Citrus Sinensis ID: 041717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
MTNIANATSRNDRLNNNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGLALIYQPQVSFFFEVLTLNRME
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHHHccccccccccccccccccccccEEEEHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHcccccccccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHccHHHHHHHccccHHHHHHHccccccccccccccccccccccccccEEEccccccc
Coil and Loop (DISEMBL)
mtnianatsrndrlnnnmkpgydLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLnsqadigpdcyraidiitrncwpamltslgftaeegnilrgycdassapspgglaliyqpqvsFFFEVLTLNRME
Flexible Loop (DISEMBL)
mtnianatsrndrlnnnmkpgYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGLALIYQPQVSFFFEVLTLNRME
Low Complexity Region (SEG)
MTNIANATSRNDRLNNNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGLALIYQPQVSFFFEVLTLNRME
Disordered region (IsUnstruct)
********************GYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGLALIYQPQVSFFFEVLTL****
Disordered Region (DISOPRED)
********************************GLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYC***************QPQVSFFFEVLTLN***
Disordered Region (DISEMBL)
MTNIANATSRNDRLNNNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGLALIYQPQVSFFFEVLTLNRME
Disordered Region (DISPRO)
************RLNNNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDA*************QPQVSFFFEVLTL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTNIANATSRNDRLNNNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGLALIYQPQVSFFFEVLTLNRME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q9T039	127	Egg cell-secreted protein	yes	no	0.641	0.661	0.593	7e-26
Q9SJ24	125	Egg cell-secreted protein	no	no	0.534	0.56	0.614	3e-23
Q9SJ23	125	Egg cell-secreted protein	no	no	0.625	0.656	0.541	2e-22
Q9SRD8	158	Egg cell-secreted protein	no	no	0.633	0.525	0.469	5e-19
Q9FGG1	155	Egg cell-secreted protein	no	no	0.633	0.535	0.408	4e-14

>sp|Q9T039|EC14_ARATH Egg cell-secreted protein 1.4 OS=Arabidopsis thaliana GN=EC1.4 PE=2 SV=1

 Score =  115 bits (288), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 7/91 (7%)

Query: 23  DLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAML 82
           ++  RL+ SGGL ECWN L E+KSC+NEI +FFLN +  +G  C  ++DIIT NCWPAML
Sbjct: 35  NIAARLQ-SGGLMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAML 93

Query: 83  TSLGFTAEEGNILRGYC------DASSAPSP 107
           TSLGFT EE N+LRG+C      D+S APSP
Sbjct: 94  TSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ24|EC12_ARATH Egg cell-secreted protein 1.2 OS=Arabidopsis thaliana GN=EC1.2 PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 58/70 (82%)

Query: 32  GGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEE 91
           GGL ECWN L E+KSC+NEI +FFLN +  +G DC +A+++IT +CWPAMLTSLGFT++E
Sbjct: 41  GGLMECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDE 100

Query: 92  GNILRGYCDA 101
            N+LRG+C +
Sbjct: 101 TNVLRGFCQS 110

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJ23|EC13_ARATH Egg cell-secreted protein 1.3 OS=Arabidopsis thaliana GN=EC1.3 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 3/85 (3%)

Query: 32  GGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEE 91
           GGL +CW+ L E+KSC+NEI +FFLN +  +G  C  A+D+IT +CWPAMLTSLGFT EE
Sbjct: 41  GGLMQCWDALYELKSCTNEIVLFFLNGETKLGYGCCNAVDVITTDCWPAMLTSLGFTLEE 100

Query: 92  GNILRGYCDASSAPSPGGLALIYQP 116
            N+LRG+C    +P+ GG +    P
Sbjct: 101 TNVLRGFCQ---SPNSGGSSPALSP 122

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRD8|EC11_ARATH Egg cell-secreted protein 1.1 OS=Arabidopsis thaliana GN=EC1.1 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 53/83 (63%)

Query: 19  KPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCW 78
            P   L  RL+       CW++LM+++ CS E+ +FFLN +  IGP C  AI  I R CW
Sbjct: 39  SPTTSLVYRLKLDEDTGYCWDSLMQLQHCSGELILFFLNGETYIGPGCCSAIRTIGRKCW 98

Query: 79  PAMLTSLGFTAEEGNILRGYCDA 101
           P M+  LGFTA+EG++L+GYCD 
Sbjct: 99  PTMIGVLGFTAQEGDMLQGYCDG 121

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGG1|EC15_ARATH Egg cell-secreted protein 1.5 OS=Arabidopsis thaliana GN=EC1.5 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 55/98 (56%), Gaps = 15/98 (15%)

Query: 30  ASGGLTECWNTLMEMKSCSNEIFIFFLNS--------QADIGPDCYRAIDIITRNCWPAM 81
            +G L +CWN  +E+KSC++EI  FFL+         +  I  DC  AI ++ ++CW  M
Sbjct: 46  GAGNLMDCWNAGLELKSCTDEIVKFFLSQTGTSEPPVKGGIDKDCCGAIGLVVKDCWSVM 105

Query: 82  LTSLGFTAEEGNILRGYC-------DASSAPSPGGLAL 112
            TSLG T  EGN LR YC       + S +P+P  LAL
Sbjct: 106 FTSLGLTTMEGNNLREYCEFQAEKSELSPSPAPETLAL 143

Involved in the regulation of gamete interactions during the double fertilization and to prevent multiple-pollen tube attraction; mediates the redistribution of the gamete fusogen HAP2/GCS1 to the cell surface after secretion upon sperm arrival.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
359482498	128	PREDICTED: uncharacterized protein LOC10	0.832	0.851	0.633	6e-34
296082551	135	unnamed protein product [Vitis vinifera]	0.740	0.718	0.727	1e-33
224060465	146	predicted protein [Populus trichocarpa]	0.862	0.773	0.580	2e-31
255578404	136	conserved hypothetical protein [Ricinus	0.763	0.735	0.590	2e-26
15235039	127	uncharacterized protein [Arabidopsis tha	0.641	0.661	0.593	5e-24
116830619	128	unknown [Arabidopsis thaliana]	0.641	0.656	0.593	6e-24
297802032	127	hypothetical protein ARALYDRAFT_490711 [	0.587	0.606	0.628	1e-22
255578398	135	conserved hypothetical protein [Ricinus	0.625	0.607	0.619	2e-22
297825031	125	hypothetical protein ARALYDRAFT_900605 [	0.580	0.608	0.573	2e-21
15227092	125	uncharacterized protein [Arabidopsis tha	0.534	0.56	0.614	2e-21

>gi|359482498|ref|XP_002274398.2| PREDICTED: uncharacterized protein LOC100260034 [Vitis vinifera] gi|147772490|emb|CAN65099.1| hypothetical protein VITISV_039724 [Vitis vinifera] gi|297743029|emb|CBI35896.3| unnamed protein product [Vitis vinifera]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 71/112 (63%), Positives = 83/112 (74%), Gaps = 3/112 (2%)

Query: 4   IANATSRNDRLNNNMKPGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIG 63
           +ANA +  D   N   PG DLT RLE SGGL ECWN LME++ C+NEI +FFLN Q  +G
Sbjct: 16  MANAAATRDLPTN---PGLDLTTRLETSGGLVECWNALMEIRQCTNEIILFFLNGQTVLG 72

Query: 64  PDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGLALIYQ 115
           P+C +AI IITRNCWPAMLTSLGFTAEEGNIL+GYC+ASS P       +YQ
Sbjct: 73  PECCQAISIITRNCWPAMLTSLGFTAEEGNILQGYCNASSGPPTPASPPLYQ 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082551|emb|CBI21556.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 80/99 (80%), Gaps = 2/99 (2%)

Query: 4   IANATSRNDRLNNNMKPG-YDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADI 62
           I NA++  + L  +MKP   DL  RLE SGGL ECWN L+E+KSC+NEI +FFLN QADI
Sbjct: 17  ITNASASRE-LPMSMKPAELDLVARLETSGGLVECWNALVELKSCTNEIILFFLNGQADI 75

Query: 63  GPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDA 101
           GPDC  AIDIITRNCWP MLTSLGFTAEEGNILRGYCDA
Sbjct: 76  GPDCCGAIDIITRNCWPTMLTSLGFTAEEGNILRGYCDA 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060465|ref|XP_002300213.1| predicted protein [Populus trichocarpa] gi|222847471|gb|EEE85018.1| predicted protein [Populus trichocarpa]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 89/131 (67%), Gaps = 18/131 (13%)

Query: 2   TNIANATSRNDRLNNNMKPGYD-LTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQA 60
           TNI+ A +R+  +N   KPG++ L+ RLE  G L ECWN L+E+KSC+NEI +FF+  QA
Sbjct: 19  TNISTA-ARDILIN---KPGFNSLSARLEDEGSLVECWNALVEIKSCTNEIVLFFMTGQA 74

Query: 61  DIGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDAS-----------SAPSP-- 107
           DIGPDC RAI  IT NCWPAM TSLGFT EEGNILRGYCDAS           SAPSP  
Sbjct: 75  DIGPDCCRAIHTITHNCWPAMFTSLGFTDEEGNILRGYCDASPNSPSIYFSPASAPSPLA 134

Query: 108 GGLALIYQPQV 118
            G    YQP +
Sbjct: 135 AGAPAQYQPML 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578404|ref|XP_002530067.1| conserved hypothetical protein [Ricinus communis] gi|223530420|gb|EEF32307.1| conserved hypothetical protein [Ricinus communis]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 74/105 (70%), Gaps = 5/105 (4%)

Query: 4   IANATSRNDRLNNNMKPGYDLTIRLE--ASGGLTECWNTLMEMKSCSNEIFIFFLNSQAD 61
           IA+AT+  D        G  L  R+E  +S  L +CWN L+E+KSCSNEI +FFLN   D
Sbjct: 16  IASATAARDV---PFISGNSLEARIEGSSSSSLVDCWNALIEIKSCSNEIILFFLNGHTD 72

Query: 62  IGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPS 106
           IG DC R+I I T NCWPAMLTS+GFTAEEGNILRGYCD +S+ S
Sbjct: 73  IGADCCRSIAIFTHNCWPAMLTSIGFTAEEGNILRGYCDNASSSS 117

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235039|ref|NP_195644.1| uncharacterized protein [Arabidopsis thaliana] gi|75213705|sp|Q9T039.1|EC14_ARATH RecName: Full=Egg cell-secreted protein 1.4; Flags: Precursor gi|4914446|emb|CAB43649.1| hypothetical protein [Arabidopsis thaliana] gi|7270918|emb|CAB80597.1| hypothetical protein [Arabidopsis thaliana] gi|91805627|gb|ABE65542.1| hypothetical protein At4g39340 [Arabidopsis thaliana] gi|332661658|gb|AEE87058.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  115 bits (288), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 7/91 (7%)

Query: 23  DLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAML 82
           ++  RL+ SGGL ECWN L E+KSC+NEI +FFLN +  +G  C  ++DIIT NCWPAML
Sbjct: 35  NIAARLQ-SGGLMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAML 93

Query: 83  TSLGFTAEEGNILRGYC------DASSAPSP 107
           TSLGFT EE N+LRG+C      D+S APSP
Sbjct: 94  TSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830619|gb|ABK28267.1| unknown [Arabidopsis thaliana]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 67/91 (73%), Gaps = 7/91 (7%)

Query: 23  DLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAML 82
           ++  RL+ SGGL ECWN L E+KSC+NEI +FFLN +  +G  C  ++DIIT NCWPAML
Sbjct: 35  NIAARLQ-SGGLMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAML 93

Query: 83  TSLGFTAEEGNILRGYC------DASSAPSP 107
           TSLGFT EE N+LRG+C      D+S APSP
Sbjct: 94  TSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802032|ref|XP_002868900.1| hypothetical protein ARALYDRAFT_490711 [Arabidopsis lyrata subsp. lyrata] gi|297314736|gb|EFH45159.1| hypothetical protein ARALYDRAFT_490711 [Arabidopsis lyrata subsp. lyrata]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/78 (62%), Positives = 60/78 (76%), Gaps = 1/78 (1%)

Query: 23  DLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAML 82
           ++  RL+ SGGL ECWN L E+KSC+NEI +FFLN +  +G  C  A+DIIT NCWPAML
Sbjct: 35  NIAARLQ-SGGLMECWNVLYELKSCTNEIVLFFLNGETKLGVSCCEAVDIITTNCWPAML 93

Query: 83  TSLGFTAEEGNILRGYCD 100
           TSLGFT EE N+LRG+C 
Sbjct: 94  TSLGFTPEEANVLRGFCQ 111

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578398|ref|XP_002530064.1| conserved hypothetical protein [Ricinus communis] gi|223530417|gb|EEF32304.1| conserved hypothetical protein [Ricinus communis]

 Score =  110 bits (275), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 63/92 (68%), Gaps = 10/92 (10%)

Query: 18  MKPGYDLT----IRLEAS----GGLTECWNTLMEMKSCSNEIFIFFLNSQADI--GPDCY 67
           +K  YD T    + LE S    GGL +CWN LME+KSCSNEI +FFLN Q DI  G DC 
Sbjct: 27  IKQAYDNTETRVLLLETSSSSGGGLVDCWNALMEIKSCSNEIILFFLNGQTDITIGADCC 86

Query: 68  RAIDIITRNCWPAMLTSLGFTAEEGNILRGYC 99
            AI II  NCWP+MLTSLGFT EE NIL GYC
Sbjct: 87  SAISIIAHNCWPSMLTSLGFTVEEVNILNGYC 118

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825031|ref|XP_002880398.1| hypothetical protein ARALYDRAFT_900605 [Arabidopsis lyrata subsp. lyrata] gi|297326237|gb|EFH56657.1| hypothetical protein ARALYDRAFT_900605 [Arabidopsis lyrata subsp. lyrata]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 61/82 (74%), Gaps = 6/82 (7%)

Query: 32  GGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEE 91
           GGL +CW+ L E+KSC+NEI +FFLN +  +G  C  A+D+IT +CWPAMLTSLGFT+EE
Sbjct: 41  GGLMQCWDALYELKSCTNEIVLFFLNGETKLGSGCCNAVDVITTDCWPAMLTSLGFTSEE 100

Query: 92  GNILRGYCD------ASSAPSP 107
            N+LRG+C       +S APSP
Sbjct: 101 TNVLRGFCQSPTSGGSSPAPSP 122

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15227092|ref|NP_179766.1| uncharacterized protein [Arabidopsis thaliana] gi|75206217|sp|Q9SJ24.1|EC12_ARATH RecName: Full=Egg cell-secreted protein 1.2; Flags: Precursor gi|4417269|gb|AAD20394.1| hypothetical protein [Arabidopsis thaliana] gi|91805455|gb|ABE65456.1| hypothetical protein At2g21740 [Arabidopsis thaliana] gi|330252124|gb|AEC07218.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 58/70 (82%)

Query: 32  GGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAEE 91
           GGL ECWN L E+KSC+NEI +FFLN +  +G DC +A+++IT +CWPAMLTSLGFT++E
Sbjct: 41  GGLMECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWPAMLTSLGFTSDE 100

Query: 92  GNILRGYCDA 101
            N+LRG+C +
Sbjct: 101 TNVLRGFCQS 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2136293	127	EC1.4 "AT4G39340" [Arabidopsis	0.641	0.661	0.593	1.1e-25
TAIR|locus:2052536	125	EC1.2 "AT2G21740" [Arabidopsis	0.679	0.712	0.521	2e-24
TAIR|locus:2052556	125	EC1.3 "AT2G21750" [Arabidopsis	0.687	0.72	0.510	6.1e-23
TAIR|locus:2030136	158	EC1.1 "AT1G76750" [Arabidopsis	0.679	0.563	0.449	5.1e-19
TAIR|locus:2176080	155	EC1.5 "AT5G64720" [Arabidopsis	0.625	0.529	0.412	6.2e-14
TAIR|locus:504955577	119	AT3G48675 "AT3G48675" [Arabido	0.534	0.588	0.293	8.1e-05
TAIR|locus:4010713622	120	AT2G14378 [Arabidopsis thalian	0.351	0.383	0.319	0.00072
TAIR|locus:504954909	207	AT5G54062 "AT5G54062" [Arabido	0.366	0.231	0.326	0.00099

TAIR|locus:2136293 EC1.4 "AT4G39340" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 54/91 (59%), Positives = 67/91 (73%)

Query:    23 DLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAML 82
             ++  RL+ SGGL ECWN L E+KSC+NEI +FFLN +  +G  C  ++DIIT NCWPAML
Sbjct:    35 NIAARLQ-SGGLMECWNALYELKSCTNEIVLFFLNGETKLGVSCCESVDIITTNCWPAML 93

Query:    83 TSLGFTAEEGNILRGYC------DASSAPSP 107
             TSLGFT EE N+LRG+C      D+S APSP
Sbjct:    94 TSLGFTPEEANVLRGFCQNPNSGDSSPAPSP 124

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052536 EC1.2 "AT2G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 49/94 (52%), Positives = 69/94 (73%)

Query:    23 DLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAML 82
             ++  RL   GGL ECWN L E+KSC+NEI +FFLN +  +G DC +A+++IT +CWPAML
Sbjct:    33 NIAARLNG-GGLMECWNALYELKSCTNEIVLFFLNGETKLGVDCCQAVEVITTDCWPAML 91

Query:    83 TSLGFTAEEGNILRGYCDA----SSAPSPGGLAL 112
             TSLGFT++E N+LRG+C +     S+P+P  + L
Sbjct:    92 TSLGFTSDETNVLRGFCQSPNSGGSSPAPSSVKL 125

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2052556 EC1.3 "AT2G21750" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 48/94 (51%), Positives = 65/94 (69%)

Query:    23 DLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAML 82
             ++  RL   GGL +CW+ L E+KSC+NEI +FFLN +  +G  C  A+D+IT +CWPAML
Sbjct:    33 NIAARL-TGGGLMQCWDALYELKSCTNEIVLFFLNGETKLGYGCCNAVDVITTDCWPAML 91

Query:    83 TSLGFTAEEGNILRGYCDASSAPSPGGLALIYQP 116
             TSLGFT EE N+LRG+C +   P+ GG +    P
Sbjct:    92 TSLGFTLEETNVLRGFCQS---PNSGGSSPALSP 122

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2030136 EC1.1 "AT1G76750" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 40/89 (44%), Positives = 57/89 (64%)

Query:    20 PGYDLTIRLEASGGLTECWNTLMEMKSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWP 79
             P   L  RL+       CW++LM+++ CS E+ +FFLN +  IGP C  AI  I R CWP
Sbjct:    40 PTTSLVYRLKLDEDTGYCWDSLMQLQHCSGELILFFLNGETYIGPGCCSAIRTIGRKCWP 99

Query:    80 AMLTSLGFTAEEGNILRGYCDASSAPSPG 108
              M+  LGFTA+EG++L+GYCD + + + G
Sbjct:   100 TMIGVLGFTAQEGDMLQGYCDGNDSDNNG 128

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IDA

GO:0005622 "intracellular" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0048240 "sperm capacitation" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:2176080 EC1.5 "AT5G64720" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 40/97 (41%), Positives = 55/97 (56%)

Query:    31 SGGLTECWNTLMEMKSCSNEIFIFFLNS--------QADIGPDCYRAIDIITRNCWPAML 82
             +G L +CWN  +E+KSC++EI  FFL+         +  I  DC  AI ++ ++CW  M 
Sbjct:    47 AGNLMDCWNAGLELKSCTDEIVKFFLSQTGTSEPPVKGGIDKDCCGAIGLVVKDCWSVMF 106

Query:    83 TSLGFTAEEGNILRGYCD-------ASSAPSPGGLAL 112
             TSLG T  EGN LR YC+        S +P+P  LAL
Sbjct:   107 TSLGLTTMEGNNLREYCEFQAEKSELSPSPAPETLAL 143

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005576 "extracellular region" evidence=IDA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IGI

GO:0031982 "vesicle" evidence=IDA

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IMP

GO:2000008 "regulation of protein localization to cell surface" evidence=IMP

TAIR|locus:504955577 AT3G48675 "AT3G48675" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 22/75 (29%), Positives = 35/75 (46%)

Query:    34 LTECWNTLMEMKSCSNEIFIFFLNSQ-ADIGPDCYRAIDIITRNCWPAMLTSLGFTAEEG 92
             + +CW++L  ++ C  EI+    + Q A I   C +    I  NCWP M     F     
Sbjct:    44 IIKCWSSLFNVQGCVQEIYKSIFSGQFASIEAPCCKTFSAIDTNCWPHMFPLNPFFPP-- 101

Query:    93 NILRGYCDA-SSAPS 106
              IL+  C+  ++ PS
Sbjct:   102 -ILKNNCERIATTPS 115

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:4010713622 AT2G14378 [Arabidopsis thaliana (taxid:3702)]

 Score = 86 (35.3 bits), Expect = 0.00072, P = 0.00072
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query:    36 ECWNTLMEMKSCSNEIF-IFFLNSQADIGPDCYRAIDIITRNCWPAM 81
             +CW++L   + C  E+    F     D+G  C +A   +  NCWP M
Sbjct:    49 KCWSSLFNTQGCVFELLKSVFSGRFGDVGVACCKAFSTVDANCWPHM 95

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:504954909 AT5G54062 "AT5G54062" [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 0.00099, P = 0.00099
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query:    34 LTECWNTLMEMKSCSNEIFIFFLNSQAD-IGPDCYRAIDIITRNCWPAM 81
             L +CW++L+ +  C+ EIF   L  + + +G  C +A   +   CWP M
Sbjct:    45 LAKCWSSLLNIHGCNIEIFKSVLTGKFENVGSTCCKAFTEVDAKCWPKM 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      131       131   0.00091  102 3  11 22  0.38    31
                                                     29  0.42    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  134 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.94u 0.10s 12.04t   Elapsed:  00:00:01
  Total cpu time:  11.94u 0.10s 12.04t   Elapsed:  00:00:01
  Start:  Sat May 11 01:56:27 2013   End:  Sat May 11 01:56:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9T039	EC14_ARATH	No assigned EC number	0.5934	0.6412	0.6614	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
pfam05617	67	pfam05617, Prolamin_like, Prolamin-like	5e-14

>gnl|CDD|218659 pfam05617, Prolamin_like, Prolamin-like

 Score = 61.8 bits (150), Expect = 5e-14
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 36  ECWNTLMEM-KSCSNEIFIFFLNSQADIGPDCYRAIDIITRNCWPAMLTSLGFTAE-EGN 93
           +CW+        C +EIF     ++ ++GPDC +AI  I  +CWPA+             
Sbjct: 1   KCWSACAVKIPGCVDEIFASIFGNKGNLGPDCCQAILKIGDDCWPALFKMFPSLPFFPPK 60

Query: 94  ILRGYCD 100
           +L+ YC 
Sbjct: 61  LLKNYCS 67

Both DUF784 and DUF1278 members are found to be expressed in the plant embryo sac and are regulated by the Myb98 transcription factor. Computational analysis has revealed that they are homologous to the plant prolamin superfamily (Protease inhibitor-seed storage-LTP family, pfam00234). In contrast to the typical prolamin members that have eight conserved Cys residues forming four pairs of disulfide bonds, both DUF784 and DUF1278 domains only contain six conserved Cys residues that may form three pairs of disulfide bonds. These two domains may have potential functions in lipid transfer or protection during plant embryo sac development and reproduction. This family has been merged with the DUF1278 family. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
PLN00213	118	predicted protein; Provisional	99.95
PF05617	70	Prolamin_like: Prolamin-like; InterPro: IPR008502	99.81

>PLN00213 predicted protein; Provisional

Probab=99.95  E-value=2.2e-29  Score=188.45  Aligned_cols=74  Identities=23%  Similarity=0.530  Sum_probs=68.9

Q ss_pred             CCchhhhhhhccCcchHHHHHHHHHhCccc-cCccchhHHHHhhcCcccchhcCCCCCcchhhhhhhccccCCCCCCCcc
Q 041717           32 GGLTECWNTLMEMKSCSNEIFIFFLNSQAD-IGPDCYRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGGL  110 (131)
Q Consensus        32 ~d~~kCWsSL~~v~gC~~EI~~sflnG~~~-IGp~CCkAI~~I~~~CWP~MFps~PFtp~e~~~LKg~Cs~~~~~~P~~~  110 (131)
                      .|+.||||||++++||+.||++++++||++ ||++|||||++++ +|||+| |++||||+   +||++|++++..+|+++
T Consensus        43 pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~~  117 (118)
T PLN00213         43 PDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPIP  117 (118)
T ss_pred             ccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCCC
Confidence            499999999999999999999999999997 9999999999966 999995 99999998   99999999987776653

>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana

Probab=99.81  E-value=8.7e-21  Score=125.95  Aligned_cols=64  Identities=31%  Similarity=0.736  Sum_probs=56.1

Q ss_pred             hhhhhhccCcchHHHHHHHHHhCcc-ccCccchhHHHHhhcCcccc---hhcCCCCCcc--hhhhhhhccc
Q 041717           36 ECWNTLMEMKSCSNEIFIFFLNSQA-DIGPDCYRAIDIITRNCWPA---MLTSLGFTAE--EGNILRGYCD  100 (131)
Q Consensus        36 kCWsSL~~v~gC~~EI~~sflnG~~-~IGp~CCkAI~~I~~~CWP~---MFps~PFtp~--e~~~LKg~Cs  100 (131)
                      |||+++.++++|..||+.+|++|+. .||++||+||+.++++|||.   ||++.|++++  + +.|+++|+
T Consensus         1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~   70 (70)
T PF05617_consen    1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS   70 (70)
T ss_pred             ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence            6999999999999999999999995 49999999999999999999   5555555554  3 49999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00