pred             ecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCccc--CCccccCCCCCcEEEcc
Q 041683          307 LSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS--LPMSIGTLSSLLSLNLR  384 (743)
Q Consensus       307 ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~  384 (743)
                      +++|.+ +.+|.     + .+++|++|++++|...+..  .+..+++|++|++++|.+++.  .+..+..+++|++|+++
T Consensus       314 l~~n~l-~~lp~-----~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~  384 (606)
T 3vq2_A          314 IIRCQL-KQFPT-----L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS  384 (606)
T ss_dssp             EESCCC-SSCCC-----C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECC
T ss_pred             cccccC-ccccc-----C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECC
Confidence            777766 44442     1 4788999999999655433  567888999999999998865  37778889999999999


Q ss_pred             CccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc-
Q 041683          385 NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG-  463 (743)
Q Consensus       385 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-  463 (743)
                      +|.+++ .|..+..+++|++|++++|++.+..|...+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ 
T Consensus       385 ~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  463 (606)
T 3vq2_A          385 FNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN  463 (606)
T ss_dssp             SCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence            999885 447888899999999999998866563444478899999999999988888889999999999999999887 


Q ss_pred             ccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccC
Q 041683          464 TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ  543 (743)
Q Consensus       464 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  543 (743)
                      .+|..+..++.                                              |++|++++|++++..|..|.+++
T Consensus       464 ~~~~~~~~l~~----------------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          464 TLSNVFANTTN----------------------------------------------LTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             EECSCCTTCTT----------------------------------------------CCEEECTTSCCCEECTTTTTTCT
T ss_pred             chHHhhccCCC----------------------------------------------CCEEECCCCcCCccChhhhcccc
Confidence            36777766665                                              48899999999988888899999


Q ss_pred             CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcC-CCCeeeCcCCcccccCCCC
Q 041683          544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLS-FLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~  610 (743)
                      +|++|+|++|++++.+|..|..+++|++|++++|+++ .+|..+..++ +|++|++++|++.|.++..
T Consensus       498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            9999999999999888899999999999999999998 5666688886 5999999999999888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6e-53  Score=478.96  Aligned_cols=490  Identities=19%  Similarity=0.177  Sum_probs=424.1

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcC
Q 041683            1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDEL   80 (743)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l   80 (743)
                      |++|.|+++.|.+|.++++|++|+|++|++.++.|.+|.++++|++|+|++|.+++..|. .|+++++|++|+++ ++.+
T Consensus        40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~-~n~i  117 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFI-QTGI  117 (606)
T ss_dssp             CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECT-TSCC
T ss_pred             ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeecc-ccCc
Confidence            689999999999999999999999999999999999999999999999999999965566 89999999999999 7788


Q ss_pred             CcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCC--EEECcCccCc
Q 041683           81 GGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLN--SLDLSNTILD  158 (743)
Q Consensus        81 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~--~L~Ls~n~l~  158 (743)
                      ++..+..+.++++|++|++++|.+.+.....+..++     +|++|++++|.+.+..+..+..+++|+  +|++++|.++
T Consensus       118 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE-----KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCT-----TCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             ccCCcchhccCCcccEEECCCCcccccCcccccCCc-----ccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            877788899999999999999999874323333355     999999999999999899999999999  9999999999


Q ss_pred             cccchhccCCCCCCEEEccCCCCc-------------------------cccChhhhcCCC--CCCEEECCCCcceeecC
Q 041683          159 GSIPFSLGQISNLEYLDLSNNKLN-------------------------GTVSEIHFVNLT--KLAFFRANGNSLIFKIN  211 (743)
Q Consensus       159 ~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~  211 (743)
                      +..|..|.. .+|++|++++|...                         ..++...+..+.  +|+.|++++|.+....+
T Consensus       193 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          193 GIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             EECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             ccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence            877776654 68999999887511                         012222333333  78999999999998888


Q ss_pred             CCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCC
Q 041683          212 PNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSM  291 (743)
Q Consensus       212 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  291 (743)
                      ..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+.+|.      
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~------  343 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGT------  343 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCS------
T ss_pred             HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccch------
Confidence            88999999999999999998 67888999999999999999998654544 45689999999999988755442      


Q ss_pred             CcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccC--CccccCCCCCCEEECCCCcCcccCC
Q 041683          292 PLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDI--PDCWMNWLRLRALNLGHNNFTGSLP  369 (743)
Q Consensus       292 ~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~  369 (743)
                                                    ..+..+++|++|++++|.+.+..  +..+..+++|++|++++|++.+..|
T Consensus       344 ------------------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  393 (606)
T 3t6q_A          344 ------------------------------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT  393 (606)
T ss_dssp             ------------------------------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred             ------------------------------hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence                                          12344789999999999999765  7789999999999999999998889


Q ss_pred             ccccCCCCCcEEEccCccccccCCc-ccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCccc---CCccc
Q 041683          370 MSIGTLSSLLSLNLRNNILSGIIPT-SFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGD---FPIQL  445 (743)
Q Consensus       370 ~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~  445 (743)
                      ..|..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++.+.   .+..+
T Consensus       394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~  472 (606)
T 3t6q_A          394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSL  472 (606)
T ss_dssp             TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGG
T ss_pred             HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhh
Confidence            9999999999999999999877654 489999999999999999866665554 799999999999999863   33568


Q ss_pred             cCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEE
Q 041683          446 CGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSID  525 (743)
Q Consensus       446 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  525 (743)
                      ..+++|+.|++++|++.+..|..|..++.|                                              ++|+
T Consensus       473 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------------------------------~~L~  506 (606)
T 3t6q_A          473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMM----------------------------------------------NHVD  506 (606)
T ss_dssp             GGCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------------------------------CEEE
T ss_pred             ccCCCccEEECCCCccCccChhhhccccCC----------------------------------------------CEEE
Confidence            999999999999999998888888777664                                              9999


Q ss_pred             ccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCC
Q 041683          526 VSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP  584 (743)
Q Consensus       526 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  584 (743)
                      +++|++++..|..+.+++.| .|++++|++++.+|+.+..+++|+.|++++|++++..+
T Consensus       507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999 99999999998888889999999999999999986544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.8e-52  Score=472.36  Aligned_cols=525  Identities=16%  Similarity=0.138  Sum_probs=415.7

Q ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEc
Q 041683           20 LKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSM   99 (743)
Q Consensus        20 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L   99 (743)
                      -++++.++++++.+.. .+.  ++|++|+|++|.+++ ++...|.++++|++|+++ ++.+++..|.+|.++++|++|++
T Consensus        13 ~~~~~c~~~~l~~ip~-~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~L   87 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPD-DIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLIL   87 (606)
T ss_dssp             TTEEECTTSCCSSCCT-TSC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCceEccCCCcccCCC-CCC--CCcCEEECCCCCcCE-eChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeEC
Confidence            4689999999966544 343  789999999999995 444489999999999999 67888888999999999999999


Q ss_pred             cCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcc-ccchhccCCCCCCEEEccC
Q 041683          100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG-SIPFSLGQISNLEYLDLSN  178 (743)
Q Consensus       100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~  178 (743)
                      ++|.+++..|..++.+.     +|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..|+++++|++|++++
T Consensus        88 s~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           88 TGNPIQSFSPGSFSGLT-----SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             TTCCCCCCCTTSSTTCT-----TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             CCCcccccChhhcCCcc-----cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            99999998898898888     99999999999988888889999999999999999986 4689999999999999999


Q ss_pred             CCCccccChhhhcCCCCCC----EEECCCCcceeecCCCCCCCccccEEEcCCCcCC-CCcchhhcCCCCCCEEEccCCC
Q 041683          179 NKLNGTVSEIHFVNLTKLA----FFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG-PRFPLWLQSQRELNDLDISSTR  253 (743)
Q Consensus       179 n~l~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~  253 (743)
                      |++++..+. .+..+.+|+    +|++++|.+....+..+... +|+.|++++|.+. ...|.++..++.++.+++..+.
T Consensus       163 n~l~~~~~~-~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~  240 (606)
T 3vq2_A          163 NYIQTITVN-DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE  240 (606)
T ss_dssp             SCCCEECTT-TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             CcceecChh-hhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence            999854444 566666554    89999999987776666555 8999999999886 4678889999999998886554


Q ss_pred             Ccc-----ccChhhhhhcc--cCceEec-ccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCC
Q 041683          254 ISA-----KIPRGFWNSIY--QYFYLNI-SGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGEN  325 (743)
Q Consensus       254 i~~-----~~~~~~~~~l~--~L~~L~l-~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~  325 (743)
                      +..     .++...+..+.  .++.+++ ..+.+.+.+|.+...        ..+.  .++++++.+... +     .+.
T Consensus       241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l--------~~L~--~L~l~~~~~~~l-~-----~l~  304 (606)
T 3vq2_A          241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL--------ANVS--AMSLAGVSIKYL-E-----DVP  304 (606)
T ss_dssp             CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG--------TTCS--EEEEESCCCCCC-C-----CCC
T ss_pred             cccCCcccccChHHhhhhhhccHhheeccccccccccccccccC--------CCCC--EEEecCccchhh-h-----hcc
Confidence            432     12222222222  3455666 556666655542111        1111  677777776432 2     345


Q ss_pred             CCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCcccccc--CCcccCCCCCCC
Q 041683          326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGI--IPTSFKNFSSLE  403 (743)
Q Consensus       326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~  403 (743)
                      .+++|++|++++|.+ +.+| .+ .+++|++|++++|+..+..  .+..+++|++|++++|.+++.  .+..+..+++|+
T Consensus       305 ~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~  379 (606)
T 3vq2_A          305 KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLR  379 (606)
T ss_dssp             TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCC
T ss_pred             ccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCccc
Confidence            577888888888888 4566 34 7888888888888655433  566788888888888888765  367778888888


Q ss_pred             EEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683          404 VLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD  482 (743)
Q Consensus       404 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  482 (743)
                      +|++++|.+. .+|..+. .+++|++|++++|++.+..+ ..+..+++|++|++++|++.+..|..+..++.        
T Consensus       380 ~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--------  449 (606)
T 3vq2_A          380 HLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS--------  449 (606)
T ss_dssp             EEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT--------
T ss_pred             EeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC--------
Confidence            8888888876 4554443 67888888888888887666 57788888888888888888777777666555        


Q ss_pred             hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcc-cCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683          483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG-EIPVEVTNLQGLQSLNLSHNLLTGRIPD  561 (743)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  561 (743)
                                                            |++|++++|++++ .+|..+..+++|++|+|++|++++..|.
T Consensus       450 --------------------------------------L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  491 (606)
T 3vq2_A          450 --------------------------------------LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG  491 (606)
T ss_dssp             --------------------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             --------------------------------------CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence                                                  5999999999998 4788899999999999999999999999


Q ss_pred             CCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC-cccC-CCCCccccCCCC
Q 041683          562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS-TQLQ-SFGASSFAGNDL  626 (743)
Q Consensus       562 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~l~~~~~~~n~l  626 (743)
                      .|..+++|++|++++|++++..|..+..+++|++||+++|+++. +|.. ..+. .++.+++.+|++
T Consensus       492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCC
T ss_pred             hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCc
Confidence            99999999999999999999999999999999999999999994 5543 4444 478888888844

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-51  Score=482.44  Aligned_cols=526  Identities=19%  Similarity=0.198  Sum_probs=418.7

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR  100 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~  100 (743)
                      +..|.++++++.++.    -.++|++|+|++|.+++..+. .|.++++|++|+|++|.......|.+|.++++|++|+++
T Consensus         7 ~~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             EEEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred             eEEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence            478889999976543    458999999999999955555 899999999999995544444448899999999999999


Q ss_pred             CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhh--ccCCCCCCEEECcCccCccccc-hhccCCCCCCEEEcc
Q 041683          101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQ--LRRFKRLNSLDLSNTILDGSIP-FSLGQISNLEYLDLS  177 (743)
Q Consensus       101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~  177 (743)
                      +|.+.+..|..++.+.     +|++|+|++|.+.+..+..  |.++++|++|+|++|.+++..+ ..|+++++|++|+++
T Consensus        82 ~N~l~~~~p~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLF-----HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             TCCCCEECTTSSCSCS-----SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             CCcCcccCHhHccCCc-----ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            9999998899999888     9999999999998866654  9999999999999999987655 579999999999999


Q ss_pred             CCCCccccChhhhcCC--CCCCEEECCCCcceeecCCCCCCCcc------ccEEEcCCCcCCCCcchhhcCC---CCCCE
Q 041683          178 NNKLNGTVSEIHFVNL--TKLAFFRANGNSLIFKINPNWVPPFQ------LTVLELRSCHLGPRFPLWLQSQ---RELND  246 (743)
Q Consensus       178 ~n~l~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~~~~------L~~L~l~~n~l~~~~~~~l~~l---~~L~~  246 (743)
                      +|.+++..+. .+..+  ++|+.|++++|.+.+..+..+..+.+      |+.|++++|.+.+..+..+...   .+++.
T Consensus       157 ~N~i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          157 SNQIFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             SSCCCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred             CCcCCeeCHH-HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence            9999865555 67766  89999999999999888777766655      9999999999887777666543   67888


Q ss_pred             EEccCCCC---------ccccChhhhhh--cccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccc
Q 041683          247 LDISSTRI---------SAKIPRGFWNS--IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGS  315 (743)
Q Consensus       247 L~l~~n~i---------~~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~  315 (743)
                      +.++.+..         .+.... .+..  .++|+.|++++|.+.+..|.....       ...+.  .+++++|.+.+.
T Consensus       236 L~l~~~~~~~~~~~~~l~~~~~~-~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-------l~~L~--~L~L~~n~i~~~  305 (844)
T 3j0a_A          236 LILAHHIMGAGFGFHNIKDPDQN-TFAGLARSSVRHLDLSHGFVFSLNSRVFET-------LKDLK--VLNLAYNKINKI  305 (844)
T ss_dssp             EECCSSCCBCSSSCSSSTTGGGT-TTTTTTTSCCCEEECTTCCCCEECSCCSSS-------CCCCC--EEEEESCCCCEE
T ss_pred             eecccccccccccccccCCCChh-hhhccccCCccEEECCCCcccccChhhhhc-------CCCCC--EEECCCCcCCCC
Confidence            98874433         221112 2222  368999999999988655432110       01112  788888888776


Q ss_pred             cchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcc
Q 041683          316 IFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTS  395 (743)
Q Consensus       316 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~  395 (743)
                      .+..    +..+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+..|..+++|++|++++|.++++.   
T Consensus       306 ~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~---  378 (844)
T 3j0a_A          306 ADEA----FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH---  378 (844)
T ss_dssp             CTTT----TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS---
T ss_pred             ChHH----hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc---
Confidence            5543    345788888888888888777888888888888888888888777778888888888888888887432   


Q ss_pred             cCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccccCc-cccccc
Q 041683          396 FKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPR-CINNLS  473 (743)
Q Consensus       396 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~  473 (743)
                        .+++|+.|++++|++. .+|..    ..+++.|++++|++.+... ..+..+++|+.|++++|++.+..+. .+..  
T Consensus       379 --~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~--  449 (844)
T 3j0a_A          379 --FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE--  449 (844)
T ss_dssp             --SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS--
T ss_pred             --CCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc--
Confidence              3778888888888887 66643    4578888999888885432 2356788899999999988754432 1222  


Q ss_pred             cccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCc-----ccCchhhcccCCCCEE
Q 041683          474 AMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS-----GEIPVEVTNLQGLQSL  548 (743)
Q Consensus       474 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L  548 (743)
                                                                  ++.|+.|++++|.++     +..+..|.++++|++|
T Consensus       450 --------------------------------------------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L  485 (844)
T 3j0a_A          450 --------------------------------------------NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL  485 (844)
T ss_dssp             --------------------------------------------CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECC
T ss_pred             --------------------------------------------CCccccccCCCCccccccccccchhhhcCcccccEE
Confidence                                                        344799999999997     4455678999999999


Q ss_pred             eCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCC
Q 041683          549 NLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLC  627 (743)
Q Consensus       549 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~  627 (743)
                      +|++|++++.+|..|..+++|+.|+|++|++++..|..+.  ++|+.||+++|++++.+|..  +..+..+++.|| -.|
T Consensus       486 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFIC  561 (844)
T ss_dssp             CCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCC
T ss_pred             ECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccc
Confidence            9999999999999999999999999999999988777766  89999999999999999975  567888899999 557


Q ss_pred             CCCC
Q 041683          628 GDPL  631 (743)
Q Consensus       628 ~~~~  631 (743)
                      ..+.
T Consensus       562 ~c~~  565 (844)
T 3j0a_A          562 ECEL  565 (844)
T ss_dssp             SSSC
T ss_pred             cccc
Confidence            6553

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-49  Score=446.27  Aligned_cols=506  Identities=21%  Similarity=0.190  Sum_probs=386.7

Q ss_pred             CCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683            3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG   82 (743)
Q Consensus         3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~   82 (743)
                      +.+++ .+|..+.  +++++|+|++|+++++.+.+|.++++|++|+|++|.++ .++...|+++++|++|+++ ++.+++
T Consensus        16 ~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~-~n~l~~   90 (570)
T 2z63_A           16 ELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-GNPIQS   90 (570)
T ss_dssp             SSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECT-TCCCCE
T ss_pred             CCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCc-CCcCCc
Confidence            34455 4565543  57999999999999888889999999999999999998 4554489999999999999 667877


Q ss_pred             ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCcccc
Q 041683           83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGSI  161 (743)
Q Consensus        83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~  161 (743)
                      ..|.+|.++++|++|++++|.+....+..++.+.     +|++|++++|.+.+ .+|..|.++++|++|++++|.+++..
T Consensus        91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~-----~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A           91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred             cCHhhhcCccccccccccccccccCCCccccccc-----cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence            7788999999999999999998775544566666     89999999999876 46888999999999999999998877


Q ss_pred             chhccCCCCC----CEEEccCCCCccccChhhhcCCCCCCEEECCCCccee-ecCCCCCCCccccEEEcCCCcC------
Q 041683          162 PFSLGQISNL----EYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIF-KINPNWVPPFQLTVLELRSCHL------  230 (743)
Q Consensus       162 ~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l------  230 (743)
                      +..++.+++|    ++|++++|.+.+..+. .+... +|++|++++|.... ..+..+..+..++.+.+....+      
T Consensus       166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  243 (570)
T 2z63_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  243 (570)
T ss_dssp             GGGGHHHHTCTTCCCEEECTTCCCCEECTT-TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred             HHHccchhccchhhhhcccCCCCceecCHH-HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence            8888888888    8999999999844443 56555 79999988874321 0111122333344333322111      


Q ss_pred             CCCcchhhcCCC--CCCEEEccCC-CCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEe
Q 041683          231 GPRFPLWLQSQR--ELNDLDISST-RISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL  307 (743)
Q Consensus       231 ~~~~~~~l~~l~--~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~l  307 (743)
                      .......+..+.  .++.++++++ .+.+..+.. +..+++|+.|++++|.+.+ +|.                      
T Consensus       244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~l~~-l~~----------------------  299 (570)
T 2z63_A          244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVTIER-VKD----------------------  299 (570)
T ss_dssp             EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCEECS-CCB----------------------
T ss_pred             hhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCccchh-hhh----------------------
Confidence            111112222222  3566777776 555444444 4557888888888887752 221                      


Q ss_pred             cCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCcc
Q 041683          308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI  387 (743)
Q Consensus       308 s~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  387 (743)
                                     .+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..+.  ..+++|++|++++|.
T Consensus       300 ---------------~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          300 ---------------FSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG  358 (570)
T ss_dssp             ---------------CCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred             ---------------hhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence                           12224 6888888888887 4443  4678888888888888765544  678888999999888


Q ss_pred             ccccC--CcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccc
Q 041683          388 LSGII--PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGT  464 (743)
Q Consensus       388 i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~  464 (743)
                      +++..  +..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  436 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  436 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC
T ss_pred             cCccccccccccccCccCEEECCCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc
Confidence            87654  567788889999999999887 44544 3468889999999998886655 4688889999999999998887


Q ss_pred             cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCc-ccCchhhcccC
Q 041683          465 IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFS-GEIPVEVTNLQ  543 (743)
Q Consensus       465 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~  543 (743)
                      .|..+..++.                                              |++|++++|.++ +.+|..+..++
T Consensus       437 ~~~~~~~l~~----------------------------------------------L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          437 FNGIFNGLSS----------------------------------------------LEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             CTTTTTTCTT----------------------------------------------CCEEECTTCEEGGGEECSCCTTCT
T ss_pred             chhhhhcCCc----------------------------------------------CcEEECcCCcCccccchhhhhccc
Confidence            7777776665                                              488999999987 57888899999


Q ss_pred             CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCccc
Q 041683          544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQL  613 (743)
Q Consensus       544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~  613 (743)
                      +|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|....+
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~  540 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL  540 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence            9999999999999888999999999999999999999988888999999999999999999999986443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.1e-48  Score=436.27  Aligned_cols=488  Identities=20%  Similarity=0.249  Sum_probs=373.4

Q ss_pred             CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683            2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG   81 (743)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~   81 (743)
                      ++|+++ .+|..+.  ++|++|+|++|+++++.+..|.++++|++|+|++|.+++..+. +|.++++|++|+++ ++.+.
T Consensus        13 ~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls-~n~l~   87 (549)
T 2z81_A           13 RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGSLEHLDLS-DNHLS   87 (549)
T ss_dssp             TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECT-TSCCC
T ss_pred             CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh-hccccccCCEEECC-CCccC
Confidence            467777 4565554  7899999999999888888899999999999999999854444 78899999999999 66788


Q ss_pred             cccchhccCCCCCCEEEccCCcCcc-cchhhhhcccccccCCccEEEccCCcCcccc-hhhccCCCCCCEEECcCccCcc
Q 041683           82 GKIPTSFGKLCKLTSFSMRFTKLSQ-DISEILGIFSACVANELESLRLGSSQIFGHL-TNQLRRFKRLNSLDLSNTILDG  159 (743)
Q Consensus        82 ~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~  159 (743)
                      +..|.+|+++++|++|++++|.+++ ..+..++.++     +|++|++++|.+.+.+ +..|.++++|++|++++|.+++
T Consensus        88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-----~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-----NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-----TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             ccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-----CccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            7777789999999999999998876 3456666666     8899999888844444 4678888899999999998888


Q ss_pred             ccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhc
Q 041683          160 SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ  239 (743)
Q Consensus       160 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  239 (743)
                      ..|..++.+++|++|++++|.+. .++...+..+++|++|++++|.+.+....                     ......
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~  220 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDE  220 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCC
T ss_pred             cChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc---------------------ccchhh
Confidence            88888888888999999888876 55554556788888888888776542100                     011123


Q ss_pred             CCCCCCEEEccCCCCccccChhhh---hhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCcccccc
Q 041683          240 SQRELNDLDISSTRISAKIPRGFW---NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSI  316 (743)
Q Consensus       240 ~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~  316 (743)
                      .+++|+.|++++|.+++..+..+.   ..+++|+.+++++|.+.+.. .+...                           
T Consensus       221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~---------------------------  272 (549)
T 2z81_A          221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG-DFNPS---------------------------  272 (549)
T ss_dssp             CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS-CCCCC---------------------------
T ss_pred             hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc-ccccc---------------------------
Confidence            456677777777777654443332   33567777888877765421 11000                           


Q ss_pred             chhhccCCCCCCCccEEECcCCcCccc-----CCccccCCCCCCEEECCCCcCcccCCccc-cCCCCCcEEEccCccccc
Q 041683          317 FHLICQGENFSNNIEFLKLSKNNFSGD-----IPDCWMNWLRLRALNLGHNNFTGSLPMSI-GTLSSLLSLNLRNNILSG  390 (743)
Q Consensus       317 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~  390 (743)
                         ....+..+++++.|++.++.+...     .+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++
T Consensus       273 ---~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~  348 (549)
T 2z81_A          273 ---ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE  348 (549)
T ss_dssp             ---TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH
T ss_pred             ---chhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc
Confidence               001223356788888888876532     1222344578999999999998 566555 579999999999999987


Q ss_pred             cCC---cccCCCCCCCEEeCCCCcCcccCch--hHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccccc
Q 041683          391 IIP---TSFKNFSSLEVLDLGENELVGSIPS--WIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI  465 (743)
Q Consensus       391 ~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  465 (743)
                      ..|   ..+..+++|++|++++|+++ .++.  ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+ +
T Consensus       349 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l  425 (549)
T 2z81_A          349 EYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-V  425 (549)
T ss_dssp             HHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-C
T ss_pred             ccccchhhhhccccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-c
Confidence            654   34788999999999999997 4443  34557999999999999999 678888999999999999999873 3


Q ss_pred             CccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCC
Q 041683          466 PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGL  545 (743)
Q Consensus       466 p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  545 (743)
                      |..+                                                .+.|++||+++|++++.+    ..+++|
T Consensus       426 ~~~~------------------------------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L  453 (549)
T 2z81_A          426 KTCI------------------------------------------------PQTLEVLDVSNNNLDSFS----LFLPRL  453 (549)
T ss_dssp             CTTS------------------------------------------------CTTCSEEECCSSCCSCCC----CCCTTC
T ss_pred             cchh------------------------------------------------cCCceEEECCCCChhhhc----ccCChh
Confidence            3221                                                123799999999999753    578999


Q ss_pred             CEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          546 QSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       546 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                      ++|+|++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+.|++++|+++|.+|..
T Consensus       454 ~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          454 QELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             CEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             cEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            99999999999 7776 567999999999999999999989999999999999999999998853

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-47  Score=431.72  Aligned_cols=485  Identities=20%  Similarity=0.200  Sum_probs=408.1

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcC
Q 041683            1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDEL   80 (743)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l   80 (743)
                      |++|.++++.+.+|.++++|++|+|++|++.++.+..|.++++|++|+|++|.++ .++...|.++++|++|+++ ++.+
T Consensus        35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~-~n~l  112 (570)
T 2z63_A           35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAV-ETNL  112 (570)
T ss_dssp             CCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT-TSCC
T ss_pred             ccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccccc-cccc
Confidence            6889999988999999999999999999999998999999999999999999998 4554489999999999999 6677


Q ss_pred             CcccchhccCCCCCCEEEccCCcCcc-cchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCC----CEEECcCc
Q 041683           81 GGKIPTSFGKLCKLTSFSMRFTKLSQ-DISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRL----NSLDLSNT  155 (743)
Q Consensus        81 ~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~Ls~n  155 (743)
                      .+..+..++++++|++|++++|.+.. .+|..++.++     +|++|++++|.+.+..+..+..+++|    ++|++++|
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             ccCCCccccccccccEEecCCCccceecChhhhcccC-----CCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            76666679999999999999999987 4688888888     99999999999998888888888888    89999999


Q ss_pred             cCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCc------ceeecCCCCCCCc--cccEEEcCC
Q 041683          156 ILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS------LIFKINPNWVPPF--QLTVLELRS  227 (743)
Q Consensus       156 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~------~~~~~~~~~~~~~--~L~~L~l~~  227 (743)
                      .+++..|..|..+ +|++|++++|..........+..++.++...+....      +.......+..+.  .++.+++++
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            9998888888766 899999999865432222357778877776654322      2222223333333  466777877


Q ss_pred             C-cCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEE
Q 041683          228 C-HLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFD  306 (743)
Q Consensus       228 n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~  306 (743)
                      + .+.+..+..+..+++|++|++++|.+. .+|..+.. + +|+.|++++|.+. .+|.                     
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~---------------------  321 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT---------------------  321 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB---------------------
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc---------------------
Confidence            7 666778888999999999999999997 57776544 4 8999999999876 2221                     


Q ss_pred             ecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccC--CccccCCCCCcEEEcc
Q 041683          307 LSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSL--PMSIGTLSSLLSLNLR  384 (743)
Q Consensus       307 ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~  384 (743)
                                        ..+++|++|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..+++|++|+++
T Consensus       322 ------------------~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~  381 (570)
T 2z63_A          322 ------------------LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS  381 (570)
T ss_dssp             ------------------CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECC
T ss_pred             ------------------ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECC
Confidence                              1257899999999998866554  78899999999999998654  6778899999999999


Q ss_pred             CccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc-c
Q 041683          385 NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS-G  463 (743)
Q Consensus       385 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~  463 (743)
                      +|.+.+..+. +..+++|++|++++|.+.+..+...+..+++|++|++++|.+.+..|..+.++++|+.|++++|++. +
T Consensus       382 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  460 (570)
T 2z63_A          382 FNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  460 (570)
T ss_dssp             SCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence            9999876555 9999999999999999986656444557999999999999999888999999999999999999997 5


Q ss_pred             ccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccC
Q 041683          464 TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ  543 (743)
Q Consensus       464 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  543 (743)
                      .+|..+..++.                                              |++|++++|++++..|..|..++
T Consensus       461 ~~p~~~~~l~~----------------------------------------------L~~L~l~~n~l~~~~~~~~~~l~  494 (570)
T 2z63_A          461 FLPDIFTELRN----------------------------------------------LTFLDLSQCQLEQLSPTAFNSLS  494 (570)
T ss_dssp             EECSCCTTCTT----------------------------------------------CCEEECTTSCCCEECTTTTTTCT
T ss_pred             cchhhhhcccC----------------------------------------------CCEEECCCCccccCChhhhhccc
Confidence            67877776666                                              49999999999999899999999


Q ss_pred             CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCc
Q 041683          544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQ  585 (743)
Q Consensus       544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  585 (743)
                      +|++|++++|++++..|..|..+++|+.|++++|++++..|.
T Consensus       495 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999999999988888899999999999999999987764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.9e-45  Score=420.52  Aligned_cols=526  Identities=20%  Similarity=0.177  Sum_probs=392.3

Q ss_pred             cCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCccc
Q 041683            5 QFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI   84 (743)
Q Consensus         5 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~   84 (743)
                      +++ .+|..+.  +++++|||++|+|+++.+.+|.++++|++|+|++|.|+ .++..+|+++++|++|+|+ +|.+++..
T Consensus        42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls-~N~l~~l~  116 (635)
T 4g8a_A           42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT-GNPIQSLA  116 (635)
T ss_dssp             CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT-TCCCCEEC
T ss_pred             CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEcc-CCcCCCCC
Confidence            455 4666553  37999999999999998999999999999999999998 6666589999999999999 66788777


Q ss_pred             chhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCccccch
Q 041683           85 PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGSIPF  163 (743)
Q Consensus        85 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  163 (743)
                      +.+|.++++|++|++++|++++..+..++.++     +|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+.
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             HHHhcCCCCCCEEECCCCcCCCCChhhhhcCc-----ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            78899999999999999999886666778777     99999999999965 4678889999999999999999988888


Q ss_pred             hccCCCC----CCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeec-CCCCCCCccccEEEcCCCc------CCC
Q 041683          164 SLGQISN----LEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKI-NPNWVPPFQLTVLELRSCH------LGP  232 (743)
Q Consensus       164 ~~~~l~~----L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~------l~~  232 (743)
                      .|..+.+    ...++++.|.+. .++...+ ....++.+++.+|...... ...+..+..++...+..+.      +..
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~  269 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK  269 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCC-EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred             cccchhhhhhhhhhhhcccCccc-ccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence            7765544    347889999987 4544233 3445667777776443211 1122333344433332211      112


Q ss_pred             CcchhhcCCCCCCEEEccCCCCccc--cChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCC
Q 041683          233 RFPLWLQSQRELNDLDISSTRISAK--IPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNN  310 (743)
Q Consensus       233 ~~~~~l~~l~~L~~L~l~~n~i~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n  310 (743)
                      .....+.....+...++..+.....  .....+....+++.+++.++.+....+ +...        ..+  ..++++++
T Consensus       270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~--------~~L--~~L~l~~~  338 (635)
T 4g8a_A          270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYN--------FGW--QHLELVNC  338 (635)
T ss_dssp             CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSC--------CCC--SEEEEESC
T ss_pred             ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccc--------hhh--hhhhcccc
Confidence            2223333344444444433322111  111122334556666666655442211 1000        001  14555555


Q ss_pred             ccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcc--cCCccccCCCCCcEEEccCccc
Q 041683          311 ALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTG--SLPMSIGTLSSLLSLNLRNNIL  388 (743)
Q Consensus       311 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i  388 (743)
                      .+.+..+.       .+..|+.+++++|.+....  ....+++|+.|++++|.+..  ..+..+..+.+|+.+++..|.+
T Consensus       339 ~~~~~~~~-------~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~  409 (635)
T 4g8a_A          339 KFGQFPTL-------KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGV  409 (635)
T ss_dssp             EESSCCCC-------BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSE
T ss_pred             cccCcCcc-------cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccc
Confidence            55443221       2467899999998876433  34578999999999999863  4455667788999999999988


Q ss_pred             cccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc-cccCc
Q 041683          389 SGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS-GTIPR  467 (743)
Q Consensus       389 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~  467 (743)
                      ... +..+..+++|+.+++++|......+...+..+++++.+++++|.+.+..+..+..+++|+.|++++|.+. +..|.
T Consensus       410 ~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~  488 (635)
T 4g8a_A          410 ITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  488 (635)
T ss_dssp             EEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             ccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCch
Confidence            754 4568889999999999998876666666667899999999999999888889999999999999999854 34666


Q ss_pred             cccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCE
Q 041683          468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQS  547 (743)
Q Consensus       468 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  547 (743)
                      .|..++.                                              |++|||++|++++..|..|.++++|++
T Consensus       489 ~~~~l~~----------------------------------------------L~~L~Ls~N~L~~l~~~~f~~l~~L~~  522 (635)
T 4g8a_A          489 IFTELRN----------------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQV  522 (635)
T ss_dssp             CCTTCTT----------------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             hhhhccc----------------------------------------------cCEEECCCCccCCcChHHHcCCCCCCE
Confidence            6766655                                              599999999999999999999999999


Q ss_pred             EeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCcccccCCC
Q 041683          548 LNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       548 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~  609 (743)
                      |+|++|+|++..|..|..+++|++|||++|++++..|..+..+ ++|++|+|++|+++|.+.-
T Consensus       523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            9999999998889999999999999999999999999999988 6899999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.5e-46  Score=416.70  Aligned_cols=464  Identities=17%  Similarity=0.180  Sum_probs=323.4

Q ss_pred             CCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCC
Q 041683           67 TSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKR  146 (743)
Q Consensus        67 ~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~  146 (743)
                      ++|++|+++ ++.+++..|.+|.++++|++|++++|++++..+..+..++     +|++|++++|.+.+..+..|+++++
T Consensus        26 ~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG-----SLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT-----TCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCccEEECc-CCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc-----cCCEEECCCCccCccCHHHhccCCC
Confidence            344555554 3334444444455555555555555555444444444444     5566666666665556666677777


Q ss_pred             CCEEECcCccCccc-cchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEc
Q 041683          147 LNSLDLSNTILDGS-IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLEL  225 (743)
Q Consensus       147 L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  225 (743)
                      |++|++++|.+++. .|..++++++|++|++++|++.+.++...+.++++|++|++++|.+.+..+..+..+.+|++|++
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            77777777777642 35567777777777777777444565546777777777777777777766666767777777777


Q ss_pred             CCCcCCCCcchhhcCCCCCCEEEccCCCCcccc--ChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCC
Q 041683          226 RSCHLGPRFPLWLQSQRELNDLDISSTRISAKI--PRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGP  303 (743)
Q Consensus       226 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~  303 (743)
                      ++|.+.......+..+++|+.|++++|.+++..  +..+...+++|+.|++++|.+                        
T Consensus       180 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l------------------------  235 (549)
T 2z81_A          180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL------------------------  235 (549)
T ss_dssp             ECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE------------------------
T ss_pred             ccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc------------------------
Confidence            777665333333456777888888877776421  222223345566666655544                        


Q ss_pred             eEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccC------CccccCCCCCCEEECCCCcCcccC-----Cccc
Q 041683          304 IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDI------PDCWMNWLRLRALNLGHNNFTGSL-----PMSI  372 (743)
Q Consensus       304 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~  372 (743)
                               .+..+..+...+..+++|+.+++++|.+.+..      ...+..+.+|+.|+++++.+....     +..+
T Consensus       236 ---------~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~  306 (549)
T 2z81_A          236 ---------TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY  306 (549)
T ss_dssp             ---------EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred             ---------chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence                     34444444444555788999999999887532      134567889999999999876321     1223


Q ss_pred             cCCCCCcEEEccCccccccCCccc-CCCCCCCEEeCCCCcCcccCchhH--HhcccCCcEEEccCCcCcccCC--ccccC
Q 041683          373 GTLSSLLSLNLRNNILSGIIPTSF-KNFSSLEVLDLGENELVGSIPSWI--GERFSILKILNLRSNKFHGDFP--IQLCG  447 (743)
Q Consensus       373 ~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~~~  447 (743)
                      ...++|++|++++|.+.. +|..+ ..+++|++|++++|++.+.+|...  ...+++|++|++++|++++..+  ..+..
T Consensus       307 ~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  385 (549)
T 2z81_A          307 SLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT  385 (549)
T ss_dssp             HHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred             hhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence            345789999999999984 45444 689999999999999987665432  2368999999999999986532  45889


Q ss_pred             CCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEcc
Q 041683          448 LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVS  527 (743)
Q Consensus       448 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  527 (743)
                      +++|++|++++|++. .+|..+..++.                                              |++|+++
T Consensus       386 l~~L~~L~Ls~N~l~-~lp~~~~~~~~----------------------------------------------L~~L~Ls  418 (549)
T 2z81_A          386 LKNLTSLDISRNTFH-PMPDSCQWPEK----------------------------------------------MRFLNLS  418 (549)
T ss_dssp             CTTCCEEECTTCCCC-CCCSCCCCCTT----------------------------------------------CCEEECT
T ss_pred             CCCCCEEECCCCCCc-cCChhhccccc----------------------------------------------ccEEECC
Confidence            999999999999998 56766655544                                              5999999


Q ss_pred             CCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccC
Q 041683          528 KNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKI  607 (743)
Q Consensus       528 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  607 (743)
                      +|++++ +|..+  .++|++|+|++|++++.+    ..+++|++|++++|+++ .+|. ...+++|++||+++|++++.+
T Consensus       419 ~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~  489 (549)
T 2z81_A          419 STGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVP  489 (549)
T ss_dssp             TSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCC
T ss_pred             CCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcC
Confidence            999984 44433  268999999999999643    57899999999999999 6666 467899999999999999988


Q ss_pred             CCC-cccCCCCCccccCCCC
Q 041683          608 PSS-TQLQSFGASSFAGNDL  626 (743)
Q Consensus       608 p~~-~~~~~l~~~~~~~n~l  626 (743)
                      |.. ..+..++.+++.+|++
T Consensus       490 ~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          490 DGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             TTGGGGCTTCCEEECCSSCB
T ss_pred             HHHHhcCcccCEEEecCCCc
Confidence            874 5678888889998854

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.1e-47  Score=430.15  Aligned_cols=358  Identities=16%  Similarity=0.240  Sum_probs=256.3

Q ss_pred             ccCccccchhccCCCCCCEEEccCCCCccc-----------------cChhhhc--CCCCCCEEECCCCcceeecCCCCC
Q 041683          155 TILDGSIPFSLGQISNLEYLDLSNNKLNGT-----------------VSEIHFV--NLTKLAFFRANGNSLIFKINPNWV  215 (743)
Q Consensus       155 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~  215 (743)
                      |.+++ +|..|+++++|++|+|++|.+++.                 +|. .+.  ++++|++|++++|.+.+.++..+.
T Consensus       193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHh
Confidence            44444 444555555555555555555432                 443 333  555555555555555555555555


Q ss_pred             CCccccEEEcCCCc-CCC-CcchhhcCC------CCCCEEEccCCCCccccCh-hhhhhcccCceEecccCccccCCCCC
Q 041683          216 PPFQLTVLELRSCH-LGP-RFPLWLQSQ------RELNDLDISSTRISAKIPR-GFWNSIYQYFYLNISGNQIYGGIPKF  286 (743)
Q Consensus       216 ~~~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~i~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~  286 (743)
                      .+++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++ .+|. ..+..+++|++|++++|.++|.+|. 
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~-  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPA-  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCC-
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhh-
Confidence            55555555555555 544 455555544      66777777777666 4555 2334466666666666666544441 


Q ss_pred             CCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCC-CCEEECCCCcCc
Q 041683          287 DNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFT  365 (743)
Q Consensus       287 ~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~  365 (743)
                                                           +..+++|++|++++|++. .+|..+..+++ |++|++++|.++
T Consensus       349 -------------------------------------~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          349 -------------------------------------FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             -------------------------------------CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred             -------------------------------------hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence                                                 112457888888888888 66777888888 899999988888


Q ss_pred             ccCCccccCCC--CCcEEEccCccccccCCcccC-------CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCc
Q 041683          366 GSLPMSIGTLS--SLLSLNLRNNILSGIIPTSFK-------NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNK  436 (743)
Q Consensus       366 ~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~  436 (743)
                       .+|..+..++  +|++|++++|.+++..|..+.       .+++|++|++++|.+. .+|..++..+++|++|++++|+
T Consensus       391 -~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~  468 (636)
T 4eco_A          391 -YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNM  468 (636)
T ss_dssp             -SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSC
T ss_pred             -ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCC
Confidence             6777776654  889999999988888888777       7788999999999998 7888877678899999999999


Q ss_pred             CcccCCc-cccCC-------CCccEEEccCCccccccCcccc--ccccccccCccchhhhhhccccCCCCccccccccee
Q 041683          437 FHGDFPI-QLCGL-------AFLQILDVASNSLSGTIPRCIN--NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV  506 (743)
Q Consensus       437 l~~~~~~-~~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (743)
                      +. .+|. .+...       ++|+.|++++|++. .+|..+.  .++.                                
T Consensus       469 l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~--------------------------------  514 (636)
T 4eco_A          469 LT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY--------------------------------  514 (636)
T ss_dssp             CS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT--------------------------------
T ss_pred             CC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC--------------------------------
Confidence            88 4444 33333       38999999999998 6666554  5544                                


Q ss_pred             eeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeC------CCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683          507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNL------SHNLLTGRIPDNIGVMRSIESLDLSANQLS  580 (743)
Q Consensus       507 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (743)
                                    |+.|++++|++++ +|..+..+++|++|+|      ++|++.+.+|..+..+++|++|++++|++ 
T Consensus       515 --------------L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-  578 (636)
T 4eco_A          515 --------------LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-  578 (636)
T ss_dssp             --------------CCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-
T ss_pred             --------------cCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-
Confidence                          5899999999997 8888899999999999      56788889999999999999999999999 


Q ss_pred             CCCCccccCcCCCCeeeCcCCcccccCC
Q 041683          581 GQIPQSMSNLSFLNHLNLSNNNLVGKIP  608 (743)
Q Consensus       581 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p  608 (743)
                      +.+|..+.  ++|+.||+++|++.+.-+
T Consensus       579 ~~ip~~~~--~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          579 RKVNEKIT--PNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CBCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred             CccCHhHh--CcCCEEECcCCCCccccH
Confidence            57787765  799999999999886543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-46  Score=417.84  Aligned_cols=443  Identities=17%  Similarity=0.200  Sum_probs=241.3

Q ss_pred             CCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccC
Q 041683           42 NDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN  121 (743)
Q Consensus        42 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~  121 (743)
                      ++|++|+|++|.++ .++...|.++++|++|+++ +|.+++..|.+|.++++|++|++++|+++. +|..  .++     
T Consensus        21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~-----   90 (520)
T 2z7x_B           21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTV-----   90 (520)
T ss_dssp             TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCC-----
T ss_pred             ccccEEECCCCccc-ccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccC-----
Confidence            44444444444444 2222244444444444444 333444444444444444444444444442 2222  222     


Q ss_pred             CccEEEccCCcCcc-cchhhccCCCCCCEEECcCccCccccchhccCCCCC--CEEEccCCCC--ccccChhhhcCCC-C
Q 041683          122 ELESLRLGSSQIFG-HLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL--EYLDLSNNKL--NGTVSEIHFVNLT-K  195 (743)
Q Consensus       122 ~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~  195 (743)
                      +|++|++++|.+.+ ..|..|+++++|++|++++|.+++   ..+..+++|  ++|++++|.+  .+..+. .+..+. .
T Consensus        91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~-~l~~l~~~  166 (520)
T 2z7x_B           91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPE-GLQDFNTE  166 (520)
T ss_dssp             CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTT-TTTTCCEE
T ss_pred             CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccc-cccccccc
Confidence            45555555555544 234455555555555555555543   234444444  5555555555  333332 233332 1


Q ss_pred             CCEEECCCCcceeecCC-CCCCCccccEEEcCCCc-------CCCCcchhhcCCCCCCEEEccCCCCccccChhhhh--h
Q 041683          196 LAFFRANGNSLIFKINP-NWVPPFQLTVLELRSCH-------LGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWN--S  265 (743)
Q Consensus       196 L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~-------l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~--~  265 (743)
                      ...+++++|.+.+..+. .+..+.+|+.+++++|.       +.+..+ .+..+++|+.|++++|.+++..+..+..  .
T Consensus       167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  245 (520)
T 2z7x_B          167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVW  245 (520)
T ss_dssp             EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhh
Confidence            22344455544432222 33445555555555554       222333 5677788888888887776543332221  1


Q ss_pred             cccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC
Q 041683          266 IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP  345 (743)
Q Consensus       266 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  345 (743)
                      .++|++|++++|.+.+.+|...+.                                .....+++|+.+++++|.+  .+|
T Consensus       246 ~~~L~~L~l~~n~l~~~~p~~~~~--------------------------------~~~~~l~~L~~l~l~~n~~--~~p  291 (520)
T 2z7x_B          246 HTTVWYFSISNVKLQGQLDFRDFD--------------------------------YSGTSLKALSIHQVVSDVF--GFP  291 (520)
T ss_dssp             TSSCSEEEEEEEEEESCCCCCCCC--------------------------------CCSCCCCEEEEEEEEECCC--CSC
T ss_pred             hCcccEEEeecccccCccccchhh--------------------------------cccccCceeEeccccccce--ecc
Confidence            246777777777766555531100                                0012356677777777776  233


Q ss_pred             -ccccCC---CCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcc--cCchh
Q 041683          346 -DCWMNW---LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG--SIPSW  419 (743)
Q Consensus       346 -~~~~~l---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~  419 (743)
                       ..+..+   .+|+.|++++|.+....  .+..+++|++|++++|.+++..|..+..+++|++|++++|++.+  .+|..
T Consensus       292 ~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~  369 (520)
T 2z7x_B          292 QSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM  369 (520)
T ss_dssp             THHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred             hhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence             333333   45777777777665321  12456667777777777666666666666666666666666653  22222


Q ss_pred             HHhcccCCcEEEccCCcCcccCCc-cccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcc
Q 041683          420 IGERFSILKILNLRSNKFHGDFPI-QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSE  498 (743)
Q Consensus       420 ~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~  498 (743)
                      +. .+++|++|++++|.+.+.+|. .+..+++|                                               
T Consensus       370 ~~-~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L-----------------------------------------------  401 (520)
T 2z7x_B          370 TT-QMKSLQQLDISQNSVSYDEKKGDCSWTKSL-----------------------------------------------  401 (520)
T ss_dssp             HT-TCTTCCEEECCSSCCBCCGGGCSCCCCTTC-----------------------------------------------
T ss_pred             Hh-hCCCCCEEECCCCcCCcccccchhccCccC-----------------------------------------------
Confidence            22 455555555555555542332 23444444                                               


Q ss_pred             cccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCc
Q 041683          499 IFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQ  578 (743)
Q Consensus       499 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  578 (743)
                                             ++|++++|++++..|..+.  ++|++|+|++|+++ .+|..+..+++|++|++++|+
T Consensus       402 -----------------------~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          402 -----------------------LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQ  455 (520)
T ss_dssp             -----------------------CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred             -----------------------CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCc
Confidence                                   5555555555544444443  67888888888888 777777788889999999998


Q ss_pred             CCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683          579 LSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       579 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  609 (743)
                      ++...+..+..+++|++|++++|+++|.++.
T Consensus       456 l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~  486 (520)
T 2z7x_B          456 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  486 (520)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             CCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence            8843333488889999999999999987764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.5e-47  Score=429.82  Aligned_cols=427  Identities=19%  Similarity=0.238  Sum_probs=246.7

Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccc------c------ccCcc--------------------cc--
Q 041683           18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQ------G------NVSSL--------------------GL--   63 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------~------~~~~~--------------------~~--   63 (743)
                      .+++.|+|+++++.+.+|..|+++++|++|+|++|.+.      +      .+|..                    .+  
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            47889999999999888999999999999999999762      1      11110                    00  


Q ss_pred             -----------------cCCCCCCEEEcCC-CCcCCcccchhccCCCCCCEEEccCCcCccc-----------------c
Q 041683           64 -----------------ENLTSIKRLYLSE-NDELGGKIPTSFGKLCKLTSFSMRFTKLSQD-----------------I  108 (743)
Q Consensus        64 -----------------~~l~~L~~L~Ls~-~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------~  108 (743)
                                       .....++.+.+.. ++.+++ +|.+++++++|++|++++|.+++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                             0011122222221 234444 555566666666666666665553                 4


Q ss_pred             hhhhh--cccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCcc-Ccc-ccchhccCC------CCCCEEEccC
Q 041683          109 SEILG--IFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTI-LDG-SIPFSLGQI------SNLEYLDLSN  178 (743)
Q Consensus       109 ~~~l~--~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l------~~L~~L~L~~  178 (743)
                      |..++  .++     +|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+      ++|++|++++
T Consensus       240 p~~l~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~  314 (636)
T 4eco_A          240 TEDLKWDNLK-----DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY  314 (636)
T ss_dssp             TSCCCGGGCT-----TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred             chhhhhcccC-----CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence            55444  444     55555555555555555555555555555555555 554 455555444      5555555555


Q ss_pred             CCCccccCh-hhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCC-CCEEEccCCCCcc
Q 041683          179 NKLNGTVSE-IHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRE-LNDLDISSTRISA  256 (743)
Q Consensus       179 n~l~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~~  256 (743)
                      |+++ .+|. ..+.++++|++|++++|.+.+.++ .+..+++|++|++++|++. .+|.++..+++ |++|++++|.++ 
T Consensus       315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            5555 4443 235555555555555555554444 4444444555555444444 33434444444 444444444443 


Q ss_pred             ccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECc
Q 041683          257 KIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS  336 (743)
Q Consensus       257 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls  336 (743)
                      .+|..+.. .                                                           .+++|++|+++
T Consensus       391 ~lp~~~~~-~-----------------------------------------------------------~l~~L~~L~Ls  410 (636)
T 4eco_A          391 YIPNIFDA-K-----------------------------------------------------------SVSVMSAIDFS  410 (636)
T ss_dssp             SCCSCCCT-T-----------------------------------------------------------CSSCEEEEECC
T ss_pred             ccchhhhh-c-----------------------------------------------------------ccCccCEEECc
Confidence            23321110 0                                                           02345666666


Q ss_pred             CCcCcccCCcccc-------CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCC-------CCCC
Q 041683          337 KNNFSGDIPDCWM-------NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKN-------FSSL  402 (743)
Q Consensus       337 ~n~l~~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-------l~~L  402 (743)
                      +|.+.+..|..+.       .+++|++|++++|++++..+..+..+++|++|++++|.++.+.+..+..       +++|
T Consensus       411 ~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L  490 (636)
T 4eco_A          411 YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL  490 (636)
T ss_dssp             SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGC
T ss_pred             CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCc
Confidence            6666555555555       4455666666666655333333444555666666666555333222222       2266


Q ss_pred             CEEeCCCCcCcccCchhHH-hcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683          403 EVLDLGENELVGSIPSWIG-ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY  481 (743)
Q Consensus       403 ~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  481 (743)
                      ++|++++|+++ .+|..++ ..+++|+.|++++|++.+ +|..+..+++|+.|++++|+                     
T Consensus       491 ~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~---------------------  547 (636)
T 4eco_A          491 TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR---------------------  547 (636)
T ss_dssp             CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB---------------------
T ss_pred             cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc---------------------
Confidence            66666666665 5555443 245666666666666664 55555566666666665553                     


Q ss_pred             chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683          482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD  561 (743)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  561 (743)
                                                                 ++++|++.+.+|..+.++++|++|+|++|+++ .+|.
T Consensus       548 -------------------------------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~  583 (636)
T 4eco_A          548 -------------------------------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNE  583 (636)
T ss_dssp             -------------------------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCS
T ss_pred             -------------------------------------------ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCH
Confidence                                                       12567788888999999999999999999994 8888


Q ss_pred             CCCCCCCccEEECcCCcCCCCC
Q 041683          562 NIGVMRSIESLDLSANQLSGQI  583 (743)
Q Consensus       562 ~~~~l~~L~~L~Ls~N~l~~~~  583 (743)
                      .+.  ++|+.|++++|++....
T Consensus       584 ~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          584 KIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCC--TTCCEEECCSCTTCEEE
T ss_pred             hHh--CcCCEEECcCCCCcccc
Confidence            766  79999999999887543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.7e-45  Score=420.97  Aligned_cols=462  Identities=18%  Similarity=0.186  Sum_probs=225.7

Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEEc-CCCccccccCcccc---------------------------------
Q 041683           18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSV-YSNRLQGNVSSLGL---------------------------------   63 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~---------------------------------   63 (743)
                      .+++.|+|++|++.+.+|..|+++++|++|+| ++|.+.|..+....                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46888999999998888888999999999999 88877655332100                                 


Q ss_pred             -----------------cCCCCCCEEEcCC-CCcCCcccchhccCCCCCCEEEccCCcCccc-chhhhhcccccccCCcc
Q 041683           64 -----------------ENLTSIKRLYLSE-NDELGGKIPTSFGKLCKLTSFSMRFTKLSQD-ISEILGIFSACVANELE  124 (743)
Q Consensus        64 -----------------~~l~~L~~L~Ls~-~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~~~~~~L~  124 (743)
                                       .....++.+.++. +|.+++ +|..++++++|++|++++|.+++. ++...            
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~------------  469 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDW------------  469 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSC------------
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccc------------
Confidence                             0011122222221 233443 555555555555555555555541 00000            


Q ss_pred             EEEccCCcCcccchhhcc--CCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC-Ccc-ccChhhhc-------CC
Q 041683          125 SLRLGSSQIFGHLTNQLR--RFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK-LNG-TVSEIHFV-------NL  193 (743)
Q Consensus       125 ~L~L~~n~~~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------~l  193 (743)
                       +..+.|...+.+|..++  ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ .+|. .+.       .+
T Consensus       470 -~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l  547 (876)
T 4ecn_A          470 -EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTG  547 (876)
T ss_dssp             -SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTT
T ss_pred             -cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhccccc
Confidence             00000000002444443  45555555555555444455455555555555555554 443 3333 122       22


Q ss_pred             CCCCEEECCCCcceeecCC--CCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhccc-Cc
Q 041683          194 TKLAFFRANGNSLIFKINP--NWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQ-YF  270 (743)
Q Consensus       194 ~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~-L~  270 (743)
                      ++|++|++++|.+. .++.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+.. +++ |+
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~  622 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVE  622 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCC
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCC
Confidence            35555555555544 3333  4444555555555555554 344 4555555555555555554 34443222 333 44


Q ss_pred             eEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccc--
Q 041683          271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW--  348 (743)
Q Consensus       271 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--  348 (743)
                      .|++++|.++ .+|....                                   ....++|+.|++++|++.+.+|...  
T Consensus       623 ~L~Ls~N~L~-~lp~~~~-----------------------------------~~~~~~L~~L~Ls~N~l~g~ip~l~~~  666 (876)
T 4ecn_A          623 GLGFSHNKLK-YIPNIFN-----------------------------------AKSVYVMGSVDFSYNKIGSEGRNISCS  666 (876)
T ss_dssp             EEECCSSCCC-SCCSCCC-----------------------------------TTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred             EEECcCCCCC-cCchhhh-----------------------------------ccccCCCCEEECcCCcCCCccccchhh
Confidence            4444444433 2221000                                   0001235555555555544333211  


Q ss_pred             -c--CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccC-------CCCCCCEEeCCCCcCcccCch
Q 041683          349 -M--NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFK-------NFSSLEVLDLGENELVGSIPS  418 (743)
Q Consensus       349 -~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~  418 (743)
                       .  .+++|+.|++++|.++...+..+..+++|++|++++|.++.+.+..+.       ++++|+.|+|++|++. .+|.
T Consensus       667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~  745 (876)
T 4ecn_A          667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD  745 (876)
T ss_dssp             TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred             hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence             1  122444444444444422111222344444444444444422222221       1224555555555554 4444


Q ss_pred             hHH-hcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCc
Q 041683          419 WIG-ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQS  497 (743)
Q Consensus       419 ~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~  497 (743)
                      .++ ..+++|+.|+|++|++.+ +|..+..+++|+.|+|++|+                                     
T Consensus       746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~-------------------------------------  787 (876)
T 4ecn_A          746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR-------------------------------------  787 (876)
T ss_dssp             GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB-------------------------------------
T ss_pred             HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC-------------------------------------
Confidence            432 234455555555555553 34444455555555555443                                     


Q ss_pred             ccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCC
Q 041683          498 EIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSAN  577 (743)
Q Consensus       498 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  577 (743)
                                                 ++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++|+.|||++|
T Consensus       788 ---------------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N  837 (876)
T 4ecn_A          788 ---------------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADN  837 (876)
T ss_dssp             ---------------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSC
T ss_pred             ---------------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCC
Confidence                                       1234666667777777777777777777777 46676654  57777777777


Q ss_pred             cCCCCCCccccCcCCCCeeeCcCCccc
Q 041683          578 QLSGQIPQSMSNLSFLNHLNLSNNNLV  604 (743)
Q Consensus       578 ~l~~~~p~~l~~l~~L~~L~ls~N~l~  604 (743)
                      ++....+..+.....+..+.+.+|++.
T Consensus       838 ~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          838 PNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             TTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             CCCccChHHccccccchheeecCCCcc
Confidence            777666665555555666666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.7e-44  Score=414.37  Aligned_cols=387  Identities=21%  Similarity=0.275  Sum_probs=257.8

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCchh------------------------------------------
Q 041683            1 LSGNQFQGQIPSRLGNLTSLKYLDL-SSNELNSTVLGW------------------------------------------   37 (743)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~------------------------------------------   37 (743)
                      |++|+++|.+|++|++|++|++|+| ++|.+.+..+-.                                          
T Consensus       330 Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~  409 (876)
T 4ecn_A          330 LAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN  409 (876)
T ss_dssp             CTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred             CccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhh
Confidence            6789999999999999999999999 888664431100                                          


Q ss_pred             ---------hcCCCCCCEEEcCC--CccccccCcccccCCCCCCEEEcCCCCcCCc-----------------ccchhcc
Q 041683           38 ---------LSKVNDLEFLSVYS--NRLQGNVSSLGLENLTSIKRLYLSENDELGG-----------------KIPTSFG   89 (743)
Q Consensus        38 ---------~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~-----------------~~~~~l~   89 (743)
                               ......++.+.+..  |.+++ +|. .|+++++|++|+|+ +|.+++                 .+|..++
T Consensus       410 ~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~  486 (876)
T 4ecn_A          410 RNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELS  486 (876)
T ss_dssp             TCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCC
T ss_pred             hCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhh
Confidence                     01122344444443  88886 888 89999999999999 667877                 2666655


Q ss_pred             --CCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCc-Ccc-cchhhccCCC-------CCCEEECcCccCc
Q 041683           90 --KLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQ-IFG-HLTNQLRRFK-------RLNSLDLSNTILD  158 (743)
Q Consensus        90 --~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-~~~-~~~~~l~~l~-------~L~~L~Ls~n~l~  158 (743)
                        ++++|++|++++|.+.+.+|..++.++     +|++|++++|+ +++ .+|..+..++       +|++|++++|.++
T Consensus       487 f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-----~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          487 WSNLKDLTDVELYNCPNMTQLPDFLYDLP-----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             GGGCTTCCEEEEESCTTCCSCCGGGGGCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hccCCCCCEEECcCCCCCccChHHHhCCC-----CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence              777777777777766666666666666     66666666666 555 5555444333       6666666666666


Q ss_pred             cccch--hccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcch
Q 041683          159 GSIPF--SLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL  236 (743)
Q Consensus       159 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  236 (743)
                       .+|.  .|+++++|++|++++|+++ .+|  .+..+++|++|++++|.+.                         .+|.
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-------------------------~lp~  612 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-------------------------EIPE  612 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-------------------------CCCT
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-------------------------cchH
Confidence             5555  5666666666666666665 555  3555555555555555544                         4444


Q ss_pred             hhcCCCC-CCEEEccCCCCccccChhhhhh-cccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCcccc
Q 041683          237 WLQSQRE-LNDLDISSTRISAKIPRGFWNS-IYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSG  314 (743)
Q Consensus       237 ~l~~l~~-L~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~  314 (743)
                      .+..+++ |+.|++++|.++ .+|..+... .++|+.|++++|++.+.+|.+....                        
T Consensus       613 ~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l------------------------  667 (876)
T 4ecn_A          613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM------------------------  667 (876)
T ss_dssp             TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT------------------------
T ss_pred             HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh------------------------
Confidence            5555555 666666666665 455433221 1236777777777766555322100                        


Q ss_pred             ccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCcc-ccCC-------CCCcEEEccCc
Q 041683          315 SIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMS-IGTL-------SSLLSLNLRNN  386 (743)
Q Consensus       315 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l-------~~L~~L~L~~n  386 (743)
                              .....++|+.|++++|.+....+..+..+++|+.|+|++|+++ .+|.. +...       ++|++|+|++|
T Consensus       668 --------~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N  738 (876)
T 4ecn_A          668 --------DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN  738 (876)
T ss_dssp             --------TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred             --------ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence                    0011357999999999999544444558899999999999999 44543 3322       38999999999


Q ss_pred             cccccCCcccC--CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCc------CcccCCccccCCCCccEEEccC
Q 041683          387 ILSGIIPTSFK--NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNK------FHGDFPIQLCGLAFLQILDVAS  458 (743)
Q Consensus       387 ~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~~L~~L~Ls~  458 (743)
                      .++ .+|..+.  .+++|+.|+|++|++.+ +|..++ .+++|+.|+|++|+      +.+.+|..+..+++|+.|+|++
T Consensus       739 ~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~-~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~  815 (876)
T 4ecn_A          739 KLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGS  815 (876)
T ss_dssp             CCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG-GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             CCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhh-cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCC
Confidence            999 5677776  89999999999999985 888776 79999999998854      4444444444444444444444


Q ss_pred             Ccc
Q 041683          459 NSL  461 (743)
Q Consensus       459 N~l  461 (743)
                      |++
T Consensus       816 N~L  818 (876)
T 4ecn_A          816 NDI  818 (876)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.7e-43  Score=400.69  Aligned_cols=529  Identities=18%  Similarity=0.163  Sum_probs=389.1

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR  100 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~  100 (743)
                      ++.+-++-+++.+ |..+.  +++++|||++|.|+ .++..+|.++++|++|||+ +|.+++..+.+|.++++|++|+|+
T Consensus        34 ~~~~c~~~~l~~v-P~~lp--~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           34 ITYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             TEEECTTSCCSSC-CSSSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CEEECCCCCcCcc-CCCCC--cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEcc
Confidence            4567777777554 43332  47999999999999 6666689999999999999 778888888899999999999999


Q ss_pred             CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccc-cchhccCCCCCCEEEccCC
Q 041683          101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGS-IPFSLGQISNLEYLDLSNN  179 (743)
Q Consensus       101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n  179 (743)
                      +|+++...+..|..+.     +|++|++++|++++..+..|+++++|++|++++|.+++. .|..++.+++|++|++++|
T Consensus       109 ~N~l~~l~~~~f~~L~-----~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          109 GNPIQSLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             TCCCCEECGGGGTTCT-----TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCcCCCCCHHHhcCCC-----CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            9999987777888888     999999999999988888899999999999999999764 5788899999999999999


Q ss_pred             CCccccChhhhcCCCC----CCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCC-CcchhhcCCCCCCEEEccCCCC
Q 041683          180 KLNGTVSEIHFVNLTK----LAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGP-RFPLWLQSQRELNDLDISSTRI  254 (743)
Q Consensus       180 ~l~~~~~~~~~~~l~~----L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i  254 (743)
                      ++++..+. .+..+.+    ...++++.|.+....+..+ ....++.+++.+|.... ..+..+..+..++...+..+..
T Consensus       184 ~l~~~~~~-~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  261 (635)
T 4g8a_A          184 KIQSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  261 (635)
T ss_dssp             CCCEECGG-GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             cccccccc-cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccc
Confidence            99854433 5655444    3478999999887655444 44567889998886542 3345677788887766643322


Q ss_pred             cc-----ccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCC
Q 041683          255 SA-----KIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNN  329 (743)
Q Consensus       255 ~~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~  329 (743)
                      ..     ......+.....+...++..+............    ......+  ..+++..+.+.....      +.....
T Consensus       262 ~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~----~~~~~~l--~~l~~~~~~~~~~~~------~~~~~~  329 (635)
T 4g8a_A          262 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL----FNCLTNV--SSFSLVSVTIERVKD------FSYNFG  329 (635)
T ss_dssp             TTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT----TGGGTTC--SEEEEESCEEEECGG------GGSCCC
T ss_pred             ccccccccccccccccccchhhhhhhhhhhcccccchhhh----hhhhccc--ccccccccccccccc------cccchh
Confidence            11     122222333455555555544332111110000    0000001  145555554443221      223567


Q ss_pred             ccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccc--cCCcccCCCCCCCEEeC
Q 041683          330 IEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSG--IIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L  407 (743)
                      ++.|++.+|.+....+   ..+..|+.++++.|.+...  .....+++|+.|++++|.+..  ..+..+..+.+|+.+++
T Consensus       330 L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~  404 (635)
T 4g8a_A          330 WQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL  404 (635)
T ss_dssp             CSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred             hhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence            8888888887765433   3456788888888877633  234567888888888887753  34455667788888888


Q ss_pred             CCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683          408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI  486 (743)
Q Consensus       408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  486 (743)
                      +.|.+. .++..+. .+++|+.+++.++......+ ..|..+++++.+++++|.+.+..+..+..++.            
T Consensus       405 ~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~------------  470 (635)
T 4g8a_A          405 SFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------------  470 (635)
T ss_dssp             CSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT------------
T ss_pred             cccccc-ccccccc-ccccccchhhhhccccccccccccccccccccccccccccccccccccccchh------------
Confidence            888776 3333333 57888888888877664443 35777888888888888888777766655554            


Q ss_pred             hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcC-cccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683          487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIF-SGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV  565 (743)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  565 (743)
                                                        ++.|++++|.+ .+..|..|..+++|++|+|++|++++.+|..|.+
T Consensus       471 ----------------------------------L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~  516 (635)
T 4g8a_A          471 ----------------------------------LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS  516 (635)
T ss_dssp             ----------------------------------CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ----------------------------------hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence                                              59999999975 4467888999999999999999999999999999


Q ss_pred             CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCc-cc-CCCCCccccCCCC
Q 041683          566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSST-QL-QSFGASSFAGNDL  626 (743)
Q Consensus       566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~-~~-~~l~~~~~~~n~l  626 (743)
                      +++|++|+|++|+|++..|..|..+++|++|||++|++++..|... .+ .+++.+++.+|++
T Consensus       517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~  579 (635)
T 4g8a_A          517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  579 (635)
T ss_dssp             CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred             CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence            9999999999999999999999999999999999999999998763 23 5678888888854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.3e-44  Score=398.20  Aligned_cols=457  Identities=18%  Similarity=0.175  Sum_probs=328.6

Q ss_pred             CEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCcc
Q 041683           45 EFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELE  124 (743)
Q Consensus        45 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~  124 (743)
                      ++|++++|.++ .+|. .+.  ++|++|+++ ++.+.+..|.+|.++++|++|++++|++++..|..+..++     +|+
T Consensus         3 ~~l~ls~n~l~-~ip~-~~~--~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~   72 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPK-DLS--QKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ-----ELE   72 (520)
T ss_dssp             CEEECTTSCCS-SCCC-SCC--TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCT-----TCC
T ss_pred             ceEecCCCCcc-cccc-ccc--ccccEEECC-CCcccccChhhccccccccEEecCCCccCCcChHHhhccc-----CCC
Confidence            57999999998 7887 444  889999999 7778877788899999999999999998887788888877     899


Q ss_pred             EEEccCCcCcccchhhccCCCCCCEEECcCccCcc-ccchhccCCCCCCEEEccCCCCccccChhhhcCCCCC--CEEEC
Q 041683          125 SLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG-SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKL--AFFRA  201 (743)
Q Consensus       125 ~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--~~L~l  201 (743)
                      +|++++|++.. +|..  .+++|++|++++|.+++ ..|..|+++++|++|++++|++++    ..+..+++|  ++|++
T Consensus        73 ~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           73 YLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             EEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEE
T ss_pred             EEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEe
Confidence            99999998874 5544  78889999999998886 367888888899999998888874    246666666  77777


Q ss_pred             CCCcc--eeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcc
Q 041683          202 NGNSL--IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI  279 (743)
Q Consensus       202 ~~n~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l  279 (743)
                      ++|.+  .+..+..+..+..                       ....+++++|.+.+.++...+..+++|+.+++++|..
T Consensus       146 ~~n~l~~~~~~~~~l~~l~~-----------------------~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          146 VLGETYGEKEDPEGLQDFNT-----------------------ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             EECTTTTSSCCTTTTTTCCE-----------------------EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCS
T ss_pred             eccccccccccccccccccc-----------------------ceEEEEeccCcchhhhhhhhhhcccceeecccccccc
Confidence            77666  4433333333220                       1223445555555445544445555666666665541


Q ss_pred             ccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccc---cCCCCCCE
Q 041683          280 YGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW---MNWLRLRA  356 (743)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~  356 (743)
                      ....                          ..+.+.++     .+..+++|+.|++++|.+.+..+..+   ...++|++
T Consensus       203 ~~~~--------------------------~~~~~~~~-----~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~  251 (520)
T 2z7x_B          203 DNKC--------------------------SYFLSILA-----KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY  251 (520)
T ss_dssp             TTTT--------------------------HHHHHHHH-----GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred             cccc--------------------------ceeecchh-----hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence            0000                          00011111     22335667777777766653221111   11357888


Q ss_pred             EECCCCcCcccCCccc-----cCCCCCcEEEccCccccccCCcccCCC---CCCCEEeCCCCcCcccCchhHHhcccCCc
Q 041683          357 LNLGHNNFTGSLPMSI-----GTLSSLLSLNLRNNILSGIIPTSFKNF---SSLEVLDLGENELVGSIPSWIGERFSILK  428 (743)
Q Consensus       357 L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~~~~~~l---~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~  428 (743)
                      |++++|++++.+|..+     ..+++|+.+++++|.+ ......+..+   .+|+.|++++|.+. ..+.  ...+++|+
T Consensus       252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~  327 (520)
T 2z7x_B          252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPFL  327 (520)
T ss_dssp             EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCC
T ss_pred             EEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc-cccc--hhhCCccc
Confidence            8888888777777776     7788888888888887 2222344333   57888888888876 3331  13578899


Q ss_pred             EEEccCCcCcccCCccccCCCCccEEEccCCcccc--ccCccccccccccccCccchhhhhhccccCCCCccccccccee
Q 041683          429 ILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG--TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV  506 (743)
Q Consensus       429 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (743)
                      +|++++|++.+..|..+..+++|++|++++|++.+  .+|..+..++.                                
T Consensus       328 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~--------------------------------  375 (520)
T 2z7x_B          328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS--------------------------------  375 (520)
T ss_dssp             EEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT--------------------------------
T ss_pred             EEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC--------------------------------
Confidence            99999999988788888899999999999999885  34455555554                                


Q ss_pred             eeceeeehhcccccccEEEccCCcCcccCch-hhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCc
Q 041683          507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPV-EVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQ  585 (743)
Q Consensus       507 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  585 (743)
                                    |++|++++|++++.+|. .+..+++|++|++++|++++.+|..+.  ++|+.|++++|+++ .+|.
T Consensus       376 --------------L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~  438 (520)
T 2z7x_B          376 --------------LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK  438 (520)
T ss_dssp             --------------CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG
T ss_pred             --------------CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch
Confidence                          58999999999975665 488899999999999999988887765  79999999999999 7888


Q ss_pred             cccCcCCCCeeeCcCCcccccCCCC--cccCCCCCccccCCCC
Q 041683          586 SMSNLSFLNHLNLSNNNLVGKIPSS--TQLQSFGASSFAGNDL  626 (743)
Q Consensus       586 ~l~~l~~L~~L~ls~N~l~~~~p~~--~~~~~l~~~~~~~n~l  626 (743)
                      .+..+++|++|++++|+++. +|..  ..+..+..+++.+|++
T Consensus       439 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          439 QVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             GGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCC
Confidence            77899999999999999995 5543  4567788888888855

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.4e-43  Score=397.24  Aligned_cols=461  Identities=17%  Similarity=0.155  Sum_probs=287.6

Q ss_pred             CCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCE
Q 041683           17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS   96 (743)
Q Consensus        17 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~   96 (743)
                      +...+++|+++|+++++ |..+.  ++|++|+|++|.++ .++...|.++++|++|+++ +|.+++..|.+|.++++|++
T Consensus        30 ~~~~~~l~ls~~~L~~i-p~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLTHV-PKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCCSC-CTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECC-SCCCCEECTTTTTTCTTCCE
T ss_pred             cCCCcEEEcCCCCCccC-CCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECC-CCCCCcCCHHHhCCCCCCCE
Confidence            33458899999999764 44343  78999999999998 5554489999999999999 66888888889999999999


Q ss_pred             EEccCCcCcccchhhhhcccccccCCccEEEccCCcCccc-chhhccCCCCCCEEECcCccCccccchhccCCCCC--CE
Q 041683           97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGH-LTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL--EY  173 (743)
Q Consensus        97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--~~  173 (743)
                      |++++|.++. +|..  .++     +|++|++++|++.+. .|..|.++++|++|++++|.+++.   .+..+++|  ++
T Consensus       105 L~Ls~N~l~~-lp~~--~l~-----~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~  173 (562)
T 3a79_B          105 LDVSHNRLQN-ISCC--PMA-----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSC  173 (562)
T ss_dssp             EECTTSCCCE-ECSC--CCT-----TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred             EECCCCcCCc-cCcc--ccc-----cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeE
Confidence            9999999874 5544  444     899999999999773 467899999999999999998853   45555555  99


Q ss_pred             EEccCCCC--ccccChhhhcCCC--CCCEEECCCCcceeecCC-CCCCCccccEEEcCCCcCC----CCcchhhcCCCCC
Q 041683          174 LDLSNNKL--NGTVSEIHFVNLT--KLAFFRANGNSLIFKINP-NWVPPFQLTVLELRSCHLG----PRFPLWLQSQREL  244 (743)
Q Consensus       174 L~L~~n~l--~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~----~~~~~~l~~l~~L  244 (743)
                      |++++|.+  ++..+. .+..+.  .+ .+++++|.+.+..+. .+..+.+|+.+++++|...    ......+..+++|
T Consensus       174 L~L~~n~l~~~~~~~~-~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L  251 (562)
T 3a79_B          174 ILLDLVSYHIKGGETE-SLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL  251 (562)
T ss_dssp             EEEEESSCCCCSSSCC-EEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred             EEeecccccccccCcc-cccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence            99999988  655554 455544  22 456677766543222 2334455666666665321    0112234455555


Q ss_pred             CEEEccCCCCccccChhhhh--hcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhcc
Q 041683          245 NDLDISSTRISAKIPRGFWN--SIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ  322 (743)
Q Consensus       245 ~~L~l~~n~i~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~  322 (743)
                      +.++++++.+.+.....+..  ..++|++|++++|.+++                                         
T Consensus       252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----------------------------------------  290 (562)
T 3a79_B          252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE-----------------------------------------  290 (562)
T ss_dssp             EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECS-----------------------------------------
T ss_pred             eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeec-----------------------------------------
Confidence            55555555443321111110  11244444444444443                                         


Q ss_pred             CCCCCCCccEEECcCCcCcccCCccc-----cCCCCCCEEECCCCcCcccCC-ccccC---CCCCcEEEccCccccccCC
Q 041683          323 GENFSNNIEFLKLSKNNFSGDIPDCW-----MNWLRLRALNLGHNNFTGSLP-MSIGT---LSSLLSLNLRNNILSGIIP  393 (743)
Q Consensus       323 ~~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~~-~~~~~---l~~L~~L~L~~n~i~~~~~  393 (743)
                                          .+|..+     ..++.|+.++++.+.+  .+| ..+..   ..+|++|++++|.+.... 
T Consensus       291 --------------------~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-  347 (562)
T 3a79_B          291 --------------------RIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV-  347 (562)
T ss_dssp             --------------------CCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred             --------------------cccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc-
Confidence                                333333     2333333333333333  111 11111   134555555555443211 


Q ss_pred             cccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCccc--CCccccCCCCccEEEccCCccccccCc-ccc
Q 041683          394 TSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGD--FPIQLCGLAFLQILDVASNSLSGTIPR-CIN  470 (743)
Q Consensus       394 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~  470 (743)
                       ....+++|++|++++|.+.+.+|..+. .+++|++|++++|++.+.  .|..+..+++|++|++++|++.+.+|. .+.
T Consensus       348 -~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~  425 (562)
T 3a79_B          348 -CPPSPSSFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA  425 (562)
T ss_dssp             -CCSSCCCCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred             -CccCCCCceEEECCCCccccchhhhhc-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence             113445555555555555543443332 455555555555555532  223455666666666666666653433 233


Q ss_pred             ccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeC
Q 041683          471 NLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNL  550 (743)
Q Consensus       471 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  550 (743)
                      .++.                                              |++|++++|++++..|..+.  ++|++|+|
T Consensus       426 ~l~~----------------------------------------------L~~L~l~~n~l~~~~~~~l~--~~L~~L~L  457 (562)
T 3a79_B          426 WAES----------------------------------------------ILVLNLSSNMLTGSVFRCLP--PKVKVLDL  457 (562)
T ss_dssp             CCTT----------------------------------------------CCEEECCSSCCCGGGGSSCC--TTCSEEEC
T ss_pred             Cccc----------------------------------------------CCEEECCCCCCCcchhhhhc--CcCCEEEC
Confidence            3333                                              46677777777665555443  68999999


Q ss_pred             CCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          551 SHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       551 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                      ++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.+|..
T Consensus       458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  516 (562)
T 3a79_B          458 HNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI  516 (562)
T ss_dssp             CSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred             CCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence            999998 77777779999999999999999544344899999999999999999988754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=7.7e-40  Score=357.73  Aligned_cols=374  Identities=18%  Similarity=0.173  Sum_probs=256.5

Q ss_pred             CCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEE
Q 041683          145 KRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLE  224 (743)
Q Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  224 (743)
                      ++|++|+|++|.+++..|..|+++++|++|++++|.+.+.++...|.++++|++|++++|.+....+..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45556666666655555555555666666666666555444444555566666666666665555555555566666666


Q ss_pred             cCCCcCCCCcchh--hcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCC
Q 041683          225 LRSCHLGPRFPLW--LQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLG  302 (743)
Q Consensus       225 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~  302 (743)
                      +++|.+.+..+..  +..+++|++|++++|.+++..|..++..+++|++|++++|.+.+..+....              
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--------------  175 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL--------------  175 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG--------------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh--------------
Confidence            6666655433333  666677777777777776555655555666677666666666543332000              


Q ss_pred             CeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCcc--------ccCCCCCCEEECCCCcCcccCCccccC
Q 041683          303 PIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDC--------WMNWLRLRALNLGHNNFTGSLPMSIGT  374 (743)
Q Consensus       303 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~  374 (743)
                                         . + ...+++.|++++|.+.+..+..        +..+++|++|++++|++++..|..+..
T Consensus       176 -------------------~-l-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          176 -------------------N-F-QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             -------------------G-G-TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             -------------------c-c-ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence                               0 0 0145677777777776544332        224566777777777777665555543


Q ss_pred             C---CCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHH-hcccCCcEEEccCCcCcccCCccccCCCC
Q 041683          375 L---SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG-ERFSILKILNLRSNKFHGDFPIQLCGLAF  450 (743)
Q Consensus       375 l---~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  450 (743)
                      .   ++|+.|++++|...+...              ..+.+.+..+..+. ...++|++|++++|.+.+..|..+..+++
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  300 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD  300 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCC
Confidence            2   677777777776553211              11111111111111 12468999999999999888888999999


Q ss_pred             ccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCc
Q 041683          451 LQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNI  530 (743)
Q Consensus       451 L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~  530 (743)
                      |++|++++|++.+..|..|.+++.                                              |++|++++|+
T Consensus       301 L~~L~Ls~n~l~~~~~~~~~~l~~----------------------------------------------L~~L~Ls~N~  334 (455)
T 3v47_A          301 LEQLTLAQNEINKIDDNAFWGLTH----------------------------------------------LLKLNLSQNF  334 (455)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTT----------------------------------------------CCEEECCSSC
T ss_pred             CCEEECCCCcccccChhHhcCccc----------------------------------------------CCEEECCCCc
Confidence            999999999999887877777666                                              4899999999


Q ss_pred             CcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          531 FSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       531 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                      +++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus       335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            99888999999999999999999999888999999999999999999999877788899999999999999999999975


Q ss_pred             ccc
Q 041683          611 TQL  613 (743)
Q Consensus       611 ~~~  613 (743)
                      ..+
T Consensus       415 ~~l  417 (455)
T 3v47_A          415 DYL  417 (455)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-40  Score=373.22  Aligned_cols=459  Identities=18%  Similarity=0.191  Sum_probs=313.3

Q ss_pred             CCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccc
Q 041683           40 KVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACV  119 (743)
Q Consensus        40 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~  119 (743)
                      .+...+++++++|.++ .+|. .+.  ++|++|+++ ++.+++..|.+|.++++|++|++++|.+++..|..+..++   
T Consensus        29 ~~~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---  100 (562)
T 3a79_B           29 SNELESMVDYSNRNLT-HVPK-DLP--PRTKALSLS-QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQ---  100 (562)
T ss_dssp             ----CCEEECTTSCCC-SCCT-TSC--TTCCEEECC-SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCT---
T ss_pred             ccCCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECC-CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCC---
Confidence            3445578888888887 5776 332  678888888 6667776677788888888888888777766666666666   


Q ss_pred             cCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccc-cchhccCCCCCCEEEccCCCCccccChhhhcCCCCC--
Q 041683          120 ANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGS-IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKL--  196 (743)
Q Consensus       120 ~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L--  196 (743)
                        +|++|++++|.+.. +|..  .+++|++|++++|.+++. .|..|+++++|++|++++|++++ .   .+..+++|  
T Consensus       101 --~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L  171 (562)
T 3a79_B          101 --DLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHL  171 (562)
T ss_dssp             --TCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCE
T ss_pred             --CCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-C---chhhhhhcee
Confidence              77777777777753 4433  667777777777777653 34667777777777777776652 1   23333443  


Q ss_pred             CEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCC-CCCEEEccCCCCccccChhhhhhcccCceEecc
Q 041683          197 AFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR-ELNDLDISSTRISAKIPRGFWNSIYQYFYLNIS  275 (743)
Q Consensus       197 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~  275 (743)
                      ++|++++|.+..                      .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.++++
T Consensus       172 ~~L~L~~n~l~~----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~  229 (562)
T 3a79_B          172 SCILLDLVSYHI----------------------KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK  229 (562)
T ss_dssp             EEEEEEESSCCC----------------------CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEE
T ss_pred             eEEEeecccccc----------------------cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccc
Confidence            555555555400                      333444443332 111445566666555555555556666666666


Q ss_pred             cCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCccc----CCccccCC
Q 041683          276 GNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD----IPDCWMNW  351 (743)
Q Consensus       276 ~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l  351 (743)
                      +|+...                            ..+.+.     ...+...+.++.|+++++.+.+.    .+.. ...
T Consensus       230 ~n~~~~----------------------------~~l~~~-----~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~  275 (562)
T 3a79_B          230 LNDENC----------------------------QRLMTF-----LSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWP  275 (562)
T ss_dssp             CCSTTH----------------------------HHHHHH-----HHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTT
T ss_pred             cccccc----------------------------chHHHH-----HHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhc
Confidence            663110                            000000     01122345677777766655432    1111 234


Q ss_pred             CCCCEEECCCCcCcccCCccc-----cCCCCCcEEEccCccccccCC-cccC---CCCCCCEEeCCCCcCcccCchhHHh
Q 041683          352 LRLRALNLGHNNFTGSLPMSI-----GTLSSLLSLNLRNNILSGIIP-TSFK---NFSSLEVLDLGENELVGSIPSWIGE  422 (743)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~L~~n~i~~~~~-~~~~---~l~~L~~L~Ls~n~i~~~~~~~~~~  422 (743)
                      ++|++|++++|.+++.+|..+     ..++.|+.++++.+.+  ..| ..+.   ...+|++|++++|.+. ..+.  ..
T Consensus       276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~~--~~  350 (562)
T 3a79_B          276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-HMVC--PP  350 (562)
T ss_dssp             SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-CCCC--CS
T ss_pred             ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-cccC--cc
Confidence            589999999999998888876     6666667777777766  233 2222   2267999999999986 3331  13


Q ss_pred             cccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccc--cCccccccccccccCccchhhhhhccccCCCCcccc
Q 041683          423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT--IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIF  500 (743)
Q Consensus       423 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~  500 (743)
                      .+++|++|++++|++.+..|..+.++++|+.|++++|++.+.  +|..+..++.                          
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~--------------------------  404 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS--------------------------  404 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT--------------------------
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC--------------------------
Confidence            688999999999999988899999999999999999999863  2344555554                          


Q ss_pred             cccceeeeceeeehhcccccccEEEccCCcCcccCch-hhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcC
Q 041683          501 EDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV-EVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQL  579 (743)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  579 (743)
                                          |++|++++|++++.+|. .+..+++|++|++++|++++.+|..+.  ++|+.|++++|++
T Consensus       405 --------------------L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l  462 (562)
T 3a79_B          405 --------------------LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI  462 (562)
T ss_dssp             --------------------CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCC
T ss_pred             --------------------CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcC
Confidence                                59999999999985554 588999999999999999988887665  7999999999999


Q ss_pred             CCCCCccccCcCCCCeeeCcCCcccccCCC--CcccCCCCCccccCCCC
Q 041683          580 SGQIPQSMSNLSFLNHLNLSNNNLVGKIPS--STQLQSFGASSFAGNDL  626 (743)
Q Consensus       580 ~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~--~~~~~~l~~~~~~~n~l  626 (743)
                      + .+|..+..+++|++|++++|++++ +|.  ...++.++.+++.+|++
T Consensus       463 ~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          463 M-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             C-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCB
T ss_pred             c-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCc
Confidence            9 677777799999999999999995 554  35677788888888854

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-38  Score=347.75  Aligned_cols=385  Identities=20%  Similarity=0.219  Sum_probs=263.8

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCccc-chhccCCCCCCEEEc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI-PTSFGKLCKLTSFSM   99 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~-~~~l~~l~~L~~L~L   99 (743)
                      +.++.++++++.+. . +  .++|++|+|++|.+++..+. .|.++++|++|+++ ++.+.+.+ +.+|.++++|++|++
T Consensus        13 ~~~~c~~~~l~~lp-~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           13 YNAICINRGLHQVP-E-L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVE-QQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             TEEECCSSCCSSCC-C-C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECC-CCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             cccCcCCCCcccCC-C-C--CCccCEEEecCCccCcCChh-HhccCccccEEECc-CCcccceECcccccccccCCEEeC
Confidence            45667777664433 2 2  26677777777777744344 67777777777777 44444333 455666666666666


Q ss_pred             cCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhh--ccCCCCCCEEECcCccCccccchh-ccCCCCCCEEEc
Q 041683          100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQ--LRRFKRLNSLDLSNTILDGSIPFS-LGQISNLEYLDL  176 (743)
Q Consensus       100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L  176 (743)
                      ++|.+++..|..++.++     +|++|++++|.+.+..+..  +..+++|++|++++|.+++..|.. +.++++|++|++
T Consensus        87 s~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLA-----NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             TTCTTCEECTTTTTTCT-----TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             CCCccCccChhhccCcc-----cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            66666555555555554     5555555555555433332  555555555555555555444443 455555555555


Q ss_pred             cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCC--ccccEEEcCCCcCCCCcchh--------hcCCCCCCE
Q 041683          177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPP--FQLTVLELRSCHLGPRFPLW--------LQSQRELND  246 (743)
Q Consensus       177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~--------l~~l~~L~~  246 (743)
                      ++|+++                         +..+..+..+  .+++.|++++|.+....+.+        +..+++|++
T Consensus       162 ~~n~l~-------------------------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~  216 (455)
T 3v47_A          162 TFNKVK-------------------------SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT  216 (455)
T ss_dssp             TTCCBS-------------------------CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred             CCCccc-------------------------ccChhhhhccccccccccccccCcccccchhhccccccccccccceeee
Confidence            555554                         3333333322  34555556655555433332        235577888


Q ss_pred             EEccCCCCccccChhhhhhc--ccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCC
Q 041683          247 LDISSTRISAKIPRGFWNSI--YQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGE  324 (743)
Q Consensus       247 L~l~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~  324 (743)
                      |++++|.+++..|..+....  .+++.|++++|...+.....                       +.+.+.....+..  
T Consensus       217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~--  271 (455)
T 3v47_A          217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH-----------------------TNFKDPDNFTFKG--  271 (455)
T ss_dssp             EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC-----------------------CSSCCCCTTTTGG--
T ss_pred             EecCCCcccccchhhhhccccccceeeEeeccccccccccch-----------------------hhhccCccccccc--
Confidence            88888888877776665532  67888888888765422110                       0111100000000  


Q ss_pred             CCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683          325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV  404 (743)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  404 (743)
                      ...++|++|++++|.+.+..|..+..+++|++|++++|++++..|..|.++++|++|++++|.+++..+..|..+++|++
T Consensus       272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  351 (455)
T 3v47_A          272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV  351 (455)
T ss_dssp             GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred             ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence            01468999999999999999999999999999999999999888999999999999999999999988999999999999


Q ss_pred             EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCc
Q 041683          405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR  467 (743)
Q Consensus       405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  467 (743)
                      |++++|++.+..|..+. .+++|++|++++|++++..+..+..+++|++|++++|++.+..|.
T Consensus       352 L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          352 LDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             EECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             EECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99999999866666654 799999999999999987777889999999999999999987773

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.6e-39  Score=351.59  Aligned_cols=403  Identities=24%  Similarity=0.256  Sum_probs=197.1

Q ss_pred             CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCC
Q 041683           16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLT   95 (743)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~   95 (743)
                      ..++|++|++++|.+ +.+|..|+++++|++|++++|.+++.+|. .++++++|+.+++.++ .           ..+++
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c-~-----------~~~l~   74 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDC-L-----------DRQAH   74 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHH-H-----------HHTCS
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhh-h-----------ccCCC
Confidence            357888888888888 66777788888888888888888777777 6777777655555411 1           13455


Q ss_pred             EEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEE
Q 041683           96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD  175 (743)
Q Consensus        96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  175 (743)
                      +|++++|.+++ +|..   .+     +|++|++++|.+.+ +|..   .++|++|++++|.+++ +|..   .++|++|+
T Consensus        75 ~L~l~~~~l~~-lp~~---~~-----~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~  137 (454)
T 1jl5_A           75 ELELNNLGLSS-LPEL---PP-----HLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLG  137 (454)
T ss_dssp             EEECTTSCCSC-CCSC---CT-----TCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEE
T ss_pred             EEEecCCcccc-CCCC---cC-----CCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEE
Confidence            66666665544 2211   11     56666666666654 3322   2556666666666653 2211   14566666


Q ss_pred             ccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCc
Q 041683          176 LSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRIS  255 (743)
Q Consensus       176 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  255 (743)
                      +++|+++ .+|.  +.++++|++|++++|++.+. +..   ..+|++|++++|++.+ +| .+..+              
T Consensus       138 L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l--------------  194 (454)
T 1jl5_A          138 VSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNL--------------  194 (454)
T ss_dssp             CCSSCCS-SCCC--CTTCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTC--------------
T ss_pred             CcCCCCC-CCcc--cCCCCCCCEEECCCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCC--------------
Confidence            6666665 3442  55666666666666655431 111   1244444444444432 22 23444              


Q ss_pred             cccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEEC
Q 041683          256 AKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKL  335 (743)
Q Consensus       256 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L  335 (743)
                                 ++|++|++++|.+++ +|.                                        ..++|++|++
T Consensus       195 -----------~~L~~L~l~~N~l~~-l~~----------------------------------------~~~~L~~L~l  222 (454)
T 1jl5_A          195 -----------PFLTAIYADNNSLKK-LPD----------------------------------------LPLSLESIVA  222 (454)
T ss_dssp             -----------TTCCEEECCSSCCSS-CCC----------------------------------------CCTTCCEEEC
T ss_pred             -----------CCCCEEECCCCcCCc-CCC----------------------------------------CcCcccEEEC
Confidence                       444444444444432 110                                        0135667777


Q ss_pred             cCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 041683          336 SKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS  415 (743)
Q Consensus       336 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~  415 (743)
                      ++|.+. .+| .+..+++|++|++++|++++ +|..   +++|++|++++|.+++ +|..   +++|++|++++|.+.+ 
T Consensus       223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-  291 (454)
T 1jl5_A          223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-  291 (454)
T ss_dssp             CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-
T ss_pred             cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-
Confidence            777666 344 36667777777777777764 3332   3567777777777765 3322   3667777777777763 


Q ss_pred             CchhHHhcccCCcEEEccCCcCcccCCccccCC-CCccEEEccCCccccccCccccccccccccCccchhhhhhccccCC
Q 041683          416 IPSWIGERFSILKILNLRSNKFHGDFPIQLCGL-AFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSE  494 (743)
Q Consensus       416 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~  494 (743)
                      +|.    ..++|++|++++|++.+.     ..+ ++|++|++++|++.+ +|..                          
T Consensus       292 l~~----~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~--------------------------  335 (454)
T 1jl5_A          292 LSE----LPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIE-LPAL--------------------------  335 (454)
T ss_dssp             ESC----CCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSC-CCCC--------------------------
T ss_pred             ccC----cCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccc-cccc--------------------------
Confidence            331    124677777777777642     122 467777777777764 3332                          


Q ss_pred             CCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcc--cCCCCCCCCCCccEE
Q 041683          495 GQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG--RIPDNIGVMRSIESL  572 (743)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L  572 (743)
                                             ++.|++|++++|++++ +|.   .+++|++|++++|++++  .+|..++.       
T Consensus       336 -----------------------~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-------  381 (454)
T 1jl5_A          336 -----------------------PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED-------  381 (454)
T ss_dssp             -----------------------CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-------
T ss_pred             -----------------------CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh-------
Confidence                                   1225777777777773 444   36778888888888876  55555442       


Q ss_pred             ECcCCcCCCCCCccccCcCCCCeeeCcCCcccc--cCCC
Q 041683          573 DLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG--KIPS  609 (743)
Q Consensus       573 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~--~~p~  609 (743)
                       ++.|.+.+.+|..   +++|++||+++|++++  .+|.
T Consensus       382 -L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~  416 (454)
T 1jl5_A          382 -LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE  416 (454)
T ss_dssp             -EECCC---------------------------------
T ss_pred             -hhhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence             2346666666653   4788888899888887  6664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.3e-37  Score=334.74  Aligned_cols=400  Identities=23%  Similarity=0.287  Sum_probs=246.3

Q ss_pred             CCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCC
Q 041683           65 NLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRF  144 (743)
Q Consensus        65 ~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l  144 (743)
                      +.+.|++|+++ ++.+ +.+|.+++++++|++|++++|.+.+.+|..++.+.     +|+.+++++|..           
T Consensus         9 ~~~~L~~L~l~-~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~-----~L~~l~l~~c~~-----------   70 (454)
T 1jl5_A            9 SNTFLQEPLRH-SSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-----EMAVSRLRDCLD-----------   70 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCH-----HHHHHHHHHHHH-----------
T ss_pred             ccccchhhhcc-cCch-hhCChhHhcccchhhhhccCCcccccCCcccccch-----hcchhhhhhhhc-----------
Confidence            35788888888 5566 77888888888888888888888877777777665     554444443321           


Q ss_pred             CCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEE
Q 041683          145 KRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLE  224 (743)
Q Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  224 (743)
                      .++++|++++|.+++ +|..   .++|++|++++|.+++ +|.    ..++|++|++++|.+.+...  +  .++|++|+
T Consensus        71 ~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~  137 (454)
T 1jl5_A           71 RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKALSD--L--PPLLEYLG  137 (454)
T ss_dssp             HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCCCS--C--CTTCCEEE
T ss_pred             cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcccC--C--CCCCCEEE
Confidence            345667777766664 3321   2567777777777663 443    13567777777766654211  1  14677777


Q ss_pred             cCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCe
Q 041683          225 LRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPI  304 (743)
Q Consensus       225 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~  304 (743)
                      +++|++.+ +| .+..+++|++|++++|.+++ +|..    ..+|++|++++|++++ +|.                   
T Consensus       138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~~-------------------  190 (454)
T 1jl5_A          138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LPE-------------------  190 (454)
T ss_dssp             CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CCC-------------------
T ss_pred             CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Ccc-------------------
Confidence            77777765 55 47788888888888888864 5543    2478888888887763 221                   


Q ss_pred             EEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc
Q 041683          305 FDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLR  384 (743)
Q Consensus       305 l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  384 (743)
                                         +..+++|++|++++|++.+ +|..   .++|++|++++|.+. .+| .+..+++|++|+++
T Consensus       191 -------------------~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~  245 (454)
T 1jl5_A          191 -------------------LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYAD  245 (454)
T ss_dssp             -------------------CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECC
T ss_pred             -------------------ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECC
Confidence                               2346789999999999885 3432   258999999999988 566 48889999999999


Q ss_pred             CccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccc
Q 041683          385 NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT  464 (743)
Q Consensus       385 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  464 (743)
                      +|.+++. |.   .+++|++|++++|++. .+|..    +++|++|++++|++.+. +..   .++|+.|++++|++.+.
T Consensus       246 ~N~l~~l-~~---~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i  312 (454)
T 1jl5_A          246 NNLLKTL-PD---LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSL  312 (454)
T ss_dssp             SSCCSSC-CS---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEE
T ss_pred             CCcCCcc-cc---cccccCEEECCCCccc-ccCcc----cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcc
Confidence            9998863 33   2478999999999987 46642    57899999999998863 211   26889999999988741


Q ss_pred             cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCC
Q 041683          465 IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQG  544 (743)
Q Consensus       465 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  544 (743)
                       +.    +                                             .+.|++|++++|++++ +|..   +++
T Consensus       313 -~~----~---------------------------------------------~~~L~~L~Ls~N~l~~-lp~~---~~~  338 (454)
T 1jl5_A          313 -CD----L---------------------------------------------PPSLEELNVSNNKLIE-LPAL---PPR  338 (454)
T ss_dssp             -CC----C---------------------------------------------CTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred             -cC----C---------------------------------------------cCcCCEEECCCCcccc-cccc---CCc
Confidence             11    1                                             1236899999999986 5543   588


Q ss_pred             CCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCC--CCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCcccc
Q 041683          545 LQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSG--QIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFA  622 (743)
Q Consensus       545 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~  622 (743)
                      |++|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..        ++.|.+.|.+|..  +..++.++++
T Consensus       339 L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~--~~~L~~L~ls  404 (454)
T 1jl5_A          339 LERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL--PQNLKQLHVE  404 (454)
T ss_dssp             CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC--------------------
T ss_pred             CCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc--cCcCCEEECC
Confidence            999999999998 5666   47899999999999997  56665543        3457888888873  5678888999


Q ss_pred             CCCCCC
Q 041683          623 GNDLCG  628 (743)
Q Consensus       623 ~n~l~~  628 (743)
                      +|.+.+
T Consensus       405 ~N~l~~  410 (454)
T 1jl5_A          405 TNPLRE  410 (454)
T ss_dssp             ------
T ss_pred             CCcCCc
Confidence            997765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.6e-36  Score=328.34  Aligned_cols=368  Identities=18%  Similarity=0.166  Sum_probs=299.4

Q ss_pred             cCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCccc
Q 041683            5 QFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKI   84 (743)
Q Consensus         5 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~   84 (743)
                      .+.+..+..+.++++|++|++++|.+++. | .|..+++|++|++++|.+++ ++   ++.+++|++|+++ ++.+++. 
T Consensus        29 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls-~N~l~~~-  100 (457)
T 3bz5_A           29 EMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACD-SNKLTNL-  100 (457)
T ss_dssp             TCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECC-SSCCSCC-
T ss_pred             CcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECc-CCCCcee-
Confidence            34445566788999999999999999876 4 69999999999999999984 43   8899999999999 6677764 


Q ss_pred             chhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchh
Q 041683           85 PTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS  164 (743)
Q Consensus        85 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  164 (743)
                      +  ++++++|++|++++|++++. +  ++.++     +|++|++++|++++. +  +..+++|++|++++|...+.+  .
T Consensus       101 ~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~-----~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~  165 (457)
T 3bz5_A          101 D--VTPLTKLTYLNCDTNKLTKL-D--VSQNP-----LLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--D  165 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCC-C--CTTCT-----TCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--C
T ss_pred             e--cCCCCcCCEEECCCCcCCee-c--CCCCC-----cCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--c
Confidence            3  88999999999999999873 3  56666     999999999999874 3  889999999999999655454  5


Q ss_pred             ccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCC
Q 041683          165 LGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQREL  244 (743)
Q Consensus       165 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  244 (743)
                      ++.+++|++|++++|++++ ++   +..+++|++|++++|.+++.   .+..+++|+.|++++|++.+ +|  +..+++|
T Consensus       166 ~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L  235 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQL  235 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTC
T ss_pred             cccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCC
Confidence            7889999999999999984 54   78899999999999998875   47888999999999999987 45  7889999


Q ss_pred             CEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCC
Q 041683          245 NDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGE  324 (743)
Q Consensus       245 ~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~  324 (743)
                      +.|++++|.+++. |.   ..+++|+.|++++|.+.                       .+++++|.+.+.+|      .
T Consensus       236 ~~L~l~~N~l~~~-~~---~~l~~L~~L~l~~n~L~-----------------------~L~l~~n~~~~~~~------~  282 (457)
T 3bz5_A          236 TYFDCSVNPLTEL-DV---STLSKLTTLHCIQTDLL-----------------------EIDLTHNTQLIYFQ------A  282 (457)
T ss_dssp             SEEECCSSCCSCC-CC---TTCTTCCEEECTTCCCS-----------------------CCCCTTCTTCCEEE------C
T ss_pred             CEEEeeCCcCCCc-CH---HHCCCCCEEeccCCCCC-----------------------EEECCCCccCCccc------c
Confidence            9999999999864 32   34678999999988776                       67788888777665      2


Q ss_pred             CCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683          325 NFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV  404 (743)
Q Consensus       325 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  404 (743)
                      ..+++|+.|++++|...+.+|.   ..++|+.|++++|             ++|++|++++|++++.   .+..+++|+.
T Consensus       283 ~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~  343 (457)
T 3bz5_A          283 EGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKS  343 (457)
T ss_dssp             TTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSE
T ss_pred             cccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcE
Confidence            3468899999999987666553   3445555555444             7899999999999975   3889999999


Q ss_pred             EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccc
Q 041683          405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINN  471 (743)
Q Consensus       405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  471 (743)
                      |++++|++++         ++.|..|++++|.+.|.     ..+..|+.+++++|+++|.+|..+..
T Consensus       344 L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          344 LSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             EECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             EECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            9999999983         34567778899988865     34567888999999999999876543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.4e-36  Score=329.03  Aligned_cols=346  Identities=20%  Similarity=0.184  Sum_probs=193.6

Q ss_pred             CEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCC
Q 041683          148 NSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRS  227 (743)
Q Consensus       148 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  227 (743)
                      +.++.+++.++ .+|..+.  +++++|+|++|++++ ++...|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45666666666 3454442  466677777776663 3322566666666666666666555444444444444444444


Q ss_pred             CcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEe
Q 041683          228 CHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL  307 (743)
Q Consensus       228 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~l  307 (743)
                      |.+....+..|..+++|++|++++|.+.+..+.                                               
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-----------------------------------------------  122 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDY-----------------------------------------------  122 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTT-----------------------------------------------
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChh-----------------------------------------------
Confidence            444433333333334444444433333221111                                               


Q ss_pred             cCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCcc
Q 041683          308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI  387 (743)
Q Consensus       308 s~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  387 (743)
                                     .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus       123 ---------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          123 ---------------MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             ---------------TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             ---------------HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence                           11224456666666666665555566666666666666666665444455566666666666666


Q ss_pred             ccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCc
Q 041683          388 LSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR  467 (743)
Q Consensus       388 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  467 (743)
                      +.+..+..|..+++|+.|++++|...+.+|...+ ...+|+.|++++|++.+..+..+..+++|                
T Consensus       188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----------------  250 (477)
T 2id5_A          188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYL----------------  250 (477)
T ss_dssp             CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTC----------------
T ss_pred             CcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCcccc----------------
Confidence            6655555566666666666666555444444433 22345555555554443222334444444                


Q ss_pred             cccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCE
Q 041683          468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQS  547 (743)
Q Consensus       468 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  547 (743)
                                                                            +.|++++|.+++..+..|.++++|++
T Consensus       251 ------------------------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (477)
T 2id5_A          251 ------------------------------------------------------RFLNLSYNPISTIEGSMLHELLRLQE  276 (477)
T ss_dssp             ------------------------------------------------------CEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred             ------------------------------------------------------CeeECCCCcCCccChhhccccccCCE
Confidence                                                                  55555555555555556666777777


Q ss_pred             EeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CC
Q 041683          548 LNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DL  626 (743)
Q Consensus       548 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l  626 (743)
                      |+|++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|++.|.++..+.+.......+.++ ..
T Consensus       277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~  356 (477)
T 2id5_A          277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPT  356 (477)
T ss_dssp             EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCB
T ss_pred             EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCce
Confidence            77777777777777777777777777777777766666677777777777777777776554333333333444555 44


Q ss_pred             CCCC
Q 041683          627 CGDP  630 (743)
Q Consensus       627 ~~~~  630 (743)
                      |..|
T Consensus       357 C~~p  360 (477)
T 2id5_A          357 CATP  360 (477)
T ss_dssp             EEES
T ss_pred             eCCc
Confidence            5443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=8.7e-35  Score=317.76  Aligned_cols=345  Identities=24%  Similarity=0.317  Sum_probs=194.0

Q ss_pred             CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCC
Q 041683           16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLT   95 (743)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~   95 (743)
                      .+++|+.|+++++.+..+ + .+..+++|++|+|++|.++ .++.  +.++++|++|+++ ++.+.+..+  +.++++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~  115 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMN-NNQIADITP--LANLTNLT  115 (466)
T ss_dssp             HHHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCCCGG--GTTCTTCC
T ss_pred             HhccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECC-CCccccChh--hcCCCCCC
Confidence            456777888887777553 3 3677778888888888777 4443  7777788888887 556655444  77777777


Q ss_pred             EEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEE
Q 041683           96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD  175 (743)
Q Consensus        96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  175 (743)
                      +|++++|.+....+  +..++     +|++|++++|.+.+. + .+..+++|++|+++ |.+.+..  .+.++++|++|+
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~  183 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLT-----NLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLD  183 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCT-----TCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEE
T ss_pred             EEECCCCCCCCChH--HcCCC-----CCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEE
Confidence            77777777765432  45555     777777777776543 2 36777777777775 4444332  366777777777


Q ss_pred             ccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCc
Q 041683          176 LSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRIS  255 (743)
Q Consensus       176 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  255 (743)
                      +++|.+. .++  .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.
T Consensus       184 l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          184 ISSNKVS-DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             CCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CcCCcCC-CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence            7777766 333  36666777777777776654433  44455566666666655432  23455555555555555554


Q ss_pred             cccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEEC
Q 041683          256 AKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKL  335 (743)
Q Consensus       256 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L  335 (743)
                      +..+   +..+++|+.|++++|.+.+..+                                       +..+++|++|++
T Consensus       257 ~~~~---~~~l~~L~~L~l~~n~l~~~~~---------------------------------------~~~l~~L~~L~L  294 (466)
T 1o6v_A          257 NLAP---LSGLTKLTELKLGANQISNISP---------------------------------------LAGLTALTNLEL  294 (466)
T ss_dssp             CCGG---GTTCTTCSEEECCSSCCCCCGG---------------------------------------GTTCTTCSEEEC
T ss_pred             cchh---hhcCCCCCEEECCCCccCcccc---------------------------------------ccCCCccCeEEc
Confidence            3222   2334445555555444432110                                       112344555555


Q ss_pred             cCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 041683          336 SKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS  415 (743)
Q Consensus       336 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~  415 (743)
                      ++|++.+..+  +..+++|++|++++|++++..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++.+.
T Consensus       295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence            5555543322  4444555555555555543332  34445555555555554433  2344455555555555555433


Q ss_pred             CchhHHhcccCCcEEEccCCcCc
Q 041683          416 IPSWIGERFSILKILNLRSNKFH  438 (743)
Q Consensus       416 ~~~~~~~~l~~L~~L~L~~n~l~  438 (743)
                      .|   ...+++|+.|++++|+++
T Consensus       369 ~~---~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          369 TP---LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             GG---GTTCTTCCEEECCCEEEE
T ss_pred             ch---hhcCCCCCEEeccCCccc
Confidence            33   123445555555555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.9e-35  Score=317.33  Aligned_cols=344  Identities=25%  Similarity=0.333  Sum_probs=248.2

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      +++.|+++++.+.. +| .+..+++|++|++++|.+++..+  +.++++|++|++++|.+.+ ++.  +.++++|++|++
T Consensus        47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L  119 (466)
T 1o6v_A           47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTL  119 (466)
T ss_dssp             TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEEC
T ss_pred             cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEEC
Confidence            67778887777754 33 36677778888888777775433  7777777777777777763 332  666777777777


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      ++|.+....+                          +..+++|++|++++|.+.+ ++.  +..+++|+.|+++ |.+.+
T Consensus       120 ~~n~l~~~~~--------------------------~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~-~~~~~  169 (466)
T 1o6v_A          120 FNNQITDIDP--------------------------LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFG-NQVTD  169 (466)
T ss_dssp             CSSCCCCCGG--------------------------GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEE-ESCCC
T ss_pred             CCCCCCCChH--------------------------HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecC-CcccC
Confidence            7666543321                          4455555555555555543 221  3345556666554 22211


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683          282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH  361 (743)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  361 (743)
                      .                                       ..+..+++|++|++++|.+.+.  ..+..+++|++|++++
T Consensus       170 ~---------------------------------------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~  208 (466)
T 1o6v_A          170 L---------------------------------------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATN  208 (466)
T ss_dssp             C---------------------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred             c---------------------------------------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecC
Confidence            0                                       0123356788888888887643  3477788888888888


Q ss_pred             CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccC
Q 041683          362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF  441 (743)
Q Consensus       362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  441 (743)
                      |.+.+..+  +..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+. +.  +..+++|++|++++|.+.+..
T Consensus       209 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~~~~  281 (466)
T 1o6v_A          209 NQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKLGANQISNIS  281 (466)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCSEEECCSSCCCCCG
T ss_pred             Cccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc-hh--hhcCCCCCEEECCCCccCccc
Confidence            88876544  66788888888888888754  4577888899999999888743 33  346888999999999888654


Q ss_pred             CccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccc
Q 041683          442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLV  521 (743)
Q Consensus       442 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  521 (743)
                      +  +..+++|+.|++++|++.+..+  +..+                                              +.|
T Consensus       282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l----------------------------------------------~~L  311 (466)
T 1o6v_A          282 P--LAGLTALTNLELNENQLEDISP--ISNL----------------------------------------------KNL  311 (466)
T ss_dssp             G--GTTCTTCSEEECCSSCCSCCGG--GGGC----------------------------------------------TTC
T ss_pred             c--ccCCCccCeEEcCCCcccCchh--hcCC----------------------------------------------CCC
Confidence            3  7888899999999998875433  3333                                              346


Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                      +.|++++|++++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|
T Consensus       312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  385 (466)
T 1o6v_A          312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  385 (466)
T ss_dssp             SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred             CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence            899999999987665  78899999999999999864  468899999999999999998877  789999999999999


Q ss_pred             ccccc
Q 041683          602 NLVGK  606 (743)
Q Consensus       602 ~l~~~  606 (743)
                      ++++.
T Consensus       386 ~~~~~  390 (466)
T 1o6v_A          386 AWTNA  390 (466)
T ss_dssp             EEECC
T ss_pred             cccCC
Confidence            99974

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.7e-35  Score=316.85  Aligned_cols=361  Identities=18%  Similarity=0.170  Sum_probs=213.2

Q ss_pred             ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccc
Q 041683           83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP  162 (743)
Q Consensus        83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  162 (743)
                      ..+..++++++|++|++++|.+++. | .++.++     +|++|++++|.+.+. +  +..+++|++|++++|.+++. +
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~-----~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~  101 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLT-----GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D  101 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCT-----TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C
T ss_pred             ccccChhHcCCCCEEEccCCCcccC-h-hhcccC-----CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e
Confidence            3444566677777777777776653 3 345554     677777777776553 2  66667777777777776653 2


Q ss_pred             hhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCC
Q 041683          163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR  242 (743)
Q Consensus       163 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  242 (743)
                        ++++++|++|++++|++++ ++   +..+++|++|++++|.+++.   .+..+++|++|++++|...+..  .+..++
T Consensus       102 --~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~  170 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQT  170 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred             --cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCC
Confidence              6666777777777776663 32   55666666666666665542   2444445555555555322222  233444


Q ss_pred             CCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhcc
Q 041683          243 ELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQ  322 (743)
Q Consensus       243 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~  322 (743)
                      +|++|++++|.+++ +|   +..                                                         
T Consensus       171 ~L~~L~ls~n~l~~-l~---l~~---------------------------------------------------------  189 (457)
T 3bz5_A          171 QLTTLDCSFNKITE-LD---VSQ---------------------------------------------------------  189 (457)
T ss_dssp             TCCEEECCSSCCCC-CC---CTT---------------------------------------------------------
T ss_pred             cCCEEECCCCccce-ec---ccc---------------------------------------------------------
Confidence            44444444444432 22   122                                                         


Q ss_pred             CCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCC
Q 041683          323 GENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSL  402 (743)
Q Consensus       323 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  402 (743)
                          +++|+.|++++|++++.   .+..+++|++|++++|++++ +|  +..+++|++|++++|.+++..   +..+++|
T Consensus       190 ----l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L  256 (457)
T 3bz5_A          190 ----NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKL  256 (457)
T ss_dssp             ----CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTC
T ss_pred             ----CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCC
Confidence                34455555555555543   24555555555555555554 23  455555556666555555432   2344455


Q ss_pred             CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683          403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD  482 (743)
Q Consensus       403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  482 (743)
                      +.|++++|               +|+.|++++|.+.+.+|  +..+++|+.|++++|+..+.+|.....+..+.      
T Consensus       257 ~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~------  313 (457)
T 3bz5_A          257 TTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD------  313 (457)
T ss_dssp             CEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC------
T ss_pred             CEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec------
Confidence            55554443               23344555555444443  34455666666666655555543332222221      


Q ss_pred             hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683          483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN  562 (743)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  562 (743)
                                                      ...++.|++|++++|++++. +  +.++++|+.|++++|++++     
T Consensus       314 --------------------------------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-----  353 (457)
T 3bz5_A          314 --------------------------------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-----  353 (457)
T ss_dssp             --------------------------------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-----
T ss_pred             --------------------------------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-----
Confidence                                            01134478999999999974 3  8889999999999999984     


Q ss_pred             CCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       563 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                         ++.|+.|++++|.++|.     ..+..|+.+++++|+++|.+|..
T Consensus       354 ---l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          354 ---FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             ---CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             ---ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence               35677778999999876     35677889999999999999974

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-34  Score=314.02  Aligned_cols=322  Identities=19%  Similarity=0.212  Sum_probs=210.9

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR  100 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~  100 (743)
                      +.++.++++++.+ |..+  .+++++|+|++|.+++..+. .|.++++|++|+|+ ++.+.+..|.+|.++++|++|+++
T Consensus        14 ~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~   88 (477)
T 2id5_A           14 RAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQD-EFASFPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLR   88 (477)
T ss_dssp             TEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTT-TTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHh-HccCCCCCCEEECC-CCccCEeChhhhhCCccCCEEECC
Confidence            4566666666443 3222  24667777777777633333 66677777777776 556666666667777777777777


Q ss_pred             CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC
Q 041683          101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK  180 (743)
Q Consensus       101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  180 (743)
                      +|.++...+..+..++     +|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus        89 ~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A           89 SNRLKLIPLGVFTGLS-----NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             SSCCCSCCTTSSTTCT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred             CCcCCccCcccccCCC-----CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence            7766654444455555     67777777777777667777777777777777777777667777777777777777777


Q ss_pred             CccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccCh
Q 041683          181 LNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPR  260 (743)
Q Consensus       181 l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  260 (743)
                      ++ .++...+..+++|+.|++++|.+....+..|..+++|+.|++++|...+..+.......+|++|++++|.++ .+|.
T Consensus       164 l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~  241 (477)
T 2id5_A          164 LT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPY  241 (477)
T ss_dssp             CS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCH
T ss_pred             Cc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCH
Confidence            76 455546777777777777777776655555555555555555555444333333333334555555555443 2222


Q ss_pred             hhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcC
Q 041683          261 GFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNF  340 (743)
Q Consensus       261 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  340 (743)
                      ..+.                                                             .+++|++|++++|.+
T Consensus       242 ~~~~-------------------------------------------------------------~l~~L~~L~Ls~n~l  260 (477)
T 2id5_A          242 LAVR-------------------------------------------------------------HLVYLRFLNLSYNPI  260 (477)
T ss_dssp             HHHT-------------------------------------------------------------TCTTCCEEECCSSCC
T ss_pred             HHhc-------------------------------------------------------------CccccCeeECCCCcC
Confidence            2211                                                             245677777777777


Q ss_pred             cccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCccc
Q 041683          341 SGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGS  415 (743)
Q Consensus       341 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~  415 (743)
                      .+..+..|..+++|++|++++|++++..|..|..+++|++|++++|.++++.+..|..+++|++|++++|++...
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          261 STIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             CccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            766666777777788888888887777777777788888888888888777767777778888888888877644

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6e-35  Score=300.80  Aligned_cols=258  Identities=32%  Similarity=0.560  Sum_probs=242.3

Q ss_pred             CCccEEECcCCcCcc--cCCccccCCCCCCEEECCC-CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683          328 NNIEFLKLSKNNFSG--DIPDCWMNWLRLRALNLGH-NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV  404 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  404 (743)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  8899999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCC-CccEEEccCCccccccCccccccccccccCccch
Q 041683          405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLA-FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQ  483 (743)
Q Consensus       405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  483 (743)
                      |++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+..++ +|+.|++++|++.+.+|..+..+.          
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~----------  198 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------  198 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc----------
Confidence            99999999988888776 799999999999999999999999998 999999999999999998877654          


Q ss_pred             hhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCC
Q 041683          484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI  563 (743)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  563 (743)
                                                           |++|++++|.+++..|..|..+++|+.|+|++|.+++.+|. +
T Consensus       199 -------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~  240 (313)
T 1ogq_A          199 -------------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-V  240 (313)
T ss_dssp             -------------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-C
T ss_pred             -------------------------------------ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-c
Confidence                                                 49999999999999999999999999999999999977766 8


Q ss_pred             CCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCCCCCCC
Q 041683          564 GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGDPLSNC  634 (743)
Q Consensus       564 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c  634 (743)
                      ..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|....++.++.+++.+| .+||.|...|
T Consensus       241 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence            8899999999999999999999999999999999999999999999988999999999999 6999988777

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3e-33  Score=298.59  Aligned_cols=332  Identities=19%  Similarity=0.223  Sum_probs=193.5

Q ss_pred             CCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEE
Q 041683          169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLD  248 (743)
Q Consensus       169 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  248 (743)
                      +++++|++++|.++ .+|...+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34444444444443 33333344444444444444444444434444444555555555555555555666667777777


Q ss_pred             ccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCC
Q 041683          249 ISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN  328 (743)
Q Consensus       249 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~  328 (743)
                      +++|.++ .+|...+..+                                                             +
T Consensus       124 L~~n~l~-~l~~~~~~~l-------------------------------------------------------------~  141 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNT-------------------------------------------------------------P  141 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTC-------------------------------------------------------------T
T ss_pred             CCCCccC-cCCHHHhcCC-------------------------------------------------------------C
Confidence            7777665 3444333333                                                             3


Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG  408 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  408 (743)
                      +|++|++++|.+.+..+..|..+++|++|++++|++++.   .+..+++|++|++++|.+++.     ...++|++|+++
T Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~  213 (390)
T 3o6n_A          142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS  213 (390)
T ss_dssp             TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECC
T ss_pred             CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECC
Confidence            444444444444444444455555555555555555532   133445555555555555432     223456666666


Q ss_pred             CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683          409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY  488 (743)
Q Consensus       409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  488 (743)
                      +|.+. .+|..   ..++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..|..+..++.              
T Consensus       214 ~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~--------------  273 (390)
T 3o6n_A          214 HNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR--------------  273 (390)
T ss_dssp             SSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS--------------
T ss_pred             CCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc--------------
Confidence            66665 33332   235566666666666642  35666666777777777666655655555444              


Q ss_pred             ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCC
Q 041683          489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS  568 (743)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  568 (743)
                                                      |++|++++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++
T Consensus       274 --------------------------------L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~  319 (390)
T 3o6n_A          274 --------------------------------LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR  319 (390)
T ss_dssp             --------------------------------CCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             --------------------------------CCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCc
Confidence                                            3667777777764 4555667888999999999988 56667888899


Q ss_pred             ccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCC
Q 041683          569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGD  629 (743)
Q Consensus       569 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~  629 (743)
                      |+.|++++|+++.. |  +..+++|+.|++++|++.+..... .+..+....+.++ ..|+.
T Consensus       320 L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~c~~  377 (390)
T 3o6n_A          320 LENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKI  377 (390)
T ss_dssp             CSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCSCCCT
T ss_pred             CCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHH-HHHHHHhhcccccCceecc
Confidence            99999999999854 3  667889999999999998864322 2334444445555 45554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.6e-32  Score=292.84  Aligned_cols=310  Identities=17%  Similarity=0.192  Sum_probs=151.0

Q ss_pred             CCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCE
Q 041683           17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS   96 (743)
Q Consensus        17 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~   96 (743)
                      ++++++|++++|.+..+.+..|..+++|++|++++|.++ .++...|.++++|++|+++ ++.+.+..|..+.++++|++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG-FNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECC-CCCCCcCCHHHhcCCCCCCE
Confidence            345555555555555544444555555555555555555 2332245555555555555 44454444555555555555


Q ss_pred             EEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEc
Q 041683           97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL  176 (743)
Q Consensus        97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  176 (743)
                      |++++|.++...+..+..++     +|++|++++|.+.+..+..+..+++|++|++++|.+++.   .+..+++|++|++
T Consensus       122 L~L~~n~l~~l~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l  193 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTP-----KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV  193 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred             EECCCCccCcCCHHHhcCCC-----CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence            55555555432222233333     455555555555444444444455555555555544432   1333444445555


Q ss_pred             cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcc
Q 041683          177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISA  256 (743)
Q Consensus       177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  256 (743)
                      ++|.++                         ...     ...+|+.|++++|.+... +.  ...++|+.|++++|.+++
T Consensus       194 ~~n~l~-------------------------~~~-----~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~  240 (390)
T 3o6n_A          194 SYNLLS-------------------------TLA-----IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTD  240 (390)
T ss_dssp             CSSCCS-------------------------EEE-----CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCC
T ss_pred             cccccc-------------------------ccC-----CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCcc
Confidence            444443                         321     122455555555554422 11  123456666666666653


Q ss_pred             ccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECc
Q 041683          257 KIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS  336 (743)
Q Consensus       257 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls  336 (743)
                      .  . .+..+++|++|++++|.+.+..|                                     ..+..+++|++|+++
T Consensus       241 ~--~-~l~~l~~L~~L~Ls~n~l~~~~~-------------------------------------~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          241 T--A-WLLNYPGLVEVDLSYNELEKIMY-------------------------------------HPFVKMQRLERLYIS  280 (390)
T ss_dssp             C--G-GGGGCTTCSEEECCSSCCCEEES-------------------------------------GGGTTCSSCCEEECC
T ss_pred             c--H-HHcCCCCccEEECCCCcCCCcCh-------------------------------------hHccccccCCEEECC
Confidence            2  1 22233444444444443332111                                     111224455555555


Q ss_pred             CCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcc
Q 041683          337 KNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG  414 (743)
Q Consensus       337 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~  414 (743)
                      +|++.+ ++..+..+++|++|++++|++. .+|..+..+++|++|++++|.++...   +..+++|+.|++++|++.+
T Consensus       281 ~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred             CCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence            555553 2333445556666666666665 34444555566666666666655431   4455566666666666553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.2e-32  Score=309.94  Aligned_cols=333  Identities=19%  Similarity=0.228  Sum_probs=209.2

Q ss_pred             CCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEE
Q 041683          169 SNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLD  248 (743)
Q Consensus       169 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  248 (743)
                      .+++.+++++|.+. .+|...+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|+
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            34444444444443 33333344444444444444444444444444444555555555555555555666667777777


Q ss_pred             ccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCC
Q 041683          249 ISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSN  328 (743)
Q Consensus       249 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~  328 (743)
                      +++|.++ .+|..++..                                                             ++
T Consensus       130 L~~n~l~-~l~~~~~~~-------------------------------------------------------------l~  147 (597)
T 3oja_B          130 LERNDLS-SLPRGIFHN-------------------------------------------------------------TP  147 (597)
T ss_dssp             CCSSCCC-CCCTTTTTT-------------------------------------------------------------CT
T ss_pred             eeCCCCC-CCCHHHhcc-------------------------------------------------------------CC
Confidence            7777665 244333232                                                             34


Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG  408 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  408 (743)
                      +|++|++++|.+.+..|..|..+++|++|++++|.+++.   .+..+++|+.|++++|.+++.     ...++|+.|+++
T Consensus       148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls  219 (597)
T 3oja_B          148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS  219 (597)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECC
T ss_pred             CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----cCCchhheeecc
Confidence            455555555555555555566666666666666666543   134456666666666665532     234566677777


Q ss_pred             CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683          409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY  488 (743)
Q Consensus       409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  488 (743)
                      +|.+. .++...   .++|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..|..|..++.|             
T Consensus       220 ~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------  280 (597)
T 3oja_B          220 HNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL-------------  280 (597)
T ss_dssp             SSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC-------------
T ss_pred             CCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC-------------
Confidence            76665 333322   3567777777777764  2456777777777777777777666666655553             


Q ss_pred             ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCC
Q 041683          489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS  568 (743)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  568 (743)
                                                       +.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++
T Consensus       281 ---------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~  325 (597)
T 3oja_B          281 ---------------------------------ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR  325 (597)
T ss_dssp             ---------------------------------CEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT
T ss_pred             ---------------------------------CEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC
Confidence                                             777777777775 4666677899999999999998 67777888999


Q ss_pred             ccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCCC
Q 041683          569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGDP  630 (743)
Q Consensus       569 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~  630 (743)
                      |+.|++++|++++..   +..+++|+.|++++|+++|..+.. .+..+....+.++ ..|+.+
T Consensus       326 L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          326 LENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             CSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred             CCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence            999999999998653   567889999999999999875432 3445555566777 778764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.5e-31  Score=280.76  Aligned_cols=307  Identities=23%  Similarity=0.340  Sum_probs=159.0

Q ss_pred             ccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccc
Q 041683          141 LRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQL  220 (743)
Q Consensus       141 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L  220 (743)
                      +..+++|++|++++|.+... + .+..+++|++|++++|+++ .++.  +..+++|++|++++|.+...           
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~-----------  103 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI-----------  103 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-----------
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc-----------
Confidence            45667788888888877743 3 4777778888888887776 3433  66667777777766655421           


Q ss_pred             cEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCCC
Q 041683          221 TVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL  300 (743)
Q Consensus       221 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l  300 (743)
                                     ..+..+++|++|++++|.+.+ ++.  +..+++|+.|++++|.....++                
T Consensus       104 ---------------~~~~~l~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~~----------------  149 (347)
T 4fmz_A          104 ---------------SALQNLTNLRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDLS----------------  149 (347)
T ss_dssp             ---------------GGGTTCTTCSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCCG----------------
T ss_pred             ---------------hHHcCCCcCCEEECcCCcccC-chh--hccCCceeEEECCCCCCccccc----------------
Confidence                           134555555555555555543 221  2233344444444332211110                


Q ss_pred             CCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcE
Q 041683          301 LGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLS  380 (743)
Q Consensus       301 ~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  380 (743)
                                            .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++
T Consensus       150 ----------------------~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  203 (347)
T 4fmz_A          150 ----------------------PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY  203 (347)
T ss_dssp             ----------------------GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             ----------------------chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccce
Confidence                                  01123445555555554443221  4444555555555555442211  444444555


Q ss_pred             EEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCc
Q 041683          381 LNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNS  460 (743)
Q Consensus       381 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~  460 (743)
                      |++++|.+.+..+  +..+++|++|++++|.+. .++.  +..+++|++|++++|.+.+.  ..+..+++|         
T Consensus       204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L---------  267 (347)
T 4fmz_A          204 FTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL---------  267 (347)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC---------
T ss_pred             eecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCc---------
Confidence            5555444443322  444444444444444444 2222  12344444444444444421  223344444         


Q ss_pred             cccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhc
Q 041683          461 LSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVT  540 (743)
Q Consensus       461 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  540 (743)
                                                                                   ++|++++|++++.  ..+.
T Consensus       268 -------------------------------------------------------------~~L~l~~n~l~~~--~~~~  284 (347)
T 4fmz_A          268 -------------------------------------------------------------KMLNVGSNQISDI--SVLN  284 (347)
T ss_dssp             -------------------------------------------------------------CEEECCSSCCCCC--GGGG
T ss_pred             -------------------------------------------------------------CEEEccCCccCCC--hhhc
Confidence                                                                         5555555555432  2355


Q ss_pred             ccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccc
Q 041683          541 NLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV  604 (743)
Q Consensus       541 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  604 (743)
                      .+++|++|++++|++++..|..++.+++|+.|++++|++++..|  +..+++|++|++++|+++
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            66667777777776666666666666777777777777665544  556677777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.1e-31  Score=279.68  Aligned_cols=196  Identities=23%  Similarity=0.424  Sum_probs=110.2

Q ss_pred             CCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCC
Q 041683           14 LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCK   93 (743)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~   93 (743)
                      +..+++|++|++++|.+..+.  .+..+++|++|++++|.++ .++.  +.++++|++|+++ ++.+++ + .++.++++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~-~n~i~~-~-~~~~~l~~  111 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIG-TNKITD-I-SALQNLTN  111 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCC-C-GGGTTCTT
T ss_pred             chhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEcc-CCcccC-c-hHHcCCCc
Confidence            446666777777777665432  3666777777777777666 4443  6667777777776 444543 2 24666666


Q ss_pred             CCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCE
Q 041683           94 LTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY  173 (743)
Q Consensus        94 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  173 (743)
                      |++|++++|.+....+  +..++     +|++|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|++
T Consensus       112 L~~L~l~~n~i~~~~~--~~~l~-----~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~  181 (347)
T 4fmz_A          112 LRELYLNEDNISDISP--LANLT-----KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYS  181 (347)
T ss_dssp             CSEEECTTSCCCCCGG--GTTCT-----TCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred             CCEEECcCCcccCchh--hccCC-----ceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence            6666666666554222  33333     566666666544333332 5555556666665555553322  555555555


Q ss_pred             EEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCC
Q 041683          174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTR  253 (743)
Q Consensus       174 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  253 (743)
                      |++++|.+. .++.  +..+++|++|+++                        +|.+....+  +..+++|++|++++|.
T Consensus       182 L~l~~n~l~-~~~~--~~~l~~L~~L~l~------------------------~n~l~~~~~--~~~~~~L~~L~l~~n~  232 (347)
T 4fmz_A          182 LSLNYNQIE-DISP--LASLTSLHYFTAY------------------------VNQITDITP--VANMTRLNSLKIGNNK  232 (347)
T ss_dssp             EECTTSCCC-CCGG--GGGCTTCCEEECC------------------------SSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             EEccCCccc-cccc--ccCCCccceeecc------------------------cCCCCCCch--hhcCCcCCEEEccCCc
Confidence            555555554 2222  4444555555544                        444443332  5666777777777777


Q ss_pred             Ccc
Q 041683          254 ISA  256 (743)
Q Consensus       254 i~~  256 (743)
                      +++
T Consensus       233 l~~  235 (347)
T 4fmz_A          233 ITD  235 (347)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-31  Score=302.00  Aligned_cols=308  Identities=16%  Similarity=0.158  Sum_probs=152.0

Q ss_pred             CCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccC
Q 041683           42 NDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN  121 (743)
Q Consensus        42 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~  121 (743)
                      ++++.|++++|.++ .+|...|.++++|++|+|+ ++.+.+..|.+|..+++|++|++++|.+++..+..++.++     
T Consensus        51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----  123 (597)
T 3oja_B           51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-----  123 (597)
T ss_dssp             CCCSEEEESSCEES-EECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----
T ss_pred             CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECC-CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC-----
Confidence            44555555555554 3443344555555555555 3344444444555555555555555555554444444444     


Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      +|++|+|++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++ ++   +..+++|+.|++
T Consensus       124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l  199 (597)
T 3oja_B          124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANV  199 (597)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEEC
T ss_pred             CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhc
Confidence            55555555555554444445555555555555555555555555555555555555555542 21   344555555555


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      ++|.+.+..     .+..|+.|++++|.+....+..   .++|+.|++++|.+++.  . .+..+++|+.|++++|.+.+
T Consensus       200 ~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~-~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          200 SYNLLSTLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             CSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCE
T ss_pred             ccCcccccc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--h-hhccCCCCCEEECCCCccCC
Confidence            555554321     2235566666666554322211   24677777777777541  1 12233344444444443332


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683          282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH  361 (743)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  361 (743)
                      ..|                                     ..+..+++|+.|++++|.+.+. |..+..+++|++|+|++
T Consensus       269 ~~~-------------------------------------~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          269 IMY-------------------------------------HPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             EES-------------------------------------GGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCS
T ss_pred             CCH-------------------------------------HHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCC
Confidence            111                                     1112234455555555555432 33334455555555555


Q ss_pred             CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCc
Q 041683          362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV  413 (743)
Q Consensus       362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~  413 (743)
                      |.++ .+|..+..+++|++|++++|.+++..   +..+++|+.|++++|++.
T Consensus       311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          311 NHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEE
T ss_pred             CCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCC
Confidence            5555 34444455555555555555554331   344455555555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1e-31  Score=276.57  Aligned_cols=232  Identities=26%  Similarity=0.467  Sum_probs=214.7

Q ss_pred             CCCCCccEEECcC-CcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCC
Q 041683          325 NFSNNIEFLKLSK-NNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLE  403 (743)
Q Consensus       325 ~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  403 (743)
                      ..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|+
T Consensus        73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  152 (313)
T 1ogq_A           73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence            3478999999995 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCcCcccCchhHHhccc-CCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683          404 VLDLGENELVGSIPSWIGERFS-ILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD  482 (743)
Q Consensus       404 ~L~Ls~n~i~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  482 (743)
                      +|++++|++.+.+|..+. .++ +|++|++++|++.+..|..+..++ |+.|++++|++.+..|..+..++.        
T Consensus       153 ~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~--------  222 (313)
T 1ogq_A          153 GITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN--------  222 (313)
T ss_dssp             EEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC--------
T ss_pred             eEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC--------
Confidence            999999999989998887 576 999999999999999999999987 999999999999888888877666        


Q ss_pred             hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683          483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN  562 (743)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  562 (743)
                                                            |+.|++++|++++.+|. +..+++|++|+|++|++++.+|..
T Consensus       223 --------------------------------------L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~  263 (313)
T 1ogq_A          223 --------------------------------------TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG  263 (313)
T ss_dssp             --------------------------------------CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred             --------------------------------------CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence                                                  49999999999977665 888999999999999999999999


Q ss_pred             CCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccccc
Q 041683          563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGK  606 (743)
Q Consensus       563 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  606 (743)
                      +..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..+.
T Consensus       264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            999999999999999999999986 8899999999999994443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.2e-33  Score=307.26  Aligned_cols=188  Identities=23%  Similarity=0.209  Sum_probs=101.2

Q ss_pred             CccEEECcCCcCccc----CCccccCCCCCCEEECCCCcCcccC-----CccccCCCCCcEEEccCcccccc----CCcc
Q 041683          329 NIEFLKLSKNNFSGD----IPDCWMNWLRLRALNLGHNNFTGSL-----PMSIGTLSSLLSLNLRNNILSGI----IPTS  395 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~i~~~----~~~~  395 (743)
                      +|++|++++|.+...    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            344445554444432    2334445556666666666555321     11222456666666666666543    3445


Q ss_pred             cCCCCCCCEEeCCCCcCcccCchhHHh----cccCCcEEEccCCcCccc----CCccccCCCCccEEEccCCccccccCc
Q 041683          396 FKNFSSLEVLDLGENELVGSIPSWIGE----RFSILKILNLRSNKFHGD----FPIQLCGLAFLQILDVASNSLSGTIPR  467 (743)
Q Consensus       396 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~  467 (743)
                      +..+++|++|++++|.+.+..+..+..    ..++|++|++++|.+++.    ++..+..+++|++|++++|++.+..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            556677777777777765433333322    124677777777776643    344455667777777777766643333


Q ss_pred             cccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcc----cCchhhcccC
Q 041683          468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG----EIPVEVTNLQ  543 (743)
Q Consensus       468 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~  543 (743)
                      .+...-.                                         ...+.|++|++++|++++    .+|..+..++
T Consensus       360 ~l~~~l~-----------------------------------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~  398 (461)
T 1z7x_W          360 ELCQGLG-----------------------------------------QPGSVLRVLWLADCDVSDSSCSSLAATLLANH  398 (461)
T ss_dssp             HHHHHHT-----------------------------------------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHc-----------------------------------------CCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence            2221000                                         002235666666666664    4555666666


Q ss_pred             CCCEEeCCCCcCcc
Q 041683          544 GLQSLNLSHNLLTG  557 (743)
Q Consensus       544 ~L~~L~Ls~N~l~~  557 (743)
                      +|++|++++|++++
T Consensus       399 ~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          399 SLRELDLSNNCLGD  412 (461)
T ss_dssp             CCCEEECCSSSCCH
T ss_pred             CccEEECCCCCCCH
Confidence            66666666666653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=9.4e-34  Score=310.12  Aligned_cols=384  Identities=18%  Similarity=0.127  Sum_probs=221.2

Q ss_pred             CccEEEccCCcCcccchhh-ccCCCCCCEEECcCccCccc----cchhccCCCCCCEEEccCCCCccccChhhhcCCC--
Q 041683          122 ELESLRLGSSQIFGHLTNQ-LRRFKRLNSLDLSNTILDGS----IPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLT--  194 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~--  194 (743)
                      +|++|++++|++....... +..+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+......+..++  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4556666666554333222 45566666666666666532    3445556666666666666665322221222233  


Q ss_pred             --CCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhh----ccc
Q 041683          195 --KLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNS----IYQ  268 (743)
Q Consensus       195 --~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~----l~~  268 (743)
                        +|++|++++|.+.....                    ..++..+..+++|++|++++|.+++..+..+...    .++
T Consensus        84 ~~~L~~L~L~~n~i~~~~~--------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  143 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGC--------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR  143 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGH--------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCceeEEEccCCCCCHHHH--------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCc
Confidence              34444444443321000                    1234555666666666666666654333333222    234


Q ss_pred             CceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccc
Q 041683          269 YFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCW  348 (743)
Q Consensus       269 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  348 (743)
                      |++|++++|.+++.                                 ....++..+..+++|++|++++|.+....+..+
T Consensus       144 L~~L~L~~n~l~~~---------------------------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  190 (461)
T 1z7x_W          144 LEKLQLEYCSLSAA---------------------------------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVL  190 (461)
T ss_dssp             CCEEECTTSCCBGG---------------------------------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH
T ss_pred             ceEEECCCCCCCHH---------------------------------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHH
Confidence            55555555554321                                 111112222235678888888887765433333


Q ss_pred             c-----CCCCCCEEECCCCcCccc----CCccccCCCCCcEEEccCccccccC-----CcccCCCCCCCEEeCCCCcCcc
Q 041683          349 M-----NWLRLRALNLGHNNFTGS----LPMSIGTLSSLLSLNLRNNILSGII-----PTSFKNFSSLEVLDLGENELVG  414 (743)
Q Consensus       349 ~-----~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~Ls~n~i~~  414 (743)
                      .     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++
T Consensus       191 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~  270 (461)
T 1z7x_W          191 CQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITA  270 (461)
T ss_dssp             HHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence            2     356888888888888753    4566677888888888888876532     2233457888888888888874


Q ss_pred             c----CchhHHhcccCCcEEEccCCcCcccCCccccC-----CCCccEEEccCCcccccc----CccccccccccccCcc
Q 041683          415 S----IPSWIGERFSILKILNLRSNKFHGDFPIQLCG-----LAFLQILDVASNSLSGTI----PRCINNLSAMAITDSY  481 (743)
Q Consensus       415 ~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~~~~~  481 (743)
                      .    ++..+. .+++|++|++++|.+.+..+..+..     .++|+.|++++|.+++..    +..+..          
T Consensus       271 ~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~----------  339 (461)
T 1z7x_W          271 KGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ----------  339 (461)
T ss_dssp             HHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh----------
Confidence            3    444443 5778888888888876443333322     257888888888776432    222222          


Q ss_pred             chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcc-----cCCCCEEeCCCCcCc
Q 041683          482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTN-----LQGLQSLNLSHNLLT  556 (743)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~  556 (743)
                                                          ++.|++|++++|.+++..+..+..     .++|++|+|++|.++
T Consensus       340 ------------------------------------~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          340 ------------------------------------NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             ------------------------------------CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             ------------------------------------CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence                                                233577888888777655544432     567888888888877


Q ss_pred             c----cCCCCCCCCCCccEEECcCCcCCCCCCcccc-----CcCCCCeeeCcCCcccc
Q 041683          557 G----RIPDNIGVMRSIESLDLSANQLSGQIPQSMS-----NLSFLNHLNLSNNNLVG  605 (743)
Q Consensus       557 ~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-----~l~~L~~L~ls~N~l~~  605 (743)
                      +    .+|..+..+++|++|++++|++++.....+.     ....|+.|++.++.+..
T Consensus       384 ~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             hhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            5    5666677777888888888877643211111     12356666666665543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=8e-30  Score=265.52  Aligned_cols=199  Identities=20%  Similarity=0.232  Sum_probs=140.9

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCcccc--ccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683          352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILS--GIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI  429 (743)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~  429 (743)
                      ++|++|++++|++.+..+..|..+++|++|++++|.++  +..+..+..+ +|++|++++|.+. .+|..+   .++|++
T Consensus       123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~---~~~L~~  197 (332)
T 2ft3_A          123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDL---PETLNE  197 (332)
T ss_dssp             TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSS---CSSCSC
T ss_pred             ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCccc---cCCCCE
Confidence            45555555555555444444555556666666666554  2445555555 6777777777766 455443   256777


Q ss_pred             EEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeec
Q 041683          430 LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG  509 (743)
Q Consensus       430 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (743)
                      |++++|.+.+..+..+..+++|+.|++++|++.+..+..+..++.                                   
T Consensus       198 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------------------------------  242 (332)
T 2ft3_A          198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-----------------------------------  242 (332)
T ss_dssp             CBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-----------------------------------
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-----------------------------------
Confidence            888888877766677888888888888888887766666665554                                   


Q ss_pred             eeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC------CCCccEEECcCCcCC--C
Q 041683          510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV------MRSIESLDLSANQLS--G  581 (743)
Q Consensus       510 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~--~  581 (743)
                                 |++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      ..+|+.|++++|++.  +
T Consensus       243 -----------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~  310 (332)
T 2ft3_A          243 -----------LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE  310 (332)
T ss_dssp             -----------CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred             -----------CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence                       488888888888 67777888999999999999999777776655      367899999999987  6


Q ss_pred             CCCccccCcCCCCeeeCcCCc
Q 041683          582 QIPQSMSNLSFLNHLNLSNNN  602 (743)
Q Consensus       582 ~~p~~l~~l~~L~~L~ls~N~  602 (743)
                      ..|..|..+++|+.+++++|+
T Consensus       311 ~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          311 VQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCGGGGTTBCCSTTEEC----
T ss_pred             cCcccccccchhhhhhccccc
Confidence            778889999999999999885

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-29  Score=263.56  Aligned_cols=200  Identities=20%  Similarity=0.255  Sum_probs=121.9

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccc--cCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683          352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSG--IIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI  429 (743)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~  429 (743)
                      ++|++|++++|.+++..+..|.++++|++|++++|.+..  ..+..+..+++|++|++++|.+. .+|..+   .++|++
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~  196 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTE  196 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSE
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCE
Confidence            344444444444444434444445555555555554432  34445555566666666666655 444432   256666


Q ss_pred             EEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeec
Q 041683          430 LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG  509 (743)
Q Consensus       430 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (743)
                      |++++|++.+..+..+..+++|+.|++++|++.+..+..+..++.                                   
T Consensus       197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-----------------------------------  241 (330)
T 1xku_A          197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-----------------------------------  241 (330)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTT-----------------------------------
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCC-----------------------------------
Confidence            666666666666666667777777777777776555555544444                                   


Q ss_pred             eeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC------CCCccEEECcCCcCCC--
Q 041683          510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV------MRSIESLDLSANQLSG--  581 (743)
Q Consensus       510 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--  581 (743)
                                 |++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .++|+.|++++|.+..  
T Consensus       242 -----------L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~  309 (330)
T 1xku_A          242 -----------LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE  309 (330)
T ss_dssp             -----------CCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred             -----------CCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence                       367777777776 56667777788888888888887666665643      3677888888888763  


Q ss_pred             CCCccccCcCCCCeeeCcCCc
Q 041683          582 QIPQSMSNLSFLNHLNLSNNN  602 (743)
Q Consensus       582 ~~p~~l~~l~~L~~L~ls~N~  602 (743)
                      ..|..|..+..++.+++++|+
T Consensus       310 i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          310 IQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCGGGGTTCCCGGGEEC----
T ss_pred             cCccccccccceeEEEecccC
Confidence            456677778888888888774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=2.1e-29  Score=262.40  Aligned_cols=218  Identities=18%  Similarity=0.215  Sum_probs=127.2

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683           19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS   98 (743)
Q Consensus        19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~   98 (743)
                      ++++++++++.+..+ |..+  .++|++|++++|.++ .++...|.++++|++|+++ ++.+++..|.+|.++++|++|+
T Consensus        34 ~l~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAV-PKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC-SSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcccc-CCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECC-CCccCccCHhHhhCcCCCCEEE
Confidence            577777777777543 3333  257777777777777 3433367777777777777 5566666677777777777777


Q ss_pred             ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcc--ccchhccCCCCCCEEEc
Q 041683           99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG--SIPFSLGQISNLEYLDL  176 (743)
Q Consensus        99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L  176 (743)
                      +++|.++. +|..+.  +     +|++|++++|.+....+..|..+++|++|++++|.++.  ..+..+..+ +|++|++
T Consensus       109 L~~n~l~~-l~~~~~--~-----~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l  179 (332)
T 2ft3_A          109 ISKNHLVE-IPPNLP--S-----SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI  179 (332)
T ss_dssp             CCSSCCCS-CCSSCC--T-----TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred             CCCCcCCc-cCcccc--c-----cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence            77777653 333222  2     67777777777766655666677777777777776642  445556555 6666677


Q ss_pred             cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 041683          177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI  254 (743)
Q Consensus       177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  254 (743)
                      ++|+++ .+|.. +  .++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.++..+++|++|++++|.+
T Consensus       180 ~~n~l~-~l~~~-~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          180 SEAKLT-GIPKD-L--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL  253 (332)
T ss_dssp             CSSBCS-SCCSS-S--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC
T ss_pred             cCCCCC-ccCcc-c--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC
Confidence            666665 34431 1  14555555555555444434444444444444444444433333344444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.3e-29  Score=259.16  Aligned_cols=197  Identities=19%  Similarity=0.273  Sum_probs=124.8

Q ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEE
Q 041683           19 SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFS   98 (743)
Q Consensus        19 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~   98 (743)
                      ++++++++++.+..+ |..+.  ++|++|++++|.++ .++...|.++++|++|+++ ++.+.+..|.+|.++++|++|+
T Consensus        32 ~l~~l~~~~~~l~~l-p~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLGLEKV-PKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSCCCSC-CCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCCcccc-CccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECC-CCcCCeeCHHHhcCCCCCCEEE
Confidence            677778877777543 33332  57777888888777 4444367777778888887 5567666677777777777777


Q ss_pred             ccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCcc--ccchhccCCCCCCEEEc
Q 041683           99 MRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG--SIPFSLGQISNLEYLDL  176 (743)
Q Consensus        99 L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L  176 (743)
                      +++|.++. +|..+.  +     +|++|++++|.+.+..+..+.++++|++|++++|.++.  ..+..|.++++|++|++
T Consensus       107 Ls~n~l~~-l~~~~~--~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          107 LSKNQLKE-LPEKMP--K-----TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             CCSSCCSB-CCSSCC--T-----TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             CCCCcCCc-cChhhc--c-----cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence            77777653 332221  2     67777777777766666666777777777777776643  44556666666677766


Q ss_pred             cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcc
Q 041683          177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISA  256 (743)
Q Consensus       177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  256 (743)
                      ++|.++ .++...   .++|++|                        ++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       179 ~~n~l~-~l~~~~---~~~L~~L------------------------~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  230 (330)
T 1xku_A          179 ADTNIT-TIPQGL---PPSLTEL------------------------HLDGNKITKVDAASLKGLNNLAKLGLSFNSISA  230 (330)
T ss_dssp             CSSCCC-SCCSSC---CTTCSEE------------------------ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred             CCCccc-cCCccc---cccCCEE------------------------ECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence            666665 344311   1444444                        444555444445556666666666666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5e-30  Score=289.94  Aligned_cols=236  Identities=11%  Similarity=-0.000  Sum_probs=123.6

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCC-ccccCCCCCcEEEccCccccccCCcccCCCCCCCEE
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLP-MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL  405 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  405 (743)
                      +++|+.|+++++... .+|..+..+++|++|++++|.+++... ..+..+++|++|+++++......+..+..+++|++|
T Consensus       269 ~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence            455666666654322 344555566666666666666543222 224556667777666332222222333456667777


Q ss_pred             eCCC-----------CcCcccCchhHHhcccCCcEEEccCCcCcccCCccccC-CCCccEEEcc----CCccccccCc-c
Q 041683          406 DLGE-----------NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCG-LAFLQILDVA----SNSLSGTIPR-C  468 (743)
Q Consensus       406 ~Ls~-----------n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~~~~p~-~  468 (743)
                      ++++           |.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++...+ .
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~  427 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG  427 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence            7762           44443322333335666777777666666544444443 6667777775    3444421100 0


Q ss_pred             ccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCc--CcccCchhhc-ccCCC
Q 041683          469 INNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNI--FSGEIPVEVT-NLQGL  545 (743)
Q Consensus       469 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L  545 (743)
                      +..                                          ....+++|+.|++++|.  +++..+..+. .+++|
T Consensus       428 ~~~------------------------------------------~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L  465 (592)
T 3ogk_B          428 VRS------------------------------------------LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV  465 (592)
T ss_dssp             HHH------------------------------------------HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred             HHH------------------------------------------HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence            000                                          01113345666665433  4544444443 36667


Q ss_pred             CEEeCCCCcCcc-cCCCCCCCCCCccEEECcCCcCCCC-CCccccCcCCCCeeeCcCCcccc
Q 041683          546 QSLNLSHNLLTG-RIPDNIGVMRSIESLDLSANQLSGQ-IPQSMSNLSFLNHLNLSNNNLVG  605 (743)
Q Consensus       546 ~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~~  605 (743)
                      ++|+|++|++++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++.
T Consensus       466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            777777776664 2333345566777777777776533 23333456677777777776654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.4e-27  Score=259.51  Aligned_cols=234  Identities=25%  Similarity=0.264  Sum_probs=210.2

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      .+++++|++++|++.+..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.++.+.+..|..+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            36899999999999998899999999999999999999988889999999999999999999988888899999999999


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCC-cCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSN-KFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV  485 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  485 (743)
                      +++|++. .++...+..+++|++|++++| .+....+..|.++++|++|++++|++.+. | .+..              
T Consensus       154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~--------------  216 (452)
T 3zyi_A          154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTP--------------  216 (452)
T ss_dssp             CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTT--------------
T ss_pred             CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccc--------------
Confidence            9999998 667666668999999999995 55544455799999999999999999843 3 2333              


Q ss_pred             hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683          486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV  565 (743)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  565 (743)
                                                      +++|++|++++|++++..|..|.++++|+.|+|++|++++..|..|..
T Consensus       217 --------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  264 (452)
T 3zyi_A          217 --------------------------------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG  264 (452)
T ss_dssp             --------------------------------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             --------------------------------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcC
Confidence                                            334699999999999999999999999999999999999999999999


Q ss_pred             CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683          566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  609 (743)
                      +++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+.-
T Consensus       265 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          265 LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             CCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            99999999999999988888899999999999999999987653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=5.3e-28  Score=248.80  Aligned_cols=236  Identities=23%  Similarity=0.244  Sum_probs=206.8

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCccc--CCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS--LPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV  404 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  404 (743)
                      .+++++|++++|++....+..|..+++|++|++++|.++..  .+..+..+++|++|++++|.+.. .|..+..+++|++
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~  105 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH  105 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCE
Confidence            36899999999999976667789999999999999999843  35677789999999999999985 5667899999999


Q ss_pred             EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc-ccCccccccccccccCccch
Q 041683          405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG-TIPRCINNLSAMAITDSYDQ  483 (743)
Q Consensus       405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~  483 (743)
                      |++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..++.         
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~---------  176 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN---------  176 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT---------
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC---------
Confidence            99999999843332344578999999999999998888889999999999999999986 56777766655         


Q ss_pred             hhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCC
Q 041683          484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI  563 (743)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  563 (743)
                                                           |++|++++|++++..|..+..+++|++|+|++|++++..+..+
T Consensus       177 -------------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  219 (306)
T 2z66_A          177 -------------------------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY  219 (306)
T ss_dssp             -------------------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred             -------------------------------------CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence                                                 5999999999999889999999999999999999998777789


Q ss_pred             CCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCcccccCCC
Q 041683          564 GVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       564 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~  609 (743)
                      ..+++|+.|++++|++++..|..+..+ ++|++|++++|+++|.++.
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~  266 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  266 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence            999999999999999999999999988 4999999999999987653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.1e-27  Score=257.19  Aligned_cols=234  Identities=24%  Similarity=0.252  Sum_probs=209.4

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      .++++.|++++|++.+..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.++.+.+..|..+++|++|+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            36799999999999988889999999999999999999988888999999999999999999988888899999999999


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCC-cCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSN-KFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV  485 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  485 (743)
                      +++|.+. .++...+..+++|++|++++| .+....+..|.++++|++|++++|.+. .+|. +..              
T Consensus       143 L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~--------------  205 (440)
T 3zyj_A          143 LRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTP--------------  205 (440)
T ss_dssp             CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTT--------------
T ss_pred             CCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCC--------------
Confidence            9999998 666656668999999999995 455445557999999999999999998 3342 333              


Q ss_pred             hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683          486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV  565 (743)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  565 (743)
                                                      +++|++|++++|++++..|..|.++++|++|+|++|++++..+..|..
T Consensus       206 --------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  253 (440)
T 3zyj_A          206 --------------------------------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN  253 (440)
T ss_dssp             --------------------------------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTT
T ss_pred             --------------------------------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcC
Confidence                                            334699999999999999999999999999999999999999999999


Q ss_pred             CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683          566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  609 (743)
                      +++|+.|+|++|++++..+..|..+++|+.|+|++|++.|.+.-
T Consensus       254 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          254 LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            99999999999999988888899999999999999999987653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.4e-29  Score=286.28  Aligned_cols=204  Identities=12%  Similarity=0.012  Sum_probs=114.3

Q ss_pred             CCCccEEECcCCcCc-ccCCccccCCCCCCEEECCC-----------CcCccc-CCccccCCCCCcEEEccCccccccCC
Q 041683          327 SNNIEFLKLSKNNFS-GDIPDCWMNWLRLRALNLGH-----------NNFTGS-LPMSIGTLSSLLSLNLRNNILSGIIP  393 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~-----------n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~  393 (743)
                      +++|++|+++ +.+. ..++..+..+++|++|++++           |.+++. .+.....+++|++|+++.|.+++..+
T Consensus       317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~  395 (592)
T 3ogk_B          317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL  395 (592)
T ss_dssp             CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred             CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence            4556666665 2222 22223334556666666662           344422 11123346677777776666665444


Q ss_pred             cccCC-CCCCCEEeCC----CCcCccc-----CchhHHhcccCCcEEEccCCc--CcccCCccc-cCCCCccEEEccCCc
Q 041683          394 TSFKN-FSSLEVLDLG----ENELVGS-----IPSWIGERFSILKILNLRSNK--FHGDFPIQL-CGLAFLQILDVASNS  460 (743)
Q Consensus       394 ~~~~~-l~~L~~L~Ls----~n~i~~~-----~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~Ls~N~  460 (743)
                      ..+.. +++|+.|+++    .|.+++.     ++. +...+++|++|++++|.  +++.....+ ..+++|++|++++|+
T Consensus       396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~  474 (592)
T 3ogk_B          396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG  474 (592)
T ss_dssp             HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred             HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence            44443 6677777775    4555532     222 23357777777776543  443333333 236778888888777


Q ss_pred             cccc-cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCccc-Cchh
Q 041683          461 LSGT-IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE-IPVE  538 (743)
Q Consensus       461 l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~  538 (743)
                      +++. ++..+..                                              +++|++|++++|.+++. ++..
T Consensus       475 l~~~~~~~~~~~----------------------------------------------~~~L~~L~l~~n~l~~~~~~~~  508 (592)
T 3ogk_B          475 ESDEGLMEFSRG----------------------------------------------CPNLQKLEMRGCCFSERAIAAA  508 (592)
T ss_dssp             SSHHHHHHHHTC----------------------------------------------CTTCCEEEEESCCCBHHHHHHH
T ss_pred             CCHHHHHHHHhc----------------------------------------------CcccCeeeccCCCCcHHHHHHH
Confidence            6642 2222222                                              23357888888887654 3344


Q ss_pred             hcccCCCCEEeCCCCcCcccCCCCC-CCCCCccEEECcCCc
Q 041683          539 VTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQ  578 (743)
Q Consensus       539 ~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~  578 (743)
                      +..+++|++|+|++|++++.....+ ..++.+....+..++
T Consensus       509 ~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~~  549 (592)
T 3ogk_B          509 VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRR  549 (592)
T ss_dssp             HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC-
T ss_pred             HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCcc
Confidence            5678899999999999875533333 346767666666553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=7.7e-28  Score=244.75  Aligned_cols=244  Identities=21%  Similarity=0.185  Sum_probs=180.1

Q ss_pred             cEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683          331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN  410 (743)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n  410 (743)
                      +.++.+++.+.. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            567777777763 34322  357778888888777666667777778888888888777777777777888888888888


Q ss_pred             c-CcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhc
Q 041683          411 E-LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYS  489 (743)
Q Consensus       411 ~-i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  489 (743)
                      . +. .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|++.+..+..+..++.               
T Consensus        91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------  154 (285)
T 1ozn_A           91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN---------------  154 (285)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred             CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC---------------
Confidence            6 55 443333346778888888888887766777778888888888888887655555555554               


Q ss_pred             cccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCc
Q 041683          490 SLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSI  569 (743)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  569 (743)
                                                     |++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|
T Consensus       155 -------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  203 (285)
T 1ozn_A          155 -------------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (285)
T ss_dssp             -------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             -------------------------------ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccc
Confidence                                           4788888888887666678888899999999999888888888888999


Q ss_pred             cEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC
Q 041683          570 ESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN  624 (743)
Q Consensus       570 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n  624 (743)
                      +.|++++|++++..+..+..+++|+.|++++|++.+.++.......++......+
T Consensus       204 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~  258 (285)
T 1ozn_A          204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSS  258 (285)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEEC
T ss_pred             cEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccC
Confidence            9999999999877667788888999999999998887765433333333333333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.8e-28  Score=254.41  Aligned_cols=259  Identities=20%  Similarity=0.216  Sum_probs=151.0

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  407 (743)
                      ++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            35666666666666555555666666666666666666555555666666666666666666544444566666666666


Q ss_pred             CCCcCcccCch-hHHhcccCCcEEEccCC-cCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683          408 GENELVGSIPS-WIGERFSILKILNLRSN-KFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV  485 (743)
Q Consensus       408 s~n~i~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  485 (743)
                      ++|++. .+|. ..+..+++|++|++++| .+.+..+..|.++++|++|++++|++.+..|..+..++.|+..+..... 
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-  209 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-  209 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-
T ss_pred             CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-
Confidence            666665 4443 23334566666666665 3444444556666666666666666665555555554443211000000 


Q ss_pred             hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhh---cccCCCCEEeCCCCcCcc----c
Q 041683          486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV---TNLQGLQSLNLSHNLLTG----R  558 (743)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~----~  558 (743)
                                           ...........++.|+.|++++|++++..+..+   ...+.++.++|+++.+++    .
T Consensus       210 ---------------------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          210 ---------------------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             ---------------------STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             ---------------------cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence                                 000000011124456777777777776544333   234566777777777664    3


Q ss_pred             CCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683          559 IPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       559 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  609 (743)
                      +|+.+..+++|++|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            566677888888999999988844334468888888999999988888774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=6.5e-28  Score=253.36  Aligned_cols=271  Identities=19%  Similarity=0.213  Sum_probs=227.5

Q ss_pred             CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683            2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG   81 (743)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~   81 (743)
                      ++|+++ .+|..+.  ++|++|++++|+++++.+..|.++++|++|++++|.+++..+. .|.++++|++|+++ +|.++
T Consensus        39 ~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls-~n~l~  113 (353)
T 2z80_A           39 SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLS-YNYLS  113 (353)
T ss_dssp             CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECC-SSCCS
T ss_pred             CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECC-CCcCC
Confidence            567777 4566554  5899999999999988888999999999999999999854444 89999999999999 77787


Q ss_pred             cccchhccCCCCCCEEEccCCcCcccch-hhhhcccccccCCccEEEccCC-cCcccchhhccCCCCCCEEECcCccCcc
Q 041683           82 GKIPTSFGKLCKLTSFSMRFTKLSQDIS-EILGIFSACVANELESLRLGSS-QIFGHLTNQLRRFKRLNSLDLSNTILDG  159 (743)
Q Consensus        82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~  159 (743)
                      +..+..+.++++|++|++++|.+....+ ..+..++     +|++|++++| .+....+..+..+++|++|++++|.+++
T Consensus       114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~-----~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT-----KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCT-----TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCC-----CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            7666679999999999999999886433 3566676     9999999999 4666677889999999999999999998


Q ss_pred             ccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCC---CCccccEEEcCCCcCCC----
Q 041683          160 SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWV---PPFQLTVLELRSCHLGP----  232 (743)
Q Consensus       160 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~n~l~~----  232 (743)
                      ..|..+.++++|++|++++|++. .++...+..+++|++|++++|.+.+.....+.   ....++.++++++.+.+    
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             cCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence            88999999999999999999997 66665677899999999999998765544332   34568888999888865    


Q ss_pred             CcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCC
Q 041683          233 RFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIP  284 (743)
Q Consensus       233 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  284 (743)
                      .+|.++..+++|+.|++++|+++ .+|..++..+++|++|++++|++.+..|
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            36778899999999999999997 6888877888999999999999886544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.8e-27  Score=246.39  Aligned_cols=227  Identities=18%  Similarity=0.246  Sum_probs=180.0

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            367899999999998 66777888999999999999998 78888889999999999999988 6678888999999999


Q ss_pred             CCCCcCcccCchhHH--------hcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccccccccccc
Q 041683          407 LGENELVGSIPSWIG--------ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAIT  478 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~  478 (743)
                      +++|.+.+.+|..+.        ..+++|++|++++|+++ .+|..+..+++|++|++++|++.+ +|..+..++.    
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~----  230 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK----  230 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT----
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC----
Confidence            999888778887653        13777888888888877 667777778888888888888774 4444554444    


Q ss_pred             CccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCccc
Q 041683          479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR  558 (743)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  558 (743)
                                                                |++|++++|.+.+.+|..+.++++|++|+|++|.+.+.
T Consensus       231 ------------------------------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          231 ------------------------------------------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             ------------------------------------------CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB
T ss_pred             ------------------------------------------CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh
Confidence                                                      47788888777777777777788888888888777777


Q ss_pred             CCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccc
Q 041683          559 IPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV  604 (743)
Q Consensus       559 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  604 (743)
                      +|..+..+++|+.|++++|++.+.+|+.+..+++|+.+++..|.+.
T Consensus       269 ~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            7777777888888888888877778887888888888877766553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=6.5e-27  Score=240.65  Aligned_cols=271  Identities=21%  Similarity=0.225  Sum_probs=209.4

Q ss_pred             CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccc--cCcccccCCCCCCEEEcCCCCc
Q 041683            2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGN--VSSLGLENLTSIKRLYLSENDE   79 (743)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~l~~L~~L~Ls~~~~   79 (743)
                      ++++++ .+|..+.  ++|++|+|++|++..+.+..|.++++|++|+|++|.++..  .+. .+..+++|++|+++ ++.
T Consensus        15 ~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~~~L~~L~Ls-~n~   89 (306)
T 2z66_A           15 NSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ-SDFGTTSLKYLDLS-FNG   89 (306)
T ss_dssp             CSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH-HHHSCSCCCEEECC-SCS
T ss_pred             CCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc-ccccccccCEEECC-CCc
Confidence            456666 4555443  6899999999999877777789999999999999988722  234 56788999999999 556


Q ss_pred             CCcccchhccCCCCCCEEEccCCcCcccch-hhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCc
Q 041683           80 LGGKIPTSFGKLCKLTSFSMRFTKLSQDIS-EILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILD  158 (743)
Q Consensus        80 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~  158 (743)
                      +. .+|..+.++++|++|++++|.+....+ ..+..++     +|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus        90 i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  163 (306)
T 2z66_A           90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-----NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  163 (306)
T ss_dssp             EE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT-----TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred             cc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc-----CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence            65 467778889999999999998876544 4566666     8999999999998888888889999999999999988


Q ss_pred             c-ccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchh
Q 041683          159 G-SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLW  237 (743)
Q Consensus       159 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  237 (743)
                      + ..|..+..+++|++|++++|++++..+. .+..+++|++|++++|.+....+..+..+++|+.|++++|++.+..+..
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence            6 5778888899999999999998854444 6888899999999999988776667788888999999999988888888


Q ss_pred             hcCCC-CCCEEEccCCCCccccC-hhhhhhcccCceEecccCccccCCC
Q 041683          238 LQSQR-ELNDLDISSTRISAKIP-RGFWNSIYQYFYLNISGNQIYGGIP  284 (743)
Q Consensus       238 l~~l~-~L~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~  284 (743)
                      +..++ +|+.|++++|.++...+ .++...+...+.+....+.+....|
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p  291 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP  291 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred             HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence            88874 89999999998875433 2333334444445555555444333

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.7e-27  Score=239.75  Aligned_cols=236  Identities=19%  Similarity=0.212  Sum_probs=206.6

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCcc-ccccCCcccCCCCCCCEE
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI-LSGIIPTSFKNFSSLEVL  405 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L  405 (743)
                      .+++++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4689999999999998888889999999999999999998889999999999999999997 887778899999999999


Q ss_pred             eCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683          406 DLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV  485 (743)
Q Consensus       406 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  485 (743)
                      ++++|.+.+..+..+ ..+++|++|++++|++.+..+..|..+++|++|++++|++.+..+..+..++.           
T Consensus       111 ~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-----------  178 (285)
T 1ozn_A          111 HLDRCGLQELGPGLF-RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-----------  178 (285)
T ss_dssp             ECTTSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-----------
T ss_pred             ECCCCcCCEECHhHh-hCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc-----------
Confidence            999999985445444 47999999999999999777778999999999999999998766666766655           


Q ss_pred             hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683          486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV  565 (743)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  565 (743)
                                                         |+.|++++|++++..|..|.++++|++|++++|++++..++.+..
T Consensus       179 -----------------------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  223 (285)
T 1ozn_A          179 -----------------------------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (285)
T ss_dssp             -----------------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             -----------------------------------cCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence                                               599999999999999999999999999999999999777777999


Q ss_pred             CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                      +++|+.|++++|++....+.. .-...++.+..+.+.+.|..|..
T Consensus       224 l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          224 LRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             CcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            999999999999998654421 22345667778899999999874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.3e-26  Score=239.95  Aligned_cols=223  Identities=22%  Similarity=0.296  Sum_probs=199.0

Q ss_pred             CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683          350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI  429 (743)
Q Consensus       350 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~  429 (743)
                      ..++++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+. .+++|++
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCE
Confidence            3478999999999999 77888888999999999999999 78889999999999999999998 8898776 7999999


Q ss_pred             EEccCCcCcccCCccccC---------CCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccc
Q 041683          430 LNLRSNKFHGDFPIQLCG---------LAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIF  500 (743)
Q Consensus       430 L~L~~n~l~~~~~~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~  500 (743)
                      |++++|++.+.+|..+..         +++|++|++++|++. .+|..+..++.                          
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~--------------------------  207 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN--------------------------  207 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT--------------------------
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC--------------------------
Confidence            999999988888887654         999999999999998 77877776665                          


Q ss_pred             cccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683          501 EDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS  580 (743)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (743)
                                          |++|++++|++++ +|..+..+++|++|+|++|.+.+.+|..++.+++|+.|++++|++.
T Consensus       208 --------------------L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~  266 (328)
T 4fcg_A          208 --------------------LKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL  266 (328)
T ss_dssp             --------------------CCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred             --------------------CCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence                                4999999999995 6667999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCcCCCCeeeCcCCcccccCCCC-cccCCCCCccccCC
Q 041683          581 GQIPQSMSNLSFLNHLNLSNNNLVGKIPSS-TQLQSFGASSFAGN  624 (743)
Q Consensus       581 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~l~~~~~~~n  624 (743)
                      +.+|..+..+++|++|+|++|++.+.+|.. ..+..+..+.+..+
T Consensus       267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            999999999999999999999999999976 45555555544433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=8.5e-28  Score=248.07  Aligned_cols=249  Identities=21%  Similarity=0.222  Sum_probs=201.7

Q ss_pred             CCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEE
Q 041683          326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL  405 (743)
Q Consensus       326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  405 (743)
                      .+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            36789999999999998878899999999999999999986654  889999999999999998643     34899999


Q ss_pred             eCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccc-ccccccccCccchh
Q 041683          406 DLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN-NLSAMAITDSYDQA  484 (743)
Q Consensus       406 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~  484 (743)
                      ++++|.+.+ ++..   .+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+. .++.          
T Consensus       105 ~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~----------  170 (317)
T 3o53_A          105 HAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT----------  170 (317)
T ss_dssp             ECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT----------
T ss_pred             ECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc----------
Confidence            999999984 4432   478899999999999988888899999999999999999876665542 3333          


Q ss_pred             hhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCC
Q 041683          485 VILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIG  564 (743)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  564 (743)
                                                          |++|++++|.+++. + ....+++|++|+|++|++++ +|..+.
T Consensus       171 ------------------------------------L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~  211 (317)
T 3o53_A          171 ------------------------------------LEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQ  211 (317)
T ss_dssp             ------------------------------------CCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGG
T ss_pred             ------------------------------------CCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhc
Confidence                                                69999999999865 3 23458999999999999995 555599


Q ss_pred             CCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccc-ccCCCC-cccCCCCCccccCC-CCCCCCCCCCC
Q 041683          565 VMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLV-GKIPSS-TQLQSFGASSFAGN-DLCGDPLSNCT  635 (743)
Q Consensus       565 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-~~~p~~-~~~~~l~~~~~~~n-~l~~~~~~~c~  635 (743)
                      .+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+|.. ..+..+..+++.++ .+.|.+...|.
T Consensus       212 ~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~  284 (317)
T 3o53_A          212 SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECT  284 (317)
T ss_dssp             GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCS
T ss_pred             ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccC
Confidence            9999999999999999 56778999999999999999999 434432 23444555555655 55555444453

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.2e-25  Score=241.34  Aligned_cols=247  Identities=17%  Similarity=0.212  Sum_probs=144.0

Q ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEc
Q 041683           20 LKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSM   99 (743)
Q Consensus        20 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L   99 (743)
                      .+.++.++.+++.+ |..+.  +++++|+|++|.++ .++...|.++++|++|+|+ ++.+.+..+.+|.++++|++|++
T Consensus        45 ~~~v~c~~~~l~~i-P~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLREV-PDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLS-RNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCSSC-CSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECC-SSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcCcC-CCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECC-CCcCCccChhhccCCccCCEEEC
Confidence            34555555555433 22222  45666666666665 3332256666666666666 44555555555666666666666


Q ss_pred             cCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcC-ccCccccchhccCCCCCCEEEccC
Q 041683          100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSN-TILDGSIPFSLGQISNLEYLDLSN  178 (743)
Q Consensus       100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~  178 (743)
                      ++|+++...+..+..++     +|++|++++|.+....+..|..+++|++|++++ +.+....+..|.++++|++|++++
T Consensus       120 ~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLS-----KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             CSSCCSSCCTTTSCSCS-----SCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             CCCcCCeeCHhHhhccc-----cCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            66665554444455544     666666666666555555566666666666665 333333334566666666666666


Q ss_pred             CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCcccc
Q 041683          179 NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKI  258 (743)
Q Consensus       179 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  258 (743)
                      |+++ .++.  +..+++|++|++++|.+....+..|..+++|+.|++++|++....+..|..+++|+.|++++|+++ .+
T Consensus       195 n~l~-~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~  270 (440)
T 3zyj_A          195 CNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL  270 (440)
T ss_dssp             SCCS-SCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CC
T ss_pred             CcCc-cccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-cc
Confidence            6665 4443  556666666666666666666666666666666666666666666666666666666666666665 34


Q ss_pred             ChhhhhhcccCceEecccCccc
Q 041683          259 PRGFWNSIYQYFYLNISGNQIY  280 (743)
Q Consensus       259 ~~~~~~~l~~L~~L~l~~n~l~  280 (743)
                      +...+..+++|+.|++++|++.
T Consensus       271 ~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          271 PHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTTTSSCTTCCEEECCSSCEE
T ss_pred             ChhHhccccCCCEEEcCCCCcc
Confidence            4444455666666666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=2.4e-25  Score=241.93  Aligned_cols=227  Identities=19%  Similarity=0.191  Sum_probs=116.2

Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEE
Q 041683           18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSF   97 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L   97 (743)
                      +++++|+|++|++.++.+..|.++++|++|+|++|.+++ ++...|.++++|++|+|+ +|.+++..+..|.++++|++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELF-DNWLTVIPSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECC-SSCCSBCCTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECC-CCcCCccChhhhcccCCCCEE
Confidence            355555555555555555555555555555555555552 222255555555555555 444544444455555555555


Q ss_pred             EccCCcCcccchhhhhcccccccCCccEEEccCC-cCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEc
Q 041683           98 SMRFTKLSQDISEILGIFSACVANELESLRLGSS-QIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL  176 (743)
Q Consensus        98 ~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  176 (743)
                      ++++|.+....+..+..++     +|++|++++| .+....+..|..+++|++|++++|.+++. | .+..+++|++|++
T Consensus       153 ~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L  225 (452)
T 3zyi_A          153 WLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEM  225 (452)
T ss_dssp             ECCSCCCCEECTTTTTTCT-----TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEEC
T ss_pred             ECCCCCcceeCHhHHhcCC-----cccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEEC
Confidence            5555555543334444444     5555555552 22222233455555555555555555532 2 3445555555555


Q ss_pred             cCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 041683          177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI  254 (743)
Q Consensus       177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  254 (743)
                      ++|++++..+ ..|.++++|++|++++|.+....+..|..+++|+.|++++|++....+..+..+++|+.|++++|.+
T Consensus       226 s~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          226 SGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTSCCSEECG-GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCCcCcccCc-ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            5555552222 2455555555555555555555444555555555555555555544444444455555555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=4.7e-25  Score=223.05  Aligned_cols=212  Identities=21%  Similarity=0.219  Sum_probs=147.6

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEE
Q 041683          352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILN  431 (743)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~  431 (743)
                      ++|++|++++|.+++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|.+.+..+..+ ..+++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF-SGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT-TTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh-cCCccccEEE
Confidence            356666666666665555556666666666666666665555566666666666666666653322322 3566666666


Q ss_pred             ccCCcCcccCCccccCCCCccEEEccCCccccc-cCccccccccccccCccchhhhhhccccCCCCcccccccceeeece
Q 041683          432 LRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT-IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGV  510 (743)
Q Consensus       432 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  510 (743)
                      +++|.+.+..+..+..+++|++|++++|.+.+. +|..+.+++.                                    
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~------------------------------------  150 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN------------------------------------  150 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT------------------------------------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC------------------------------------
Confidence            666666655555566777777777777777653 4555555544                                    


Q ss_pred             eeehhcccccccEEEccCCcCcccCchhhcccCCCC----EEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCcc
Q 041683          511 LVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQ----SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQS  586 (743)
Q Consensus       511 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  586 (743)
                                |++|++++|++++..+..+..+++|+    +|++++|.+++..+..+. ..+|+.|++++|++++..+..
T Consensus       151 ----------L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~  219 (276)
T 2z62_A          151 ----------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGI  219 (276)
T ss_dssp             ----------CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTT
T ss_pred             ----------CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhH
Confidence                      37777777777776666777777776    899999999966666554 458999999999999877777


Q ss_pred             ccCcCCCCeeeCcCCcccccCCCCc
Q 041683          587 MSNLSFLNHLNLSNNNLVGKIPSST  611 (743)
Q Consensus       587 l~~l~~L~~L~ls~N~l~~~~p~~~  611 (743)
                      +..+++|+.|++++|+++|.+|...
T Consensus       220 ~~~l~~L~~L~l~~N~~~c~c~~l~  244 (276)
T 2z62_A          220 FDRLTSLQKIWLHTNPWDCSCPRID  244 (276)
T ss_dssp             TTTCCSCCEEECCSSCBCCCTTTTH
T ss_pred             hcccccccEEEccCCcccccCCchH
Confidence            8999999999999999999988653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-26  Score=239.05  Aligned_cols=244  Identities=20%  Similarity=0.212  Sum_probs=150.1

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      +|++|++++|.+.+..|..|..+++|++|++++|.+++..+  +..+++|++|++++|+++ .++     ..++|++|++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~~L~l  106 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHA  106 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCCEEEC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcCEEEC
Confidence            56666666666665555666666666666666666654433  566666666666666655 222     2356666666


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      ++|.+....+..   +++|++|++++|++.+..+..+..+++|++|++++|.+++..+..+...                
T Consensus       107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~----------------  167 (317)
T 3o53_A          107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS----------------  167 (317)
T ss_dssp             CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG----------------
T ss_pred             CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc----------------
Confidence            666655443332   2345555555555554444445555555555555555544333332222                


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683          282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH  361 (743)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  361 (743)
                                                                   +++|++|++++|.+++..  ....+++|++|++++
T Consensus       168 ---------------------------------------------l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          168 ---------------------------------------------SDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSS  200 (317)
T ss_dssp             ---------------------------------------------TTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCS
T ss_pred             ---------------------------------------------cCcCCEEECCCCcCcccc--cccccccCCEEECCC
Confidence                                                         345666666666666442  223477888888888


Q ss_pred             CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCc-ccCchhHHhcccCCcEEEccCC-cCcc
Q 041683          362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV-GSIPSWIGERFSILKILNLRSN-KFHG  439 (743)
Q Consensus       362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~~l~~L~~L~L~~n-~l~~  439 (743)
                      |++++. |..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++. +.++.++. .++.|+.++++++ .+.+
T Consensus       201 N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~-~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          201 NKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             SCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHH-TCHHHHHHHHHHHHHHHS
T ss_pred             CcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHh-ccccceEEECCCchhccC
Confidence            888754 4457778888888888888884 4667888888999999999887 55555554 6888888888854 4444


Q ss_pred             cCC
Q 041683          440 DFP  442 (743)
Q Consensus       440 ~~~  442 (743)
                      ..+
T Consensus       278 ~~~  280 (317)
T 3o53_A          278 QNE  280 (317)
T ss_dssp             SSS
T ss_pred             Cch
Confidence            433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=6.3e-27  Score=240.99  Aligned_cols=245  Identities=22%  Similarity=0.281  Sum_probs=144.4

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCc-ccCCcccc-------CCCCCcEEEccCccccccCCccc--C
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT-GSLPMSIG-------TLSSLLSLNLRNNILSGIIPTSF--K  397 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~--~  397 (743)
                      ++|++|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|.+++..|..+  .
T Consensus        43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            4566666666666  444444332  666666666663 23343333       46677777777777766666554  6


Q ss_pred             CCCCCCEEeCCCCcCcccCchhHHhcc-----cCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccccc--Cccc-
Q 041683          398 NFSSLEVLDLGENELVGSIPSWIGERF-----SILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTI--PRCI-  469 (743)
Q Consensus       398 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~~-  469 (743)
                      .+++|++|++++|.+.+. |..+. .+     ++|++|++++|++.+..+..|..+++|++|++++|++.+.+  |..+ 
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             cCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            667777777777776643 54443 34     66777777777776666666677777777777777665431  1111 


Q ss_pred             -cccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcc---cCchhhcccCCC
Q 041683          470 -NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSG---EIPVEVTNLQGL  545 (743)
Q Consensus       470 -~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~---~~~~~~~~l~~L  545 (743)
                       ..+                                              +.|++|++++|++++   .....+..+++|
T Consensus       197 ~~~l----------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L  230 (312)
T 1wwl_A          197 PLKF----------------------------------------------PTLQVLALRNAGMETPSGVCSALAAARVQL  230 (312)
T ss_dssp             TTSC----------------------------------------------TTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred             hccC----------------------------------------------CCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence             222                                              234666666666662   112233456666


Q ss_pred             CEEeCCCCcCcccCC-CCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC
Q 041683          546 QSLNLSHNLLTGRIP-DNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN  624 (743)
Q Consensus       546 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n  624 (743)
                      ++|+|++|++++.+| ..+..+++|++|++++|+++ .+|..+.  ++|++||+++|++++. |....++.++.+++.+|
T Consensus       231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTC
T ss_pred             CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCC
Confidence            666666666665553 34455666666666666666 5555444  6666666666666655 44445555666666666


Q ss_pred             CCCC
Q 041683          625 DLCG  628 (743)
Q Consensus       625 ~l~~  628 (743)
                      .+.+
T Consensus       307 ~l~~  310 (312)
T 1wwl_A          307 PFLD  310 (312)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            5543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=4.2e-28  Score=274.36  Aligned_cols=228  Identities=14%  Similarity=0.046  Sum_probs=111.8

Q ss_pred             CCccEEECcCCcCcccC-CccccCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccC---------ccccccCCccc
Q 041683          328 NNIEFLKLSKNNFSGDI-PDCWMNWLRLRALNLGHNNFTGS-LPMSIGTLSSLLSLNLRN---------NILSGIIPTSF  396 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~i~~~~~~~~  396 (743)
                      ++|++|++++|.+.+.. ...+..+++|++|++++| +... ++.....+++|++|++.+         +.+++.....+
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l  367 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV  367 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence            44555555555543221 112334555555555555 2211 111122355566665532         23332211122


Q ss_pred             -CCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEcc--C----CcCccc-----CCccccCCCCccEEEccCCccccc
Q 041683          397 -KNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLR--S----NKFHGD-----FPIQLCGLAFLQILDVASNSLSGT  464 (743)
Q Consensus       397 -~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~Ls~N~l~~~  464 (743)
                       ..+++|++|+++.|.+++.....+...+++|+.|+++  +    +.++..     ++..+..+++|+.|++++ .+++.
T Consensus       368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~  446 (594)
T 2p1m_B          368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK  446 (594)
T ss_dssp             HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred             HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence             2356666666666666544444444446667777766  2    333311     111244566677777755 34322


Q ss_pred             cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhh-cccC
Q 041683          465 IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV-TNLQ  543 (743)
Q Consensus       465 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~  543 (743)
                      .+..+..                                             .+++|+.|++++|.+++.....+ .+++
T Consensus       447 ~~~~l~~---------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~  481 (594)
T 2p1m_B          447 VFEYIGT---------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCD  481 (594)
T ss_dssp             HHHHHHH---------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred             HHHHHHH---------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCC
Confidence            2222211                                             12335777777777665444444 5567


Q ss_pred             CCCEEeCCCCcCcccCCC-CCCCCCCccEEECcCCcCCCCCCccc-cCcCCCCeeeCcCCc
Q 041683          544 GLQSLNLSHNLLTGRIPD-NIGVMRSIESLDLSANQLSGQIPQSM-SNLSFLNHLNLSNNN  602 (743)
Q Consensus       544 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~ls~N~  602 (743)
                      +|++|+|++|.+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+.
T Consensus       482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            777777777777543332 33446777777777777643322222 234555444444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=6.1e-27  Score=241.07  Aligned_cols=224  Identities=24%  Similarity=0.299  Sum_probs=168.2

Q ss_pred             ccEEECcCCcCc-ccCCcccc-------CCCCCCEEECCCCcCcccCCccc--cCCCCCcEEEccCccccccCCcccCCC
Q 041683          330 IEFLKLSKNNFS-GDIPDCWM-------NWLRLRALNLGHNNFTGSLPMSI--GTLSSLLSLNLRNNILSGIIPTSFKNF  399 (743)
Q Consensus       330 L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~i~~~~~~~~~~l  399 (743)
                      ++.|++++|.+. ..++..+.       .+++|++|++++|++++..|..+  ..+++|++|++++|.+++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            777788887774 33444443       57788888888888887777765  7788888888888888766 6666655


Q ss_pred             -----CCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCccc--CCccc--cCCCCccEEEccCCccccc--cC-c
Q 041683          400 -----SSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGD--FPIQL--CGLAFLQILDVASNSLSGT--IP-R  467 (743)
Q Consensus       400 -----~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~Ls~N~l~~~--~p-~  467 (743)
                           ++|++|++++|++.+..|..+. .+++|++|++++|++.+.  .+..+  ..+++|++|++++|++.+.  ++ .
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence                 7888888888888744434443 678888888888887654  22233  7788889999998888731  11 1


Q ss_pred             cccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCc-hhhcccCCCC
Q 041683          468 CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIP-VEVTNLQGLQ  546 (743)
Q Consensus       468 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~  546 (743)
                      .+..                                              ++.|++|++++|++++..| ..+..+++|+
T Consensus       223 ~~~~----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  256 (312)
T 1wwl_A          223 LAAA----------------------------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLN  256 (312)
T ss_dssp             HHHT----------------------------------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCC
T ss_pred             HHhc----------------------------------------------CCCCCEEECCCCcCCcccchhhhhhcCCCC
Confidence            1122                                              3346889999999987765 4567789999


Q ss_pred             EEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCccccc
Q 041683          547 SLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGK  606 (743)
Q Consensus       547 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~  606 (743)
                      +|+|++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++.
T Consensus       257 ~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             EEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            9999999999 7888776  8999999999999976 66 88999999999999999863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=3.7e-27  Score=266.58  Aligned_cols=157  Identities=15%  Similarity=0.091  Sum_probs=85.9

Q ss_pred             CCCCcEEEccCccccccCCcccC-CCCCCCEEeCC--C----CcCcccCch-----hHHhcccCCcEEEccCCcCcccCC
Q 041683          375 LSSLLSLNLRNNILSGIIPTSFK-NFSSLEVLDLG--E----NELVGSIPS-----WIGERFSILKILNLRSNKFHGDFP  442 (743)
Q Consensus       375 l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls--~----n~i~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~  442 (743)
                      +++|++|.+..|.+++.....+. .+++|+.|+++  +    +.++ ..|.     .+...+++|+.|++++ .+++...
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            56666666666666544333333 35666666666  2    3343 1111     1233566777777765 4443333


Q ss_pred             ccccC-CCCccEEEccCCccccccCccc-cccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccccc
Q 041683          443 IQLCG-LAFLQILDVASNSLSGTIPRCI-NNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL  520 (743)
Q Consensus       443 ~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (743)
                      ..+.. +++|+.|++++|.+++..+..+ ..                                              +++
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~----------------------------------------------~~~  482 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSG----------------------------------------------CDS  482 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHH----------------------------------------------CTT
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhc----------------------------------------------CCC
Confidence            33333 6677777777777654322222 11                                              333


Q ss_pred             ccEEEccCCcCcccCch-hhcccCCCCEEeCCCCcCcccCCCCC-CCCCCccEEECcCCcC
Q 041683          521 VRSIDVSKNIFSGEIPV-EVTNLQGLQSLNLSHNLLTGRIPDNI-GVMRSIESLDLSANQL  579 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l  579 (743)
                      |++|++++|.+++.... ....+++|++|++++|+++......+ ..++.|+...+..+.-
T Consensus       483 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            57777777777544333 23457778888888887754333333 3456776666665544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.8e-24  Score=239.08  Aligned_cols=202  Identities=27%  Similarity=0.282  Sum_probs=129.1

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  407 (743)
                      ++|++|++++|.+.+. |.   .+++|+.|++++|++++ +|..   +++|++|++++|.++++ |.   .+++|+.|++
T Consensus       101 ~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L  168 (622)
T 3g06_A          101 PGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWA  168 (622)
T ss_dssp             TTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEEC
Confidence            4566666666666532 22   34566666666666663 3332   35666666666666643 22   2356666777


Q ss_pred             CCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhh
Q 041683          408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVIL  487 (743)
Q Consensus       408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  487 (743)
                      ++|.++ .+|    ..+++|+.|++++|.+.+ +|..   +++|+.|++++|.+. .+|..                   
T Consensus       169 ~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~-------------------  219 (622)
T 3g06_A          169 YNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL-------------------  219 (622)
T ss_dssp             CSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC-------------------
T ss_pred             CCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC-------------------
Confidence            777666 455    235667777777777664 3322   356777777777665 22221                   


Q ss_pred             hccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCC
Q 041683          488 YSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR  567 (743)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  567 (743)
                                                    +++|+.|++++|.+++ +|   ..+++|+.|+|++|.++ .+|.   .++
T Consensus       220 ------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~  261 (622)
T 3g06_A          220 ------------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS  261 (622)
T ss_dssp             ------------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred             ------------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence                                          1235777777777774 44   44577888888888887 5555   567


Q ss_pred             CccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683          568 SIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       568 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  609 (743)
                      +|+.|+|++|+++ .+|..+..+++|+.|+|++|++++.+|.
T Consensus       262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            8888888888888 6677788888888888888888877665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-25  Score=244.92  Aligned_cols=227  Identities=21%  Similarity=0.173  Sum_probs=194.6

Q ss_pred             hhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccC
Q 041683          318 HLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFK  397 (743)
Q Consensus       318 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~  397 (743)
                      ..+......+++|++|++++|.+.+..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+    
T Consensus        24 ~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----   97 (487)
T 3oja_A           24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----   97 (487)
T ss_dssp             HHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----
T ss_pred             HHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----
Confidence            3333333446689999999999998888899999999999999999997665  8899999999999999986543    


Q ss_pred             CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccc-cccccc
Q 041683          398 NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCIN-NLSAMA  476 (743)
Q Consensus       398 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~  476 (743)
                       .++|++|++++|.+.+..+ .   .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .++.  
T Consensus        98 -~~~L~~L~L~~N~l~~~~~-~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~--  170 (487)
T 3oja_A           98 -GPSIETLHAANNNISRVSC-S---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT--  170 (487)
T ss_dssp             -CTTCCEEECCSSCCCCEEE-C---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT--
T ss_pred             -CCCcCEEECcCCcCCCCCc-c---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc--
Confidence             3899999999999985433 2   478999999999999998888999999999999999999987777664 4444  


Q ss_pred             ccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCc
Q 041683          477 ITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLT  556 (743)
Q Consensus       477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  556 (743)
                                                                  |+.|++++|.+++..+  +..+++|+.|+|++|.++
T Consensus       171 --------------------------------------------L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~  204 (487)
T 3oja_A          171 --------------------------------------------LEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA  204 (487)
T ss_dssp             --------------------------------------------CCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCC
T ss_pred             --------------------------------------------ccEEecCCCccccccc--cccCCCCCEEECCCCCCC
Confidence                                                        5999999999997633  446999999999999999


Q ss_pred             ccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccc
Q 041683          557 GRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG  605 (743)
Q Consensus       557 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  605 (743)
                      +.+ ..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+
T Consensus       205 ~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          205 FMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             EEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred             CCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence            654 459999999999999999995 67779999999999999999983

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.9e-24  Score=216.16  Aligned_cols=207  Identities=21%  Similarity=0.216  Sum_probs=132.4

Q ss_pred             ccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCC
Q 041683          330 IEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE  409 (743)
Q Consensus       330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~  409 (743)
                      .+.+++++++++. +|..+.  +++++|++++|++++..+..|..+++|++|++++|.++.+.+..|..+++|       
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L-------   87 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL-------   87 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC-------
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC-------
Confidence            4555555555552 332221  345555555555554444445555555555555555544444444444444       


Q ss_pred             CcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhc
Q 041683          410 NELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYS  489 (743)
Q Consensus       410 n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  489 (743)
                                        ++|++++|++.+..+..|..+++|++|++++|++.+..+..|..++.               
T Consensus        88 ------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~---------------  134 (270)
T 2o6q_A           88 ------------------ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK---------------  134 (270)
T ss_dssp             ------------------CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT---------------
T ss_pred             ------------------CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC---------------
Confidence                              44555555444443444455555555555555555444444444333               


Q ss_pred             cccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCc
Q 041683          490 SLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSI  569 (743)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  569 (743)
                                                     |++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus       135 -------------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  183 (270)
T 2o6q_A          135 -------------------------------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL  183 (270)
T ss_dssp             -------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             -------------------------------CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCc
Confidence                                           3666666666665555667888999999999999997777789999999


Q ss_pred             cEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          570 ESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       570 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                      +.|++++|++++..+..+..+++|+.|++++|++.+.++..
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  224 (270)
T 2o6q_A          184 KTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI  224 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred             CEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence            99999999999777778889999999999999999887643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=4.5e-24  Score=237.41  Aligned_cols=270  Identities=24%  Similarity=0.280  Sum_probs=197.6

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|+|++|+++ .+|.    .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence            5777777777775 4444443  67777777777777 3443   4577777777777776 4544    5677777777


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      ++|.+.....    .+.+|+.|++++|++.. +|.   .+++|++|++++|.+++ +|.    .+.+|+.|++++|.+++
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~----~~~~L~~L~L~~N~l~~  175 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPA----LPSELCKLWAYNNQLTS  175 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCC-cCC----ccCCCCEEECCCCCCCC
Confidence            7777765332    45567777777777764 333   24778888888888864 443    24577888888877753


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683          282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH  361 (743)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  361 (743)
                       +|                                        ..+++|+.|++++|.+.+ +|.   .+++|+.|++++
T Consensus       176 -l~----------------------------------------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~  210 (622)
T 3g06_A          176 -LP----------------------------------------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYN  210 (622)
T ss_dssp             -CC----------------------------------------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred             -Cc----------------------------------------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcC
Confidence             11                                        114679999999999885 333   247899999999


Q ss_pred             CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccC
Q 041683          362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF  441 (743)
Q Consensus       362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  441 (743)
                      |.++ .+|..   +++|++|++++|.++++ |   ..+++|+.|++++|.++ .+|.    .+++|+.|++++|+++ .+
T Consensus       211 N~l~-~l~~~---~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~l  276 (622)
T 3g06_A          211 NRLT-SLPAL---PSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RL  276 (622)
T ss_dssp             SCCS-SCCCC---CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SC
T ss_pred             Cccc-ccCCC---CCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cC
Confidence            9988 44432   47899999999999863 4   45688999999999998 6776    4788999999999999 67


Q ss_pred             CccccCCCCccEEEccCCccccccCccccccccc
Q 041683          442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM  475 (743)
Q Consensus       442 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  475 (743)
                      |..+.++++|+.|++++|++++..|..+..++..
T Consensus       277 p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~~  310 (622)
T 3g06_A          277 PESLIHLSSETTVNLEGNPLSERTLQALREITSA  310 (622)
T ss_dssp             CGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHHS
T ss_pred             CHHHhhccccCEEEecCCCCCCcCHHHHHhcccc
Confidence            8889999999999999999998888877766643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8.8e-24  Score=213.64  Aligned_cols=212  Identities=23%  Similarity=0.227  Sum_probs=184.6

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  407 (743)
                      +++++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999999888889999999999999999999888888999999999999999999988899999999999999


Q ss_pred             CCCcCcccCchhHHhcccCCcEEEccCCcCccc-CCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683          408 GENELVGSIPSWIGERFSILKILNLRSNKFHGD-FPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI  486 (743)
Q Consensus       408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  486 (743)
                      ++|.+.+ ++...+..+++|++|++++|.+.+. +|..+..+++|++|++++|++.+..+..+..+..+..         
T Consensus       108 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~---------  177 (276)
T 2z62_A          108 VETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL---------  177 (276)
T ss_dssp             TTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---------
T ss_pred             CCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc---------
Confidence            9999984 4443344799999999999999864 5889999999999999999999877777776665421         


Q ss_pred             hhccccCCCCcccccccceeeeceeeehhccccccc-EEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683          487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVR-SIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV  565 (743)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  565 (743)
                                                        +. .|++++|++++..+..+. ..+|++|+|++|++++..+..|..
T Consensus       178 ----------------------------------l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          178 ----------------------------------LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             ----------------------------------CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred             ----------------------------------cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence                                              22 899999999976666555 458999999999999777777899


Q ss_pred             CCCccEEECcCCcCCCCCC
Q 041683          566 MRSIESLDLSANQLSGQIP  584 (743)
Q Consensus       566 l~~L~~L~Ls~N~l~~~~p  584 (743)
                      +++|+.|++++|++++..|
T Consensus       223 l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCSCCEEECCSSCBCCCTT
T ss_pred             cccccEEEccCCcccccCC
Confidence            9999999999999996543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=5.2e-25  Score=240.41  Aligned_cols=238  Identities=21%  Similarity=0.183  Sum_probs=200.8

Q ss_pred             CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCC
Q 041683           16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLT   95 (743)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~   95 (743)
                      .+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..+   +..+++|++|+|+ +|.+++..     ..++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls-~N~l~~l~-----~~~~L~  102 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN-NNYVQELL-----VGPSIE  102 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECC-SSEEEEEE-----ECTTCC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEec-CCcCCCCC-----CCCCcC
Confidence            44589999999999999999999999999999999999985433   8899999999999 66775433     348999


Q ss_pred             EEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhcc-CCCCCCEE
Q 041683           96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLG-QISNLEYL  174 (743)
Q Consensus        96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L  174 (743)
                      +|++++|.+++..+..   ++     +|++|++++|.+.+..|..+..+++|++|+|++|.+++..|..+. .+++|++|
T Consensus       103 ~L~L~~N~l~~~~~~~---l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A          103 TLHAANNNISRVSCSR---GQ-----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             EEECCSSCCCCEEECC---CS-----SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             EEECcCCcCCCCCccc---cC-----CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence            9999999998755432   33     899999999999998898999999999999999999988888886 79999999


Q ss_pred             EccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCC
Q 041683          175 DLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRI  254 (743)
Q Consensus       175 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  254 (743)
                      +|++|.+++. +.  ...+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+ +|.++..+++|+.|++++|.+
T Consensus       175 ~Ls~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          175 NLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             ECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred             ecCCCccccc-cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence            9999999854 33  4568999999999999987654 48889999999999999984 677789999999999999999


Q ss_pred             ccccChhhhhhcccCceEecc
Q 041683          255 SAKIPRGFWNSIYQYFYLNIS  275 (743)
Q Consensus       255 ~~~~~~~~~~~l~~L~~L~l~  275 (743)
                      ....+..++..++.++.+++.
T Consensus       250 ~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          250 HCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCcchHHHHHhCCCCcEEecc
Confidence            733333344556777777776

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.1e-23  Score=213.55  Aligned_cols=206  Identities=22%  Similarity=0.271  Sum_probs=147.7

Q ss_pred             ccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCC
Q 041683          348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSIL  427 (743)
Q Consensus       348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L  427 (743)
                      +..++++++++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.++ .++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            344556666666666665 3333332  45666666666666665666666666666666666665 33332  256677


Q ss_pred             cEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceee
Q 041683          428 KILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVM  507 (743)
Q Consensus       428 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (743)
                      ++|++++|++. .+|..+..+++|++|++++|++++..|..|..++.                                 
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~---------------------------------  125 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE---------------------------------  125 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT---------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC---------------------------------
Confidence            77777777776 45666677777777777777777665566665555                                 


Q ss_pred             eceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccc
Q 041683          508 KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM  587 (743)
Q Consensus       508 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  587 (743)
                                   |++|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+
T Consensus       126 -------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~  191 (290)
T 1p9a_G          126 -------------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF  191 (290)
T ss_dssp             -------------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred             -------------CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhh
Confidence                         377888888887777777888999999999999999666667788999999999999998 677777


Q ss_pred             cCcCCCCeeeCcCCcccccC
Q 041683          588 SNLSFLNHLNLSNNNLVGKI  607 (743)
Q Consensus       588 ~~l~~L~~L~ls~N~l~~~~  607 (743)
                      ..+.+|+.+++++|++.|.+
T Consensus       192 ~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             TTTCCCSEEECCSCCBCCSG
T ss_pred             cccccCCeEEeCCCCccCcC
Confidence            78889999999999998765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=5.4e-23  Score=206.89  Aligned_cols=201  Identities=22%  Similarity=0.235  Sum_probs=156.2

Q ss_pred             eEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEc
Q 041683          304 IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL  383 (743)
Q Consensus       304 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  383 (743)
                      .++++++.++. +|..+      .+++++|++++|++.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus        20 ~l~~~~~~l~~-ip~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           20 SVDCSSKKLTA-IPSNI------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             EEECTTSCCSS-CCSCC------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             EEEccCCCCCc-cCCCC------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            78999998875 44332      357999999999999887789999999999999999999777777899999999999


Q ss_pred             cCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc
Q 041683          384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG  463 (743)
Q Consensus       384 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  463 (743)
                      ++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..|..+++|+.|++++|++. 
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-  170 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-  170 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-
Confidence            999999887778888889999999888887 444443345667777777777666554444555666666655555554 


Q ss_pred             ccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccC
Q 041683          464 TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ  543 (743)
Q Consensus       464 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  543 (743)
                                                                                           +..+..|..++
T Consensus       171 ---------------------------------------------------------------------~~~~~~~~~l~  181 (270)
T 2o6q_A          171 ---------------------------------------------------------------------RVPEGAFDKLT  181 (270)
T ss_dssp             ---------------------------------------------------------------------CCCTTTTTTCT
T ss_pred             ---------------------------------------------------------------------EeChhHhccCC
Confidence                                                                                 34444567778


Q ss_pred             CCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCC
Q 041683          544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQ  582 (743)
Q Consensus       544 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  582 (743)
                      +|++|+|++|++++..+..|..+++|+.|++++|++...
T Consensus       182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            888888888888866666788888888888888888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.8e-23  Score=209.07  Aligned_cols=205  Identities=21%  Similarity=0.200  Sum_probs=143.7

Q ss_pred             ccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCC
Q 041683          348 WMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSIL  427 (743)
Q Consensus       348 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L  427 (743)
                      ...+++|+.|++++|.+.. . ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+. .++...+..+++|
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L  111 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL  111 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred             cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence            3445566666666666652 2 2355666666666666666543  35666666777777777666 3443333356677


Q ss_pred             cEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceee
Q 041683          428 KILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVM  507 (743)
Q Consensus       428 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  507 (743)
                      ++|++++|++.+..+..|..+++|++|++++|++.+..+..+..++.                                 
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~---------------------------------  158 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN---------------------------------  158 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT---------------------------------
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc---------------------------------
Confidence            77777777776655556677777777777777777555555554444                                 


Q ss_pred             eceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccc
Q 041683          508 KGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSM  587 (743)
Q Consensus       508 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  587 (743)
                                   |+.|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+.     
T Consensus       159 -------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----  220 (272)
T 3rfs_A          159 -------------LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----  220 (272)
T ss_dssp             -------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----
T ss_pred             -------------CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----
Confidence                         47777777777766677778889999999999999988777788899999999999988754     


Q ss_pred             cCcCCCCeeeCcCCcccccCCCC
Q 041683          588 SNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       588 ~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                        ++.|+.++++.|.++|.+|..
T Consensus       221 --~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          221 --CPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             --TTTTHHHHHHHHHTGGGBBCT
T ss_pred             --CcHHHHHHHHHHhCCCcccCc
Confidence              446888899999999998874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.7e-22  Score=204.88  Aligned_cols=202  Identities=21%  Similarity=0.169  Sum_probs=178.0

Q ss_pred             CCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEE
Q 041683          326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL  405 (743)
Q Consensus       326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  405 (743)
                      .++++++++++++.++. +|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.++++.+  ...+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence            46789999999999985 454443  689999999999998888899999999999999999997644  3789999999


Q ss_pred             eCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhh
Q 041683          406 DLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAV  485 (743)
Q Consensus       406 ~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  485 (743)
                      ++++|.+. .+|..+. .+++|++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++           
T Consensus        83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------  149 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-----------  149 (290)
T ss_dssp             ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----------
T ss_pred             ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccC-----------
Confidence            99999998 7887654 7999999999999999887788999999999999999999776666666655           


Q ss_pred             hhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCC
Q 041683          486 ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGV  565 (743)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  565 (743)
                                                         |+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+..
T Consensus       150 -----------------------------------L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~  193 (290)
T 1p9a_G          150 -----------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (290)
T ss_dssp             -----------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             -----------------------------------CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence                                               599999999999777777899999999999999999 78888888


Q ss_pred             CCCccEEECcCCcCCC
Q 041683          566 MRSIESLDLSANQLSG  581 (743)
Q Consensus       566 l~~L~~L~Ls~N~l~~  581 (743)
                      +.+|+.|+|++|++..
T Consensus       194 ~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          194 SHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TCCCSEEECCSCCBCC
T ss_pred             cccCCeEEeCCCCccC
Confidence            9999999999999974

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.5e-24  Score=225.40  Aligned_cols=259  Identities=19%  Similarity=0.204  Sum_probs=197.2

Q ss_pred             eEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCC----ccccCCC-CCCEEECCCCcCcccCCccccCC---
Q 041683          304 IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIP----DCWMNWL-RLRALNLGHNNFTGSLPMSIGTL---  375 (743)
Q Consensus       304 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l---  375 (743)
                      ..+++.+.+++.++....    ..++|++|++++|.+.+..+    ..+..++ +|++|++++|.+++..+..+..+   
T Consensus         2 ~~~ls~n~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~   77 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTS----IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA   77 (362)
T ss_dssp             EEECCCCTTCCHHHHHHT----SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             ccccccccchHHHHHHHh----CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence            356677777777665543    25669999999999997766    7788888 89999999999997777666664   


Q ss_pred             --CCCcEEEccCccccccCCcc----cCCC-CCCCEEeCCCCcCcccCchhHHhc----ccCCcEEEccCCcCcccCC--
Q 041683          376 --SSLLSLNLRNNILSGIIPTS----FKNF-SSLEVLDLGENELVGSIPSWIGER----FSILKILNLRSNKFHGDFP--  442 (743)
Q Consensus       376 --~~L~~L~L~~n~i~~~~~~~----~~~l-~~L~~L~Ls~n~i~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~~--  442 (743)
                        ++|++|++++|.+++..+..    +..+ ++|++|++++|.+.+..+..+...    .++|++|++++|.+.....  
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence              89999999999998776654    4444 899999999999986555544322    3689999999999985433  


Q ss_pred             --ccccCCC-CccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccc-
Q 041683          443 --IQLCGLA-FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSIL-  518 (743)
Q Consensus       443 --~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  518 (743)
                        ..+..++ +|++|++++|++++..+..+...-                                          ... 
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------------------~~~~  195 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------------------ASIP  195 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------------------HTSC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------------------HhCC
Confidence              3345555 999999999999876655443220                                          012 


Q ss_pred             ccccEEEccCCcCccc----Cchhhcc-cCCCCEEeCCCCcCcccCC----CCCCCCCCccEEECcCCcCCCCCC-----
Q 041683          519 NLVRSIDVSKNIFSGE----IPVEVTN-LQGLQSLNLSHNLLTGRIP----DNIGVMRSIESLDLSANQLSGQIP-----  584 (743)
Q Consensus       519 ~~L~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~~~~p-----  584 (743)
                      +.|++||+++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|+.|++++|.+.+..+     
T Consensus       196 ~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~  275 (362)
T 3goz_A          196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA  275 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH
T ss_pred             CCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHH
Confidence            2479999999999863    4555655 4599999999999986544    446778999999999999654433     


Q ss_pred             --ccccCcCCCCeeeCcCCcccccCC
Q 041683          585 --QSMSNLSFLNHLNLSNNNLVGKIP  608 (743)
Q Consensus       585 --~~l~~l~~L~~L~ls~N~l~~~~p  608 (743)
                        ..+..+++|+.||+++|++....|
T Consensus       276 l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          276 LGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             HHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHHHhccCCceEEEecCCCcCCCcch
Confidence              457788899999999999876633

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=8e-23  Score=205.78  Aligned_cols=208  Identities=22%  Similarity=0.232  Sum_probs=182.2

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      +++|+.|++++|.+...  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            57899999999998743  3588899999999999999863  4788999999999999999988888899999999999


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI  486 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  486 (743)
                      +++|++. .++...+..+++|++|++++|++.+..+..+..+++|+.|++++|++++..+..+..++.            
T Consensus       116 L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~------------  182 (272)
T 3rfs_A          116 LVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQ------------  182 (272)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT------------
T ss_pred             CCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCcc------------
Confidence            9999998 555554457999999999999999877778899999999999999999777766666665            


Q ss_pred             hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCC
Q 041683          487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM  566 (743)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  566 (743)
                                                        |+.|++++|++++..+..+..+++|+.|++++|.+.+.       +
T Consensus       183 ----------------------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~  221 (272)
T 3rfs_A          183 ----------------------------------LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------C  221 (272)
T ss_dssp             ----------------------------------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------T
T ss_pred             ----------------------------------CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------C
Confidence                                              59999999999988888899999999999999998744       4


Q ss_pred             CCccEEECcCCcCCCCCCccccCcCC
Q 041683          567 RSIESLDLSANQLSGQIPQSMSNLSF  592 (743)
Q Consensus       567 ~~L~~L~Ls~N~l~~~~p~~l~~l~~  592 (743)
                      ++|+.|+++.|.++|.+|..++.+..
T Consensus       222 ~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          222 PGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cHHHHHHHHHHhCCCcccCcccccCC
Confidence            57999999999999999998776543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.1e-24  Score=231.76  Aligned_cols=243  Identities=15%  Similarity=0.205  Sum_probs=191.5

Q ss_pred             hccCCCCCCCccEEECcCCcCcccCC----ccccCCCCCCEEECCCCcC---cccCCccc-------cCCCCCcEEEccC
Q 041683          320 ICQGENFSNNIEFLKLSKNNFSGDIP----DCWMNWLRLRALNLGHNNF---TGSLPMSI-------GTLSSLLSLNLRN  385 (743)
Q Consensus       320 ~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l---~~~~~~~~-------~~l~~L~~L~L~~  385 (743)
                      ++..+..+++|++|++++|.+....+    ..+..+++|++|+|++|.+   .+.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            33444457889999999999986533    4477899999999999744   44455444       6889999999999


Q ss_pred             ccccc----cCCcccCCCCCCCEEeCCCCcCcccCchhHHh---cc---------cCCcEEEccCCcCc-ccCC---ccc
Q 041683          386 NILSG----IIPTSFKNFSSLEVLDLGENELVGSIPSWIGE---RF---------SILKILNLRSNKFH-GDFP---IQL  445 (743)
Q Consensus       386 n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~---~l---------~~L~~L~L~~n~l~-~~~~---~~~  445 (743)
                      |.+..    .++..+..+++|++|+|++|.+.+..+..+..   .+         ++|++|++++|++. +.++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99987    46677889999999999999997444433332   23         89999999999997 3344   457


Q ss_pred             cCCCCccEEEccCCcccc-----ccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhccccc
Q 041683          446 CGLAFLQILDVASNSLSG-----TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNL  520 (743)
Q Consensus       446 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  520 (743)
                      ..+++|++|++++|++..     ..|..+..+                                              +.
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~----------------------------------------------~~  217 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC----------------------------------------------QE  217 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC----------------------------------------------TT
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC----------------------------------------------CC
Confidence            788999999999999872     222233333                                              44


Q ss_pred             ccEEEccCCcCc----ccCchhhcccCCCCEEeCCCCcCccc----CCCCC--CCCCCccEEECcCCcCCC----CCCcc
Q 041683          521 VRSIDVSKNIFS----GEIPVEVTNLQGLQSLNLSHNLLTGR----IPDNI--GVMRSIESLDLSANQLSG----QIPQS  586 (743)
Q Consensus       521 L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~  586 (743)
                      |+.|+|++|.++    ..+|..+..+++|++|+|++|.+++.    ++..+  +.+++|+.|+|++|.+++    .+|..
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            699999999996    67888899999999999999999865    56666  348999999999999997    47777


Q ss_pred             c-cCcCCCCeeeCcCCcccccCC
Q 041683          587 M-SNLSFLNHLNLSNNNLVGKIP  608 (743)
Q Consensus       587 l-~~l~~L~~L~ls~N~l~~~~p  608 (743)
                      + .++++|++|++++|++++..|
T Consensus       298 l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          298 IDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHhcCCCceEEEccCCcCCcchh
Confidence            6 568999999999999998765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=2.5e-22  Score=199.58  Aligned_cols=211  Identities=19%  Similarity=0.222  Sum_probs=131.5

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEc
Q 041683          353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNL  432 (743)
Q Consensus       353 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L  432 (743)
                      ..++++++++.++ .+|..+.  +++++|++++|.+++..+..|..+++|++|++++|.+.+ ++...+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence            4566777777766 4444443  466666666666666666566666666666666666653 22222224445555555


Q ss_pred             cCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceee
Q 041683          433 RSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLV  512 (743)
Q Consensus       433 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  512 (743)
                      ++|++.+..+..|..+++|                                                             
T Consensus        91 ~~n~l~~~~~~~~~~l~~L-------------------------------------------------------------  109 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQL-------------------------------------------------------------  109 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTC-------------------------------------------------------------
T ss_pred             CCCcccccChhHhcccCCC-------------------------------------------------------------
Confidence            5555544333344444444                                                             


Q ss_pred             ehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCC
Q 041683          513 EYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSF  592 (743)
Q Consensus       513 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  592 (743)
                               ++|++++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++
T Consensus       110 ---------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          110 ---------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             ---------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             ---------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCC
Confidence                     55555555555555556778889999999999999777778999999999999999999888888999999


Q ss_pred             CCeeeCcCCcccccCCCCcccC------CCCCccccCCCCCCCCCC-CCCCC
Q 041683          593 LNHLNLSNNNLVGKIPSSTQLQ------SFGASSFAGNDLCGDPLS-NCTEK  637 (743)
Q Consensus       593 L~~L~ls~N~l~~~~p~~~~~~------~l~~~~~~~n~l~~~~~~-~c~~~  637 (743)
                      |+.|++++|+++|..+....+.      ........|+.+++.|.. .|...
T Consensus       181 L~~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~  232 (251)
T 3m19_A          181 LQTITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSDG  232 (251)
T ss_dssp             CCEEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTTS
T ss_pred             CCEEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCCC
Confidence            9999999999998754432211      111223445666666554 56543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.6e-23  Score=220.47  Aligned_cols=259  Identities=17%  Similarity=0.090  Sum_probs=174.3

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCc----hhhcCCC-CCCEEEcCCCccccccCcccccCC-----CCCC
Q 041683            1 LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVL----GWLSKVN-DLEFLSVYSNRLQGNVSSLGLENL-----TSIK   70 (743)
Q Consensus         1 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l-----~~L~   70 (743)
                      |+.|++++.+|..+...++|++|||++|.+.+..+    +.|..++ +|++|+|++|.+++..+. .+..+     ++|+
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-~l~~~l~~~~~~L~   83 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD-ELVQILAAIPANVT   83 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH-HHHHHHHTSCTTCC
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH-HHHHHHhccCCCcc
Confidence            56788888777766777778888888888877776    7778888 888888888888744333 55554     8888


Q ss_pred             EEEcCCCCcCCcccchh----ccCC-CCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccc----hhhc
Q 041683           71 RLYLSENDELGGKIPTS----FGKL-CKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHL----TNQL  141 (743)
Q Consensus        71 ~L~Ls~~~~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~----~~~l  141 (743)
                      +|+|+ +|.+++..+..    +..+ ++|++|++++|.++...+..+...-.....+|++|++++|.+....    +..+
T Consensus        84 ~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           84 SLNLS-GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             EEECC-SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             EEECc-CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            88888 66676666554    3444 7888888888888776665554321111127888888888886533    3344


Q ss_pred             cCCC-CCCEEECcCccCccccchhc----cCC-CCCCEEEccCCCCccc----cChhhhcC-CCCCCEEECCCCcceeec
Q 041683          142 RRFK-RLNSLDLSNTILDGSIPFSL----GQI-SNLEYLDLSNNKLNGT----VSEIHFVN-LTKLAFFRANGNSLIFKI  210 (743)
Q Consensus       142 ~~l~-~L~~L~Ls~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~~-l~~L~~L~l~~n~~~~~~  210 (743)
                      ..++ +|++|+|++|.+++..+..+    ..+ ++|++|+|++|.+++.    ++. .+.. .++|++|++++|.+....
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-IFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH-HHHHSCTTCCEEECCSSCCCCCC
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH-HHhcCCCCceEEECcCCCCCcHH
Confidence            5555 88888888888876665443    344 5888888888888731    333 2333 457888888888776533


Q ss_pred             C----CCCCCCccccEEEcCCCcCCCCc-------chhhcCCCCCCEEEccCCCCccccChhh
Q 041683          211 N----PNWVPPFQLTVLELRSCHLGPRF-------PLWLQSQRELNDLDISSTRISAKIPRGF  262 (743)
Q Consensus       211 ~----~~~~~~~~L~~L~l~~n~l~~~~-------~~~l~~l~~L~~L~l~~n~i~~~~~~~~  262 (743)
                      .    ..+..+++|++|++++|.+....       +..+..+++|+.|++++|.+.+..+..+
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~  304 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI  304 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence            2    23455667777777777744322       2244566667777777777765544433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.4e-23  Score=223.19  Aligned_cols=264  Identities=14%  Similarity=0.149  Sum_probs=181.0

Q ss_pred             CCCCCCCCCCCCEEECCCCCCCCCCch----hhcCCCCCCEEEcCCCcc---ccccCcc------cccCCCCCCEEEcCC
Q 041683           10 IPSRLGNLTSLKYLDLSSNELNSTVLG----WLSKVNDLEFLSVYSNRL---QGNVSSL------GLENLTSIKRLYLSE   76 (743)
Q Consensus        10 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l---~~~~~~~------~~~~l~~L~~L~Ls~   76 (743)
                      ++.++..+++|++|+|++|.+....+.    .|..+++|++|+|++|.+   ++.+|..      .+.++++|++|+|+ 
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls-  102 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS-  102 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC-
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC-
Confidence            455677788899999999888765443    466888899999988643   3344441      13678889999998 


Q ss_pred             CCcCCc----ccchhccCCCCCCEEEccCCcCcccchhhhhccccccc---------CCccEEEccCCcCc-ccch---h
Q 041683           77 NDELGG----KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA---------NELESLRLGSSQIF-GHLT---N  139 (743)
Q Consensus        77 ~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~---------~~L~~L~L~~n~~~-~~~~---~  139 (743)
                      ++.+.+    .+|..+.++++|++|++++|.++...+..+...- ...         ++|++|++++|++. ...+   .
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL-QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH-HHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHH-HHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            666766    4677788888899999988888654443333220 000         27888888888886 3344   4


Q ss_pred             hccCCCCCCEEECcCccCcc-----ccchhccCCCCCCEEEccCCCCc----cccChhhhcCCCCCCEEECCCCcceee-
Q 041683          140 QLRRFKRLNSLDLSNTILDG-----SIPFSLGQISNLEYLDLSNNKLN----GTVSEIHFVNLTKLAFFRANGNSLIFK-  209 (743)
Q Consensus       140 ~l~~l~~L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~l~~n~~~~~-  209 (743)
                      .+..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    ..++. .+..+++|++|++++|.+... 
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~  260 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARG  260 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhh
Confidence            56778888888888888873     23447778888888888888885    35555 577888888888888887654 


Q ss_pred             ---cCCCC--CCCccccEEEcCCCcCCC----Ccchhh-cCCCCCCEEEccCCCCccccC--hhhhhhcccCceEeccc
Q 041683          210 ---INPNW--VPPFQLTVLELRSCHLGP----RFPLWL-QSQRELNDLDISSTRISAKIP--RGFWNSIYQYFYLNISG  276 (743)
Q Consensus       210 ---~~~~~--~~~~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~l~~  276 (743)
                         ++..+  ..+++|+.|++++|.++.    .+|..+ .++++|+.|++++|.+++..+  ..+...+++++.+++..
T Consensus       261 ~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~  339 (386)
T 2ca6_A          261 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE  339 (386)
T ss_dssp             HHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred             HHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence               22333  236677888888887765    355555 556778888888887776553  44455555555444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=3.1e-22  Score=197.45  Aligned_cols=85  Identities=19%  Similarity=0.218  Sum_probs=41.4

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCc-CcccCCccccCCCCCcEEEccC-ccccccCCcccCCCCCCCEEe
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN-FTGSLPMSIGTLSSLLSLNLRN-NILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      ++++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |.++++.+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554444444455555555555554 4433334444455555555554 444444444444444455555


Q ss_pred             CCCCcCc
Q 041683          407 LGENELV  413 (743)
Q Consensus       407 Ls~n~i~  413 (743)
                      +++|+++
T Consensus       112 l~~n~l~  118 (239)
T 2xwt_C          112 IFNTGLK  118 (239)
T ss_dssp             EEEECCC
T ss_pred             CCCCCCc
Confidence            5444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.6e-22  Score=207.83  Aligned_cols=205  Identities=21%  Similarity=0.259  Sum_probs=123.1

Q ss_pred             CCccEEECcCCcCcccCCccc--cCCCCCCEEECCCCcCcccCC----ccccCCCCCcEEEccCccccccCCcccCCCCC
Q 041683          328 NNIEFLKLSKNNFSGDIPDCW--MNWLRLRALNLGHNNFTGSLP----MSIGTLSSLLSLNLRNNILSGIIPTSFKNFSS  401 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  401 (743)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..|..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            346666666666666666555  566666666666666664333    22334566666666666666555566666666


Q ss_pred             CCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCc----cccccccccc
Q 041683          402 LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR----CINNLSAMAI  477 (743)
Q Consensus       402 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~  477 (743)
                      |++|++++|++.+...  +                   ..+..+..+++|++|++++|+++. ++.    .+..      
T Consensus       171 L~~L~Ls~N~l~~~~~--~-------------------~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~------  222 (310)
T 4glp_A          171 LTSLDLSDNPGLGERG--L-------------------MAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA------  222 (310)
T ss_dssp             CCEEECCSCTTCHHHH--H-------------------HTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH------
T ss_pred             CCEEECCCCCCccchh--h-------------------hHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc------
Confidence            6666666666542100  0                   001122345555566666665541 111    0111      


Q ss_pred             cCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhccc---CCCCEEeCCCCc
Q 041683          478 TDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNL---QGLQSLNLSHNL  554 (743)
Q Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~N~  554 (743)
                                                              ++.|++||+++|++++..|..+..+   ++|++|+|++|+
T Consensus       223 ----------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          223 ----------------------------------------GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             ----------------------------------------TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             ----------------------------------------CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence                                                    2224666666666665555555554   688888888888


Q ss_pred             CcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccc
Q 041683          555 LTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG  605 (743)
Q Consensus       555 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  605 (743)
                      ++ .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       263 l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          263 LE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            88 6677664  7888888888888854 33 5677888888888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=6.7e-22  Score=195.07  Aligned_cols=198  Identities=19%  Similarity=0.243  Sum_probs=169.8

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCcc-ccccCCcccCCCCCCCEEeCCC-CcCcccCchhHHhcccCCcE
Q 041683          352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI-LSGIIPTSFKNFSSLEVLDLGE-NELVGSIPSWIGERFSILKI  429 (743)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~~l~~L~~  429 (743)
                      ++|++|++++|++++..+..|.++++|++|++++|. ++.+.+..|.++++|++|++++ |.++ .++...+..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            489999999999998878799999999999999997 9888888999999999999999 9998 666555557999999


Q ss_pred             EEccCCcCcccCCccccCCCCcc---EEEccCC-ccccccCccccccccccccCccchhhhhhccccCCCCcccccccce
Q 041683          430 LNLRSNKFHGDFPIQLCGLAFLQ---ILDVASN-SLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASL  505 (743)
Q Consensus       430 L~L~~n~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (743)
                      |++++|++.+ +|. |..+++|+   +|++++| .+.+..+..|.+++.|                              
T Consensus       110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L------------------------------  157 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE------------------------------  157 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS------------------------------
T ss_pred             EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc------------------------------
Confidence            9999999996 665 88888888   9999999 9987666677766664                              


Q ss_pred             eeeceeeehhccccccc-EEEccCCcCcccCchhhcccCCCCEEeCCCCc-CcccCCCCCCCC-CCccEEECcCCcCCCC
Q 041683          506 VMKGVLVEYNSILNLVR-SIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNL-LTGRIPDNIGVM-RSIESLDLSANQLSGQ  582 (743)
Q Consensus       506 ~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~  582 (743)
                                      + +|++++|+++...+..|.. ++|++|++++|+ +++..+..|..+ ++|+.|++++|++++.
T Consensus       158 ----------------~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l  220 (239)
T 2xwt_C          158 ----------------TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL  220 (239)
T ss_dssp             ----------------EEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC
T ss_pred             ----------------eeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC
Confidence                            8 9999999999555555555 899999999995 997777889999 9999999999999954


Q ss_pred             CCccccCcCCCCeeeCcCCc
Q 041683          583 IPQSMSNLSFLNHLNLSNNN  602 (743)
Q Consensus       583 ~p~~l~~l~~L~~L~ls~N~  602 (743)
                       |..  .+++|+.|+++++.
T Consensus       221 -~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          221 -PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             -CCT--TCTTCSEEECTTC-
T ss_pred             -Chh--HhccCceeeccCcc
Confidence             443  67889999998874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=2.9e-22  Score=209.03  Aligned_cols=250  Identities=18%  Similarity=0.180  Sum_probs=201.3

Q ss_pred             CCCEEECCCCCCCCCCchhhcCC--CCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcc-cchhccCCCCCC
Q 041683           19 SLKYLDLSSNELNSTVLGWLSKV--NDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGK-IPTSFGKLCKLT   95 (743)
Q Consensus        19 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~-~~~~l~~l~~L~   95 (743)
                      .++.++++++.+.   +..+..+  +++++|++++|.+.+..+.  +.++++|++|+++ ++.+.+. ++..+..+++|+
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~-~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECT-TCEECHHHHHHHHTTBCCCS
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEcc-CCCcCHHHHHHHHhhCCCCC
Confidence            4789999999875   5667777  8999999999999866554  6689999999999 5667655 788899999999


Q ss_pred             EEEccCCcCcccchhhhhcccccccCCccEEEccCC-cCcc-cchhhccCCCCCCEEECcCc-cCccc-cchhccCCC-C
Q 041683           96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSS-QIFG-HLTNQLRRFKRLNSLDLSNT-ILDGS-IPFSLGQIS-N  170 (743)
Q Consensus        96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n-~~~~-~~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~-~  170 (743)
                      +|++++|.+++..+..+..++     +|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~-----~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNS-----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCT-----TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             EEeCcCcccCHHHHHHHhcCC-----CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            999999999887888887777     9999999999 5765 36777889999999999999 88864 577788899 9


Q ss_pred             CCEEEccCC--CCc-cccChhhhcCCCCCCEEECCCCc-ceeecCCCCCCCccccEEEcCCCc-CCCCcchhhcCCCCCC
Q 041683          171 LEYLDLSNN--KLN-GTVSEIHFVNLTKLAFFRANGNS-LIFKINPNWVPPFQLTVLELRSCH-LGPRFPLWLQSQRELN  245 (743)
Q Consensus       171 L~~L~L~~n--~l~-~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~l~~L~  245 (743)
                      |++|++++|  .++ +.++. .+..+++|++|++++|. ++......+..+++|+.|++++|. +.......+..+++|+
T Consensus       197 L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  275 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence            999999999  454 34444 57789999999999998 666666678888999999999995 3333333678899999


Q ss_pred             EEEccCCCCccccChhhhhhc-ccCceEecccCccccCCCC
Q 041683          246 DLDISSTRISAKIPRGFWNSI-YQYFYLNISGNQIYGGIPK  285 (743)
Q Consensus       246 ~L~l~~n~i~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~  285 (743)
                      .|++++| ++.    ..+..+ ..+..|++++|++++..|.
T Consensus       276 ~L~l~~~-i~~----~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          276 TLQVFGI-VPD----GTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             EEECTTS-SCT----TCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             EEeccCc-cCH----HHHHHHHhhCcceEEecccCccccCC
Confidence            9999999 433    222222 3477778899999887765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=1.4e-22  Score=211.41  Aligned_cols=231  Identities=16%  Similarity=0.224  Sum_probs=159.2

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS-LPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5688888888888766554 45678888888888887754 666677788888888888887777777777888888888


Q ss_pred             CCCC-cCccc-CchhHHhcccCCcEEEccCC-cCccc-CCccccCCC-CccEEEccCCc--cc-cccCcccccccccccc
Q 041683          407 LGEN-ELVGS-IPSWIGERFSILKILNLRSN-KFHGD-FPIQLCGLA-FLQILDVASNS--LS-GTIPRCINNLSAMAIT  478 (743)
Q Consensus       407 Ls~n-~i~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~Ls~N~--l~-~~~p~~~~~l~~L~~~  478 (743)
                      +++| .+++. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++|++++|.  ++ +.+|..+..+      
T Consensus       149 L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~------  221 (336)
T 2ast_B          149 LSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC------  221 (336)
T ss_dssp             CTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC------
T ss_pred             CCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC------
Confidence            8888 56542 34333 36788888888888 77643 455677777 88888888884  33 2233333333      


Q ss_pred             CccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCc-CcccCchhhcccCCCCEEeCCCCc-Cc
Q 041683          479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNI-FSGEIPVEVTNLQGLQSLNLSHNL-LT  556 (743)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~  556 (743)
                                                              ++|++|++++|. +++..+..+..+++|++|++++|. ++
T Consensus       222 ----------------------------------------~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  261 (336)
T 2ast_B          222 ----------------------------------------PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  261 (336)
T ss_dssp             ----------------------------------------TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ----------------------------------------CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence                                                    335788888887 666667777788888888888884 32


Q ss_pred             ccCCCCCCCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCcccccCCCC
Q 041683          557 GRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       557 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~  610 (743)
                      ......++.+++|+.|++++| ++   .+.+..+ ..|+.|++++|++++..|..
T Consensus       262 ~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          262 PETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence            222224677788888888887 33   2234444 34777778888888777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.7e-21  Score=199.61  Aligned_cols=193  Identities=24%  Similarity=0.395  Sum_probs=119.9

Q ss_pred             CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683          350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI  429 (743)
Q Consensus       350 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~  429 (743)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+. .++ .+ ..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~-~~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AI-AGLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GG-TTCTTCCE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hh-cCCCCCCE
Confidence            44555566666655553 22 35555666666666666554333  556666666666666655 333 22 24566666


Q ss_pred             EEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeec
Q 041683          430 LNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG  509 (743)
Q Consensus       430 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  509 (743)
                      |++++|++.+. + .+..+++|+.|++++|++.+..+  +..++                                    
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~------------------------------------  151 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLT------------------------------------  151 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCT------------------------------------
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCC------------------------------------
Confidence            66666666542 2 25666666666666666653322  32222                                    


Q ss_pred             eeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccC
Q 041683          510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSN  589 (743)
Q Consensus       510 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  589 (743)
                                .|+.|++++|++++..+  +..+++|+.|++++|++++..+  +..+++|++|++++|++++..|  +..
T Consensus       152 ----------~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~  215 (308)
T 1h6u_A          152 ----------NLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN  215 (308)
T ss_dssp             ----------TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred             ----------CccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC
Confidence                      24677777777764333  7777888888888888874433  7778888888888888875543  677


Q ss_pred             cCCCCeeeCcCCcccc
Q 041683          590 LSFLNHLNLSNNNLVG  605 (743)
Q Consensus       590 l~~L~~L~ls~N~l~~  605 (743)
                      +++|+.|++++|++++
T Consensus       216 l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          216 TSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEEccCCeeec
Confidence            8888888888888865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=3.9e-21  Score=196.96  Aligned_cols=192  Identities=22%  Similarity=0.332  Sum_probs=164.5

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      +++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            5689999999999985 34 68899999999999999996544  89999999999999999865  3689999999999


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI  486 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  486 (743)
                      +++|.+. .++.  +..+++|++|++++|.+.+..+  +..+++|+.|++++|++.+..+  +..++.            
T Consensus       114 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------  174 (308)
T 1h6u_A          114 LTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK------------  174 (308)
T ss_dssp             CTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT------------
T ss_pred             CCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC------------
Confidence            9999998 5664  3479999999999999996543  8899999999999999985433  444444            


Q ss_pred             hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCC
Q 041683          487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM  566 (743)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  566 (743)
                                                        |+.|++++|++++..+  +..+++|++|+|++|++++..  .+..+
T Consensus       175 ----------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l  216 (308)
T 1h6u_A          175 ----------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANT  216 (308)
T ss_dssp             ----------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTC
T ss_pred             ----------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCC
Confidence                                              6999999999986544  889999999999999999655  38899


Q ss_pred             CCccEEECcCCcCCC
Q 041683          567 RSIESLDLSANQLSG  581 (743)
Q Consensus       567 ~~L~~L~Ls~N~l~~  581 (743)
                      ++|+.|++++|++++
T Consensus       217 ~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          217 SNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCCEEEEEEEEEEC
T ss_pred             CCCCEEEccCCeeec
Confidence            999999999999985

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=201.40  Aligned_cols=225  Identities=21%  Similarity=0.234  Sum_probs=171.6

Q ss_pred             CCCEEECCCCcCcccCCc---cccCCCCCcEEEccCccccccCCccc--CCCCCCCEEeCCCCcCcccCch---hHHhcc
Q 041683          353 RLRALNLGHNNFTGSLPM---SIGTLSSLLSLNLRNNILSGIIPTSF--KNFSSLEVLDLGENELVGSIPS---WIGERF  424 (743)
Q Consensus       353 ~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~Ls~n~i~~~~~~---~~~~~l  424 (743)
                      .++.+.+.++.++...-.   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+.   .....+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            466677776665421100   12234568888888888887777777  7888888888888888754441   222268


Q ss_pred             cCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccc--c--CccccccccccccCccchhhhhhccccCCCCcccc
Q 041683          425 SILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGT--I--PRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIF  500 (743)
Q Consensus       425 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~  500 (743)
                      ++|++|++++|++.+..+..|..+++|++|++++|++.+.  +  +.++..                             
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~-----------------------------  195 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK-----------------------------  195 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS-----------------------------
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc-----------------------------
Confidence            8999999999999988888999999999999999998642  1  112233                             


Q ss_pred             cccceeeeceeeehhcccccccEEEccCCcCcccCch----hhcccCCCCEEeCCCCcCcccCCCCCCCC---CCccEEE
Q 041683          501 EDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPV----EVTNLQGLQSLNLSHNLLTGRIPDNIGVM---RSIESLD  573 (743)
Q Consensus       501 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~  573 (743)
                                       +++|++|++++|+++. ++.    .+..+++|++|+|++|++++..|..+..+   ++|++|+
T Consensus       196 -----------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~  257 (310)
T 4glp_A          196 -----------------FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLN  257 (310)
T ss_dssp             -----------------SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEE
T ss_pred             -----------------CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEE
Confidence                             3346999999999973 232    35788999999999999998888888777   6999999


Q ss_pred             CcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCCCCCC
Q 041683          574 LSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCG  628 (743)
Q Consensus       574 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~  628 (743)
                      +++|+++ .+|..+.  ++|++||+++|++++. |....++.++.+++.+|.+..
T Consensus       258 Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          258 LSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred             CCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence            9999999 6677664  8999999999999974 444567888889999987653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.1e-20  Score=187.87  Aligned_cols=181  Identities=21%  Similarity=0.240  Sum_probs=149.4

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  407 (743)
                      ...++++++++.+.. +|..+.  +.++.|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            457899999999984 555444  68999999999999888889999999999999999999998889999999999999


Q ss_pred             CCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhh
Q 041683          408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVIL  487 (743)
Q Consensus       408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  487 (743)
                      ++|.+. .++...+..+++|++|++++|++.+..+..|..+++|+.|++++|++.+                        
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------  145 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------------------------  145 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc------------------------
Confidence            999998 6665555689999999999999997766667888888888887777763                        


Q ss_pred             hccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCC
Q 041683          488 YSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR  567 (743)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  567 (743)
                                                                    ..+..|..+++|++|+|++|++++..+..|..++
T Consensus       146 ----------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          146 ----------------------------------------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG  179 (251)
T ss_dssp             ----------------------------------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ----------------------------------------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence                                                          2333466677777888888888766666777788


Q ss_pred             CccEEECcCCcCCCC
Q 041683          568 SIESLDLSANQLSGQ  582 (743)
Q Consensus       568 ~L~~L~Ls~N~l~~~  582 (743)
                      +|+.|++++|++++.
T Consensus       180 ~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          180 KLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCCEEECCSCCBCTT
T ss_pred             CCCEEEeeCCceeCC
Confidence            888888888888755

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.6e-20  Score=196.43  Aligned_cols=237  Identities=17%  Similarity=0.110  Sum_probs=178.3

Q ss_pred             CCCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCC
Q 041683            2 SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELG   81 (743)
Q Consensus         2 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~   81 (743)
                      ++++++ .+|..+  .+++++|+|++|+|+.+.+++|.++++|++|+|++|.+.+.++..+|.++++++++...+++.+.
T Consensus        17 ~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~   93 (350)
T 4ay9_X           17 QESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   93 (350)
T ss_dssp             ESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred             cCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence            456777 567666  36899999999999888888999999999999999998767887789999998865544377888


Q ss_pred             cccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccC-CcCcccchhhccCCC-CCCEEECcCccCcc
Q 041683           82 GKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGS-SQIFGHLTNQLRRFK-RLNSLDLSNTILDG  159 (743)
Q Consensus        82 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~  159 (743)
                      ...|.+|..+++|++|++++|.+....+..+....     ++..|++.+ +.+....+..|..+. .+++|++++|.|+.
T Consensus        94 ~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL-----QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS-----SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             ccCchhhhhccccccccccccccccCCchhhcccc-----hhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            88888999999999999999998765444443333     678888865 566666666777764 68899999999985


Q ss_pred             ccchhccCCCCCCEEEccC-CCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhh
Q 041683          160 SIPFSLGQISNLEYLDLSN-NKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL  238 (743)
Q Consensus       160 ~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  238 (743)
                      + |.......+|++|++++ |.++ .++...|..+++|++|++++|+++...+..+.   +|+.|.+.++.--..+|. +
T Consensus       169 i-~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-l  242 (350)
T 4ay9_X          169 I-HNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-L  242 (350)
T ss_dssp             E-CTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-T
T ss_pred             C-ChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-c
Confidence            4 44444567899999975 5555 78877889999999999999988766554443   455555555443334553 6


Q ss_pred             cCCCCCCEEEccCC
Q 041683          239 QSQRELNDLDISST  252 (743)
Q Consensus       239 ~~l~~L~~L~l~~n  252 (743)
                      ..+++|+.+++.++
T Consensus       243 ~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          243 EKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCSCCEEECSCH
T ss_pred             hhCcChhhCcCCCC
Confidence            77788888887654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=6.7e-20  Score=191.64  Aligned_cols=243  Identities=14%  Similarity=0.144  Sum_probs=185.0

Q ss_pred             CCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCC-ccccCCCCCcE
Q 041683          302 GPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLP-MSIGTLSSLLS  380 (743)
Q Consensus       302 ~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~  380 (743)
                      +..++++++.++. +|..+      .+++++|+|++|+|+.+.+++|.++++|++|+|++|++.+.+| .+|.+++++++
T Consensus        11 ~~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           11 NRVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             TTEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             CCEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            3478888888874 44333      3579999999999998777889999999999999999876544 57889988775


Q ss_pred             -EEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccC-CcCcccCCccccCCC-CccEEEcc
Q 041683          381 -LNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRS-NKFHGDFPIQLCGLA-FLQILDVA  457 (743)
Q Consensus       381 -L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls  457 (743)
                       +.+++|+++.+.|..|..+++|++|++++|++. .+|...+....++..|++.+ +.+....+..|..+. .++.|+++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence             666779999888999999999999999999998 55554443566788888866 567766666777765 58899999


Q ss_pred             CCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccC-CcCcccCc
Q 041683          458 SNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSK-NIFSGEIP  536 (743)
Q Consensus       458 ~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~  536 (743)
                      +|++....+..|. ...                                              ++++++++ |.++...+
T Consensus       163 ~N~i~~i~~~~f~-~~~----------------------------------------------L~~l~l~~~n~l~~i~~  195 (350)
T 4ay9_X          163 KNGIQEIHNSAFN-GTQ----------------------------------------------LDELNLSDNNNLEELPN  195 (350)
T ss_dssp             SSCCCEECTTSST-TEE----------------------------------------------EEEEECTTCTTCCCCCT
T ss_pred             cccccCCChhhcc-ccc----------------------------------------------hhHHhhccCCcccCCCH
Confidence            9999854444443 222                                              58899975 66765555


Q ss_pred             hhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcc
Q 041683          537 VEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL  603 (743)
Q Consensus       537 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l  603 (743)
                      ..|.++++|++|||++|+|+...+..   +.+|+.|.+.++.-...+|. +..+++|+.++++++.-
T Consensus       196 ~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          196 DVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSH  258 (350)
T ss_dssp             TTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHH
T ss_pred             HHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCcc
Confidence            67899999999999999999444433   45666666666554446774 78899999999987643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=3.3e-20  Score=179.79  Aligned_cols=158  Identities=22%  Similarity=0.208  Sum_probs=128.4

Q ss_pred             CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCC-ccccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683          403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP-IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY  481 (743)
Q Consensus       403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  481 (743)
                      +.+++++|.++ .+|..+   ...+++|++++|++.+..+ ..|..+++|+.|++++|++++..+..|..++.       
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~-------   82 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-------   82 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTT-------
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCC-------
Confidence            46777777765 566543   2346777777777776543 34777888888888888887666666666555       


Q ss_pred             chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683          482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD  561 (743)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  561 (743)
                                                             |++|++++|++++..+..|..+++|++|+|++|++++..|.
T Consensus        83 ---------------------------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  123 (220)
T 2v70_A           83 ---------------------------------------VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND  123 (220)
T ss_dssp             ---------------------------------------CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred             ---------------------------------------CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence                                                   48888888888878888899999999999999999988899


Q ss_pred             CCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       562 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                      .|..+++|+.|+|++|++++..|..|..+++|+.|++++|+++|.++-.
T Consensus       124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            9999999999999999999998999999999999999999999987744

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.1e-19  Score=175.08  Aligned_cols=82  Identities=17%  Similarity=0.123  Sum_probs=50.7

Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                      ++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+.+.       +++|+.|+++.|
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n  175 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWIN  175 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHH
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHH
Confidence            3334444444433344456666777777777777755555566777777777777766532       346677777777


Q ss_pred             cccccCCCC
Q 041683          602 NLVGKIPSS  610 (743)
Q Consensus       602 ~l~~~~p~~  610 (743)
                      .++|.+|..
T Consensus       176 ~~~g~ip~~  184 (208)
T 2o6s_A          176 KHSGVVRNS  184 (208)
T ss_dssp             HCTTTBBCT
T ss_pred             hCCceeecc
Confidence            777777753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.1e-19  Score=172.98  Aligned_cols=128  Identities=23%  Similarity=0.248  Sum_probs=60.0

Q ss_pred             cEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683          331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN  410 (743)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n  410 (743)
                      +.++.+++.+.. +|..+  .++|++|++++|++++..+..|..+++|++|++++|.++++.+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            344555555442 22221  235555555555555444444555555555555555555444444455555555555555


Q ss_pred             cCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc
Q 041683          411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       411 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  462 (743)
                      .+. .++...+..+++|++|++++|++.+..+..|..+++|++|++++|++.
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           87 QLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            554 333332223444444444444444333333444444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=3.8e-19  Score=172.34  Aligned_cols=156  Identities=19%  Similarity=0.224  Sum_probs=128.5

Q ss_pred             CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683          403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD  482 (743)
Q Consensus       403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  482 (743)
                      +.++++++.++ .+|..+   .++++.|++++|++.+..+..|..+++|+.|+|++|++.+..|..|.+++.|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            46677777776 566543   2567788888888876666678888888888888888887777777766654       


Q ss_pred             hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683          483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN  562 (743)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  562 (743)
                                                             ++|+|++|+++...+..|.++++|++|+|++|++++..|..
T Consensus        83 ---------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~  123 (220)
T 2v9t_B           83 ---------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA  123 (220)
T ss_dssp             ---------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ---------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHH
Confidence                                                   88888888888666667889999999999999999888999


Q ss_pred             CCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCC
Q 041683          563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIP  608 (743)
Q Consensus       563 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  608 (743)
                      |..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..+
T Consensus       124 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            9999999999999999998888889999999999999999998654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=7.1e-19  Score=193.11  Aligned_cols=115  Identities=30%  Similarity=0.402  Sum_probs=71.2

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG  408 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  408 (743)
                      +++.|++++|.+.+ +|..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            67777777777775 44433  256777777777776 444   335677777777777765 343 443  67777777


Q ss_pred             CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCcccc
Q 041683          409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG  463 (743)
Q Consensus       409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  463 (743)
                      +|.+++ +|.    .+++|+.|++++|.+++ +|.   .+++|+.|++++|++++
T Consensus       129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~  174 (571)
T 3cvr_A          129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF  174 (571)
T ss_dssp             SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC
Confidence            777663 554    35666666666666664 333   34566666666666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.4e-18  Score=169.61  Aligned_cols=158  Identities=23%  Similarity=0.218  Sum_probs=129.6

Q ss_pred             CCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683          402 LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY  481 (743)
Q Consensus       402 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  481 (743)
                      -+.++.+++.+. .+|..+   .++|++|++++|.+.+..+..|..+++|+.|++++|++....+..|..++.       
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~-------   89 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------   89 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCC-------
Confidence            456777777776 666543   367888888888888777777888888888888888887555555555555       


Q ss_pred             chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683          482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD  561 (743)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  561 (743)
                                                             |+.|++++|++++..+..|..+++|++|+|++|+++ .+|.
T Consensus        90 ---------------------------------------L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~  129 (229)
T 3e6j_A           90 ---------------------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPR  129 (229)
T ss_dssp             ---------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCT
T ss_pred             ---------------------------------------cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCc
Confidence                                                   488888888888777777899999999999999999 8888


Q ss_pred             CCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       562 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                      .+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.++..
T Consensus       130 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  178 (229)
T 3e6j_A          130 GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI  178 (229)
T ss_dssp             TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred             ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence            9999999999999999999877788999999999999999999987743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=2e-18  Score=189.60  Aligned_cols=118  Identities=29%  Similarity=0.428  Sum_probs=97.2

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  407 (743)
                      ++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence            57899999999998 455   457899999999999996 665 654  99999999999987 444   6789999999


Q ss_pred             CCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCc
Q 041683          408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR  467 (743)
Q Consensus       408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  467 (743)
                      ++|.++ .+|.    .+++|++|++++|++++ +|. |.  ++|+.|++++|+|+ .+|.
T Consensus       148 s~N~l~-~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          148 DNNQLT-MLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred             CCCccC-cCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh
Confidence            999998 4776    47899999999999996 666 65  88999999999887 4444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.3e-18  Score=176.45  Aligned_cols=186  Identities=23%  Similarity=0.324  Sum_probs=106.7

Q ss_pred             EECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcC
Q 041683          333 LKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENEL  412 (743)
Q Consensus       333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i  412 (743)
                      +.+..+.+.+..  .+..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+
T Consensus        29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            344444444322  234456666777776666633 2 35566666666666666665433  66666666666666666


Q ss_pred             cccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhcccc
Q 041683          413 VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLR  492 (743)
Q Consensus       413 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  492 (743)
                      . .++. + ..+++|++|++++|++.+.  ..+..+++|+.|++++|++                               
T Consensus       103 ~-~~~~-l-~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l-------------------------------  146 (291)
T 1h6t_A          103 K-DLSS-L-KDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKI-------------------------------  146 (291)
T ss_dssp             C-CGGG-G-TTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCC-------------------------------
T ss_pred             C-CChh-h-ccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcC-------------------------------
Confidence            5 3332 2 2455555555555555532  2344445555555555544                               


Q ss_pred             CCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEE
Q 041683          493 SEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESL  572 (743)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  572 (743)
                                                             ++.  ..+..+++|++|++++|++++..|  +..+++|+.|
T Consensus       147 ---------------------------------------~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          147 ---------------------------------------TDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL  183 (291)
T ss_dssp             ---------------------------------------CCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             ---------------------------------------Ccc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence                                                   332  345566667777777777764433  6667777777


Q ss_pred             ECcCCcCCCCCCccccCcCCCCeeeCcCCcccc
Q 041683          573 DLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG  605 (743)
Q Consensus       573 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  605 (743)
                      ++++|++++ +| .+..+++|+.|++++|+++.
T Consensus       184 ~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          184 YLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             ECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            777777764 33 36667777777777777664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=4.6e-18  Score=172.40  Aligned_cols=173  Identities=23%  Similarity=0.382  Sum_probs=124.8

Q ss_pred             CCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCC
Q 041683           14 LGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCK   93 (743)
Q Consensus        14 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~   93 (743)
                      +..+++|++|++++|.+...  ..+..+++|++|++++|.++ .++.  +.++++|++|+++ +|.+.+ + ..+..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~-~n~l~~-~-~~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLD-ENKVKD-L-SSLKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCC-G-GGGTTCTT
T ss_pred             hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECC-CCcCCC-C-hhhccCCC
Confidence            45677888888888887665  23777888888888888887 4443  7788888888888 555654 2 34778888


Q ss_pred             CCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCE
Q 041683           94 LTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY  173 (743)
Q Consensus        94 L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  173 (743)
                      |++|++++|.++..  ..+..++     +|++|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|++
T Consensus       114 L~~L~L~~n~i~~~--~~l~~l~-----~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          114 LKSLSLEHNGISDI--NGLVHLP-----QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             CCEEECTTSCCCCC--GGGGGCT-----TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             CCEEECCCCcCCCC--hhhcCCC-----CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence            88888888877663  3455555     788888888877654  457777888888888888875544  777788888


Q ss_pred             EEccCCCCccccChhhhcCCCCCCEEECCCCccee
Q 041683          174 LDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIF  208 (743)
Q Consensus       174 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~  208 (743)
                      |++++|.++ .++.  +..+++|+.|++++|++..
T Consensus       183 L~L~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          183 LYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EECCSSCCC-BCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred             EECCCCcCC-CChh--hccCCCCCEEECcCCcccC
Confidence            888888776 4443  6777777777777776653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.1e-18  Score=183.23  Aligned_cols=179  Identities=26%  Similarity=0.218  Sum_probs=107.0

Q ss_pred             CEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccC-CCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEcc
Q 041683          355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFK-NFSSLEVLDLGENELVGSIPSWIGERFSILKILNLR  433 (743)
Q Consensus       355 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~  433 (743)
                      +.++++++.++ .+|..+.  +.++.|+|++|.++++.+..|. .+++|++|+|++|++. .++...+..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            56777777777 3454442  3567777777777766666665 6666666666666665 3332222345555555555


Q ss_pred             CCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeee
Q 041683          434 SNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVE  513 (743)
Q Consensus       434 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  513 (743)
                      +|++.+..+..|..+++|+.|+|                                                         
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L---------------------------------------------------------  119 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLL---------------------------------------------------------  119 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEEC---------------------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEEC---------------------------------------------------------
Confidence            55555444444445555555544                                                         


Q ss_pred             hhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCC---CCCCCccEEECcCCcCCCCCCccccCc
Q 041683          514 YNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI---GVMRSIESLDLSANQLSGQIPQSMSNL  590 (743)
Q Consensus       514 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l  590 (743)
                                   ++|++++..|..|.++++|+.|+|++|++++..+..|   ..+++|+.|+|++|+|+...+..+..+
T Consensus       120 -------------~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  186 (361)
T 2xot_A          120 -------------YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL  186 (361)
T ss_dssp             -------------CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHS
T ss_pred             -------------CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhc
Confidence                         4555544555566667777777777777774333334   457777777777777775555566666


Q ss_pred             CC--CCeeeCcCCcccccC
Q 041683          591 SF--LNHLNLSNNNLVGKI  607 (743)
Q Consensus       591 ~~--L~~L~ls~N~l~~~~  607 (743)
                      +.  |+.|++++|++.|.+
T Consensus       187 ~~~~l~~l~l~~N~~~C~C  205 (361)
T 2xot_A          187 PAWVKNGLYLHNNPLECDC  205 (361)
T ss_dssp             CHHHHTTEECCSSCEECCH
T ss_pred             cHhhcceEEecCCCccCCc
Confidence            65  377777887777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=3.5e-18  Score=189.94  Aligned_cols=124  Identities=24%  Similarity=0.297  Sum_probs=52.5

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  407 (743)
                      ++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEe
Confidence            3444444444444422 1 24444444444444444443222  44444444444444444432  13444444444444


Q ss_pred             CCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc
Q 041683          408 GENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  462 (743)
                      ++|.+. .++. + ..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++.
T Consensus       117 s~N~l~-~l~~-l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          117 EHNGIS-DING-L-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             TTSCCC-CCGG-G-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCC
T ss_pred             cCCCCC-CCcc-c-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCC
Confidence            444444 2221 1 1344444444444444432  23444444444444444444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2.5e-17  Score=159.48  Aligned_cols=156  Identities=15%  Similarity=0.184  Sum_probs=114.5

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR  100 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~  100 (743)
                      +++++++|.++.+ |..+  .+.+++|+|++|.+++..+...|.++++|++|+++ ++.+++..+.+|.++++|++|+++
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEECC
Confidence            5788888888654 4333  24567888888888854454467888888888888 667777767778888888888888


Q ss_pred             CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC
Q 041683          101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK  180 (743)
Q Consensus       101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  180 (743)
                      +|.+++..+..+..++     +|++|+|++|++.+..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|.
T Consensus        90 ~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           90 SNRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SSCCCCCCGGGGTTCS-----SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCccCccCHhHhcCCc-----CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            8887776666666666     77777777777777777777777777777777777776667777777777777777777


Q ss_pred             Ccccc
Q 041683          181 LNGTV  185 (743)
Q Consensus       181 l~~~~  185 (743)
                      +....
T Consensus       165 l~c~c  169 (220)
T 2v70_A          165 FNCNC  169 (220)
T ss_dssp             EECSG
T ss_pred             CcCCC
Confidence            66433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.8e-17  Score=184.11  Aligned_cols=183  Identities=22%  Similarity=0.372  Sum_probs=140.4

Q ss_pred             CCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683            3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG   82 (743)
Q Consensus         3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~   82 (743)
                      .+.+....+  +..+++|++|++++|.+..+.  .|..+++|++|+|++|.++ .++.  +..+++|++|+|+ +|.+.+
T Consensus        30 ~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~Ls-~N~l~~  101 (605)
T 1m9s_A           30 KKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFLD-ENKIKD  101 (605)
T ss_dssp             CSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEECC-SSCCCC
T ss_pred             CCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEECc-CCCCCC
Confidence            444444332  567888888999988886653  4888899999999999887 4453  7888899999998 556654


Q ss_pred             ccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccc
Q 041683           83 KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIP  162 (743)
Q Consensus        83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  162 (743)
                       + ..+..+++|++|+|++|.+...  ..+..++     +|+.|+|++|.+.+.  ..+..+++|++|+|++|.+++..|
T Consensus       102 -l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~-----~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A          102 -L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLP-----QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             -C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCT-----TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             -C-hhhccCCCCCEEEecCCCCCCC--ccccCCC-----ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence             2 3688888899999988888763  3455555     888888888888765  568888888888888888886655


Q ss_pred             hhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceee
Q 041683          163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFK  209 (743)
Q Consensus       163 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~  209 (743)
                        +..+++|++|+|++|++. .++  .+..+++|+.|++++|.+...
T Consensus       171 --l~~l~~L~~L~Ls~N~i~-~l~--~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCC-BCG--GGTTCTTCSEEECCSEEEECC
T ss_pred             --hccCCCCCEEECcCCCCC-CCh--HHccCCCCCEEEccCCcCcCC
Confidence              888888888888888887 444  478888888888888887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=4e-17  Score=159.22  Aligned_cols=154  Identities=23%  Similarity=0.302  Sum_probs=92.9

Q ss_pred             CEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccC
Q 041683          355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRS  434 (743)
Q Consensus       355 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~  434 (743)
                      +.++.+++.+. .+|..+.  ++|++|++++|.++++.+..|..+++|++|++++|++. .+|...+..+++|++|+|++
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence            34555555554 3333222  45555555555555555555555566666666666554 44433333455555555555


Q ss_pred             CcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeeh
Q 041683          435 NKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEY  514 (743)
Q Consensus       435 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (743)
                      |++++..+..|..+++|+.|++++|++.                                                    
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~----------------------------------------------------  125 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT----------------------------------------------------  125 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC----------------------------------------------------
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc----------------------------------------------------
Confidence            5555444444555555555555555554                                                    


Q ss_pred             hcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCC
Q 041683          515 NSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQI  583 (743)
Q Consensus       515 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  583 (743)
                                         .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|.+.+..
T Consensus       126 -------------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          126 -------------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             -------------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             -------------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence                               44555667788888888888888666677888888888888888887543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.5e-17  Score=174.47  Aligned_cols=177  Identities=21%  Similarity=0.183  Sum_probs=143.5

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCccccc-CCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLE-NLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSM   99 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L   99 (743)
                      +++++++++++.+ |..+.  +.+++|+|++|.++ .++...|. ++++|++|+|+ +|.+++..+.+|.++++|++|++
T Consensus        21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~L   95 (361)
T 2xot_A           21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDL   95 (361)
T ss_dssp             TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEEC
Confidence            6888998888664 43332  45888999999998 45544676 88999999998 67787777788899999999999


Q ss_pred             cCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhc---cCCCCCCEEEc
Q 041683          100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL---GQISNLEYLDL  176 (743)
Q Consensus       100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~L  176 (743)
                      ++|+++...+..+..+.     +|++|+|++|.+....+..|..+++|++|+|++|.+++..+..|   ..+++|++|+|
T Consensus        96 s~N~l~~~~~~~~~~l~-----~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A           96 SSNHLHTLDEFLFSDLQ-----ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             CSSCCCEECTTTTTTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             CCCcCCcCCHHHhCCCc-----CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            99998876666777777     89999999999988888899999999999999999996555555   56899999999


Q ss_pred             cCCCCccccChhhhcCCCC--CCEEECCCCccee
Q 041683          177 SNNKLNGTVSEIHFVNLTK--LAFFRANGNSLIF  208 (743)
Q Consensus       177 ~~n~l~~~~~~~~~~~l~~--L~~L~l~~n~~~~  208 (743)
                      ++|+++ .++...+..++.  ++.|++++|++..
T Consensus       171 ~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          171 SSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCCCC-ccCHHHhhhccHhhcceEEecCCCccC
Confidence            999998 666667888887  4889999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=8.7e-18  Score=158.96  Aligned_cols=111  Identities=23%  Similarity=0.322  Sum_probs=81.9

Q ss_pred             ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      |++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|++|++++
T Consensus        56 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence            36677777777767777788888888888888888877777788888888888888888888888888888888888888


Q ss_pred             CcccccCCCCcccCCCCCccccCC-CCCCCCC
Q 041683          601 NNLVGKIPSSTQLQSFGASSFAGN-DLCGDPL  631 (743)
Q Consensus       601 N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~  631 (743)
                      |+++|.++.......+....+.++ ..|+.|.
T Consensus       136 N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          136 NPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             CCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            888887764332222222234444 5565543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2e-17  Score=157.46  Aligned_cols=153  Identities=18%  Similarity=0.256  Sum_probs=86.1

Q ss_pred             cCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhccccc
Q 041683           39 SKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSAC  118 (743)
Q Consensus        39 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~  118 (743)
                      ..+++|++|++++|.++ .++  .+..+++|++|+++ ++.+.  .+..+..+++|++|++++|.+++..+..+..++  
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~-~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~--  112 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTIN-NIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT--  112 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEE-SCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT--
T ss_pred             hhcCCccEEeccCCCcc-ChH--HHhcCCCCCEEEcc-CCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC--
Confidence            44455555666655555 444  25555566666665 33332  223455566666666666665554444455444  


Q ss_pred             ccCCccEEEccCCcCcccchhhccCCCCCCEEECcCcc-CccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCC
Q 041683          119 VANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTI-LDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLA  197 (743)
Q Consensus       119 ~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  197 (743)
                         +|++|++++|.+.+..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|+++ .++  .+..+++|+
T Consensus       113 ---~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~--~l~~l~~L~  184 (197)
T 4ezg_A          113 ---SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR--GIEDFPKLN  184 (197)
T ss_dssp             ---TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT--TGGGCSSCC
T ss_pred             ---CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH--HhccCCCCC
Confidence               56666666666655555666666666666666665 44 333 4666666666666666665 333  356666666


Q ss_pred             EEECCCCcce
Q 041683          198 FFRANGNSLI  207 (743)
Q Consensus       198 ~L~l~~n~~~  207 (743)
                      +|++++|++.
T Consensus       185 ~L~l~~N~i~  194 (197)
T 4ezg_A          185 QLYAFSQTIG  194 (197)
T ss_dssp             EEEECBC---
T ss_pred             EEEeeCcccC
Confidence            6666666653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=5e-17  Score=157.34  Aligned_cols=151  Identities=17%  Similarity=0.241  Sum_probs=76.2

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR  100 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~  100 (743)
                      +.+++++++++.+. ..+.  ++|++|++++|.++ .++...|.++++|++|+|+ +|.+.+..|.+|.++++|++|+++
T Consensus        14 ~~v~c~~~~l~~iP-~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           14 NIVDCRGKGLTEIP-TNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TEEECTTSCCSSCC-SSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEEEcCCCCcCcCC-CccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECC
Confidence            45666666664432 2222  46666666666666 3443356666666666666 455555555566666555555555


Q ss_pred             CCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCC
Q 041683          101 FTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK  180 (743)
Q Consensus       101 ~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  180 (743)
                      +|.++...+..+..++     +|++|+|++|++.+..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.
T Consensus        89 ~N~l~~l~~~~f~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           89 GNKITELPKSLFEGLF-----SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             SSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCCccCHhHccCCC-----CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            5555433333333333     44444444444444444444444444444444444443333334444444444444444


Q ss_pred             C
Q 041683          181 L  181 (743)
Q Consensus       181 l  181 (743)
                      +
T Consensus       164 ~  164 (220)
T 2v9t_B          164 F  164 (220)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.6e-17  Score=158.03  Aligned_cols=152  Identities=18%  Similarity=0.275  Sum_probs=90.7

Q ss_pred             CCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCcccccccccccc
Q 041683          399 FSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAIT  478 (743)
Q Consensus       399 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~  478 (743)
                      +++|+.|++++|.+. .+| .+ ..+++|++|++++|.+..  +..+..+++|++|++++|++.+..|..+..++.    
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~----  113 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GI-EYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS----  113 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TG-GGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT----
T ss_pred             cCCccEEeccCCCcc-ChH-HH-hcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCC----
Confidence            344444444444444 333 22 234555555555554431  124555666666666666665544544444433    


Q ss_pred             CccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCc-Ccc
Q 041683          479 DSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNL-LTG  557 (743)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~  557 (743)
                                                                |++|++++|++++..+..+..+++|++|++++|+ ++ 
T Consensus       114 ------------------------------------------L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-  150 (197)
T 4ezg_A          114 ------------------------------------------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-  150 (197)
T ss_dssp             ------------------------------------------CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-
T ss_pred             ------------------------------------------CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-
Confidence                                                      3666666666666666777777888888888887 55 


Q ss_pred             cCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccc
Q 041683          558 RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG  605 (743)
Q Consensus       558 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~  605 (743)
                      .+| .+..+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus       151 ~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          151 DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred             ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence            454 577788888888888888753 3 56777888888888887653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=2e-17  Score=171.32  Aligned_cols=100  Identities=16%  Similarity=0.089  Sum_probs=48.7

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCc-EEEccCccccccCCcccCCCCCCCEEe
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL-SLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      ++|+.+++++|++..+.+.+|.++++|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence            44555555555555444445555555555555554 4434444455555555 555544 44444444455555555555


Q ss_pred             CCCCcCcccCchhHHhcccCCcEE
Q 041683          407 LGENELVGSIPSWIGERFSILKIL  430 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L  430 (743)
                      +++|.+. .++...|.++++|+.+
T Consensus       304 l~~n~i~-~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          304 ATGDKIT-TLGDELFGNGVPSKLI  326 (329)
T ss_dssp             ECSSCCC-EECTTTTCTTCCCCEE
T ss_pred             eCCCccC-ccchhhhcCCcchhhh
Confidence            5444444 3444333344444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.8e-17  Score=165.27  Aligned_cols=79  Identities=23%  Similarity=0.333  Sum_probs=43.6

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG  408 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  408 (743)
                      ++..++++++.+.+..  .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4555566666665332  35556666666666666653 23 45555566666666665554333  5555555555555


Q ss_pred             CCcCc
Q 041683          409 ENELV  413 (743)
Q Consensus       409 ~n~i~  413 (743)
                      +|++.
T Consensus        94 ~N~l~   98 (263)
T 1xeu_A           94 RNRLK   98 (263)
T ss_dssp             SSCCS
T ss_pred             CCccC
Confidence            55554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.9e-17  Score=165.08  Aligned_cols=80  Identities=20%  Similarity=0.376  Sum_probs=58.3

Q ss_pred             ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      |+.|++++|++++.  +.+..+++|++|++++|++++. + .+..+++|+.|++++|++++.  ..+..+++|+.|++++
T Consensus       108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred             ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence            46666666666642  2467778888888888888743 3 577788888888888888765  5577788888888888


Q ss_pred             Cccccc
Q 041683          601 NNLVGK  606 (743)
Q Consensus       601 N~l~~~  606 (743)
                      |++++.
T Consensus       182 N~~~~~  187 (263)
T 1xeu_A          182 QKCVNE  187 (263)
T ss_dssp             EEEECC
T ss_pred             CcccCC
Confidence            888765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=3e-19  Score=197.30  Aligned_cols=87  Identities=25%  Similarity=0.334  Sum_probs=62.9

Q ss_pred             ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCC-CccccCcCCCCeeeCc
Q 041683          521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQI-PQSMSNLSFLNHLNLS  599 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~ls  599 (743)
                      |+.|++++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+|+
T Consensus       465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            366777777776 566677777777777777777774 55 6777777777777777777665 7777777777777777


Q ss_pred             CCcccccCCCC
Q 041683          600 NNNLVGKIPSS  610 (743)
Q Consensus       600 ~N~l~~~~p~~  610 (743)
                      +|++++.+|..
T Consensus       542 ~N~l~~~~~~~  552 (567)
T 1dce_A          542 GNSLCQEEGIQ  552 (567)
T ss_dssp             TSGGGGSSSCT
T ss_pred             CCcCCCCccHH
Confidence            77777766644

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.8e-17  Score=189.18  Aligned_cols=192  Identities=23%  Similarity=0.205  Sum_probs=110.5

Q ss_pred             EEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCc
Q 041683          332 FLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE  411 (743)
Q Consensus       332 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~  411 (743)
                      .++++.|.+. ..++.|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence            3444555555 55677788888888888888887 56666667888888888888888 667778888888888888888


Q ss_pred             CcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccc
Q 041683          412 LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSL  491 (743)
Q Consensus       412 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  491 (743)
                      ++ .+|..+. .+++|++|+|++|.+. .+|..|..+++|+.|+|++|++++.+|..+..+...                
T Consensus       282 l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~----------------  342 (727)
T 4b8c_D          282 LT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT----------------  342 (727)
T ss_dssp             CS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH----------------
T ss_pred             CC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh----------------
Confidence            87 7787765 6888888888888887 667778888889999999998888877766544322                


Q ss_pred             cCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCC--------cCcccCCCCC
Q 041683          492 RSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHN--------LLTGRIPDNI  563 (743)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~  563 (743)
                                                   ...+++++|.+++.+|.      .|+.|++++|        .+.+..+..+
T Consensus       343 -----------------------------~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~  387 (727)
T 4b8c_D          343 -----------------------------GLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLA  387 (727)
T ss_dssp             -----------------------------HHHHHHHHCCCCCCCCC------C---------------------------
T ss_pred             -----------------------------hhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchh
Confidence                                         13367778888777664      3555666666        3333334444


Q ss_pred             CCCCCccEEECcCCcCC
Q 041683          564 GVMRSIESLDLSANQLS  580 (743)
Q Consensus       564 ~~l~~L~~L~Ls~N~l~  580 (743)
                      ..+..++...+++|-+.
T Consensus       388 ~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          388 TDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             --------------CCC
T ss_pred             hcccccceeeeeccccc
Confidence            55555666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.6e-16  Score=164.51  Aligned_cols=245  Identities=15%  Similarity=0.147  Sum_probs=117.3

Q ss_pred             CCCCCEEECCCCCCC--------------------CCCchhhcC--------CCCCCEEEcCCCccccccCcccccCCCC
Q 041683           17 LTSLKYLDLSSNELN--------------------STVLGWLSK--------VNDLEFLSVYSNRLQGNVSSLGLENLTS   68 (743)
Q Consensus        17 l~~L~~L~Ls~n~l~--------------------~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~~~~~~~~l~~   68 (743)
                      +++|++|||++|+|.                    .+.+.+|.+        +++|+.|+|+. .++ .++..+|.++++
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence            778999999999887                    334456666        77777777777 666 566667777777


Q ss_pred             CCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCcc-EEEccCCcCcccchhhc----cC
Q 041683           69 IKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELE-SLRLGSSQIFGHLTNQL----RR  143 (743)
Q Consensus        69 L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~-~L~L~~n~~~~~~~~~l----~~  143 (743)
                      |+.|+++ ++.+....+.+|.++.++..+....+..... ...+.......+..|+ .+.+....   .++..+    ..
T Consensus       126 L~~l~l~-~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~-~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~  200 (329)
T 3sb4_A          126 LKICQIR-KKTAPNLLPEALADSVTAIFIPLGSSDAYRF-KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQ  200 (329)
T ss_dssp             CCEEEBC-CSSCCEECTTSSCTTTCEEEECTTCTHHHHT-STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCC
T ss_pred             cceEEcC-CCCccccchhhhcCCCceEEecCcchhhhhc-cccccccccccccccceeEEecCCC---cHHHHHhhcccC
Confidence            7777777 5555555666677766666655543211000 0001111111111333 22222211   111111    11


Q ss_pred             CCCCCEEECcCccCccccchhc-cCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCcccc-
Q 041683          144 FKRLNSLDLSNTILDGSIPFSL-GQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLT-  221 (743)
Q Consensus       144 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~-  221 (743)
                      ..+++.+.+.++-.. .....+ ..+++|++|++++|+++ .++...|.++++|+.+++.+| +.......|..+.+|+ 
T Consensus       201 ~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~  277 (329)
T 3sb4_A          201 PRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG  277 (329)
T ss_dssp             GGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence            233344444333111 111111 12444444444444444 444444444444444444444 4444444444444454 


Q ss_pred             EEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEe
Q 041683          222 VLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLN  273 (743)
Q Consensus       222 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~  273 (743)
                      .+++.+ .+....+.+|.++++|+.++++.|.++ .++...|..+++|+.++
T Consensus       278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEE
T ss_pred             EEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhc
Confidence            444444 343344445555555555555555553 24444444445555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=2.4e-16  Score=149.02  Aligned_cols=156  Identities=21%  Similarity=0.240  Sum_probs=113.7

Q ss_pred             CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCc-cccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683          403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI-QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY  481 (743)
Q Consensus       403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  481 (743)
                      +++++++|.+. .+|..+.   .++++|++++|++.+..+. .|..+++|++|++++|++++..|..|..++.|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            56777777775 6665432   3677777777777755543 37777888888888888877777777666554      


Q ss_pred             chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683          482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD  561 (743)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  561 (743)
                                                              ++|++++|++++..+..|.++++|++|+|++|++++..|.
T Consensus        81 ----------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  120 (192)
T 1w8a_A           81 ----------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             ----------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ----------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence                                                    7888888888877787888999999999999999988899


Q ss_pred             CCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCC
Q 041683          562 NIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       562 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~  609 (743)
                      .|..+++|++|++++|++++..+-.. -...++...+..+...+..|.
T Consensus       121 ~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          121 SFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             SSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred             HhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCCh
Confidence            99999999999999999987654210 011233345556666666564

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.66  E-value=4e-15  Score=158.01  Aligned_cols=335  Identities=11%  Similarity=0.099  Sum_probs=167.9

Q ss_pred             CCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccch
Q 041683           30 LNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDIS  109 (743)
Q Consensus        30 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  109 (743)
                      ++.+...+|.++++|+.+.+..+ ++ .++..+|.++++|+.+++. ++ ++.....+|.++.+|+.+.+..+ +.....
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp-~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~  133 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIP-DS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV  133 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCC-TT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeC-CC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence            44455566777777777777543 54 5555567777777777775 22 33344556666666666555432 111111


Q ss_pred             hhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhh
Q 041683          110 EILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIH  189 (743)
Q Consensus       110 ~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  189 (743)
                      ..+...      .+....... ........+|.++++|+.+.+.++.. .+...+|.++.+|+.+++..+ ++ .++...
T Consensus       134 ~aF~~~------~~~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~  203 (394)
T 4fs7_A          134 EAFKGC------DFKEITIPE-GVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYC  203 (394)
T ss_dssp             TTTTTC------CCSEEECCT-TCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CC-EECTTT
T ss_pred             eeeecc------cccccccCc-cccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ce-EeCchh
Confidence            122211      122222111 12223345677778888888865543 355567777888888877655 43 566667


Q ss_pred             hcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccC
Q 041683          190 FVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQY  269 (743)
Q Consensus       190 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L  269 (743)
                      |.++..|+.+.+..+...  +...+.....|+.+.+.... .......+..+..++.+.+..+...  +....+..+   
T Consensus       204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~---  275 (394)
T 4fs7_A          204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNC---  275 (394)
T ss_dssp             TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTC---
T ss_pred             hccccccceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce--eeccccccc---
Confidence            777777777776655332  12233333455555554321 1222334444555555555443221  222222223   


Q ss_pred             ceEecccCccccCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCcccc
Q 041683          270 FYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWM  349 (743)
Q Consensus       270 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  349 (743)
                                                                                ..++.+......+   ....|.
T Consensus       276 ----------------------------------------------------------~~l~~~~~~~~~i---~~~~F~  294 (394)
T 4fs7_A          276 ----------------------------------------------------------SGLKKVIYGSVIV---PEKTFY  294 (394)
T ss_dssp             ----------------------------------------------------------TTCCEEEECSSEE---CTTTTT
T ss_pred             ----------------------------------------------------------cccceeccCceee---cccccc
Confidence                                                                      3333333333221   223444


Q ss_pred             CCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcE
Q 041683          350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKI  429 (743)
Q Consensus       350 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~  429 (743)
                      .+.+|+.+.+..+ +..+...+|.++.+|+.+++.++ ++.+...+|.+|++|+.+++..+ ++ .++...|.++.+|+.
T Consensus       295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~  370 (394)
T 4fs7_A          295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKK  370 (394)
T ss_dssp             TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCE
T ss_pred             ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCE
Confidence            5555555555433 33344445555555555555432 44444455555555555555544 33 444444445555665


Q ss_pred             EEccCCcCcccCCccccCCCCccEE
Q 041683          430 LNLRSNKFHGDFPIQLCGLAFLQIL  454 (743)
Q Consensus       430 L~L~~n~l~~~~~~~~~~l~~L~~L  454 (743)
                      +++..+ +. .+..+|.++++|+.+
T Consensus       371 i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          371 VELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             EEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             EEECCC-CE-EhhheecCCCCCcEE
Confidence            555443 11 123345566655543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=6.5e-19  Score=194.65  Aligned_cols=205  Identities=18%  Similarity=0.091  Sum_probs=135.2

Q ss_pred             cCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCc-------------CCcccchhccCCCCCCEEE-ccCCcC
Q 041683           39 SKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDE-------------LGGKIPTSFGKLCKLTSFS-MRFTKL  104 (743)
Q Consensus        39 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~-------------l~~~~~~~l~~l~~L~~L~-L~~n~l  104 (743)
                      ..+++|+.|+|++|.++ .+|. .++++++|+.|+++ ++.             ..+..|..++.+++|+.|+ ++.|.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~-~i~~l~~L~~L~l~-~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQS-ELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHH-HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhhHH-hhHH-HHHHHHHHHHhccc-cchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            56778888888888887 7777 78888888888887 543             3344455555555665555 343322


Q ss_pred             cccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccc
Q 041683          105 SQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGT  184 (743)
Q Consensus       105 ~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  184 (743)
                      .                +|+.+.+++|.+....+      ..|++|+|++|.+++ +|. |+.+++|++|+|++|+++ .
T Consensus       423 ~----------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~  477 (567)
T 1dce_A          423 D----------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A  477 (567)
T ss_dssp             H----------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred             c----------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence            1                12223333333322211      246777777777764 454 677777777777777776 6


Q ss_pred             cChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCc-chhhcCCCCCCEEEccCCCCccccCh--h
Q 041683          185 VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRF-PLWLQSQRELNDLDISSTRISAKIPR--G  261 (743)
Q Consensus       185 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~--~  261 (743)
                      +|. .+..+++|++|++++|.+++. + .+..+++|+.|++++|++.+.. |..+..+++|+.|++++|.+++..+.  .
T Consensus       478 lp~-~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  554 (567)
T 1dce_A          478 LPP-ALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER  554 (567)
T ss_dssp             CCG-GGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred             cch-hhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence            665 567777777777777777653 2 5666777777777777777665 88888999999999999999765442  2


Q ss_pred             hhhhcccCceEec
Q 041683          262 FWNSIYQYFYLNI  274 (743)
Q Consensus       262 ~~~~l~~L~~L~l  274 (743)
                      +...+++|+.|++
T Consensus       555 l~~~lp~L~~L~l  567 (567)
T 1dce_A          555 LAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHCTTCSEEEC
T ss_pred             HHHHCcccCccCC
Confidence            4455788888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=3.2e-17  Score=187.08  Aligned_cols=221  Identities=18%  Similarity=0.164  Sum_probs=118.6

Q ss_pred             CCccEEECcCCcCcccCCccccCCCC-----CCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCC
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLR-----LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSL  402 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-----L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L  402 (743)
                      +.++.|++.+|.+... +..+.....     +..++++.|.+. ..+..|..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            4577888888877743 322222222     222334444444 55778888999999999999998 455566689999


Q ss_pred             CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683          403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD  482 (743)
Q Consensus       403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  482 (743)
                      ++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+|..|..++.|       
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L-------  318 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL-------  318 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-------
T ss_pred             CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-------
Confidence            99999999998 8887775 7999999999999999 67888999999999999999987 677777776664       


Q ss_pred             hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCC-CCEEeCCCCcCcccCCC
Q 041683          483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQG-LQSLNLSHNLLTGRIPD  561 (743)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~p~  561 (743)
                                                             +.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus       319 ---------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          319 ---------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             ---------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             ---------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence                                                   88999999999888888765432 23478999999988776


Q ss_pred             CCCCCCCccEEECcCC--------cCCCCCCccccCcCCCCeeeCcCCcccccC
Q 041683          562 NIGVMRSIESLDLSAN--------QLSGQIPQSMSNLSFLNHLNLSNNNLVGKI  607 (743)
Q Consensus       562 ~~~~l~~L~~L~Ls~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~  607 (743)
                      .      |+.|++++|        .+.+..+..+..+..++...+++|-+.+..
T Consensus       360 ~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~  407 (727)
T 4b8c_D          360 E------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY  407 (727)
T ss_dssp             C-----------------------------------------------CCCGGG
T ss_pred             c------cceeEeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence            4      556667776        445555555666777788888888886443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=143.36  Aligned_cols=88  Identities=28%  Similarity=0.297  Sum_probs=76.7

Q ss_pred             ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      |+.|++++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|+++...+..|..+++|+.|++++
T Consensus        56 L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            36777777777767777788999999999999999988888899999999999999999977777899999999999999


Q ss_pred             CcccccCC
Q 041683          601 NNLVGKIP  608 (743)
Q Consensus       601 N~l~~~~p  608 (743)
                      |++.|.+.
T Consensus       136 N~~~C~c~  143 (193)
T 2wfh_A          136 NPLYCDCN  143 (193)
T ss_dssp             SCEECSGG
T ss_pred             CCeecCCc
Confidence            99998765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.2e-15  Score=140.97  Aligned_cols=133  Identities=20%  Similarity=0.219  Sum_probs=92.3

Q ss_pred             cCCcEEEccCCcCc-ccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCccccccc
Q 041683          425 SILKILNLRSNKFH-GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA  503 (743)
Q Consensus       425 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (743)
                      ++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+.  ..+..++.                             
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-----------------------------   72 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK-----------------------------   72 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS-----------------------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC-----------------------------
Confidence            45666666666665 45555566666777777777766543  33333333                             


Q ss_pred             ceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccC-CCCCCCCCCccEEECcCCcCCCC
Q 041683          504 SLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRI-PDNIGVMRSIESLDLSANQLSGQ  582 (743)
Q Consensus       504 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~  582 (743)
                                       |++|++++|++++.+|..+..+++|++|++++|.+++.. +..+..+++|+.|++++|++++.
T Consensus        73 -----------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A           73 -----------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             -----------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred             -----------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence                             467777777777666777777888888888888887532 26678888888888888888865


Q ss_pred             CC---ccccCcCCCCeeeCcCCcccc
Q 041683          583 IP---QSMSNLSFLNHLNLSNNNLVG  605 (743)
Q Consensus       583 ~p---~~l~~l~~L~~L~ls~N~l~~  605 (743)
                      .+   ..+..+++|++|++++|.+..
T Consensus       136 ~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          136 NDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             TTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             HHHHHHHHHhCccCcEecCCCCChhh
Confidence            55   467788888888888887764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.62  E-value=2.1e-14  Score=151.53  Aligned_cols=241  Identities=12%  Similarity=0.132  Sum_probs=123.9

Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEE
Q 041683           18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSF   97 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L   97 (743)
                      ..++.+.+.. .++.+...+|.++ +|+.+++..+ ++ .++..+|.++ +|+.+++. + .+....+.+|.+|++|+.+
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp-~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFP-S-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECC-T-TCCEECSSTTTTCTTCCEE
T ss_pred             CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeC-C-CccEehHHHhhCcccCCee
Confidence            4455555542 3445555555553 4666665544 43 4444455553 45666655 2 3444444555566666666


Q ss_pred             EccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEcc
Q 041683           98 SMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLS  177 (743)
Q Consensus        98 ~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  177 (743)
                      ++..|.+.......+. ..     +|+.+.+..+ +......+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+ 
T Consensus       186 ~l~~n~l~~I~~~aF~-~~-----~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-  255 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YA-----GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-  255 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TC-----CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-
T ss_pred             ecCCCcceEechhhEe-ec-----ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-
Confidence            6655555443333332 12     5556655532 44444555666666666666543 34344445555 45666665 


Q ss_pred             CCCCccccChhhhcCCCCCCEEECCCCcce-----eecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCC
Q 041683          178 NNKLNGTVSEIHFVNLTKLAFFRANGNSLI-----FKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISST  252 (743)
Q Consensus       178 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  252 (743)
                      .+.++ .++...|.++++|+.+++.+|.+.     ......|..+.+|+.+.+.. .+......+|.++.+|+.+.+..+
T Consensus       256 p~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          256 PNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             ETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CCCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            23343 444445666666666665555443     34445555556666666652 344444555556666666666433


Q ss_pred             CCccccChhhhhhcccCceEecccCccc
Q 041683          253 RISAKIPRGFWNSIYQYFYLNISGNQIY  280 (743)
Q Consensus       253 ~i~~~~~~~~~~~l~~L~~L~l~~n~l~  280 (743)
                       ++ .++...|..+ +|+.+++.+|.+.
T Consensus       334 -l~-~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          334 -VT-QINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             -CC-EECTTSSSSS-CCCEEEECCSSCC
T ss_pred             -cc-EEcHHhCCCC-CCCEEEEcCCCCc
Confidence             32 3444444444 5666666655443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=3.3e-15  Score=139.33  Aligned_cols=90  Identities=20%  Similarity=0.181  Sum_probs=75.4

Q ss_pred             ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      |++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus        54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           54 LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            36666777776656666678899999999999999977777788999999999999999977777778899999999999


Q ss_pred             CcccccCCCC
Q 041683          601 NNLVGKIPSS  610 (743)
Q Consensus       601 N~l~~~~p~~  610 (743)
                      |+++|.+|..
T Consensus       134 N~~~~~~~~l  143 (177)
T 2o6r_A          134 NPWDCSCPRI  143 (177)
T ss_dssp             SCBCCCHHHH
T ss_pred             CCeeccCccH
Confidence            9999887743

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=2.3e-14  Score=151.30  Aligned_cols=256  Identities=11%  Similarity=0.076  Sum_probs=194.3

Q ss_pred             CcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcc
Q 041683            4 NQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGK   83 (743)
Q Consensus         4 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~   83 (743)
                      |.++.+-+.+|.+. +|+.+++..+ +..+...+|.++ +|+.+++.. .++ .++..+|.++++|+.++++ ++.++..
T Consensus       122 ~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~-~n~l~~I  195 (401)
T 4fdw_A          122 NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLS-KTKITKL  195 (401)
T ss_dssp             TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECT-TSCCSEE
T ss_pred             CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecC-CCcceEe
Confidence            45666666788885 7999999866 778888888885 699999986 666 6776689999999999998 6667666


Q ss_pred             cchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccch
Q 041683           84 IPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPF  163 (743)
Q Consensus        84 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~  163 (743)
                      ...+|. +.+|+.+.+..+ +.......|..+.     +|+.+++..+ +......+|.+ .+|+.+.+. +.++.+...
T Consensus       196 ~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~-----~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~  265 (401)
T 4fdw_A          196 PASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTS-----QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASR  265 (401)
T ss_dssp             CTTTTT-TCCCSEEECCTT-CCEECTTTTTTCT-----TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTT
T ss_pred             chhhEe-ecccCEEEeCCc-hheehhhHhhCCC-----CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChh
Confidence            666676 688999998744 5544445555555     8999998874 55666667777 789999994 456657778


Q ss_pred             hccCCCCCCEEEccCCCCc----cccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhc
Q 041683          164 SLGQISNLEYLDLSNNKLN----GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ  239 (743)
Q Consensus       164 ~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  239 (743)
                      +|.+|++|+.+++.+|.+.    ..++...|.++++|+.+++.. .+.......|..+.+|+.+.+..+ +......+|.
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~  343 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN  343 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence            8999999999999887653    246667899999999999984 577777888888999999999654 6666777888


Q ss_pred             CCCCCCEEEccCCCCccccChhhhhhc-ccCceEecccCcc
Q 041683          240 SQRELNDLDISSTRISAKIPRGFWNSI-YQYFYLNISGNQI  279 (743)
Q Consensus       240 ~l~~L~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~l~~n~l  279 (743)
                      ++ +|+.+++.+|.+.. ++...|..+ ..++.+.+..+.+
T Consensus       344 ~~-~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          344 NT-GIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SS-CCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CC-CCCEEEEcCCCCcc-cccccccCCCCCccEEEeCHHHH
Confidence            88 89999999988864 444444444 4677888777653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.5e-15  Score=137.19  Aligned_cols=129  Identities=21%  Similarity=0.227  Sum_probs=97.6

Q ss_pred             ccCCcEEEccCCcCc-ccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccc
Q 041683          424 FSILKILNLRSNKFH-GDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED  502 (743)
Q Consensus       424 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (743)
                      .++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+.  ..+..++.                            
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------   65 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK----------------------------   65 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence            456777777777776 56666777778888888888877644  33333333                            


Q ss_pred             cceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCccc-CCCCCCCCCCccEEECcCCcCCC
Q 041683          503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGR-IPDNIGVMRSIESLDLSANQLSG  581 (743)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~  581 (743)
                                        |++|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|++++
T Consensus        66 ------------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           66 ------------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             ------------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             ------------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence                              57888888888877787788888899999999988853 34778888899999999999887


Q ss_pred             CCC---ccccCcCCCCeeeCcC
Q 041683          582 QIP---QSMSNLSFLNHLNLSN  600 (743)
Q Consensus       582 ~~p---~~l~~l~~L~~L~ls~  600 (743)
                      ..+   ..+..+++|+.||+++
T Consensus       128 ~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          128 LNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             STTHHHHHHHHCTTCCEETTBC
T ss_pred             hHHHHHHHHHHCCCcccccCCC
Confidence            665   5678888899888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=8.2e-15  Score=135.38  Aligned_cols=132  Identities=18%  Similarity=0.208  Sum_probs=71.8

Q ss_pred             CCCCEEEcCCCccc-cccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhccccccc
Q 041683           42 NDLEFLSVYSNRLQ-GNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA  120 (743)
Q Consensus        42 ~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~  120 (743)
                      ++|++|++++|.++ +.+|. .+..+++|++|+++ ++.+++.  ..+..+++|++|++++|.+.+.+|..+..++    
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----   95 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLI-NVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP----   95 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEE-SSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT----
T ss_pred             ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCc-CCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC----
Confidence            34444444444444 33443 34444455555554 3333332  3444455555555555555444444444444    


Q ss_pred             CCccEEEccCCcCcccc-hhhccCCCCCCEEECcCccCccccc---hhccCCCCCCEEEccCCCCc
Q 041683          121 NELESLRLGSSQIFGHL-TNQLRRFKRLNSLDLSNTILDGSIP---FSLGQISNLEYLDLSNNKLN  182 (743)
Q Consensus       121 ~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~  182 (743)
                       +|++|++++|.+.+.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+.
T Consensus        96 -~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           96 -NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             -TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             -CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence             5566666666554432 2456677777777777777775443   36677777777777777765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.58  E-value=7.1e-14  Score=148.41  Aligned_cols=137  Identities=8%  Similarity=0.043  Sum_probs=82.3

Q ss_pred             CcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCC
Q 041683          133 IFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINP  212 (743)
Q Consensus       133 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  212 (743)
                      ++.....+|.++.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++ .++...|.++.+|+.+.+..+ +......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecce
Confidence            34445567778888888888643 66566677888888888888654 44 666667888888877666544 4444445


Q ss_pred             CCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccC
Q 041683          213 NWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGN  277 (743)
Q Consensus       213 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n  277 (743)
                      .|..+...+.......  ......+|.++.+|+.+.+.++..  .++...|..+.+|+.+++..+
T Consensus       135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~  195 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN  195 (394)
T ss_dssp             TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT
T ss_pred             eeecccccccccCccc--cccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC
Confidence            5555443333222221  123345567777777777765432  355555555666666655443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=1.3e-14  Score=131.11  Aligned_cols=127  Identities=27%  Similarity=0.362  Sum_probs=62.0

Q ss_pred             CCCCEEECCCCCCC-CCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCE
Q 041683           18 TSLKYLDLSSNELN-STVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS   96 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~   96 (743)
                      ++|++|++++|.+. +..|..+..+++|++|++++|.+++ + . .+.++++|++|+++ +|.+++.+|..+.++++   
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~-~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~---   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-A-NLPKLNKLKKLELS-DNRVSGGLEVLAEKCPN---   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-T-TCCCCTTCCEEECC-SSCCCSCTHHHHHHCTT---
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-h-hhhcCCCCCEEECC-CCcccchHHHHhhhCCC---
Confidence            45555566655554 3444455555555555555555552 2 1 34555555555555 33444334444444444   


Q ss_pred             EEccCCcCcccchhhhhcccccccCCccEEEccCCcCccc-chhhccCCCCCCEEECcCccCccccc---hhccCCCCCC
Q 041683           97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGH-LTNQLRRFKRLNSLDLSNTILDGSIP---FSLGQISNLE  172 (743)
Q Consensus        97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~  172 (743)
                                                |++|++++|.+.+. .+..+..+++|++|++++|.+++..+   ..+..+++|+
T Consensus        90 --------------------------L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           90 --------------------------LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             --------------------------CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             --------------------------CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence                                      44444444444332 12345555555555555555554333   3455555555


Q ss_pred             EEEcc
Q 041683          173 YLDLS  177 (743)
Q Consensus       173 ~L~L~  177 (743)
                      +|+++
T Consensus       144 ~L~l~  148 (149)
T 2je0_A          144 YLDGY  148 (149)
T ss_dssp             EETTB
T ss_pred             cccCC
Confidence            55554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=136.01  Aligned_cols=128  Identities=21%  Similarity=0.267  Sum_probs=95.8

Q ss_pred             CEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccc
Q 041683          403 EVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYD  482 (743)
Q Consensus       403 ~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  482 (743)
                      +.+++++|.+. .+|..+   .++|++|++++|.+. .+|..|.++++|+.|++++|++++..+..|.+++.|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            45666666665 555433   246777777777776 455667777777777777777776666666655553       


Q ss_pred             hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCC
Q 041683          483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN  562 (743)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  562 (743)
                                                             ++|++++|++++..+..|.++++|+.|+|++|++++..+..
T Consensus        81 ---------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~  121 (193)
T 2wfh_A           81 ---------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA  121 (193)
T ss_dssp             ---------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred             ---------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhh
Confidence                                                   77788888887777778889999999999999999766677


Q ss_pred             CCCCCCccEEECcCCcCCC
Q 041683          563 IGVMRSIESLDLSANQLSG  581 (743)
Q Consensus       563 ~~~l~~L~~L~Ls~N~l~~  581 (743)
                      |..+++|+.|++++|++..
T Consensus       122 ~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          122 FNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             TTTCTTCCEEECCSSCEEC
T ss_pred             hhcCccccEEEeCCCCeec
Confidence            9999999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=3.1e-14  Score=132.70  Aligned_cols=133  Identities=20%  Similarity=0.163  Sum_probs=98.5

Q ss_pred             CCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCcc
Q 041683          402 LEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY  481 (743)
Q Consensus       402 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  481 (743)
                      .+.+++++|.+. .+|..+   .++|+.|++++|++.+..+..|..+++|++|++++|++.+..+..+..++.       
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-------   77 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK-------   77 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCc-------
Confidence            356666666665 555432   356777777777777655556677777777777777777555555555444       


Q ss_pred             chhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC
Q 041683          482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD  561 (743)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~  561 (743)
                                                             |++|++++|++++..+..|..+++|++|++++|++++..+.
T Consensus        78 ---------------------------------------L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A           78 ---------------------------------------LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG  118 (177)
T ss_dssp             ---------------------------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ---------------------------------------cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence                                                   47788888888877777788899999999999999976666


Q ss_pred             CCCCCCCccEEECcCCcCCCCCC
Q 041683          562 NIGVMRSIESLDLSANQLSGQIP  584 (743)
Q Consensus       562 ~~~~l~~L~~L~Ls~N~l~~~~p  584 (743)
                      .+..+++|++|++++|++++..|
T Consensus       119 ~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          119 IFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HhcCCcccCEEEecCCCeeccCc
Confidence            67889999999999999987554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=4.6e-14  Score=131.36  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=52.3

Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCC--CCCCCCCccEEECcCCcCCCCCCc----cccCcCCCCe
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPD--NIGVMRSIESLDLSANQLSGQIPQ----SMSNLSFLNH  595 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~l~~L~~  595 (743)
                      ++|++++|++++..+..|..+++|++|+|++|+++ .+|.  .+..+++|+.|++++|+++ .+|.    .+..+++|+.
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            44444444444333344566777777777777775 4444  5667777777777777776 3444    3667777888


Q ss_pred             eeCcCCcccc
Q 041683          596 LNLSNNNLVG  605 (743)
Q Consensus       596 L~ls~N~l~~  605 (743)
                      ||+++|....
T Consensus       145 Ld~~~n~~~~  154 (176)
T 1a9n_A          145 LDFQKVKLKE  154 (176)
T ss_dssp             ETTEECCHHH
T ss_pred             eCCCcCCHHH
Confidence            8887776653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=8.1e-14  Score=129.67  Aligned_cols=131  Identities=17%  Similarity=0.113  Sum_probs=110.8

Q ss_pred             CCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEE
Q 041683          326 FSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVL  405 (743)
Q Consensus       326 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  405 (743)
                      .+++|++|++++|++... +......++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            367899999999999954 54333344999999999999965  678999999999999999998776767899999999


Q ss_pred             eCCCCcCcccCch--hHHhcccCCcEEEccCCcCcccCCc----cccCCCCccEEEccCCccc
Q 041683          406 DLGENELVGSIPS--WIGERFSILKILNLRSNKFHGDFPI----QLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       406 ~Ls~n~i~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~  462 (743)
                      ++++|.+. .+|.  .+ ..+++|+.|++++|++. ..|.    .+..+++|+.||+++|.+.
T Consensus        94 ~L~~N~i~-~~~~~~~l-~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPL-ASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCC-CGGGGGGG-GGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCC-cchhhHhh-hcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999996 6775  44 47899999999999998 4555    3889999999999999876

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.7e-13  Score=126.42  Aligned_cols=90  Identities=23%  Similarity=0.211  Sum_probs=81.5

Q ss_pred             ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      +++|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            58888888888888888899999999999999999987777889999999999999999988777899999999999999


Q ss_pred             CcccccCCCC
Q 041683          601 NNLVGKIPSS  610 (743)
Q Consensus       601 N~l~~~~p~~  610 (743)
                      |++++.++..
T Consensus       112 N~~~c~c~~l  121 (170)
T 3g39_A          112 NPWDCACSDI  121 (170)
T ss_dssp             SCBCTTBGGG
T ss_pred             CCCCCCchhH
Confidence            9999987754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=9.5e-16  Score=145.87  Aligned_cols=129  Identities=22%  Similarity=0.305  Sum_probs=79.7

Q ss_pred             cccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccc
Q 041683          423 RFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED  502 (743)
Q Consensus       423 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (743)
                      .+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..++.                            
T Consensus        46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~----------------------------   94 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT----------------------------   94 (198)
T ss_dssp             HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH----------------------------
T ss_pred             cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc----------------------------
Confidence            56667777777776664 44 5666677777777777665 34433333232                            


Q ss_pred             cceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCC-CCCCCCCCccEEECcCCcCCC
Q 041683          503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIP-DNIGVMRSIESLDLSANQLSG  581 (743)
Q Consensus       503 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~  581 (743)
                                        |+.|++++|++++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++
T Consensus        95 ------------------L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           95 ------------------LEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ------------------CSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             ------------------CCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence                              4667777777664 33 46667777777777777763222 356667777777777777765


Q ss_pred             CCCcc----------ccCcCCCCeeeCcCCccc
Q 041683          582 QIPQS----------MSNLSFLNHLNLSNNNLV  604 (743)
Q Consensus       582 ~~p~~----------l~~l~~L~~L~ls~N~l~  604 (743)
                      ..|..          +..+++|+.||  +|+++
T Consensus       155 ~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          155 DYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            54432          56667777766  55554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=5.2e-13  Score=123.52  Aligned_cols=90  Identities=23%  Similarity=0.231  Sum_probs=78.8

Q ss_pred             ccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          521 VRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       521 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      |+.|++++|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            57888888888888888899999999999999999976666788999999999999999977777799999999999999


Q ss_pred             CcccccCCCC
Q 041683          601 NNLVGKIPSS  610 (743)
Q Consensus       601 N~l~~~~p~~  610 (743)
                      |++.+.++..
T Consensus       115 N~~~c~~~~~  124 (174)
T 2r9u_A          115 NPWDCECRDI  124 (174)
T ss_dssp             SCBCTTBGGG
T ss_pred             CCcccccccH
Confidence            9999876643

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=3.1e-15  Score=142.33  Aligned_cols=135  Identities=17%  Similarity=0.235  Sum_probs=80.2

Q ss_pred             CCCCCCEEECCCCCCCCCCch------hhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhcc
Q 041683           16 NLTSLKYLDLSSNELNSTVLG------WLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFG   89 (743)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~   89 (743)
                      ....++.++++.+.+.+..|.      .|..+++|++|++++|.++ .+|  .+.++++|++|+++ +|.+. .+|..+.
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~-~n~l~-~l~~~~~   90 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLG-RNLIK-KIENLDA   90 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEE-EEEEC-SCSSHHH
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECC-CCCcc-cccchhh
Confidence            344555555555555554444      6777777777777777776 355  46677777777777 44554 4555555


Q ss_pred             CCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccch-hhccCCCCCCEEECcCccCccccc
Q 041683           90 KLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLT-NQLRRFKRLNSLDLSNTILDGSIP  162 (743)
Q Consensus        90 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~  162 (743)
                      .+++|++|++++|.+++ +| .+..++     +|++|++++|.+....+ ..+..+++|++|++++|.+++..|
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~-----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  157 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLV-----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHH-----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCC-----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence            56666666666666654 23 344444     56666666666644322 345566666666666666554433

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.39  E-value=3.7e-11  Score=127.39  Aligned_cols=157  Identities=7%  Similarity=0.087  Sum_probs=82.1

Q ss_pred             CCCCCCCCC-CCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCc---cccccCcccccCCCCCCEEEcCCCCcCCcccc
Q 041683           10 IPSRLGNLT-SLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR---LQGNVSSLGLENLTSIKRLYLSENDELGGKIP   85 (743)
Q Consensus        10 ~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~   85 (743)
                      -..+|.+++ .|+.+.+.. .++.+...+|.++++|+.+.++.|.   ++ .+...+|.++.+|+.+.+. + .++....
T Consensus        55 g~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~-~-~~~~I~~  130 (394)
T 4gt6_A           55 GDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPIL-D-SVTEIDS  130 (394)
T ss_dssp             CTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGG-T-TCSEECT
T ss_pred             CHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccC-C-ccceehh
Confidence            345666664 477777764 3666667777777777777776553   44 5555567777777766665 2 2344445


Q ss_pred             hhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhc
Q 041683           86 TSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSL  165 (743)
Q Consensus        86 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~  165 (743)
                      .+|..+.+|+.+.+..+. .......+....     .|+.+.+..+ +......+|.. .+|+.+.+..+... ....+|
T Consensus       131 ~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~-----~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af  201 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEGV-TSVADGMFSYCY-----SLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAF  201 (394)
T ss_dssp             TTTTTCTTCCEEECCTTC-CEECTTTTTTCT-----TCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTT
T ss_pred             hhhhhhccccccccccee-eeecccceeccc-----ccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchh
Confidence            566667777776665321 111112222222     4555555433 22222333332 34555555443322 334455


Q ss_pred             cCCCCCCEEEccCC
Q 041683          166 GQISNLEYLDLSNN  179 (743)
Q Consensus       166 ~~l~~L~~L~L~~n  179 (743)
                      .++.+++......+
T Consensus       202 ~~c~~l~~~~~~~~  215 (394)
T 4gt6_A          202 SECFALSTITSDSE  215 (394)
T ss_dssp             TTCTTCCEEEECCS
T ss_pred             hhccccceeccccc
Confidence            55555555544433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.36  E-value=3e-12  Score=117.99  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=76.7

Q ss_pred             CcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCccccccccee
Q 041683          427 LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV  506 (743)
Q Consensus       427 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (743)
                      .+.+++++|.+. .+|..+  .++|++|++++|++.+..|..|..++.|                               
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------   56 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL-------------------------------   56 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence            445556666555 244333  2556666666666665555555554443                               


Q ss_pred             eeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCC
Q 041683          507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQI  583 (743)
Q Consensus       507 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  583 (743)
                                     ++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...
T Consensus        57 ---------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           57 ---------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             ---------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ---------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence                           66777777777666667888999999999999999777777999999999999999998543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.36  E-value=8.1e-11  Score=124.75  Aligned_cols=337  Identities=12%  Similarity=0.102  Sum_probs=170.5

Q ss_pred             ccCcccccCCC-CCCEEEcCCCCcCCcccchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcc
Q 041683           57 NVSSLGLENLT-SIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFG  135 (743)
Q Consensus        57 ~~~~~~~~~l~-~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~  135 (743)
                      .|++.+|.++. .|+.+.+. . .++.....+|.++++|+.+.+..+.-.                .++          .
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP-~-svt~Ig~~AF~~C~~L~~i~~~~n~p~----------------~l~----------~  104 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIP-D-TVTEIGSNAFYNCTSLKRVTIQDNKPS----------------CVK----------K  104 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEEC-T-TCCEECTTTTTTCTTCCEEEEGGGCCC----------------CCC----------E
T ss_pred             EcCHhhccCCCCcCEEEEEC-C-CeeEEhHHHhhCCccCceEeecCCCCC----------------eee----------E
Confidence            56666777774 58888887 3 355566777888888888877654211                122          1


Q ss_pred             cchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCC
Q 041683          136 HLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWV  215 (743)
Q Consensus       136 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  215 (743)
                      ....+|..+.+|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +. .+....|..+.+|+.+.+..+ +.......|.
T Consensus       105 Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~  180 (394)
T 4gt6_A          105 IGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFT  180 (394)
T ss_dssp             ECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             echhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEecccccc
Confidence            22334555566665555443 33344456666666666666533 22 445556666666666666544 3333333333


Q ss_pred             CCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCccc
Q 041683          216 PPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLIT  295 (743)
Q Consensus       216 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  295 (743)
                       ...|+.+.+..+-. .....+|..+.+++.......... .....++................                
T Consensus       181 -~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------------  241 (394)
T 4gt6_A          181 -GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQ----------------  241 (394)
T ss_dssp             -TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTT----------------
T ss_pred             -ccceeEEEECCccc-ccccchhhhccccceecccccccc-cccceeecccccccccccccccc----------------
Confidence             24566665544322 233445556666666655544332 11111111100000000000000                


Q ss_pred             CCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCC
Q 041683          296 TPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTL  375 (743)
Q Consensus       296 ~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  375 (743)
                          .....+.+..     .+...-...+..+..|+.+.+.++... +...+|.+++.|+.+.+. +.++.+...+|.++
T Consensus       242 ----~~~~~~~ip~-----~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c  310 (394)
T 4gt6_A          242 ----REDPAFKIPN-----GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGC  310 (394)
T ss_dssp             ----CCCSEEECCT-----TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTC
T ss_pred             ----cccceEEcCC-----cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCC
Confidence                0000000000     000000122344666777777655433 555667777777777775 34554556677777


Q ss_pred             CCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEE
Q 041683          376 SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILD  455 (743)
Q Consensus       376 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  455 (743)
                      .+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++ .+....|.++++|+.+++.++....   ..+....+|+.+.
T Consensus       311 ~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~  384 (394)
T 4gt6_A          311 ISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP  384 (394)
T ss_dssp             TTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred             CCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence            77777777654 55556667777777777777544 44 5666666667777777777665431   2455566677666


Q ss_pred             ccCCcc
Q 041683          456 VASNSL  461 (743)
Q Consensus       456 Ls~N~l  461 (743)
                      +..+.+
T Consensus       385 i~~~~~  390 (394)
T 4gt6_A          385 VAPGSI  390 (394)
T ss_dssp             ------
T ss_pred             eCCCCE
Confidence            665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=6.4e-12  Score=116.16  Aligned_cols=61  Identities=16%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQ  582 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  582 (743)
                      ++|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|++...
T Consensus        60 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           60 QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            6666666666655555678889999999999999966666699999999999999999843

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=6.9e-14  Score=146.15  Aligned_cols=39  Identities=18%  Similarity=0.126  Sum_probs=16.7

Q ss_pred             CCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCc
Q 041683          400 SSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH  438 (743)
Q Consensus       400 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~  438 (743)
                      ++|++|+|++|.+.+.....+...+++|+.|+|++|.+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~  139 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG  139 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC
Confidence            345555555555432222222223344455555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=7.4e-13  Score=138.31  Aligned_cols=164  Identities=15%  Similarity=0.138  Sum_probs=80.6

Q ss_pred             CCCCEEEcCCCccccccCccccc-----CCCCCCEEEcCCCCcCCcccchhc-cCCCCCCEEEccCCcCcccchhhhhcc
Q 041683           42 NDLEFLSVYSNRLQGNVSSLGLE-----NLTSIKRLYLSENDELGGKIPTSF-GKLCKLTSFSMRFTKLSQDISEILGIF  115 (743)
Q Consensus        42 ~~L~~L~Ls~n~l~~~~~~~~~~-----~l~~L~~L~Ls~~~~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l  115 (743)
                      ++|++|+|++|.++..... .+.     ..++|++|+|+ +|.+.......+ ..+++|++|++++|.++......+...
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~-~l~~~L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCT-VVAAVLGSGRHALDEVNLA-SCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHH-HHHHHHSSCSSCEEEEECT-TCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHH-HHHHHHhhCCCCceEEEec-CCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            4455556655555421111 111     12456666666 334433222222 223455666666666554333333221


Q ss_pred             cccccCCccEEEccCCcCccc----chhhccCCCCCCEEECcCccCcccc----chhccCCCCCCEEEccCCCCccc---
Q 041683          116 SACVANELESLRLGSSQIFGH----LTNQLRRFKRLNSLDLSNTILDGSI----PFSLGQISNLEYLDLSNNKLNGT---  184 (743)
Q Consensus       116 ~~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~---  184 (743)
                      -.....+|++|+|++|.+...    ++..+..+++|++|+|++|.+++..    +..+...++|++|+|++|.++..   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence            101112566666666666432    2334455666666666666665432    34455566677777777766521   


Q ss_pred             -cChhhhcCCCCCCEEECCCCccee
Q 041683          185 -VSEIHFVNLTKLAFFRANGNSLIF  208 (743)
Q Consensus       185 -~~~~~~~~l~~L~~L~l~~n~~~~  208 (743)
                       +.. .+...++|++|++++|.+..
T Consensus       230 ~l~~-~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          230 ALAR-AAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHH-HHHHCSSCCEEECTTSSCCH
T ss_pred             HHHH-HHHhCCCCCEEeccCCCCCH
Confidence             111 23445667777777776643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=3.9e-11  Score=124.97  Aligned_cols=103  Identities=22%  Similarity=0.200  Sum_probs=62.9

Q ss_pred             EEEccCC-cCcccCCccccCCCCccEEEccC-CccccccCccccccccccccCccchhhhhhccccCCCCccccccccee
Q 041683          429 ILNLRSN-KFHGDFPIQLCGLAFLQILDVAS-NSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLV  506 (743)
Q Consensus       429 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  506 (743)
                      .++++++ .++ .+|. +..+++|+.|+|++ |.+.+..+..|.+++.|                               
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L-------------------------------   58 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL-------------------------------   58 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence            4566666 666 3555 66666777777764 66665555555554443                               


Q ss_pred             eeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683          507 MKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS  580 (743)
Q Consensus       507 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (743)
                                     +.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..++ |+.|+|++|.+.
T Consensus        59 ---------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           59 ---------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ---------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ---------------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence                           6666666666666666666666666666666666644444444444 666666666665

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.14  E-value=7.8e-11  Score=122.69  Aligned_cols=68  Identities=18%  Similarity=0.117  Sum_probs=38.9

Q ss_pred             EEeCCCC-cCcccCchhHHhcccCCcEEEccC-CcCcccCCccccCCCCccEEEccCCccccccCcccccccc
Q 041683          404 VLDLGEN-ELVGSIPSWIGERFSILKILNLRS-NKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA  474 (743)
Q Consensus       404 ~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  474 (743)
                      .++++++ .++ .+|. +. .+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|+|++..|..|.+++.
T Consensus        12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~   81 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcC
Confidence            3455555 555 4555 32 455666666664 6666555555666666666666666666555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.12  E-value=7.1e-09  Score=109.23  Aligned_cols=312  Identities=10%  Similarity=0.060  Sum_probs=184.7

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      +|+.+.+.. .++.....+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .+...+|.+. +|+.+.+
T Consensus        47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i~l  120 (379)
T 4h09_A           47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDFEF  120 (379)
T ss_dssp             GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEEEC
T ss_pred             CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-CcccccC
Confidence            566666653 344555667888888888888654 555666677776 6777776543 44 5666567664 6888887


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      ..+ +.......|... .++.+.+..+ +.......+..+..++.+.+..+............  .........      
T Consensus       121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------  189 (379)
T 4h09_A          121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLY--NKNKTILES------  189 (379)
T ss_dssp             CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEE--ETTSSEEEE------
T ss_pred             CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceec--ccccceecc------
Confidence            765 333333344333 4555555432 22334445666677777766654432111110000  000000000      


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683          282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH  361 (743)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  361 (743)
                       .+..  ....           .+.+..     .........+..+.+++.+.+..+ +..+...+|.++..|+.+.+..
T Consensus       190 -~~~~--~~~~-----------~~~~~~-----~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~  249 (379)
T 4h09_A          190 -YPAA--KTGT-----------EFTIPS-----TVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK  249 (379)
T ss_dssp             -CCTT--CCCS-----------EEECCT-----TCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT
T ss_pred             -cccc--cccc-----------cccccc-----ceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCC
Confidence             0000  0000           000000     000001122334567888877654 4445667788888888888876


Q ss_pred             CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccC
Q 041683          362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDF  441 (743)
Q Consensus       362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  441 (743)
                      + ++.+...+|.++.+|+.+.+..+ +..+...+|.+|++|+.+.+.++.++ .++...|.++.+|+.+.+..+ ++.+-
T Consensus       250 ~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~  325 (379)
T 4h09_A          250 N-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQ  325 (379)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEEC
T ss_pred             C-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEH
Confidence            5 55566678888888888888654 55566678888889999988888776 677777778888998888754 55556


Q ss_pred             CccccCCCCccEEEccCCccccccCccccccccc
Q 041683          442 PIQLCGLAFLQILDVASNSLSGTIPRCINNLSAM  475 (743)
Q Consensus       442 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  475 (743)
                      ..+|.++.+|+.+.+..+ +...-..+|.++..+
T Consensus       326 ~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          326 VYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             TTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             HHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            668888888888888654 554445567666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.10  E-value=1e-08  Score=108.06  Aligned_cols=278  Identities=10%  Similarity=0.064  Sum_probs=156.6

Q ss_pred             hccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCcc
Q 041683          140 QLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQ  219 (743)
Q Consensus       140 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  219 (743)
                      ++....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++ .+...+|.++ +|+.+.+..+ +.......|.. .+
T Consensus        41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~  114 (379)
T 4h09_A           41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD  114 (379)
T ss_dssp             TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred             ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence            456667899998865 466566778999999999999654 65 7777788887 6777777654 44454555544 37


Q ss_pred             ccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCccccCCCCCCCCCCCcccCCCC
Q 041683          220 LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSD  299 (743)
Q Consensus       220 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~  299 (743)
                      |+.+.+..+- .......|... +++.+.+..+ ++ .+....+..+..++.+.+..+........              
T Consensus       115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~--------------  176 (379)
T 4h09_A          115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAEN--------------  176 (379)
T ss_dssp             CSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEET--------------
T ss_pred             cccccCCCcc-ccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeeccc--------------
Confidence            8888876542 22333334443 4666555443 22 23333444455666555554332100000              


Q ss_pred             CCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCc
Q 041683          300 LLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLL  379 (743)
Q Consensus       300 l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  379 (743)
                          .......       ......+.....+..+.+...... .....+..+..|+.+.+..+ +..+...+|.++..|+
T Consensus       177 ----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~  243 (379)
T 4h09_A          177 ----YVLYNKN-------KTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALD  243 (379)
T ss_dssp             ----TEEEETT-------SSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCC
T ss_pred             ----ceecccc-------cceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccce
Confidence                0000000       000111222344555555443322 34455666667777777544 3334555666777777


Q ss_pred             EEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEcc
Q 041683          380 SLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVA  457 (743)
Q Consensus       380 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  457 (743)
                      .+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++...+.++.+|+.+.+.++.+..+...+|.++.+|+.+++.
T Consensus       244 ~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          244 EIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             EEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            7777654 44455566777777777776543 33 4555555566666666666666665555566666666666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=2.7e-09  Score=110.23  Aligned_cols=82  Identities=13%  Similarity=0.272  Sum_probs=43.1

Q ss_pred             ccccEEEccCCcCcccCchhhc---ccCCCCEEeCCCCcCccc----CCCCCCCCCCccEEECcCCcCCCCCCccccC-c
Q 041683          519 NLVRSIDVSKNIFSGEIPVEVT---NLQGLQSLNLSHNLLTGR----IPDNIGVMRSIESLDLSANQLSGQIPQSMSN-L  590 (743)
Q Consensus       519 ~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l  590 (743)
                      +.|+.|++++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+.. +
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al  331 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL  331 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence            3345555555555433222222   356677777777766642    3333445667777777777665432222221 1


Q ss_pred             CCCCeeeCcCCc
Q 041683          591 SFLNHLNLSNNN  602 (743)
Q Consensus       591 ~~L~~L~ls~N~  602 (743)
                        ...+++++++
T Consensus       332 --g~~~~~~~~~  341 (362)
T 2ra8_A          332 --PMKIDVSDSQ  341 (362)
T ss_dssp             --CSEEECCSBC
T ss_pred             --CCEEEecCCc
Confidence              2456777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=6e-09  Score=107.63  Aligned_cols=64  Identities=22%  Similarity=0.289  Sum_probs=36.6

Q ss_pred             CCCCCCEEECcCccCccccchhcc---CCCCCCEEEccCCCCccc----cChhhhcCCCCCCEEECCCCcce
Q 041683          143 RFKRLNSLDLSNTILDGSIPFSLG---QISNLEYLDLSNNKLNGT----VSEIHFVNLTKLAFFRANGNSLI  207 (743)
Q Consensus       143 ~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~  207 (743)
                      .+++|++|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+.    +.. .+.++++|+.|++++|.+.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-HVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-THHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-hcccCCcceEEECCCCcCC
Confidence            356777777776666543333332   356677777777766532    111 2244566777777776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=3.5e-07  Score=84.96  Aligned_cols=60  Identities=22%  Similarity=0.226  Sum_probs=27.1

Q ss_pred             CccEEEccCCcCccc----chhhccCCCCCCEEEC--cCccCcccc----chhccCCCCCCEEEccCCCC
Q 041683          122 ELESLRLGSSQIFGH----LTNQLRRFKRLNSLDL--SNTILDGSI----PFSLGQISNLEYLDLSNNKL  181 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L--s~n~l~~~~----~~~~~~l~~L~~L~L~~n~l  181 (743)
                      .|++|+|++|.+...    +...+...++|++|+|  ++|.++...    ...+...++|++|++++|.+
T Consensus        94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            444445444444322    2233444455555555  445554321    22333345555555555554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.36  E-value=3.3e-07  Score=85.17  Aligned_cols=117  Identities=16%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             chhhcCCCCCCEEEcCCC-ccccc----cCcccccCCCCCCEEEcCCCCcCCcc----cchhccCCCCCCEEEccCCcCc
Q 041683           35 LGWLSKVNDLEFLSVYSN-RLQGN----VSSLGLENLTSIKRLYLSENDELGGK----IPTSFGKLCKLTSFSMRFTKLS  105 (743)
Q Consensus        35 ~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~~l~~L~~L~Ls~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~  105 (743)
                      ...+...+.|++|+|++| .+...    +.. .+...++|++|+|+ +|.+...    +..++...++|++|+|++|.+.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~-~L~~~~~L~~L~Ls-~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAE-ALKTNTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHH-HHTTCCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHH-HHHhCCCcCEEECc-CCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            344566777777777777 66531    222 45566777777777 4455432    2344556677888888888776


Q ss_pred             ccc----hhhhhcccccccCCccEEEc--cCCcCccc----chhhccCCCCCCEEECcCccCc
Q 041683          106 QDI----SEILGIFSACVANELESLRL--GSSQIFGH----LTNQLRRFKRLNSLDLSNTILD  158 (743)
Q Consensus       106 ~~~----~~~l~~l~~~~~~~L~~L~L--~~n~~~~~----~~~~l~~l~~L~~L~Ls~n~l~  158 (743)
                      ..-    ...+....     .|++|+|  ++|.+...    +...+...++|++|+|++|.+.
T Consensus       107 ~~g~~~l~~~L~~n~-----~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          107 GSGILALVEALQSNT-----SLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHGGGGCS-----SCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHHhCC-----CceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            542    22233223     6888888  77877543    3345566788888998888875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.3e-07  Score=92.41  Aligned_cols=89  Identities=27%  Similarity=0.325  Sum_probs=66.7

Q ss_pred             ccccE--EEccCCcCc---ccCchhhcccCCCCEEeCCCCcCcc--cCCCCCCCCCCccEEECcCCcCCCCCCccccCcC
Q 041683          519 NLVRS--IDVSKNIFS---GEIPVEVTNLQGLQSLNLSHNLLTG--RIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLS  591 (743)
Q Consensus       519 ~~L~~--L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  591 (743)
                      +.|..  ++++.|+..   ...+....++++|++|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~  218 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIK  218 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcc
Confidence            33444  677777433   2223333678999999999999997  4556677899999999999999965  3344444


Q ss_pred             --CCCeeeCcCCcccccCCC
Q 041683          592 --FLNHLNLSNNNLVGKIPS  609 (743)
Q Consensus       592 --~L~~L~ls~N~l~~~~p~  609 (743)
                        +|+.|+|++|++++.+|.
T Consensus       219 ~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          219 GLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TSCCSEEECTTSTTGGGCSS
T ss_pred             cCCcceEEccCCcCccccCc
Confidence              999999999999988874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.23  E-value=7.1e-07  Score=87.09  Aligned_cols=79  Identities=23%  Similarity=0.281  Sum_probs=64.4

Q ss_pred             ccccccEEEccCCcCcc--cCchhhcccCCCCEEeCCCCcCcccCCCCCCCCC--CccEEECcCCcCCCCCCc-------
Q 041683          517 ILNLVRSIDVSKNIFSG--EIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMR--SIESLDLSANQLSGQIPQ-------  585 (743)
Q Consensus       517 ~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-------  585 (743)
                      .++.|+.|+|++|++++  .+|..+..+++|+.|+|++|+|++.  +.+..+.  +|++|+|++|.+.+..|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            47789999999999997  4557788999999999999999964  3344444  999999999999976663       


Q ss_pred             cccCcCCCCeee
Q 041683          586 SMSNLSFLNHLN  597 (743)
Q Consensus       586 ~l~~l~~L~~L~  597 (743)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            356678888876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.18  E-value=8e-07  Score=80.19  Aligned_cols=85  Identities=9%  Similarity=0.099  Sum_probs=53.7

Q ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCc-cccccCcccccCC----CCCCEEEcCCCCcCCcccchhccCCC
Q 041683           18 TSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNR-LQGNVSSLGLENL----TSIKRLYLSENDELGGKIPTSFGKLC   92 (743)
Q Consensus        18 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l----~~L~~L~Ls~~~~l~~~~~~~l~~l~   92 (743)
                      ..|++||++++.|+......+.++++|++|+|++|. +++.--. .+..+    ++|++|+|+++..+++.--..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            357777777777766655666777777777777774 5432111 23443    35777777755566665555666677


Q ss_pred             CCCEEEccCCc
Q 041683           93 KLTSFSMRFTK  103 (743)
Q Consensus        93 ~L~~L~L~~n~  103 (743)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            77777777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=5.6e-06  Score=74.64  Aligned_cols=85  Identities=9%  Similarity=0.051  Sum_probs=49.4

Q ss_pred             CCCcEEEccCccccccCCcccCCCCCCCEEeCCCCc-CcccCchhHHh---cccCCcEEEccCCc-CcccCCccccCCCC
Q 041683          376 SSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENE-LVGSIPSWIGE---RFSILKILNLRSNK-FHGDFPIQLCGLAF  450 (743)
Q Consensus       376 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~~~~~~l~~  450 (743)
                      ..|++|++++|.++...-..+..+++|++|+|++|. +++..-..+..   .+++|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666554444455666677777777764 44322222321   02357777777764 55332234566778


Q ss_pred             ccEEEccCCc
Q 041683          451 LQILDVASNS  460 (743)
Q Consensus       451 L~~L~Ls~N~  460 (743)
                      |+.|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            8888888775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.34  E-value=0.00038  Score=59.79  Aligned_cols=60  Identities=20%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             EEeCCCCcCc-ccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCC
Q 041683          547 SLNLSHNLLT-GRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIP  608 (743)
Q Consensus       547 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p  608 (743)
                      .++.+++.++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.+..-
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~   72 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR   72 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence            6677777775 35555432  468888888888887666778888888888888888877543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.17  E-value=0.00095  Score=61.28  Aligned_cols=42  Identities=14%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             CCCCCCEEEcCCCCcCCc----ccchhccCCCCCCEEEccCCcCcc
Q 041683           65 NLTSIKRLYLSENDELGG----KIPTSFGKLCKLTSFSMRFTKLSQ  106 (743)
Q Consensus        65 ~l~~L~~L~Ls~~~~l~~----~~~~~l~~l~~L~~L~L~~n~l~~  106 (743)
                      +-+.|++|+|++++.+..    .+..++..-+.|+.|+|++|.+..
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd   84 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD   84 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh
Confidence            345555566652223332    123344455555666665555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.11  E-value=0.00018  Score=66.17  Aligned_cols=65  Identities=14%  Similarity=0.132  Sum_probs=29.2

Q ss_pred             CCCCCCEEeCCCCcCcccCchhHHhc---ccCCcEEEccCCc---Ccc----cCCccccCCCCccEEEccCCccc
Q 041683          398 NFSSLEVLDLGENELVGSIPSWIGER---FSILKILNLRSNK---FHG----DFPIQLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       398 ~l~~L~~L~Ls~n~i~~~~~~~~~~~---l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~Ls~N~l~  462 (743)
                      .-+.|++|+|++|.|.+..-..+.+.   -+.|++|+|++|.   +..    .+...+..-+.|+.|+++.|.+.
T Consensus        96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A           96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            33455555555555543222222221   2245555555432   221    12223444566677777666543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.62  E-value=0.0028  Score=54.30  Aligned_cols=57  Identities=19%  Similarity=0.292  Sum_probs=47.7

Q ss_pred             cEEEccCCcCc-ccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCC
Q 041683          522 RSIDVSKNIFS-GEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLS  580 (743)
Q Consensus       522 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  580 (743)
                      ..++.+++.++ ..+|..+.  ++|++|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            57899999987 35564432  47999999999999777778999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	743
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-08
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-05
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 90.2 bits (222), Expect = 3e-20
 Identities = 62/290 (21%), Positives = 99/290 (34%), Gaps = 28/290 (9%)

Query: 350 NWLRLRALNLGHNNFTG--SLPMSIGTLSSLLSLNLRNNI-LSGIIPTSFKNFSSLEVLD 406
              R+  L+L   N      +P S+  L  L  L +     L G IP +    + L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
           +     V         +   L  L+   N   G  P  +  L  L  +    N +SG IP
Sbjct: 108 ITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 467 RCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDV 526
               + S +  + +  +  +      +     +                   +       
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS------- 219

Query: 527 SKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQS 586
                                               +G+ +++  LDL  N++ G +PQ 
Sbjct: 220 ----------------DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG 263

Query: 587 MSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGND-LCGDPLSNCT 635
           ++ L FL+ LN+S NNL G+IP    LQ F  S++A N  LCG PL  CT
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.9 bits (203), Expect = 8e-18
 Identities = 58/277 (20%), Positives = 88/277 (31%), Gaps = 18/277 (6%)

Query: 143 RFKRLNSLDLSNTILDG--SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFR 200
           +  R+N+LDLS   L     IP SL  +  L +L +                LT+L +  
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 201 ANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPR 260
               ++   I         L  L+     L    P  + S   L  +     RIS  IP 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167

Query: 261 GFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLI 320
            + +    +  + IS N++ G IP             S                ++    
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR---------------NMLEGD 212

Query: 321 CQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLS 380
                 S+          N              L  L+L +N   G+LP  +  L  L S
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 381 LNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIP 417
           LN+  N L G IP    N    +V     N+ +   P
Sbjct: 273 LNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.0 bits (180), Expect = 7e-15
 Identities = 64/281 (22%), Positives = 110/281 (39%), Gaps = 6/281 (2%)

Query: 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD--IPDCWMNWLRLRALNLGHN-NF 364
           + +  + +   ++C  +  +  +  L LS  N      IP    N   L  L +G   N 
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 365 TGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERF 424
            G +P +I  L+ L  L + +  +SG IP       +L  LD   N L G++P  I    
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSL 148

Query: 425 SILKILNLRSNKFHGDFPIQLCGLAFLQI-LDVASNSLSGTIPRCINNLSAMAITDSYDQ 483
             L  +    N+  G  P      + L   + ++ N L+G IP    NL+   +  S + 
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQ 543
                S L    ++      +       +    +   +  +D+  N   G +P  +T L+
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIP 584
            L SLN+S N L G IP   G ++  +    + N+     P
Sbjct: 269 FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRL 54
           L  N+  G +P  L  L  L  L++S N L    +     +   +  +  +N+ 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNL-CGEIPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 128 LGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKL 181
           L +++I+G L   L + K L+SL++S   L G IP   G +   +    +NNK 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 4e-17
 Identities = 52/343 (15%), Positives = 96/343 (27%), Gaps = 37/343 (10%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
             ++ +L      +  SI   +  ++NL  ++ SNN+L       +   L  +       
Sbjct: 43  LDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
             +    N   +    L   ++             + +   N +   S        +   
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 264 NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQG 323
                     ++       +    N    +              +NN +S      I   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL-- 218

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
                N++ L L+ N           +   L  L+L +N  +   P  +  L+ L  L L
Sbjct: 219 ----TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 384 RNNILSGIIP--------------------TSFKNFSSLEVLDLGENELVGSIPSWIGER 423
             N +S I P                    +   N  +L  L L  N +    P      
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV---SS 327

Query: 424 FSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIP 466
            + L+ L   +NK        L  L  +  L    N +S   P
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 79.3 bits (194), Expect = 2e-16
 Identities = 70/403 (17%), Positives = 132/403 (32%), Gaps = 47/403 (11%)

Query: 16  NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL-GLENLTSIKRLYL 74
            L       L    +  TV    + ++ +  L          + S+ G+E L ++ ++  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQINF 73

Query: 75  SENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILG-------IFSACVANELESLR 127
           S N +L    P     L KL    M   +++               +F+  + +      
Sbjct: 74  SNN-QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 128 LGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSE 187
           L +       +N +     L+ L     +  G+    L  ++NL  L+  +   N     
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 188 IHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDL 247
                LT L    A  N +        +    L  L L    L  +    L S   L DL
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL--KDIGTLASLTNLTDL 246

Query: 248 DISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDL 307
           D+++ +IS   P      +     L +  NQI    P     ++  +    +        
Sbjct: 247 DLANNQISNLAPLSGLTKLT---ELKLGANQISNISPLAGLTALTNLELNEN-------- 295

Query: 308 SNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS 367
                            +   N+ +L L  NN S   P    +  +L+ L   +N  +  
Sbjct: 296 ---------QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD- 343

Query: 368 LPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN 410
              S+  L+++  L+  +N +S + P    N + +  L L + 
Sbjct: 344 -VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 8e-11
 Identities = 58/339 (17%), Positives = 119/339 (35%), Gaps = 41/339 (12%)

Query: 271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNI 330
            +N S NQ+    P  +   +  I   ++ +  I  L+N      +     Q  +     
Sbjct: 70  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSG 390
               L++   S +          L +L         +    +  L++L  L++ +N    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--V 187

Query: 391 IIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAF 450
              +     ++LE L    N++    P  I    + L  L+L  N+        L  L  
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTN 242

Query: 451 LQILDVASNSLSGTIPRC-INNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG 509
           L  LD+A+N +S   P   +  L+ + +  +                             
Sbjct: 243 LTDLDLANNQISNLAPLSGLTKLTELKLGANQ---------------------------- 274

Query: 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSI 569
            +   + +  L    ++  N    E    ++NL+ L  L L  N ++   P  +  +  +
Sbjct: 275 -ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 331

Query: 570 ESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIP 608
           + L  + N++S     S++NL+ +N L+  +N +    P
Sbjct: 332 QRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 39/203 (19%), Positives = 74/203 (36%), Gaps = 24/203 (11%)

Query: 2   SGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL 61
           + NQ     P     LT+L  L L+ N+L    +G L+ + +L  L + +N++       
Sbjct: 205 TNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN---LA 257

Query: 62  GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN 121
            L  LT +  L L   +++    P +          +    +    I             
Sbjct: 258 PLSGLTKLTELKLG-ANQISNISPLAGLTALTNLELNENQLEDISPI---------SNLK 307

Query: 122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKL 181
            L  L L  + I     + +    +L  L  +N  +  S   SL  ++N+ +L   +N++
Sbjct: 308 NLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQI 363

Query: 182 NGTVSEIHFVNLTKLAFFRANGN 204
           +         NLT++     N  
Sbjct: 364 SD---LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 21/179 (11%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L+GNQ +      L +LT+L  LDL++N++++  L  LS +  L  L + +N++      
Sbjct: 226 LNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQIS----- 276

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             +  L  +  L   E +E   +  +    L  LT  ++ F  +S DIS +  +      
Sbjct: 277 -NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS-DISPVSSLTK---- 330

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNN 179
             L+ L   ++++     + L     +N L   +  +    P  L  ++ +  L L++ 
Sbjct: 331 --LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 1e-14
 Identities = 39/283 (13%), Positives = 92/283 (32%), Gaps = 12/283 (4%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
           ++   +   L L  N  +      + N   L  L L +N  +   P +   L  L  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 384 RNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI 443
             N L  +     K    L V +    ++  S+ + + +   +   L     K  G    
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV--ELGTNPLKSSGIENG 144

Query: 444 QLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDA 503
              G+  L  + +A  +++        +L+ + +  +    V   S       +++    
Sbjct: 145 AFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 504 SLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTG------ 557
           + +         +  +L      +  +   ++P  + + + +Q + L +N ++       
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDF 262

Query: 558 RIPDNIGVMRSIESLDLSANQLSGQ--IPQSMSNLSFLNHLNL 598
             P       S   + L +N +      P +   +     + L
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.1 bits (178), Expect = 1e-14
 Identities = 50/293 (17%), Positives = 97/293 (33%), Gaps = 28/293 (9%)

Query: 123 LESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLN 182
              L L +++I        +  K L++L L N  +    P +   +  LE L LS N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 183 GTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQR 242
               ++      +      N  + + K   N +    +  L               Q  +
Sbjct: 93  ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 243 ELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLG 302
           +L+ + I+ T I+  IP+G   S+     L++ GN+I             L         
Sbjct: 151 KLSYIRIADTNIT-TIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLGL---- 202

Query: 303 PIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHN 362
                     S +    +  G   +          NN    +P    +   ++ + L +N
Sbjct: 203 ----------SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

Query: 363 NFTG------SLPMSIGTLSSLLSLNLRNNILS--GIIPTSFKNFSSLEVLDL 407
           N +         P      +S   ++L +N +    I P++F+       + L
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 20/276 (7%)

Query: 9   QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTS 68
           ++P  L        LDL +N++     G    + +L  L + +N++           L  
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVK 80

Query: 69  IKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRL 128
           ++RLYLS+N +L          L +L       TK+ +       +F+      +  L  
Sbjct: 81  LERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRK------SVFNGLNQMIVVELGT 133

Query: 129 GSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEI 188
              +  G      +  K+L+ + +++T +  +IP  L    +L  L L  NK+    +  
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAA- 189

Query: 189 HFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLD 248
               L  LA    + NS+    N +      L  L L +  L  + P  L   + +  + 
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVY 248

Query: 249 ISSTRIS-----AKIPRGFWNSIYQYFYLNISGNQI 279
           + +  IS        P G+      Y  +++  N +
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 2e-09
 Identities = 40/247 (16%), Positives = 86/247 (34%), Gaps = 20/247 (8%)

Query: 217 PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
           P    +L+L++  +        ++ + L+ L + + +IS   P  F   + +   L +S 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSK 88

Query: 277 NQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS 336
           NQ+     K       L    +++      + N      +  L                 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN-------------- 134

Query: 337 KNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSF 396
               SG     +    +L  + +   N T    +  G   SL  L+L  N ++ +   S 
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASL 191

Query: 397 KNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDV 456
           K  ++L  L L  N +       +     + ++    +N      P  L    ++Q++ +
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYL 249

Query: 457 ASNSLSG 463
            +N++S 
Sbjct: 250 HNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.3 bits (111), Expect = 4e-06
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 545 LQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
              L+L +N +T     +   ++++ +L L  N++S   P + + L  L  L LS N L
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 18/88 (20%), Positives = 32/88 (36%)

Query: 516 SILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLS 575
            +      +D+  N  +     +  NL+ L +L L +N ++   P     +  +E L LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 576 ANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
            NQL     +    L  L         +
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKV 115

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 8e-12
 Identities = 47/283 (16%), Positives = 84/283 (29%), Gaps = 28/283 (9%)

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNL 383
                  + + L  N  S      +     L  L L  N        +   L+ L  L+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 384 RNNILSGII-PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFP 442
            +N     + P +F     L  L L    L    P       + L+ L L+ N       
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA-LQYLYLQDNALQALPD 146

Query: 443 IQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFED 502
                L  L  L +  N +S    R    L ++     +                     
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN------------------- 187

Query: 503 ASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDN 562
               +  V       L  + ++ +  N  S      +  L+ LQ L L+ N         
Sbjct: 188 ---RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRA 243

Query: 563 IGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG 605
             +   ++    S++++   +PQ ++         L+ N+L G
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 2e-10
 Identities = 47/274 (17%), Positives = 96/274 (35%), Gaps = 8/274 (2%)

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
            +        ++P+ I    +   + L  N +S +   SF+   +L +L L  N L    
Sbjct: 16  TSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 417 PSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMA 476
            +       + ++    + +     P    GL  L  L +    L    P     L+A+ 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 477 ITDSYDQAV--ILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
                D A+  +   + R  G           +  V       L+ +  + + +N  +  
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 535 IPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLN 594
            P    +L  L +L L  N L+    + +  +R+++ L L+ N       ++    ++L 
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQ 251

Query: 595 HLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCG 628
               S++ +   +P     +       A NDL G
Sbjct: 252 KFRGSSSEVPCSLPQRLAGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 8e-10
 Identities = 40/268 (14%), Positives = 73/268 (27%), Gaps = 18/268 (6%)

Query: 147 LNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSL 206
              + L    +      S     NL  L L +N L    +              ++   L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 207 IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSI 266
                  +    +L  L L  C L    P   +    L  L +    + A     F + +
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-L 152

Query: 267 YQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENF 326
               +L + GN+I   +P+     +  +            L  N ++    H        
Sbjct: 153 GNLTHLFLHGNRIS-SVPERAFRGLHSLD--------RLLLHQNRVAHVHPHAFRDLGRL 203

Query: 327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNN 386
                      NN S    +       L+ L L  N +           + L      ++
Sbjct: 204 MTLYL----FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSS 258

Query: 387 ILSGIIPTSFKNFSSLEVLDLGENELVG 414
            +   +P         ++  L  N+L G
Sbjct: 259 EVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 4e-07
 Identities = 47/262 (17%), Positives = 85/262 (32%), Gaps = 22/262 (8%)

Query: 9   QIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTS 68
            +P  +    + + + L  N ++           +L  L ++SN L    ++        
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 69  IKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRL 128
            +   LS+N +L    P +F  L +L +       L +   + LG         L+ L L
Sbjct: 83  EQL-DLSDNAQLRSVDPATFHGLGRLHTLH-----LDRCGLQELGPGLFRGLAALQYLYL 136

Query: 129 GSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEI 188
             + +     +  R    L  L L    +      +   + +L+ L L  N++       
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 189 HFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELR------SCHLGPRFPLWLQSQR 242
            F +L +L       N+L         P   L  L L        C   P    WLQ   
Sbjct: 197 -FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARP-LWAWLQK-- 252

Query: 243 ELNDLDISSTRISAKIPRGFWN 264
                  SS+ +   +P+    
Sbjct: 253 ----FRGSSSEVPCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 9e-07
 Identities = 50/312 (16%), Positives = 90/312 (28%), Gaps = 65/312 (20%)

Query: 271 YLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNI 330
            + + GN+I   +P     +   +T                 S  +  +          +
Sbjct: 36  RIFLHGNRI-SHVPAASFRACRNLTI------------LWLHSNVLARIDAAAFTGLALL 82

Query: 331 EFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILS 389
           E L LS N     +     + L  L  L+L         P     L++L  L L++N L 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 390 GIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLA 449
            +   +F++  +L  L L  N +              L  L L  N+     P     L 
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 450 FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKG 509
            L  L + +N+LS      +  L A+                                  
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRAL---------------------------------- 227

Query: 510 VLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSI 569
                       + + ++ N +  +          LQ    S + +   +P     +   
Sbjct: 228 ------------QYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQR---LAGR 271

Query: 570 ESLDLSANQLSG 581
           +   L+AN L G
Sbjct: 272 DLKRLAANDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 49/357 (13%), Positives = 87/357 (24%), Gaps = 39/357 (10%)

Query: 116 SACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD 175
                   E   +  S++   L  Q         L+L+N  L  S+P       +LE L 
Sbjct: 15  RNAPPGNGEQREMAVSRLRDCLDRQAHE------LELNNLGL-SSLPELPP---HLESLV 64

Query: 176 LSNNKLNGTVSEI-----HFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHL 230
            S N L              V+   L         L +    N        +       +
Sbjct: 65  ASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI 124

Query: 231 GPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPS 290
                  L+   +L          + ++          +     + N     +P      
Sbjct: 125 IDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL 184

Query: 291 MPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFS--------- 341
             ++   + L       +   L+                     L+  +           
Sbjct: 185 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQ 244

Query: 342 -----GDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSF 396
                    + +     L       N  +  +        SL  LN+ NN L  +     
Sbjct: 245 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA--- 301

Query: 397 KNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQI 453
                LE L    N L   +P         LK L++  N     FP     +  L++
Sbjct: 302 -LPPRLERLIASFNHL-AEVPELPQN----LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 527 SKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQS 586
             N  S EI         L+ LN+S+N L   +P        +E L  S N L+ ++P+ 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPEL 322

Query: 587 MSNLSFLNHLNLSNNNL 603
             NL     L++  N L
Sbjct: 323 PQNLK---QLHVEYNPL 336

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 1e-08
 Identities = 48/440 (10%), Positives = 89/440 (20%), Gaps = 18/440 (4%)

Query: 1   LSGNQFQGQIPSRL-GNLTSLKYLDLSSNELNSTVLGWLSKV----NDLEFLSVYSNRLQ 55
           +   +      + L   L   + + L    L       +S        L  L++ SN L 
Sbjct: 9   IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 68

Query: 56  G----NVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEI 111
                 V          I++L L      G         L  L +        +      
Sbjct: 69  DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 128

Query: 112 LGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNL 171
           L +    + +    L     +              +         L  S          +
Sbjct: 129 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 188

Query: 172 EYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLG 231
               L ++       ++    +T        G                       +    
Sbjct: 189 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 248

Query: 232 PRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSM 291
                  + +         + +    + R                     G        +
Sbjct: 249 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 308

Query: 292 PLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNW 351
                   L       +    S     L          I   +L                
Sbjct: 309 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 368

Query: 352 LRLRALNLGHNNFTG----SLPMSIGTLSSLLSLNLRNNILSGIIPTSF-----KNFSSL 402
             LR L L   + +     SL  ++    SL  L+L NN L             +    L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 403 EVLDLGENELVGSIPSWIGE 422
           E L L +      +   +  
Sbjct: 429 EQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 2e-08
 Identities = 53/448 (11%), Positives = 106/448 (23%), Gaps = 19/448 (4%)

Query: 19  SLKYLDLSSNELNSTVLGWL-SKVNDLEFLSVYSNRLQGN-VSSLG--LENLTSIKRLYL 74
            ++ LD+   EL+      L   +   + + +    L       +   L    ++  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 75  SENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANE----LESLRLGS 130
             N+ LG        +  +  S  ++   L        G             L+ L L  
Sbjct: 63  RSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 131 SQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHF 190
           + +       L          L    L+     +         L    +    TVS    
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 191 VNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDIS 250
                    +   +S               +      C +        +     N L   
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 251 STRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFD--LS 308
                        + +   +           G       +   +   S     + D    
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 309 NNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSL 368
               +        +     +         +  S    + ++  L++    L         
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 369 PMSIGTLSSLLSLNLRNNILSGI----IPTSFKNFSSLEVLDLGENELVGSIPSWIGERF 424
                  S L  L L +  +S      +  +     SL  LDL  N L  +    + E  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 425 ----SILKILNLRSNKFHGDFPIQLCGL 448
                +L+ L L    +  +   +L  L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 56/447 (12%), Positives = 114/447 (25%), Gaps = 17/447 (3%)

Query: 43  DLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSEN---DELGGKIPTSFGKLCKLTSFSM 99
           D++ L +    L     +  L  L   + + L +    +     I ++      L   ++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 100 RFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDG 159
           R  +L       +       + +++ L L +  + G     L    R         + D 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 160 SIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQ 219
            +  +  Q+     LD         +        +             FK          
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 220 LTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLN-ISGNQ 278
              + +    L          + E   +   + R    I     +        N +    
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 279 IYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKN 338
           +    P   +PS  L T      G       +           +  + + N    + ++ 
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 339 NFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTS--- 395
                +                           +     LL L + NN L          
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 396 --FKNFSSLEVLDLGENELVGSIPSWIGERFSI---LKILNLRSNKFHGDFPIQLCG--- 447
              +  S L VL L + ++  S  S +         L+ L+L +N       +QL     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 448 --LAFLQILDVASNSLSGTIPRCINNL 472
                L+ L +     S  +   +  L
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 8e-07
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 518 LNLVRSIDVSKNIFSGEIPVEV-TNLQGLQSLNLSHNLLTGR----IPDNIGVMRSIESL 572
           L++ +S+D+     S     E+   LQ  Q + L    LT      I   + V  ++  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 573 DLSANQLSGQIPQSMSNLSFLNHLNLSNNNL 603
           +L +N+L       +          +   +L
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (116), Expect = 9e-07
 Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 545 LQSLNLSHNLLT-GRIPDNIGVMRSIESLDLSANQLSGQ----IPQSMSNLSFLNHLNLS 599
           +QSL++    L+  R  + + +++  + + L    L+      I  ++     L  LNL 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 600 NNNLVGKIPSS 610
           +N L       
Sbjct: 64  SNELGDVGVHC 74

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 14/96 (14%), Positives = 37/96 (38%), Gaps = 9/96 (9%)

Query: 352 LRLRALNLGHNNFTGS-LPMSIGTLSSLLSLNLRNNILSGI----IPTSFKNFSSLEVLD 406
           L +++L++     + +     +  L     + L +  L+      I ++ +   +L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 407 LGENELVGSIPSWIGERFSI----LKILNLRSNKFH 438
           L  NEL       + +        ++ L+L++    
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 9/79 (11%)

Query: 541 NLQGLQSLNLSHNLLTGR----IPDNIGVMRSIESLDLSANQLSGQIPQSMS-----NLS 591
               L+ L L+   ++      +   +    S+  LDLS N L       +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 592 FLNHLNLSNNNLVGKIPSS 610
            L  L L +     ++   
Sbjct: 427 LLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 54/473 (11%), Positives = 121/473 (25%), Gaps = 48/473 (10%)

Query: 147 LNSLDLS-NTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNS 205
           + SLD+    + D      L  +   + + L +  L    +E    +++           
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL----TEARCKDISSA--------- 50

Query: 206 LIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL-----QSQRELNDLDISSTRISAKIPR 260
              ++NP       L  L LRS  LG      +         ++  L + +  ++     
Sbjct: 51  --LRVNPA------LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 261 GFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDL-------LGPIFDLSNNALS 313
              +++     L                     +  P             +   S   L+
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

Query: 314 GSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIG 373
             +       E   +N +  +         + D       L+  + G  +        I 
Sbjct: 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 222

Query: 374 TLSSLLSLNLR---NNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKIL 430
              + L             G+             L        G      G+   +L+  
Sbjct: 223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 282

Query: 431 NLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSS 490
                       +   G   L    +       ++     + +A   +            
Sbjct: 283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 342

Query: 491 LRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE----IPVEVTNLQGLQ 546
           L  +  +   EDA   ++ +        +++R + ++    S      +   +     L+
Sbjct: 343 LELQISNNRLEDAG--VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400

Query: 547 SLNLSHNLLTGRIPDNIG-----VMRSIESLDLSANQLSGQIPQSMSNLSFLN 594
            L+LS+N L       +          +E L L     S ++   +  L    
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-05
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 327 SNNIEFLKLSKNNFSGDIPDCWMNWLR-LRALNLGHNNFTG----SLPMSIGTLSSLLSL 381
           S +I+ L +     S       +  L+  + + L     T      +  ++    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 382 NLRNNILSGIIPTSF-----KNFSSLEVLDL 407
           NLR+N L  +               ++ L L
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 39/267 (14%), Positives = 86/267 (32%), Gaps = 17/267 (6%)

Query: 357 LNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSI 416
           L+L   N    +   +     +++     + +   +   F  F  ++ +DL  + +  S 
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 417 PSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPR--------- 467
              I  + S L+ L+L   +        L   + L  L+++  S                
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 468 -CINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDV 526
               NLS           V +     +  Q  +      + K  L         +  +D+
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 527 SKNI-FSGEIPVEVTNLQGLQSLNLSH-NLLTGRIPDNIGVMRSIESLDLSANQLSGQIP 584
           S ++    +   E   L  LQ L+LS    +       +G + ++++L +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 585 QSMSNLSFLNHLNLSNNNLVGKIPSST 611
                L    HL ++ ++       + 
Sbjct: 243 LLKEALP---HLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 4e-08
 Identities = 37/286 (12%), Positives = 93/286 (32%), Gaps = 25/286 (8%)

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT 365
           DL+   L   +      G   S  +   +  ++     + +   +  R++ ++L ++   
Sbjct: 6   DLTGKNLHPDVT-----GRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE 59

Query: 366 G-SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERF 424
             +L   +   S L +L+L    LS  I  +    S+L  L+L          S    + 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF----SEFALQT 115

Query: 425 SILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQA 484
            +     L                  + +  V+       +     NL    ++    + 
Sbjct: 116 LLSSCSRLDELNLS-WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 485 VILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSK-NIFSGEIPVEVTNLQ 543
             L     S+            +K    +    LN ++ + +S+      E  +E+  + 
Sbjct: 175 PNLVHLDLSDSVM---------LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 225

Query: 544 GLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSN 589
            L++L +   +  G +     +  ++  L ++ +  +     ++ N
Sbjct: 226 TLKTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 39/281 (13%), Positives = 82/281 (29%), Gaps = 11/281 (3%)

Query: 125 SLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGT 184
           +L L    +   +T +L   + + +     + +D  +         ++++DLSN+ +  +
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVS 61

Query: 185 VSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQREL 244
                    +KL      G  L   I         L  L L  C     F          
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSC 120

Query: 245 NDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPI 304
           + LD  +                 +    I+   + G         +  +      L  +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 305 FDLSNNALSGSIFHLICQGENFSNNIEFLKLSK-NNFSGDIPDCWMNWLRLRALNLGHNN 363
               +  L    F          N ++ L LS+  +   +          L+ L +    
Sbjct: 181 DLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV 404
             G+L +      +L  L +  +  + I   +  N  + E+
Sbjct: 237 PDGTLQL---LKEALPHLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 34/242 (14%), Positives = 69/242 (28%), Gaps = 7/242 (2%)

Query: 23  LDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG 82
           LDL+   L+  V G L     +       + +   ++     +   ++ + LS +     
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSVIEVS 61

Query: 83  KIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSA---CVANELESLRLGSSQIFGHLTN 139
            +     +  KL + S+   +LS  I   L   S       +        + Q      +
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 140 QLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFF 199
           +L         D +   +  ++      I+ L       N     +S +       +   
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 200 RANGNSLIFKINPNWVPPFQLTVLELRSC-HLGPRFPLWLQSQRELNDLDISSTRISAKI 258
            ++   L       +     L  L L  C  + P   L L     L  L +        +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 259 PR 260
             
Sbjct: 242 QL 243

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 32/238 (13%), Positives = 71/238 (29%), Gaps = 14/238 (5%)

Query: 174 LDLSNNKLNGTV-SEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGP 232
           LDL+   L+  V   +    +      R+  +  + +       PF++  ++L +  +  
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH----FSPFRVQHMDLSNSVIEV 60

Query: 233 R-FPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSM 291
                 L    +L +L +   R+S  I      ++ +   L         G  +F   ++
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVN----TLAKNSNLVRLNLSGCSGFSEFALQTL 116

Query: 292 PLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNW 351
              ++ S L         +     +   +         +      KN    D+       
Sbjct: 117 L--SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 352 LRLRALNLGHN-NFTGSLPMSIGTLSSLLSLNLRN-NILSGIIPTSFKNFSSLEVLDL 407
             L  L+L  +             L+ L  L+L     +            +L+ L +
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV 232

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 18/162 (11%), Positives = 48/162 (29%), Gaps = 7/162 (4%)

Query: 546 QSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVG 605
           Q+L+L+   L   +   + + + + +     + +   + +  S    + H++LSN+ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 606 KIPSS-----TQLQSFGASSFAGNDLCGDPLSNCTEKNVLVPEDENGDGNEDDDEDGVDW 660
                     ++LQ+        +D   + L+  +    L     +G             
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120

Query: 661 LLYISMALGFVVGFWCFIGSLLINRRWRCKYCHFLDRLGDGC 702
                + L +   F      + +           L       
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 162

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.004
 Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 30/215 (13%)

Query: 3   GNQFQGQIPSRLGNLTSLKYLDLSSNELN-STVLGWLSKVNDLEFLSVYSNRLQGNVSSL 61
              F  Q  +   +   ++++DLS++ +  ST+ G LS+ + L+ LS+   RL   + + 
Sbjct: 31  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

Query: 62  GLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVAN 121
            L   +++ RL LS           +    C                  +    +     
Sbjct: 91  -LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 149

Query: 122 ELESLRLG---------------------------SSQIFGHLTNQLRRFKRLNSLDLSN 154
             +    G                           S  +      +  +   L  L LS 
Sbjct: 150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 209

Query: 155 -TILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEI 188
              +       LG+I  L+ L +     +GT+  +
Sbjct: 210 CYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 31/236 (13%)

Query: 345 PDCWMNWL-RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLE 403
           P C ++ +     +N    N T +LP  +        L+L  N+L      +   ++ L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 404 VLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG 463
            L+L              +    L +L       +    + L                  
Sbjct: 59  QLNL------DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL----------------- 95

Query: 464 TIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRS 523
                      +          +   +LR  G+ +        +K +     +    +  
Sbjct: 96  ---GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 524 IDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQL 579
           + ++ N  +      +  L+ L +L L  N L   IP        +    L  N  
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 538 EVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLN 597
           EV+ +     +N     LT  +P ++   +    L LS N L      ++   + L  LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 598 LSNNN 602
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 1e-05
 Identities = 32/194 (16%), Positives = 54/194 (27%), Gaps = 18/194 (9%)

Query: 217 PFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISG 276
           P   T+L L    L       L     L  L++    ++     G    +      +   
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 277 NQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLS 336
             +          ++  ++                    +  L          ++ L L 
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNR-----------------LTSLPLGALRGLGELQELYLK 132

Query: 337 KNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSF 396
            N      P       +L  L+L +NN T      +  L +L +L L+ N L   IP  F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 397 KNFSSLEVLDLGEN 410
                L    L  N
Sbjct: 192 FGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 32/182 (17%), Positives = 50/182 (27%), Gaps = 11/182 (6%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           LS N       + L   T L  L+L   EL       L     L  L           S 
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAELT-----KLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L        +     + L      +   L +L    ++  +L      +L        
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL-- 150

Query: 121 NELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNK 180
              E L L ++ +       L   + L++L L       +IP        L +  L  N 
Sbjct: 151 ---EKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206

Query: 181 LN 182
             
Sbjct: 207 WL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 32/210 (15%), Positives = 56/210 (26%), Gaps = 22/210 (10%)

Query: 144 FKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANG 203
            K    L LS  +L      +L   + L  L+L   +L     +     L  L       
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 204 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFW 263
            SL                    +           + Q      +         +P G  
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-----TLPPGLL 144

Query: 264 NSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQG 323
               +   L+++ N +        N    L T           L  N+      + I +G
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDT---------LLLQENS-----LYTIPKG 190

Query: 324 ENFSNNIEFLKLSKNNFSGDIPDCWMNWLR 353
              S+ + F  L  N +     +C + + R
Sbjct: 191 FFGSHLLPFAFLHGNPWLC---NCEILYFR 217

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 19/199 (9%)

Query: 242 RELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLL 301
           ++   L +S   +             +   LN+   ++         P +  +    +  
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN-- 87

Query: 302 GPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH 361
                             +         +  L +S N  +            L+ L L  
Sbjct: 88  --------------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG 421
           N      P  +     L  L+L NN L+ +         +L+ L L EN L  +IP    
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 422 ERFSILKILNLRSNKFHGD 440
               +L    L  N +  +
Sbjct: 193 -GSHLLPFAFLHGNPWLCN 210

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 39/321 (12%), Positives = 83/321 (25%), Gaps = 23/321 (7%)

Query: 137 LTNQLRRFKRLNSLDLS-NTILD---GSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVN 192
           +   L     +  + LS NTI       +  ++    +LE  + S+        EI    
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 193 LTKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELN-DLDISS 251
              L            +++ N   P     L        P   L+L +           +
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 252 TRISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNA 311
             +          +      +    N++  G  K    +         +      +    
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 312 LSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMS 371
           +   +   +   +             +  S  +     +W  LR L L     +     +
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 372 IG------TLSSLLSLNLRNNILSGIIPTS-----FKNFSSLEVLDLGENELVGSIPSWI 420
           +           L +L L+ N +      +      +    L  L+L  N          
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS------- 315

Query: 421 GERFSILKILNLRSNKFHGDF 441
            E   + +I  + S +  G+ 
Sbjct: 316 EEDDVVDEIREVFSTRGRGEL 336

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 34/325 (10%), Positives = 90/325 (27%), Gaps = 22/325 (6%)

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGD----IPDCWMNWLRLRALNLGH 361
            L  +A++      +       ++++ + LS N    +    + +   +   L       
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG 421
                        L  LL   L+   L  +  +              +  L+  +     
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG------PTAQEPLIDFLSKHTP 122

Query: 422 ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSY 481
                L    L                   +  +             + N S      ++
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 482 DQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTN 541
               +L++    +      E    ++   L     +  L    +   ++ S  + + + +
Sbjct: 183 QSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 542 LQGLQSLNLSHNLLTGRIPDNIGVM------RSIESLDLSANQLSGQIPQSM-----SNL 590
              L+ L L+  LL+ R    +           +++L L  N++     +++       +
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 591 SFLNHLNLSNNNLVGKIPSSTQLQS 615
             L  L L+ N    +     +++ 
Sbjct: 302 PDLLFLELNGNRFSEEDDVVDEIRE 326

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 41/245 (16%), Positives = 81/245 (33%), Gaps = 33/245 (13%)

Query: 163 FSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTV 222
           F    ++N   +    + +  TV++     +T L+ F                    +T 
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTG-----------------VTT 55

Query: 223 LELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYGG 282
           +E             +Q    L  L++   +I+   P      I +          +   
Sbjct: 56  IE------------GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAI 103

Query: 283 IPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSG 342
                  ++ L +T    + P+  LSN  +     + I      +       LS  N   
Sbjct: 104 AGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV 163

Query: 343 DIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSL 402
                  N  +L  L    N  +   P  + +L +L+ ++L+NN +S + P    N S+L
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 403 EVLDL 407
            ++ L
Sbjct: 220 FIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 17/226 (7%)

Query: 375 LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRS 434
           L++ + +    + ++  +  +  +   +  L      +  +I     +  + L  L L+ 
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELKD 72

Query: 435 NKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSE 494
           N+     P++         L          I    +  +    +        L       
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG----- 127

Query: 495 GQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNL 554
                      +    +   + +  L     +S           + NL  L +L    N 
Sbjct: 128 ---LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 555 LTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN 600
           ++   P  +  + ++  + L  NQ+S   P  ++N S L  + L+N
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 8e-05
 Identities = 33/230 (14%), Positives = 77/230 (33%), Gaps = 20/230 (8%)

Query: 350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE 409
                  +  G +N T ++  +   L  + +L+     ++ I     +  ++L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 410 NEL-VGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRC 468
           N++   +    + +   +    N   N         +  L            L+G     
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 469 INNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSK 528
           +  L    IT+    A +      S G +++ +   L     L    +  N +  I    
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS--- 189

Query: 529 NIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQ 578
                     + +L  L  ++L +N ++   P  +    ++  + L+ NQ
Sbjct: 190 ---------PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 25/203 (12%), Positives = 63/203 (31%), Gaps = 13/203 (6%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
              +     +     +L  +  L      + +  +  +  +N+L  L +  N++      
Sbjct: 26  AGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQITDLAPL 81

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVA 120
             L  +T ++       +        S   L   ++     T L+   +  +        
Sbjct: 82  KNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQI 141

Query: 121 NELESLRLGSSQIFGHLTNQ-------LRRFKRLNSLDLSNTILDGSIPFSLGQISNLEY 173
             +  L   ++  +  + N        L    +L +L   +  +    P     + NL  
Sbjct: 142 TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL--ASLPNLIE 199

Query: 174 LDLSNNKLNGTVSEIHFVNLTKL 196
           + L NN+++      +  NL  +
Sbjct: 200 VHLKNNQISDVSPLANTSNLFIV 222

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 36/255 (14%), Positives = 73/255 (28%), Gaps = 25/255 (9%)

Query: 355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414
           R      +  T  +P  +    + + L      L  I   +F  F  LE +++ +N+++ 
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 415 SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSA 474
            I + +      L  + +           +           + SN+    +P      S 
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 475 MAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE 534
             +       + +++  R+      FE   L +                    KN     
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLN-------------------KNGIQEI 168

Query: 535 IPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLN 594
                   Q  +     +N L     D          LD+S  ++       + NL  L 
Sbjct: 169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 228

Query: 595 HLNLSNNNLVGKIPS 609
             +  N     K+P+
Sbjct: 229 ARSTYNL---KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 29/260 (11%), Positives = 52/260 (20%), Gaps = 38/260 (14%)

Query: 148 NSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLI 207
                  + +   IP  L    N   L     KL   + +  F     L     + N ++
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVL 66

Query: 208 FKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIY 267
             I  +                    +                            + ++ 
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINP-----------------------EAFQNLP 103

Query: 268 QYFYLNISGNQIYGGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFS 327
              YL IS   I          S+  +         I                      S
Sbjct: 104 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-----------TIERNSFVGLS 152

Query: 328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNI 387
                L L+KN         +            +NN            S  + L++    
Sbjct: 153 FESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 212

Query: 388 LSGIIPTSFKNFSSLEVLDL 407
           +  +     +N   L     
Sbjct: 213 IHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 1/90 (1%)

Query: 347 CWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD 406
                     L L  N        +             NN L  +    F   S   +LD
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 407 LGENELVGSIPSWIGERFSILKILNLRSNK 436
           +    +  S+PS+  E    L+  +  + K
Sbjct: 208 ISRTRIH-SLPSYGLENLKKLRARSTYNLK 236

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 31/156 (19%), Positives = 60/156 (38%), Gaps = 8/156 (5%)

Query: 306 DLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFT 365
            L++N                  ++  L+L +N  +G  P+ +     ++ L LG N   
Sbjct: 35  LLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 366 GSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFS 425
                    L  L +LNL +N +S ++P SF++ +SL  L+L  N    +        + 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151

Query: 426 ILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSL 461
             +  +L         P ++     +QI D+  +  
Sbjct: 152 --RKKSLNGGAARCGAPSKVRD---VQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 32/188 (17%), Positives = 55/188 (29%), Gaps = 20/188 (10%)

Query: 148 NSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLI 207
            ++D +   L   IP  +    +   L L++N+L    S+  F  L  L       N L 
Sbjct: 11  TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 208 FKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIY 267
                 +     +  L+L    +            +L  L++   +IS  +P  F +   
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 268 QYFYLNISGNQIYGGIPKF---------DNPSMPLITTPSDLLG-PIFDLSNNALSGSIF 317
                  S          +          N        PS +    I DL ++       
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHS------- 180

Query: 318 HLICQGEN 325
              C  EN
Sbjct: 181 EFKCSSEN 188

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 6/116 (5%)

Query: 1   LSGNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSS 60
           L+       +   L  L  + +LDLS N L          +  L  L V         + 
Sbjct: 5   LAHKDLT--VLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNALENV 58

Query: 61  LGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFS 116
            G+ NL  ++ L L  N               +L   +++   L Q+      +  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%)

Query: 355 RALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVG 414
           R L+L H + T      +  L  +  L+L +N L  + P      ++L  L++ +     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 415 SIPSWIGERFSILKILNLRSNKFHGDFPIQ-LCGLAFLQILDVASNSLSG 463
                       L+ L L +N+      IQ L     L +L++  NSL  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 24/116 (20%)

Query: 522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIP--------------------- 560
           R + ++    +  +   +  L  +  L+LSHN L    P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 561 DNIGVMRSIESLDLSANQL-SGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQS 615
           D +  +  ++ L L  N+L      Q + +   L  LNL  N+L  +     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 21/128 (16%), Positives = 36/128 (28%), Gaps = 9/128 (7%)

Query: 304 IFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNN 363
           +  L++  L+      +C  E     +  L LS N      P        L  L    N 
Sbjct: 2   VLHLAHKDLTV-----LCHLEQLLL-VTHLDLSHNRLRALPPALAALR-CLEVLQASDNA 54

Query: 364 FTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGER 423
                 ++       L L   N +          +   L +L+L  N L           
Sbjct: 55  LENVDGVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERL 112

Query: 424 FSILKILN 431
             +L  ++
Sbjct: 113 AEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 5/108 (4%)

Query: 333 LKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGII 392
           L L+  + +  +       L +  L+L HN      P ++  L  L  L   +N L  + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 393 PTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGD 440
             +       + L L  N L  S           L +LNL+ N    +
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 24/129 (18%), Positives = 41/129 (31%), Gaps = 6/129 (4%)

Query: 305 FDLSNNALSGSIFHLICQGENFSNNIEFLKLSK-NNFSGDIPDCWMNWLRLRALNLGHNN 363
           +D S  AL            +       + L++ ++ +  +     N   L +LNL +N 
Sbjct: 20  YDGSQQALDLKGLRSD---PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNR 76

Query: 364 FTG--SLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIG 421
                 +   +    +L  LNL  N L             LE L L  N L  +      
Sbjct: 77  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136

Query: 422 ERFSILKIL 430
              +I +  
Sbjct: 137 YISAIRERF 145

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 12/157 (7%)

Query: 140 QLRRFKRLNSLDLSNTILDGSIP------FSLGQISNLEYLDLSNNKLNGTVSEIHFVNL 193
                K + + +     L G IP       +L  +   ++L LS N +    S     NL
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENL 72

Query: 194 TKLAFFRANGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTR 253
             L+  R              +     T+ EL   +        ++    L  L +S+ +
Sbjct: 73  RILSLGR------NLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNK 126

Query: 254 ISAKIPRGFWNSIYQYFYLNISGNQIYGGIPKFDNPS 290
           I+         ++ +   L ++GN +Y    + +  S
Sbjct: 127 ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 23/216 (10%)

Query: 367 SLPMSIGT------LSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWI 420
           ++P  I         +  +  NL+   ++  +  +    +S++ +    ++    I S  
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSD----IKSVQ 62

Query: 421 G-ERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITD 479
           G +    +  L L  NK     P+          LD        ++       S     +
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 480 SYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEV 539
                  L    + E         + +         S L  + ++ +  N  S  +P+  
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDIT------VLSRLTKLDTLSLEDNQISDIVPLA- 175

Query: 540 TNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLS 575
             L  LQ+L LS N ++      +  +++++ L+L 
Sbjct: 176 -GLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 350 NWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE 409
           N +R R L+L        +     TL    +++  +N +  +          L+ L +  
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNN 72

Query: 410 NELVGSIPSW 419
           N +       
Sbjct: 73  NRICRIGEGL 82

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 15/190 (7%)

Query: 16  NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSL-GLENLTSIKRLYL 74
            L       L    +  TV    + ++ +  L          + S+ G+E L ++ ++  
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQINF 69

Query: 75  SENDELG----GKIPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGS 130
           S N          +      L      +      +      L +F+  + +      L +
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 131 SQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFS----LGQISNLEYLDLSNNKLNGTVS 186
                  +N +     L+ L     +   S   +    L  ++ LE LD+S+NK++    
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 189

Query: 187 EIHFVNLTKL 196
                NL  L
Sbjct: 190 LAKLTNLESL 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	743
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.98
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.41
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.86

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.98  E-value=4e-32  Score=277.91  Aligned_cols=259  Identities=32%  Similarity=0.553  Sum_probs=238.7

Q ss_pred             CCccEEECcCCcCcc--cCCccccCCCCCCEEECCC-CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCE
Q 041683          328 NNIEFLKLSKNNFSG--DIPDCWMNWLRLRALNLGH-NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEV  404 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~  404 (743)
                      .+++.|+|++|.+.+  .+|..+..+++|++|+|++ |.+++.+|..|.++++|++|++++|++.+..+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            469999999999987  4789999999999999996 8899899999999999999999999999999999999999999


Q ss_pred             EeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCc-cEEEccCCccccccCccccccccccccCccch
Q 041683          405 LDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFL-QILDVASNSLSGTIPRCINNLSAMAITDSYDQ  483 (743)
Q Consensus       405 L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  483 (743)
                      +++++|.+.+.+|..+. .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+..         
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~---------  199 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC---------
T ss_pred             cccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc---------
Confidence            99999999988888876 79999999999999999999999888876 89999999999988887765543         


Q ss_pred             hhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCC
Q 041683          484 AVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNI  563 (743)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~  563 (743)
                                                            ..++++++...+.+|..+..+++|+.+++++|.+.+.+| .+
T Consensus       200 --------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~  240 (313)
T d1ogqa_         200 --------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KV  240 (313)
T ss_dssp             --------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GC
T ss_pred             --------------------------------------ccccccccccccccccccccccccccccccccccccccc-cc
Confidence                                                  569999999999999999999999999999999997765 58


Q ss_pred             CCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCC-CCCCCCCCCCC
Q 041683          564 GVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGN-DLCGDPLSNCT  635 (743)
Q Consensus       564 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n-~l~~~~~~~c~  635 (743)
                      +.+++|+.|+|++|++++.+|+.+.++++|++|||++|+++|.+|..+.++.++.+++.|| .+||.|++.|+
T Consensus       241 ~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCCCC
Confidence            8899999999999999999999999999999999999999999999888999999999999 69999988884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=9.3e-27  Score=245.58  Aligned_cols=208  Identities=26%  Similarity=0.370  Sum_probs=148.5

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG  408 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  408 (743)
                      .........|...  ....+..+++++.+++++|.+++..|  +..+++|++|++++|.++..  ..+..+++|+.++++
T Consensus       176 ~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  249 (384)
T d2omza2         176 TLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA  249 (384)
T ss_dssp             TCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             ccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccc
Confidence            3444444444433  33456677778888888887775433  45567788888888877743  356777888888888


Q ss_pred             CCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhh
Q 041683          409 ENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILY  488 (743)
Q Consensus       409 ~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  488 (743)
                      +|.+.+ ++. + ..+++|++|++++|++.+..  .+..++.++.+++++|.+.+.  ..+..                 
T Consensus       250 ~n~l~~-~~~-~-~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~-----------------  305 (384)
T d2omza2         250 NNQISN-LAP-L-SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISN-----------------  305 (384)
T ss_dssp             SSCCCC-CGG-G-TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGG-----------------
T ss_pred             cCccCC-CCc-c-cccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccch-----------------
Confidence            888773 433 2 25778888888888877443  366777888888888877632  11222                 


Q ss_pred             ccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCC
Q 041683          489 SSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRS  568 (743)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  568 (743)
                                                   ++.++.|++++|++++..  .+..+++|++|++++|++++ ++ .++.+++
T Consensus       306 -----------------------------~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~  352 (384)
T d2omza2         306 -----------------------------LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTN  352 (384)
T ss_dssp             -----------------------------CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTT
T ss_pred             -----------------------------hcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCC
Confidence                                         333588888888888653  37888999999999999984 44 5888999


Q ss_pred             ccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          569 IESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       569 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                      |++|++++|++++..|  +.++++|+.|+|++|
T Consensus       353 L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9999999999986654  788999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6.5e-26  Score=239.05  Aligned_cols=52  Identities=21%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSAN  577 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  577 (743)
                      ++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       332 ~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         332 QRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            555555555543 22 46667777777777777775443  667777777777776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=4.1e-28  Score=247.88  Aligned_cols=236  Identities=27%  Similarity=0.477  Sum_probs=211.6

Q ss_pred             CCCCCCCccEEECcC-CcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCC
Q 041683          323 GENFSNNIEFLKLSK-NNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSS  401 (743)
Q Consensus       323 ~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~  401 (743)
                      .+..+++|++|+|++ |++.+.+|..|.++++|++|+|++|++.+..+..+..+..|+.+++++|.+.+..|..+..++.
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcc
Confidence            345589999999997 8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEeCCCCcCcccCchhHHhcccC-CcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCc
Q 041683          402 LEVLDLGENELVGSIPSWIGERFSI-LKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDS  480 (743)
Q Consensus       402 L~~L~Ls~n~i~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~  480 (743)
                      |+.+++++|.+.+.+|..+. .+.. ++.+++++|++++..|..+..+..+ .++++++...+.+|..+..++.      
T Consensus       151 L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~------  222 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKN------  222 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSC------
T ss_pred             cceeeccccccccccccccc-cccccccccccccccccccccccccccccc-cccccccccccccccccccccc------
Confidence            99999999999999998887 4555 5899999999999999888877654 7999999999888887776665      


Q ss_pred             cchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCC
Q 041683          481 YDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIP  560 (743)
Q Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  560 (743)
                                                              ++.+++++|.+++.+| .+..+++|+.|+|++|+++|.+|
T Consensus       223 ----------------------------------------l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP  261 (313)
T d1ogqa_         223 ----------------------------------------TQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLP  261 (313)
T ss_dssp             ----------------------------------------CSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCC
T ss_pred             ----------------------------------------cccccccccccccccc-ccccccccccccCccCeecccCC
Confidence                                                    4899999999997655 68889999999999999999999


Q ss_pred             CCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCc-cccc-CC
Q 041683          561 DNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNN-LVGK-IP  608 (743)
Q Consensus       561 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~~~-~p  608 (743)
                      +.|+++++|++|+|++|+++|.+|+ +..+++|+.+++++|+ +.|. +|
T Consensus       262 ~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             hHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            9999999999999999999999996 6789999999999998 4553 44

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-25  Score=221.29  Aligned_cols=228  Identities=22%  Similarity=0.218  Sum_probs=153.6

Q ss_pred             EECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCC-Cc
Q 041683          333 LKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGE-NE  411 (743)
Q Consensus       333 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~-n~  411 (743)
                      ++.++++++ .+|..+.  +++++|+|++|+|++..+.+|.++++|++|++++|.+..+.+..+..++.++.++... +.
T Consensus        16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            444555555 3333222  3566666666666655555666666666666666666666666666666666665543 33


Q ss_pred             CcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccc
Q 041683          412 LVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSL  491 (743)
Q Consensus       412 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  491 (743)
                      +. .++...+.++++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..++.                 
T Consensus        93 ~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~-----------------  154 (284)
T d1ozna_          93 LR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-----------------  154 (284)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------------
T ss_pred             cc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccc-----------------
Confidence            33 444444445666666666666666555556666667777777777776555555554444                 


Q ss_pred             cCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccE
Q 041683          492 RSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIES  571 (743)
Q Consensus       492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  571 (743)
                                                   |+.|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++
T Consensus       155 -----------------------------L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         155 -----------------------------LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             -----------------------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             -----------------------------hhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence                                         367777777777777777888888888888888888878888888888888


Q ss_pred             EECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCC
Q 041683          572 LDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSS  610 (743)
Q Consensus       572 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~  610 (743)
                      |++++|++.+..|..|..+++|++|++++|++.|.++..
T Consensus       206 L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            888888888777778888888888888888888876643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8.2e-25  Score=219.57  Aligned_cols=251  Identities=20%  Similarity=0.207  Sum_probs=211.2

Q ss_pred             CCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEcc-CccccccCCcccCCCCCCCEEe
Q 041683          328 NNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLR-NNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       328 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      +++++|+|++|+|+++.+..|.++++|++|++++|.+....+..+..+..++.+... .+.++.+.+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            578999999999998888899999999999999999998888889999999998865 5677777788999999999999


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI  486 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  486 (743)
                      +++|.+. .++...+...++|+.+++++|.++++.+..|..+++|+.|++++|++.+..+..|.+++.|           
T Consensus       112 l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L-----------  179 (284)
T d1ozna_         112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL-----------  179 (284)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC-----------
T ss_pred             cCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcccccc-----------
Confidence            9999997 5555555568899999999999998778889999999999999999998778788777664           


Q ss_pred             hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCC
Q 041683          487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM  566 (743)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  566 (743)
                                                         +.+++++|++++..|..|.++++|++|++++|++.+..|..|+.+
T Consensus       180 -----------------------------------~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~  224 (284)
T d1ozna_         180 -----------------------------------DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL  224 (284)
T ss_dssp             -----------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred             -----------------------------------chhhhhhccccccChhHhhhhhhcccccccccccccccccccccc
Confidence                                               899999999999999999999999999999999998888899999


Q ss_pred             CCccEEECcCCcCCCCCCccccCcCCCCeeeCcCCcccccCCCCcccCCCCCccccCCCCCC
Q 041683          567 RSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNNNLVGKIPSSTQLQSFGASSFAGNDLCG  628 (743)
Q Consensus       567 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~l~~~~~~~n~l~~  628 (743)
                      ++|+.|++++|++...-+. ..-...++.+....+.+.|..|...  .......+..++++|
T Consensus       225 ~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~~l--~g~~l~~l~~~~l~g  283 (284)
T d1ozna_         225 RALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL--AGRDLKRLAANDLQG  283 (284)
T ss_dssp             TTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGG--TTCBGGGSCGGGSCC
T ss_pred             cccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCchHH--cCCccccCCHHHCCC
Confidence            9999999999999865331 1122456677888889998877642  222333344455554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=9.4e-24  Score=214.37  Aligned_cols=227  Identities=20%  Similarity=0.276  Sum_probs=127.5

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      ++++|+|++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|++++|+++ .++..   ...       
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~---~~~-------  100 (305)
T d1xkua_          32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEK---MPK-------  100 (305)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS---CCT-------
T ss_pred             CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccc---hhh-------
Confidence            4555555555554444444555555555555555555444555555555555555555554 33321   112       


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccc-cChhhhhhcccCceEecccCccc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAK-IPRGFWNSIYQYFYLNISGNQIY  280 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~n~l~  280 (743)
                                       .++.|.+.+|.+....+..+.....+..++...|..... .....+..+++|+.+++++|.+.
T Consensus       101 -----------------~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_         101 -----------------TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             -----------------TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             -----------------hhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence                             344444444444444444555566666666666543221 11223344555666666655543


Q ss_pred             cCCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECC
Q 041683          281 GGIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLG  360 (743)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  360 (743)
                      . +|.                                       ..+++|++|++++|......+..|..++.++.|+++
T Consensus       164 ~-l~~---------------------------------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s  203 (305)
T d1xkua_         164 T-IPQ---------------------------------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  203 (305)
T ss_dssp             S-CCS---------------------------------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             c-cCc---------------------------------------ccCCccCEEECCCCcCCCCChhHhhccccccccccc
Confidence            1 110                                       013467777777777766666667777777777777


Q ss_pred             CCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCch
Q 041683          361 HNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS  418 (743)
Q Consensus       361 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~  418 (743)
                      +|.+.+..+..+.++++|++|+|++|.++. +|.+|..+++|++|++++|+|+ .++.
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~-~i~~  259 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS-AIGS  259 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             cccccccccccccccccceeeecccccccc-cccccccccCCCEEECCCCccC-ccCh
Confidence            777776666667777777777777777763 3556667777777777777766 4443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=6.1e-23  Score=208.28  Aligned_cols=63  Identities=27%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             cCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccc
Q 041683          396 FKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLS  462 (743)
Q Consensus       396 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  462 (743)
                      +..+++|+.+++++|.+. .+|..   .+++|+.|++++|...+..+..|.+++.++.|++++|.+.
T Consensus       146 ~~~l~~L~~l~l~~n~l~-~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~  208 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS  208 (305)
T ss_dssp             GGGCTTCCEEECCSSCCC-SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccCccccccCCcc-ccCcc---cCCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence            333344444444444443 33322   1344555555555555555555555555555555555554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.1e-23  Score=205.46  Aligned_cols=203  Identities=22%  Similarity=0.283  Sum_probs=140.0

Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEE
Q 041683          352 LRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILN  431 (743)
Q Consensus       352 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~  431 (743)
                      ..+.+++.+++.++ .+|..+.  +++++|+|++|.|+++.+.+|.++++|++|+|++|+++ .++..  ..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--cccccccccc
Confidence            34444555555555 2343332  34555666666555555555556666666666666655 44432  2456666666


Q ss_pred             ccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeecee
Q 041683          432 LRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVL  511 (743)
Q Consensus       432 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  511 (743)
                      +++|++.. .+..+..+++|+.|++++|.+.+..+..+..+..                                     
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------------------------  125 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-------------------------------------  125 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-------------------------------------
T ss_pred             cccccccc-cccccccccccccccccccccceeeccccccccc-------------------------------------
Confidence            66666653 3445666777777777777766544444444333                                     


Q ss_pred             eehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcC
Q 041683          512 VEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLS  591 (743)
Q Consensus       512 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  591 (743)
                               +++|++++|.++...+..+..++.|+.|++++|++++..++.|..+++|++|+|++|+|+ .+|+.+..++
T Consensus       126 ---------l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~  195 (266)
T d1p9ag_         126 ---------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (266)
T ss_dssp             ---------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ---------cccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCC
Confidence                     477777888777677777888999999999999999888888999999999999999999 7888888899


Q ss_pred             CCCeeeCcCCcccccCC
Q 041683          592 FLNHLNLSNNNLVGKIP  608 (743)
Q Consensus       592 ~L~~L~ls~N~l~~~~p  608 (743)
                      +|+.|+|++|++.|.+.
T Consensus       196 ~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         196 LLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCSEEECCSCCBCCSGG
T ss_pred             CCCEEEecCCCCCCCcc
Confidence            99999999999988643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.1e-22  Score=194.73  Aligned_cols=201  Identities=21%  Similarity=0.177  Sum_probs=168.6

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      ...+.+++.++++++. +|..+.  +++++|+|++|++++..+.+|.++++|++|+|++|.++.+.  .+..+++|++|+
T Consensus         9 ~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~   83 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLD   83 (266)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEE
T ss_pred             cCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccccc
Confidence            3456777888888884 565443  57899999999998777778889999999999999988543  467889999999


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI  486 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  486 (743)
                      +++|++. ..+..+. .+++|++|++++|.+.+..+..+..+.+++.|++++|.+....+..+..++.            
T Consensus        84 Ls~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~------------  149 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK------------  149 (266)
T ss_dssp             CCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT------------
T ss_pred             ccccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceecccccccccc------------
Confidence            9999987 4555443 6889999999999998877888889999999999999998666666665555            


Q ss_pred             hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCC
Q 041683          487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM  566 (743)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  566 (743)
                                                        ++.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+
T Consensus       150 ----------------------------------l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~  194 (266)
T d1p9ag_         150 ----------------------------------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (266)
T ss_dssp             ----------------------------------CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             ----------------------------------chhcccccccccccCccccccccccceeecccCCCc-ccChhHCCC
Confidence                                              489999999999888888999999999999999999 888888899


Q ss_pred             CCccEEECcCCcCCC
Q 041683          567 RSIESLDLSANQLSG  581 (743)
Q Consensus       567 ~~L~~L~Ls~N~l~~  581 (743)
                      ++|+.|+|++|++..
T Consensus       195 ~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         195 HLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CCCSEEECCSCCBCC
T ss_pred             CCCCEEEecCCCCCC
Confidence            999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=3.8e-17  Score=168.83  Aligned_cols=219  Identities=24%  Similarity=0.293  Sum_probs=111.7

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      ++++|+|+++.++. +|+.   .++|++|++++|.|+ .+|..   ..+|++|++++|+++ .++.  +  .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS--C--CTTCCEEEC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh--h--ccccccccc
Confidence            56677777776643 4432   356677777777766 44543   345666677766665 3332  1  123555555


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcccc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      ++|.+..                         +|. +..+++|+.|+++++.+.. .+..    ...+..+.+..+....
T Consensus       106 ~~n~l~~-------------------------lp~-~~~l~~L~~L~l~~~~~~~-~~~~----~~~l~~l~~~~~~~~~  154 (353)
T d1jl5a_         106 SNNQLEK-------------------------LPE-LQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE  154 (353)
T ss_dssp             CSSCCSS-------------------------CCC-CTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS
T ss_pred             ccccccc-------------------------ccc-hhhhccceeeccccccccc-cccc----cccccchhhccccccc
Confidence            5554432                         222 3445555555555555542 2111    2334444444333221


Q ss_pred             CCCCCCCCCCCcccCCCCCCCCeEEecCCccccccchhhccCCCCCCCccEEECcCCcCcccCCccccCCCCCCEEECCC
Q 041683          282 GIPKFDNPSMPLITTPSDLLGPIFDLSNNALSGSIFHLICQGENFSNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGH  361 (743)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~l~~~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  361 (743)
                      .                                       ..+..++.++.+++++|..... +.   .....+.+...+
T Consensus       155 ~---------------------------------------~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~  191 (353)
T d1jl5a_         155 L---------------------------------------PELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGN  191 (353)
T ss_dssp             C---------------------------------------CCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCS
T ss_pred             c---------------------------------------ccccccccceeccccccccccc-cc---cccccccccccc
Confidence            0                                       1122245667777777766532 21   122345566665


Q ss_pred             CcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCchhHHhcccCCcEEEccCCcCc
Q 041683          362 NNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPSWIGERFSILKILNLRSNKFH  438 (743)
Q Consensus       362 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~  438 (743)
                      +.+. ..+ .+..++.|+.+++++|..... +   ....++..+.+.++.+. ..+.    ....+...++..+.+.
T Consensus       192 ~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~  257 (353)
T d1jl5a_         192 NILE-ELP-ELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFS  257 (353)
T ss_dssp             SCCS-SCC-CCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS
T ss_pred             cccc-ccc-ccccccccccccccccccccc-c---ccccccccccccccccc-cccc----cccccccccccccccc
Confidence            5554 232 345677777777777765532 2   23455667777777665 2222    2344555555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=1.3e-16  Score=164.87  Aligned_cols=138  Identities=25%  Similarity=0.266  Sum_probs=69.3

Q ss_pred             CccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEccCCCCccccChhhhcCCCCCCEEEC
Q 041683          122 ELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDLSNNKLNGTVSEIHFVNLTKLAFFRA  201 (743)
Q Consensus       122 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l  201 (743)
                      .|++|++++|.+.. +|. ++.+++|++|+++++.+... +.   ....+..+.+.++... ...  .+..++.++.+++
T Consensus        99 ~L~~L~L~~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~-~~~--~l~~l~~l~~L~l  169 (353)
T d1jl5a_          99 LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE-ELP--ELQNLPFLTAIYA  169 (353)
T ss_dssp             TCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCC--CCTTCTTCCEEEC
T ss_pred             cccccccccccccc-ccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccc-ccc--cccccccceeccc
Confidence            46666666666643 332 45666777777776666532 21   2345566666555543 211  3555666666666


Q ss_pred             CCCcceeecCCCCCCCccccEEEcCCCcCCCCcchhhcCCCCCCEEEccCCCCccccChhhhhhcccCceEecccCcc
Q 041683          202 NGNSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQSQRELNDLDISSTRISAKIPRGFWNSIYQYFYLNISGNQI  279 (743)
Q Consensus       202 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l  279 (743)
                      ++|.......    .....+.+...++.+. ..+ .+..++.|+.+++++|.... .+..    ..++..+.+.++.+
T Consensus       170 ~~n~~~~~~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~~----~~~l~~~~~~~~~~  236 (353)
T d1jl5a_         170 DNNSLKKLPD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYL  236 (353)
T ss_dssp             CSSCCSSCCC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCC
T ss_pred             cccccccccc----cccccccccccccccc-ccc-cccccccccccccccccccc-cccc----cccccccccccccc
Confidence            6665432211    1112334444444332 122 24456666777776665542 2221    23455555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-20  Score=201.09  Aligned_cols=63  Identities=19%  Similarity=0.115  Sum_probs=34.6

Q ss_pred             ccEEEccCCcCccc----CchhhcccCCCCEEeCCCCcCcccCCCC----CC-CCCCccEEECcCCcCCCCC
Q 041683          521 VRSIDVSKNIFSGE----IPVEVTNLQGLQSLNLSHNLLTGRIPDN----IG-VMRSIESLDLSANQLSGQI  583 (743)
Q Consensus       521 L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~-~l~~L~~L~Ls~N~l~~~~  583 (743)
                      |++|+|++|.++..    ++..+..+++|++|+|++|+++......    +. +...|+.|++++|.+....
T Consensus       371 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~  442 (460)
T d1z7xw1         371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  442 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             CCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHH
Confidence            45556666555432    3344555667777777777765422211    11 2235777777777776443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.2e-20  Score=203.25  Aligned_cols=238  Identities=19%  Similarity=0.107  Sum_probs=146.4

Q ss_pred             CCCccEEECcCCcCcccC----Cccc-cCCCCCCEEECCCCcCccc----CCccccCCCCCcEEEccCccccc-----cC
Q 041683          327 SNNIEFLKLSKNNFSGDI----PDCW-MNWLRLRALNLGHNNFTGS----LPMSIGTLSSLLSLNLRNNILSG-----II  392 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~----~~~~-~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~-----~~  392 (743)
                      ...++.++++++......    ...+ ........+++..+.+...    ....+...+.++.+++.+|.+..     ..
T Consensus       168 ~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~  247 (460)
T d1z7xw1         168 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELC  247 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhh
Confidence            345677777766554211    0111 1223456777777765421    11223456778888888876542     22


Q ss_pred             CcccCCCCCCCEEeCCCCcCcccCchhH---HhcccCCcEEEccCCcCcccCCcc-----ccCCCCccEEEccCCccccc
Q 041683          393 PTSFKNFSSLEVLDLGENELVGSIPSWI---GERFSILKILNLRSNKFHGDFPIQ-----LCGLAFLQILDVASNSLSGT  464 (743)
Q Consensus       393 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~  464 (743)
                      .........++.+++++|.+........   ....+.++.+++++|.+.......     ......|+.+++++|.+...
T Consensus       248 ~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~  327 (460)
T d1z7xw1         248 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  327 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhh
Confidence            3344556788888888888763322111   124678888888888876322111     12345788999999887643


Q ss_pred             cCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCccc----Cchhhc
Q 041683          465 IPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGE----IPVEVT  540 (743)
Q Consensus       465 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~  540 (743)
                      ....+.++.                                          ...+.|++|||++|++++.    ++..+.
T Consensus       328 ~~~~l~~~~------------------------------------------~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  365 (460)
T d1z7xw1         328 CCSHFSSVL------------------------------------------AQNRFLLELQISNNRLEDAGVRELCQGLG  365 (460)
T ss_dssp             GHHHHHHHH------------------------------------------HHCSSCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             hhhhccccc------------------------------------------ccccchhhhheeeecccCcccchhhhhhh
Confidence            322222111                                          1234579999999998753    233333


Q ss_pred             -ccCCCCEEeCCCCcCccc----CCCCCCCCCCccEEECcCCcCCCCCCcc----cc-CcCCCCeeeCcCCccccc
Q 041683          541 -NLQGLQSLNLSHNLLTGR----IPDNIGVMRSIESLDLSANQLSGQIPQS----MS-NLSFLNHLNLSNNNLVGK  606 (743)
Q Consensus       541 -~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----l~-~l~~L~~L~ls~N~l~~~  606 (743)
                       ..+.|++|+|++|.++..    +++.+...++|++|++++|+|+......    +. ....|+.|++.+|.+...
T Consensus       366 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             cccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence             457799999999999742    4455666789999999999997543322    22 334799999999988754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-18  Score=169.32  Aligned_cols=213  Identities=15%  Similarity=0.086  Sum_probs=154.4

Q ss_pred             CCcCCCCCCCCCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCc
Q 041683            3 GNQFQGQIPSRLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGG   82 (743)
Q Consensus         3 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~   82 (743)
                      +.+++ .+|..+.  +++++|+|++|+|+.+.+.+|.++++|++|++++|.+...++..+|.+++.++++++..++.+..
T Consensus        17 ~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~   93 (242)
T d1xwdc1          17 ESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY   93 (242)
T ss_dssp             SCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE
T ss_pred             CCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc
Confidence            44566 5665553  58999999999998888888999999999999999988667776889999999999876677777


Q ss_pred             ccchhccCCCCCCEEEccCCcCcccch-hhhhcccccccCCccEEEccCCcCcccchhhccCCC-CCCEEECcCccCccc
Q 041683           83 KIPTSFGKLCKLTSFSMRFTKLSQDIS-EILGIFSACVANELESLRLGSSQIFGHLTNQLRRFK-RLNSLDLSNTILDGS  160 (743)
Q Consensus        83 ~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~Ls~n~l~~~  160 (743)
                      ..+..|.++++|+++++++|.+....+ ..+..+.     .+..+...++.+....+..|..++ .++.|++++|.++..
T Consensus        94 ~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~-----~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i  168 (242)
T d1xwdc1          94 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-----KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  168 (242)
T ss_dssp             ECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSS-----CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             cccccccccccccccccchhhhccccccccccccc-----ccccccccccccccccccccccccccceeeeccccccccc
Confidence            778889999999999999998765322 1222222     566666677777666666666654 788888888888855


Q ss_pred             cchhccCCCCCCEE-EccCCCCccccChhhhcCCCCCCEEECCCCcceeecCCCCCCCccccEEEc
Q 041683          161 IPFSLGQISNLEYL-DLSNNKLNGTVSEIHFVNLTKLAFFRANGNSLIFKINPNWVPPFQLTVLEL  225 (743)
Q Consensus       161 ~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l  225 (743)
                      .+..| ...+++++ ++++|+++ .++...|.++++|++|++++|+++...+..|..+.+|+.+++
T Consensus       169 ~~~~~-~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         169 HNCAF-NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CTTTT-TTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccc-cchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            44444 34454444 56777776 666656788888888888888877554445555555555444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.9e-18  Score=166.99  Aligned_cols=202  Identities=16%  Similarity=0.106  Sum_probs=105.6

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccC-ccccccCCcccCCCCCCCEEe
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS-LPMSIGTLSSLLSLNLRN-NILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      ++++|++++|.+..+.+..|.++++|++|++++|.+... .+.+|.+++.++++.+.. |.+....+..|.++++|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            455566666655544444555555566666655555432 233455555555555443 344444455555555555555


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI  486 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  486 (743)
                      +++|.+. ..+...                       .+..++.+..+..+++.+....+..|..++.            
T Consensus       110 l~~~~l~-~~~~~~-----------------------~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~------------  153 (242)
T d1xwdc1         110 ISNTGIK-HLPDVH-----------------------KIHSLQKVLLDIQDNINIHTIERNSFVGLSF------------  153 (242)
T ss_dssp             EESCCCC-SCCCCT-----------------------TTCBSSCEEEEEESCTTCCEECTTSSTTSBS------------
T ss_pred             cchhhhc-cccccc-----------------------ccccccccccccccccccccccccccccccc------------
Confidence            5555554 222111                       1222333333344444444333333322221            


Q ss_pred             hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEE-eCCCCcCcccCCCCCCC
Q 041683          487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSL-NLSHNLLTGRIPDNIGV  565 (743)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~  565 (743)
                                                       .++.|++++|+++...+..+. .++++++ ++++|+++...+..|.+
T Consensus       154 ---------------------------------~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~  199 (242)
T d1xwdc1         154 ---------------------------------ESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHG  199 (242)
T ss_dssp             ---------------------------------SCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTT
T ss_pred             ---------------------------------cceeeeccccccccccccccc-chhhhccccccccccccccHHHhcC
Confidence                                             135566666666644443333 3444443 45667777444455777


Q ss_pred             CCCccEEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          566 MRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       566 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      +++|++|++++|+++...+..|.++++|+.+++.+
T Consensus       200 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         200 ASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            78888888888888755555677777777666644

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=6.7e-18  Score=162.36  Aligned_cols=205  Identities=23%  Similarity=0.363  Sum_probs=136.5

Q ss_pred             cEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683          331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN  410 (743)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n  410 (743)
                      ..++++.+++.+..  .+..+.+|++|++.+|.++. + +.+..+++|++|++++|.+++..+  +..+++|+.+++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            33455555555432  34556677777777777764 3 346777777777777777765433  677777777777777


Q ss_pred             cCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhcc
Q 041683          411 ELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSS  490 (743)
Q Consensus       411 ~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~  490 (743)
                      .++ .++. +. .+++|+.++++++...+.  ..+...+.++.+.++++.+....+  +..                   
T Consensus        96 ~~~-~i~~-l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~--~~~-------------------  149 (227)
T d1h6ua2          96 PLK-NVSA-IA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP--LAG-------------------  149 (227)
T ss_dssp             CCS-CCGG-GT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--GGG-------------------
T ss_pred             ccc-cccc-cc-cccccccccccccccccc--chhccccchhhhhchhhhhchhhh--hcc-------------------
Confidence            776 4543 22 577777777777766533  235566777777777776653221  222                   


Q ss_pred             ccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCcc
Q 041683          491 LRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIE  570 (743)
Q Consensus       491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  570 (743)
                                                 .+.|+.|++++|.+++..  .+.++++|++|+|++|++++ ++. ++.+++|+
T Consensus       150 ---------------------------~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~  198 (227)
T d1h6ua2         150 ---------------------------LTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLI  198 (227)
T ss_dssp             ---------------------------CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred             ---------------------------ccccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCC
Confidence                                       233577788888776433  37788888888888888874 433 77888889


Q ss_pred             EEECcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          571 SLDLSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       571 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      +|++++|++++..|  ++++++|+.|++++
T Consensus       199 ~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         199 EVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             EEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            99999888885432  77888888888863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.8e-17  Score=155.67  Aligned_cols=187  Identities=21%  Similarity=0.315  Sum_probs=153.3

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      +.+|+.|++.+|+++..  ..+..+++|++|++++|.+++..+  +..+++|+++++++|.++.+  ..+..+++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--ccccccccccccc
Confidence            46899999999999854  358899999999999999986543  88999999999999998854  4688999999999


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhh
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVI  486 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  486 (743)
                      ++++...+ ++..  ...+.++.+.++++.+....  .+..+++|+.|++++|.+.+..+  +.+++             
T Consensus       114 l~~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~--l~~l~-------------  173 (227)
T d1h6ua2         114 LTSTQITD-VTPL--AGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTP--LANLS-------------  173 (227)
T ss_dssp             CTTSCCCC-CGGG--TTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGG--GTTCT-------------
T ss_pred             cccccccc-cchh--ccccchhhhhchhhhhchhh--hhccccccccccccccccccchh--hcccc-------------
Confidence            99999873 3332  25788999999999987443  47788999999999998864322  44433             


Q ss_pred             hhccccCCCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCC
Q 041683          487 LYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVM  566 (743)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  566 (743)
                                                       .|++|++++|++++. + .+.++++|++|+|++|++++ ++ .++++
T Consensus       174 ---------------------------------~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l  216 (227)
T d1h6ua2         174 ---------------------------------KLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD-VS-PLANT  216 (227)
T ss_dssp             ---------------------------------TCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB-CG-GGTTC
T ss_pred             ---------------------------------cceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC-Cc-ccccC
Confidence                                             469999999999864 3 38899999999999999995 44 38899


Q ss_pred             CCccEEECcC
Q 041683          567 RSIESLDLSA  576 (743)
Q Consensus       567 ~~L~~L~Ls~  576 (743)
                      ++|+.|++++
T Consensus       217 ~~L~~L~lsn  226 (227)
T d1h6ua2         217 SNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEEeeC
Confidence            9999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=7.8e-18  Score=156.94  Aligned_cols=101  Identities=17%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                      ++|++++|++++..+..|.++++|++|+|++|+|++..|++|..+++|++|+|++|.+....+.. .-...++.+.+..|
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~  159 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGG  159 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGG
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCC
Confidence            55555566555555556666677777777777776666666666777777777777666432211 11233555566666


Q ss_pred             cccccCCCCcccCCCCCccccCCC
Q 041683          602 NLVGKIPSSTQLQSFGASSFAGND  625 (743)
Q Consensus       602 ~l~~~~p~~~~~~~l~~~~~~~n~  625 (743)
                      .+++..|..  +......++..|.
T Consensus       160 ~~~c~~p~~--l~~~~l~~L~~n~  181 (192)
T d1w8aa_         160 AARCGAPSK--VRDVQIKDLPHSE  181 (192)
T ss_dssp             GCBBCSSTT--TTTSBGGGSCTTT
T ss_pred             CeEeCCChh--hcCCEeeecCHhh
Confidence            666666542  3333444455453

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=7.6e-17  Score=152.42  Aligned_cols=165  Identities=24%  Similarity=0.379  Sum_probs=95.5

Q ss_pred             CCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCC
Q 041683           16 NLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLT   95 (743)
Q Consensus        16 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~   95 (743)
                      .+.+|++|++++|.+....  .+..+++|++|++++|.++ .++.  ++.+++|++|+++ ++.+++ ++ .+.++++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~-~n~i~~-l~-~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLD-ENKVKD-LS-SLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCC-GG-GGTTCTTCC
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCcccc-Cccc--cccCccccccccc-cccccc-cc-ccccccccc
Confidence            3556666777766665442  2566666777777777666 3442  5566667777776 445543 22 466666666


Q ss_pred             EEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEE
Q 041683           96 SFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLD  175 (743)
Q Consensus        96 ~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  175 (743)
                      .|++++|.+..  ...+..++     +++.+++++|.+...  ..+..+++|+++++++|.+++. + .++++++|++|+
T Consensus       116 ~L~l~~~~~~~--~~~l~~l~-----~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~  184 (210)
T d1h6ta2         116 SLSLEHNGISD--INGLVHLP-----QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLY  184 (210)
T ss_dssp             EEECTTSCCCC--CGGGGGCT-----TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEE
T ss_pred             ccccccccccc--cccccccc-----ccccccccccccccc--cccccccccccccccccccccc-c-cccCCCCCCEEE
Confidence            66666665543  12333444     566666666665432  2355566666666666666543 2 255666666666


Q ss_pred             ccCCCCccccChhhhcCCCCCCEEECC
Q 041683          176 LSNNKLNGTVSEIHFVNLTKLAFFRAN  202 (743)
Q Consensus       176 L~~n~l~~~~~~~~~~~l~~L~~L~l~  202 (743)
                      +++|+++ .++  .+.++++|++|+++
T Consensus       185 Ls~N~i~-~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         185 LSKNHIS-DLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCC-BCG--GGTTCTTCSEEEEE
T ss_pred             CCCCCCC-CCh--hhcCCCCCCEEEcc
Confidence            6666665 343  25666666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.6e-16  Score=148.89  Aligned_cols=163  Identities=23%  Similarity=0.391  Sum_probs=92.7

Q ss_pred             CCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCC
Q 041683           15 GNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKL   94 (743)
Q Consensus        15 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L   94 (743)
                      ..++++++|++++|++..+  +.++.+++|++|++++|+++ .++.  ++++++|++|+++ ++.+.. ++ .+.++++|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~-~n~~~~-~~-~l~~l~~L  108 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMN-NNQIAD-IT-PLANLTNL  108 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC-SSCCCC-CG-GGTTCTTC
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc--ccCCccccccccc-cccccc-cc-cccccccc
Confidence            3456666777777666543  23566667777777777666 3332  6666667777776 333332 22 35666666


Q ss_pred             CEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEE
Q 041683           95 TSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYL  174 (743)
Q Consensus        95 ~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  174 (743)
                      +.|+++++.....  ..+..++     +|+.|++++|++.. + ..+..+++|++|++++|.+++.  ..++++++|++|
T Consensus       109 ~~L~l~~~~~~~~--~~~~~l~-----~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L  177 (199)
T d2omxa2         109 TGLTLFNNQITDI--DPLKNLT-----NLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERL  177 (199)
T ss_dssp             SEEECCSSCCCCC--GGGTTCT-----TCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred             ccccccccccccc--cccchhh-----hhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEE
Confidence            6666666655432  2233333     66666666666543 2 2356666666666666666543  235566666666


Q ss_pred             EccCCCCccccChhhhcCCCCCCEE
Q 041683          175 DLSNNKLNGTVSEIHFVNLTKLAFF  199 (743)
Q Consensus       175 ~L~~n~l~~~~~~~~~~~l~~L~~L  199 (743)
                      ++++|+++ .++.  +..+++|++|
T Consensus       178 ~ls~N~i~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVS-DISV--LAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred             ECCCCCCC-CCcc--ccCCCCCCcC
Confidence            66666665 3332  5555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=2.4e-17  Score=153.58  Aligned_cols=85  Identities=24%  Similarity=0.334  Sum_probs=39.6

Q ss_pred             cEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCcCC
Q 041683          522 RSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLSNN  601 (743)
Q Consensus       522 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N  601 (743)
                      +.|++++|.+.+..+..|..+++|++|+|++|+|++..|++|.++++|++|+|++|+|++..|..|..+++|++|+|++|
T Consensus        57 ~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence            33333333333333444444444555555555444444444444445555555555554444444444444555555555


Q ss_pred             ccccc
Q 041683          602 NLVGK  606 (743)
Q Consensus       602 ~l~~~  606 (743)
                      ++.+.
T Consensus       137 ~~~~~  141 (192)
T d1w8aa_         137 PFNCN  141 (192)
T ss_dssp             CBCCS
T ss_pred             ccccc
Confidence            44443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.6e-16  Score=150.13  Aligned_cols=180  Identities=23%  Similarity=0.327  Sum_probs=98.2

Q ss_pred             ECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCc
Q 041683          334 KLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELV  413 (743)
Q Consensus       334 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~  413 (743)
                      .+..+.+.+.++.  ..+.+|++|++++|.++..  ..+..+++|++|++++|+++++.  .+..+++|++|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            4444444433321  2345666666666666532  13555666666666666665432  2455666666666666665


Q ss_pred             ccCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccC
Q 041683          414 GSIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRS  493 (743)
Q Consensus       414 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~  493 (743)
                       .++. + ..+++|+.|++++|.+.. + ..+..+++++.+++++|.+.                               
T Consensus       104 -~l~~-l-~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~-------------------------------  147 (210)
T d1h6ta2         104 -DLSS-L-KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKIT-------------------------------  147 (210)
T ss_dssp             -CGGG-G-TTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-------------------------------
T ss_pred             -cccc-c-cccccccccccccccccc-c-cccccccccccccccccccc-------------------------------
Confidence             3442 2 235555555555555542 1 23444455555555555443                               


Q ss_pred             CCCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEE
Q 041683          494 EGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLD  573 (743)
Q Consensus       494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  573 (743)
                                                             +  +..+..+++|+.+++++|++++ ++ .+.++++|++|+
T Consensus       148 ---------------------------------------~--~~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~  184 (210)
T d1h6ta2         148 ---------------------------------------D--ITVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLY  184 (210)
T ss_dssp             ---------------------------------------C--CGGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred             ---------------------------------------c--cccccccccccccccccccccc-cc-cccCCCCCCEEE
Confidence                                                   2  1234456666777777776663 22 266667777777


Q ss_pred             CcCCcCCCCCCccccCcCCCCeeeCcC
Q 041683          574 LSANQLSGQIPQSMSNLSFLNHLNLSN  600 (743)
Q Consensus       574 Ls~N~l~~~~p~~l~~l~~L~~L~ls~  600 (743)
                      +++|+++. +| .+.++++|++|+|++
T Consensus       185 Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         185 LSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            77777663 33 366677777777653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.6e-15  Score=141.97  Aligned_cols=169  Identities=23%  Similarity=0.362  Sum_probs=115.4

Q ss_pred             CCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCE
Q 041683           17 LTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS   96 (743)
Q Consensus        17 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~   96 (743)
                      +++...+.++.+.+++...  ...++++++|++++|.++ .++  .++.+++|++|+++ +|.+++..+  ++++++|++
T Consensus        17 l~~~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~--~l~~l~nL~~L~Ls-~N~l~~~~~--l~~l~~L~~   88 (199)
T d2omxa2          17 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID--GVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVD   88 (199)
T ss_dssp             HHHHHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCE
T ss_pred             HHHHHHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Ccc--ccccCCCcCcCccc-cccccCccc--ccCCccccc
Confidence            3344455677777766433  346788999999999987 565  47888999999998 567765433  788888888


Q ss_pred             EEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccchhhccCCCCCCEEECcCccCccccchhccCCCCCCEEEc
Q 041683           97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLTNQLRRFKRLNSLDLSNTILDGSIPFSLGQISNLEYLDL  176 (743)
Q Consensus        97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  176 (743)
                      |++++|.+... + .+..+.     .|+.|++++|.+...  ..+..+++|+.|++++|.+.. + ..+..+++|++|++
T Consensus        89 L~l~~n~~~~~-~-~l~~l~-----~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l  157 (199)
T d2omxa2          89 ILMNNNQIADI-T-PLANLT-----NLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNF  157 (199)
T ss_dssp             EECCSSCCCCC-G-GGTTCT-----TCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred             ccccccccccc-c-cccccc-----ccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-cccccccccccccc
Confidence            88888876542 2 244444     777777777776543  236677777777777777763 2 35667777777777


Q ss_pred             cCCCCccccChhhhcCCCCCCEEECCCCcce
Q 041683          177 SNNKLNGTVSEIHFVNLTKLAFFRANGNSLI  207 (743)
Q Consensus       177 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  207 (743)
                      ++|+++ .++.  +.++++|++|++++|+++
T Consensus       158 ~~n~l~-~l~~--l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         158 SSNQVT-DLKP--LANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CSSCCC-CCGG--GTTCTTCCEEECCSSCCC
T ss_pred             cccccc-CCcc--ccCCCCCCEEECCCCCCC
Confidence            777776 3332  666666666666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-15  Score=149.56  Aligned_cols=227  Identities=17%  Similarity=0.162  Sum_probs=138.0

Q ss_pred             ccEEECcCCcCcccCCccccCCCCCCEEECCCCcCccc-CCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCC
Q 041683          330 IEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGS-LPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLG  408 (743)
Q Consensus       330 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls  408 (743)
                      +..+.++...+..... ......+|++||++++.++.. +...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            4566666655543222 233456789999998887643 34456778899999999998877777778888899999998


Q ss_pred             CC-cCcccCchhHHhcccCCcEEEccCCc-Cccc-CCcccc-CCCCccEEEccCCc--cccccCccccccccccccCccc
Q 041683          409 EN-ELVGSIPSWIGERFSILKILNLRSNK-FHGD-FPIQLC-GLAFLQILDVASNS--LSGTIPRCINNLSAMAITDSYD  482 (743)
Q Consensus       409 ~n-~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~-~l~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~~~~~~  482 (743)
                      +| .+++..-..+...+++|++|++++|. ++.. ....+. ..++|+.|+++++.  ++..   .+..           
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~---~l~~-----------  169 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS---DLST-----------  169 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH---HHHH-----------
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccc---cccc-----------
Confidence            86 45432222344568889999998864 3321 111222 24678888887653  2210   0000           


Q ss_pred             hhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCC-cCcccCchhhcccCCCCEEeCCCC-cCcccCC
Q 041683          483 QAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKN-IFSGEIPVEVTNLQGLQSLNLSHN-LLTGRIP  560 (743)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p  560 (743)
                                                     ....+++|++|++++| .+++.....+.++++|++|+|++| .+++...
T Consensus       170 -------------------------------l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         170 -------------------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             -------------------------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG
T ss_pred             -------------------------------cccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHH
Confidence                                           0112445677777775 466666666777777888888774 4665555


Q ss_pred             CCCCCCCCccEEECcCCcCCCCCCccccCc-CCCCeeeCcCCccccc
Q 041683          561 DNIGVMRSIESLDLSANQLSGQIPQSMSNL-SFLNHLNLSNNNLVGK  606 (743)
Q Consensus       561 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~  606 (743)
                      ..++.+++|+.|+++++ ++.   ..+..+ ..+..|++..++++..
T Consensus       219 ~~L~~~~~L~~L~l~~~-~~d---~~l~~l~~~lp~L~i~~~~ls~~  261 (284)
T d2astb2         219 LELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTI  261 (284)
T ss_dssp             GGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCT
T ss_pred             HHHhcCCCCCEEeeeCC-CCH---HHHHHHHHhCccccccCccCCCC
Confidence            56677777777777776 321   112111 2344455555666544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.3e-15  Score=145.21  Aligned_cols=248  Identities=18%  Similarity=0.183  Sum_probs=154.1

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcc-cchhccCCCCCCEEEc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGK-IPTSFGKLCKLTSFSM   99 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~-~~~~l~~l~~L~~L~L   99 (743)
                      ++|||+++.+.......+.. ..+..+.++...+...+.  ......+|++||++ ++.+... +...+.++++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~--~~~~~~~L~~LdLs-~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLS-NSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCC--SCCCCBCCCEEECT-TCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchh--hhccCCCCCEEECC-CCccCHHHHHHHHHhCCCcccccc
Confidence            47888887764322221111 245667776665542222  23455678888888 5555433 3455778888888888


Q ss_pred             cCCcCcccchhhhhcccccccCCccEEEccCCc-Cccc-chhhccCCCCCCEEECcCc-cCccc-cchhcc-CCCCCCEE
Q 041683          100 RFTKLSQDISEILGIFSACVANELESLRLGSSQ-IFGH-LTNQLRRFKRLNSLDLSNT-ILDGS-IPFSLG-QISNLEYL  174 (743)
Q Consensus       100 ~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~~~~~~-~l~~L~~L  174 (743)
                      +++.++...+..+...+     +|++|++++|. ++.. +...+..+++|++|++++| .+++. ....+. ..++|+.|
T Consensus        79 ~~~~l~~~~~~~l~~~~-----~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L  153 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNS-----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  153 (284)
T ss_dssp             TTCBCCHHHHHHHTTCT-----TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             cccCCCcHHHHHHhcCC-----CCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchh
Confidence            88887776666666665     88888888864 4322 2223456788888888886 34422 122233 34788888


Q ss_pred             EccCCC--CccccChhhhcCCCCCCEEECCCCc-ceeecCCCCCCCccccEEEcCCC-cCCCCcchhhcCCCCCCEEEcc
Q 041683          175 DLSNNK--LNGTVSEIHFVNLTKLAFFRANGNS-LIFKINPNWVPPFQLTVLELRSC-HLGPRFPLWLQSQRELNDLDIS  250 (743)
Q Consensus       175 ~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~  250 (743)
                      +++++.  ++...-.....++++|++|++++|. ++......+..+++|++|++++| .+++.....+..+++|+.|+++
T Consensus       154 ~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~  233 (284)
T d2astb2         154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  233 (284)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             hhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeee
Confidence            888753  3321111134567888888888764 55455556677788888888886 4665666677888999999998


Q ss_pred             CCCCccccChhhhhhcccCceEecccCcccc
Q 041683          251 STRISAKIPRGFWNSIYQYFYLNISGNQIYG  281 (743)
Q Consensus       251 ~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~  281 (743)
                      ++ +++..-..+...+++|   .+..+.++.
T Consensus       234 ~~-~~d~~l~~l~~~lp~L---~i~~~~ls~  260 (284)
T d2astb2         234 GI-VPDGTLQLLKEALPHL---QINCSHFTT  260 (284)
T ss_dssp             TS-SCTTCHHHHHHHSTTS---EESCCCSCC
T ss_pred             CC-CCHHHHHHHHHhCccc---cccCccCCC
Confidence            87 4433333344445554   445555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=9.1e-16  Score=157.49  Aligned_cols=242  Identities=15%  Similarity=0.172  Sum_probs=160.2

Q ss_pred             CCCCCCccEEECcCCcCccc----CCccccCCCCCCEEECCCCcCccc----------CCccccCCCCCcEEEccCcccc
Q 041683          324 ENFSNNIEFLKLSKNNFSGD----IPDCWMNWLRLRALNLGHNNFTGS----------LPMSIGTLSSLLSLNLRNNILS  389 (743)
Q Consensus       324 ~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----------~~~~~~~l~~L~~L~L~~n~i~  389 (743)
                      +....++++|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|++|++++|.+.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            34467889999999887632    234566778899999987765421          1223456788999999999887


Q ss_pred             ccC----CcccCCCCCCCEEeCCCCcCcccCchhH------------HhcccCCcEEEccCCcCccc----CCccccCCC
Q 041683          390 GII----PTSFKNFSSLEVLDLGENELVGSIPSWI------------GERFSILKILNLRSNKFHGD----FPIQLCGLA  449 (743)
Q Consensus       390 ~~~----~~~~~~l~~L~~L~Ls~n~i~~~~~~~~------------~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~  449 (743)
                      ...    ...+..+++|++|++++|.+.......+            ....+.|+.+.+++|.+...    +...+...+
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~  186 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  186 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhh
Confidence            542    2344567889999999998752211111            12456789999999887632    223355678


Q ss_pred             CccEEEccCCccccccCccccccccccccCccchhhhhhccccCCCCcccccccceeeeceeeehhcccccccEEEccCC
Q 041683          450 FLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSEGQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKN  529 (743)
Q Consensus       450 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  529 (743)
                      .|+.|++++|.+.......+  +                                       .......+.|+.|++++|
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~--l---------------------------------------~~~l~~~~~L~~L~Ls~N  225 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHL--L---------------------------------------LEGLAYCQELKVLDLQDN  225 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHH--H---------------------------------------HTTGGGCTTCCEEECCSS
T ss_pred             hhcccccccccccccccccc--h---------------------------------------hhhhcchhhhcccccccc
Confidence            89999999998763210000  0                                       001122445789999999


Q ss_pred             cCccc----CchhhcccCCCCEEeCCCCcCcccCCCC----CC--CCCCccEEECcCCcCCCCC----Ccccc-CcCCCC
Q 041683          530 IFSGE----IPVEVTNLQGLQSLNLSHNLLTGRIPDN----IG--VMRSIESLDLSANQLSGQI----PQSMS-NLSFLN  594 (743)
Q Consensus       530 ~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~--~l~~L~~L~Ls~N~l~~~~----p~~l~-~l~~L~  594 (743)
                      .++..    +...+..+++|++|+|++|.+++.....    +.  ..+.|++|++++|+|+...    ...+. +.++|+
T Consensus       226 ~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~  305 (344)
T d2ca6a1         226 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  305 (344)
T ss_dssp             CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             cccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCC
Confidence            98643    4456778899999999999987532222    22  2367999999999987432    23332 467899


Q ss_pred             eeeCcCCccccc
Q 041683          595 HLNLSNNNLVGK  606 (743)
Q Consensus       595 ~L~ls~N~l~~~  606 (743)
                      +|++++|.+...
T Consensus       306 ~L~l~~N~~~~~  317 (344)
T d2ca6a1         306 FLELNGNRFSEE  317 (344)
T ss_dssp             EEECTTSBSCTT
T ss_pred             EEECCCCcCCCc
Confidence            999999998643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.2e-14  Score=127.28  Aligned_cols=89  Identities=16%  Similarity=0.192  Sum_probs=65.9

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCC
Q 041683           13 RLGNLTSLKYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLC   92 (743)
Q Consensus        13 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~   92 (743)
                      .|.+...+|+|||++|+|+.+ +..+..+++|++|+|++|.++ .++  .|..+++|++|+++ +|.++...+..+..++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls-~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVN-NNRICRIGEGLDQALP   87 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECC-SSCCCEECSCHHHHCT
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcc-cccccCCCcccccccc
Confidence            467777888888888888666 456677888888888888887 665  47788888888888 6666655555556677


Q ss_pred             CCCEEEccCCcCcc
Q 041683           93 KLTSFSMRFTKLSQ  106 (743)
Q Consensus        93 ~L~~L~L~~n~l~~  106 (743)
                      +|++|++++|++..
T Consensus        88 ~L~~L~L~~N~i~~  101 (162)
T d1a9na_          88 DLTELILTNNSLVE  101 (162)
T ss_dssp             TCCEEECCSCCCCC
T ss_pred             ccccceeccccccc
Confidence            77777777776643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.5e-14  Score=126.26  Aligned_cols=125  Identities=17%  Similarity=0.093  Sum_probs=87.4

Q ss_pred             CCCccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEe
Q 041683          327 SNNIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLD  406 (743)
Q Consensus       327 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~  406 (743)
                      +.++++|+|++|+|+.+ +..+..+++|+.|++++|+++..  +.|..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            45678888888888744 55667778888888888888743  3477778888888888888766666667778888888


Q ss_pred             CCCCcCcccCch-hHHhcccCCcEEEccCCcCcccCC---ccccCCCCccEEE
Q 041683          407 LGENELVGSIPS-WIGERFSILKILNLRSNKFHGDFP---IQLCGLAFLQILD  455 (743)
Q Consensus       407 Ls~n~i~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~  455 (743)
                      +++|++. .++. .....+++|++|++++|++.....   ..+..+++|++||
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888776 4443 223357778888888887763221   2356677777776

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=7.3e-14  Score=143.02  Aligned_cols=137  Identities=15%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             CCCCCEEECcCccCcccc----chhccCCCCCCEEEccCCCCccc----cChhhhcCCCCCCEEECCCCcceee----cC
Q 041683          144 FKRLNSLDLSNTILDGSI----PFSLGQISNLEYLDLSNNKLNGT----VSEIHFVNLTKLAFFRANGNSLIFK----IN  211 (743)
Q Consensus       144 l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~  211 (743)
                      .+.|+.+++++|.++...    ...+..++.|++|++++|++...    .-...+..+++|+.|++++|.+...    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            344445555444443211    12233344455555555544311    0011234444555555555544321    11


Q ss_pred             CCCCCCccccEEEcCCCcCCCCcc----hhhcC--CCCCCEEEccCCCCccccCh----hhhhhcccCceEecccCccc
Q 041683          212 PNWVPPFQLTVLELRSCHLGPRFP----LWLQS--QRELNDLDISSTRISAKIPR----GFWNSIYQYFYLNISGNQIY  280 (743)
Q Consensus       212 ~~~~~~~~L~~L~l~~n~l~~~~~----~~l~~--l~~L~~L~l~~n~i~~~~~~----~~~~~l~~L~~L~l~~n~l~  280 (743)
                      ..+..+++|++|++++|.++....    ..+..  .+.|++|++++|.++.....    .+....+.|++|++++|.+.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            223344455555555555543222    22222  35677888888877643222    22234567777887777764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=8.7e-13  Score=111.75  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=47.7

Q ss_pred             CEEECCCCCCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCEEEcc
Q 041683           21 KYLDLSSNELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTSFSMR  100 (743)
Q Consensus        21 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~L~L~  100 (743)
                      |+|+|++|+++...  .+..+++|++|++++|.++ .+|. .++.+++|++|+++ +|.+++. | .+.++++|++|+++
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~-~N~i~~l-~-~~~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQAS-DNALENV-D-GVANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECC-SSCCCCC-G-GGTTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccC-cchh-hhhhhhcccccccc-ccccccc-C-ccccccccCeEECC
Confidence            56777777775442  3666677777777777776 5665 56667777777776 4455432 2 35556666666666


Q ss_pred             CCcCc
Q 041683          101 FTKLS  105 (743)
Q Consensus       101 ~n~l~  105 (743)
                      +|++.
T Consensus        74 ~N~i~   78 (124)
T d1dcea3          74 NNRLQ   78 (124)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            55554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=6.2e-13  Score=112.66  Aligned_cols=102  Identities=25%  Similarity=0.321  Sum_probs=63.5

Q ss_pred             cEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCC
Q 041683          331 EFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGEN  410 (743)
Q Consensus       331 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n  410 (743)
                      +.|++++|+++. ++ .+..+++|++|++++|+++ .+|..+..+++|++|++++|.+++. + .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            356777777763 23 3666677777777777776 4455666677777777777777643 2 3666677777777777


Q ss_pred             cCcccCch-hHHhcccCCcEEEccCCcCc
Q 041683          411 ELVGSIPS-WIGERFSILKILNLRSNKFH  438 (743)
Q Consensus       411 ~i~~~~~~-~~~~~l~~L~~L~L~~n~l~  438 (743)
                      ++. .++. ..+..+++|++|++++|++.
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            765 3332 22235666666666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.4e-11  Score=108.95  Aligned_cols=86  Identities=20%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             ccEEEccCC-cCcccCchhhcccCCCCEEeCCCCcCcccCCCCCCCCCCccEEECcCCcCCCCCCccccCcCCCCeeeCc
Q 041683          521 VRSIDVSKN-IFSGEIPVEVTNLQGLQSLNLSHNLLTGRIPDNIGVMRSIESLDLSANQLSGQIPQSMSNLSFLNHLNLS  599 (743)
Q Consensus       521 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls  599 (743)
                      +++|++++| .++...+..|.++++|+.|+|++|+|+...|.+|..+++|++|+|++|+|+...+..|.. ..|++|+|+
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccC
Confidence            466777655 366666777889999999999999999777888999999999999999999555555654 479999999


Q ss_pred             CCcccccC
Q 041683          600 NNNLVGKI  607 (743)
Q Consensus       600 ~N~l~~~~  607 (743)
                      +|++.+..
T Consensus       112 ~Np~~C~C  119 (156)
T d2ifga3         112 GNPLHCSC  119 (156)
T ss_dssp             SSCCCCCG
T ss_pred             CCcccCCc
Confidence            99997654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=2e-13  Score=126.53  Aligned_cols=115  Identities=22%  Similarity=0.290  Sum_probs=63.3

Q ss_pred             cCchhHHhcccCCcEEEccCCcCcccCCccccCCCCccEEEccCCccccccCccccccccccccCccchhhhhhccccCC
Q 041683          415 SIPSWIGERFSILKILNLRSNKFHGDFPIQLCGLAFLQILDVASNSLSGTIPRCINNLSAMAITDSYDQAVILYSSLRSE  494 (743)
Q Consensus       415 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~  494 (743)
                      .++..+. .+++|++|+|++|+++. ++ .+..+++|+.|++++|++. .+|..+..                       
T Consensus        39 ~l~~sl~-~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~-----------------------   91 (198)
T d1m9la_          39 KMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-----------------------   91 (198)
T ss_dssp             CCHHHHH-HTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH-----------------------
T ss_pred             hhhhHHh-cccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc-----------------------
Confidence            3444443 46666666666666663 33 3666666666666666665 22221111                       


Q ss_pred             CCcccccccceeeeceeeehhcccccccEEEccCCcCcccCchhhcccCCCCEEeCCCCcCcccCC-CCCCCCCCccEEE
Q 041683          495 GQSEIFEDASLVMKGVLVEYNSILNLVRSIDVSKNIFSGEIPVEVTNLQGLQSLNLSHNLLTGRIP-DNIGVMRSIESLD  573 (743)
Q Consensus       495 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~  573 (743)
                                             ++.|+.|++++|+++..  ..+..+++|+.|++++|+++.... ..+..+++|+.|+
T Consensus        92 -----------------------~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~  146 (198)
T d1m9la_          92 -----------------------ADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             -----------------------HHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred             -----------------------ccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceee
Confidence                                   12246666666666532  235566666666666666653211 3455666666666


Q ss_pred             CcCCcCCC
Q 041683          574 LSANQLSG  581 (743)
Q Consensus       574 Ls~N~l~~  581 (743)
                      +++|++..
T Consensus       147 L~~N~l~~  154 (198)
T d1m9la_         147 LAGNPLYN  154 (198)
T ss_dssp             ECSSHHHH
T ss_pred             cCCCcccc
Confidence            66666653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.3e-11  Score=109.16  Aligned_cols=107  Identities=20%  Similarity=0.128  Sum_probs=70.6

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCC-cCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeC
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHN-NFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDL  407 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  407 (743)
                      ..+.++.+++.+. ..|..+..+++|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.+.+|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3455666666665 34555666677777777654 366555566777777777777777777666677777777777777


Q ss_pred             CCCcCcccCchhHHhcccCCcEEEccCCcCc
Q 041683          408 GENELVGSIPSWIGERFSILKILNLRSNKFH  438 (743)
Q Consensus       408 s~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~  438 (743)
                      ++|+++ .+|...+. ...|+.|+|++|.+.
T Consensus        88 s~N~l~-~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALE-SLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCS-CCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             cCCCCc-ccChhhhc-cccccccccCCCccc
Confidence            777776 66665553 335777777777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=8.2e-13  Score=122.38  Aligned_cols=127  Identities=16%  Similarity=0.229  Sum_probs=68.8

Q ss_pred             CCCEEECCCC--CCCCCCchhhcCCCCCCEEEcCCCccccccCcccccCCCCCCEEEcCCCCcCCcccchhccCCCCCCE
Q 041683           19 SLKYLDLSSN--ELNSTVLGWLSKVNDLEFLSVYSNRLQGNVSSLGLENLTSIKRLYLSENDELGGKIPTSFGKLCKLTS   96 (743)
Q Consensus        19 ~L~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~~~~l~~~~~~~l~~l~~L~~   96 (743)
                      .++.+++++.  .+ ...+..+..+++|++|+|++|.|+ .++  .+..+++|++|+++ +|.++ .+|.....+++|++
T Consensus        24 ~~~~~~l~~~~~~i-~~l~~sl~~L~~L~~L~Ls~n~I~-~i~--~l~~l~~L~~L~Ls-~N~i~-~i~~~~~~~~~L~~   97 (198)
T d1m9la_          24 EAEKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLG-RNLIK-KIENLDAVADTLEE   97 (198)
T ss_dssp             TCSCEECCBCCTTC-CCCHHHHHHTTTCCEEECSEEEES-CCC--CHHHHTTCCEEECC-EEEEC-SCSSHHHHHHHCCE
T ss_pred             ccceeeeecccCch-hhhhhHHhcccccceeECcccCCC-Ccc--cccCCccccChhhc-ccccc-cccccccccccccc
Confidence            3455566543  22 224556777777777777777776 554  36777777777777 44553 23333333445566


Q ss_pred             EEccCCcCcccchhhhhcccccccCCccEEEccCCcCcccch-hhccCCCCCCEEECcCccCc
Q 041683           97 FSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGHLT-NQLRRFKRLNSLDLSNTILD  158 (743)
Q Consensus        97 L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~Ls~n~l~  158 (743)
                      |++++|.++..  ..+..++     +|++|++++|++..... ..+..+++|++|++++|.+.
T Consensus        98 L~l~~N~i~~l--~~~~~l~-----~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          98 LWISYNQIASL--SGIEKLV-----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EECSEEECCCH--HHHHHHH-----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccc--ccccccc-----cccccccccchhccccccccccCCCccceeecCCCccc
Confidence            66665555431  2233333     55555555555533221 23455555555555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.9e-08  Score=89.06  Aligned_cols=121  Identities=24%  Similarity=0.128  Sum_probs=70.0

Q ss_pred             CccEEECcCCcCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccC--CcccCCCCCCCEEe
Q 041683          329 NIEFLKLSKNNFSGDIPDCWMNWLRLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGII--PTSFKNFSSLEVLD  406 (743)
Q Consensus       329 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~  406 (743)
                      ..+.|++++....    ..+..+..+..++..++... .++..+..+++|++|++++|+|+.+.  +..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3455666554432    12333333334444433332 33334456777888888888777543  24456677888888


Q ss_pred             CCCCcCcccCchhHHhcccCCcEEEccCCcCcccCCc-------cccCCCCccEEE
Q 041683          407 LGENELVGSIPSWIGERFSILKILNLRSNKFHGDFPI-------QLCGLAFLQILD  455 (743)
Q Consensus       407 Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~  455 (743)
                      +++|.|+ .+++..+-....|+.|++++|++......       .+..+|+|+.||
T Consensus        98 Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          98 LSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            8888886 55543332445678888888877654332       245677777775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5.2e-08  Score=86.16  Aligned_cols=105  Identities=25%  Similarity=0.217  Sum_probs=57.7

Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCcEEEccCccccccCCcccCCCCCCCEEeCCCCcCcccCch--hHHhcccCCcEE
Q 041683          353 RLRALNLGHNNFTGSLPMSIGTLSSLLSLNLRNNILSGIIPTSFKNFSSLEVLDLGENELVGSIPS--WIGERFSILKIL  430 (743)
Q Consensus       353 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~~l~~L~~L  430 (743)
                      ..+.|++++++..    ..+..+..+..+...++... .++..+..+++|++|++++|+++ .++.  ..+..+++|+.|
T Consensus        23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L   96 (162)
T d1koha1          23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKIL   96 (162)
T ss_dssp             SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCC
T ss_pred             hhCeeecccCCCC----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCccccc
Confidence            3455666655432    12333344444444444333 33344456777777777777776 3321  233457777777


Q ss_pred             EccCCcCcccCCccccCCCCccEEEccCCcccc
Q 041683          431 NLRSNKFHGDFPIQLCGLAFLQILDVASNSLSG  463 (743)
Q Consensus       431 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  463 (743)
                      ++++|.+....+..+.....|+.|++++|++..
T Consensus        97 ~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          97 NLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             ccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            777777774433233344456777777776653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=2.3e-05  Score=68.99  Aligned_cols=110  Identities=12%  Similarity=0.117  Sum_probs=50.7

Q ss_pred             CCCCCCEEEcCCCCcCCcc----cchhccCCCCCCEEEccCCcCcccchh----hhhcccccccCCccEEEccCCcCccc
Q 041683           65 NLTSIKRLYLSENDELGGK----IPTSFGKLCKLTSFSMRFTKLSQDISE----ILGIFSACVANELESLRLGSSQIFGH  136 (743)
Q Consensus        65 ~l~~L~~L~Ls~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~~~~~~L~~L~L~~n~~~~~  136 (743)
                      +.++|++|+|++++.+...    +..++...++|++|++++|.+......    .+...+     .|++|++++|.+...
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~-----~L~~L~L~~n~i~~~   87 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSP-----SLRVLNVESNFLTPE   87 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCS-----SCCEEECCSSBCCHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcc-----cccceeeehhhcchH
Confidence            3455666666532333221    222345555666666666655432221    122222     455566655555332


Q ss_pred             ----chhhccCCCCCCEEECcCccCccc-------cchhccCCCCCCEEEccCC
Q 041683          137 ----LTNQLRRFKRLNSLDLSNTILDGS-------IPFSLGQISNLEYLDLSNN  179 (743)
Q Consensus       137 ----~~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n  179 (743)
                          +..++...++|++|++++|.+...       +...+...+.|+.|+++.+
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                122344555566666665544321       1223334455555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=1.5e-05  Score=70.10  Aligned_cols=86  Identities=16%  Similarity=0.150  Sum_probs=42.0

Q ss_pred             CCCccEEECcCC-cCccc----CCccccCCCCCCEEECCCCcCcccC----CccccCCCCCcEEEccCcccccc----CC
Q 041683          327 SNNIEFLKLSKN-NFSGD----IPDCWMNWLRLRALNLGHNNFTGSL----PMSIGTLSSLLSLNLRNNILSGI----IP  393 (743)
Q Consensus       327 ~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~----~~  393 (743)
                      .+.|++|+|+++ .+...    +...+...+.|++|+|++|.+....    ...+...+.|++|++++|.++..    +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            466777777653 34321    1223445566666666666665221    12233345555555555555422    11


Q ss_pred             cccCCCCCCCEEeCCCCcC
Q 041683          394 TSFKNFSSLEVLDLGENEL  412 (743)
Q Consensus       394 ~~~~~l~~L~~L~Ls~n~i  412 (743)
                      .++...++|++|++++|.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSS
T ss_pred             HHHHhCCcCCEEECCCCcC
Confidence            2334445555555555543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.19  E-value=0.00024  Score=62.13  Aligned_cols=115  Identities=19%  Similarity=0.176  Sum_probs=51.1

Q ss_pred             CCCCCCEEEcCCCCcCCcc----cchhccCCCCCCEEEccCCcCcccchhhhhcccccccCCccEEEccCCcCccc----
Q 041683           65 NLTSIKRLYLSENDELGGK----IPTSFGKLCKLTSFSMRFTKLSQDISEILGIFSACVANELESLRLGSSQIFGH----  136 (743)
Q Consensus        65 ~l~~L~~L~Ls~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~L~~L~L~~n~~~~~----  136 (743)
                      +.+.|++|++++.+.++..    +-.++...++|++|++++|.++......+...-. ....++.+++++|.+...    
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~-~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK-VNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH-HCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHh-hcccchhhhhccccccchhHHH
Confidence            4455666666532333221    2223445566666666666554432222211100 112555666655555322    


Q ss_pred             chhhccCCCCCCEEEC--cCccCccc----cchhccCCCCCCEEEccCCC
Q 041683          137 LTNQLRRFKRLNSLDL--SNTILDGS----IPFSLGQISNLEYLDLSNNK  180 (743)
Q Consensus       137 ~~~~l~~l~~L~~L~L--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~  180 (743)
                      +...+...++|+.++|  ++|.+...    +...+...+.|++|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            1233445555655444  33444321    22334445566666655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.86  E-value=0.0002  Score=62.67  Aligned_cols=63  Identities=14%  Similarity=0.184  Sum_probs=31.2

Q ss_pred             CCCccEEECcC-CcCccc----CCccccCCCCCCEEECCCCcCcccC----CccccCCCCCcEEEccCcccc
Q 041683          327 SNNIEFLKLSK-NNFSGD----IPDCWMNWLRLRALNLGHNNFTGSL----PMSIGTLSSLLSLNLRNNILS  389 (743)
Q Consensus       327 ~~~L~~L~Ls~-n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~  389 (743)
                      .++|++|++++ +.++..    +..++...+.|++|++++|.++...    ...+...++++.+++++|.+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            45677777765 334321    1233445566666666666655221    122333445555555555443