Citrus Sinensis ID: 041736

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500
Protein Sequence
MRPKINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHcccccccHHHccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccEEEEEcccccccccccccccccccccEEccccccccccccHHHHccccccEEEccccEEcccccccccccccccEEEcccccccccccHHHHcccccEEEccccEEEEcccccccccccccEEEccccccccccHHHHHHHHHccHHccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccccccccEEEccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccccHHHccccHHHHHHHHHHHcccccccccHcccHHHHccccccccccccccccccccccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEEccccccccccHHHccccccEEEEccccccccccHHHcccccEEEEEccccccccccHHHHcHHHHHcEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccEEEEcccccccccccccccccccHHHHHHEcccccccccccHHHHcccccccEEEcccccccccccHHHccHHHHHHHHHHHccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MRPKINIILPLFAILTLITLVTAeklsvsnngvFLEAEAAFIKQRQLLYYRnryggrgefgrippsfkfenSRIRSAYIALQAWKKaiisdpwnltsnwvgcyvCNYTGVFCAqaldnhsirtvagidlnhgdiasylpEELGLLADIALFHvntnrfcgtlprsFNKLKLLFELDlsnnrfagkfpyvvlglpklkfldLRYNEFegkipkalfdkdldavfinnnrfsfelpdnignspVSVLVLANnkfhgclplsfgnmsRTLNEVILtnnglhsclpeeigllknVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNmlsgtvpdsvcslpnlrnfsfdynfftgespvcldlqgfddkrnclrdkprqrstLQCRMFLSRLVYcntlkcqsspqppvyslpppvrpppppppvpvslpppptycihsprppplfsptptpilpppppnlrlqplpppspipcekqpppspppygplpsitaipypypppplfy
Flexible Loop (DISEMBL)
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
Low Complexity Region (SEG)
MRPKINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQsspqppvyslpppvrpppppppvpvslppppTYCIHSprppplfsptptpilpppppnlrlqplpppspipcekqpppspppygplpsITAIpypyppppLFY
Disordered region (IsUnstruct)
****INIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC********************************************************************************************************
Disordered Region (DISOPRED)
******I*LPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYC*********************************************************************************PPP*PPPYGPLPSITAI*Y*Y*******
Disordered Region (DISEMBL)
MRPKINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY
Disordered Region (DISPRO)
***KINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPKINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	500	2.2.26 [Sep-21-2011]
Q9LHF1	494	Leucine-rich repeat exten	yes	no	0.76	0.769	0.657	1e-147
Q9SN46	857	Leucine-rich repeat exten	no	no	0.798	0.465	0.616	1e-141
Q9T0K5	760	Leucine-rich repeat exten	no	no	0.73	0.480	0.607	1e-136
Q4PSE6	433	Leucine-rich repeat exten	no	no	0.692	0.799	0.613	1e-129
O48809	786	Leucine-rich repeat exten	no	no	0.702	0.446	0.579	1e-119
O81765	699	Pollen-specific leucine-r	no	no	0.886	0.633	0.462	1e-117
Q9XIB6	847	Pollen-specific leucine-r	no	no	0.672	0.396	0.560	1e-117
O65375	744	Leucine-rich repeat exten	no	no	0.712	0.478	0.552	1e-115
Q9LJ64	956	Pollen-specific leucine-r	no	no	0.714	0.373	0.514	1e-114
Q9LUI1	470	Leucine-rich repeat exten	no	no	0.652	0.693	0.605	1e-112

>sp|Q9LHF1|LRX4_ARATH Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=1 SV=1

 Score =  523 bits (1347), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 251/382 (65%), Positives = 302/382 (79%), Gaps = 2/382 (0%)

Query: 23  AEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQ 82
           +  LS+S+N    + E  FI++RQLLYYR+ +G RGE   + PS  FEN R+RSAYIALQ
Sbjct: 23  SHSLSISSNAPLSDTEVRFIQRRQLLYYRDEFGDRGENVTVDPSLIFENPRLRSAYIALQ 82

Query: 83  AWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEEL 142
           AWK+AI+SDP N+T NW+G  VCNYTGVFC++ALDN  IRTVAGIDLNH DIA YLPEEL
Sbjct: 83  AWKQAILSDPNNITVNWIGSNVCNYTGVFCSKALDNRKIRTVAGIDLNHADIAGYLPEEL 142

Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
           GLL D+ALFHVN+NRFCGT+P  F +LKLLFELDLSNNRFAGKFP VVL LP LKFLDLR
Sbjct: 143 GLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLR 202

Query: 203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGN 262
           +NEFEG +PK LF K+LDA+FIN+NRF FELP+N G+SPVSV+VLANN FHGC+P S   
Sbjct: 203 FNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVE 262

Query: 263 MSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322
           M + LNE+I  NNGL+SCLP +IG LKNVTVFDVS+N+L+G LP+++  M  ++QLNVAH
Sbjct: 263 M-KNLNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAH 321

Query: 323 NMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCR 382
           N+LSG +P S+C LP L NF++ YNFFTGE+PVCL L  FDD+RNCL  +P QRS+ QC 
Sbjct: 322 NLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCS 381

Query: 383 MFLSR-LVYCNTLKCQSSPQPP 403
            FLSR  V C +  C  S   P
Sbjct: 382 AFLSRPSVDCGSFGCGRSVVKP 403

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana GN=LRX5 PE=2 SV=2

 Score =  503 bits (1296), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/402 (61%), Positives = 301/402 (74%), Gaps = 3/402 (0%)

Query: 1   MRPKINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEF 60
           M    ++I  L  I    T ++   LS++ NG   + E   I QRQLLY+R+ +G RGE 
Sbjct: 6   MMKNTSLIFVLLFITFFFTSISY-SLSLTFNGDLSDNEVRLITQRQLLYFRDEFGDRGEN 64

Query: 61  GRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHS 120
             + PS  FEN R+R+AYIALQAWK+AI+SDP N T+NW+G  VC+YTGV+CA ALDN  
Sbjct: 65  VDVDPSLVFENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRR 124

Query: 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180
           IRTVAGIDLNH DIA YLP+ELGLL D+ALFH+N+NRFCGT+P  FN+LKLLFELDLSNN
Sbjct: 125 IRTVAGIDLNHADIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNN 184

Query: 181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNS 240
           RFAG FP VVL LP LKFLDLR+NEFEG +P+ LF KDLDA+FIN+NRF FELPDN+G+S
Sbjct: 185 RFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDS 244

Query: 241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK 300
           PVSV+V+ANN FHGC+P S G+M R L E+I   NG +SCLP +IG LKNVTVFD S+N+
Sbjct: 245 PVSVIVVANNHFHGCIPTSLGDM-RNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNE 303

Query: 301 LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
           L+G LP +I  M S++QLNVAHN  SG +P ++C LP L NF+F YNFFTGE PVCL L 
Sbjct: 304 LVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLGLP 363

Query: 361 GFDDKRNCLRDKPRQRSTLQCRMFLSR-LVYCNTLKCQSSPQ 401
           GFDD+RNCL  +P QRS  QC  F S   V C +  C  S +
Sbjct: 364 GFDDRRNCLPARPAQRSPGQCAAFSSLPPVDCGSFGCGRSTR 405

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1

 Score =  486 bits (1252), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/405 (60%), Positives = 294/405 (72%), Gaps = 40/405 (9%)

Query: 29  SNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAI 88
           S+ GV  + E   I++RQLL     +  R     + PS  FEN R+R+AYIALQAWK+AI
Sbjct: 25  SDGGVLSDNEVRHIQRRQLL----EFAERSVKITVDPSLNFENPRLRNAYIALQAWKQAI 80

Query: 89  ISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADI 148
           +SDP N TSNW+G  VCNYTGVFC+ ALDN  IRTVAGIDLNH DIA YLPEELGLL+D+
Sbjct: 81  LSDPNNFTSNWIGSNVCNYTGVFCSPALDNRKIRTVAGIDLNHADIAGYLPEELGLLSDL 140

Query: 149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEG 208
           ALFHVN+NRFCGT+P  FN+LKLLFELDLSNNRFAGKFP VVL LP LKFLDLR+NEFEG
Sbjct: 141 ALFHVNSNRFCGTVPHRFNRLKLLFELDLSNNRFAGKFPTVVLQLPSLKFLDLRFNEFEG 200

Query: 209 KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLN 268
            +PK LF KDLDA+FIN+NRF FELP+N G+SPVSV+VLANN+FHGC+P S   M + LN
Sbjct: 201 TVPKELFSKDLDAIFINHNRFRFELPENFGDSPVSVIVLANNRFHGCVPSSLVEM-KNLN 259

Query: 269 EVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328
           E+I  NNGL+SCLP +IG LKNVTVFDVS+N+L+G LP+++ EM S++QLNVAHNMLSG 
Sbjct: 260 EIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGK 319

Query: 329 VPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRL 388
           +P S+C LP L NF++ YNFFTGE+PVCL L  FDD+RNCL  +P QRS  QC+ FLSR 
Sbjct: 320 IPASICQLPKLENFTYSYNFFTGEAPVCLRLPEFDDRRNCLPGRPAQRSPGQCKAFLSRP 379

Query: 389 -VYCNTLKCQ----------------------------------S 398
            V C +  C                                   +
Sbjct: 380 PVNCGSFSCGRSVSPRPPVVTPLPPPSLPSPPPPAPIFSTPPTLT 424

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSE6|LRX7_ARATH Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana GN=LRX7 PE=2 SV=1

 Score =  461 bits (1186), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 216/352 (61%), Positives = 280/352 (79%), Gaps = 6/352 (1%)

Query: 45  RQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYV 104
           RQLLY R+      +   IPP   FEN R+  AY+ALQAWK+A+ISDPWNLT+NW G  V
Sbjct: 28  RQLLYTRD------DPITIPPYLIFENVRLERAYVALQAWKRAMISDPWNLTTNWFGSRV 81

Query: 105 CNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPR 164
           C+Y GV C+++LD+  ++TV+G+DLN GDIA +LPEELGLL DIALFHVN+NRFCGTLP 
Sbjct: 82  CDYNGVVCSESLDDPLVKTVSGVDLNQGDIAGHLPEELGLLTDIALFHVNSNRFCGTLPV 141

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
            F++L LLFELDLSNNRFAGKFP VV+GLPKLK+LDLRYNEFEG++P++LFDKDLDA+F+
Sbjct: 142 GFSQLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFL 201

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
           N+NRF  ++P N+GNSPVSVLVLA+N+F GC+P SFG M +TLNE+IL +NGL SC+P +
Sbjct: 202 NSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMDNGLQSCIPND 261

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +GLL+NVTV D+SYN L+GELP ++ +M +L+ LNV  NMLSG +PD +CSL  LR+F +
Sbjct: 262 MGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFRY 321

Query: 345 DYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC 396
             N+FTGE   C  L+ ++   NC +D   QRS ++C+MFLS+ V C++ KC
Sbjct: 322 GSNYFTGEPATCRYLENYNYTMNCFKDVRDQRSMMECKMFLSKPVDCDSFKC 373

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|O48809|LRX2_ARATH Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=LRX2 PE=1 SV=1

 Score =  427 bits (1099), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/357 (57%), Positives = 261/357 (73%), Gaps = 6/357 (1%)

Query: 62  RIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSI 121
           ++ PS KFEN  +R AYIALQ+WK+AI SDP+N T+NW G  VC+Y G+FCA +  +   
Sbjct: 41  KVDPSLKFENPSLRQAYIALQSWKQAIFSDPFNFTANWNGSDVCSYNGIFCAPSPSSPKT 100

Query: 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR 181
           R VAGIDLNH D+A YLP ELGLL D+ALFH+N+NRFCG +P +F  +KLLFELDLSNNR
Sbjct: 101 RVVAGIDLNHADMAGYLPRELGLLTDLALFHLNSNRFCGEVPLTFKHMKLLFELDLSNNR 160

Query: 182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP 241
           F GKFP VVL LP LKFLDLRYNEFEG IP  LFDK+LDA+F+N+NRF F +P+N+GNSP
Sbjct: 161 FVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHNRFMFGIPENMGNSP 220

Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
           VS LVLA+N   GC+P S G M +TLNE+IL+N+ L  CLP +IG LKNVTVFD+S+N+L
Sbjct: 221 VSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRL 280

Query: 302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQG 361
            G LP +I  M SL+QLNVA+N  +G +P S+C L NL NF++  NFFTG++P C+ L G
Sbjct: 281 SGPLPSSIGNMKSLEQLNVANNRFTGVIPSSICQLSNLENFTYSSNFFTGDAPRCVALLG 340

Query: 362 ----FDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQS--SPQPPVYSLPPPVR 412
                +   NC+  K  QRS+ +C    SR V C+   C +  SP PP + + P VR
Sbjct: 341 DNVVVNGSMNCIDGKEDQRSSKECSSPASRSVDCSKFGCNNFFSPPPPSFKMSPTVR 397

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|O81765|PLRX4_ARATH Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=PEX4 PE=2 SV=1

 Score =  424 bits (1089), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/471 (46%), Positives = 294/471 (62%), Gaps = 28/471 (5%)

Query: 33  VFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFE--------NSRIRSAYIALQAW 84
              + EAAFI QRQLL   +        G +P   ++E        N+R++ AYIALQAW
Sbjct: 44  ALTDTEAAFIVQRQLLTLPDN-------GELPDDIEYEVDLKATFANTRLKRAYIALQAW 96

Query: 85  KKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGL 144
           KKAI SDP+N T NW G +VC YTGV CA ALD+  +  VAG+DLN  DIA +LP ELGL
Sbjct: 97  KKAIFSDPFNTTGNWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGL 156

Query: 145 LADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN 204
           + D+A+FH+N+NRFCG +P+SF KLKL+ E D+SNNRF G FP VVL  P +K+ DLR+N
Sbjct: 157 MTDVAMFHLNSNRFCGIIPKSFEKLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFN 216

Query: 205 EFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMS 264
           +FEG++P  LF K+LDA+F+N+NRF+  +P+++G SP SV+  ANNKF GC+P S GNM 
Sbjct: 217 DFEGQVPPELFKKELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNM- 275

Query: 265 RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNM 324
           + LNE++  +N L  C P EIG L NVTVFD S N  +G LP +   +TS+++++++ N 
Sbjct: 276 KNLNEIVFMDNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNK 335

Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL-----DLQGFDDKRNCLRDKPRQRSTL 379
           L+G VP ++C LPNL N ++ YN+F+G+   C+          DD RNCL  +P QRS  
Sbjct: 336 LTGLVPHNICQLPNLVNLTYSYNYFSGQGGSCVPGGSRKEIALDDTRNCLASRPEQRSAQ 395

Query: 380 QCRMFLSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPP-PTYCIHSPRP- 437
           +C + ++R V C+  KC      P  S P PV  P P P  PV  P P PT  +  P P 
Sbjct: 396 ECAVVINRPVDCSKDKCAGGSSTP--SKPSPVHKPTPVPTTPVHKPTPVPTTPVQKPSPV 453

Query: 438 --PPLFSPTPTPILPPPPPN-LRLQPLPPPSPIPCEKQPPPSPPPYGPLPS 485
              P+  P+P P  P   P+ +   P+  PSP+P      P PP   P P 
Sbjct: 454 PTTPVQKPSPVPTTPVHEPSPVLATPVDKPSPVPSRPVQKPQPPKESPQPD 504

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIB6|PLRX2_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1

 Score =  421 bits (1081), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 191/341 (56%), Positives = 246/341 (72%), Gaps = 5/341 (1%)

Query: 60  FGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNH 119
             ++ P+ KFEN R++ AYIALQAWKKAI SDP+  T+NWVG  VC+Y GV+CA ALD+ 
Sbjct: 45  INKVDPNLKFENDRLKRAYIALQAWKKAIYSDPFKTTANWVGSDVCSYNGVYCAPALDDD 104

Query: 120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN 179
           S+  VAG+DLNH DIA +LP ELGL+ D+ALFH+N+NRFCG +P+S +KL L++E D+SN
Sbjct: 105 SLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSN 164

Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGN 239
           NRF G+FP V L  P LKFLDLRYNEFEG +P  +FDKDLDA+F+NNNRF   +P  IG 
Sbjct: 165 NRFVGQFPEVSLSWPSLKFLDLRYNEFEGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGK 224

Query: 240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYN 299
           S  SV+  ANNKF GC+P S GNM + LNE++ T N L  C P EIGLL NVTVFD S N
Sbjct: 225 SKASVVTFANNKFSGCIPKSIGNM-KNLNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKN 283

Query: 300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL-- 357
             +G LP T++ + S++QL+++HN L+G V D  C LPNL +F F YNFF GE+  C+  
Sbjct: 284 GFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGEAESCVPG 343

Query: 358 --DLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC 396
             + + FDD  NCL+++P Q+   QC   +SR V C+  KC
Sbjct: 344 RNNGKQFDDTNNCLQNRPSQKPAKQCLPVVSRPVDCSKDKC 384

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|O65375|LRX1_ARATH Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1

 Score =  416 bits (1069), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 200/362 (55%), Positives = 259/362 (71%), Gaps = 6/362 (1%)

Query: 62  RIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSI 121
           ++    KFEN ++R AYIALQ+WKKAI SDP+N T+NW G  VC+Y G++CA +      
Sbjct: 39  KVDKRLKFENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKT 98

Query: 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR 181
           R VAGIDLNH D+A YL  ELGLL+D+ALFH+N+NRFCG +P +FN++KLL+ELDLSNNR
Sbjct: 99  RVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNR 158

Query: 182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP 241
           F GKFP VVL LP LKFLDLRYNEFEGKIP  LFD++LDA+F+N+NRF F +P N+GNSP
Sbjct: 159 FVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSP 218

Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
           VS LVLA+N   GC+P S G M +TLNE+IL+N+ L  CLP +IG LK VTVFD++ N+L
Sbjct: 219 VSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRL 278

Query: 302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC----L 357
            G LP ++  M SL++L+VA+N  +G +P S+C L NL NF++  N+F+G  P+C    L
Sbjct: 279 QGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLL 338

Query: 358 DLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQS--SPQPPVYSLPPPVRPPP 415
                +   NC+    RQRS  QC   L+R V C+   C +  SP PP + + P VR  P
Sbjct: 339 ADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGCYNIFSPPPPTFKMSPEVRTLP 398

Query: 416 PP 417
           PP
Sbjct: 399 PP 400

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ64|PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1

 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/377 (51%), Positives = 255/377 (67%), Gaps = 20/377 (5%)

Query: 32  GVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPS--------FKFENSRIRSAYIALQA 83
               + EA+F+ +RQLL          E G +P           KF N+R++ AYIALQA
Sbjct: 29  AALTDEEASFLTRRQLL-------ALSENGDLPDDIEYEVDLDLKFANNRLKRAYIALQA 81

Query: 84  WKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELG 143
           WKKA  SDP+N  +NWVG  VC+Y GVFCA ALD+ S+  VAGIDLNH DIA YLP ELG
Sbjct: 82  WKKAFYSDPFNTAANWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHADIAGYLPPELG 141

Query: 144 LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY 203
           LL D+ALFHVN+NRFCG +P+S +KL L++E D+SNNRF G FP V L  P LKFLD+RY
Sbjct: 142 LLTDVALFHVNSNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRY 201

Query: 204 NEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNM 263
           N+FEGK+P  +FDKDLDA+F+NNNRF   +P+ IG S  SV+  A+NKF GC+P + G M
Sbjct: 202 NDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQM 261

Query: 264 SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHN 323
            + LNE++   N L  CLP EIG L NVTVFD S N  +G LP T++ + +++Q++ ++N
Sbjct: 262 -KNLNEIVFIGNNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYN 320

Query: 324 MLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL----DLQGFDDKRNCLRDKPRQRSTL 379
             +G V D++C LP L NF+F YNFF GE+  C+      + FDD  NCL+++P Q+S  
Sbjct: 321 KFTGFVTDNICKLPKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCLQNRPNQKSAK 380

Query: 380 QCRMFLSRLVYCNTLKC 396
           +C   +SR V C+  KC
Sbjct: 381 ECLPVVSRPVDCSKDKC 397

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUI1|LRX6_ARATH Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1

 Score =  406 bits (1043), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/327 (60%), Positives = 244/327 (74%), Gaps = 1/327 (0%)

Query: 71  NSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLN 130
           N R+  A+ ALQAWK  I SDP   TSNW G  VCNYTGVFCA ALDN  + TVAGIDLN
Sbjct: 48  NPRLLKAFTALQAWKFTITSDPNGFTSNWCGPNVCNYTGVFCAPALDNPYVLTVAGIDLN 107

Query: 131 HGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVV 190
           H +IA YLP ELGLL D+ALFH+N+NRF G LP++   L LL ELD+SNN+ +G+FP V+
Sbjct: 108 HANIAGYLPLELGLLTDLALFHINSNRFQGQLPKTLKCLHLLHELDVSNNKLSGEFPSVI 167

Query: 191 LGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANN 250
             LP LKFLD+R+NEF+G +P  LFD +LDA+FIN+N+F F LP NIGNSPVSVLVLANN
Sbjct: 168 FSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQFRLPRNIGNSPVSVLVLANN 227

Query: 251 KFHG-CLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTI 309
              G C+P SF  M +TL+E+I+TN+ L  CL  EIGLL  +TVFDVSYN L+G LP+TI
Sbjct: 228 DLQGSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNLVGSLPETI 287

Query: 310 AEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCL 369
            +M SL+QLN+AHN  SG +P+S+C LP L NF++ YNFF+GE P CL LQ FDD+RNCL
Sbjct: 288 GDMKSLEQLNIAHNKFSGYIPESICRLPRLENFTYSYNFFSGEPPACLRLQEFDDRRNCL 347

Query: 370 RDKPRQRSTLQCRMFLSRLVYCNTLKC 396
             +P QRS  +C+ F S  + C +  C
Sbjct: 348 PSRPMQRSLAECKSFSSYPIDCASFGC 374

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
359484368	752	PREDICTED: uncharacterized protein LOC10	0.782	0.519	0.675	1e-154
224143492	509	predicted protein [Populus trichocarpa]	0.782	0.768	0.662	1e-150
449533433	451	PREDICTED: leucine-rich repeat extensin-	0.72	0.798	0.706	1e-150
449443321	608	PREDICTED: leucine-rich repeat extensin-	0.724	0.595	0.705	1e-149
449461987	740	PREDICTED: leucine-rich repeat extensin-	0.738	0.498	0.686	1e-147
224089084	403	predicted protein [Populus trichocarpa]	0.694	0.861	0.731	1e-147
449526636	785	PREDICTED: leucine-rich repeat extensin-	0.73	0.464	0.693	1e-147
224117332	420	predicted protein [Populus trichocarpa]	0.71	0.845	0.702	1e-146
15230120	494	leucine-rich repeat extensin-like protei	0.76	0.769	0.657	1e-146
224141819	496	predicted protein [Populus trichocarpa]	0.794	0.800	0.67	1e-145

>gi|359484368|ref|XP_002281292.2| PREDICTED: uncharacterized protein LOC100259389 [Vitis vinifera]

 Score =  550 bits (1418), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 264/391 (67%), Positives = 312/391 (79%)

Query: 7   IILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPS 66
           ++L     L  + L +AE++S+S++G   +AE  +IK+RQLLYYR+ +G RGE   + PS
Sbjct: 11  VLLHSLLFLGCLALCSAEQISISSHGHLTDAEVMYIKRRQLLYYRDEFGDRGEDVTVDPS 70

Query: 67  FKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAG 126
             FEN R R+AYIALQAWK+AI+SDP NLT NWVG  VCNYTGV+CAQA DN SIRTVAG
Sbjct: 71  LVFENPRQRNAYIALQAWKQAILSDPLNLTLNWVGSNVCNYTGVYCAQAPDNSSIRTVAG 130

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           IDLNHGDIA YLPEELGLL D+ALFH+N+NRFCGT+P  F KLK+LFELDLSNNRFAGKF
Sbjct: 131 IDLNHGDIAGYLPEELGLLTDLALFHINSNRFCGTVPHKFAKLKILFELDLSNNRFAGKF 190

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLV 246
           P VVL LP LKFLDLR+NEFEG +PK LFDKDLDA+FIN+NRF+F+LPDN GNSPVSV+V
Sbjct: 191 PEVVLHLPTLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFAFDLPDNFGNSPVSVIV 250

Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP 306
           +ANNK HGC+P S GNM+ TLNE+IL NN   SCLP EIGLLKN+TV DVSYN L+G LP
Sbjct: 251 VANNKLHGCVPASLGNMADTLNEIILMNNQFRSCLPVEIGLLKNLTVLDVSYNGLLGPLP 310

Query: 307 DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKR 366
             I  M  L+QLNVAHNMLSG++P S+C LPNL NF+F YNFFTGE P CL L  F+D+R
Sbjct: 311 KEIGGMVELEQLNVAHNMLSGSIPASICKLPNLENFTFSYNFFTGEPPACLGLADFEDRR 370

Query: 367 NCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQ 397
           NCL  +P QRS  QC  FLSR V C++ +C 
Sbjct: 371 NCLPGRPEQRSAGQCNSFLSRPVDCSSFRCS 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143492|ref|XP_002324974.1| predicted protein [Populus trichocarpa] gi|222866408|gb|EEF03539.1| predicted protein [Populus trichocarpa]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 261/394 (66%), Positives = 316/394 (80%), Gaps = 3/394 (0%)

Query: 4   KINIILPLFAILTLITLVTAEKL-SVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGR 62
            +++++ LF + T++ L  A++  ++S+ G   +A+A +IK+RQLLYY++ +G RGE   
Sbjct: 10  HLSLLIALF-LGTVVCLSAAKQAPTISSYGGLSDADAMYIKKRQLLYYKDEFGDRGERVT 68

Query: 63  IPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIR 122
           + PS  F N R+R+AYIALQAWK+AI SDP NLT+NWVG  VCNY GVFCA A DN +IR
Sbjct: 69  VDPSLVFPNPRLRNAYIALQAWKQAIFSDPLNLTANWVGSQVCNYEGVFCAPAPDNKTIR 128

Query: 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF 182
           TVAGIDLNHGDIA YLPEELGLL DIALFH+N+NRFCGT+PR F  ++LLFELDLSNNRF
Sbjct: 129 TVAGIDLNHGDIAGYLPEELGLLVDIALFHINSNRFCGTVPRKFKDMRLLFELDLSNNRF 188

Query: 183 AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPV 242
           AGKFP VVL LP LKFLDLR+NEFEG +PK LFDKDLDA+FIN+NRF F+LP+N+GNSPV
Sbjct: 189 AGKFPQVVLKLPSLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPENLGNSPV 248

Query: 243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLM 302
           SV+VLANNKFHGC+P S GNMS  LNE+IL NNG  SC+P EIGLLK++TV DVS+N+LM
Sbjct: 249 SVIVLANNKFHGCVPSSLGNMS-NLNEIILMNNGFRSCMPAEIGLLKDLTVLDVSFNQLM 307

Query: 303 GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGF 362
           G LPD    M SL+QLNVAHNMLSG +P S+C LPNL NF+F YNFFTGE PVCL L  F
Sbjct: 308 GPLPDAFGGMASLEQLNVAHNMLSGKIPASICKLPNLDNFTFSYNFFTGEPPVCLSLPDF 367

Query: 363 DDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC 396
            D+RNCL  +P QRS  QC  FLSR V C++ +C
Sbjct: 368 SDRRNCLPARPLQRSAAQCNAFLSRPVDCSSFRC 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449533433|ref|XP_004173680.1| PREDICTED: leucine-rich repeat extensin-like protein 5-like, partial [Cucumis sativus]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/361 (70%), Positives = 300/361 (83%), Gaps = 1/361 (0%)

Query: 36  EAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNL 95
           +AEA +I+QRQLLYYR+ +G RGE   + P   FEN RIR+AYIALQAWK+AI+SDP NL
Sbjct: 49  DAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPLNL 108

Query: 96  TSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNT 155
           T NWVG  VC+Y GVFCA A DN SIRTVAGIDLNHGDIA YLPEELGLL D+ALFH+N+
Sbjct: 109 TKNWVGSDVCHYKGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINS 168

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           NRFCGT+P  F  LKLLFELDLSNNRFAGKFP VVL LP+LKFLDLR+NEFEG +PK LF
Sbjct: 169 NRFCGTVPHKFKNLKLLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELF 228

Query: 216 DKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275
           DKDLDA+FIN+NRF F+LP+N GNSPVSV+VLANNKFHGC+P S GNM+R LNE+IL NN
Sbjct: 229 DKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTR-LNEIILMNN 287

Query: 276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS 335
           G  SCLP EIG LKN+TVFDVS+N+  G+LP+TI  M SL+QLNVAHN LSG +PDS+C 
Sbjct: 288 GFRSCLPSEIGFLKNLTVFDVSHNEFFGKLPETIGGMVSLEQLNVAHNFLSGKIPDSICK 347

Query: 336 LPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLK 395
           LPNL+NF++ YNFFTGE+P CL L  FDD+RNC+ ++P QRS  QC+ FLS+ V C++  
Sbjct: 348 LPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPERPVQRSERQCKSFLSKPVDCSSFG 407

Query: 396 C 396
           C
Sbjct: 408 C 408

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443321|ref|XP_004139428.1| PREDICTED: leucine-rich repeat extensin-like protein 4-like [Cucumis sativus]

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 256/363 (70%), Positives = 301/363 (82%), Gaps = 1/363 (0%)

Query: 36  EAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNL 95
           +AEA +I+QRQLLYYR+ +G RGE   + P   FEN RIR+AYIALQAWK+AI+SDP NL
Sbjct: 49  DAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPLNL 108

Query: 96  TSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNT 155
           T NWVG  VC+Y GVFCA A DN SIRTVAGIDLNHGDIA YLPEELGLL D+ALFH+N+
Sbjct: 109 TKNWVGSDVCHYKGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINS 168

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           NRFCGT+P  F  LKLLFELDLSNNRFAGKFP VVL LP+LKFLDLR+NEFEG +PK LF
Sbjct: 169 NRFCGTVPHKFKNLKLLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELF 228

Query: 216 DKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275
           DKDLDA+FIN+NRF F+LP+N GNSPVSV+VLANNKFHGC+P S GNM+R LNE+IL NN
Sbjct: 229 DKDLDAIFINHNRFRFDLPENFGNSPVSVIVLANNKFHGCVPGSIGNMTR-LNEIILMNN 287

Query: 276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS 335
           G  SCLP EIG LKN+TVFDVS+N+  G+LP+TI  M SL+QLNVAHN LSG +PDS+C 
Sbjct: 288 GFRSCLPSEIGFLKNLTVFDVSHNEFFGKLPETIGGMVSLEQLNVAHNFLSGKIPDSICK 347

Query: 336 LPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLK 395
           LPNL+NF++ YNFFTGE+P CL L  FDD+RNC+ ++P QRS  QC+ FLS+ V C++  
Sbjct: 348 LPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPERPVQRSERQCKSFLSKPVDCSSFG 407

Query: 396 CQS 398
           C S
Sbjct: 408 CPS 410

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461987|ref|XP_004148723.1| PREDICTED: leucine-rich repeat extensin-like protein 4-like, partial [Cucumis sativus]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/370 (68%), Positives = 300/370 (81%), Gaps = 1/370 (0%)

Query: 27  SVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKK 86
           +++ +G   +AEA FI+ RQLLYYR+ +G RGE   + PS  FEN RIR+AYIALQAWK 
Sbjct: 9   TITFHGSLSDAEALFIRHRQLLYYRDEFGDRGELVTVDPSLVFENDRIRNAYIALQAWKL 68

Query: 87  AIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLA 146
           AI+SDP N T+NWVG  VCNY GVFCA +LDN  IRTVAGIDLNHGDIA YLPEELGLL 
Sbjct: 69  AILSDPLNQTANWVGSNVCNYFGVFCAPSLDNPKIRTVAGIDLNHGDIAGYLPEELGLLT 128

Query: 147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF 206
           D+ALFH+N+NRFCGTLP  F++LKLL+ELDLSNNRFAGKFP VVL LP LKFLDLR+NEF
Sbjct: 129 DLALFHINSNRFCGTLPHRFDRLKLLYELDLSNNRFAGKFPDVVLKLPTLKFLDLRFNEF 188

Query: 207 EGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRT 266
           EG +P+ LFDKDLDA+FIN+NRF FELPDN GNSPVSV+VLANNKFHGCLP S GNM+R 
Sbjct: 189 EGNVPRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCLPSSLGNMTR- 247

Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
           LNE+I+ NNGL+SCLP EIG LKN+TVFDVS N+L+G LP+T   + SL+QLNVA+N LS
Sbjct: 248 LNEIIMMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPETFGGLVSLEQLNVANNFLS 307

Query: 327 GTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLS 386
           G +P+++C LP L+NF+F  NFF+GE P CL +  F D+RNCL  +  QRST QC  FLS
Sbjct: 308 GKIPENICELPKLQNFTFSNNFFSGEPPACLRVPDFSDRRNCLAGRSGQRSTGQCNAFLS 367

Query: 387 RLVYCNTLKC 396
           R V CN  KC
Sbjct: 368 RPVDCNAFKC 377

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089084|ref|XP_002308630.1| predicted protein [Populus trichocarpa] gi|222854606|gb|EEE92153.1| predicted protein [Populus trichocarpa]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/347 (73%), Positives = 286/347 (82%)

Query: 51  RNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGV 110
           R       E+  +P   KF+N R+RSAYIALQAWK AIISDP NLTSNWVG  VCNYTGV
Sbjct: 1   REELDIEDEYLMLPACLKFDNPRLRSAYIALQAWKLAIISDPLNLTSNWVGSDVCNYTGV 60

Query: 111 FCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLK 170
           FCA +LDN SI+TVAGIDLNHGD+A +L  ELGLL DIALFHVN+NRFCG +P+SF KLK
Sbjct: 61  FCATSLDNSSIQTVAGIDLNHGDMAGHLVAELGLLTDIALFHVNSNRFCGKVPKSFKKLK 120

Query: 171 LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFS 230
           LL+ELDLSNNRFAG+FPYVVL LPKLK+LDLR+NEFEG +PK LFDKDLDA+FIN+NRF+
Sbjct: 121 LLYELDLSNNRFAGRFPYVVLDLPKLKYLDLRFNEFEGDLPKELFDKDLDAIFINHNRFA 180

Query: 231 FELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKN 290
            ELPDN GNSPVSV+VLANNKFHGC P S  NMS+ LNEVIL NNGL SCLP EIGLLK 
Sbjct: 181 LELPDNFGNSPVSVIVLANNKFHGCFPTSLVNMSKNLNEVILMNNGLRSCLPREIGLLKK 240

Query: 291 VTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           VTVFD S NKL G LPD I EM SL+ LNVAHNMLSG +P SVC LP+L+NFS+ YNFFT
Sbjct: 241 VTVFDASNNKLFGSLPDNIGEMESLELLNVAHNMLSGNIPGSVCLLPHLKNFSYAYNFFT 300

Query: 351 GESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQ 397
           GE P CLDL+ FDD RNCLR++P+QRSTLQC++FLSR V C   KC 
Sbjct: 301 GEPPACLDLENFDDGRNCLRNRPKQRSTLQCKVFLSRPVKCEAFKCH 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526636|ref|XP_004170319.1| PREDICTED: leucine-rich repeat extensin-like protein 4-like [Cucumis sativus]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/366 (69%), Positives = 297/366 (81%), Gaps = 1/366 (0%)

Query: 31  NGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIIS 90
           +G   +AEA FI+ RQLLYYR+ +G RGE   + PS  FEN RIR+AYIALQAWK AI+S
Sbjct: 23  HGSLSDAEALFIRHRQLLYYRDEFGDRGELVTVDPSLVFENDRIRNAYIALQAWKLAILS 82

Query: 91  DPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIAL 150
           DP N T+NWVG  VCNY GVFCA +LDN  IRTVAGIDLNHGDIA YLPEELGLL D+AL
Sbjct: 83  DPLNQTANWVGSNVCNYFGVFCAPSLDNPKIRTVAGIDLNHGDIAGYLPEELGLLTDLAL 142

Query: 151 FHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKI 210
           FH+N+NRFCGTLP  F++LKLL+ELDLSNNRFAGKFP VVL LP LKFLDLR+NEFEG +
Sbjct: 143 FHINSNRFCGTLPHRFDRLKLLYELDLSNNRFAGKFPDVVLKLPTLKFLDLRFNEFEGNV 202

Query: 211 PKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEV 270
           P+ LFDKDLDA+FIN+NRF FELPDN GNSPVSV+VLANNKFHGCLP S GNM+R LNE+
Sbjct: 203 PRELFDKDLDAIFINHNRFRFELPDNFGNSPVSVIVLANNKFHGCLPSSLGNMTR-LNEI 261

Query: 271 ILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVP 330
           I+ NNGL+SCLP EIG LKN+TVFDVS N+L+G LP+T   + SL+QLNVA+N LSG +P
Sbjct: 262 IMMNNGLNSCLPPEIGALKNLTVFDVSSNELVGPLPETFGGLVSLEQLNVANNFLSGKIP 321

Query: 331 DSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVY 390
           +++C LP L+NF+F  NFF+GE P CL +  F D+RNCL  +  QRST QC  FLSR V 
Sbjct: 322 ENICELPKLQNFTFSNNFFSGEPPACLRVPDFSDRRNCLAGRSGQRSTGQCNAFLSRPVD 381

Query: 391 CNTLKC 396
           CN  KC
Sbjct: 382 CNAFKC 387

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117332|ref|XP_002331736.1| predicted protein [Populus trichocarpa] gi|222874139|gb|EEF11270.1| predicted protein [Populus trichocarpa]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/356 (70%), Positives = 293/356 (82%), Gaps = 1/356 (0%)

Query: 41  FIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWV 100
           +I +RQLLYY++ +G RGE   + PS  FEN R+++AY+ALQAWK+AI SDP NLT+NWV
Sbjct: 2   YIDKRQLLYYKDEFGDRGERVTVDPSLVFENPRLKNAYMALQAWKQAIFSDPLNLTANWV 61

Query: 101 GCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCG 160
           G  VCNY GVFC++A DN +IRTVAGIDLNHGDIA YLPEELG L D+ALFH+N+NRFCG
Sbjct: 62  GSQVCNYEGVFCSRAPDNKTIRTVAGIDLNHGDIAGYLPEELGFLVDLALFHINSNRFCG 121

Query: 161 TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLD 220
           T+P  F KL+LLFELDLSNNRFAGKFP VVL LP LKFLDLR+NEFEG +PK LFDKDLD
Sbjct: 122 TIPHKFKKLRLLFELDLSNNRFAGKFPQVVLKLPSLKFLDLRFNEFEGTVPKELFDKDLD 181

Query: 221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280
           A+FIN+NRF F+LP N GNSPVSV+VLANNKFHGC+P S GNMS  LNE+IL NNG  SC
Sbjct: 182 AIFINHNRFVFDLPVNFGNSPVSVIVLANNKFHGCVPSSLGNMS-NLNEIILMNNGFRSC 240

Query: 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLR 340
           LP EIGLLKN+TVFDVS+N+L+G LPDT+  M SL+QLNVAHNMLSG +P S+C LPNL 
Sbjct: 241 LPAEIGLLKNLTVFDVSFNQLIGPLPDTVGGMVSLEQLNVAHNMLSGKIPASICQLPNLE 300

Query: 341 NFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC 396
           NF+F YNFFTGE PVCL L  F D+RNCL  +P QRS  QC+ FLS  V C++ +C
Sbjct: 301 NFTFSYNFFTGEPPVCLSLPDFSDRRNCLPGRPEQRSAAQCKAFLSMPVDCSSFRC 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230120|ref|NP_189091.1| leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana] gi|75334999|sp|Q9LHF1.1|LRX4_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 4; Short=AtLRX4; Short=LRR/EXTENSIN4; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|9294099|dbj|BAB01951.1| extensin-like protein [Arabidopsis thaliana] gi|332643381|gb|AEE76902.1| leucine-rich repeat extensin-like protein 4 [Arabidopsis thaliana]

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 251/382 (65%), Positives = 302/382 (79%), Gaps = 2/382 (0%)

Query: 23  AEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQ 82
           +  LS+S+N    + E  FI++RQLLYYR+ +G RGE   + PS  FEN R+RSAYIALQ
Sbjct: 23  SHSLSISSNAPLSDTEVRFIQRRQLLYYRDEFGDRGENVTVDPSLIFENPRLRSAYIALQ 82

Query: 83  AWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEEL 142
           AWK+AI+SDP N+T NW+G  VCNYTGVFC++ALDN  IRTVAGIDLNH DIA YLPEEL
Sbjct: 83  AWKQAILSDPNNITVNWIGSNVCNYTGVFCSKALDNRKIRTVAGIDLNHADIAGYLPEEL 142

Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
           GLL D+ALFHVN+NRFCGT+P  F +LKLLFELDLSNNRFAGKFP VVL LP LKFLDLR
Sbjct: 143 GLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLR 202

Query: 203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGN 262
           +NEFEG +PK LF K+LDA+FIN+NRF FELP+N G+SPVSV+VLANN FHGC+P S   
Sbjct: 203 FNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVE 262

Query: 263 MSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322
           M + LNE+I  NNGL+SCLP +IG LKNVTVFDVS+N+L+G LP+++  M  ++QLNVAH
Sbjct: 263 M-KNLNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAH 321

Query: 323 NMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCR 382
           N+LSG +P S+C LP L NF++ YNFFTGE+PVCL L  FDD+RNCL  +P QRS+ QC 
Sbjct: 322 NLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCS 381

Query: 383 MFLSR-LVYCNTLKCQSSPQPP 403
            FLSR  V C +  C  S   P
Sbjct: 382 AFLSRPSVDCGSFGCGRSVVKP 403

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141819|ref|XP_002324259.1| predicted protein [Populus trichocarpa] gi|222865693|gb|EEF02824.1| predicted protein [Populus trichocarpa]

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 268/400 (67%), Positives = 315/400 (78%), Gaps = 3/400 (0%)

Query: 1   MRPKINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQ--RQLLYYRNRYGGRG 58
           M+ K +I LP F  LTLI    A+  S S+N    +     I+Q  RQLLYYR       
Sbjct: 1   MKEKTHI-LPFFTTLTLIGFTAAQHHSFSSNADPRDLRTTHIEQNQRQLLYYREELDVED 59

Query: 59  EFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDN 118
           E+  +PP  KF+N R+RSAYIALQAWK+AIISDP NLTSNW G  VCNYTGVFCA ALD+
Sbjct: 60  EYLMLPPCLKFDNPRLRSAYIALQAWKQAIISDPLNLTSNWAGPDVCNYTGVFCATALDD 119

Query: 119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLS 178
            SI+TVAGIDLNHGD+A +L EELGLL DIALFH+N+NRFCG +P++  KLKLL+ELDLS
Sbjct: 120 SSIQTVAGIDLNHGDMAGHLVEELGLLTDIALFHINSNRFCGRVPKTLKKLKLLYELDLS 179

Query: 179 NNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG 238
           NNRFAG FP VVL LPKLK+LDLR+NEFEG +PK LF+KDLDA+F+N+NRF+ ELP+N G
Sbjct: 180 NNRFAGGFPCVVLDLPKLKYLDLRFNEFEGDLPKELFNKDLDAIFVNHNRFALELPNNFG 239

Query: 239 NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSY 298
           NSPVSV+VLANNKFHGC P S  NMS+TLNEVIL NNGL SCLP+EIGLLK VTVFD S 
Sbjct: 240 NSPVSVMVLANNKFHGCFPPSLANMSKTLNEVILMNNGLRSCLPKEIGLLKKVTVFDASN 299

Query: 299 NKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLD 358
           NKL+G LPDTI +M SL+QLNVAHNMLSG + DSVC LP+L++FS+ YNF TGE P CLD
Sbjct: 300 NKLVGSLPDTIGDMESLEQLNVAHNMLSGEIHDSVCLLPHLKSFSYAYNFITGEPPACLD 359

Query: 359 LQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQS 398
           L+ FDD RNC R +P+QRSTLQC++FLSR V+C    C  
Sbjct: 360 LEDFDDSRNCFRVRPKQRSTLQCKVFLSRPVHCEAFNCHE 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	500
TAIR|locus:2094854	494	AT3G24480 [Arabidopsis thalian	0.746	0.755	0.664	8.3e-138
TAIR|locus:2142105	760	LRX3 "AT4G13340" [Arabidopsis	0.774	0.509	0.644	3.7e-135
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.788	0.459	0.622	4.8e-133
TAIR|locus:2179449	433	AT5G25550 "AT5G25550" [Arabido	0.692	0.799	0.613	6.7e-120
TAIR|locus:2094389	470	AT3G22800 "AT3G22800" [Arabido	0.662	0.704	0.597	4.9e-108
TAIR|locus:2010247	847	AT1G49490 [Arabidopsis thalian	0.668	0.394	0.563	1.9e-106
TAIR|locus:2008895	744	LRX1 "AT1G12040" [Arabidopsis	0.67	0.450	0.560	1.2e-104
TAIR|locus:2085889	956	AT3G19020 [Arabidopsis thalian	0.72	0.376	0.521	6.7e-104
TAIR|locus:2044576	727	AT2G15880 [Arabidopsis thalian	0.718	0.493	0.506	1.3e-100
TAIR|locus:2118949	699	AT4G33970 [Arabidopsis thalian	0.718	0.513	0.505	2.7e-100

TAIR|locus:2094854 AT3G24480 [Arabidopsis thaliana (taxid:3702)]

 Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
 Identities = 249/375 (66%), Positives = 300/375 (80%)

Query:    23 AEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQ 82
             +  LS+S+N    + E  FI++RQLLYYR+ +G RGE   + PS  FEN R+RSAYIALQ
Sbjct:    23 SHSLSISSNAPLSDTEVRFIQRRQLLYYRDEFGDRGENVTVDPSLIFENPRLRSAYIALQ 82

Query:    83 AWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEEL 142
             AWK+AI+SDP N+T NW+G  VCNYTGVFC++ALDN  IRTVAGIDLNH DIA YLPEEL
Sbjct:    83 AWKQAILSDPNNITVNWIGSNVCNYTGVFCSKALDNRKIRTVAGIDLNHADIAGYLPEEL 142

Query:   143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
             GLL D+ALFHVN+NRFCGT+P  F +LKLLFELDLSNNRFAGKFP VVL LP LKFLDLR
Sbjct:   143 GLLTDLALFHVNSNRFCGTVPHKFKQLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLR 202

Query:   203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGN 262
             +NEFEG +PK LF K+LDA+FIN+NRF FELP+N G+SPVSV+VLANN FHGC+P S   
Sbjct:   203 FNEFEGTVPKELFSKNLDAIFINHNRFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVE 262

Query:   263 MSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322
             M + LNE+I  NNGL+SCLP +IG LKNVTVFDVS+N+L+G LP+++  M  ++QLNVAH
Sbjct:   263 M-KNLNEIIFMNNGLNSCLPADIGRLKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAH 321

Query:   323 NMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCR 382
             N+LSG +P S+C LP L NF++ YNFFTGE+PVCL L  FDD+RNCL  +P QRS+ QC 
Sbjct:   322 NLLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQCS 381

Query:   383 MFLSR-LVYCNTLKC 396
              FLSR  V C +  C
Sbjct:   382 AFLSRPSVDCGSFGC 396

GO:0005576 "extracellular region" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2142105 LRX3 "AT4G13340" [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 256/397 (64%), Positives = 306/397 (77%)

Query:     1 MRPKINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEF 60
             M+  I I+L  F    LI L  A  +S S+ GV  + E   I++RQLL     +  R   
Sbjct:     1 MKKTIQILLFFFF---LINLTNALSIS-SDGGVLSDNEVRHIQRRQLL----EFAERSVK 52

Query:    61 GRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHS 120
               + PS  FEN R+R+AYIALQAWK+AI+SDP N TSNW+G  VCNYTGVFC+ ALDN  
Sbjct:    53 ITVDPSLNFENPRLRNAYIALQAWKQAILSDPNNFTSNWIGSNVCNYTGVFCSPALDNRK 112

Query:   121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180
             IRTVAGIDLNH DIA YLPEELGLL+D+ALFHVN+NRFCGT+P  FN+LKLLFELDLSNN
Sbjct:   113 IRTVAGIDLNHADIAGYLPEELGLLSDLALFHVNSNRFCGTVPHRFNRLKLLFELDLSNN 172

Query:   181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNS 240
             RFAGKFP VVL LP LKFLDLR+NEFEG +PK LF KDLDA+FIN+NRF FELP+N G+S
Sbjct:   173 RFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHNRFRFELPENFGDS 232

Query:   241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK 300
             PVSV+VLANN+FHGC+P S   M + LNE+I  NNGL+SCLP +IG LKNVTVFDVS+N+
Sbjct:   233 PVSVIVLANNRFHGCVPSSLVEM-KNLNEIIFMNNGLNSCLPSDIGRLKNVTVFDVSFNE 291

Query:   301 LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
             L+G LP+++ EM S++QLNVAHNMLSG +P S+C LP L NF++ YNFFTGE+PVCL L 
Sbjct:   292 LVGPLPESVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYNFFTGEAPVCLRLP 351

Query:   361 GFDDKRNCLRDKPRQRSTLQCRMFLSRL-VYCNTLKC 396
              FDD+RNCL  +P QRS  QC+ FLSR  V C +  C
Sbjct:   352 EFDDRRNCLPGRPAQRSPGQCKAFLSRPPVNCGSFSC 388

GO:0005515 "protein binding" evidence=IPI

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
 Identities = 247/397 (62%), Positives = 299/397 (75%)

Query:     1 MRPKINIILPLFAILTLITLVTAEKLSVSNNGVFLEAEAAFIKQRQLLYYRNRYGGRGEF 60
             M    ++I  L  I    T ++   LS++ NG   + E   I QRQLLY+R+ +G RGE 
Sbjct:     6 MMKNTSLIFVLLFITFFFTSISYS-LSLTFNGDLSDNEVRLITQRQLLYFRDEFGDRGEN 64

Query:    61 GRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHS 120
               + PS  FEN R+R+AYIALQAWK+AI+SDP N T+NW+G  VC+YTGV+CA ALDN  
Sbjct:    65 VDVDPSLVFENPRLRNAYIALQAWKQAILSDPNNFTTNWIGSDVCSYTGVYCAPALDNRR 124

Query:   121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180
             IRTVAGIDLNH DIA YLP+ELGLL D+ALFH+N+NRFCGT+P  FN+LKLLFELDLSNN
Sbjct:   125 IRTVAGIDLNHADIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFNRLKLLFELDLSNN 184

Query:   181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNS 240
             RFAG FP VVL LP LKFLDLR+NEFEG +P+ LF KDLDA+FIN+NRF FELPDN+G+S
Sbjct:   185 RFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHNRFRFELPDNLGDS 244

Query:   241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK 300
             PVSV+V+ANN FHGC+P S G+M R L E+I   NG +SCLP +IG LKNVTVFD S+N+
Sbjct:   245 PVSVIVVANNHFHGCIPTSLGDM-RNLEEIIFMENGFNSCLPSQIGRLKNVTVFDFSFNE 303

Query:   301 LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
             L+G LP +I  M S++QLNVAHN  SG +P ++C LP L NF+F YNFFTGE PVCL L 
Sbjct:   304 LVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYNFFTGEPPVCLGLP 363

Query:   361 GFDDKRNCLRDKPRQRSTLQCRMFLSRL-VYCNTLKC 396
             GFDD+RNCL  +P QRS  QC  F S   V C +  C
Sbjct:   364 GFDDRRNCLPARPAQRSPGQCAAFSSLPPVDCGSFGC 400

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2179449 AT5G25550 "AT5G25550" [Arabidopsis thaliana (taxid:3702)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 216/352 (61%), Positives = 280/352 (79%)

Query:    45 RQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYV 104
             RQLLY R+      +   IPP   FEN R+  AY+ALQAWK+A+ISDPWNLT+NW G  V
Sbjct:    28 RQLLYTRD------DPITIPPYLIFENVRLERAYVALQAWKRAMISDPWNLTTNWFGSRV 81

Query:   105 CNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPR 164
             C+Y GV C+++LD+  ++TV+G+DLN GDIA +LPEELGLL DIALFHVN+NRFCGTLP 
Sbjct:    82 CDYNGVVCSESLDDPLVKTVSGVDLNQGDIAGHLPEELGLLTDIALFHVNSNRFCGTLPV 141

Query:   165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
              F++L LLFELDLSNNRFAGKFP VV+GLPKLK+LDLRYNEFEG++P++LFDKDLDA+F+
Sbjct:   142 GFSQLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFL 201

Query:   225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
             N+NRF  ++P N+GNSPVSVLVLA+N+F GC+P SFG M +TLNE+IL +NGL SC+P +
Sbjct:   202 NSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMDNGLQSCIPND 261

Query:   285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
             +GLL+NVTV D+SYN L+GELP ++ +M +L+ LNV  NMLSG +PD +CSL  LR+F +
Sbjct:   262 MGLLQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFRY 321

Query:   345 DYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC 396
               N+FTGE   C  L+ ++   NC +D   QRS ++C+MFLS+ V C++ KC
Sbjct:   322 GSNYFTGEPATCRYLENYNYTMNCFKDVRDQRSMMECKMFLSKPVDCDSFKC 373

GO:0008150 "biological_process" evidence=ND

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2094389 AT3G22800 "AT3G22800" [Arabidopsis thaliana (taxid:3702)]

 Score = 1068 (381.0 bits), Expect = 4.9e-108, P = 4.9e-108
 Identities = 200/335 (59%), Positives = 247/335 (73%)

Query:    63 IPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIR 122
             +PP     N R+  A+ ALQAWK  I SDP   TSNW G  VCNYTGVFCA ALDN  + 
Sbjct:    43 LPP---ITNPRLLKAFTALQAWKFTITSDPNGFTSNWCGPNVCNYTGVFCAPALDNPYVL 99

Query:   123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF 182
             TVAGIDLNH +IA YLP ELGLL D+ALFH+N+NRF G LP++   L LL ELD+SNN+ 
Sbjct:   100 TVAGIDLNHANIAGYLPLELGLLTDLALFHINSNRFQGQLPKTLKCLHLLHELDVSNNKL 159

Query:   183 AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPV 242
             +G+FP V+  LP LKFLD+R+NEF+G +P  LFD +LDA+FIN+N+F F LP NIGNSPV
Sbjct:   160 SGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDNKFQFRLPRNIGNSPV 219

Query:   243 SVLVLANNKFHG-CLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
             SVLVLANN   G C+P SF  M +TL+E+I+TN+ L  CL  EIGLL  +TVFDVSYN L
Sbjct:   220 SVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIGLLNQLTVFDVSYNNL 279

Query:   302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQG 361
             +G LP+TI +M SL+QLN+AHN  SG +P+S+C LP L NF++ YNFF+GE P CL LQ 
Sbjct:   280 VGSLPETIGDMKSLEQLNIAHNKFSGYIPESICRLPRLENFTYSYNFFSGEPPACLRLQE 339

Query:   362 FDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC 396
             FDD+RNCL  +P QRS  +C+ F S  + C +  C
Sbjct:   340 FDDRRNCLPSRPMQRSLAECKSFSSYPIDCASFGC 374

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2010247 AT1G49490 [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 191/339 (56%), Positives = 245/339 (72%)

Query:    62 RIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSI 121
             ++ P+ KFEN R++ AYIALQAWKKAI SDP+  T+NWVG  VC+Y GV+CA ALD+ S+
Sbjct:    47 KVDPNLKFENDRLKRAYIALQAWKKAIYSDPFKTTANWVGSDVCSYNGVYCAPALDDDSL 106

Query:   122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR 181
               VAG+DLNH DIA +LP ELGL+ D+ALFH+N+NRFCG +P+S +KL L++E D+SNNR
Sbjct:   107 TVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPKSLSKLALMYEFDVSNNR 166

Query:   182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP 241
             F G+FP V L  P LKFLDLRYNEFEG +P  +FDKDLDA+F+NNNRF   +P  IG S 
Sbjct:   167 FVGQFPEVSLSWPSLKFLDLRYNEFEGSLPSEIFDKDLDAIFLNNNRFESVIPGTIGKSK 226

Query:   242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
              SV+  ANNKF GC+P S GNM + LNE++ T N L  C P EIGLL NVTVFD S N  
Sbjct:   227 ASVVTFANNKFSGCIPKSIGNM-KNLNEIVFTGNNLTGCFPNEIGLLNNVTVFDASKNGF 285

Query:   302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQG 361
             +G LP T++ + S++QL+++HN L+G V D  C LPNL +F F YNFF GE+  C+  + 
Sbjct:   286 VGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYNFFNGEAESCVPGRN 345

Query:   362 ----FDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC 396
                 FDD  NCL+++P Q+   QC   +SR V C+  KC
Sbjct:   346 NGKQFDDTNNCLQNRPSQKPAKQCLPVVSRPVDCSKDKC 384

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2008895 LRX1 "AT1G12040" [Arabidopsis thaliana (taxid:3702)]

 Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
 Identities = 190/339 (56%), Positives = 246/339 (72%)

Query:    62 RIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSI 121
             ++    KFEN ++R AYIALQ+WKKAI SDP+N T+NW G  VC+Y G++CA +      
Sbjct:    39 KVDKRLKFENPKLRQAYIALQSWKKAIFSDPFNFTANWNGSDVCSYNGIYCAPSPSYPKT 98

Query:   122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR 181
             R VAGIDLNH D+A YL  ELGLL+D+ALFH+N+NRFCG +P +FN++KLL+ELDLSNNR
Sbjct:    99 RVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFNRMKLLYELDLSNNR 158

Query:   182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP 241
             F GKFP VVL LP LKFLDLRYNEFEGKIP  LFD++LDA+F+N+NRF F +P N+GNSP
Sbjct:   159 FVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHNRFRFGIPKNMGNSP 218

Query:   242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
             VS LVLA+N   GC+P S G M +TLNE+IL+N+ L  CLP +IG LK VTVFD++ N+L
Sbjct:   219 VSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRL 278

Query:   302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL-DLQ 360
              G LP ++  M SL++L+VA+N  +G +P S+C L NL NF++  N+F+G  P+C   L 
Sbjct:   279 QGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSNYFSGRPPICAASLL 338

Query:   361 G---FDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKC 396
                  +   NC+    RQRS  QC   L+R V C+   C
Sbjct:   339 ADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGC 377

GO:0009927 "histidine phosphotransfer kinase activity" evidence=NAS

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010054 "trichoblast differentiation" evidence=RCA;IMP

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2085889 AT3G19020 [Arabidopsis thaliana (taxid:3702)]

 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 191/366 (52%), Positives = 253/366 (69%)

Query:    36 EAEAAFIKQRQLLYYRNRYGGRGEFG-RIPPSFKFENSRIRSAYIALQAWKKAIISDPWN 94
             + EA+F+ +RQLL          +    +    KF N+R++ AYIALQAWKKA  SDP+N
Sbjct:    33 DEEASFLTRRQLLALSENGDLPDDIEYEVDLDLKFANNRLKRAYIALQAWKKAFYSDPFN 92

Query:    95 LTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVN 154
               +NWVG  VC+Y GVFCA ALD+ S+  VAGIDLNH DIA YLP ELGLL D+ALFHVN
Sbjct:    93 TAANWVGPDVCSYKGVFCAPALDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHVN 152

Query:   155 TNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKAL 214
             +NRFCG +P+S +KL L++E D+SNNRF G FP V L  P LKFLD+RYN+FEGK+P  +
Sbjct:   153 SNRFCGVIPKSLSKLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEI 212

Query:   215 FDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN 274
             FDKDLDA+F+NNNRF   +P+ IG S  SV+  A+NKF GC+P + G M + LNE++   
Sbjct:   213 FDKDLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQM-KNLNEIVFIG 271

Query:   275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334
             N L  CLP EIG L NVTVFD S N  +G LP T++ + +++Q++ ++N  +G V D++C
Sbjct:   272 NNLSGCLPNEIGSLNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNIC 331

Query:   335 SLPNLRNFSFDYNFFTGESPVCL----DLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVY 390
              LP L NF+F YNFF GE+  C+      + FDD  NCL+++P Q+S  +C   +SR V 
Sbjct:   332 KLPKLSNFTFSYNFFNGEAQSCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVD 391

Query:   391 CNTLKC 396
             C+  KC
Sbjct:   392 CSKDKC 397

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2044576 AT2G15880 [Arabidopsis thaliana (taxid:3702)]

 Score = 998 (356.4 bits), Expect = 1.3e-100, P = 1.3e-100
 Identities = 186/367 (50%), Positives = 250/367 (68%)

Query:    36 EAEAAFIKQRQLLYY--RNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPW 93
             +AE +FI QRQLL            E+  +     F N R++ AYIALQAWKKA+ SDP+
Sbjct:    21 DAEVSFIAQRQLLTLPENGELPDDIEY-EVDLKVTFANHRLKRAYIALQAWKKAVYSDPF 79

Query:    94 NLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHV 153
             N T NW G +VC YTGVFCA ALD+  +  VAG+DLN  DIA +LP ELGL+ D+A+FH+
Sbjct:    80 NTTGNWHGPHVCGYTGVFCAPALDDPDVAVVAGVDLNGADIAGHLPAELGLMTDVAMFHL 139

Query:   154 NTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKA 213
             N+NRFCG +P+SF KL L+ E D+SNNRF G FP VVL  P +KF+D+RYN+FEG++P  
Sbjct:   140 NSNRFCGIIPKSFEKLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDFEGQVPPE 199

Query:   214 LFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
             LF KDLDA+F+NNNRF+  +PD++G S  SV+  A+NKF GC+P S GNM + LNE+I  
Sbjct:   200 LFKKDLDAIFLNNNRFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNM-KNLNEIIFK 258

Query:   274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
             +N L  C P EIG L NV VFD S N   G LP +   +TS+++ +++ N L+G +P+++
Sbjct:   259 DNSLGGCFPSEIGKLANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENI 318

Query:   334 CSLPNLRNFSFDYNFFTGESPVCL---DLQ-GFDDKRNCLRDKPRQRSTLQCRMFLSRLV 389
             C LP L N ++ YN+F G+   C+     Q   DD RNCL D+P+QRS  +C + +SR V
Sbjct:   319 CKLPKLVNLTYAYNYFNGQGDSCVPGSQKQIALDDTRNCLPDRPKQRSAKECAVVISRPV 378

Query:   390 YCNTLKC 396
              C+  KC
Sbjct:   379 DCSKDKC 385

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2118949 AT4G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
 Identities = 186/368 (50%), Positives = 253/368 (68%)

Query:    36 EAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFK--FENSRIRSAYIALQAWKKAIISDPW 93
             + EAAFI QRQLL   +  G   +        K  F N+R++ AYIALQAWKKAI SDP+
Sbjct:    47 DTEAAFIVQRQLLTLPDN-GELPDDIEYEVDLKATFANTRLKRAYIALQAWKKAIFSDPF 105

Query:    94 NLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHV 153
             N T NW G +VC YTGV CA ALD+  +  VAG+DLN  DIA +LP ELGL+ D+A+FH+
Sbjct:   106 NTTGNWHGPHVCGYTGVVCAPALDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMFHL 165

Query:   154 NTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKA 213
             N+NRFCG +P+SF KLKL+ E D+SNNRF G FP VVL  P +K+ DLR+N+FEG++P  
Sbjct:   166 NSNRFCGIIPKSFEKLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPE 225

Query:   214 LFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
             LF K+LDA+F+N+NRF+  +P+++G SP SV+  ANNKF GC+P S GNM + LNE++  
Sbjct:   226 LFKKELDAIFLNDNRFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNM-KNLNEIVFM 284

Query:   274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
             +N L  C P EIG L NVTVFD S N  +G LP +   +TS+++++++ N L+G VP ++
Sbjct:   285 DNDLGGCFPSEIGKLSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHNI 344

Query:   334 CSLPNLRNFSFDYNFFTGESPVCLDLQG-----FDDKRNCLRDKPRQRSTLQCRMFLSRL 388
             C LPNL N ++ YN+F+G+   C+          DD RNCL  +P QRS  +C + ++R 
Sbjct:   345 CQLPNLVNLTYSYNYFSGQGGSCVPGGSRKEIALDDTRNCLASRPEQRSAQECAVVINRP 404

Query:   389 VYCNTLKC 396
             V C+  KC
Sbjct:   405 VDCSKDKC 412

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHF1	LRX4_ARATH	No assigned EC number	0.6570	0.76	0.7692	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	500
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-26
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	8e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-06
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	6e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	1e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	1e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	3e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	4e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-05
pfam03251	458	pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd prote	6e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	6e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	7e-05
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	8e-05
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	9e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-04
PHA02682	280	PHA02682, PHA02682, ORF080 virion core protein; Pr	1e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	1e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	1e-04
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	2e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-04
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	3e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	3e-04
pfam08347	200	pfam08347, CTNNB1_binding, N-terminal CTNNB1 bindi	4e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	4e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-04
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	5e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	6e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	6e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	7e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	7e-04
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	7e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	8e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	9e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	9e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	9e-04
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.001
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.001
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.001
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	0.001
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	0.002
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.002
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	0.003
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	0.003
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.003
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.003
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	0.003
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.004
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.004
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (305), Expect = 4e-29
 Identities = 86/273 (31%), Positives = 135/273 (49%), Gaps = 13/273 (4%)

Query: 86  KAIISDPWNLTSNW-VGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGL 144
           K+ I+DP    SNW     VC + G+ C     N+S R V  IDL+  +I+  +   +  
Sbjct: 38  KSSINDPLKYLSNWNSSADVCLWQGITC-----NNSSR-VVSIDLSGKNISGKISSAIFR 91

Query: 145 LADIALFHVNTNRFCGTLPRS-FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY 203
           L  I   +++ N+  G +P   F     L  L+LSNN F G  P     +P L+ LDL  
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSN 149

Query: 204 NEFEGKIPKAL-FDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFG 261
           N   G+IP  +     L  + +  N    ++P+++ N + +  L LA+N+  G +P   G
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 262 NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321
            M ++L  + L  N L   +P EIG L ++   D+ YN L G +P ++  + +LQ L + 
Sbjct: 210 QM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
            N LSG +P S+ SL  L +     N  +GE P
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  114 bits (287), Expect = 8e-27
 Identities = 64/217 (29%), Positives = 108/217 (49%), Gaps = 24/217 (11%)

Query: 138 LPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197
           +P+ LG    +    +  N F G LP  F KL L++ LD+SNN   G+       +P L+
Sbjct: 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ 455

Query: 198 FLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLP 257
            L L  N+F G                        LPD+ G+  +  L L+ N+F G +P
Sbjct: 456 MLSLARNKFFG-----------------------GLPDSFGSKRLENLDLSRNQFSGAVP 492

Query: 258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQ 317
              G++S  L ++ L+ N L   +P+E+   K +   D+S+N+L G++P + +EM  L Q
Sbjct: 493 RKLGSLSE-LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551

Query: 318 LNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
           L+++ N LSG +P ++ ++ +L   +  +N   G  P
Sbjct: 552 LDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  113 bits (283), Expect = 3e-26
 Identities = 81/253 (32%), Positives = 119/253 (47%), Gaps = 26/253 (10%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +DL + ++   +P  LG L ++    +  N+  G +P S   L+ L  LDLS+N  +G+ 
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIG-NSPVSV 244
           P +V+ L  L+ L L  N F GKIP AL     L  + + +N+FS E+P N+G ++ ++V
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360

Query: 245 LVLANNKFHGCLPLS------------FGN-----------MSRTLNEVILTNNGLHSCL 281
           L L+ N   G +P              F N             R+L  V L +N     L
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN 341
           P E   L  V   D+S N L G +     +M SLQ L++A N   G +PDS  S   L N
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLEN 479

Query: 342 FSFDYNFFTGESP 354
                N F+G  P
Sbjct: 480 LDLSRNQFSGAVP 492

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 3/233 (1%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +DL    +   +P  L  L  +    + +N+  G +PR   ++K L  + L  N  +G+ 
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNI-GNSPVSV 244
           PY + GL  L  LDL YN   G IP +L + K+L  +F+  N+ S  +P +I     +  
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288

Query: 245 LVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE 304
           L L++N   G +P     + + L  + L +N     +P  +  L  + V  +  NK  GE
Sbjct: 289 LDLSDNSLSGEIPELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGE 347

Query: 305 LPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
           +P  + +  +L  L+++ N L+G +P+ +CS  NL       N   GE P  L
Sbjct: 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.3 bits (211), Expect = 2e-17
 Identities = 66/236 (27%), Positives = 114/236 (48%), Gaps = 27/236 (11%)

Query: 121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN 180
           ++++  I L + +++  +P E+G L  +    +  N   G +P S   LK L  L L  N
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270

Query: 181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN 239
           + +G  P  +  L KL  LDL  N   G+IP+ +   ++L+ + + +N F+ ++P  + +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Query: 240 SP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSY 298
            P + VL L +NKF G +P + G  +                         N+TV D+S 
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHN-------------------------NLTVLDLST 365

Query: 299 NKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
           N L GE+P+ +    +L +L +  N L G +P S+ +  +LR      N F+GE P
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 5/122 (4%)

Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
              G   +  L L N    G +P     + R L  + L+ N +   +P  +G + ++ V 
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVL 471

Query: 295 DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
           D+SYN   G +P+++ ++TSL+ LN+  N LSG VP ++     L   SF+   FT  + 
Sbjct: 472 DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL-LHRASFN---FTDNAG 527

Query: 355 VC 356
           +C
Sbjct: 528 LC 529

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 26/86 (30%), Positives = 52/86 (60%)

Query: 272 LTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPD 331
           L N GL   +P +I  L+++   ++S N + G +P ++  +TSL+ L++++N  +G++P+
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 332 SVCSLPNLRNFSFDYNFFTGESPVCL 357
           S+  L +LR  + + N  +G  P  L
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +DL+    +  +P +LG L+++    ++ N+  G +P   +  K L  LDLS+N+ +G+ 
Sbjct: 480 LDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQI 539

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELP 234
           P     +P L  LDL  N+  G+IPK L + + L  V I++N     LP
Sbjct: 540 PASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 62.6 bits (152), Expect = 4e-10
 Identities = 29/100 (29%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 398  SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
            +  +PPV  L    RP         +LPP        P  PP     P P   P PP   
Sbjct: 2877 APARPPVRRLA---RPAVSRSTESFALPPDQ------PERPPQPQAPPPPQPQPQPP--- 2924

Query: 458  LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                PPP P P    PP   PP  P         P    P
Sbjct: 2925 ----PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP 2960

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 61.9 bits (150), Expect = 6e-10
 Identities = 40/120 (33%), Positives = 42/120 (35%), Gaps = 18/120 (15%)

Query: 392  NTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSP--RPPPLFSPTPTPIL 449
                  + P PP  S   P  PPPPP P P SLP   +        R PP  SP   P  
Sbjct: 2819 PPAASPAGPLPPPTS-AQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAA 2877

Query: 450  PPPPPNLRL-----------QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
            P  PP  RL             LPP  P      PP    P  P P     P P P PP 
Sbjct: 2878 PARPPVRRLARPAVSRSTESFALPPDQPER----PPQPQAPPPPQPQPQPPPPPQPQPPP 2933

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 61.9 bits (150), Expect = 6e-10
 Identities = 42/123 (34%), Positives = 44/123 (35%), Gaps = 21/123 (17%)

Query: 393  TLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRP-------PPLFSPTP 445
             L   +SP  P   LPPP    P  PP P   PPP      S  P       PP  SP  
Sbjct: 2817 ALPPAASPAGP---LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA 2873

Query: 446  TPILPPPPPNLRL-----------QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYP 494
             P  P  PP  RL             LPP  P    +   P PP   P P     P P P
Sbjct: 2874 KPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP 2933

Query: 495  PPP 497
            PPP
Sbjct: 2934 PPP 2936

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 397  QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPP-PN 455
              S     ++LPP     PP P      PPPP      P+P P   P P P  PPPP P 
Sbjct: 2890 AVSRSTESFALPPDQPERPPQPQ----APPPPQ-----PQPQPPPPPQPQPPPPPPPRPQ 2940

Query: 456  LRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              L P   P+         P P     +P   A+P    P P
Sbjct: 2941 PPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQP 2982

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 8/86 (9%)

Query: 400 PQPPVYSLPPPVRPPPPP---PPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           P  P  + P PVRP P P   P    +   PP   +     PP     P P+ PP P   
Sbjct: 368 PAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPP--PVPPRPVAPPVPHTP 425

Query: 457 RLQPLPPPSPIPCEKQP---PPSPPP 479
              P    + IP +++P   PP+PP 
Sbjct: 426 ESAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 56.1 bits (135), Expect = 4e-08
 Identities = 34/119 (28%), Positives = 40/119 (33%), Gaps = 23/119 (19%)

Query: 397  QSSPQPPVYSLPPPVRPPPP--PPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPP 454
             + P+ PV     P  P PP   PP   +  PPP     SP P         P   PPP 
Sbjct: 2595 SARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP----SPSPAANEPDPHPPPTVPPPE 2650

Query: 455  NLRLQPLPP----------------PSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              R  P P                  S  P   +   + P  G L S+ A P P PP P
Sbjct: 2651 RPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL-ADPPPPPPTP 2708

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 29/101 (28%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 398 SSPQPPVYS---LPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPP 454
           S   PP  S      P  P  P  P   SLPP P+    S  PPP       P  PP P 
Sbjct: 183 SPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS-FQSDTPPPSPESPTNPSPPPGPA 241

Query: 455 NLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPP 495
                P PP   +P      P+PP      +  A       
Sbjct: 242 A---PPPPPVQQVPPLSTAKPTPPSA---SATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 28/89 (31%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 398  SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
               +PP    PPP +P P PPP P   PPPP      P   P   P          P   
Sbjct: 2904 QPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPW 2963

Query: 458  LQPLPPPS-PIPCEKQPPPSPPPYGPLPS 485
            L  L P    +P  + P P+P    P  S
Sbjct: 2964 LGALVPGRVAVPRFRVPQPAPSREAPASS 2992

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 30/110 (27%), Positives = 33/110 (30%), Gaps = 11/110 (10%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPT----------PT 446
              PQPP   LP  + P     P       PP Y       P    P             
Sbjct: 170 PQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQ 229

Query: 447 PILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPP 496
           P LPP  P  +  PL  P      +Q PP PP           P   PPP
Sbjct: 230 PPLPPQLPQ-QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPP 278

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 6/105 (5%)

Query: 399 SPQPPVYSLPPPVRPPP----PPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPP 454
           +P     + P P   P      P   P + PP P     +  P    +  P  +   P P
Sbjct: 392 APVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAP 451

Query: 455 NLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLF 499
             +    P    IP    P P+     P P+         P    
Sbjct: 452 PAQAA--PETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 23/99 (23%), Positives = 26/99 (26%), Gaps = 6/99 (6%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
           +     +           P   P S P  P      P PP   S      LPP P +   
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVP----SFPSPPEDPSSPSDSSLPPAPSS--F 219

Query: 459 QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
           Q   PP        P P P P  P P       P     
Sbjct: 220 QSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK 258

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 32/105 (30%), Positives = 35/105 (33%), Gaps = 10/105 (9%)

Query: 400  PQPPVYSLPPPVRPPPP----PPPVPVSLPPPPTYCIHSPRP--PPLFSPTPTPILPPPP 453
            P PP   LPP   P  P    PPP P   P  P     + RP  PP  +    P+     
Sbjct: 2551 PPPP---LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGD 2607

Query: 454  PNLRLQPLPPPSPIPCEKQPPPSPPPYG-PLPSITAIPYPYPPPP 497
            P     P P P        PPPSP P             P P  P
Sbjct: 2608 PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 21/101 (20%), Positives = 28/101 (27%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
            ++      + P     P    P   + P P      +P P P  +P       P     
Sbjct: 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAP 454

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              P   PS  P         P   P P+  A P P   P 
Sbjct: 455 SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPA 495

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 25/90 (27%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 415 PPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPP-SPIPCEKQP 473
           P P P P   P         P P P   P        PP     +   PP  P      P
Sbjct: 362 PVPAPQPAK-PTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 474 PPSPPPYGPLPSITAIP------YPYPPPP 497
            P  P   P  +  AIP      Y  P PP
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPPAPP 450

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 27/99 (27%), Positives = 31/99 (31%), Gaps = 3/99 (3%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
             +    +   P  PP   P VP S P PP     SP    L  P P+      PP    
Sbjct: 173 PGEDADPASASPSDPPSSSPGVP-SFPSPPED-PSSPSDSSL-PPAPSSFQSDTPPPSPE 229

Query: 459 QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
            P  P  P      PPP      PL +    P      P
Sbjct: 230 SPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATP 268

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 52.5 bits (126), Expect = 4e-07
 Identities = 32/108 (29%), Positives = 36/108 (33%), Gaps = 8/108 (7%)

Query: 396 CQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPN 455
                QPP Y  PP   P    P       P P+     P  PP     P P+  P  P 
Sbjct: 194 QGPPEQPPGYPQPPQGHPEQVQPQ---QFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPG 250

Query: 456 LRLQPLPPPSPIPCEKQPPPSPPPYG-PLPSITAIPYP----YPPPPL 498
           L  Q  PPP   P ++Q PP P     P    T  P        P P 
Sbjct: 251 LSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLPP 298

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 13/252 (5%)

Query: 113 AQALDNHSIRTVAGIDL-NHGDIASY-LPEELGLLADIALFHVNTNRFCGTLPRSFNKLK 170
              L   S+  +  +DL +   I+S    E L  L  +    +N NR    +      L 
Sbjct: 58  TLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLE-LT 116

Query: 171 LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE-GKIPKALFDKDLDAVFINNNRF 229
            L  LDL NN      P + L    LK LDL  N+ E    P        +     N+  
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-- 174

Query: 230 SFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLL 288
             +LP  + N   ++ L L+ NK    LP     +   L E+ L+NN +       +  L
Sbjct: 175 LSDLPKLLSNLSNLNNLDLSGNKISD-LP-PEIELLSALEELDLSNNSIIEL-LSSLSNL 231

Query: 289 KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348
           KN++  ++S NKL  +LP++I  +++L+ L++++N +S     S+ SL NLR      N 
Sbjct: 232 KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELDLSGNS 288

Query: 349 FTGESPVCLDLQ 360
            +   P+   L 
Sbjct: 289 LSNALPLIALLL 300

Length = 394

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.4 bits (123), Expect = 8e-07
 Identities = 21/119 (17%), Positives = 28/119 (23%), Gaps = 17/119 (14%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHS-----------PRPPPLFSPTPT 446
           ++P     + P            P    P P     +           P P P  +  P 
Sbjct: 400 AAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPA 459

Query: 447 PILPP------PPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLF 499
               P      P            +P          PPP+  LP   A P P  P    
Sbjct: 460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAP 518

Length = 700

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 107 YTGVFCAQALDNHSIR-TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRS 165
           ++G  C    D+   +  + G+ L++  +  ++P ++  L  +   +++ N   G +P S
Sbjct: 404 WSGADCQ--FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS 461

Query: 166 FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN 225
              +  L  LDLS N F G  P  +  L  L+ L+L  N   G++P AL  + L      
Sbjct: 462 LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL------ 515

Query: 226 NNRFSFELPDNIG 238
            +R SF   DN G
Sbjct: 516 -HRASFNFTDNAG 527

Length = 623

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 16/96 (16%), Positives = 23/96 (23%)

Query: 402 PPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPL 461
           P   +  P   P  P      +          + R P   +           P     P 
Sbjct: 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

Query: 462 PPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
           P P+  P     P +  P     +  A P    P  
Sbjct: 452 PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487

Length = 700

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 410 PVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPC 469
           P  PPPPP     +  P        P  PP  +P P      PPP       PPP P+  
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPP--APQPDDPNAAPPPPPADPNAPPPPPVDP 98

Query: 470 EKQPPPSPPP 479
              PPP+P P
Sbjct: 99  NAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 35/126 (27%), Positives = 42/126 (33%), Gaps = 29/126 (23%)

Query: 397  QSSPQPPVYSLPPPV--------------RPP-------PPPPPVPVSLPPPPTYCIHSP 435
            Q+SP  P    PP V              RPP       P PP  P + PP         
Sbjct: 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRL-----T 2784

Query: 436  RPP--PLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQP-PPSPPPYGPLPSITAIPYP 492
            RP    L     +   P  P +     L P + +P    P  P PPP    P+    P  
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG 2844

Query: 493  YPPPPL 498
             PPP L
Sbjct: 2845 PPPPSL 2850

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 33/105 (31%), Positives = 33/105 (31%), Gaps = 22/105 (20%)

Query: 402  PPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPP----PNLR 457
            P V SL     PPPP        PP P      P P  L S TP P  P       P L 
Sbjct: 2690 PTVGSLTSLADPPPP--------PPTP-----EPAPHALVSATPLPPGPAAARQASPALP 2736

Query: 458  LQPLPPPSP----IPCEKQPPPSPP-PYGPLPSITAIPYPYPPPP 497
              P PP  P     P     P  PP   GP            PP 
Sbjct: 2737 AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPR 2781

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 24/92 (26%), Positives = 28/92 (30%), Gaps = 2/92 (2%)

Query: 399 SPQPPV-YSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPI-LPPPPPNL 456
           +   P   + P P   P P P  P      P     SP P    S  P P     P P  
Sbjct: 419 AAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTA 478

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITA 488
              P PP +P P      P+ P         A
Sbjct: 479 APAPAPPAAPAPAAAPAAPAAPAAPAGADDAA 510

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 27/93 (29%), Positives = 29/93 (31%), Gaps = 3/93 (3%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
              P  P     P        PP P S          SP  P   SP P P  PPPPP  
Sbjct: 192 PGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP--PSPESPTNPSPPPGPAAPPPPPVQ 249

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAI 489
           ++ PL    P P         P  G      AI
Sbjct: 250 QVPPLSTAKPTP-PSASATPAPIGGITLDDDAI 281

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 28/104 (26%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 397 QSSPQPPVYSL--PPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPP 454
           Q   QPP  S     PV+ PP     P   P P        + P        P+  P  P
Sbjct: 89  QHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSP 148

Query: 455 NLRLQPLP-PPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
            +   P P   +P P ++   P+ P   P P   A P P    P
Sbjct: 149 QVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKP 192

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 24/87 (27%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 393 TLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPP 452
            L+ QS         PPP +  PPPP     LP P         PPP   PT T      
Sbjct: 509 NLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPP--PPTATQASSNA 566

Query: 453 PPNLRLQPLPPPSPIPCEKQPPPSPPP 479
           P  +     PPP         P     
Sbjct: 567 PAQIPADSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 18/100 (18%), Positives = 25/100 (25%), Gaps = 3/100 (3%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
            +P  P  + P    P       P     P      S    P  +  P P+  P      
Sbjct: 379 KTPARPEAAAPAAA-PVAQAAAAPAPAAAPAA--AASAPAAPPAAAPPAPVAAPAAAAPA 435

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             P   P+ +     PP    P      +   P P     
Sbjct: 436 AAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.8 bits (116), Expect = 6e-06
 Identities = 21/91 (23%), Positives = 27/91 (29%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
            +   P    PP      PP  +        +    S   P   +  P  +L P       
Sbjct: 2762 TTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPA 2821

Query: 459  QPLPPPSPIPCEKQPPPSPPPYGPLPSITAI 489
                 P P P   QP   PPP GP P    +
Sbjct: 2822 ASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852

Length = 3151

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPP--P 454
           Q  P  PV  + PP     PP   P + P P           P  SP PTP  PPP   P
Sbjct: 143 QPPPPAPVVMMQPPPPHAMPPASPPAAQPAP---------SAPASSPPPTPASPPPAKAP 193

Query: 455 NLRLQPLPPPSPIPCEKQPPPSPPPY 480
                PL  P      + P P  PP+
Sbjct: 194 KSSHPPLKSPMAGTFYRSPAPGEPPF 219

Length = 274

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 6/72 (8%)

Query: 413 PPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQ 472
           PPPPPP    + P P       P PPP  +  P P    P       P  P +P P    
Sbjct: 43  PPPPPPSTAAAAPAPAA-----PPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPP-PPV 96

Query: 473 PPPSPPPYGPLP 484
            P +PPP  P P
Sbjct: 97  DPNAPPPPAPEP 108

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 403 PVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSP---TPTPILPPPPPNLRLQ 459
           P    PPP    P  PP   SL P  +    +  P   F+P    P+P  P  PP     
Sbjct: 183 PGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPA--SI 240

Query: 460 PLPPPSPIPCEKQPPPSPPPYGPLP 484
           P PP  P+     PPP PPP   +P
Sbjct: 241 PAPPIPPVIQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 15/107 (14%)

Query: 397 QSSPQPPVYSLPPPVRPP---PPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPP 453
           Q+  QPP+    P   PP   P  P +   +PPPP      P+PP      P P   PPP
Sbjct: 225 QAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPP------PQPPQQQQQPPQPQAQPPP 278

Query: 454 PNLRLQPLPPPSPIPCEKQPPPSPPPYGP-LPSITAIPYPYPPPPLF 499
                Q  P P P   + Q  P PPP  P L  +   P      P F
Sbjct: 279 -----QNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQF 320

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 11/87 (12%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
            ++  P   + P    P   P   P ++   P       +  P     P  + P P    
Sbjct: 418 PAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA---PPAQAAPETVAIPVRVAPEPAV-- 472

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPL 483
                  P+P      P  +       
Sbjct: 473 ---ASAAPAPAA---APAAARLTPTEE 493

Length = 618

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
            P     + P P  PPPPPPP     PP P     +  PPP  +    P  PP  PN   
Sbjct: 46  PPPSTAAAAPAPAAPPPPPPPAA---PPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102

Query: 459 QPLPPPSPIP 468
            P P P  I 
Sbjct: 103 PPAPEPGRID 112

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 435 PRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPP---PYGPLPSITAIPY 491
           P PPP    T      P  P     P  PP+P P +    P PP   P  P P       
Sbjct: 41  PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100

Query: 492 PYPPPP 497
           P PP P
Sbjct: 101 PPPPAP 106

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 23/96 (23%), Positives = 27/96 (28%), Gaps = 7/96 (7%)

Query: 412 RPPPPPPPV-------PVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPP 464
             P P PP+        V+              P   SP+  P   P  P+    P  P 
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205

Query: 465 SPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY 500
           SP      P PS       P     P    PPP   
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPA 241

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 6/100 (6%)

Query: 399 SPQPPVY-SLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILP-PPPPNL 456
            P+P    +   P R  P   P P    PPP        PP   SP P      P     
Sbjct: 468 GPRPVAAAAAAAPARAAPAAAPAPADDDPPPW----EELPPEFASPAPAQPDAAPAGWVA 523

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPP 496
              P P  +      +     P   P P   A   P   P
Sbjct: 524 ESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAP 563

Length = 700

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 24/77 (31%), Positives = 27/77 (35%), Gaps = 14/77 (18%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
            S  P   + PP     P P PV    PP P      P   P   P P   +  PP    
Sbjct: 83  PSLDPATVA-PPNTPVEPEPAPVE---PPKPK-----PVEKPKPKPKPQQKVEAPPA--- 130

Query: 458 LQPLPPPSPIPCEKQPP 474
             P P P P+  EK  P
Sbjct: 131 --PKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 26/127 (20%), Positives = 38/127 (29%), Gaps = 28/127 (22%)

Query: 399  SPQPPV--YSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSP--------TPTPI 448
            +P PP    + PP     P    +  S    P+    +  P  + +P        +P   
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGP 2827

Query: 449  LPPPPPNLRLQPLPPPSPI--------------PCEKQPPPSPPPYGPL----PSITAIP 490
            LPPP       P PPP P                  ++PP   P   P     P +  + 
Sbjct: 2828 LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887

Query: 491  YPYPPPP 497
             P     
Sbjct: 2888 RPAVSRS 2894

Length = 3151

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 46.2 bits (109), Expect = 4e-05
 Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 385 LSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPT 444
              L+   +L  Q  P P     P       P PP P S  P  ++  H P PP   +  
Sbjct: 223 PLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSH--HGPGPPMPHALQ 280

Query: 445 PTPILPPPPPNLRLQPL------PPPSPIPCEKQP------------PPSPPPYGPLPSI 486
             P+    P +   QP        PP P+P + QP            P  PP   PLP  
Sbjct: 281 QGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPA 340

Query: 487 TAIPYPYPPP 496
            ++P+  PPP
Sbjct: 341 PSMPHIKPPP 350

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 22/95 (23%), Positives = 28/95 (29%), Gaps = 15/95 (15%)

Query: 408 PPPVRPPPPPP------PVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPL 461
           P P +P    P      P P + P         P+ P   + TP    PP PP     P+
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATP----PPVPPRPVAPPV 421

Query: 462 PPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPP 496
           P           P       P+        P PP 
Sbjct: 422 PHTPE-----SAPKLTRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 29/117 (24%), Positives = 33/117 (28%), Gaps = 18/117 (15%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSP---------RPPPLFSPTPTPIL 449
            P P ++   P   P PP  P     P  P   + S          R      P P   +
Sbjct: 120 QPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQV 179

Query: 450 PP---PPPNLRLQPLPPPSPIPCEKQPPPSPPPYG------PLPSITAIPYPYPPPP 497
            P   PP         PP   P   QPP   P         P PS      P PP  
Sbjct: 180 LPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQL 236

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.9 bits (109), Expect = 5e-05
 Identities = 34/117 (29%), Positives = 40/117 (34%), Gaps = 10/117 (8%)

Query: 392 NTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPP 451
           +TL   S  +    + P P  P PPPP  P + PPP      S    P+ SP P P   P
Sbjct: 93  STLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASP 152

Query: 452 PPPNLRLQPLP----------PPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
           P        +            P   P E    PS PP  P PS         PP  
Sbjct: 153 PAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRR 209

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.7 bits (108), Expect = 6e-05
 Identities = 35/135 (25%), Positives = 42/135 (31%), Gaps = 39/135 (28%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLF-------------SPTP 445
            +P P     P P  PP P    P  LP  P      P  P +              +  P
Sbjct: 2495 APDPGGGGPPDPDAPPAPSRLAPAILPDEPV---GEPVHPRMLTWIRGLEELASDDAGDP 2551

Query: 446  TPILPP-PPPNLRLQPLPPPSPIPCEKQP-----------PPSP-----------PPYGP 482
             P LPP  PP    + +PPP P P   +P           PP              P GP
Sbjct: 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGP 2611

Query: 483  LPSITAIPYPYPPPP 497
             P     P  + P P
Sbjct: 2612 APPSPLPPDTHAPDP 2626

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.5 bits (108), Expect = 6e-05
 Identities = 23/116 (19%), Positives = 25/116 (21%), Gaps = 14/116 (12%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPR-----PPPLFSPTPTPILPP 451
              P  P    P P    PPP P P             P      P    SP        
Sbjct: 108 PPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAA 167

Query: 452 PPPNLRL---------QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
                 L         +    P   P    PP +  P  P  S         P P 
Sbjct: 168 SSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPA 223

Length = 1352

>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 27/100 (27%), Positives = 33/100 (33%), Gaps = 1/100 (1%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
            P P    L     PPP    +P++   P      S   P   S  P+ +      + RL
Sbjct: 359 LPPPTKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKHHRL 418

Query: 459 QPLPPPSPIPCEKQPPPSPPPYGP-LPSITAIPYPYPPPP 497
            P   P P      P PS P   P  P   A P    PP 
Sbjct: 419 PPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458

Tymoviruses are single stranded RNA viruses. This family includes a protein of unknown function that has been named based on its molecular weight. Tymoviruses such as the ononis yellow mosaic tymovirus encode only three proteins. Of these two are overlapping this protein overlaps a larger ORF that is thought to be the polymerase. Length = 458

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 30/108 (27%), Positives = 35/108 (32%), Gaps = 13/108 (12%)

Query: 398 SSPQPPVYSLPPP-VRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
             PQ   Y  PP   +    PPP   S P         P   P    +  P  P P    
Sbjct: 146 QVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGL---YPEESPYQPQSYPPNEPLPSS-- 200

Query: 457 RLQPLPPPSPIPCEKQ----PPPSPPPYGP--LPSITAIPYPYPPPPL 498
            +   PP S  P  +Q    P PSP  YG       +  P    PPP 
Sbjct: 201 -MAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPS 247

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 30/121 (24%), Positives = 35/121 (28%), Gaps = 14/121 (11%)

Query: 392 NTLKCQSSPQPPVYSLPPPVRP-PPPPPPVPVSLPPPPTYCIHSP--RPPPLF------S 442
           +  +  +  Q P Y  PPP +P PPP        P PP         + PP         
Sbjct: 109 SVPQQPTPQQEPYY--PPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNP 166

Query: 443 PTPTPILPPPPP-NLRLQPLPPPSPIPCEKQPPPSPP--PYGPLPSITAIPYPYPPPPLF 499
           P      P          P  P S  P E  P       PY   P       P  P P  
Sbjct: 167 PPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYM 226

Query: 500 Y 500
           Y
Sbjct: 227 Y 227

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 399 SPQPPVYSLPPPVRPPPPP--PPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           +  P   + P    P P P  PP      PPP  C    RP P   P+ T   PP PP  
Sbjct: 97  ACAPAAPA-PAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPS-TRQCPPAPPLP 154

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYP 494
             +P P   PI    Q PP   P    P+I   P   P
Sbjct: 155 TPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASP 192

Length = 280

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 28/116 (24%), Positives = 34/116 (29%), Gaps = 18/116 (15%)

Query: 399 SPQPPVYSLPPPVRPPPPPPP---VPVSLPP---PPTYCIHSPRPPPLFSP----TPTPI 448
            P P   S  P  +     PP    P  LPP          +P+  P + P     P P 
Sbjct: 74  PPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPA 133

Query: 449 LPPPPPNLRLQPLPP-------PSPIPCEKQPPPSPPPYGPLPSITAIPY-PYPPP 496
             P     +  P  P       P   P  +Q PP      P  S       PY P 
Sbjct: 134 QQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQ 189

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 30/96 (31%), Positives = 33/96 (34%), Gaps = 19/96 (19%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           Q+ P  PV    P   P P P PVP S PPPP   + S  P     P P P   PP P  
Sbjct: 404 QTRPAAPV----PASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAP-- 457

Query: 457 RLQPLPPPSPIPCEKQP----------PPSPPPYGP 482
                 P    P +             PP PP    
Sbjct: 458 ---ATEPAPDDPDDATRKALDALRERRPPEPPGADL 490

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 29/128 (22%), Positives = 30/128 (23%), Gaps = 31/128 (24%)

Query: 401  QPPVYSLPPPVRPPPPPPPVPVSLP-----------PPPTYCIHSPRPP----------- 438
              P   LPP    P PPPP P               PPP      P P            
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 439  --------PLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIP 490
                    P   P       P   +L     PPP P   E  P          P   A  
Sbjct: 2671 GRAAQASSPPQRPRR-RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAAR 2729

Query: 491  YPYPPPPL 498
               P  P 
Sbjct: 2730 QASPALPA 2737

Length = 3151

>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 39/122 (31%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 382 RMFLSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLF 441
           R + SRL   +    + S Q P+   P       P P  P   P  P   +  P P P  
Sbjct: 60  RYYQSRLKANSACMQRPSGQSPLAPSPAC---AAPAPACPACAPAAPAPAVTCPAPAPAC 116

Query: 442 SPTPTPILPPP---PPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPY----P 494
            P   P  PPP   P   R  P  PPS   C    PP+PP   P P+  A P       P
Sbjct: 117 PPATAPTCPPPAVCPAPARPAPACPPSTRQC----PPAPPLPTPKPAPAAKPIFLHNQLP 172

Query: 495 PP 496
           PP
Sbjct: 173 PP 174

Length = 280

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 25/102 (24%), Positives = 30/102 (29%), Gaps = 13/102 (12%)

Query: 402 PPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPT--------PTPILPPPP 453
           PP  +  P        PP        P         PP  +P         P    PP  
Sbjct: 710 PPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 769

Query: 454 PNLRLQPLPPPSPIPCEKQ-----PPPSPPPYGPLPSITAIP 490
                 P PPP   P  +Q     P P PPP     S+  +P
Sbjct: 770 APGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMP 811

Length = 991

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 22/98 (22%), Positives = 28/98 (28%), Gaps = 10/98 (10%)

Query: 400 PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQ 459
           P P     PPPV   P P P P   P      + +       +PT +P   PP       
Sbjct: 51  PSPQA---PPPVAQLPQPLPQP--PPTQALQALPAGDQQQHNTPTGSPAANPPA-----T 100

Query: 460 PLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              P  P     Q  P       +P +        P  
Sbjct: 101 FALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLD 138

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 401 QPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQP 460
             P+ +L P  RP      VP +  PP       P P P+  P  +  +  P  +  +  
Sbjct: 123 ADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMAIAVPAIDTPVTL 182

Query: 461 LPPPSPIPCEKQPPPSPPPYGPLPSITAIPYP 492
             PP+P P        PPP  P PS   +   
Sbjct: 183 ELPPAPQP--------PPPVVPQPSTMVVHRR 206

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 400  PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQ 459
            P PP    PP   P P        LPP P     +    P     P     P  P    +
Sbjct: 2701 PPPP----PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR 2756

Query: 460  PLPPPSPIPCEKQPPPSPPPYGPLPSITAIP 490
            P  PP+        PP+ P  GP   +T   
Sbjct: 2757 PARPPTTAGPPAPAPPAAPAAGPPRRLTRPA 2787

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 26/100 (26%), Positives = 32/100 (32%), Gaps = 3/100 (3%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTP-TPILPPPPPNLR 457
            +P+P  ++L      PP P     + P  P      P   P    TP  P  P  PP   
Sbjct: 2707 TPEPAPHALVSATPLPPGPAAARQASPALPAAPA--PPAVPAGPATPGGPARPARPPTTA 2764

Query: 458  LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              P P P   P    P     P     S +    P P  P
Sbjct: 2765 GPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDP 2804

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 25/99 (25%), Positives = 31/99 (31%), Gaps = 2/99 (2%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
           +  P   +  P     P P   P   P P      +P  P   +P      PPP      
Sbjct: 407 AAAPAPAAAAPAAAAAPAPAAAPQPAPAPAP--APAPPSPAGNAPAGGAPSPPPAAAPSA 464

Query: 459 QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
           QP P P+  P     P   PP  P P+        P  P
Sbjct: 465 QPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP 503

Length = 824

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 34/109 (31%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPP--------PLFSPTPTPI 448
           QSS   P   +P  ++  P     P S PP P     S  PP        P     P+  
Sbjct: 265 QSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQS 324

Query: 449 LPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              P    R QPLPP   +P  K PP +P P  P  S    P+   P P
Sbjct: 325 ALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSP 373

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 20/107 (18%), Positives = 22/107 (20%), Gaps = 5/107 (4%)

Query: 395 KCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPP-PTYCIHSPRPPPLFSPTPTPILPP-- 451
             Q   Q P   +       P P   P   PP  P              P P        
Sbjct: 95  SHQYPSQLPPQQVQSVP-QQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQY 153

Query: 452 -PPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             PP        PP       Q     P   P    +  P    P  
Sbjct: 154 QSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSS 200

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 25/104 (24%), Positives = 32/104 (30%), Gaps = 5/104 (4%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
             +P   V +  PP   P  P P        P    +  + PP    +      P     
Sbjct: 62  ADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPY 121

Query: 457 RL---QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                QP PPP+  P  +QP   PPP  P       P   P   
Sbjct: 122 YPPPSQPQPPPAQQPQAQQPQ--PPPQVPQQQQYQSPPQQPQYQ 163

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 26/106 (24%), Positives = 29/106 (27%), Gaps = 6/106 (5%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           Q  P+ P    PP   P     P   +    P         PP  +P         P   
Sbjct: 695 QPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRA 754

Query: 457 R---LQPLPPPSPIPCEKQPPPSPPPYG---PLPSITAIPYPYPPP 496
           R     P     P      P P PPP     P       P P PPP
Sbjct: 755 RPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPP 800

Length = 991

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 37/112 (33%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 398 SSPQPPVYSLPP-----------PVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPT 446
           S   PP ++L P           PV P  P  PVP      PT       P P   P   
Sbjct: 43  SQQHPPTHTLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQP 102

Query: 447 PILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
             L PP P   +QP PP  PIP    P P  PP  P+  +  +P   P  PL
Sbjct: 103 QPLQPPQPQQPMQPQPPVHPIP----PLPPQPPLPPMFPMQPLPPLLPDLPL 150

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.1 bits (105), Expect = 2e-04
 Identities = 17/110 (15%), Positives = 21/110 (19%), Gaps = 8/110 (7%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPP--- 453
              P+ P  S  P         P     PP        P   P  +P             
Sbjct: 365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLA 424

Query: 454 --PNLRLQP--LPPPSPIPCEKQPP-PSPPPYGPLPSITAIPYPYPPPPL 498
               L+            P       P       L S+   P      P 
Sbjct: 425 ARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPA 474

Length = 647

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 401 QPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQP 460
            P     P  V+PPP P   P   P P       P PP      P  I   P P  + +P
Sbjct: 54  APADLEPPQAVQPPPEPVVEPEPEPEP------IPEPPK---EAPVVI---PKPEPKPKP 101

Query: 461 LPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPP 496
            P P P P +K          P+    A P+    P
Sbjct: 102 KPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAP 137

Length = 246

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 399  SPQPPVYSLPPPV----RPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPP--- 451
            +P PP     PP     +PPPPPPP P     P T    +  P           L P   
Sbjct: 2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV 2972

Query: 452  PPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITA 488
              P  R+    P    P        P     L  +++
Sbjct: 2973 AVPRFRVPQPAPSREAP---ASSTPPLTGHSLSRVSS 3006

Length = 3151

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 56/186 (30%), Positives = 86/186 (46%), Gaps = 9/186 (4%)

Query: 136 SYLPEELGLLAD-IALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLP 194
           + +P  +GLL   +    ++ N+   +LP     L  L  LDLS N  +   P ++  L 
Sbjct: 129 TDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS 186

Query: 195 KLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFH 253
            L  LDL  N+     P+      L+ + ++NN    EL  ++ N   +S L L+NNK  
Sbjct: 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL- 244

Query: 254 GCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMT 313
             LP S GN+S  L  + L+NN + S     +G L N+   D+S N L   LP     + 
Sbjct: 245 EDLPESIGNLS-NLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSLSNALPLIALLLL 301

Query: 314 SLQQLN 319
            L+ L 
Sbjct: 302 LLELLL 307

Length = 394

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 25/104 (24%), Positives = 31/104 (29%), Gaps = 3/104 (2%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTP---TPILPPPP 453
            +  +    + PPP      P     S P      +    P    SPTP   +   PPPP
Sbjct: 60  AACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPP 119

Query: 454 PNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                 P P P+P   E   P   P   P  S  A         
Sbjct: 120 TPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVA 163

Length = 1352

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 29/135 (21%), Positives = 38/135 (28%), Gaps = 10/135 (7%)

Query: 370 RDKPRQRSTLQCRMFLSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPT 429
              P Q   ++   +         +  Q SP      LP    P    PP     P  P 
Sbjct: 648 FPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPP 707

Query: 430 YCIHSPRPPPLFSPTPTPILPPP-------PPNLRLQPLPPPSPIPCEKQPPPSPPPYGP 482
                    P  +       PP        PP        PP+  P   +PP + P    
Sbjct: 708 AAPPGRAQRPAAATGRAR--PPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRAR 765

Query: 483 LPSIT-AIPYPYPPP 496
            P+     P P PPP
Sbjct: 766 PPAAAPGAPTPQPPP 780

Length = 991

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 410 PVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPC 469
           P+ PP PP PV       P   + +P P    +  P P    P P       PPPS  P 
Sbjct: 81  PLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAP----AAAPPPSDPP- 135

Query: 470 EKQPPPSP 477
             QPP +P
Sbjct: 136 --QPPRAP 141

Length = 141

>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 408 PPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPI 467
           P        P P   +  P      H     PL + +     P  PP      + P + I
Sbjct: 112 PYLPNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGI 171

Query: 468 PCEKQPPPSPPPYGPLP-SITAIPYPYP 494
           P    PP   P Y   P  +  IP+P  
Sbjct: 172 PRPPHPPDISPFYPLSPGGVGQIPHPLG 199

This region tends to appear at the N-terminus of proteins also containing DNA-binding HMG (high mobility group) boxes (pfam00505) and appears to bind the armadillo repeat of CTNNB1 (beta-catenin), forming a stable complex. Signaling by Wnt through TCF/LCF is involved in developmental patterning, induction of neural tissues, cell fate decisions and stem cell differentiation. Isoforms of HMG T-cell factors lacking the N-terminal CTNNB1-binding domain cannot fulfill their role as transcriptional activators in T-cell differentiation. Length = 200

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 42.3 bits (99), Expect = 4e-04
 Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 5/85 (5%)

Query: 413 PPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQ 472
           PP PP   P    P      H  R      PT  P +  P     +Q  P   P    +Q
Sbjct: 173 PPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQN-PAQQPQQQPQQ 231

Query: 473 PPPSPPPYGPLPSITAIPYPYPPPP 497
            P  P       +    P   PP  
Sbjct: 232 QPVQPAQQPTPQN----PAQQPPQT 252

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 24/97 (24%), Positives = 27/97 (27%), Gaps = 15/97 (15%)

Query: 397 QSSPQPPV-----YSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPP 451
              PQ P             + PPPPP  P     PP         PP   P   P   P
Sbjct: 234 PQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPP----QPQAQPP---PQNQPTPHP 286

Query: 452 PPP---NLRLQPLPPPSPIPCEKQPPPSPPPYGPLPS 485
             P   N  L P   P  +P  +QP            
Sbjct: 287 GLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQ 323

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 18/100 (18%), Positives = 25/100 (25%), Gaps = 9/100 (9%)

Query: 402 PPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPIL----PPPPPNLR 457
           PP  + P   +PPP   P  VS P  P        P P        +             
Sbjct: 53  PPAAAAPAAAQPPPAAAPAAVSRPAAPA-----AEPAPWLVEHAKRLTAQREQLVARAAA 107

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                  +P    ++            +  A P P  P  
Sbjct: 108 PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD 147

Length = 484

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 29/98 (29%), Positives = 33/98 (33%), Gaps = 11/98 (11%)

Query: 401 QPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQP 460
             P   LP P + P  PP  P  LP  P        PP      P      PPP  +   
Sbjct: 214 VQPQQFLPAPSQAPAQPPL-PPQLPQQP--------PPLQQPQFPGLSQQMPPPPPQPPQ 264

Query: 461 LPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
                P P + QPPP   P  P P +        PPP 
Sbjct: 265 QQQQPPQP-QAQPPPQNQP-TPHPGLPQGQNAPLPPPQ 300

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 394 LKCQSSPQPPVYSLPPPVRPPP---PPPPVPVSLPPPPTYCIHSPRPPPL-FSPTPTPIL 449
           L  QS   PP    P P    P   PPPP    L   PT+   S  PPPL   P   P+ 
Sbjct: 357 LPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQ 416

Query: 450 PPP--PPNL-RLQPLPPPSPIPCEKQPP--PSPPPYGPLPSITAIPYPYPPPP 497
             P  PP L + Q LPP +           P   P+   P  +       PPP
Sbjct: 417 SVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPP 469

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 26/105 (24%), Positives = 32/105 (30%), Gaps = 7/105 (6%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
           SS    V   P P R P P  P P + P  P       RP P  +P+        P   R
Sbjct: 335 SSRGAAVSPGPSPSRSPSPSRPPPPADPSSP-----RKRPRPSRAPSSPAASAGRPTRRR 389

Query: 458 LQPLPPPSPIPCEKQP--PPSPPPYGPLPSITAIPYPYPPPPLFY 500
            +          +     P   P   PL +  A    Y   PL  
Sbjct: 390 ARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLT 434

Length = 1352

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 17/81 (20%), Positives = 21/81 (25%), Gaps = 14/81 (17%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
            +P    +  P P   P  PPP      PP       P  P    P P P  P       
Sbjct: 382 PAPPSAAWGAPTP-AAPAAPPPAAAPPVPPAA-----PARPAAARPAPAPAPPAAAA--- 432

Query: 458 LQPLPPPSPIPCEKQPPPSPP 478
                PP+          +  
Sbjct: 433 -----PPARSADPAAAASAGD 448

Length = 576

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 30/84 (35%), Positives = 34/84 (40%), Gaps = 8/84 (9%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
           S   PP  + P    P   P P  V  PPP +       PPP     P P   PP P   
Sbjct: 27  SCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVW--VLPPPSEPAAPPPDPEPPVP--- 81

Query: 458 LQPLPPPSPI--PCEKQPPPSPPP 479
             P  PPSP+  P   + PP PPP
Sbjct: 82  -GPAGPPSPLAPPAPARKPPLPPP 104

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 403 PVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLP 462
           P    P       P  PVP S+P P    + +  PPP  +P P+    P   +    P P
Sbjct: 394 PFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSA--EPGSDD---GPAP 448

Query: 463 PPSPIPCEKQPPPSPP 478
           PP   P      P+P 
Sbjct: 449 PPERQPPAPATEPAPD 464

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 17/101 (16%), Positives = 23/101 (22%), Gaps = 14/101 (13%)

Query: 398 SSPQPPVYSLPPPVRPPPPPP-PVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           ++          P RP    P   PV+          +P   P            PP   
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAP----APAAAP---AAAASAPAAPPA-- 419

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                PP          P + P   P   +   P P     
Sbjct: 420 ---AAPPAPVAAPAAAAPAAAPAAAPAA-VALAPAPPAQAA 456

Length = 618

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 38/114 (33%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 397 QSSPQPPVYSLPPPVRPP---P-PPPPVPVSLPPPPTYCIHS------PRPPPLFSPTPT 446
             S  PP  S   P +PP   P PP P    + PPPT  I          PP L  P+P 
Sbjct: 315 PHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPF 374

Query: 447 PILP---PPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
           P +P   PPPP L+     P S +P    P   PPP   +P    +      PP
Sbjct: 375 PQMPSNLPPPPALK-----PLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPP 423

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.0 bits (98), Expect = 7e-04
 Identities = 31/116 (26%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 394 LKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPP--PPTYC--IHSPRPPPLFSPTPTPIL 449
           L+ Q  P   V          PPP P   ++PP   P        P+ P   S    P L
Sbjct: 173 LQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSL 232

Query: 450 PP---PPPNLRLQPLPPPSPIPCEKQPP---PSPPPYGPLPSITAIPYPYPPPPLF 499
            P   P P+  LQP       P    P    P    +GP P    +P+     P+F
Sbjct: 233 HPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPP---MPHALQQGPVF 285

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 31/89 (34%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 405 YSLPPPVRPPPPPPPVPVS--------LPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           Y  P    P PP PPV            PPPP     +P PPP   P   P   PPPP  
Sbjct: 50  YEEPYDPTPYPPSPPVSDPRYYPNSNYFPPPPG---STPVPPPGPQPGYNPADYPPPPGA 106

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPS 485
              P   P P      P P   PY P P 
Sbjct: 107 VPPPQNYPYP------PGPGQDPYAPRPR 129

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 21/77 (27%), Positives = 25/77 (32%), Gaps = 3/77 (3%)

Query: 392 NTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPP 451
           NT K    PQ       P    P P    P   PPPP             +P   P    
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSN---APAQIPADSS 575

Query: 452 PPPNLRLQPLPPPSPIP 468
           PPP +  +P P P+   
Sbjct: 576 PPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 8e-04
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 434 SPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPP---PSPPPYGPLPSITAIP 490
           +P PP      PTP  P  PP     P+PP +P       P   P+PP     P+ +A P
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 491 YPYP 494
               
Sbjct: 441 AAAA 444

Length = 576

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 9e-04
 Identities = 18/68 (26%), Positives = 21/68 (30%), Gaps = 9/68 (13%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
           ++  PP      PVR    PPPVP     PP      P  P          +P       
Sbjct: 394 AANIPPK----EPVRETATPPPVPPRPVAPPV-----PHTPESAPKLTRAAIPVDEKPKY 444

Query: 458 LQPLPPPS 465
             P PP  
Sbjct: 445 TPPAPPKE 452

Length = 585

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 41.7 bits (98), Expect = 9e-04
 Identities = 23/90 (25%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 397 QSSPQPPVYSLPPPVRPPPPP----PPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPP 452
           Q    P +    PP  P PP     PP P + PPP     + P P P         LPPP
Sbjct: 244 QQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPP----QNQPTPHPGLPQGQNAPLPPP 299

Query: 453 PPNLRLQPLPPPSPIPCEKQPPPSPPPYGP 482
                L  +  P       Q          
Sbjct: 300 QQPQLLPLVQQPQGQQRGPQFREQLVQLSQ 329

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 28/123 (22%)

Query: 402 PPVYSLPPPVRPPPPPPPVPVSLPPPP---------TYCIHSPRPPPL-FSPTPTPILPP 451
              +  PP ++ P P P +P +LPPPP         T+   S  PPPL   P   P+   
Sbjct: 359 NQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSV 418

Query: 452 P------------PPNLRLQP------LPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPY 493
           P            PP     P       PP SP           P  GP PS+       
Sbjct: 419 PAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAA 478

Query: 494 PPP 496
           PP 
Sbjct: 479 PPR 481

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 38.9 bits (91), Expect = 9e-04
 Identities = 25/69 (36%), Positives = 26/69 (37%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
             P P     PP V  PPP   V V  PP           PP+  P   P    PP   R
Sbjct: 38  DDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPAR 97

Query: 458 LQPLPPPSP 466
             PLPPP P
Sbjct: 98  KPPLPPPRP 106

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 9e-04
 Identities = 17/44 (38%), Positives = 19/44 (43%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF 206
             +F  L  L  LDLS N      P    GLP L+ LDL  N  
Sbjct: 17  DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 19/98 (19%), Positives = 25/98 (25%), Gaps = 8/98 (8%)

Query: 408 PPPVRPPPPPPPV---PVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPP 464
             P     P  P    P + P        +P   P  + +     P   P   +      
Sbjct: 373 AAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA 432

Query: 465 SPIPCEKQPP-----PSPPPYGPLPSITAIPYPYPPPP 497
           +P       P        PP    P   AIP    P P
Sbjct: 433 APAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEP 470

Length = 618

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 11/73 (15%)

Query: 408 PPPVRPPP-PPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSP 466
            P + P    PP  PV   P P         PP   P P    P P P  + +   PP+P
Sbjct: 82  APSLDPATVAPPNTPVEPEPAPV-------EPP--KPKPVEK-PKPKPKPQQKVEAPPAP 131

Query: 467 IPCEKQPPPSPPP 479
            P  K        
Sbjct: 132 KPEPKPVVEEKAA 144

Length = 226

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 23/99 (23%), Positives = 26/99 (26%), Gaps = 8/99 (8%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
           S  QP  Y  PP    P      P     PP+   + P  P  +          P     
Sbjct: 184 SPYQPQSY--PPNEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGG--RPNSGFP 239

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPP 496
               PPPS           PP  G   S       Y P 
Sbjct: 240 SGQQPPPSQGQEGYGYSGPPPSKGNHGS----VASYAPQ 274

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 24/76 (31%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 423 SLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGP 482
           S   PP        PP    P P  +  PPP +      PP  P      P P  P    
Sbjct: 27  SCFSPPESAHPDDPPPV-GDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAG 85

Query: 483 LPSITAIPYPYPPPPL 498
            PS  A P P   PPL
Sbjct: 86  PPSPLAPPAPARKPPL 101

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 36/89 (40%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 413 PPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEK- 471
           PPPPP P   ++PPPP     +  PPP   P    I PPPPP      +PPP P+P    
Sbjct: 61  PPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPG 120

Query: 472 -QPPPSPPPYGPLPSITAIPYPYPPPPLF 499
             PPP P P  P           PPPP F
Sbjct: 121 VPPPPPPFPGAPGIPPPPPGMGSPPPPPF 149

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 13/70 (18%), Positives = 17/70 (24%), Gaps = 3/70 (4%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
            S+      +   P + P      P  +PP P      P P    S         P    
Sbjct: 385 PSTRPKAAAAANIPPKEPVRETATPPPVPPRPV---APPVPHTPESAPKLTRAAIPVDEK 441

Query: 457 RLQPLPPPSP 466
                P P  
Sbjct: 442 PKYTPPAPPK 451

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 25/104 (24%), Positives = 29/104 (27%), Gaps = 11/104 (10%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
              P       P  PPP P P   + P             P  +P  TP           
Sbjct: 667 DGWPAKAGGAAPAAPPPAPAPAAPAAPAGA------APAQPAPAPAATPPAGQADDPAAQ 720

Query: 459 QPLP-----PPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
            P        PSP   +  P P  P   P P+      P PP P
Sbjct: 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 23/102 (22%), Positives = 29/102 (28%), Gaps = 1/102 (0%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
            S P         P  P  P  P P      P     +P P           +  P  + 
Sbjct: 605 SSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPL-PSITAIPYPYPPPP 497
                P  +       PPP+P P  P  P+  A   P P P 
Sbjct: 665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 23/102 (22%), Positives = 28/102 (27%), Gaps = 13/102 (12%)

Query: 397 QSSPQPPVYSLP-PPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPN 455
             +   P    P P   PP      P + PP           P   +  P P+ P P   
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAA---QGASAPSPAADDPVPLPPEPDDP 748

Query: 456 LRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                 P   P      PP   P   P  +    P P PP  
Sbjct: 749 PDPAGAPAQPP-----PPPAPAPAAAPAAA----PPPSPPSE 781

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 23/106 (21%), Positives = 29/106 (27%), Gaps = 10/106 (9%)

Query: 397 QSSPQPPVYSLPPPVRPPP---PPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPP 453
           + +  P         RP P     PP   + P  P       + PP     P     P  
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQP------VQQPPEAQVPPQHAPRPAQ 123

Query: 454 PNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLF 499
           P  +    P   P P +    P  P   P P       P P    F
Sbjct: 124 PAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQP-VHSAPQPAQQAF 168

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 392 NTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPP 451
           + +   S+P  P  +  P   P P  P  P +     T     P PPP  +  P P+   
Sbjct: 366 SEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATT-----PSPPPAKASPPIPVPAE 420

Query: 452 PPPNLRLQPLPPPSPIPCEKQPPPS 476
           P         P P+P       PPS
Sbjct: 421 PTE-------PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 32/89 (35%), Positives = 33/89 (37%), Gaps = 15/89 (16%)

Query: 410 PVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPC 469
           P    PPPP     LPP       S    P  S TP   LP    N     LP PSP   
Sbjct: 183 PGAIQPPPPSSLPGLPPG------SSSLAPSASSTPGNRLPRVSFN---PFLPGPSP--- 230

Query: 470 EKQPPPSPPPYGPLPSI-TAIPYPYPPPP 497
               P +PP   P P I   I Y  PPP 
Sbjct: 231 --AQPSAPPASIPAPPIPPVIQYVAPPPV 257

Length = 582

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 22/102 (21%), Positives = 29/102 (28%), Gaps = 12/102 (11%)

Query: 401 QPPVYSLPPPVRPPPPPPP------VPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPP 454
           +     +P   +  P  PP      V       P         P   +P  TP+ P P P
Sbjct: 50  RDEPDMMPAATQALPTQPPEGAAEAVRAGDAAAP------SLDPATVAPPNTPVEPEPAP 103

Query: 455 NLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPP 496
               +P P   P P  K       P  P P    +      P
Sbjct: 104 VEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 26/131 (19%), Positives = 33/131 (25%), Gaps = 27/131 (20%)

Query: 397 QSSPQPPVYSLPP---------PVRP-PPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPT 446
           +  PQ   Y+ P          PV+P  P   P        P Y     +P       P 
Sbjct: 378 EGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPA 437

Query: 447 PILP-------PPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPP---- 495
           P  P                P          +QP    P Y     +   P   P     
Sbjct: 438 PEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVE 497

Query: 496 ------PPLFY 500
                 PPL+Y
Sbjct: 498 ETKPARPPLYY 508

Length = 1355

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 30/91 (32%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 406 SLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPS 465
            L  P   P P P  P   P PPT     P P P     P P   P P     +P P P 
Sbjct: 48  VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTP-----PKPKEKPKPEKKPKKPKPKPK 102

Query: 466 PIPCEKQPPPSPPPYGPLPSITAIPYPYPPP 496
           P P  K      P     PS TA   P  P 
Sbjct: 103 PKPKPKPKVKPQPKPKKPPSKTAAKAPAAPN 133

Length = 244

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 398 SSPQPPVYSLPPPVRP---PPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPP--P 452
           ++PQP   +   P          P  P S   P      +P    +  P   P+ PP   
Sbjct: 388 AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAG----TPPTVSVDPPAAVPVNPPSTA 443

Query: 453 PPNLRLQPLPPPSPIPCEKQPPPSPPPYGPL 483
           P  +R         IP  K     P    P+
Sbjct: 444 PQAVRPAQFKEEKKIPVSKVSSLGPSTLRPI 474

Length = 614

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 27/116 (23%), Positives = 33/116 (28%), Gaps = 21/116 (18%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPV-----SLPP-----PPTYCIHSPRPP-----PLFS 442
           S+  PP+  +P        P   PV     SLPP     P +     P        P  S
Sbjct: 400 SAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTS 459

Query: 443 PTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
                I PPP         PP +           PP      S        P PP+
Sbjct: 460 GGLPAIGPPPSLPTSTPAAPPRA------SSGSQPPGSALPSSGGCAGPGPPLPPI 509

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 11/71 (15%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFS-PTPTPILPPPPPN 455
             +P  P    P PV PP    P P    PPPT    +P  PP  +   P P   PPP +
Sbjct: 81  PLTPPAP----PEPVTPPTAQSPAPAVPTPPPTS---TPAVPPAPAAAVPAPAAAPPPSD 133

Query: 456 LRLQPLPPPSP 466
               P PP +P
Sbjct: 134 ---PPQPPRAP 141

Length = 141

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 15/56 (26%), Positives = 20/56 (35%)

Query: 422 VSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSP 477
              PP   +   +P  P    P   P +PP  P       P P+P P     PP+ 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPAR 436

Length = 576

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 290 NVTVFDVSYNKLMGELPDTIAE-MTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           N+   D+S N+L   +PD   + + +L+ L+++ N L+   P++   LP+LR+     N
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 267 LNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML 325
           L  + L+NN L   +P+     L N+ V D+S N L    P+  + + SL+ L+++ N L
Sbjct: 2   LKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 40/93 (43%), Positives = 45/93 (48%), Gaps = 9/93 (9%)

Query: 413 PPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQ 472
           PPPPP P  V +PPPP     +  PPP   P    I PPPPP   +  +PPP P+P    
Sbjct: 13  PPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAI-PPPPPLPGVAGIPPPPPLPGATA 71

Query: 473 PPPSP--------PPYGPLPSITAIPYPYPPPP 497
            PP P        PP  PLP    IP P PP P
Sbjct: 72  IPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLP 104

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 22/80 (27%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
                V   P     P P PP     PP          PP    P P     P     + 
Sbjct: 43  LLAAKVLEAPTEEPQPEPEPPEEQPKPPTEP-----ETPPEPTPPKPKEKPKPEKKPKKP 97

Query: 459 QPLPPPSPIPCEKQPP-PSP 477
           +P P P P P  K  P P P
Sbjct: 98  KPKPKPKPKPKPKVKPQPKP 117

Length = 244

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 17/93 (18%), Positives = 22/93 (23%), Gaps = 16/93 (17%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           +  P P      PP     P  P   + P        +  P              P   L
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAA-----AAAPAA----------GGPAAAL 433

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAI 489
              P    +       P  +P P   L S   I
Sbjct: 434 AAVPDAAAAAAA-PPAPAAAPQPAVRLNSFEDI 465

Length = 598

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 21/100 (21%), Positives = 24/100 (24%), Gaps = 5/100 (5%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
           + P P       P  P P   P       P         P     PT  P  P       
Sbjct: 96  APPPPHARRTSEPELPRPGRRPYE-GYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPE 154

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
               P  +     +Q     PP  P  S    P  Y P  
Sbjct: 155 PGAWPRAADDYGWQQQRLGFPPRAPYAS----PASYAPEQ 190

Length = 617

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 20/36 (55%), Positives = 20/36 (55%), Gaps = 10/36 (27%)

Query: 406 SLPPPVRPPPPPPP--VPVSLPPPPTYCIHSPRPPP 439
           SLPP   PPPPPPP   P S PPPP        PPP
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQPPPP--------PPP 30

Length = 2365

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 23/68 (33%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 414 PPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQP 473
             PPP   V L P P Y       PP + P P     PP       P PPP        P
Sbjct: 46  YYPPPGAYVHLEPLPAY--GQYAAPPPYGPPPPYYPAPPGVY----PTPPPPNSGYMADP 99

Query: 474 PPSPPPYG 481
              PPPY 
Sbjct: 100 QEPPPPYP 107

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 1/71 (1%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           Q SP PP    PP  +P    PP     PPP      S  P  + + +  P   P  P  
Sbjct: 528 QKSPPPPA-PTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTP 586

Query: 457 RLQPLPPPSPI 467
                  P  I
Sbjct: 587 SPTKDSSPEEI 597

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 18/65 (27%), Positives = 23/65 (35%)

Query: 433 HSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYP 492
            +  PPP     P P   PP P       PP  P P       S      +P+ ++ P P
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579

Query: 493 YPPPP 497
            P  P
Sbjct: 580 IPEEP 584

Length = 620

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 14/71 (19%)

Query: 414 PPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPIPCEKQP 473
           P PPPP PV         +  P P  +   +P    P P         P  SP P    P
Sbjct: 142 PQPPPPAPV-------VMMQPPPPHAMPPASPPAAQPAPSA-------PASSPPPTPASP 187

Query: 474 PPSPPPYGPLP 484
           PP+  P    P
Sbjct: 188 PPAKAPKSSHP 198

Length = 274

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 400 PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPP 454
              P Y       PPP  PP P    PP  Y      PPP       P  PPPP 
Sbjct: 57  EPLPAYGQYAA--PPPYGPPPPYYPAPPGVY---PTPPPPNSGYMADPQEPPPPY 106

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 80  ALQAWKKAIISDPWNLTSNW----VGCYVCNYTGVFC 112
           AL A+K ++  DP    S+W         C++TGV C
Sbjct: 7   ALLAFKSSLNGDPSGALSSWNPSSSDP--CSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	500
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.64
PLN03150	623	hypothetical protein; Provisional	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.34
PLN03150	623	hypothetical protein; Provisional	99.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.07
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.87
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.52
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.49
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.18
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.13
PRK15386	426	type III secretion protein GogB; Provisional	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.93
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	97.87
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.68
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.49
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.31
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.03
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	96.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.59
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.35
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.31
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	96.27
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.15
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.83
KOG4308	478	consensus LRR-containing protein [Function unknown	95.82
KOG4308	478	consensus LRR-containing protein [Function unknown	95.38
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.14
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.82
KOG4341	483	consensus F-box protein containing LRR [General fu	94.37
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.64
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.38
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.11
KOG1947	482	consensus Leucine rich repeat proteins, some prote	90.78
smart00370	26	LRR Leucine-rich repeats, outliers.	89.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.98
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.93
smart00370	26	LRR Leucine-rich repeats, outliers.	85.93
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	84.32
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	84.02
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	81.62
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.16

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.2e-36  Score=337.87  Aligned_cols=274  Identities=30%  Similarity=0.481  Sum_probs=172.6

Q ss_pred             CCCCCCCC-CCCCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCcccc-CCC
Q 041736           93 WNLTSNWV-GCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFN-KLK  170 (500)
Q Consensus        93 ~~~~~~w~-~~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~  170 (500)
                      .....+|. ..+||.|.||.|+..      .+|+.|||++|++.+.++..|..+++|++|+|++|.+++.+|..+. .+.
T Consensus        45 ~~~~~~w~~~~~~c~w~gv~c~~~------~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~  118 (968)
T PLN00113         45 LKYLSNWNSSADVCLWQGITCNNS------SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSS  118 (968)
T ss_pred             cccCCCCCCCCCCCcCcceecCCC------CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCC
Confidence            34456675 468999999999632      4677777777777777777777777777777777777766665543 566


Q ss_pred             CCCEEeCcCCcCCC----------------------cCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCC
Q 041736          171 LLFELDLSNNRFAG----------------------KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNN  227 (500)
Q Consensus       171 ~L~~L~Ls~n~l~~----------------------~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n  227 (500)
                      +|++|+|++|++++                      .+|..++++++|++|+|++|.+.+.+|..+.. .+|++|++++|
T Consensus       119 ~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n  198 (968)
T PLN00113        119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN  198 (968)
T ss_pred             CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence            66666666665554                      44444555555555555555555555544433 45555555555


Q ss_pred             CccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCCh
Q 041736          228 RFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP  306 (500)
Q Consensus       228 ~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  306 (500)
                      ++++.+|..++. .+|++|++++|.+.+.+|..++++.+ |++|++++|++.+.+|..++++++|++|+|++|++++.+|
T Consensus       199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC-CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence            555555554443 45666666666666666666666654 6666666666666666666666666666666666666666


Q ss_pred             hhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC----ccCCEEEcCCCCCCCCC
Q 041736          307 DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC----LDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       307 ~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~----~~L~~l~l~~N~l~~~~  373 (500)
                      ..+.++.+|++|+|++|.+.+.+|..+.++++|++|++++|.+++.++..    .+|+.|++++|.+.+..
T Consensus       278 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  348 (968)
T PLN00113        278 PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI  348 (968)
T ss_pred             hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence            66666666666666666666666666666666666666666666665542    35667777777766543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=2.5e-29  Score=285.08  Aligned_cols=251  Identities=26%  Similarity=0.434  Sum_probs=177.9

Q ss_pred             CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      .+.+|+.|+|++|.+.+.+|..++++.+|++|+|++|.+++.+|..++++++|++|+|++|++.+.+|..+.++++|++|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            35566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736          200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL  277 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l  277 (500)
                      +|++|++++.+|..+.. .+|++|++++|++++.+|..++. .+|++|++++|.+.+.+|..+.++.+ |++|++++|.+
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~l  296 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK-LISLDLSDNSL  296 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccC-cCEEECcCCee
Confidence            77777777777766655 67777777777777777766654 56777777777777777777777765 77777777777


Q ss_pred             CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC-
Q 041736          278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC-  356 (500)
Q Consensus       278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~-  356 (500)
                      .+.+|..+.++++|++|++++|.+++.+|..+..+++|+.|+|++|.+.+.+|..+..+.+|+.|++++|++++.+|.. 
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence            7777777777777777777777777777777777777777777777777777766767777777777777766655542 


Q ss_pred             ---ccCCEEEcCCCCCCC
Q 041736          357 ---LDLQGFDDKRNCLRD  371 (500)
Q Consensus       357 ---~~L~~l~l~~N~l~~  371 (500)
                         ..++.|++++|.+.+
T Consensus       377 ~~~~~L~~L~l~~n~l~~  394 (968)
T PLN00113        377 CSSGNLFKLILFSNSLEG  394 (968)
T ss_pred             hCcCCCCEEECcCCEecc
Confidence               134445555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=3.6e-25  Score=218.88  Aligned_cols=249  Identities=21%  Similarity=0.271  Sum_probs=185.5

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .++++|+|++|.|+..--..|..+.+|.+|.|+.|+++..-...|.+|.+|+.|+|..|+|.-.---.|.+|.+|+.|.|
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            35666777777776655566666667777777777776444455666777777777777766222345666777777777


Q ss_pred             cCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCc-cCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736          202 RYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDN-IGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH  278 (500)
Q Consensus       202 s~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~-~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~  278 (500)
                      ..|+++ .+.+..|-  .++++|+|+.|++...-..+ ++.++|+.|+|++|.|.....+.+....+ |++|+|++|+|+
T Consensus       253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk-L~~LdLs~N~i~  330 (873)
T KOG4194|consen  253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK-LKELDLSSNRIT  330 (873)
T ss_pred             hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc-ceeEeccccccc
Confidence            777776 44443333  78888999999887544444 34578999999999998888888888776 999999999999


Q ss_pred             CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCch---hhcCCCCCcEEEccCCcCccCCCC
Q 041736          279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPD---SVCSLPNLRNFSFDYNFFTGESPV  355 (500)
Q Consensus       279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~~p~  355 (500)
                      ...++.|..|..|++|+|++|.++..-...|..+.+|++|||++|.|+..|-+   .|..+++|+.|+|.+|++....-.
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR  410 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence            88888899999999999999998865556788889999999999998876643   577889999999999998754433


Q ss_pred             ----CccCCEEEcCCCCCCCC
Q 041736          356 ----CLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       356 ----~~~L~~l~l~~N~l~~~  372 (500)
                          ...|+.||+.+|.+...
T Consensus       411 Afsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  411 AFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             hhccCcccceecCCCCcceee
Confidence                33688999999988643

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=3.1e-24  Score=212.27  Aligned_cols=249  Identities=19%  Similarity=0.225  Sum_probs=187.0

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      ...+.||+++|.+..+-...|.++.+|+.++|..|.++ .||.......+|+.|+|.+|.|+..-...+..+..|+.|||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL  156 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL  156 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence            34678999999999998899999999999999999998 88876666777999999999999877888999999999999


Q ss_pred             cCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736          202 RYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH  278 (500)
Q Consensus       202 s~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~  278 (500)
                      |.|.|+ .++...+.  .++++|+|++|+|+..--..+.. .+|..|.|+.|+++..-...|.++.+ |+.|+|..|.|.
T Consensus       157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~-L~~LdLnrN~ir  234 (873)
T KOG4194|consen  157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK-LESLDLNRNRIR  234 (873)
T ss_pred             hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch-hhhhhcccccee
Confidence            999998 77766655  69999999999998543333332 57889999999999655567777887 999999888887


Q ss_pred             CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---
Q 041736          279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---  355 (500)
Q Consensus       279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---  355 (500)
                      -.--.+|.+|.+|+.|.|..|+|+..--..|..+.++++|+|..|+++..--.++.+++.|+.|+||+|.|...-..   
T Consensus       235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws  314 (873)
T KOG4194|consen  235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS  314 (873)
T ss_pred             eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence            54345666777777777777766644444555666666666666666644445566666666666666666544433   


Q ss_pred             -CccCCEEEcCCCCCCCCC
Q 041736          356 -CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       356 -~~~L~~l~l~~N~l~~~~  373 (500)
                       +..|++|++++|.++...
T Consensus       315 ftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             hcccceeEeccccccccCC
Confidence             334666666666665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=5.3e-24  Score=211.97  Aligned_cols=243  Identities=22%  Similarity=0.367  Sum_probs=134.2

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC-cCchhccCCCCCcEEe
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-KFPYVVLGLPKLKFLD  200 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~  200 (500)
                      .+++.|.|....+.. +|++++.+.+|++|.+++|++. .+-.+++.|+.|+.+++.+|++.. -+|..+..|..|..||
T Consensus        32 t~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD  109 (1255)
T KOG0444|consen   32 TQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD  109 (1255)
T ss_pred             hheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence            455555565555532 5666666666666666666665 344455566666666666666542 2555566666677777


Q ss_pred             ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCcc--CCCCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736          201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL  277 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~--~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l  277 (500)
                      ||+|+++ ..|..+-. +++-+|+|++|+|. .||..+  ....|-.|+|++|++. .+|..+..+.. |+.|+|++|-+
T Consensus       110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSM-LQTLKLSNNPL  185 (1255)
T ss_pred             cchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhh-hhhhhcCCChh
Confidence            7777666 55555443 56666777777665 344432  2255666677777666 56666666665 66666666654


Q ss_pred             CCCCccccccCCCccEEeccCcccC-CCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC---C
Q 041736          278 HSCLPEEIGLLKNVTVFDVSYNKLM-GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE---S  353 (500)
Q Consensus       278 ~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~---~  353 (500)
                      .-.--..+-.+++|++|.+++.+-+ ..+|.++..+.+|..+||+.|.+. .+|+.+.++.+|+.|+||+|+|+..   +
T Consensus       186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~  264 (1255)
T KOG0444|consen  186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTE  264 (1255)
T ss_pred             hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccH
Confidence            3221111222233333333333211 134555555566666666666665 5566666666666666666655422   1


Q ss_pred             CCCccCCEEEcCCCCCCC
Q 041736          354 PVCLDLQGFDDKRNCLRD  371 (500)
Q Consensus       354 p~~~~L~~l~l~~N~l~~  371 (500)
                      ..+.++++|++|.|.++.
T Consensus       265 ~~W~~lEtLNlSrNQLt~  282 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLTV  282 (1255)
T ss_pred             HHHhhhhhhccccchhcc
Confidence            223345555555555543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.84  E-value=2.6e-23  Score=207.05  Aligned_cols=264  Identities=30%  Similarity=0.400  Sum_probs=150.2

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCC-ccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFC-GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      .+|++|.+++|++.. +..+++.|+.|+.+++.+|++. .-||..+..|..|.+||||+|++. ..|..+..-+++-+|+
T Consensus        55 qkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN  132 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN  132 (1255)
T ss_pred             hhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence            445555555555533 2234445555555555555553 224444555555555555555555 4555555555555555


Q ss_pred             ccCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCCCCcceEEecccccc-------------------------
Q 041736          201 LRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFH-------------------------  253 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~-------------------------  253 (500)
                      ||+|+|. .||..++.  ..|-.|+|++|++...-|..-....|++|+|++|.+.                         
T Consensus       133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             cccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence            5555554 45544443  4455555555555422222112234444444444432                         


Q ss_pred             ccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhh
Q 041736          254 GCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV  333 (500)
Q Consensus       254 ~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l  333 (500)
                      ..+|.++..+.+ |..+|||.|++.. +|+.+.++.+|+.|+||+|+|+ .+-...+...+|++|+|++|+++ .+|..+
T Consensus       212 ~N~Ptsld~l~N-L~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av  287 (1255)
T KOG0444|consen  212 DNIPTSLDDLHN-LRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV  287 (1255)
T ss_pred             hcCCCchhhhhh-hhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence            235666666665 7777777777765 6677777777777777777776 44444455567777777777777 778888


Q ss_pred             cCCCCCcEEEccCCcCccC-CCC----CccCCEEEcCCCCCCCCCCCCChhhhhhhcccccccCcc
Q 041736          334 CSLPNLRNFSFDYNFFTGE-SPV----CLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTL  394 (500)
Q Consensus       334 ~~l~~L~~L~Ls~N~l~g~-~p~----~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~c~~~  394 (500)
                      +.++.|+.|.+.+|+++-+ +|.    ..+|+.+...+|.+.-.+.  ....|..+......|+-.
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE--glcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE--GLCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch--hhhhhHHHHHhcccccce
Confidence            8888888888888876522 232    3357777777887764432  223455555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.84  E-value=1.7e-22  Score=192.06  Aligned_cols=243  Identities=28%  Similarity=0.443  Sum_probs=130.5

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhcc-CCCCCcEE
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL-GLPKLKFL  199 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L  199 (500)
                      ++++++||...|.+ +.+|..++.+.+|+.|+|.+|+|. .+| +|.++..|++|+++.|++. .+|.... ++.+|.+|
T Consensus       182 m~~L~~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vL  257 (565)
T KOG0472|consen  182 MKRLKHLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVL  257 (565)
T ss_pred             HHHHHhcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceee
Confidence            34455555555544 335666666666666666666665 444 4555555555555555554 3333332 55566666


Q ss_pred             eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEecccccccc-----------------------
Q 041736          200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGC-----------------------  255 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~-----------------------  255 (500)
                      ||..|+++ .+|+.++. .+|++||+++|.++ .+|..+++..|+.|.+.||.+...                       
T Consensus       258 DLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~d  335 (565)
T KOG0472|consen  258 DLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDD  335 (565)
T ss_pred             eccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccceeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccC
Confidence            66666665 55555554 45666666666665 344445554555555555443100                       


Q ss_pred             -----------------------------------------Cchhhhcccc--cCcEEEeccCCC---------------
Q 041736          256 -----------------------------------------LPLSFGNMSR--TLNEVILTNNGL---------------  277 (500)
Q Consensus       256 -----------------------------------------~p~~l~~l~~--~L~~L~Ls~n~l---------------  277 (500)
                                                               +|.+.....+  -...++++.|++               
T Consensus       336 glS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT  415 (565)
T KOG0472|consen  336 GLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVT  415 (565)
T ss_pred             CCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHH
Confidence                                                     0100000000  011122222221               


Q ss_pred             --------CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCC-----------------------C
Q 041736          278 --------HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML-----------------------S  326 (500)
Q Consensus       278 --------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l-----------------------~  326 (500)
                              .+.++..++.+++|..|+|++|-+. .+|.+++.+..|+.|++++|+|                       .
T Consensus       416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~  494 (565)
T KOG0472|consen  416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG  494 (565)
T ss_pred             HHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc
Confidence                    1224444555556666666665555 5555555555566666665554                       3


Q ss_pred             CCCchhhcCCCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCC
Q 041736          327 GTVPDSVCSLPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLR  370 (500)
Q Consensus       327 g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~  370 (500)
                      ..-++.+.++.+|+.|||.+|.+....|.   +.++.+|++.+|.++
T Consensus       495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            22233477888888999999988776664   557888899888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=5.9e-23  Score=195.23  Aligned_cols=243  Identities=23%  Similarity=0.347  Sum_probs=197.7

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      ..++..++.|++.+|.+.. +|.+++.+..++.|+.++|+++ .+|.+++.+.+|+.|++++|++. .++..++.+..|+
T Consensus        64 l~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~  140 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE  140 (565)
T ss_pred             hhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence            4456678888888888765 6777888888888888888887 78888888888888888888888 7777788888888


Q ss_pred             EEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCC
Q 041736          198 FLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNG  276 (500)
Q Consensus       198 ~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~  276 (500)
                      .|+..+|+++ .+|..++. .+|..+++.+|++....+..+..+.|+.|+...|.+. .+|..++.+.+ |..|+|..|+
T Consensus       141 dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~-L~~LyL~~Nk  217 (565)
T KOG0472|consen  141 DLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLES-LELLYLRRNK  217 (565)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhh-hHHHHhhhcc
Confidence            8888888888 55555544 7788888888888866666666677888998888776 78999999987 9999999999


Q ss_pred             CCCCCccccccCCCccEEeccCcccCCCChhhhh-CCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736          277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIA-EMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV  355 (500)
Q Consensus       277 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~  355 (500)
                      +.. +| +|.++..|++|.++.|.|. .+|.+.. ++.+|.+|||++|++. +.|+.++-+.+|.+||+|+|.+++..+.
T Consensus       218 i~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  218 IRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             ccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcc
Confidence            886 55 7888999999999999998 7777765 8899999999999998 8889999999999999999999988776


Q ss_pred             Ccc--CCEEEcCCCCCC
Q 041736          356 CLD--LQGFDDKRNCLR  370 (500)
Q Consensus       356 ~~~--L~~l~l~~N~l~  370 (500)
                      ..+  |..|.+.+|.+.
T Consensus       294 LgnlhL~~L~leGNPlr  310 (565)
T KOG0472|consen  294 LGNLHLKFLALEGNPLR  310 (565)
T ss_pred             cccceeeehhhcCCchH
Confidence            544  455566666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.82  E-value=9.7e-20  Score=195.69  Aligned_cols=223  Identities=21%  Similarity=0.369  Sum_probs=114.7

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR  202 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  202 (500)
                      +.+.|++++++++. +|..+.  .+|+.|+|++|.|+ .+|..+.  .+|++|+|++|+|+ .+|..+.  .+|+.|+|+
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            34566666666554 343332  35666666666666 3444332  35666666666665 3444332  356666666


Q ss_pred             CCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736          203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP  282 (500)
Q Consensus       203 ~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p  282 (500)
                      +|++. .+|..+. .+|+.|++++|+++ .+|..+. .+|+.|++++|++++ +|..+.  . +|++|++++|.++. +|
T Consensus       250 ~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp--~-sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        250 INRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP--S-GITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch--h-hHHHHHhcCCcccc-CC
Confidence            66665 4554432 35666666666665 3444332 356666666666652 333332  1 25556666666554 33


Q ss_pred             cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc-cCCE
Q 041736          283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL-DLQG  361 (500)
Q Consensus       283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~-~L~~  361 (500)
                      ..+  .++|+.|++++|.++ .+|..+.  ++|+.|+|++|+|+ .+|..+.  ++|++|+|++|+|+...+... .|+.
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~~sL~~  392 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLPAALQI  392 (754)
T ss_pred             ccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHHHHHHH
Confidence            322  235555666666555 2444332  45566666666555 3444332  355556666665553322211 3555


Q ss_pred             EEcCCCCCCC
Q 041736          362 FDDKRNCLRD  371 (500)
Q Consensus       362 l~l~~N~l~~  371 (500)
                      |++++|.+..
T Consensus       393 LdLs~N~L~~  402 (754)
T PRK15370        393 MQASRNNLVR  402 (754)
T ss_pred             HhhccCCccc
Confidence            5555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.78  E-value=8e-21  Score=197.53  Aligned_cols=238  Identities=27%  Similarity=0.440  Sum_probs=150.0

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.+|+++|++++ +|+.++.+.+|+.|+..+|.|+ .+|..+..+++|++|++.+|.+. .+|..+.+++.|++|+|
T Consensus       241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            567788888888766 5577788888888888888885 67777777888888888888887 67777778888899999


Q ss_pred             cCCcCCCCCchhhcC---CCCCeEEccCCCccCCCCCccCC--CCcceEEeccccccccCchhhhcccccCcEEEeccCC
Q 041736          202 RYNEFEGKIPKALFD---KDLDAVFINNNRFSFELPDNIGN--SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNG  276 (500)
Q Consensus       202 s~N~l~g~~p~~~~~---~~L~~L~l~~n~l~~~~p~~~~~--~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~  276 (500)
                      ..|++. .+|+.++.   ..|+.|+.+.|.+. ..|..-+.  ..|+.|++.+|.+++..-..+-++.. |+.|+|++|.
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h-LKVLhLsyNr  394 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH-LKVLHLSYNR  394 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccc-eeeeeecccc
Confidence            888887 67765544   23444444444443 12211111  33566666666666655555555554 6666666666


Q ss_pred             CCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC-CC
Q 041736          277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES-PV  355 (500)
Q Consensus       277 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~-p~  355 (500)
                      +.......+.++..|++|+||+|+++ .+|..+.++..|++|...+|++. .+| .+..++.|+.+|++.|+++... +.
T Consensus       395 L~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~  471 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE  471 (1081)
T ss_pred             cccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence            65544445566666666666666666 55566666666666666666555 444 4555566666666666554321 11


Q ss_pred             ---CccCCEEEcCCCC
Q 041736          356 ---CLDLQGFDDKRNC  368 (500)
Q Consensus       356 ---~~~L~~l~l~~N~  368 (500)
                         ..+|+.||+++|.
T Consensus       472 ~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  472 ALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hCCCcccceeeccCCc
Confidence               1345555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.4e-18  Score=186.68  Aligned_cols=224  Identities=25%  Similarity=0.403  Sum_probs=179.1

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.|+|++|+|+. +|..+.  .+|++|+|++|.|+ .+|..+.  .+|+.|+|++|++. .+|..+.  .+|+.|+|
T Consensus       199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            468999999999985 565543  58999999999998 5676554  47999999999998 7777664  58999999


Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL  281 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~  281 (500)
                      ++|+++ .+|..+. .+|+.|++++|+++. +|..+. ..|+.|++++|.++. +|..+.  . +|++|++++|.+++ +
T Consensus       270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~--~-sL~~L~Ls~N~Lt~-L  340 (754)
T PRK15370        270 FHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP--P-GLKTLEAGENALTS-L  340 (754)
T ss_pred             cCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc--c-cceeccccCCcccc-C
Confidence            999998 6777654 589999999999984 555443 478999999999984 565443  3 49999999999987 6


Q ss_pred             ccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC---CCC--
Q 041736          282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES---PVC--  356 (500)
Q Consensus       282 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~---p~~--  356 (500)
                      |..+.  ++|+.|+|++|+|+ .+|..+.  .+|++|+|++|.|+ .+|..+.  .+|+.|++++|+|++..   +.+  
T Consensus       341 P~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~  412 (754)
T PRK15370        341 PASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRG  412 (754)
T ss_pred             Chhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhh
Confidence            66553  69999999999998 6777663  68999999999999 6776664  37999999999998532   122  


Q ss_pred             --ccCCEEEcCCCCCCC
Q 041736          357 --LDLQGFDDKRNCLRD  371 (500)
Q Consensus       357 --~~L~~l~l~~N~l~~  371 (500)
                        ..+..+++.+|.+..
T Consensus       413 ~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        413 EGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             cCCCccEEEeeCCCccH
Confidence              346789999998874

>PLN03210 Resistant to P

Probab=99.75  E-value=3.5e-17  Score=187.10  Aligned_cols=221  Identities=18%  Similarity=0.214  Sum_probs=126.0

Q ss_pred             CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      ...+|+.|+|.+|.+.. ++..+..+.+|++|+|+++...+.+|. +..+++|++|+|++|.....+|..+.++.+|+.|
T Consensus       609 ~~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             CccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            34567777777777653 455566777777777777654445653 6677777777777776555777777777777777


Q ss_pred             eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccc--------------
Q 041736          200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSR--------------  265 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~--------------  265 (500)
                      ++++|...+.+|..+...+|++|++++|.....+|...  .+|++|++++|.+. .+|..+ .+.+              
T Consensus       687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL  762 (1153)
T ss_pred             eCCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence            77776544466665555677777777776555554332  35667777777654 344322 1221              


Q ss_pred             ----------------cCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736          266 ----------------TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV  329 (500)
Q Consensus       266 ----------------~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i  329 (500)
                                      +|++|+|++|...+.+|.+++++++|+.|+|++|..-+.+|..+ .+++|+.|+|++|.....+
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~  841 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF  841 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence                            24444444444444445455555555555555443322444333 3445555555544333333


Q ss_pred             chhhcCCCCCcEEEccCCcCc
Q 041736          330 PDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       330 p~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      |..   ..+|++|+|++|.++
T Consensus       842 p~~---~~nL~~L~Ls~n~i~  859 (1153)
T PLN03210        842 PDI---STNISDLNLSRTGIE  859 (1153)
T ss_pred             ccc---ccccCEeECCCCCCc
Confidence            321   234555555555554

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=1.9e-17  Score=177.18  Aligned_cols=216  Identities=25%  Similarity=0.323  Sum_probs=107.3

Q ss_pred             EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736          125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN  204 (500)
Q Consensus       125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  204 (500)
                      ..|||++++++ .+|..+.  .+|+.|++.+|+|+ .+|.   .+++|++|+|++|+|+ .+|..   ..+|+.|+|++|
T Consensus       204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCC
Confidence            34566666665 3454443  25666666666665 3443   2345666666666665 33322   234455555555


Q ss_pred             cCCCCCchhh------------------cCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhccccc
Q 041736          205 EFEGKIPKAL------------------FDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRT  266 (500)
Q Consensus       205 ~l~g~~p~~~------------------~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~  266 (500)
                      .++ .++...                  ...+|++|++++|++++ +|...  ..|+.|++++|.+++ +|.    +..+
T Consensus       273 ~L~-~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~-Lp~lp--~~L~~L~Ls~N~L~~-LP~----lp~~  343 (788)
T PRK15387        273 PLT-HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPALP--SELCKLWAYNNQLTS-LPT----LPSG  343 (788)
T ss_pred             chh-hhhhchhhcCEEECcCCccccccccccccceeECCCCcccc-CCCCc--ccccccccccCcccc-ccc----cccc
Confidence            444 233211                  11345555555555543 22211  234455555555542 332    1113


Q ss_pred             CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccC
Q 041736          267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY  346 (500)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~  346 (500)
                      |++|+|++|+|++ +|..   ..+|+.|++++|+|+ .+|..   ..+|+.|+|++|.|+ .+|..   ..+|+.|++++
T Consensus       344 Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~  411 (788)
T PRK15387        344 LQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSG  411 (788)
T ss_pred             cceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccC
Confidence            6666666666654 3322   234555666666665 34432   235666666666666 34432   24566667777


Q ss_pred             CcCccCCCCCccCCEEEcCCCCCCCC
Q 041736          347 NFFTGESPVCLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       347 N~l~g~~p~~~~L~~l~l~~N~l~~~  372 (500)
                      |.|++.......|+.|++++|.++..
T Consensus       412 N~LssIP~l~~~L~~L~Ls~NqLt~L  437 (788)
T PRK15387        412 NRLTSLPMLPSGLLSLSVYRNQLTRL  437 (788)
T ss_pred             CcCCCCCcchhhhhhhhhccCccccc
Confidence            76665322223466666677766643

>PLN03210 Resistant to P

Probab=99.74  E-value=5.3e-17  Score=185.68  Aligned_cols=239  Identities=21%  Similarity=0.258  Sum_probs=185.8

Q ss_pred             CCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736          119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF  198 (500)
Q Consensus       119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  198 (500)
                      ..+.+|+.|+|+++...+.+|. ++.+++|++|+|++|.....+|..+.++.+|++|+|++|.....+|..+ ++++|++
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~  708 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR  708 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence            3467899999998876666764 8889999999999987767899999999999999999976555777655 7889999


Q ss_pred             EeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-------------------------------CCCcceEEe
Q 041736          199 LDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-------------------------------NSPVSVLVL  247 (500)
Q Consensus       199 L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-------------------------------~~~L~~L~l  247 (500)
                      |+|++|...+.+|..  ..+|++|++++|.+. .+|..+.                               ..+|+.|++
T Consensus       709 L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L  785 (1153)
T PLN03210        709 LNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL  785 (1153)
T ss_pred             EeCCCCCCccccccc--cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence            999988765566542  357888888888765 3443221                               136788899


Q ss_pred             ccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736          248 ANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG  327 (500)
Q Consensus       248 ~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g  327 (500)
                      ++|...+.+|..++++.+ |++|++++|...+.+|..+ ++++|+.|+|++|.....+|..   ..+|+.|+|++|.++ 
T Consensus       786 s~n~~l~~lP~si~~L~~-L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-  859 (1153)
T PLN03210        786 SDIPSLVELPSSIQNLHK-LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-  859 (1153)
T ss_pred             CCCCCccccChhhhCCCC-CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-
Confidence            999888889999999997 9999999987666677766 7899999999998665555543   368999999999998 


Q ss_pred             CCchhhcCCCCCcEEEccC-CcCccCCC---CCccCCEEEcCCCC
Q 041736          328 TVPDSVCSLPNLRNFSFDY-NFFTGESP---VCLDLQGFDDKRNC  368 (500)
Q Consensus       328 ~ip~~l~~l~~L~~L~Ls~-N~l~g~~p---~~~~L~~l~l~~N~  368 (500)
                      .+|.++..+++|+.|++++ |++.+...   ....|+.++++++.
T Consensus       860 ~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        860 EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            7899999999999999998 45554322   23356677776553

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.73  E-value=2.8e-17  Score=175.82  Aligned_cols=221  Identities=24%  Similarity=0.298  Sum_probs=161.0

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccC-----------------CCCCCEEeCcCCcCCC
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNK-----------------LKLLFELDLSNNRFAG  184 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-----------------l~~L~~L~Ls~n~l~~  184 (500)
                      .+++.|++.+|+++. +|.   .+++|++|+|++|+|+ .+|..+.+                 ..+|+.|+|++|+++ 
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-  295 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-  295 (788)
T ss_pred             cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-
Confidence            357888888888875 443   2467888888888887 34432211                 123455566666655 


Q ss_pred             cCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhccc
Q 041736          185 KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMS  264 (500)
Q Consensus       185 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  264 (500)
                      .+|.   .+++|++|+|++|++++ +|..  ..+|+.|++++|++++ +|...  .+|++|+|++|++++ +|...    
T Consensus       296 ~LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~lp--~~Lq~LdLS~N~Ls~-LP~lp----  361 (788)
T PRK15387        296 SLPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTLP--SGLQELSVSDNQLAS-LPTLP----  361 (788)
T ss_pred             cccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-ccccc--cccceEecCCCccCC-CCCCC----
Confidence            3343   23689999999999984 5542  2578999999999984 56432  479999999999994 55432    


Q ss_pred             ccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEc
Q 041736          265 RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF  344 (500)
Q Consensus       265 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~L  344 (500)
                      .+|+.|++++|.|++ +|..   ..+|+.|+|++|+|+ .+|..   ..+|+.|++++|.|+ .+|...   .+|+.|++
T Consensus       362 ~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~L  429 (788)
T PRK15387        362 SELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSV  429 (788)
T ss_pred             cccceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhh
Confidence            248899999999997 6653   357999999999999 46653   368999999999998 477543   46889999


Q ss_pred             cCCcCccCCCC----CccCCEEEcCCCCCCCCCCC
Q 041736          345 DYNFFTGESPV----CLDLQGFDDKRNCLRDKPRQ  375 (500)
Q Consensus       345 s~N~l~g~~p~----~~~L~~l~l~~N~l~~~~~~  375 (500)
                      ++|+|+ .+|.    +..+..|++++|.+++...+
T Consensus       430 s~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        430 YRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             ccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            999998 4554    34689999999999986543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.5e-18  Score=171.90  Aligned_cols=229  Identities=22%  Similarity=0.227  Sum_probs=118.5

Q ss_pred             CcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCCCCc------cCCccccCCCCCCEEeCcCCcCCCcCchhcc
Q 041736          122 RTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNRFCG------TLPRSFNKLKLLFELDLSNNRFAGKFPYVVL  191 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~  191 (500)
                      .+++.|+++++.++..    +...+...++|++|+++++.+.+      .++..+..+.+|++|+|++|.+.+..+..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            4466777777766332    34445556667777777766652      2234455566777777777776654444444


Q ss_pred             CCCC---CcEEeccCCcCCCCCchh----hc-C-CCCCeEEccCCCccCCCCC----cc-CCCCcceEEecccccccc--
Q 041736          192 GLPK---LKFLDLRYNEFEGKIPKA----LF-D-KDLDAVFINNNRFSFELPD----NI-GNSPVSVLVLANNKFHGC--  255 (500)
Q Consensus       192 ~l~~---L~~L~Ls~N~l~g~~p~~----~~-~-~~L~~L~l~~n~l~~~~p~----~~-~~~~L~~L~l~~n~l~~~--  255 (500)
                      .+.+   |++|++++|++++.....    +. . .+|++|++++|.+++....    .+ ...+|++|++++|.+++.  
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  182 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI  182 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence            4443   777777777665311111    11 1 4566666666666532111    11 113466666666665532  


Q ss_pred             --CchhhhcccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCCChhhhhC-----CCCCcEEEcccCC
Q 041736          256 --LPLSFGNMSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGELPDTIAE-----MTSLQQLNVAHNM  324 (500)
Q Consensus       256 --~p~~l~~l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~N~  324 (500)
                        +...+..+.. |++|++++|.+++.    +...+..+++|++|++++|.+++.....+..     ...|++|++++|.
T Consensus       183 ~~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         183 RALAEGLKANCN-LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHhCCC-CCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence              1222333333 66666666665532    2233445555666666666655422222211     2456666666666


Q ss_pred             CCC----CCchhhcCCCCCcEEEccCCcCcc
Q 041736          325 LSG----TVPDSVCSLPNLRNFSFDYNFFTG  351 (500)
Q Consensus       325 l~g----~ip~~l~~l~~L~~L~Ls~N~l~g  351 (500)
                      +++    .+...+..+++|+++++++|.++.
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            541    222334444556666666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=1.5e-18  Score=171.97  Aligned_cols=246  Identities=24%  Similarity=0.225  Sum_probs=161.4

Q ss_pred             EEECCCCCCc-ccCchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCC------cCchhccCCC
Q 041736          126 GIDLNHGDIA-SYLPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAG------KFPYVVLGLP  194 (500)
Q Consensus       126 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~------~~p~~l~~l~  194 (500)
                      .|+|+++++. ......+..+.+|++|+++++.++..    ++..+...++|++|+++++.+.+      .++..+..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~   81 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC   81 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence            4677777776 33445566777788888888887532    44556667778888888887762      2344566778


Q ss_pred             CCcEEeccCCcCCCCCchhhcC-C---CCCeEEccCCCccCCC----CCccC-C-CCcceEEecccccccc----Cchhh
Q 041736          195 KLKFLDLRYNEFEGKIPKALFD-K---DLDAVFINNNRFSFEL----PDNIG-N-SPVSVLVLANNKFHGC----LPLSF  260 (500)
Q Consensus       195 ~L~~L~Ls~N~l~g~~p~~~~~-~---~L~~L~l~~n~l~~~~----p~~~~-~-~~L~~L~l~~n~l~~~----~p~~l  260 (500)
                      +|++|++++|.+.+..+..+.. .   +|++|++++|++++..    ...+. . .+|+.|++++|.+++.    +...+
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  161 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL  161 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence            8888888888887544444332 2   3888888888876321    11121 2 4678888888888743    23344


Q ss_pred             hcccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCCCchh
Q 041736          261 GNMSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGTVPDS  332 (500)
Q Consensus       261 ~~l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~  332 (500)
                      ..+.+ |++|++++|.+++.    +...+..+++|++|+|++|.+++.    +...+..+++|++|++++|.+++.....
T Consensus       162 ~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~  240 (319)
T cd00116         162 RANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA  240 (319)
T ss_pred             HhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence            45554 88888888888742    233445566888888888887643    2334556778888888888887522222


Q ss_pred             hc-----CCCCCcEEEccCCcCcc--------CCCCCccCCEEEcCCCCCCCC
Q 041736          333 VC-----SLPNLRNFSFDYNFFTG--------ESPVCLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       333 l~-----~l~~L~~L~Ls~N~l~g--------~~p~~~~L~~l~l~~N~l~~~  372 (500)
                      +.     ....|++|++++|.++.        .++....|+.+++++|.+...
T Consensus       241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            21     23678888888888862        233345688888888888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=4.4e-19  Score=150.65  Aligned_cols=164  Identities=27%  Similarity=0.529  Sum_probs=117.4

Q ss_pred             CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      .+.++++|.|++|.++. +|..++.+.+|+.|++.+|++. .+|.+++.+++|+.|+++.|++. .+|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            34677888888888765 5666788888888888888887 77778888888888888888887 778888888888888


Q ss_pred             eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      ||.+|++...                                             .+|..|..++. |+.|+|++|.+.-
T Consensus       108 dltynnl~e~---------------------------------------------~lpgnff~m~t-lralyl~dndfe~  141 (264)
T KOG0617|consen  108 DLTYNNLNEN---------------------------------------------SLPGNFFYMTT-LRALYLGDNDFEI  141 (264)
T ss_pred             hccccccccc---------------------------------------------cCCcchhHHHH-HHHHHhcCCCccc
Confidence            8888876521                                             23334444554 6666666666654


Q ss_pred             CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736          280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS  335 (500)
Q Consensus       280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~  335 (500)
                       +|..++++++|+.|.+..|.+- .+|.+++.+..|++|++++|+++ .+|..+++
T Consensus       142 -lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  142 -LPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             -CChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhh
Confidence             5666677777777777777666 66777777777777777777776 55555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.68  E-value=7.6e-19  Score=167.20  Aligned_cols=249  Identities=21%  Similarity=0.221  Sum_probs=180.6

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcC-CcCCCcCchhccCCCCCcEEe
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN-NRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      ...+.|+|..|+|+.+-+..|+.+.+|+.|||++|.|+.+-|++|.++.+|..|-+.+ |+|+..--..|.+|.+|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            3568999999999998888999999999999999999999999999999987776666 999966667889999999999


Q ss_pred             ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccC-CCCcceEEecccccc------------ccCchhhhcccc-
Q 041736          201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNKFH------------GCLPLSFGNMSR-  265 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~l~------------~~~p~~l~~l~~-  265 (500)
                      +.-|++.-.....+.. .+|..|.+.+|.+...--..+. ...++.+.+..|.+.            ...+.+++.... 
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            9999888333333333 6788888888877632221222 244555555555411            011111111110 


Q ss_pred             --------------------cCcEE---EeccCCCCCCCc-cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736          266 --------------------TLNEV---ILTNNGLHSCLP-EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA  321 (500)
Q Consensus       266 --------------------~L~~L---~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  321 (500)
                                          +++.+   -.+.+...+.-| ..|+.|++|+.|+|++|+|++.-..+|.++.++++|.|.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~  306 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT  306 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence                                11111   123333444333 357889999999999999998888999999999999999


Q ss_pred             cCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc----cCCEEEcCCCCCC
Q 041736          322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL----DLQGFDDKRNCLR  370 (500)
Q Consensus       322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~----~L~~l~l~~N~l~  370 (500)
                      .|+|...--..|.++..|+.|+|.+|+|+...|..+    .|.+|++-.|.+.
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            999985555678899999999999999987766544    5778887777443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7.8e-19  Score=149.18  Aligned_cols=162  Identities=28%  Similarity=0.441  Sum_probs=135.5

Q ss_pred             cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeE
Q 041736          143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV  222 (500)
Q Consensus       143 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L  222 (500)
                      -++++++.|.|++|+++ .+|..++.+.+|+.|++++|++. .+|..+..+++|+.|+++-|++.               
T Consensus        30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~---------------   92 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN---------------   92 (264)
T ss_pred             cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------------
Confidence            35566777777777777 56666777777777777777777 66777777777777777666654               


Q ss_pred             EccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC-CCccccccCCCccEEeccCccc
Q 041736          223 FINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS-CLPEEIGLLKNVTVFDVSYNKL  301 (500)
Q Consensus       223 ~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l  301 (500)
                                                      .+|..|+.+.. |+.|||..|++.. .+|..|..++.|+.|.|++|.+
T Consensus        93 --------------------------------~lprgfgs~p~-levldltynnl~e~~lpgnff~m~tlralyl~dndf  139 (264)
T KOG0617|consen   93 --------------------------------ILPRGFGSFPA-LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF  139 (264)
T ss_pred             --------------------------------cCccccCCCch-hhhhhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence                                            56778888887 9999999999975 5788899999999999999999


Q ss_pred             CCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC
Q 041736          302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC  356 (500)
Q Consensus       302 ~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~  356 (500)
                      . .+|..++++++|+.|.+++|.+. .+|..++.++.|++|.+.+|+++-..|..
T Consensus       140 e-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  140 E-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             c-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhh
Confidence            9 89999999999999999999998 88999999999999999999999877763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.64  E-value=9.8e-18  Score=174.82  Aligned_cols=220  Identities=21%  Similarity=0.341  Sum_probs=175.7

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhc-cCCC-CCcE
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVV-LGLP-KLKF  198 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~-~L~~  198 (500)
                      +.+|+.|+..+|.+ ..++..+....+|+.|.+..|.+. .+|..+.+++.|++|||..|+|. .+|..+ ..+. +|..
T Consensus       263 ~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~  339 (1081)
T KOG0618|consen  263 CANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNT  339 (1081)
T ss_pred             cccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHH
Confidence            46899999999999 458888999999999999999998 78888888999999999999998 555533 3332 3777


Q ss_pred             EeccCCcCCCCCchhhc--CCCCCeEEccCCCccCCCCCcc-CCCCcceEEeccccccccCchhhhcccccCcEEEeccC
Q 041736          199 LDLRYNEFEGKIPKALF--DKDLDAVFINNNRFSFELPDNI-GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN  275 (500)
Q Consensus       199 L~Ls~N~l~g~~p~~~~--~~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n  275 (500)
                      |+.+.|++. ..|..-.  ...|+.|++.+|.++......+ +..+|++|+|++|++...-...+.++.. |++|+||+|
T Consensus       340 ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~-LeeL~LSGN  417 (1081)
T KOG0618|consen  340 LNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE-LEELNLSGN  417 (1081)
T ss_pred             Hhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH-hHHHhcccc
Confidence            888888876 4552211  1678899999999987654444 4488999999999998555567788886 999999999


Q ss_pred             CCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc
Q 041736          276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF  348 (500)
Q Consensus       276 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~  348 (500)
                      +++. +|.++.++..|++|...+|++. ..| .+..++.|+.+|++.|+|+...-..-...++|++|||++|.
T Consensus       418 kL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  418 KLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            9987 7888999999999999999998 777 78889999999999999875332222233789999999986

>PLN03150 hypothetical protein; Provisional

Probab=99.62  E-value=4.7e-15  Score=158.76  Aligned_cols=154  Identities=23%  Similarity=0.377  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHhccCCCCCCCCCCCCCCCC----CcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCC
Q 041736           73 RIRSAYIALQAWKKAIISDPWNLTSNWVGCYVC----NYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADI  148 (500)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~c----~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L  148 (500)
                      +...+..||..+|..+. ++.  ..+|.+..||    .|.||.|..... .....++.|+|++|.+.|.+|..++.+.+|
T Consensus       369 t~~~~~~aL~~~k~~~~-~~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~-~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L  444 (623)
T PLN03150        369 TLLEEVSALQTLKSSLG-LPL--RFGWNGDPCVPQQHPWSGADCQFDST-KGKWFIDGLGLDNQGLRGFIPNDISKLRHL  444 (623)
T ss_pred             cCchHHHHHHHHHHhcC-Ccc--cCCCCCCCCCCcccccccceeeccCC-CCceEEEEEECCCCCccccCCHHHhCCCCC
Confidence            45567889999998763 222  2378765442    799999963211 112369999999999999999999999999


Q ss_pred             CEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--CCCCeEEccC
Q 041736          149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINN  226 (500)
Q Consensus       149 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~  226 (500)
                      +.|+|++|.|+|.+|..++.+++|++|+|++|+++|.+|..+.++++|++|+|++|+++|.+|..+..  .++..+++.+
T Consensus       445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~  524 (623)
T PLN03150        445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD  524 (623)
T ss_pred             CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence            99999999999999999999999999999999999999999999999999999999999999987654  3445566666


Q ss_pred             CCcc
Q 041736          227 NRFS  230 (500)
Q Consensus       227 n~l~  230 (500)
                      |...
T Consensus       525 N~~l  528 (623)
T PLN03150        525 NAGL  528 (623)
T ss_pred             Cccc
Confidence            5443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.62  E-value=2.5e-17  Score=156.98  Aligned_cols=244  Identities=20%  Similarity=0.248  Sum_probs=178.5

Q ss_pred             CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC-CcCCCCCchhhcC--CCCCeEE
Q 041736          147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY-NEFEGKIPKALFD--KDLDAVF  223 (500)
Q Consensus       147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~--~~L~~L~  223 (500)
                      .-..|+|..|.|+..-+.+|..+.+|+.|||++|+|+.+-|+.|.++.+|..|-+.+ |+|+ .++...|.  ..|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            567899999999977778999999999999999999988999999999998887776 9998 88888776  7888899


Q ss_pred             ccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC------------CCccccccCCC
Q 041736          224 INNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS------------CLPEEIGLLKN  290 (500)
Q Consensus       224 l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~------------~~p~~~~~l~~  290 (500)
                      +.-|++.-...+.+.. .++..|.+..|.+...--..|..+.. ++.+.+..|.+-.            ..+.+++....
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~-i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc  225 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA-IKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC  225 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhc-cchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence            9888887555544433 56788888999887433347778876 8999888877321            11222232222


Q ss_pred             ccEEec-------------------------cCcccCCCCh-hhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEc
Q 041736          291 VTVFDV-------------------------SYNKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF  344 (500)
Q Consensus       291 L~~L~L-------------------------s~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~L  344 (500)
                      ..-..+                         +.+...+.-| ..|.++++|++|+|++|+|++.-..+|.....+++|.|
T Consensus       226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L  305 (498)
T KOG4237|consen  226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL  305 (498)
T ss_pred             cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence            111111                         1122222333 34788999999999999999888889999999999999


Q ss_pred             cCCcCccC----CCCCccCCEEEcCCCCCCCCCCC-C---ChhhhhhhcccccccC
Q 041736          345 DYNFFTGE----SPVCLDLQGFDDKRNCLRDKPRQ-R---STLQCRMFLSRLVYCN  392 (500)
Q Consensus       345 s~N~l~g~----~p~~~~L~~l~l~~N~l~~~~~~-~---~~~~~~~~~~~~~~c~  392 (500)
                      ..|+|...    +-....|+.|++++|+|+...+- +   .......+.+|++.|+
T Consensus       306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            99998633    33344799999999999765331 1   1112345567777775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=7e-15  Score=146.36  Aligned_cols=194  Identities=29%  Similarity=0.483  Sum_probs=146.2

Q ss_pred             CCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEc
Q 041736          145 LADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI  224 (500)
Q Consensus       145 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l  224 (500)
                      +..-...||+.|++. ++|..+..+..|+.|.|++|.+. .+|..+.++..|++|||+.|+++ .+|..++.--|+.|-+
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~  150 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIV  150 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEE
Confidence            444556778888887 77777777778888888888887 77888888888888888888887 7777777777888888


Q ss_pred             cCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC
Q 041736          225 NNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG  303 (500)
Q Consensus       225 ~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  303 (500)
                      ++|+++ .+|..++. ..|..|+.+.|.+. .+|..++.+.+ |+.|.+..|++.. +|+.+..| .|..||+++|+++ 
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s-lr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis-  224 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS-LRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKIS-  224 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH-HHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCcee-
Confidence            888777 56666664 56778888888887 67888888886 8888888888877 56666644 6788888888888 


Q ss_pred             CChhhhhCCCCCcEEEcccCCCCCCCchhhcC---CCCCcEEEccCCc
Q 041736          304 ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS---LPNLRNFSFDYNF  348 (500)
Q Consensus       304 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~---l~~L~~L~Ls~N~  348 (500)
                      .||..|.+|..|++|-|.+|.+. .-|..++.   ..-.++|+..-.+
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            78888888888888888888887 44444432   2233556655553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=3.7e-14  Score=141.29  Aligned_cols=192  Identities=21%  Similarity=0.268  Sum_probs=160.8

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .-.+..||+.|.+.. +|..+..+..|+.+.|+.|.|. .||..+.++..|.+|||+.|+++ .+|..+..| -|+.|-+
T Consensus        75 tdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~  150 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIV  150 (722)
T ss_pred             cchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEE
Confidence            345678999999865 7888889999999999999998 89999999999999999999999 788888776 4999999


Q ss_pred             cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      ++|+++ .+|..+.. ..|..|+.+.|++....+...+..+|+.|.+..|++. .+|.++..+.  |..||+++|++.. 
T Consensus       151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp--Li~lDfScNkis~-  225 (722)
T KOG0532|consen  151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP--LIRLDFSCNKISY-  225 (722)
T ss_pred             ecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--eeeeecccCceee-
Confidence            999998 78877765 7889999999999844444444578999999999998 6888888775  9999999999987 


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCC---CcEEEcccC
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTS---LQQLNVAHN  323 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~L~~N  323 (500)
                      +|-.|.+|++|++|-|.+|.+. .-|..++..-+   .++|+.+-+
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            8999999999999999999998 66666654333   356666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.34  E-value=1.7e-12  Score=132.66  Aligned_cols=195  Identities=34%  Similarity=0.534  Sum_probs=120.9

Q ss_pred             EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCC-CCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736          126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLK-LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN  204 (500)
Q Consensus       126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  204 (500)
                      .+++..+.+...+ ..+..++.++.|++.+|.++ .++.....+. +|++|++++|++. .++..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            4677777664433 23455678888888888887 5666666664 8888888888887 56566778888888888888


Q ss_pred             cCCCCCchhh-cCCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736          205 EFEGKIPKAL-FDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP  282 (500)
Q Consensus       205 ~l~g~~p~~~-~~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p  282 (500)
                      +++ .++... ...+|+.|++++|++. .++..++. ..|++|.+++|.+. .++..+.++.. +..|.+.+|++.. ++
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~-l~~l~l~~n~~~~-~~  248 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN-LSGLELSNNKLED-LP  248 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc-ccccccCCceeee-cc
Confidence            887 666555 4467777777777776 44444322 33566666666432 23344555554 5555555555544 23


Q ss_pred             cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCc
Q 041736          283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVP  330 (500)
Q Consensus       283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip  330 (500)
                      ..++.+.+|++|++++|.++ .++. ++.+.+|+.|++++|.+...++
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence            44555555666666666655 3322 5555556666666655554433

>PLN03150 hypothetical protein; Provisional

Probab=99.25  E-value=1.4e-11  Score=132.13  Aligned_cols=89  Identities=28%  Similarity=0.584  Sum_probs=51.6

Q ss_pred             CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccC
Q 041736          267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY  346 (500)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~  346 (500)
                      ++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|+.+.++++|++|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            45555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcCccCCCC
Q 041736          347 NFFTGESPV  355 (500)
Q Consensus       347 N~l~g~~p~  355 (500)
                      |+|+|.+|.
T Consensus       500 N~l~g~iP~  508 (623)
T PLN03150        500 NSLSGRVPA  508 (623)
T ss_pred             CcccccCCh
Confidence            555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1.3e-11  Score=126.03  Aligned_cols=182  Identities=30%  Similarity=0.442  Sum_probs=148.4

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCC-CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLA-DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      +..++.|++.+|.++. ++.....+. +|+.|++++|.+. .++..+..+++|+.|++++|+++ .++.....+.+|+.|
T Consensus       115 ~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L  191 (394)
T COG4886         115 LTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL  191 (394)
T ss_pred             ccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence            4579999999999976 555667774 9999999999998 66677899999999999999999 677666688999999


Q ss_pred             eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736          200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH  278 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~  278 (500)
                      ++++|+++ .++..... ..|++|.+++|.+...+...-....+..+.+.+|.+.. ++..++.+.. +++|++++|.++
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~-l~~L~~s~n~i~  268 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSN-LETLDLSNNQIS  268 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhccccc-cceecccccccc
Confidence            99999999 88877644 56999999999644233323333667888888888873 4677888886 999999999999


Q ss_pred             CCCccccccCCCccEEeccCcccCCCChhhhh
Q 041736          279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIA  310 (500)
Q Consensus       279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~  310 (500)
                      ....  ++.+.+|+.||+++|.++...+....
T Consensus       269 ~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         269 SISS--LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             cccc--ccccCccCEEeccCccccccchhhhc
Confidence            8533  89999999999999999976665443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.17  E-value=5.6e-12  Score=119.22  Aligned_cols=87  Identities=17%  Similarity=0.197  Sum_probs=63.5

Q ss_pred             cCcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCC---CCccCCcc-------ccCCCCCCEEeCcCCcCCCcC
Q 041736          121 IRTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNR---FCGTLPRS-------FNKLKLLFELDLSNNRFAGKF  186 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~---l~~~~p~~-------l~~l~~L~~L~Ls~n~l~~~~  186 (500)
                      +..++.|+|++|.|...    +...+.+.++|+..++++-.   +...+|..       +....+|++||||+|.|.-..
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            45789999999998443    45567788899999988642   22234433       345668999999999987443


Q ss_pred             c----hhccCCCCCcEEeccCCcCC
Q 041736          187 P----YVVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       187 p----~~l~~l~~L~~L~Ls~N~l~  207 (500)
                      .    ..+..+..|++|.|.+|.+.
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCC
Confidence            3    34566889999999999875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4.6e-12  Score=122.95  Aligned_cols=207  Identities=21%  Similarity=0.234  Sum_probs=115.1

Q ss_pred             CCCCCCEEEcCCCCCCccCC--ccccCCCCCCEEeCcCCcCCCc--CchhccCCCCCcEEeccCCcCCCCCchhhc--CC
Q 041736          144 LLADIALFHVNTNRFCGTLP--RSFNKLKLLFELDLSNNRFAGK--FPYVVLGLPKLKFLDLRYNEFEGKIPKALF--DK  217 (500)
Q Consensus       144 ~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~--~~  217 (500)
                      ++.+|+.+.|.+..+. ...  .....|++++.|||++|-|...  +.....+|++|+.|+|+.|++.--+....-  ..
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4555666666665553 111  2344566666666666655531  223444566666666666665422221111  15


Q ss_pred             CCCeEEccCCCccCCCCCc--cCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC-ccccccCCCccEE
Q 041736          218 DLDAVFINNNRFSFELPDN--IGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL-PEEIGLLKNVTVF  294 (500)
Q Consensus       218 ~L~~L~l~~n~l~~~~p~~--~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L  294 (500)
                      .|+.|.|+.|.++-.--..  ....+|+.|+|.+|.....--.....+.. |++|||++|++-... -..++.++.|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~-L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT-LQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH-HhhccccCCcccccccccccccccchhhh
Confidence            5666666666665211111  12245667777766422222223333443 888888888876521 1456778888888


Q ss_pred             eccCcccCCC-Chhh-----hhCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEccCCcCccC
Q 041736          295 DVSYNKLMGE-LPDT-----IAEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       295 ~Ls~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      +++.+.+... +|..     ...+.+|++|++..|++...- -..+..+.+|+.|.+..|+|+-+
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            8888877631 1211     245678888888888885311 12345566777777778877644

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.07  E-value=5.1e-11  Score=110.41  Aligned_cols=128  Identities=19%  Similarity=0.196  Sum_probs=83.3

Q ss_pred             CcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEc
Q 041736          241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNV  320 (500)
Q Consensus       241 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  320 (500)
                      .|+.+||++|.|+ .+.++..-+++ ++.|+++.|.+...  ..+..+.+|+.|||++|.++ .+-.|-.++-++++|.|
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccc-eeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            4667777777776 45566666665 77777777777653  23666777777777777777 44455566777777777


Q ss_pred             ccCCCCCCCchhhcCCCCCcEEEccCCcCcc-----CCCCCccCCEEEcCCCCCCCCCCC
Q 041736          321 AHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG-----ESPVCLDLQGFDDKRNCLRDKPRQ  375 (500)
Q Consensus       321 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-----~~p~~~~L~~l~l~~N~l~~~~~~  375 (500)
                      ++|.|.. + ..+..+-+|..||+++|+|..     .|-...+|+.+.+.+|.+.+.+..
T Consensus       360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  360 AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            7777652 1 345556667777777777642     122344677777777777766543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.05  E-value=4.3e-11  Score=113.33  Aligned_cols=230  Identities=25%  Similarity=0.341  Sum_probs=165.2

Q ss_pred             hhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCC---cCCCcCch-------hccCCCCCcEEeccCCc
Q 041736          140 EELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNN---RFAGKFPY-------VVLGLPKLKFLDLRYNE  205 (500)
Q Consensus       140 ~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n---~l~~~~p~-------~l~~l~~L~~L~Ls~N~  205 (500)
                      ..+..+..++.|+|++|.|...    +...+.+.++|+..++++-   ++...+|.       .+..++.|++|+||.|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            4466788999999999999633    4556777889999999863   22223443       44566799999999999


Q ss_pred             CCCCCchhhc-----CCCCCeEEccCCCccCCCCCc-------------cC-CCCcceEEeccccccccC----chhhhc
Q 041736          206 FEGKIPKALF-----DKDLDAVFINNNRFSFELPDN-------------IG-NSPVSVLVLANNKFHGCL----PLSFGN  262 (500)
Q Consensus       206 l~g~~p~~~~-----~~~L~~L~l~~n~l~~~~p~~-------------~~-~~~L~~L~l~~n~l~~~~----p~~l~~  262 (500)
                      |.-.....+.     ..+|++|+|.+|.+.-.--..             .+ ..+|+++..+.|++...-    -..|..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            8755444332     279999999999886211111             11 156999999999987532    334455


Q ss_pred             ccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCCCchh--
Q 041736          263 MSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGTVPDS--  332 (500)
Q Consensus       263 l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~--  332 (500)
                      ... |+.+.++.|.|...    +-..+..+++|++|||..|-|+..    +...+..+++|+.|++++|.+...-...  
T Consensus       184 ~~~-leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  184 HPT-LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             ccc-cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            554 99999999998632    345678899999999999999743    3345667889999999999987533222  


Q ss_pred             --h-cCCCCCcEEEccCCcCccC--------CCCCccCCEEEcCCCCCC
Q 041736          333 --V-CSLPNLRNFSFDYNFFTGE--------SPVCLDLQGFDDKRNCLR  370 (500)
Q Consensus       333 --l-~~l~~L~~L~Ls~N~l~g~--------~p~~~~L~~l~l~~N~l~  370 (500)
                        + ...++|++|++.+|.++-.        +-....|..|++++|.+.
T Consensus       263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence              2 3468999999999998733        111335888999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.02  E-value=1e-10  Score=108.46  Aligned_cols=208  Identities=15%  Similarity=0.155  Sum_probs=127.3

Q ss_pred             CchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC-CcCCCCCchhhcC
Q 041736          138 LPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY-NEFEGKIPKALFD  216 (500)
Q Consensus       138 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~  216 (500)
                      ++-.+.-+++|+.+.++.+.-. .|-+....-+.|+++...+..++.. + .+--+..+..+.-+. .-.+|..-..+-.
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~~~-~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dT  282 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQDV-P-SLLPETILADPSGSEPSTSNGSALVSADT  282 (490)
T ss_pred             cccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccccc-c-cccchhhhcCccCCCCCccCCceEEecch
Confidence            4444555677777777766433 2222222234577777666554421 1 111111111111111 1111222111111


Q ss_pred             -CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEE
Q 041736          217 -KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF  294 (500)
Q Consensus       217 -~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  294 (500)
                       ..|++++|++|.++ .+..+... .+++.|++++|++...  ..+..+.+ |++|||++|.++. +-.+-..+-+++.|
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~-L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQ-LQLLDLSGNLLAE-CVGWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhccc-ceEeecccchhHh-hhhhHhhhcCEeee
Confidence             45677777777776 33333333 5678888888888732  33777776 9999999999886 34555678899999


Q ss_pred             eccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEccCCcCccCCCC
Q 041736          295 DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGESPV  355 (500)
Q Consensus       295 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~~p~  355 (500)
                      .|+.|.|. .+ +.+.++-+|..||+++|+|...- -..+++++-|+++.|.+|.+.+.+..
T Consensus       358 ~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  358 KLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             ehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            99999987 32 46778888999999999987321 23578899999999999999877653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=7.2e-11  Score=114.74  Aligned_cols=203  Identities=22%  Similarity=0.231  Sum_probs=143.1

Q ss_pred             cCCCCCCEEeCcCCcCCCcCc--hhccCCCCCcEEeccCCcCCCCCchhhc---CCCCCeEEccCCCccCCCCCccC--C
Q 041736          167 NKLKLLFELDLSNNRFAGKFP--YVVLGLPKLKFLDLRYNEFEGKIPKALF---DKDLDAVFINNNRFSFELPDNIG--N  239 (500)
Q Consensus       167 ~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~Ls~N~l~g~~p~~~~---~~~L~~L~l~~n~l~~~~p~~~~--~  239 (500)
                      .++.+|++..|.+..+.. ..  .....|++++.|||+.|-|..-.+..-+   .++|+.|+++.|++..-......  .
T Consensus       118 sn~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            567889999999988762 23  4667899999999999988732222111   18999999999998743322221  2


Q ss_pred             CCcceEEeccccccccCc-hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCCh--hhhhCCCCCc
Q 041736          240 SPVSVLVLANNKFHGCLP-LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP--DTIAEMTSLQ  316 (500)
Q Consensus       240 ~~L~~L~l~~n~l~~~~p-~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~  316 (500)
                      ..++.|.|+.|+++...- ..+..++. |+.|+|..|..-..-......++.|+.|||++|++-. .+  ...+.++.|+
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPs-l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPS-LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCc-HHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchh
Confidence            679999999999985322 23334554 9999999996433333445678899999999999873 33  4567899999


Q ss_pred             EEEcccCCCCCC-Cchh-----hcCCCCCcEEEccCCcCccC-----CCCCccCCEEEcCCCCCCCC
Q 041736          317 QLNVAHNMLSGT-VPDS-----VCSLPNLRNFSFDYNFFTGE-----SPVCLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       317 ~L~L~~N~l~g~-ip~~-----l~~l~~L~~L~Ls~N~l~g~-----~p~~~~L~~l~l~~N~l~~~  372 (500)
                      .|+++.+.+... +++.     ...+++|++|+++.|++...     +-...+|..|.+..|.+...
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            999999988742 2332     45678999999999998533     22233566666666666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.94  E-value=6.5e-11  Score=121.50  Aligned_cols=104  Identities=23%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      ..+..+++..|.+.. +-..+..+.+|+.|++.+|.|.+. ...+..+.+|++|+|++|.|+...  .+..+..|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhee
Confidence            344444555555543 222345555566666666655522 222445555666666666655331  2344445555666


Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCcc
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFS  230 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~  230 (500)
                      ++|.++ .+...-....|+.+++++|++.
T Consensus       148 ~~N~i~-~~~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  148 SGNLIS-DISGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             ccCcch-hccCCccchhhhcccCCcchhh
Confidence            666555 3332222344444455544444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=8.7e-10  Score=97.84  Aligned_cols=81  Identities=26%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhh-hCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEc
Q 041736          267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTI-AEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSF  344 (500)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~L  344 (500)
                      |+.|+|++|.|+..  +.+..+.+|++|++++|+|+ .+...+ ..+++|+.|+|++|+|...- -..+..+++|++|+|
T Consensus        44 L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L  120 (175)
T PF14580_consen   44 LEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSL  120 (175)
T ss_dssp             --EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-
T ss_pred             CCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeec
Confidence            44444444444432  23344444555555555554 222222 23444555555555443210 123344445555555


Q ss_pred             cCCcCc
Q 041736          345 DYNFFT  350 (500)
Q Consensus       345 s~N~l~  350 (500)
                      .+|.++
T Consensus       121 ~~NPv~  126 (175)
T PF14580_consen  121 EGNPVC  126 (175)
T ss_dssp             TT-GGG
T ss_pred             cCCccc
Confidence            555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.87  E-value=1.7e-10  Score=118.38  Aligned_cols=82  Identities=27%  Similarity=0.392  Sum_probs=36.9

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+++.|++.+|.|..... .+..+.+|++|+|++|.|+...  .+..+..|+.|++++|.++..  ..+..+.+|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence            3445555555555544211 1344455555555555554222  234444455555555555421  1223344555555


Q ss_pred             ccCCcCC
Q 041736          201 LRYNEFE  207 (500)
Q Consensus       201 Ls~N~l~  207 (500)
                      +++|++.
T Consensus       169 l~~n~i~  175 (414)
T KOG0531|consen  169 LSYNRIV  175 (414)
T ss_pred             CCcchhh
Confidence            5555544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.87  E-value=2.8e-09  Score=94.61  Aligned_cols=137  Identities=23%  Similarity=0.271  Sum_probs=48.9

Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC--CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG--NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      ..+.|. .++......++++|+|++|.++. +. .++  ..+|+.|++++|.++..  +.+..+.+ |++|++++|.|+.
T Consensus         5 t~~~i~-~~~~~~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~-L~~L~L~~N~I~~   78 (175)
T PF14580_consen    5 TANMIE-QIAQYNNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPR-LKTLDLSNNRISS   78 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S----TT----TT---EEE--SS---S
T ss_pred             cccccc-ccccccccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhh-hhhcccCCCCCCc
Confidence            334443 34444444678899999998873 32 233  35789999999998843  46777776 9999999999987


Q ss_pred             CCcccc-ccCCCccEEeccCcccCCC-ChhhhhCCCCCcEEEcccCCCCCCC---chhhcCCCCCcEEEcc
Q 041736          280 CLPEEI-GLLKNVTVFDVSYNKLMGE-LPDTIAEMTSLQQLNVAHNMLSGTV---PDSVCSLPNLRNFSFD  345 (500)
Q Consensus       280 ~~p~~~-~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~i---p~~l~~l~~L~~L~Ls  345 (500)
                      . .+.+ ..+++|++|+|++|+|... .-..+..+++|+.|+|.+|.+...-   ...+..+++|+.||-.
T Consensus        79 i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   79 I-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             --CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             c-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            3 3344 4688999999999998742 1245677889999999999887431   1245678888887643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=4.8e-09  Score=76.52  Aligned_cols=60  Identities=33%  Similarity=0.537  Sum_probs=37.8

Q ss_pred             CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcC
Q 041736          147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF  206 (500)
Q Consensus       147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  206 (500)
                      +|++|++++|+|+..-+..|.++++|++|+|++|.++...+..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            566666666666644445666666666666666666655555666666666666666653

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.76  E-value=1.4e-10  Score=118.93  Aligned_cols=128  Identities=21%  Similarity=0.271  Sum_probs=98.4

Q ss_pred             CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEE
Q 041736          240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN  319 (500)
Q Consensus       240 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  319 (500)
                      .+|...+.+.|.+. .+..++.-+.. |+.|+|++|++...  ..+..++.|++|||++|.+. .+|..-..-.+|..|.
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~a-le~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPA-LESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHH-hhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeee
Confidence            45777788888877 56677777776 99999999999986  37899999999999999998 5554322234599999


Q ss_pred             cccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC-----CccCCEEEcCCCCCCCCCC
Q 041736          320 VAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-----CLDLQGFDDKRNCLRDKPR  374 (500)
Q Consensus       320 L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-----~~~L~~l~l~~N~l~~~~~  374 (500)
                      |++|.++..  ..+.++.+|+.||+++|.|.+---.     ...|..|++.+|.+...+.
T Consensus       239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence            999998732  3578899999999999988764322     2257788888888866544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=9.6e-09  Score=74.89  Aligned_cols=61  Identities=25%  Similarity=0.459  Sum_probs=56.5

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcC
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF  182 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  182 (500)
                      ++|+.|++++|.+...-+..|..+++|++|+|++|.++...+..|.++++|++|+|++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3688999999999987778999999999999999999988888999999999999999985

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.57  E-value=1.5e-08  Score=93.05  Aligned_cols=109  Identities=26%  Similarity=0.392  Sum_probs=71.1

Q ss_pred             CcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCCCC---ccCC-------ccccCCCCCCEEeCcCCcCCCcCc
Q 041736          122 RTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNRFC---GTLP-------RSFNKLKLLFELDLSNNRFAGKFP  187 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~---~~~p-------~~l~~l~~L~~L~Ls~n~l~~~~p  187 (500)
                      ..++.+|||+|.|...    +...+++-.+|+..++++-...   ..++       ..+.++++|+..+||+|.|....+
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            5688999999998554    3345566678888888764322   1222       245678889999999998876655


Q ss_pred             h----hccCCCCCcEEeccCCcCC----CCCchhhcC----------CCCCeEEccCCCcc
Q 041736          188 Y----VVLGLPKLKFLDLRYNEFE----GKIPKALFD----------KDLDAVFINNNRFS  230 (500)
Q Consensus       188 ~----~l~~l~~L~~L~Ls~N~l~----g~~p~~~~~----------~~L~~L~l~~n~l~  230 (500)
                      .    .+..-+.|++|.|++|.+.    |.|...+++          +.|+.+.+..|++.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            4    4456678888888888764    122222221          45666666666654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.52  E-value=1.2e-07  Score=104.61  Aligned_cols=106  Identities=22%  Similarity=0.251  Sum_probs=86.6

Q ss_pred             CcEEEEECCCCC--CcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          122 RTVAGIDLNHGD--IASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       122 ~~l~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      ..++.|-+.+|.  +.......|..++.|++|||++|.=-+.+|..+++|-+||+|+|++..+. .+|..+.+|..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            468888888886  55545556888999999999998766789999999999999999999998 889999999999999


Q ss_pred             eccCCcCCCCCchhhc-CCCCCeEEccCCC
Q 041736          200 DLRYNEFEGKIPKALF-DKDLDAVFINNNR  228 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~-~~~L~~L~l~~n~  228 (500)
                      ++.++.....++.... ..+|++|.+....
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            9998876555555444 4889998886554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.49  E-value=1e-07  Score=105.06  Aligned_cols=126  Identities=22%  Similarity=0.245  Sum_probs=69.7

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCC--CCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNR--FCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      ..++++.+-+|.+... +.. ...++|++|-+.+|.  +.....+.|..++.|++|||++|.--+.+|..+++|-+|++|
T Consensus       523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            3445555555554321 111 122356666666664  332333345566667777777665555666666666677777


Q ss_pred             eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccC-CCCcceEEeccc
Q 041736          200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANN  250 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n  250 (500)
                      +|++..++ .+|..+.. ..|.+|++..+.....++.... ..+|++|.+...
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            77766666 66666555 5666666666554444433333 355666665443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.42  E-value=1.5e-07  Score=86.67  Aligned_cols=213  Identities=23%  Similarity=0.297  Sum_probs=145.4

Q ss_pred             hhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCC---CcC-------chhccCCCCCcEEeccCCc
Q 041736          140 EELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFA---GKF-------PYVVLGLPKLKFLDLRYNE  205 (500)
Q Consensus       140 ~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~---~~~-------p~~l~~l~~L~~L~Ls~N~  205 (500)
                      ..+..+..++.++|++|.|...    +...+.+-.+|+..+++.-...   ..+       -..+.+++.|+..+||.|.
T Consensus        24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence            3456689999999999999754    3344566678888888764221   222       2456788999999999999


Q ss_pred             CCCCCchhhcC-----CCCCeEEccCCCccCCCCCccC--------------CCCcceEEeccccccccCchh----hhc
Q 041736          206 FEGKIPKALFD-----KDLDAVFINNNRFSFELPDNIG--------------NSPVSVLVLANNKFHGCLPLS----FGN  262 (500)
Q Consensus       206 l~g~~p~~~~~-----~~L~~L~l~~n~l~~~~p~~~~--------------~~~L~~L~l~~n~l~~~~p~~----l~~  262 (500)
                      |....+..+..     +.|++|.+++|.+.-.--.-++              ...|+++....|++...-...    +..
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s  183 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES  183 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence            98777766543     7999999999987532222222              156899999999887432222    222


Q ss_pred             ccccCcEEEeccCCCCCC-----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCCCchh-
Q 041736          263 MSRTLNEVILTNNGLHSC-----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGTVPDS-  332 (500)
Q Consensus       263 l~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip~~-  332 (500)
                      -. .|+++.+..|.|.-.     +-..+..+.+|+.|||..|-++-.    +...+...+.|+.|.+.+|.++..--.. 
T Consensus       184 h~-~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         184 HE-NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             hc-CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            22 488999999988632     112345678999999999988742    2233455677899999999886432221 


Q ss_pred             ---h--cCCCCCcEEEccCCcCccCC
Q 041736          333 ---V--CSLPNLRNFSFDYNFFTGES  353 (500)
Q Consensus       333 ---l--~~l~~L~~L~Ls~N~l~g~~  353 (500)
                         |  ...++|..|-+.+|.+.|.+
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~~~~~  288 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNERRGGI  288 (388)
T ss_pred             HHHhhhhcCCCccccccchhhhcCce
Confidence               1  23567888888898887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=5.3e-09  Score=97.23  Aligned_cols=59  Identities=19%  Similarity=0.190  Sum_probs=33.9

Q ss_pred             ccCCCccEEeccCcc-cCCCChhhhhCCCCCcEEEcccCCCCCCCch---hhcCCCCCcEEEccC
Q 041736          286 GLLKNVTVFDVSYNK-LMGELPDTIAEMTSLQQLNVAHNMLSGTVPD---SVCSLPNLRNFSFDY  346 (500)
Q Consensus       286 ~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~---~l~~l~~L~~L~Ls~  346 (500)
                      ..+++|..|||++|. ++...-..|.+++.|++|.|+.|..  .+|+   .+...++|.+||+.+
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            456667777776653 3333444556666777777766643  3333   244556677776554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=8.2e-09  Score=95.97  Aligned_cols=74  Identities=19%  Similarity=0.098  Sum_probs=46.9

Q ss_pred             cCcEEEeccCC-CCCCCccccccCCCccEEeccCcccCCCChhh---hhCCCCCcEEEcccCCCCCCCchhhcCCCCCcE
Q 041736          266 TLNEVILTNNG-LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDT---IAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN  341 (500)
Q Consensus       266 ~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~  341 (500)
                      +|.+|||++|. ++......|-+++.|++|.++.|..  .+|..   +...++|.+|++.++--.+..--....+++|+.
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki  391 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI  391 (419)
T ss_pred             ceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence            48888888765 4444456677888899998888863  45554   456788888888765333222222334555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.34  E-value=6e-09  Score=107.26  Aligned_cols=175  Identities=19%  Similarity=0.193  Sum_probs=97.5

Q ss_pred             CCcCcEEEEECCCCCCcccCchhhcCC-CCCCEEEcCCCCCC---ccCCccccC------CCCCCEEeCcCCcCCCcCch
Q 041736          119 HSIRTVAGIDLNHGDIASYLPEELGLL-ADIALFHVNTNRFC---GTLPRSFNK------LKLLFELDLSNNRFAGKFPY  188 (500)
Q Consensus       119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~---~~~p~~l~~------l~~L~~L~Ls~n~l~~~~p~  188 (500)
                      ..++.|++|.|.++++...  ..+..+ ..|++|...+. +.   ..+....+.      --.|.+.+.+.|++. .+-.
T Consensus       106 fpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~  181 (1096)
T KOG1859|consen  106 FPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDE  181 (1096)
T ss_pred             ccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHH
Confidence            3456778888888777431  111111 23444443322 11   011111111      124667777778777 5556


Q ss_pred             hccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCc-cCCCCcceEEeccccccccCchhhhcccccC
Q 041736          189 VVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDN-IGNSPVSVLVLANNKFHGCLPLSFGNMSRTL  267 (500)
Q Consensus       189 ~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L  267 (500)
                      ++.-++.|+.|||++|+++ .........+|++|||+.|.+.. +|.. ....+|+.|++++|.++..  ..+.++.+ |
T Consensus       182 SLqll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L~lrnN~l~tL--~gie~Lks-L  256 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLLNLRNNALTTL--RGIENLKS-L  256 (1096)
T ss_pred             HHHHHHHhhhhccchhhhh-hhHHHHhcccccccccccchhcc-ccccchhhhhheeeeecccHHHhh--hhHHhhhh-h
Confidence            6777778888888888887 33333334677777777777762 3321 2224577777777766532  34555654 7


Q ss_pred             cEEEeccCCCCCCC-ccccccCCCccEEeccCcccC
Q 041736          268 NEVILTNNGLHSCL-PEEIGLLKNVTVFDVSYNKLM  302 (500)
Q Consensus       268 ~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~  302 (500)
                      +.||++.|-|.+.- -.-++.|..|+.|+|.+|.+-
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            77777777666531 122345566666777776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=3.5e-07  Score=85.30  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=41.7

Q ss_pred             CcEEEeccCCCCCCC-ccccccCCCccEEeccCcccCCC-ChhhhhCCCCCcEEEcccCCCCCCCch------hhcCCCC
Q 041736          267 LNEVILTNNGLHSCL-PEEIGLLKNVTVFDVSYNKLMGE-LPDTIAEMTSLQQLNVAHNMLSGTVPD------SVCSLPN  338 (500)
Q Consensus       267 L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~g~ip~------~l~~l~~  338 (500)
                      +..+.+..|-+...- -.....++.+..|+|+.|+|... --..+.+++.|..|.+++|.+.+.+..      -++.+++
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~  280 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK  280 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence            555555656443321 12233455566677777776531 113456677777777777766543322      2455666


Q ss_pred             CcEEE
Q 041736          339 LRNFS  343 (500)
Q Consensus       339 L~~L~  343 (500)
                      ++.|+
T Consensus       281 v~vLN  285 (418)
T KOG2982|consen  281 VQVLN  285 (418)
T ss_pred             eEEec
Confidence            66654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.15  E-value=3.7e-07  Score=75.67  Aligned_cols=108  Identities=20%  Similarity=0.272  Sum_probs=76.8

Q ss_pred             CcCcEEEEECCCCCCcccCchhh-cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736          120 SIRTVAGIDLNHGDIASYLPEEL-GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF  198 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  198 (500)
                      +..+++.++|++|.+.. +|..| ..++.++.|+|++|.|+ .+|.++..++.|+.|++++|.+. ..|..+..|.+|..
T Consensus        51 ~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDM  127 (177)
T ss_pred             CCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHH
Confidence            34678888888888866 44444 45668888888888887 77888888888888888888887 67777777888888


Q ss_pred             EeccCCcCCCCCchhhcCCCC-CeEEccCCCccC
Q 041736          199 LDLRYNEFEGKIPKALFDKDL-DAVFINNNRFSF  231 (500)
Q Consensus       199 L~Ls~N~l~g~~p~~~~~~~L-~~L~l~~n~l~~  231 (500)
                      |+..+|.+. .++..++...+ -...++++.+.+
T Consensus       128 Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~  160 (177)
T KOG4579|consen  128 LDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD  160 (177)
T ss_pred             hcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence            888888776 66655554322 223344444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.13  E-value=1.2e-07  Score=78.43  Aligned_cols=78  Identities=22%  Similarity=0.356  Sum_probs=33.6

Q ss_pred             EEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc
Q 041736          269 EVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF  348 (500)
Q Consensus       269 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~  348 (500)
                      ..+|++|.+....+.....++.++.|+|++|.|+ .+|.++..++.|+.|+++.|.|. ..|..+..+.+|..||..+|.
T Consensus        57 ~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   57 KISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             EEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            3344444444422222222334444444444444 44444444444444444444444 333333334444444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=2.9e-05  Score=77.53  Aligned_cols=137  Identities=15%  Similarity=0.193  Sum_probs=80.2

Q ss_pred             hhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC-cCCCCCchhhcCCC
Q 041736          140 EELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN-EFEGKIPKALFDKD  218 (500)
Q Consensus       140 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~g~~p~~~~~~~  218 (500)
                      ..+..+.++++|++++|.|+ .+|. +  -.+|++|+++++.--..+|..+.  .+|++|++++| .+. .+|     ..
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP-----~s  113 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP-----ES  113 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc-----cc
Confidence            34556789999999999887 5552 1  23699999988443336665553  58999999988 444 444     45


Q ss_pred             CCeEEccCCCcc--CCCCCccCCCCcceEEecccccc--ccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEE
Q 041736          219 LDAVFINNNRFS--FELPDNIGNSPVSVLVLANNKFH--GCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF  294 (500)
Q Consensus       219 L~~L~l~~n~l~--~~~p~~~~~~~L~~L~l~~n~l~--~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  294 (500)
                      |+.|++..+...  +.+|.     +|+.|.+.+++..  ..++   ..++.+|++|++++|.... +|..+-  .+|+.|
T Consensus       114 Le~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L  182 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPN-----GLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNII-LPEKLP--ESLQSI  182 (426)
T ss_pred             cceEEeCCCCCcccccCcc-----hHhheeccccccccccccc---cccCCcccEEEecCCCccc-Cccccc--ccCcEE
Confidence            777777655442  23333     3555555432211  0111   1233357777777766542 222222  367777


Q ss_pred             eccCc
Q 041736          295 DVSYN  299 (500)
Q Consensus       295 ~Ls~n  299 (500)
                      +++.+
T Consensus       183 ~ls~n  187 (426)
T PRK15386        183 TLHIE  187 (426)
T ss_pred             Eeccc
Confidence            77665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=1.1e-05  Score=54.02  Aligned_cols=36  Identities=42%  Similarity=0.556  Sum_probs=16.0

Q ss_pred             CCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCC
Q 041736          171 LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       171 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  207 (500)
                      +|++|+|++|+|+ .++..+.+|++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 33334444555555555555444

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=1.4e-06  Score=81.32  Aligned_cols=210  Identities=20%  Similarity=0.227  Sum_probs=114.1

Q ss_pred             cEEEEECCCCCCccc-Cchhhc-CCCCCCEEEcCCCCCCc--cCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736          123 TVAGIDLNHGDIASY-LPEELG-LLADIALFHVNTNRFCG--TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF  198 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~-~p~~l~-~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  198 (500)
                      .++-|.+.++.|... .-..|+ ..++++.|||.+|.|+.  +|-..+.+|+.|++|+|+.|.+...|-..-..+.+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            344555666655322 112233 45677888888887762  33344567777888888888777443322134567777


Q ss_pred             EeccCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCc--hhhhcccccCcEEEecc
Q 041736          199 LDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLP--LSFGNMSRTLNEVILTN  274 (500)
Q Consensus       199 L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p--~~l~~l~~~L~~L~Ls~  274 (500)
                      |.|.+..+.-.--.++..  +.+++|+++.|++.             .+++..|.+....+  ..+..... +..+.++-
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r-------------q~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~~~  191 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR-------------QLNLDDNCIEDWSTEVLTLHQLPC-LEQLWLNK  191 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh-------------hhccccccccccchhhhhhhcCCc-HHHHHHHH
Confidence            777776654221111111  45566666666443             22223332221110  00011111 22222333


Q ss_pred             CCCCCCCccccccCCCccEEeccCcccCCCC-hhhhhCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEccCCcCccC
Q 041736          275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL-PDTIAEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      |++..       .++++..+-+..|.+...- -.....++.+.-|+|+.|+|...- -+.+..+++|+.|.+++|.+...
T Consensus       192 ~~l~r-------~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  192 NKLSR-------IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             HhHHh-------hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            33333       3456777777777665321 123345667778899999886421 24578889999999999988654


Q ss_pred             C
Q 041736          353 S  353 (500)
Q Consensus       353 ~  353 (500)
                      +
T Consensus       265 l  265 (418)
T KOG2982|consen  265 L  265 (418)
T ss_pred             c
Confidence            3

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.87  E-value=2e-05  Score=52.63  Aligned_cols=38  Identities=34%  Similarity=0.626  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCC---CCCCCcCceecC
Q 041736           76 SAYIALQAWKKAIISDPWNLTSNWVG---CYVCNYTGVFCA  113 (500)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~~~~~~w~~---~~~c~~~gv~c~  113 (500)
                      ++..||++||..+..++...+.+|..   .++|+|.||+|+
T Consensus         3 ~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    3 QDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             HHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            46778888888877677788999974   599999999994

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.82  E-value=2.2e-05  Score=52.62  Aligned_cols=35  Identities=29%  Similarity=0.598  Sum_probs=13.6

Q ss_pred             ccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736          291 VTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS  326 (500)
Q Consensus       291 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  326 (500)
                      |++|++++|+|+ .++..++++++|++|++++|.|+
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23333444444444444444443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.68  E-value=0.00018  Score=72.06  Aligned_cols=132  Identities=19%  Similarity=0.281  Sum_probs=85.5

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC-cCCCcCchhccCCCCCcEEe
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN-RFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~  200 (500)
                      .+++.|++++|.++. +|.   --.+|++|.++++.--..+|+.+  ..+|++|++++| .+. .+|      .+|+.|+
T Consensus        52 ~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEE
Confidence            568899999998765 342   23479999999853323666655  257999999998 554 444      3577888


Q ss_pred             ccCCcCC--CCCchhhcCCCCCeEEccCCCccC--CCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCC
Q 041736          201 LRYNEFE--GKIPKALFDKDLDAVFINNNRFSF--ELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNG  276 (500)
Q Consensus       201 Ls~N~l~--g~~p~~~~~~~L~~L~l~~n~l~~--~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~  276 (500)
                      ++.+...  +.+|     .+|+.|.+.+++...  .++. .--.+|++|++++|... .+|..+.   .+|++|+++.+.
T Consensus       119 L~~n~~~~L~~LP-----ssLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i-~LP~~LP---~SLk~L~ls~n~  188 (426)
T PRK15386        119 IKGSATDSIKNVP-----NGLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNI-ILPEKLP---ESLQSITLHIEQ  188 (426)
T ss_pred             eCCCCCcccccCc-----chHhheecccccccccccccc-ccCCcccEEEecCCCcc-cCccccc---ccCcEEEecccc
Confidence            8776643  2344     467788775433211  1111 11157999999998865 3444333   359999998764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.49  E-value=0.00021  Score=63.49  Aligned_cols=90  Identities=19%  Similarity=0.276  Sum_probs=63.2

Q ss_pred             hhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC--CCchhhcCCC
Q 041736          260 FGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG--TVPDSVCSLP  337 (500)
Q Consensus       260 l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g--~ip~~l~~l~  337 (500)
                      ++....+...+||++|.+...  ..|..+..|.+|.|++|+|+..-|..-.-+++|+.|.|.+|+|..  .+ +-+..++
T Consensus        37 lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p  113 (233)
T KOG1644|consen   37 LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCP  113 (233)
T ss_pred             ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCC
Confidence            444444577888888887653  456677888888888888885555544556778888888888762  12 2366778


Q ss_pred             CCcEEEccCCcCccC
Q 041736          338 NLRNFSFDYNFFTGE  352 (500)
Q Consensus       338 ~L~~L~Ls~N~l~g~  352 (500)
                      .|++|.+-+|..+..
T Consensus       114 ~L~~Ltll~Npv~~k  128 (233)
T KOG1644|consen  114 KLEYLTLLGNPVEHK  128 (233)
T ss_pred             ccceeeecCCchhcc
Confidence            888888888877643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.31  E-value=0.00034  Score=62.27  Aligned_cols=82  Identities=28%  Similarity=0.322  Sum_probs=53.0

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc--hhccCCCCCcEEe
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP--YVVLGLPKLKFLD  200 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~  200 (500)
                      ....+||++|++...  +.|..+.+|++|.|++|+|+.+-|.--.-+.+|+.|.|.+|+|. .+-  .-+..++.|++|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            445677888777543  34666777888888888887554443344566778888877776 211  1245567777777


Q ss_pred             ccCCcCC
Q 041736          201 LRYNEFE  207 (500)
Q Consensus       201 Ls~N~l~  207 (500)
                      +-+|..+
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            7777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=0.0001  Score=79.68  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=63.9

Q ss_pred             CCcceEEecccccccc-CchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC-CChhhhhCCCCCcE
Q 041736          240 SPVSVLVLANNKFHGC-LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG-ELPDTIAEMTSLQQ  317 (500)
Q Consensus       240 ~~L~~L~l~~n~l~~~-~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~  317 (500)
                      ..|+.|.+.+-.+... .-....++++ |..||+|+++++..  ..+++|++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpN-L~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPN-LRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCc-cceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            3466666665444321 1122334454 77777777777653  556777777777776665553 22234566777777


Q ss_pred             EEcccCCCCCCC--c----hhhcCCCCCcEEEccCCcCccC
Q 041736          318 LNVAHNMLSGTV--P----DSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       318 L~L~~N~l~g~i--p----~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      ||+|........  .    +.-..+++|+.||.|++.+++.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            777766544211  1    1223567777777777766654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.03  E-value=0.00016  Score=78.10  Aligned_cols=132  Identities=15%  Similarity=0.238  Sum_probs=79.4

Q ss_pred             CcEEEEECCCCCCc-ccCchhhc-CCCCCCEEEcCCCCCCc-cCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736          122 RTVAGIDLNHGDIA-SYLPEELG-LLADIALFHVNTNRFCG-TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF  198 (500)
Q Consensus       122 ~~l~~L~L~~n~l~-~~~p~~l~-~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  198 (500)
                      .+|++||+++...- ..-+..++ .|+.|+.|.+.+-.+.. ..-....++++|..||+|+.+++..  ..++.|++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            56788888876542 22233343 57888888888876642 2233446778888888888888744  56778888888


Q ss_pred             EeccCCcCCC--CCchhhcCCCCCeEEccCCCccCCC--CC-----ccCCCCcceEEecccccccc
Q 041736          199 LDLRYNEFEG--KIPKALFDKDLDAVFINNNRFSFEL--PD-----NIGNSPVSVLVLANNKFHGC  255 (500)
Q Consensus       199 L~Ls~N~l~g--~~p~~~~~~~L~~L~l~~n~l~~~~--p~-----~~~~~~L~~L~l~~n~l~~~  255 (500)
                      |.+.+=.|..  .+-+.+..++|++||++........  ..     .....+|+.||.+++.+.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            8877766652  2222223378888888766554211  00     00113466666666655543

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=96.64  E-value=0.022  Score=56.99  Aligned_cols=36  Identities=14%  Similarity=0.376  Sum_probs=18.2

Q ss_pred             CCCCCCCCCCcCceecCCCCCCCCcCcEEEEECCCCCCc
Q 041736           97 SNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIA  135 (500)
Q Consensus        97 ~~w~~~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~  135 (500)
                      ..|.-..+|   |+.|-..-...+..-++..||.++.|.
T Consensus        55 ~~W~~~~~~---Gal~lVkD~~~rsyFlrl~di~~~rli   90 (569)
T KOG3671|consen   55 NHWNKTGLC---GALCLVKDNAQRSYFLRLVDIVNNRLI   90 (569)
T ss_pred             hhhccccCc---eeEEEeeccccceeeeEEeeecCceee
Confidence            346654444   455532111223345677777777653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.00015  Score=67.51  Aligned_cols=89  Identities=16%  Similarity=0.137  Sum_probs=63.4

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcC-chhccCCCCCcEE
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF-PYVVLGLPKLKFL  199 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L  199 (500)
                      +.+++.|++-+++|..+  ....+++.|++|.|+-|.|+..-  .|..+++|++|+|..|.|...- -..+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34567777777777654  23457888888888888887443  4677888888888888887321 1256788888888


Q ss_pred             eccCCcCCCCCchh
Q 041736          200 DLRYNEFEGKIPKA  213 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~  213 (500)
                      .|..|.-.|.-+..
T Consensus        94 WL~ENPCc~~ag~n  107 (388)
T KOG2123|consen   94 WLDENPCCGEAGQN  107 (388)
T ss_pred             hhccCCcccccchh
Confidence            88888877665543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.35  E-value=0.0029  Score=58.74  Aligned_cols=61  Identities=30%  Similarity=0.438  Sum_probs=32.0

Q ss_pred             CCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC--cCCCcCchhccCCCCCcEEeccCCcCC
Q 041736          145 LADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN--RFAGKFPYVVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       145 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~  207 (500)
                      +..|+.|++.+..++..  ..|-.|++|++|+++.|  ++++.+.-....+++|++|+|++|++.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34444444544444411  12344556666666666  444444444444566666666666664

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.31  E-value=0.0026  Score=59.04  Aligned_cols=82  Identities=20%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             CcceEEeccccccccCchhhhcccccCcEEEeccC--CCCCCCccccccCCCccEEeccCcccCC--CChhhhhCCCCCc
Q 041736          241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN--GLHSCLPEEIGLLKNVTVFDVSYNKLMG--ELPDTIAEMTSLQ  316 (500)
Q Consensus       241 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~  316 (500)
                      .|+.|.+.+..++..  ..|-.+++ |++|+++.|  .+.+-+.-....+++|++|++++|+|..  ++ ..+..+.+|.
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~-LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPK-LKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLK  119 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcch-hhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchh
Confidence            344444444444421  23344444 666666666  3333333333444566666666665552  01 1123344455


Q ss_pred             EEEcccCCCC
Q 041736          317 QLNVAHNMLS  326 (500)
Q Consensus       317 ~L~L~~N~l~  326 (500)
                      .|++.+|..+
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            5555555444

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=96.27  E-value=0.05  Score=54.62  Aligned_cols=13  Identities=8%  Similarity=0.097  Sum_probs=8.8

Q ss_pred             ccCCHHHHHHHHH
Q 041736           32 GVFLEAEAAFIKQ   44 (500)
Q Consensus        32 ~~~~~~~~~~l~~   44 (500)
                      ..|+..|-++|.+
T Consensus        19 ~lLt~~ene~lf~   31 (569)
T KOG3671|consen   19 TLLTSEENETLFK   31 (569)
T ss_pred             cccchhHHHHHHH
Confidence            4477888888544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.00047  Score=64.25  Aligned_cols=96  Identities=19%  Similarity=0.195  Sum_probs=45.5

Q ss_pred             cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCCh--hhhhCCCCCcEEE
Q 041736          242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP--DTIAEMTSLQQLN  319 (500)
Q Consensus       242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~  319 (500)
                      ++.|++.+++++++  .-..+|.. |+.|.|+-|+|+..  ..+..+++|++|.|..|.|.. +-  .-+.++++|+.|.
T Consensus        21 vkKLNcwg~~L~DI--sic~kMp~-lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDI--SICEKMPL-LEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTLW   94 (388)
T ss_pred             hhhhcccCCCccHH--HHHHhccc-ceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhHh
Confidence            44555555555432  11223333 55555555555543  334555555555555555552 21  1234555555555


Q ss_pred             cccCCCCCCCch-----hhcCCCCCcEEE
Q 041736          320 VAHNMLSGTVPD-----SVCSLPNLRNFS  343 (500)
Q Consensus       320 L~~N~l~g~ip~-----~l~~l~~L~~L~  343 (500)
                      |..|.-.|.-+.     .+..+++|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            555544443322     234445555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.83  E-value=0.031  Score=46.87  Aligned_cols=54  Identities=11%  Similarity=0.153  Sum_probs=17.8

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCc
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLS  178 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  178 (500)
                      +|+.+.+.. .+...-...|..+.+|+.+++.++ +...--..|.++.+|+++.+.
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            344444442 233333334444444444444443 322222334444444444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.82  E-value=7.1e-05  Score=77.41  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=36.4

Q ss_pred             EEEEECCCCCCcccCc----hhhcCCCCCCEEEcCCCCCCccCC----ccccCC-CCCCEEeCcCCcCCCc----Cchhc
Q 041736          124 VAGIDLNHGDIASYLP----EELGLLADIALFHVNTNRFCGTLP----RSFNKL-KLLFELDLSNNRFAGK----FPYVV  190 (500)
Q Consensus       124 l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l  190 (500)
                      +..|+|.+|.+.....    ..+..+..|+.|++++|.+.+.--    ..+... ..|++|++..|.+++.    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            4555566665543322    223444555555555555542211    111111 3344455555554432    22333


Q ss_pred             cCCCCCcEEeccCCcC
Q 041736          191 LGLPKLKFLDLRYNEF  206 (500)
Q Consensus       191 ~~l~~L~~L~Ls~N~l  206 (500)
                      .....|+.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            3344455555555544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.38  E-value=0.00017  Score=74.65  Aligned_cols=84  Identities=18%  Similarity=0.126  Sum_probs=52.3

Q ss_pred             CCCEEEcCCCCCCccC----CccccCCCCCCEEeCcCCcCCCcCc----hhccCC-CCCcEEeccCCcCCCCCchhh---
Q 041736          147 DIALFHVNTNRFCGTL----PRSFNKLKLLFELDLSNNRFAGKFP----YVVLGL-PKLKFLDLRYNEFEGKIPKAL---  214 (500)
Q Consensus       147 ~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~Ls~N~l~g~~p~~~---  214 (500)
                      .+..|.|.+|.+....    -..+..+..|+.|++++|.+.+.--    ..+... ..|++|++..|.+++.--..+   
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3778888888886432    3345567788888888888874322    223333 557778888887764332222   


Q ss_pred             -cC-CCCCeEEccCCCcc
Q 041736          215 -FD-KDLDAVFINNNRFS  230 (500)
Q Consensus       215 -~~-~~L~~L~l~~n~l~  230 (500)
                       .. ..+++++++.|.+.
T Consensus       168 L~~~~~l~~l~l~~n~l~  185 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLI  185 (478)
T ss_pred             HhcccchhHHHHHhcccc
Confidence             11 56677777777664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.25  E-value=0.0078  Score=33.56  Aligned_cols=17  Identities=29%  Similarity=0.548  Sum_probs=7.5

Q ss_pred             ccEEeccCcccCCCChhh
Q 041736          291 VTVFDVSYNKLMGELPDT  308 (500)
Q Consensus       291 L~~L~Ls~n~l~~~~p~~  308 (500)
                      |++|||++|+|+ .+|.+
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            444444444444 34433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.14  E-value=0.0082  Score=33.47  Aligned_cols=18  Identities=39%  Similarity=0.469  Sum_probs=8.3

Q ss_pred             CCEEeCcCCcCCCcCchhc
Q 041736          172 LFELDLSNNRFAGKFPYVV  190 (500)
Q Consensus       172 L~~L~Ls~n~l~~~~p~~l  190 (500)
                      |++|||++|+|+ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            444555555444 444333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.82  E-value=0.076  Score=44.45  Aligned_cols=105  Identities=10%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             hhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--C
Q 041736          140 EELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--K  217 (500)
Q Consensus       140 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~  217 (500)
                      ..|.++.+|+.+.+.. .+...-...|.++.+|+.+++.++ +...-...|.++.+|+.+.+.. .+. .+....+.  .
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            3577778899999885 566455567888888999998875 6645556778887899999865 433 44444444  7


Q ss_pred             CCCeEEccCCCccCCCCCccCCCCcceEEecc
Q 041736          218 DLDAVFINNNRFSFELPDNIGNSPVSVLVLAN  249 (500)
Q Consensus       218 ~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~  249 (500)
                      +|+.+.+..+ +...-...+...+++.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNCNLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT-T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCCCceEEEECC
Confidence            8888888665 432223344445777777664

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=94.37  E-value=0.0029  Score=62.33  Aligned_cols=245  Identities=16%  Similarity=0.152  Sum_probs=132.7

Q ss_pred             CcEEEEECCCCCCcccCc--hhhcCCCCCCEEEcCCCC-CCccCCccc-cCCCCCCEEeCcCC-cCCCcCch-hccCCCC
Q 041736          122 RTVAGIDLNHGDIASYLP--EELGLLADIALFHVNTNR-FCGTLPRSF-NKLKLLFELDLSNN-RFAGKFPY-VVLGLPK  195 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~~p~-~l~~l~~  195 (500)
                      ..++.|.|.++.-.+.-+  ....+++++++|++.++. ++...-..+ ..+.+|++|+|..+ .++...-. ....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            457788888765444322  234577888888888774 333222223 24677888888773 34432222 2345778


Q ss_pred             CcEEeccCC-cCCCCCchhhcC--CC--------------------------CCeEEccCCC-ccCCCC--CccCCCCcc
Q 041736          196 LKFLDLRYN-EFEGKIPKALFD--KD--------------------------LDAVFINNNR-FSFELP--DNIGNSPVS  243 (500)
Q Consensus       196 L~~L~Ls~N-~l~g~~p~~~~~--~~--------------------------L~~L~l~~n~-l~~~~p--~~~~~~~L~  243 (500)
                      |++|+++++ +++|.--..+..  ..                          +..+++.++. ++..--  -.-+...|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            888888876 344311111111  11                          2223332331 111100  001124577


Q ss_pred             eEEeccccc-cccCchhhhcccccCcEEEeccCCC-CCCCcccc-ccCCCccEEeccCcccC--CCChhhhhCCCCCcEE
Q 041736          244 VLVLANNKF-HGCLPLSFGNMSRTLNEVILTNNGL-HSCLPEEI-GLLKNVTVFDVSYNKLM--GELPDTIAEMTSLQQL  318 (500)
Q Consensus       244 ~L~l~~n~l-~~~~p~~l~~l~~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L  318 (500)
                      +|..+++.. +...-..++.-..+|+.|.++.++. +..-...+ .+...|+.+|+..+...  +++-..-.+++.|++|
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            777776543 2223344554444699999998873 33222222 35678999999887653  1232333467889999


Q ss_pred             EcccCCCCCCC-----chhhcCCCCCcEEEccCCcCccCC-----CCCccCCEEEcCC
Q 041736          319 NVAHNMLSGTV-----PDSVCSLPNLRNFSFDYNFFTGES-----PVCLDLQGFDDKR  366 (500)
Q Consensus       319 ~L~~N~l~g~i-----p~~l~~l~~L~~L~Ls~N~l~g~~-----p~~~~L~~l~l~~  366 (500)
                      .|+++.+....     ...-+.+..|..+.|++....-+.     ..|.+|+.+++.+
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            99988653221     223355667888888887654321     2244566665543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.54  E-value=0.0019  Score=58.74  Aligned_cols=88  Identities=17%  Similarity=0.235  Sum_probs=74.3

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      ...+.+++.||++.|.+.. +-..|+.++.|..|+++.|.+. ..|..++.+..++.+++.+|+++ ..|.++..++.++
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            3456889999999998754 3345677888999999999987 78888999999999999999998 8899999999999


Q ss_pred             EEeccCCcCCC
Q 041736          198 FLDLRYNEFEG  208 (500)
Q Consensus       198 ~L~Ls~N~l~g  208 (500)
                      ++++..|.|..
T Consensus       115 ~~e~k~~~~~~  125 (326)
T KOG0473|consen  115 KNEQKKTEFFR  125 (326)
T ss_pred             hhhhccCcchH
Confidence            99999998763

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.64  E-value=0.11  Score=26.79  Aligned_cols=11  Identities=73%  Similarity=0.905  Sum_probs=3.4

Q ss_pred             CCEEeCcCCcC
Q 041736          172 LFELDLSNNRF  182 (500)
Q Consensus       172 L~~L~Ls~n~l  182 (500)
                      |++|+|++|+|
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.38  E-value=0.0064  Score=55.45  Aligned_cols=81  Identities=20%  Similarity=0.206  Sum_probs=52.0

Q ss_pred             CcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccC
Q 041736          267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY  346 (500)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~  346 (500)
                      .+.||++.|++.. .-..|+.++.|+.||++.|.+. .+|..++.+..+..+++.+|..+ ..|.++...+.++++++-.
T Consensus        44 ~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~  120 (326)
T KOG0473|consen   44 VTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKK  120 (326)
T ss_pred             eeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhcc
Confidence            6666666666543 3345556666677777777766 56666666666666666666665 5666677777777777666


Q ss_pred             CcCc
Q 041736          347 NFFT  350 (500)
Q Consensus       347 N~l~  350 (500)
                      |.|.
T Consensus       121 ~~~~  124 (326)
T KOG0473|consen  121 TEFF  124 (326)
T ss_pred             Ccch
Confidence            6653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.11  E-value=0.035  Score=57.97  Aligned_cols=16  Identities=13%  Similarity=0.146  Sum_probs=8.3

Q ss_pred             hhCCCCCcEEEcccCC
Q 041736          309 IAEMTSLQQLNVAHNM  324 (500)
Q Consensus       309 l~~l~~L~~L~L~~N~  324 (500)
                      +..+.+|+.+.|.++.
T Consensus       358 ~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCG  373 (482)
T ss_pred             HhcCCCcchhhhhhhh
Confidence            3445555555555554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=90.78  E-value=0.032  Score=58.32  Aligned_cols=19  Identities=16%  Similarity=0.176  Sum_probs=12.3

Q ss_pred             ccccCCCccEEeccCcccC
Q 041736          284 EIGLLKNVTVFDVSYNKLM  302 (500)
Q Consensus       284 ~~~~l~~L~~L~Ls~n~l~  302 (500)
                      .+..+.+|+.+.+.++.++
T Consensus       357 ~~~~~~~l~~~~l~~~~~~  375 (482)
T KOG1947|consen  357 ILRSCPKLTDLSLSYCGIS  375 (482)
T ss_pred             HHhcCCCcchhhhhhhhcc
Confidence            3456677777777777643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.98  E-value=0.29  Score=28.28  Aligned_cols=14  Identities=43%  Similarity=0.714  Sum_probs=6.7

Q ss_pred             CCCcEEeccCCcCC
Q 041736          194 PKLKFLDLRYNEFE  207 (500)
Q Consensus       194 ~~L~~L~Ls~N~l~  207 (500)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.98  E-value=0.29  Score=28.28  Aligned_cols=14  Identities=43%  Similarity=0.714  Sum_probs=6.7

Q ss_pred             CCCcEEeccCCcCC
Q 041736          194 PKLKFLDLRYNEFE  207 (500)
Q Consensus       194 ~~L~~L~Ls~N~l~  207 (500)
                      ++|++|+|++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34445555555444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.76  E-value=0.1  Score=46.86  Aligned_cols=82  Identities=21%  Similarity=0.169  Sum_probs=56.3

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCC-cccc-CCCCCCEEeCcCC-cCCCcCchhccCCCCCcEE
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP-RSFN-KLKLLFELDLSNN-RFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L  199 (500)
                      .|+.+|-++..|.+.--+.+..++.|+.|.+.++.--+.-. +.++ -..+|+.|+|++| +|+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            58899999998877666677888888888888774332211 1122 3467999999976 4665444566777888888


Q ss_pred             eccCC
Q 041736          200 DLRYN  204 (500)
Q Consensus       200 ~Ls~N  204 (500)
                      .|.+=
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            77653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.93  E-value=0.74  Score=26.51  Aligned_cols=15  Identities=60%  Similarity=0.709  Sum_probs=9.7

Q ss_pred             CCCCCEEeCcCCcCC
Q 041736          169 LKLLFELDLSNNRFA  183 (500)
Q Consensus       169 l~~L~~L~Ls~n~l~  183 (500)
                      |++|++|+|++|+|.
T Consensus         1 L~~L~~L~L~~N~l~   15 (26)
T smart00369        1 LPNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCCEEECCCCcCC
Confidence            345666777777666

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.93  E-value=0.74  Score=26.51  Aligned_cols=15  Identities=60%  Similarity=0.709  Sum_probs=9.7

Q ss_pred             CCCCCEEeCcCCcCC
Q 041736          169 LKLLFELDLSNNRFA  183 (500)
Q Consensus       169 l~~L~~L~Ls~n~l~  183 (500)
                      |++|++|+|++|+|.
T Consensus         1 L~~L~~L~L~~N~l~   15 (26)
T smart00370        1 LPNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCCEEECCCCcCC
Confidence            345666777777666

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=84.32  E-value=2.3  Score=43.20  Aligned_cols=60  Identities=18%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             CccEEeccCcccCCCCh---hhhhCCCCCcEEEcccCCCCC----CCchhhcCCCCCcEEEccCCcC
Q 041736          290 NVTVFDVSYNKLMGELP---DTIAEMTSLQQLNVAHNMLSG----TVPDSVCSLPNLRNFSFDYNFF  349 (500)
Q Consensus       290 ~L~~L~Ls~n~l~~~~p---~~l~~l~~L~~L~L~~N~l~g----~ip~~l~~l~~L~~L~Ls~N~l  349 (500)
                      -++.+.++.|.+....-   ..+..-+.+..|++++|....    .+|..+.....++.+..+.|..
T Consensus       414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p  480 (553)
T KOG4242|consen  414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP  480 (553)
T ss_pred             cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence            36677778887763322   223445788999999997643    3444554555666666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=84.02  E-value=0.28  Score=27.72  Aligned_cols=15  Identities=27%  Similarity=0.485  Sum_probs=6.7

Q ss_pred             CCccEEeccCcccCC
Q 041736          289 KNVTVFDVSYNKLMG  303 (500)
Q Consensus       289 ~~L~~L~Ls~n~l~~  303 (500)
                      ++|++|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555543

...

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=81.62  E-value=4  Score=41.56  Aligned_cols=85  Identities=11%  Similarity=0.057  Sum_probs=49.7

Q ss_pred             cCcEEEeccCCCCCCCccc--cccCCCccEEeccCcccC-----CCChhhh----hCCCCCcEEEcccCCCCCCCc---h
Q 041736          266 TLNEVILTNNGLHSCLPEE--IGLLKNVTVFDVSYNKLM-----GELPDTI----AEMTSLQQLNVAHNMLSGTVP---D  331 (500)
Q Consensus       266 ~L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~-----~~~p~~l----~~l~~L~~L~L~~N~l~g~ip---~  331 (500)
                      .+++|+.+.|++.|..-..  +..-+.++.+++.+..-.     +..-..+    ....-+..+.++.|.+.-..-   .
T Consensus       355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in  434 (553)
T KOG4242|consen  355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN  434 (553)
T ss_pred             eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence            3788888888887654332  233456777777654331     1111111    112346677888887754332   2


Q ss_pred             hhcCCCCCcEEEccCCcCc
Q 041736          332 SVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       332 ~l~~l~~L~~L~Ls~N~l~  350 (500)
                      .+..-+.+..||+++|...
T Consensus       435 ~l~stqtl~kldisgn~mg  453 (553)
T KOG4242|consen  435 KLLSTQTLAKLDISGNGMG  453 (553)
T ss_pred             hhccCcccccccccCCCcc
Confidence            3445567899999999764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.16  E-value=0.21  Score=44.87  Aligned_cols=82  Identities=11%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC-ccccc-cCCCccEEeccCc-ccCCCChhhhhCCCCCc
Q 041736          240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL-PEEIG-LLKNVTVFDVSYN-KLMGELPDTIAEMTSLQ  316 (500)
Q Consensus       240 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~-p~~~~-~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~  316 (500)
                      ..++.++.++..|...--+.+..+.. ++.|.+.+|.--+.. -+-++ -..+|+.|+|++| +||..--..+..+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~-i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRS-IKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccch-hhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            45777787777777655566666665 777777776533210 01111 2356777777755 56544445566666666


Q ss_pred             EEEccc
Q 041736          317 QLNVAH  322 (500)
Q Consensus       317 ~L~L~~  322 (500)
                      .|.|.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	500
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-18
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		9e-08

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 7/241 (2%)
Query: 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP-RSFNKLKLLFELDLSNNR 181
           T+ G+DL+       +P   G  + +    +++N F G LP  +  K++ L  LDLS N 
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 182 FAGKFPYVVLGL-PKLKFLDLRYNEFEGKIPKALFDK---DLDAVFINNNRFSFELPDNI 237
           F+G+ P  +  L   L  LDL  N F G I   L       L  +++ NN F+ ++P  +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 238 GN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDV 296
            N S +  L L+ N   G +P S G++S+ L ++ L  N L   +P+E+  +K +    +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
            +N L GE+P  ++  T+L  +++++N L+G +P  +  L NL       N F+G  P  
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 357 L 357
           L
Sbjct: 531 L 531

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 7/241 (2%)
Query: 123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP-RSFNKLKLLFELDLSNNR 181
           T+ G+DL+       +P   G  + +    +++N F G LP  +  K++ L  LDLS N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 182 FAGKFPYVVLGL-PKLKFLDLRYNEFEGKIPKALFDK---DLDAVFINNNRFSFELPDNI 237
           F+G+ P  +  L   L  LDL  N F G I   L       L  +++ NN F+ ++P  +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 238 GN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDV 296
            N S +  L L+ N   G +P S G++S+ L ++ L  N L   +P+E+  +K +    +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
            +N L GE+P  ++  T+L  +++++N L+G +P  +  L NL       N F+G  P  
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 357 L 357
           L
Sbjct: 534 L 534

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 8/209 (3%)
Query: 124 VAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFA 183
           + GI+    ++   +P  +  L  +   ++      G +P   +++K L  LD S N  +
Sbjct: 83  IGGIN----NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 184 GKFPYVVLGLPKLKFLDLRYNEFEGKIPKAL--FDKDLDAVFINNNRFSFELPDNIGNSP 241
           G  P  +  LP L  +    N   G IP +   F K   ++ I+ NR + ++P    N  
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198
Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
           ++ + L+ N   G   + FG+   T  ++ L  N L   L  ++GL KN+   D+  N++
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNT-QKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRI 256
Query: 302 MGELPDTIAEMTSLQQLNVAHNMLSGTVP 330
            G LP  + ++  L  LNV+ N L G +P
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 214 LFDKDLDAVFINNNRFS-------FELPDNIGNSP-VSVLVLAN-NKFHGCLPLSFGNMS 264
           L D D     +NN   S       + +P ++ N P ++ L +   N   G +P +   ++
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101
Query: 265 RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNM 324
           + L+ + +T+  +   +P+ +  +K +   D SYN L G LP +I+ + +L  +    N 
Sbjct: 102 Q-LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 325 LSGTVPDSVCSLPNL-RNFSFDYNFFTGESPVC---LDLQGFDDKRNCLR 370
           +SG +PDS  S   L  + +   N  TG+ P     L+L   D  RN L 
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	500
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-45
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-26
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-21
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	5e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	9e-06
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-05
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	4e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	4e-06
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	9e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	9e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	5e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	7e-05
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	4e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	8e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-04
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	6e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	7e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	6e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  163 bits (415), Expect = 1e-46
 Identities = 68/301 (22%), Positives = 118/301 (39%), Gaps = 42/301 (13%)

Query: 80  ALQAWKKAIISDP----WNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIA 135
           AL   KK + +      W  T++   C    + GV C     +     V  +DL+  ++ 
Sbjct: 10  ALLQIKKDLGNPTTLSSWLPTTD---CCNRTWLGVLCD---TDTQTYRVNNLDLSGLNLP 63

Query: 136 ------------SYL---------------PEELGLLADIALFHVNTNRFCGTLPRSFNK 168
                        YL               P  +  L  +   ++      G +P   ++
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 169 LKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINN 226
           +K L  LD S N  +G  P  +  LP L  +    N   G IP +     K   ++ I+ 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 227 NRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIG 286
           NR + ++P    N  ++ + L+ N   G   + FG+      ++ L  N L   L  ++G
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLG-KVG 241

Query: 287 LLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY 346
           L KN+   D+  N++ G LP  + ++  L  LNV+ N L G +P    +L      ++  
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300

Query: 347 N 347
           N
Sbjct: 301 N 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  104 bits (263), Expect = 3e-25
 Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 25/186 (13%)

Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
            D  N  + G          ++  LDL                             + +P
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK---------------------PYPIP 69

Query: 235 DNIGN-SPVSVLVLAN-NKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVT 292
            ++ N   ++ L +   N   G +P +   +++ L+ + +T+  +   +P+ +  +K + 
Sbjct: 70  SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLV 128

Query: 293 VFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNF-SFDYNFFTG 351
             D SYN L G LP +I+ + +L  +    N +SG +PDS  S   L    +   N  TG
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188

Query: 352 ESPVCL 357
           + P   
Sbjct: 189 KIPPTF 194

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 127 IDLNH----GDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF 182
           +DL+     GD         G   +    H+  N     L       K L  LDL NNR 
Sbjct: 202 VDLSRNMLEGDA----SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI 256

Query: 183 AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNR 228
            G  P  +  L  L  L++ +N   G+IP+    +  D     NN+
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (429), Expect = 2e-45
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 7/237 (2%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPR-SFNKLKLLFELDLSNNRFAGK 185
           +DL+       +P   G  + +    +++N F G LP  +  K++ L  LDLS N F+G+
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 186 FPYVVLGL-PKLKFLDLRYNEFEGKIPKALFD---KDLDAVFINNNRFSFELPDNIGNSP 241
            P  +  L   L  LDL  N F G I   L       L  +++ NN F+ ++P  + N  
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 242 -VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK 300
            +  L L+ N   G +P S G++S+ L ++ L  N L   +P+E+  +K +    + +N 
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 301 LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
           L GE+P  ++  T+L  +++++N L+G +P  +  L NL       N F+G  P  L
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (416), Expect = 8e-44
 Identities = 62/213 (29%), Positives = 96/213 (45%), Gaps = 6/213 (2%)

Query: 151 FHVNTNRFCGTLPRS-FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGK 209
             +  N+F G +P         L  LDLS N F G  P        L+ L L  N F G+
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 210 IPKALFDK--DLDAVFINNNRFSFELPDNIGNSPVS--VLVLANNKFHGCLPLSFGNMSR 265
           +P     K   L  + ++ N FS ELP+++ N   S   L L++N F G +  +     +
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393

Query: 266 T-LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNM 324
             L E+ L NNG    +P  +     +    +S+N L G +P ++  ++ L+ L +  NM
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
           L G +P  +  +  L     D+N  TGE P  L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (414), Expect = 2e-43
 Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 139 PEELGLLADIALFHVNTNRFCGTLPRSFNKLKL-LFELDLSNNRFAGKFPYVV--LGLPK 195
            + L  +  + +  ++ N F G LP S   L   L  LDLS+N F+G     +       
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395

Query: 196 LKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFH 253
           L+ L L+ N F GKIP  L +  +L ++ ++ N  S  +P ++G+   +  L L  N   
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 254 GCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMT 313
           G +P     +  TL  +IL  N L   +P  +    N+    +S N+L GE+P  I  + 
Sbjct: 456 GEIPQELMYVK-TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 314 SLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDK 372
           +L  L +++N  SG +P  +    +L     + N F G  P  +  Q      N +  K
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  155 bits (394), Expect = 8e-41
 Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 10/225 (4%)

Query: 138 LPEELG-LLADIALFHVNTNRFCGTLPRSFNKLKL--LFELDLSNNRFAGKFPYVVLGLP 194
           LPE L  L A +    +++N F G +  +  +     L EL L NN F GK P  +    
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418

Query: 195 KLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPV-SVLVLANNKF 252
           +L  L L +N   G IP +L     L  + +  N    E+P  +        L+L  N  
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEM 312
            G +P    N +  LN + L+NN L   +P+ IG L+N+ +  +S N   G +P  + + 
Sbjct: 479 TGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 313 TSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
            SL  L++  N+ +GT+P ++             NF  G+  V +
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  151 bits (384), Expect = 1e-39
 Identities = 67/290 (23%), Positives = 113/290 (38%), Gaps = 28/290 (9%)

Query: 80  ALQAWKKAIISDPWNLTSNW-VGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIA--- 135
            L ++K  +     NL  +W      C + GV C     +     V  IDL+   +    
Sbjct: 16  QLISFKDVLPDK--NLLPDWSSNKNPCTFDGVTC----RDDK---VTSIDLSSKPLNVGF 66

Query: 136 SYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVV-LG-L 193
           S +   L  L  +    ++ +   G++   F     L  LDLS N  +G    +  LG  
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 194 PKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNI---GNSP-VSVLVL 247
             LKFL++  N  +     +       L+ + ++ N  S               +  L +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 248 ANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD 307
           + NK  G   +        L  + +++N   + +P  +G    +   D+S NKL G+   
Sbjct: 186 SGNKISG--DVDVSRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR 241

Query: 308 TIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
            I+  T L+ LN++ N   G +P     L +L+  S   N FTGE P  L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL 289

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (374), Expect = 3e-38
 Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 25/250 (10%)

Query: 138 LPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197
           +P  L    ++    ++ NR  G +P+   +L+ L  L LSNN F+G  P  +     L 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 198 FLDLRYNEFEGKIPKALFDKDLDA-----------------------VFINNNRFSFELP 234
           +LDL  N F G IP A+F +                              N   F     
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

Query: 235 DNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTV 293
           + +   S  +   + +  + G    +F N   ++  + ++ N L   +P+EIG +  + +
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPYLFI 660

Query: 294 FDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES 353
            ++ +N + G +PD + ++  L  L+++ N L G +P ++ +L  L       N  +G  
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720

Query: 354 PVCLDLQGFD 363
           P     + F 
Sbjct: 721 PEMGQFETFP 730

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  143 bits (362), Expect = 1e-36
 Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 10/234 (4%)

Query: 127 IDLNHGDIASYLPEEL---GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFA 183
           +DL+   I+              ++    ++ N+  G +    ++   L  LD+S+N F+
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFS 213

Query: 184 GKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPV 242
              P  +     L+ LD+  N+  G   +A+    +L  + I++N+F   +P     S +
Sbjct: 214 TGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKS-L 271

Query: 243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLM 302
             L LA NKF G +P        TL  + L+ N  +  +P   G    +    +S N   
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 303 GELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCSL-PNLRNFSFDYNFFTGESP 354
           GELP DT+ +M  L+ L+++ N  SG +P+S+ +L  +L       N F+G   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.0 bits (211), Expect = 1e-17
 Identities = 33/162 (20%), Positives = 69/162 (42%), Gaps = 4/162 (2%)

Query: 116 LDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFEL 175
           + N  ++       N  +      E+L  L+     ++ +  + G    +F+    +  L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 176 DLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELP 234
           D+S N  +G  P  +  +P L  L+L +N+  G IP  + D + L+ + +++N+    +P
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 235 DNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275
             +   + ++ + L+NN   G +P        T       NN
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIP--EMGQFETFPPAKFLNN 737

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 2e-14
 Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 8/129 (6%)

Query: 239 NSPVSVLVLANNKFHGC---LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFD 295
           +  V+ + L++   +     +  S  +++  L  + L+N+ ++  +        ++T  D
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG-LESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 296 VSYNKLMGELPD--TIAEMTSLQQLNVAHNMLSGTVPDS-VCSLPNLRNFSFDYNFFTGE 352
           +S N L G +    ++   + L+ LNV+ N L      S    L +L       N  +G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 353 SPVCLDLQG 361
           + V   L  
Sbjct: 167 NVVGWVLSD 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (299), Expect = 9e-29
 Identities = 42/202 (20%), Positives = 73/202 (36%), Gaps = 5/202 (2%)

Query: 154 NTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKA 213
           N   F G   +S      L  LDLS N          LGL +L+ LD +++  +     +
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 214 LFD--KDLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEV 270
           +F   ++L  + I++                + VL +A N F            R L  +
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 271 ILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVP 330
            L+   L    P     L ++ V ++S+N            + SLQ L+ + N +  +  
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

Query: 331 DSVCSLP-NLRNFSFDYNFFTG 351
             +   P +L   +   N F  
Sbjct: 536 QELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  116 bits (293), Expect = 5e-28
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 6/210 (2%)

Query: 150 LFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR--FAGKFPYVVLGLPKLKFLDLRYNEFE 207
           L  +      G    S   L  L  LDLS N   F G       G   LK+LDL +N   
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 208 GKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVS--VLVLANNKFHGCLPLSFGNMSR 265
                 L  + L+ +   ++        ++  S  +   L +++          F  +S 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS- 445

Query: 266 TLNEVILTNNGLHSCL-PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNM 324
           +L  + +  N       P+    L+N+T  D+S  +L    P     ++SLQ LN++HN 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
                      L +L+   +  N       
Sbjct: 506 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 535

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (264), Expect = 3e-24
 Identities = 41/232 (17%), Positives = 80/232 (34%), Gaps = 9/232 (3%)

Query: 130 NHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYV 189
           N         +       +    ++ N    T+  +F  L+ L  LD  ++       + 
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415

Query: 190 VL-GLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFS-FELPDNIGNSP-VSVL 245
           V   L  L +LD+ +                L+ + +  N F    LPD       ++ L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 246 VLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL 305
            L+  +     P +F ++S  L  + +++N   S        L ++ V D S N +M   
Sbjct: 476 DLSQCQLEQLSPTAFNSLSS-LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

Query: 306 PDTIAEM-TSLQQLNVAHNMLSGTVP--DSVCSLPNLRNFSFDYNFFTGESP 354
              +    +SL  LN+  N  + T      +  + + R    +       +P
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  100 bits (251), Expect = 1e-22
 Identities = 36/191 (18%), Positives = 61/191 (31%), Gaps = 15/191 (7%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD----KDLDAVFINNNRF 229
            LDLS N       Y     P+L+ LDL   E +     A         L    +  N  
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPI 88

Query: 230 SFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC-LPEEIGL 287
                        +  LV              G++   L E+ + +N + S  LPE    
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSN 147

Query: 288 LKNVTVFDVSYNKLMGELPDTIAEMTSLQ----QLNVAHNMLSGTVPDSVCSLPNLRNFS 343
           L N+   D+S NK+       +  +  +      L+++ N ++  +         L   +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLT 206

Query: 344 FDYNFFTGESP 354
              NF +    
Sbjct: 207 LRNNFDSLNVM 217

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.5 bits (238), Expect = 5e-21
 Identities = 34/224 (15%), Positives = 68/224 (30%), Gaps = 29/224 (12%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           + +   +   FN L  +    L +        +        + L+L   +F       L 
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQFPTLKLK 325

Query: 216 D--------------------KDLDAVFINNNRFSFE--LPDNIGNSP-VSVLVLANNKF 252
                                  L+ + ++ N  SF+     +   +  +  L L+ N  
Sbjct: 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAE 311
              +  +F  + + L  +   ++ L       +   L+N+   D+S+             
Sbjct: 386 IT-MSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 312 MTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGESP 354
           ++SL+ L +A N       PD    L NL             SP
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 2e-19
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 14/174 (8%)

Query: 194 PKLKFLDLRYNEFEGKIPKALFD----KDLDAVFINNNRFSFELPDNIGNSP-VSVLVLA 248
              K LDL +N        + F     + LD   ++             +   +S L+L 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLD---LSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 249 NNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG-ELPD 307
            N        +F  +S  L +++     L S     IG LK +   +V++N +   +LP+
Sbjct: 85  GNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 308 TIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF----DYNFFTGESPVCL 357
             + +T+L+ L+++ N +       +  L  +   +       N      P   
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 1e-18
 Identities = 32/230 (13%), Positives = 66/230 (28%), Gaps = 11/230 (4%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
           DL+   +            ++ +  ++          ++  L  L  L L+ N       
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRF-SFELPDNIGNSP-VSV 244
               GL  L+ L              +   K L  + + +N   SF+LP+   N   +  
Sbjct: 94  GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153

Query: 245 LVLANNKFHGCLPLSFG---NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
           L L++NK              M      + L+ N + + +         +    +  N  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFD 212

Query: 302 MGELP-DTIAEMTSLQQLNVAHNMLSGT---VPDSVCSLPNLRNFSFDYN 347
              +    I  +  L+   +                 +L  L N + +  
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 53/252 (21%), Positives = 92/252 (36%), Gaps = 27/252 (10%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVN----TNRFCGTLPRSFNKLKLLFELDLSNNRF 182
           +DL+   I S    +L +L  + L +++     N      P +F +++L  +L L NN  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH-KLTLRNNFD 212

Query: 183 AGKFPYVVL-GLPKLKFLDLRYNEFEGKIPKALFDKD----LDAVFINNNRFSF------ 231
           +       + GL  L+   L   EF  +     FDK     L  + I   R ++      
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 232 ELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKN 290
           ++ D       VS   L +         S+    + L    L N       P     LK+
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE---LVNCKFGQ-FPT--LKLKS 326

Query: 291 VTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS--GTVPDSVCSLPNLRNFSFDYNF 348
           +     + NK       +  ++ SL+ L+++ N LS  G    S     +L+     +N 
Sbjct: 327 LKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 349 FTGESPVCLDLQ 360
               S   L L+
Sbjct: 385 VITMSSNFLGLE 396

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 3/130 (2%)

Query: 222 VFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL 281
                  F  ++PDN+  S    L L+ N        SF +    L  + L+   + +  
Sbjct: 12  YQCMELNFY-KIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIE 68

Query: 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN 341
                 L +++   ++ N +        + ++SLQ+L      L+      +  L  L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 342 FSFDYNFFTG 351
            +  +N    
Sbjct: 129 LNVAHNLIQS 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 269 EVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328
                    +  +P+   L  +    D+S+N L      +      LQ L+++   +   
Sbjct: 11  TYQCMELNFYK-IPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 329 VPDSVCSLPNLRNFSFDYNFFTGESP 354
              +  SL +L       N     + 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLAL 93

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  115 bits (291), Expect = 1e-27
 Identities = 44/323 (13%), Positives = 96/323 (29%), Gaps = 53/323 (16%)

Query: 78  YIALQAWKKAIISDPW-------NLTSNW----VGCYVCNYTGVFCAQALDNHSIRTVAG 126
           Y+AL+    A+    W          +NW             GV        +S   V G
Sbjct: 32  YLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSL------NSNGRVTG 85

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCG----TLPRSFNKLKLLFELDLSNNRF 182
           + L     +  +P+ +G L ++ +  + ++          P+  +      +       +
Sbjct: 86  LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145

Query: 183 AGKFPYVV--LGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNS 240
              F           L    +  +  +  I K+      D      +     +   +   
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRL 205

Query: 241 P-VSVLVLANNKF-------------------HGCLPLSFGNMSRTLNEVILTNNGLHSC 280
             +    + N+ F                   +    L + N+   L +V + N    + 
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD-LTDVEVYNCPNLTK 264

Query: 281 LPEEIGLLKNVTVFDVSYNKLM--------GELPDTIAEMTSLQQLNVAHNML-SGTVPD 331
           LP  +  L  + + +V+ N+ +         +          +Q + + +N L +  V  
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 332 SVCSLPNLRNFSFDYNFFTGESP 354
           S+  +  L      YN   G+ P
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (277), Expect = 7e-26
 Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 27/235 (11%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
             + +    +    E     +         +   T    ++ LK L ++++ N     K 
Sbjct: 211 FYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP-VSVL 245
           P  +  LP+++ +++  N                       +  ++   +      + ++
Sbjct: 266 PTFLKALPEMQLINVACNRGIS---------------GEQLKDDWQALADAPVGEKIQII 310

Query: 246 VLANNKF-HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE 304
            +  N      +  S   M + L  +    N L        G    +   +++YN++   
Sbjct: 311 YIGYNNLKTFPVETSLQKMKK-LGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEI 368

Query: 305 LPDTIAEMTSLQQLNVAHNMLSGTVPD--SVCSLPNLRNFSFDYNFFTGESPVCL 357
             +       ++ L+ AHN L   +P+     S+  +    F YN          
Sbjct: 369 PANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (276), Expect = 7e-26
 Identities = 45/242 (18%), Positives = 88/242 (36%), Gaps = 32/242 (13%)

Query: 138 LPEELGLLADIALFHVNTNRF--------CGTLPRSFNKLKLLFELDLSNNRFA-GKFPY 188
           LP  L  L ++ L +V  NR                    + +  + +  N         
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 189 VVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVS--VL 245
            +  + KL  L+  YN+ EGK+P A      L ++ +  N+ + E+P N          L
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382

Query: 246 VLANNKFHGCLP--LSFGNMSRTLNEVILTNNGLHSC-------LPEEIGLLKNVTVFDV 296
             A+NK    +P      ++S  ++ +  + N + S        L        NV+  ++
Sbjct: 383 SFAHNKLKY-IPNIFDAKSVSV-MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440

Query: 297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSG-------TVPDSVCSLPNLRNFSFDYNFF 349
           S N++     +  +  + L  +N+  NML+           ++  +   L +    +N  
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500

Query: 350 TG 351
           T 
Sbjct: 501 TK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (269), Expect = 7e-25
 Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 34/246 (13%)

Query: 136 SYLPEEL-GLLADIALFHVNTNRFCGTLPRSFN--KLKLLFELDLSNNRFAG-------K 185
           + +P    G    +       N+    +P  F+   + ++  +D S N            
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 186 FPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFS-------FELPDNI 237
                     +  ++L  N+      +       L ++ +  N  +        +  +N 
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 238 GNSP-VSVLVLANNKFHGCLP--LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF 294
            N+  ++ + L  NK    L        +   L  + L+ N      P +      +  F
Sbjct: 485 KNTYLLTSIDLRFNKLTK-LSDDFRATTLPY-LVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 295 ------DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348
                 D   N+ + E P+ I    SL QL +  N +   V + +   PN+       N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNP 598

Query: 349 FTGESP 354
                 
Sbjct: 599 NISIDL 604

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  104 bits (261), Expect = 6e-24
 Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 23/205 (11%)

Query: 160 GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--- 216
             L  +  K   +  ++LSNN+ +     +      L  ++L  N     IPK       
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDEN 481

Query: 217 ------KDLDAVFINNNRFSFELPDNIGNSPVS---VLVLANNKFHGCLPLSFGNMSR-- 265
                   L ++ +  N+ + +L D+   + +     + L+ N F    P    N S   
Sbjct: 482 ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK 539

Query: 266 ---TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322
                N+     N      PE I L  ++T   +  N +  ++ + I    ++  L++  
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI--TPNISVLDIKD 596

Query: 323 NMLSGTVPDSVCSLPNLRNFSFDYN 347
           N         VC       +   Y+
Sbjct: 597 NPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 25/201 (12%), Positives = 60/201 (29%), Gaps = 15/201 (7%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEG----KIPKAL-FDKDL 219
           S N    +  L L     +G+ P  +  L +L+ L L  +  +       PK +  +   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 220 DAVFINNNRFSFELPDNIGN---SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNG 276
           +        +     D       S +    + ++     +  S     +   ++   +N 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK-DTQIGQLSNN 194

Query: 277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL 336
           +   + + +  L  +  F +  +  + E      E  + +           T      +L
Sbjct: 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ-----QYKTEDLKWDNL 248

Query: 337 PNLRNFSFDYNFFTGESPVCL 357
            +L +          + P  L
Sbjct: 249 KDLTDVEVYNCPNLTKLPTFL 269

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  111 bits (280), Expect = 3e-26
 Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 10/237 (4%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +D+    I+   PE    L  + + ++  N       ++F     L EL L +N      
Sbjct: 54  LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK 113

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFS---FELPDNIGNSPV 242
               +    L  LDL +N             ++L  + ++NN+      E  D   NS +
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL---LKNVTVFDVSYN 299
             L L++N+     P  F  + R L  + L N  L   L E++ L     ++    +S +
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 300 KLMGELPDTIAEM--TSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
           +L      T   +  T+L  L++++N L+    DS   LP L  F  +YN       
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (278), Expect = 6e-26
 Identities = 45/235 (19%), Positives = 95/235 (40%), Gaps = 11/235 (4%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
            D +H  +   +P+   L  +I + ++  N+       +F +   L  LD+  N  +   
Sbjct: 9   ADCSHLKLTQ-VPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSP-VSV 244
           P +   LP LK L+L++NE      K      +L  + + +N       +       +  
Sbjct: 66  PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125

Query: 245 LVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNV--TVFDVSYNKLM 302
           L L++N        +   +   L E++L+NN + +   EE+ +  N      ++S N++ 
Sbjct: 126 LDLSHNGLSSTKLGTQVQLEN-LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184

Query: 303 GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC---SLPNLRNFSFDYNFFTGESP 354
              P     +  L  L + +  L  ++ + +C   +  ++RN S   +  +  S 
Sbjct: 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  109 bits (275), Expect = 1e-25
 Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 14/212 (6%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL-GLPKLKFLDLRYNEFEGKIPKAL 214
           N+       +F+ L  L  LDL  N    +       GL  +  + L YN++      + 
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 215 FD-KDLDAVFINNNRFSF--ELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEV 270
                L  + +           P        +++L L+NN            + + L  +
Sbjct: 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK-LEIL 509

Query: 271 ILTNNGLHSC--------LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH 322
            L +N L               +  L ++ + ++  N       +   ++  L+ +++  
Sbjct: 510 DLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

Query: 323 NMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
           N L+        +  +L++ +   N  T    
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (266), Expect = 2e-24
 Identities = 45/261 (17%), Positives = 88/261 (33%), Gaps = 18/261 (6%)

Query: 116 LDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRS-FNKLKLLFE 174
           L +  +     ++L    I+    +    L  + +  +  N     L    +  L+ +FE
Sbjct: 378 LAHSPLHI---LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEG--KIPKALFD-KDLDAVFINNNRFSF 231
           + LS N++          +P L+ L LR    +     P      ++L  + ++NN  + 
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494

Query: 232 ELPDNIGNSP-VSVLVLANNK--------FHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282
              D +     + +L L +N           G        +S  L+ + L +NG      
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH-LHILNLESNGFDEIPV 553

Query: 283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC-SLPNLRN 341
           E    L  + + D+  N L            SL+ LN+  N+++         +  NL  
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE 613

Query: 342 FSFDYNFFTGESPVCLDLQGF 362
               +N F            +
Sbjct: 614 LDMRFNPFDCTCESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 9e-22
 Identities = 35/242 (14%), Positives = 84/242 (34%), Gaps = 17/242 (7%)

Query: 127 IDLNHGDIASYLPEELGLLADIAL--FHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG 184
           + L++  +++        L    L    ++ N        SF  L  L    L  N    
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 185 KFPYVVLGLPKLKFL---------DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELP 234
            F + + GL  +++L          +           +    K L+ + + +N       
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 235 DNIGNSP-VSVLVLANN--KFHGCLPLSFGNMSRT-LNEVILTNNGLHSCLPEEIGLLKN 290
           +       +  L L+N+          +F +++ + L+ + LT N +     +    L +
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 291 VTVFDVSYNKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFF 349
           + V D+  N++  EL       + ++ ++ +++N       +S   +P+L+         
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 350 TG 351
             
Sbjct: 467 KN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 1e-21
 Identities = 40/265 (15%), Positives = 89/265 (33%), Gaps = 30/265 (11%)

Query: 127 IDLNHGDIASYLPEELGLLADIAL--FHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG 184
           + L++  I +   EEL + A+ +L    +++N+     P  F+ +  LF L L+N +   
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 185 KFP---YVVLGLPKLKFLDLRYNEFEGKIPKA---LFDKDLDAVFINNNRFSFELPDNIG 238
                  + L    ++ L L  ++           L   +L  + ++ N  +    D+  
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269

Query: 239 NSP-VSVLVLANNKFHGCLPLSFGNM--------SRTLNEVILTNNGLHSCLPEEIGLLK 289
             P +    L  N        S   +         R+  +  ++   L          LK
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329

Query: 290 NVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV----CSLPNLRNFSFD 345
            +   ++  N + G   +    + +L+ L+++++  S     +      +   L   +  
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT 389

Query: 346 YNFFTGESP---------VCLDLQG 361
            N  +               LDL  
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGL 414

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.5 bits (207), Expect = 4e-17
 Identities = 26/160 (16%), Positives = 55/160 (34%), Gaps = 4/160 (2%)

Query: 196 LKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHG 254
            +  D  + +   ++P  L   ++  + + +N+       N      ++ L +  N    
Sbjct: 6   HEVADCSHLKLT-QVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 255 CLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTS 314
             P     +   L  + L +N L     +      N+T   +  N +     +   +  +
Sbjct: 64  LEPELCQKLPM-LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 315 LQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
           L  L+++HN LS T   +   L NL+      N       
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  106 bits (265), Expect = 3e-24
 Identities = 38/242 (15%), Positives = 76/242 (31%), Gaps = 21/242 (8%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-- 184
            + ++             L D+    +        LP     L  L  L+++ NR     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 185 -------KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSFELPD 235
                  +        PK++   + YN  E     A   K   L  +   +N+    L  
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA 590

Query: 236 NIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL--LKNVTV 293
              N  ++ L L  N+    +P  F   +  +  +  ++N L   +P       +  +  
Sbjct: 591 FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648

Query: 294 FDVSYNKLMGELPDTIAEM-----TSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348
            D SYNK+  E  +    M      +   + +++N +     +   +   +       N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 349 FT 350
            T
Sbjct: 709 MT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (264), Expect = 4e-24
 Identities = 41/234 (17%), Positives = 81/234 (34%), Gaps = 31/234 (13%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           I   +    +Y    +         + +  +       S++ LK L +++L N     + 
Sbjct: 453 IYFANSPF-TYDNIAVDWE----DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP-VSVL 245
           P  +  LP+L+ L++  N                            L D+    P + + 
Sbjct: 508 PDFLYDLPELQSLNIACNRGIS--------------AAQLKADWTRLADDEDTGPKIQIF 553

Query: 246 VLANNKFHGCLP--LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303
            +  N      P   S   M + L  +   +N +     E  G    +T   + YN++  
Sbjct: 554 YMGYNNLEE-FPASASLQKMVK-LGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIE- 608

Query: 304 ELPDTI-AEMTSLQQLNVAHNMLSGTVPD--SVCSLPNLRNFSFDYNFFTGESP 354
           E+P+   A    ++ L  +HN L   +P+  +  S+  + +  F YN    E  
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (262), Expect = 6e-24
 Identities = 49/302 (16%), Positives = 96/302 (31%), Gaps = 38/302 (12%)

Query: 78  YIALQAWKKAIISDPWNLTSNWVGCY-----------VCNYTGVFCAQALDNHSIRTVAG 126
           Y AL+A  +A+    W   S  +              +  +         +N  +     
Sbjct: 271 YKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTG--- 327

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           + L        +P+ +G L ++ +    T+    +     ++       +   +R    +
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 187 PYVVLG-LPKLKFLDLRYNEF----EGKIPKALFDKDLDAVFINN--NRFSFELPDNIGN 239
             + L    +L   DL  +      E K  K      L    I N  NR +F +   I  
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQR 446

Query: 240 -SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSY 298
            + + ++  AN+ F                +        +         LK++T  ++  
Sbjct: 447 LTKLQIIYFANSPFTYDNIAVD------WEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 299 NKLMGELPDTIAEMTSLQQLNVAHNMLSG---------TVPDSVCSLPNLRNFSFDYNFF 349
              M +LPD + ++  LQ LN+A N              + D   + P ++ F   YN  
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 350 TG 351
             
Sbjct: 561 EE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.4 bits (245), Expect = 8e-22
 Identities = 39/238 (16%), Positives = 74/238 (31%), Gaps = 30/238 (12%)

Query: 139 PEELGLLADIALFHVNTNRFCGTLPRS-FNKLKLLFELDLSNNRFAGKFPYVVL--GLPK 195
            E  G    +    ++ N+    +P         +  L  S+N+     P +     +  
Sbjct: 588 LEAFGTNVKLTDLKLDYNQI-EEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYV 645

Query: 196 LKFLDLRYNEFEGKIPKALFDKD------LDAVFINNNRFSFELPDNIGNSP-VSVLVLA 248
           +  +D  YN+   +        D         V ++ N       +       +S ++L+
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 249 NNKF-------HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL--LKNVTVFDVSYN 299
           NN               ++ N    L  + L  N L S L ++     L  ++  DVSYN
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYL-LTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYN 763

Query: 300 KLMGELPDTIAEMTSLQQLNVAH------NMLSGTVPDSVCSLPNLRNFSFDYNFFTG 351
                 P      + L+   + H      N +    P  + + P+L       N    
Sbjct: 764 CF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK 820

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 37/238 (15%), Positives = 78/238 (32%), Gaps = 25/238 (10%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
            +N       + ++  +          TNR    + ++  +L  L  +  +N+ F     
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSP-VSVL 245
            V       +  +  Y +       +  + KDL  V + N     +LPD + + P +  L
Sbjct: 466 AV-----DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 246 VLANNKFHG---------CLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL--LKNVTVF 294
            +A N+             L        + +    +  N L    P    L  +  + + 
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYMGYNNLEE-FPASASLQKMVKLGLL 578

Query: 295 DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS-LPNLRNFSFDYNFFTG 351
           D  +NK+     +       L  L + +N +   +P+  C+    +    F +N    
Sbjct: 579 DCVHNKV--RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY 633

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.6 bits (235), Expect = 1e-20
 Identities = 34/246 (13%), Positives = 72/246 (29%), Gaps = 33/246 (13%)

Query: 127 IDLNHGDIASYLPEELGL--LADIALFHVNTNRFCGTLPRSFNKLKL-----LFELDLSN 179
           +  +H  +  Y+P       +  +     + N+           +          + LS 
Sbjct: 624 LGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN----------NNRF 229
           N        +      +  + L  N     IP+    K  D  + N           N+ 
Sbjct: 683 NEIQKFPTELFATGSPISTIILSNNLMT-SIPENSL-KPKDGNYKNTYLLTTIDLRFNKL 740

Query: 230 SFELPDNIGNSPVS---VLVLANNKFHGCLPLSFGNMS--RTLN---EVILTNNGLHSCL 281
           +  L D+   + +     + ++ N F    P    N S  +      +     N +    
Sbjct: 741 T-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

Query: 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN 341
           P  I    ++    +  N +  ++ + +     L  L++A N        SVC       
Sbjct: 799 PTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 342 FSFDYN 347
           +   Y+
Sbjct: 856 YVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 30/222 (13%), Positives = 64/222 (28%), Gaps = 28/222 (12%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNT-----NRFCGTLPRSFNKLKLLFELDLSNNR 181
           +D ++  I S        + D    + +T     N         F     +  + LSNN 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 182 F-------AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD---KDLDAVFINNNRFSF 231
                                L  +DLR+N+    +           L  + ++ N FS 
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS- 766

Query: 232 ELPDNIGNSP-------VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
             P    NS                N+     P         L ++ + +N +   + E+
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS-LIQLQIGSNDI-RKVDEK 824

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
           +     + + D++ N  +     ++          + ++   
Sbjct: 825 L--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.4 bits (206), Expect = 5e-17
 Identities = 22/212 (10%), Positives = 56/212 (26%), Gaps = 19/212 (8%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           + +        +    +  L L+     G+ P  +  L +LK L    +       +   
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFG 367

Query: 216 DKDLDAVFINN--NRFSFELPDNIGNSPVSV--------LVLANNKFHGCLPLSFGNMSR 265
           D++L         +R          +    +         +  N +       S  ++  
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK- 426

Query: 266 TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML 325
              ++    N +   + + I  L  + +   + +                +  N  +   
Sbjct: 427 -DTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQ 479

Query: 326 SGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
                 S  +L +L +          + P  L
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 18/142 (12%)

Query: 136 SYLPEELGL--LADIALFHVNTNRFCGTLPRSFNKLK------LLFELDLSNNRFAGKFP 187
           + L ++     L  ++   V+ N F  + P             +  + D   NR   ++P
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDK----DLDAVFINNNRFSFELPDNIGNSPVS 243
             +   P L  L +  N+   K+ + L  +    D+     +N   S ++          
Sbjct: 800 TGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIA----DNPNISIDVTSVCPYIEAG 854

Query: 244 VLVLANNKFHGCLPLSFGNMSR 265
           + VL  +K           + R
Sbjct: 855 MYVLLYDKTQDIRGCDALGIER 876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 19/116 (16%), Positives = 40/116 (34%)

Query: 294 FDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES 353
           F+   +    +    +     +  L++A     G VPD++  L  L+  SF  +  T   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 354 PVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTLKCQSSPQPPVYSLPP 409
            +  D +   D     + + R         +  RL   + L+   +  P +  +  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.6 bits (249), Expect = 3e-23
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
           +L    +    P++   L+ +    ++       LP +  +   L  L L+ N      P
Sbjct: 87  ELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVF----------INNNRFSFELPDNI 237
             +  L +L+ L +R      ++P+ L   D               +        LP +I
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 238 GN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDV 296
            N   +  L + N+     L  +  ++ + L E+ L         P   G    +    +
Sbjct: 203 ANLQNLKSLKIRNSPLSA-LGPAIHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348
                +  LP  I  +T L++L++   +    +P  +  LP         + 
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.1 bits (201), Expect = 4e-17
 Identities = 27/203 (13%), Positives = 63/203 (31%), Gaps = 20/203 (9%)

Query: 160 GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDL 219
           G+     +       L    +     +  V+    +    D        +      +  +
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN-SNNPQI 60

Query: 220 DAVFINNNRFSFELPDNIGNSPVS---VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNG 276
           +       +      D + ++       L L +       P     +S  L  + +   G
Sbjct: 61  ETRTGRALK---ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAG 115

Query: 277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS- 335
           L   LP+ +     +    ++ N L   LP +IA +  L++L++        +P+ + S 
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 336 --------LPNLRNFSFDYNFFT 350
                   L NL++   ++    
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR 196

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 36/194 (18%), Positives = 60/194 (30%), Gaps = 22/194 (11%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKL---------LFELDLS 178
            L    + + LP  +  L  +    +        LP                 L  L L 
Sbjct: 133 TLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 179 NNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD----KDLDAVFINNNRFSFELP 234
                   P  +  L  LK L +R +     +  A+      ++LD             P
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD--LRGCTALR-NYP 246

Query: 235 DNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTV 293
              G  +P+  L+L +      LPL    +++ L ++ L      S LP  I  L    +
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 294 FDVSYNKLMGELPD 307
             V  + L  +L  
Sbjct: 306 ILVPPH-LQAQLDQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (251), Expect = 1e-22
 Identities = 36/237 (15%), Positives = 76/237 (32%), Gaps = 11/237 (4%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           I+L      +         + +    +        LP     L  L +L LS N+F    
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSF--ELPDNIGNSP- 241
                  P L  L ++ N    ++     +  ++L  + ++++           + N   
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNK 300
           +  L L+ N+       +F    + L  + L    L     +     L  + V ++S++ 
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 301 LMGELPDTIAEMTSLQQLNVAHNMLSGTV---PDSVCSLPNLRNFSFDYNFFTGESP 354
           L          + +LQ LN+  N          +S+ +L  L      +   +    
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.9 bits (247), Expect = 4e-22
 Identities = 51/254 (20%), Positives = 101/254 (39%), Gaps = 12/254 (4%)

Query: 114 QALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIAL--FHVNTNRFCGTLPRSFNKLKL 171
           + L N +I+++        D     P     L ++++   ++  + F      +F+    
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279

Query: 172 LFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRF 229
           L ELDL+    + + P  ++GL  LK L L  N+FE  + +        L  + I  N  
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTK 337

Query: 230 SFELPDNI--GNSPVSVLVLANNKFH--GCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI 285
             EL          +  L L+++      C  L   N+S  L  + L+ N   S   E  
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTEAF 396

Query: 286 GLLKNVTVFDVSYNKLMGELPDTI-AEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
                + + D+++ +L  +   +    +  L+ LN++H++L  +       LP L++ + 
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 345 DYNFFTGESPVCLD 358
             N F   +    +
Sbjct: 457 QGNHFPKGNIQKTN 470

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 45/235 (19%), Positives = 81/235 (34%), Gaps = 13/235 (5%)

Query: 127 IDLNHGDIASYLPEE----LGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF 182
           + +        L       L  L ++ L H +              L  L  L+LS N  
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 183 AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNS 240
                      P+L+ LDL +   + K  ++ F     L  + ++++             
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 241 P-VSVLVLANNKFHGCLPL---SFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDV 296
           P +  L L  N F         S   + R L  ++L+   L S        LK +   D+
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGR-LEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507

Query: 297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG 351
           S+N+L     + ++ +  +  LN+A N +S  +P  +  L   R  +   N    
Sbjct: 508 SHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 1e-17
 Identities = 30/239 (12%), Positives = 68/239 (28%), Gaps = 8/239 (3%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           ++ +   + +        L ++    +   +       +F     L  L L+ N      
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSP-VSV 244
              + G   LK L              L + K L+++++ +N  S         +  + V
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 245 LVLANNKFHGCLPLSFGNMSR-TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303
           L   NN  H        ++ + T   + L  N + + +             +    + + 
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLL 216

Query: 304 ELPDTIA--EMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFD--YNFFTGESPVCLD 358
            +   +    + SL              P     L  +   S +   ++F   S     
Sbjct: 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH 275

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 31/188 (16%), Positives = 49/188 (26%), Gaps = 25/188 (13%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFEL 233
            L+ S N            L  L FLDL   +    I +  F                  
Sbjct: 37  CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQ----------------- 78

Query: 234 PDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTV 293
                   +  LVL  N        +       L  +     G+ S     +   K +  
Sbjct: 79  ----SQHRLDTLVLTANPLIFMAETALSGPKA-LKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 294 FDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFD--YNFFTG 351
             +  N +             L+ L+  +N +     + + SL    N S +   N   G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193

Query: 352 ESPVCLDL 359
             P   D 
Sbjct: 194 IEPGAFDS 201

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.6 bits (189), Expect = 5e-15
 Identities = 41/194 (21%), Positives = 75/194 (38%), Gaps = 15/194 (7%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL-GLPKLKFLDLRYNEFEGKIPKAL 214
           N        +F +   L  LDL+  R   K        L  LK L+L ++  +    + L
Sbjct: 386 NEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI-SSEQL 444

Query: 215 FD--KDLDAVFINNNRFSFELPDNIGN----SPVSVLVLANNKFHGCLPLSFGNMSRTLN 268
           FD    L  + +  N F         +      + +LVL+          +F ++   +N
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MN 503

Query: 269 EVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328
            V L++N L S   E +  LK + + +++ N +   LP  +  ++  + +N+  N L  T
Sbjct: 504 HVDLSHNRLTSSSIEALSHLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

Query: 329 VPDSVCSLPNLRNF 342
                CS      +
Sbjct: 563 -----CSNIYFLEW 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 71.6 bits (176), Expect = 2e-13
 Identities = 23/159 (14%), Positives = 46/159 (28%), Gaps = 4/159 (2%)

Query: 197 KFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGC 255
           K  +        +IP  L     + +  + N               ++ L L   + +  
Sbjct: 15  KTYNCENLGLN-EIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 256 LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSL 315
              +F +  R L+ ++LT N L       +   K +         +       +    +L
Sbjct: 73  HEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 316 QQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP 354
           + L +  N +S            L+   F  N     S 
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 16/97 (16%), Positives = 33/97 (34%)

Query: 261 GNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNV 320
           G +  +   +  + N L +        L N+T  D++  ++     DT      L  L +
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 321 AHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
             N L      ++     L++  F     +    + L
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 6/200 (3%)

Query: 156 NRFCGTLPRSFNKLKL--LFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKA 213
           N    +   S++ L    L  LDLS N          +GL +L+ LD +++  +     +
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 214 LFD--KDLDAVFINNNRFSFELPDNIGNSPV-SVLVLANNKFHGCLPLSFGNMSRTLNEV 270
            F   + L  + I+      +           + L +A N F      +    +  L  +
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 271 ILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVP 330
            L+   L          L  + + ++S+N L+        ++ SL  L+ + N +  +  
Sbjct: 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 331 DSVCSLPNLRNFSFDYNFFT 350
                  +L  F+   N   
Sbjct: 539 ILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 9e-21
 Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 6/205 (2%)

Query: 160 GTLPRSFNKLKLLFELDLSNNRFAGKFPYVV--LGLPKLKFLDLRYNEFEGKIPKALFDK 217
           G++      L  L  LDLS N  +         LG   L+ LDL +N         +  +
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399

Query: 218 DLDAVFINNNRFSFELPDNIGNSPVS--VLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275
           +L  +   ++        +   S      L ++           F  ++  LN + +  N
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGN 458

Query: 276 GLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334
                    +     N+T  D+S  +L          +  LQ LN++HN L         
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 335 SLPNLRNFSFDYNFFTGESPVCLDL 359
            L +L      +N       +    
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHF 543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 91.2 bits (227), Expect = 1e-19
 Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 14/198 (7%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD------KD 218
               L  L  L L+ N+  G   +  + LP L +LDL  N        +  D      + 
Sbjct: 323 PTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 219 LDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277
           LD   ++ N     +  N      +  L   ++        S       L  + ++    
Sbjct: 381 LD---LSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 278 HSCLPEEIGLLKNVTVFDVSYNKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCSL 336
                     L ++    ++ N        +  A  T+L  L+++   L         +L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 337 PNLRNFSFDYNFFTGESP 354
             L+  +  +N       
Sbjct: 497 HRLQLLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.8 bits (205), Expect = 5e-17
 Identities = 44/207 (21%), Positives = 70/207 (33%), Gaps = 10/207 (4%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           N        SF+    L  LDLS             GL  L  L L  N  +   P +  
Sbjct: 42  NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101

Query: 216 D-KDLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGC-LPLSFGNMSRTLNEVIL 272
               L+ +     + +      IG    +  L +A+N  H C LP  F N++  L  V L
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN-LVHVDL 160

Query: 273 TNNGLHSCLPEEIGLLKNVTVF----DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328
           + N + +    ++  L+         D+S N +   + D   +   L +L +  N  S  
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSN 219

Query: 329 VPDSVCS-LPNLRNFSFDYNFFTGESP 354
           +  +    L  L         F  E  
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERN 246

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 9/188 (4%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFE 232
            +DLS N       Y      +L++LDL   E E    KA      L  + +  N     
Sbjct: 36  NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95

Query: 233 LPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC-LPEEIGLLKN 290
            P +      +  LV    K         G +   L ++ + +N +HSC LP     L N
Sbjct: 96  SPGSFSGLTSLENLVAVETKLASLESFPIGQLIT-LKKLNVAHNFIHSCKLPAYFSNLTN 154

Query: 291 VTVFDVSYNKLMGELPDTIAEMT----SLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY 346
           +   D+SYN +     + +  +         L+++ N +   + D       L   +   
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRG 213

Query: 347 NFFTGESP 354
           NF +    
Sbjct: 214 NFNSSNIM 221

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 29/193 (15%), Positives = 66/193 (34%), Gaps = 13/193 (6%)

Query: 175 LDLSNNRFAGKFPYVVLGLPK-LKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFE 232
               + + +     V   +P   K +DL +N  +     +  +  +L  + ++       
Sbjct: 16  YQCMDQKLS----KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 233 LPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNV 291
                     +S L+L  N      P SF  ++  L  ++     L S     IG L  +
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS-LENLVAVETKLASLESFPIGQLITL 130

Query: 292 TVFDVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF----DY 346
              +V++N +   +LP   + +T+L  +++++N +     + +  L      +       
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 347 NFFTGESPVCLDL 359
           N            
Sbjct: 191 NPIDFIQDQAFQG 203

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 44/266 (16%), Positives = 84/266 (31%), Gaps = 22/266 (8%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +DL+  +I +   +    L  ++   +  N      P SF+ L  L  L     + A   
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNI----GNS 240
            + +  L  LK L++ +N        A F    +L  V ++ N     +  N       +
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLREN 179

Query: 241 PVS--VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL-LKNVTVFDVS 297
           P     L ++ N        +F  +   L+E+ L  N   S + +     L  + V  + 
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 298 YNKLMGEL------PDTIAEMTSLQ--QLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFF 349
             +   E       P  +  +  +   +  + +             L N+   S      
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 350 TG--ESPVCLDLQGFDDKRNCLRDKP 373
               + P     Q     R  L+  P
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLKQFP 323

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 9e-21
 Identities = 39/224 (17%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
            +    +   L        ++    ++ N               L  L+LS+N       
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVL 247
             +  L  L+ LDL  N  + ++      + L      NN  S  +  + G      + L
Sbjct: 76  --LESLSTLRTLDLNNNYVQ-ELLVGPSIETLH---AANNNIS-RVSCSRGQG-KKNIYL 127

Query: 248 ANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS-CLPEEIGLLKNVTVFDVSYNKLMGELP 306
           ANNK      L  G  SR +  + L  N + +    E       +   ++ YN +  ++ 
Sbjct: 128 ANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 307 DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
             +     L+ L+++ N L+  +     S   +   S   N   
Sbjct: 186 GQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 33/187 (17%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV-- 222
           S ++ +    + L+NN+             ++++LDL+ NE +  +  A      D +  
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEH 173

Query: 223 -FINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL 281
             +  N    ++   +  + +  L L++NK                           + +
Sbjct: 174 LNLQYNFIY-DVKGQVVFAKLKTLDLSSNKL--------------------------AFM 206

Query: 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS-GTVPDSVCSLPNLR 340
             E      VT   +  NKL+  +   +    +L+  ++  N    GT+ D       ++
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 341 NFSFDYN 347
             +    
Sbjct: 266 TVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 256 LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSL 315
           +     N +R      +T++ L   L        NV   D+S N L       +A  T L
Sbjct: 2   IHEIKQNGNR-YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 316 QQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           + LN++ N+L     D + SL  LR    + N+  
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 1/109 (0%)

Query: 161 TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLD 220
            +   F     +  + L NN+        +     L+  DLR N F     +  F K+  
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNE 269
              +           N     V  L          LP  F +    L  
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGH 312

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 92.6 bits (230), Expect = 3e-20
 Identities = 39/224 (17%), Positives = 74/224 (33%), Gaps = 13/224 (5%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
            +    +   L        ++    ++ N               L  L+LS+N       
Sbjct: 16  KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD 75

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVL 247
             +  L  L+ LDL  N  + ++      + L      NN  S  +  + G      + L
Sbjct: 76  --LESLSTLRTLDLNNNYVQ-ELLVGPSIETLH---AANNNIS-RVSCSRGQG-KKNIYL 127

Query: 248 ANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS-CLPEEIGLLKNVTVFDVSYNKLMGELP 306
           ANNK      L  G  SR +  + L  N + +    E       +   ++ YN +  ++ 
Sbjct: 128 ANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK 185

Query: 307 DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
             +     L+ L+++ N L+  +     S   +   S   N   
Sbjct: 186 GQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.8 bits (163), Expect = 5e-12
 Identities = 26/191 (13%), Positives = 44/191 (23%), Gaps = 5/191 (2%)

Query: 161 TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLD 220
            +   F     +  + L NN+        +     L+  DLR N F     +  F K+  
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSF----GNMSRTLNEVILTNNG 276
              +           N     V  L          LP  F      + R  + ++     
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 277 LHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL 336
               L  E          D    +    +        +   L      L   V +   + 
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

Query: 337 PNLRNFSFDYN 347
             L        
Sbjct: 384 AELDGTLQQAV 394

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 256 LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSL 315
           +     N +R      +T++ L   L        NV   D+S N L       +A  T L
Sbjct: 2   IHEIKQNGNR-YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 316 QQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           + LN++ N+L     D + SL  LR    + N+  
Sbjct: 61  ELLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 10/74 (13%), Positives = 23/74 (31%)

Query: 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLR 340
           + E         +  V+ + L   L        ++++L+++ N LS      +     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 341 NFSFDYNFFTGESP 354
             +   N       
Sbjct: 62  LLNLSSNVLYETLD 75

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 1e-18
 Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 41/230 (17%)

Query: 136 SYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKL--------------LFELDLSNNR 181
           + LP     L ++++F          LP    KL +              L EL +S+N+
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHL-PALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ 152

Query: 182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNS 240
            A   P       +L  L    N+    +P      ++L    +++N+ +  LP      
Sbjct: 153 LA-SLPA---LPSELCKLWAYNNQLT-SLPMLPSGLQELS---VSDNQLA-SLPTLPSE- 202

Query: 241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK 300
            +  L   NN+    LP         L E+I++ N L S LP     LK      VS N+
Sbjct: 203 -LYKLWAYNNRLT-SLPALPSG----LKELIVSGNRLTS-LPVLPSELKE---LMVSGNR 252

Query: 301 LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           L   LP      + L  L+V  N L+  +P+S+  L +    + + N  +
Sbjct: 253 LT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 8e-18
 Identities = 53/254 (20%), Positives = 91/254 (35%), Gaps = 34/254 (13%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +++    + + LP+ L   A I    +  N    +LP    +L+    L++S N+     
Sbjct: 45  LNVGESGLTT-LPDCLP--AHITTLVIPDNNL-TSLPALPPELR---TLEVSGNQLT-SL 96

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLV 246
           P +  GL +L             +P  L    L    I  N+ +  LP       +  L 
Sbjct: 97  PVLPPGLLELSIFSNPLTHLP-ALPSGL--CKLW---IFGNQLT-SLPVLPPG--LQELS 147

Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP 306
           +++N+    LP         L ++   NN L + LP        +    VS N+L   LP
Sbjct: 148 VSDNQL-ASLPALPSE----LCKLWAYNNQL-TSLPMLPS---GLQELSVSDNQLA-SLP 197

Query: 307 DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKR 366
                 + L +L   +N L+ ++P        L+      N  T    +  +L+      
Sbjct: 198 TLP---SELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSG 250

Query: 367 NCLRDKPRQRSTLQ 380
           N L   P   S L 
Sbjct: 251 NRLTSLPMLPSGLL 264

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 83.8 bits (207), Expect = 3e-17
 Identities = 44/216 (20%), Positives = 89/216 (41%), Gaps = 28/216 (12%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
            +    + S LP     L ++++     N+   +LP   ++L    +L   NN+     P
Sbjct: 127 WIFGNQLTS-LPVLPPGLQELSVSD---NQL-ASLPALPSELC---KLWAYNNQLT-SLP 177

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVL 247
              +    L+ L +  N+    +P      +L  ++  NNR +  LP       +  L++
Sbjct: 178 ---MLPSGLQELSVSDNQLA-SLPTLP--SELYKLWAYNNRLT-SLPALPSG--LKELIV 228

Query: 248 ANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD 307
           + N+    LP+        L E++++ N L S LP        +    V  N+L   LP+
Sbjct: 229 SGNRL-TSLPVLPSE----LKELMVSGNRLTS-LPMLPS---GLLSLSVYRNQLT-RLPE 278

Query: 308 TIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFS 343
           ++  ++S   +N+  N LS     ++  + +   +S
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 4e-16
 Identities = 48/247 (19%), Positives = 85/247 (34%), Gaps = 37/247 (14%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
            +   ++ S LP     L  + +     N+   +LP     L  L               
Sbjct: 67  VIPDNNLTS-LPALPPELRTLEVSG---NQL-TSLPVLPPGLLELSIFSNPLTHLPA--- 118

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLV 246
                   L  L +  N+    +P      ++L    +++N+ +  LP       +  L 
Sbjct: 119 ----LPSGLCKLWIFGNQLT-SLPVLPPGLQELS---VSDNQLA-SLPALPSE--LCKLW 167

Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP 306
             NN+    LP+    + + L+   +++N L S LP     L  +       N+L   LP
Sbjct: 168 AYNNQLT-SLPMLPSGL-QELS---VSDNQLAS-LPTLPSELYKL---WAYNNRLT-SLP 217

Query: 307 DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKR 366
              A  + L++L V+ N L+ ++P        L+      N  T    +   L      R
Sbjct: 218 ---ALPSGLKELIVSGNRLT-SLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVYR 270

Query: 367 NCLRDKP 373
           N L   P
Sbjct: 271 NQLTRLP 277

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.6 bits (165), Expect = 4e-12
 Identities = 35/188 (18%), Positives = 63/188 (33%), Gaps = 41/188 (21%)

Query: 172 LFELDLSNNRFAGKFPYVVL------------------GLPKLKFLDLRYNEFEGKIPKA 213
              L++  +      P  +                     P+L+ L++  N+    +P  
Sbjct: 42  NAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVL 99

Query: 214 LFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVIL 272
                +L             LP  +       L +  N+    LP+        L E+ +
Sbjct: 100 PPGLLELSIFSNPLTHLP-ALPSGLCK-----LWIFGNQLT-SLPVLPPG----LQELSV 148

Query: 273 TNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDS 332
           ++N L S LP     L  +       N+L   LP      + LQ+L+V+ N L+ ++P  
Sbjct: 149 SDNQLAS-LPALPSELCKL---WAYNNQL-TSLPMLP---SGLQELSVSDNQLA-SLPTL 199

Query: 333 VCSLPNLR 340
              L  L 
Sbjct: 200 PSELYKLW 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.8 bits (203), Expect = 4e-17
 Identities = 38/197 (19%), Positives = 75/197 (38%), Gaps = 15/197 (7%)

Query: 161 TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIP-KALFDKDL 219
           +     + +  L  L ++ ++     P  +  L  L  L L YN+ E   P  +L    L
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASL--TSL 201

Query: 220 DAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278
                  N+ + ++   + N   ++ L + NNK     PL   N+S+ L  + +  N + 
Sbjct: 202 HYFTAYVNQIT-DIT-PVANMTRLNSLKIGNNKITDLSPL--ANLSQ-LTWLEIGTNQIS 256

Query: 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN 338
                 +  L  + + +V  N++       +  ++ L  L + +N L     + +  L N
Sbjct: 257 D--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 339 LRNFSFDYNFFTGESPV 355
           L       N  T   P+
Sbjct: 313 LTTLFLSQNHITDIRPL 329

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 75.3 bits (186), Expect = 6e-15
 Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 20/231 (8%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           ++LN   I       L  L  +   ++ TN+   T   +   L  L EL L+ +  +   
Sbjct: 71  LNLNGNQITD--ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDIS 126

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSP-VSV 244
           P  +  L K+  L+L  N         L +   L+ + +  ++   ++   I N   +  
Sbjct: 127 P--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVK-DVT-PIANLTDLYS 181

Query: 245 LVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE 304
           L L  N+    +     +++  L+      N +       +  +  +    +  NK+   
Sbjct: 182 LSLNYNQIED-IS-PLASLTS-LHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITD- 235

Query: 305 LPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV 355
               +A ++ L  L +  N +S    ++V  L  L+  +   N  +  S +
Sbjct: 236 -LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISVL 283

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 38/222 (17%), Positives = 86/222 (38%), Gaps = 18/222 (8%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
           +L      S     L  +  +    V  ++     P     L  L+ L L+ N+     P
Sbjct: 138 NLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIP-KALFDKDLDAVFINNNRFSFELPDNIGNSP-VSVL 245
             +  L  L +     N+     P   +    L+++ I NN+ + +L   + N   ++ L
Sbjct: 195 --LASLTSLHYFTAYVNQITDITPVANM--TRLNSLKIGNNKIT-DLS-PLANLSQLTWL 248

Query: 246 VLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL 305
            +  N+    +  +  ++++ L  + + +N +       +  L  +    ++ N+L  E 
Sbjct: 249 EIGTNQISD-IN-AVKDLTK-LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303

Query: 306 PDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
            + I  +T+L  L ++ N ++   P  + SL  + +  F   
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.4 bits (176), Expect = 9e-14
 Identities = 29/189 (15%), Positives = 65/189 (34%), Gaps = 12/189 (6%)

Query: 168 KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNN 227
            L       L               L  +  L +   +    I    +  +L+ + +N N
Sbjct: 20  DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQGIEYLTNLEYLNLNGN 76

Query: 228 RFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL 287
           + + ++        ++ L +  NK       +  N++  L E+ L  + +       +  
Sbjct: 77  QIT-DISPLSNLVKLTNLYIGTNKITD--ISALQNLT-NLRELYLNEDNISD--ISPLAN 130

Query: 288 LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           L  +   ++  N  +      ++ MT L  L V  + +       + +L +L + S +YN
Sbjct: 131 LTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYN 187

Query: 348 FFTGESPVC 356
                SP+ 
Sbjct: 188 QIEDISPLA 196

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 11/163 (6%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIP-KALFDKDLDAVF 223
               L  L       N+     P  V  + +L  L +  N+     P   L    L  + 
Sbjct: 194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANL--SQLTWLE 249

Query: 224 INNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPE 283
           I  N+ S ++      + + +L + +N+    +     N+S+ LN + L NN L +   E
Sbjct: 250 IGTNQIS-DINAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQ-LNSLFLNNNQLGNEDME 305

Query: 284 EIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
            IG L N+T   +S N +    P  +A ++ +   + A+ ++ 
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 22/178 (12%), Positives = 52/178 (29%), Gaps = 35/178 (19%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFEL 233
            L          FP     L +     L+       + +   +                 
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVTQEELES---------------- 45

Query: 234 PDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTV 293
                   ++ LV+A  K    +      ++  L  + L  N +       +  L  +T 
Sbjct: 46  --------ITKLVVAGEKVAS-IQ-GIEYLTN-LEYLNLNGNQITD--ISPLSNLVKLTN 92

Query: 294 FDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG 351
             +  NK+       +  +T+L++L +  + +S      + +L  + + +   N    
Sbjct: 93  LYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS 146

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.7 bits (204), Expect = 6e-17
 Identities = 45/210 (21%), Positives = 75/210 (35%), Gaps = 25/210 (11%)

Query: 138 LPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197
                      AL   N N     L      +    EL L+    +   P  +   P++ 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNL--PPQIT 83

Query: 198 FLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLP 257
            L++  N     +P+      L+ +   +NR S  LP+   +  +  L + NN+    LP
Sbjct: 84  VLEITQNALI-SLPELP--ASLEYLDACDNRLS-TLPELPAS--LKHLDVDNNQLT-MLP 136

Query: 258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQ 317
                    L  +   NN L   LPE    L+   V  V  N+L   LP+      SL+ 
Sbjct: 137 ELPAL----LEYINADNNQLTM-LPELPTSLE---VLSVRNNQL-TFLPE---LPESLEA 184

Query: 318 LNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           L+V+ N+L  ++P       +       + 
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFR 213

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 70.0 bits (171), Expect = 6e-13
 Identities = 39/202 (19%), Positives = 74/202 (36%), Gaps = 23/202 (11%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
           ++    + S LPE    L  +       NR   TLP     LK    LD+ NN+     P
Sbjct: 86  EITQNALIS-LPELPASLEYLDACD---NRL-STLPELPASLK---HLDVDNNQLT-MLP 136

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVL 247
                   L++++   N+    +P+      L+ + + NN+ +  LP+   +  +  L +
Sbjct: 137 E---LPALLEYINADNNQLT-MLPELP--TSLEVLSVRNNQLT-FLPELPES--LEALDV 187

Query: 248 ANNKFHGCLPLSFGNMSRTLNEVI---LTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE 304
           + N     LP        +    I      N +   +PE I  L       +  N L   
Sbjct: 188 STNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSR 245

Query: 305 LPDTIAEMTSLQQLNVAHNMLS 326
           + +++++ T+    +      S
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 245 LVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI------GLLKNVTVFDVSY 298
             L+ N F+  +  ++ +     ++       L      E        L+   +   ++ 
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDK--WEKQALPGENRNEAVSLLKECLINQFSELQLNR 68

Query: 299 NKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNL 339
             L   LPD +     +  L +  N L  ++P+   SL  L
Sbjct: 69  LNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASLEYL 105

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 82.1 bits (203), Expect = 9e-17
 Identities = 38/191 (19%), Positives = 66/191 (34%), Gaps = 8/191 (4%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGK-IPKALFDK--DLDA 221
              KLK L  L  ++N+    F  V   LP L+FLDL  N    K            L  
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 222 VFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280
           + ++ N     +  N      +  L   ++        S     R L  + +++      
Sbjct: 378 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 281 LPEEIGLLKNVTVFDVSYNKLMGEL-PDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNL 339
                  L ++ V  ++ N       PD   E+ +L  L+++   L    P +  SL +L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 340 RNFSFDYNFFT 350
           +  +   N   
Sbjct: 497 QVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 5e-16
 Identities = 46/190 (24%), Positives = 75/190 (39%), Gaps = 10/190 (5%)

Query: 165 SFNKLKLLFELDLSNNR--FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDA 221
           S   L  L  LDLS N   F G       G   LK+LDL +N     +       + L+ 
Sbjct: 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 400

Query: 222 VFINNNRFSFELPDNIGNSPVS--VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279
           +   ++        ++  S  +   L +++          F  +S  L  + +  N    
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQE 459

Query: 280 CLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV-CSLP 337
               +I   L+N+T  D+S  +L    P     ++SLQ LN+A N L  +VPD +   L 
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLT 518

Query: 338 NLRNFSFDYN 347
           +L+      N
Sbjct: 519 SLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.9 bits (187), Expect = 8e-15
 Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 12/196 (6%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLD 220
             SF     L  LDLS              L  L  L L  N  +  +    F     L 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQ 103

Query: 221 AVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGC-LPLSFGNMSRTLNEVILTNNGLH 278
            +       +      IG+   +  L +A+N      LP  F N++  L  + L++N + 
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQ 162

Query: 279 SCLPEEIGLLKNVTVF----DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334
           S    ++ +L  + +     D+S N +   +     +   L +L + +N  S  V  +  
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 335 S-LPNLRNFSFDYNFF 349
             L  L         F
Sbjct: 222 QGLAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 2e-14
 Identities = 39/190 (20%), Positives = 66/190 (34%), Gaps = 13/190 (6%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSF 231
            LDLS N       Y     P+L+ LDL   E +  I    +     L  + +  N    
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89

Query: 232 ELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC-LPEEIGLL 288
            L      G S +  LV              G++   L E+ + +N + S  LPE    L
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNL 148

Query: 289 KNVTVFDVSYNKLMGELPDTIAEMTSLQ----QLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
            N+   D+S NK+       +  +  +      L+++ N ++  +         L   + 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 345 DYNFFTGESP 354
             NF +    
Sbjct: 208 RNNFDSLNVM 217

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 32/204 (15%), Positives = 70/204 (34%), Gaps = 14/204 (6%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL-GLPKLKFLDLRYNEFEGKIPKAL 214
           + +   +   FN L  +    L +        +    G   L+ ++ ++ +F     K+L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 215 FDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFH--GCLPLSFGNMSRTLNEVIL 272
             K L      +N+        +    +  L L+ N     GC   S    + +L  + L
Sbjct: 328 --KRLT---FTSNKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDL 380

Query: 273 TNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIA--EMTSLQQLNVAHNMLSGTVP 330
           + NG+ + +      L+ +   D  ++ L  ++ +      + +L  L+++H        
Sbjct: 381 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFN 438

Query: 331 DSVCSLPNLRNFSFDYNFFTGESP 354
                L +L       N F     
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 36/194 (18%), Positives = 68/194 (35%), Gaps = 17/194 (8%)

Query: 176 DLSNNRFAGKFPYVVLGLPK-LKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFE 232
                 F      +   LP   K LDL +N     +    F    +L  + ++       
Sbjct: 13  QCMELNFY----KIPDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-T 66

Query: 233 LPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKN 290
           + D      S +S L+L  N        +F  +S  L +++     L S     IG LK 
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKT 125

Query: 291 VTVFDVSYNKLM-GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNF----SFD 345
           +   +V++N +   +LP+  + +T+L+ L+++ N +       +  L  +          
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 346 YNFFTGESPVCLDL 359
            N      P     
Sbjct: 186 LNPMNFIQPGAFKE 199

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 9/169 (5%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRS-FNKLKLLFELDLSNNRFAGK 185
           +DL+   + + +      L  +       +        S F  L+ L  LD+S+      
Sbjct: 378 LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 186 FPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSFELPDNI--GNSP 241
           F  +  GL  L+ L +  N F+      +F +  +L  + ++  +   +L        S 
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSS 495

Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKN 290
           + VL +A+N+    +P    +   +L ++ L  N    C    I  L  
Sbjct: 496 LQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWD-CSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 20/208 (9%)

Query: 162 LPRSFNKLKLLFELDL------SNNRFAGKFPYVVLGLPKLKF--LDLRYNEFEGKIPKA 213
           +      L  L    L      +           + GL  L      L Y ++       
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 214 LFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVI 271
           LF+   ++ +  + +      + D   N     L L N KF     L   +    L  + 
Sbjct: 277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKS----LKRLT 331

Query: 272 LTNNGLHSCLPEEIGLLKNVTVFDVSYNKL--MGELPDTIAEMTSLQQLNVAHNMLSGTV 329
            T+N   +    E+ L  ++   D+S N L   G    +    TSL+ L+++ N +  T+
Sbjct: 332 FTSNKGGN-AFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TM 388

Query: 330 PDSVCSLPNLRNFSFDYNFFTGESPVCL 357
             +   L  L +  F ++     S   +
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 3/129 (2%)

Query: 222 VFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL 281
                  F  ++PDN+  S    L L+ N        SF +    L  + L+   + +  
Sbjct: 12  YQCMELNFY-KIPDNLPFS-TKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIE 68

Query: 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN 341
                 L +++   ++ N +        + ++SLQ+L      L+      +  L  L+ 
Sbjct: 69  DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128

Query: 342 FSFDYNFFT 350
            +  +N   
Sbjct: 129 LNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 42/200 (21%), Positives = 67/200 (33%), Gaps = 19/200 (9%)

Query: 162 LPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF----LDLRYNEFEGKIPKALFDK 217
           LP  F+ L  L  LDLS+N+    +   +  L ++      LDL  N      P A  + 
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 218 DLDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGC-----LPLSFGNMSRTLNEV 270
            L  + + NN  S  +      G + + V  L   +F           S       L   
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 271 ILTNNGLHSCLPEEIGL---LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327
                 L   L + I L   L NV+ F +    +   + D  +     Q L + +     
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD-FSYNFGWQHLELVNCKFGQ 318

Query: 328 TVPDSVCSLPNLRNFSFDYN 347
                   L +L+  +F  N
Sbjct: 319 ---FPTLKLKSLKRLTFTSN 335

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 34/215 (15%), Positives = 72/215 (33%), Gaps = 19/215 (8%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLD 220
             +F+ L  L +L       A    + +  L  LK L++ +N  +       F    +L+
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152

Query: 221 AVFINNNRFSFELPDNIGN-----SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275
            + +++N+       ++            L L+ N  +   P +F  +   L+++ L NN
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR--LHKLTLRNN 210

Query: 276 GLHSCLPEE-IGLLKNVTVFDVSYNKLMGELPDT---IAEMTSLQQLNVAHNMLSG---- 327
                + +  I  L  + V  +   +   E        + +  L  L +    L+     
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 328 --TVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQ 360
              + D    L N+ +FS              +  
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 36/252 (14%), Positives = 70/252 (27%), Gaps = 26/252 (10%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFA-GK 185
           + L    I S        L+ +                    LK L EL++++N     K
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 186 FPYVVLGLPKLKFLDLRYNEFEGKIPKALFD---------KDLDAVFINNNRFSFELPDN 236
            P     L  L+ LDL  N+ +  I                 LD   ++ N  +  +   
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLD---LSLNPMN-FIQPG 195

Query: 237 IGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC---LPEEIGLLKNVT 292
                 +  L L NN     +  +       L    L      +       +   L+ + 
Sbjct: 196 AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255

Query: 293 VFDVSYNKLMG------ELPDTIAEMTSLQQLNVAHNMLSGTVPDS-VCSLPNLRNFSFD 345
              +   +L        ++ D    +T++   ++    +      S      +L   +  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

Query: 346 YNFFTGESPVCL 357
           +  F       L
Sbjct: 316 FGQFPTLKLKSL 327

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 78.8 bits (194), Expect = 1e-15
 Identities = 42/207 (20%), Positives = 68/207 (32%), Gaps = 28/207 (13%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV 222
              F+    L  L +SNN               L+ L L  N     +  +L    L   
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI-PSLFHA 197

Query: 223 FINNNRFSFELPDNIGNSPVSVLVLANNKFHG----------CLPLS---------FGNM 263
            ++ N  S  L   I    V  L  ++N  +            L L            N 
Sbjct: 198 NVSYNLLS-TLAIPIA---VEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNY 253

Query: 264 SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHN 323
              L EV L+ N L   +      ++ +    +S N+L+  L      + +L+ L+++HN
Sbjct: 254 PG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 311

Query: 324 MLSGTVPDSVCSLPNLRNFSFDYNFFT 350
            L   V  +      L N   D+N   
Sbjct: 312 HLL-HVERNQPQFDRLENLYLDHNSIV 337

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 74.2 bits (182), Expect = 3e-14
 Identities = 43/249 (17%), Positives = 92/249 (36%), Gaps = 20/249 (8%)

Query: 133 DIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKL--LFELDLSNNRFAGKFPYVV 190
               Y   +  L  D   + V+ +     +   F  + L     +   N+        ++
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71

Query: 191 LGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNI--GNSPVSVLV 246
               +++ L+L   + E +I    F     +  +++  N     LP ++      ++VLV
Sbjct: 72  DSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129

Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGEL 305
           L  N         F N  + L  + ++NN L   + ++      ++    +S N+L   +
Sbjct: 130 LERNDLSSLPRGIFHNTPK-LTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL-THV 186

Query: 306 PDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG-ESPVCLDLQGFDD 364
             ++  + SL   NV++N+LS     ++     +      +N       PV ++L     
Sbjct: 187 DLSL--IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKL 239

Query: 365 KRNCLRDKP 373
           + N L D  
Sbjct: 240 QHNNLTDTA 248

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 16/187 (8%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLD 220
           P  F  + LL  L L  N  +     +    PKL  L +  N  E +I    F     L 
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQ 174

Query: 221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280
            + +++NR +  +  ++  S +    ++ N                + E+  ++N ++  
Sbjct: 175 NLQLSSNRLT-HVDLSLIPS-LFHANVSYNLLSTLAIPIA------VEELDASHNSINV- 225

Query: 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLR 340
           +     +   +T+  + +N L  +    +     L ++++++N L   +      +  L 
Sbjct: 226 VRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 281

Query: 341 NFSFDYN 347
                 N
Sbjct: 282 RLYISNN 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 161 TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLD 220
            L      +  L  LDLS+N              +L+ L L +N     +  +     L 
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTH-HTLK 348

Query: 221 AVFINNNRFS 230
            + +++N + 
Sbjct: 349 NLTLSHNDWD 358

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 37/212 (17%), Positives = 79/212 (37%), Gaps = 23/212 (10%)

Query: 162 LPRSFNKLKLLFELDLSNNRFAGKFPYV--VLGLPKLKFLDLRYNEFEGKIPKALF---- 215
           L  SF KL  L  +D S+N+      +    L    L F  L  N    ++         
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 216 ---DKDLDAVFINNNRFSFELPDNIGNSP-------------VSVLVLANNKFHGCLPLS 259
              +  L+ + ++ N ++ ++  N  N+              +       +        +
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 260 FGNMSRT-LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQL 318
           F  ++R+ +  + L++  + S        LK++ V +++YNK+     +    + +LQ L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 319 NVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           N+++N+L      +   LP +       N   
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 75.2 bits (185), Expect = 2e-14
 Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 26/231 (11%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEG-KIPKALFDKDLDA 221
             +F  L  +  +DL  N  A         L KL+ LDLR N         ++ D  L  
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 222 ---VFINNNRFSFELPDNIGNSPVS--------------VLVLANNKFHGCLPLSFGNMS 264
              V +     +  L     N   +              +L+L  N+F  C      + +
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 265 RTLNEVILTNNGLHSCLPEEIGL-----LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN 319
            +L ++ L  N L      E+       L ++ V  +++N L    P   + +T+L+ L+
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 320 VAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP-VCLDLQGFDDKRNCL 369
           +  N L+  +  +     NL       N     +P V + L   D   N  
Sbjct: 511 LNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.5 bits (183), Expect = 3e-14
 Identities = 39/249 (15%), Positives = 73/249 (29%), Gaps = 26/249 (10%)

Query: 127 IDLNHGDIAS-YLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKL--LFELDLSNNRFA 183
           +DL+   I S YL    G L  +     ++N+           L+   L    L+ N   
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 184 GKFPYVVLGLPK------LKFLDLRYNEFEGKIPKALFD-------------KDLDAVFI 224
            +                L+ LD+  N +   I     +               +     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 225 NNNR---FSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL 281
             +            +  S V  L L++          F  +   L  + L  N ++   
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINKIA 306

Query: 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN 341
            E    L N+ V ++SYN L          +  +  +++  N ++     +   L  L+ 
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 342 FSFDYNFFT 350
                N  T
Sbjct: 367 LDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 38/235 (16%), Positives = 69/235 (29%), Gaps = 37/235 (15%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPK--LKFLDLRYNEFEGKIPKA 213
           N    +   S      +       +           GL +  ++ LDL +      +   
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSR 284

Query: 214 LFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
           +F+                         + VL LA NK +     +F  +   L  + L+
Sbjct: 285 VFE---------------------TLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLS 322

Query: 274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
            N L          L  V   D+  N +      T   +  LQ L++  N L+     ++
Sbjct: 323 YNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TI 377

Query: 334 CSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRL 388
             +P++ +     N       + L         N L +       L    FL R+
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLEN-------LDILYFLLRV 425

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.3 bits (167), Expect = 3e-12
 Identities = 42/209 (20%), Positives = 72/209 (34%), Gaps = 32/209 (15%)

Query: 156 NRFCG--TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKA 213
            RFC    +P+  N  +    L LS N            L +L+ L+L        I K 
Sbjct: 11  YRFCNLTQVPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 214 LFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
            F                          + +L L ++K +   P +F  +   L E+ L 
Sbjct: 68  AFR---------------------NLPNLRILDLGSSKIYFLHPDAFQGLFH-LFELRLY 105

Query: 274 NNGLHSCLPEEIGL--LKNVTVFDVSYNKLMG-ELPDTIAEMTSLQQLNVAHNMLSGTVP 330
             GL   + ++     LK +T  D+S N++    L  +  ++ SL+ ++ + N +     
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165

Query: 331 DSVCSL--PNLRNFSFDYNFFTGESPVCL 357
             +  L    L  FS   N       V  
Sbjct: 166 HELEPLQGKTLSFFSLAANSLYSRVSVDW 194

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV 222
              F  L  L  L L++N      P V   L  L+ L L  N     +       +L+ +
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHNDLPANLEIL 531

Query: 223 FINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL- 281
            I+ N+       ++  S   + +  N     C   +F N     N  I        C+ 
Sbjct: 532 DISRNQLL-APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVY 590

Query: 282 PEEIGLLKNVTVFDVS 297
           P+       V++F +S
Sbjct: 591 PDS---FSGVSLFSLS 603

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 268 NEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327
                    L   +P+   +L       +S+N +      +   +  LQ L +       
Sbjct: 7   RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 328 TVPDSVC-SLPNLRNFSFDYNFFT 350
           T+      +LPNLR      +   
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIY 86

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 43/207 (20%), Positives = 67/207 (32%), Gaps = 28/207 (13%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV 222
              F+    L  L +SNN               L+ L L  N     +  +L    L   
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI-PSLFHA 191

Query: 223 FINNNRFSFELPDNI--------GNSPVSV----------LVLANNKFHGCLPLSFGNMS 264
            ++ N  S  L   I         NS   V          L L +N           N  
Sbjct: 192 NVSYNLLS-TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TA-WLLNYP 248

Query: 265 RTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHN 323
             L EV L+ N L   +       ++ +    +S N+L+  L      + +L+ L+++HN
Sbjct: 249 G-LVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHN 305

Query: 324 MLSGTVPDSVCSLPNLRNFSFDYNFFT 350
            L   V  +      L N   D+N   
Sbjct: 306 HLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 42/241 (17%), Positives = 90/241 (37%), Gaps = 20/241 (8%)

Query: 141 ELGLLADIALFHVNTNRFCGTLPRSFNKLKL--LFELDLSNNRFAGKFPYVVLGLPKLKF 198
           +  L  D   + V+ +     +   F  + L     +   N+        ++    +++ 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 199 LDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNSPVS--VLVLANNKFHG 254
           L+L   + E +I    F     +  +++  N     LP ++  +     VLVL  N    
Sbjct: 74  LNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 255 CLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMT 313
                F N  + L  + ++NN L   + ++      ++    +S N+L   +  ++  + 
Sbjct: 132 LPRGIFHNTPK-LTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRL-THVDLSL--IP 186

Query: 314 SLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG-ESPVCLDLQGFDDKRNCLRDK 372
           SL   NV++N+LS     ++     +      +N       PV ++L     + N L D 
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 241

Query: 373 P 373
            
Sbjct: 242 A 242

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 35/242 (14%), Positives = 81/242 (33%), Gaps = 30/242 (12%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +   +  +       L     + L ++N  +       +F     + +L +  N      
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSFELPDNI--GNSPV 242
           P+V   +P L  L L  N+    +P+ +F     L  + ++NN     + D+     + +
Sbjct: 110 PHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSL 167

Query: 243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL--------------- 287
             L L++N+      +    +   L    ++ N L + L   I +               
Sbjct: 168 QNLQLSSNRLTH---VDLSLIPS-LFHANVSYNLLST-LAIPIAVEELDASHNSINVVRG 222

Query: 288 --LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFD 345
                +T+  + +N L       +     L ++++++N L   +      +  L      
Sbjct: 223 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 346 YN 347
            N
Sbjct: 281 NN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 32/183 (17%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
             + +  LF  ++S N  +            ++ LD  +N     +   +   +L  + +
Sbjct: 181 DLSLIPSLFHANVSYNLLS-TLA----IPIAVEELDASHNSIN-VVRGPVN-VELTILKL 233

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
            +N  + +    +    +  + L+ N+    +   F  M R L  + ++NN L + L   
Sbjct: 234 QHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLVA-LNLY 290

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQ---------------------QLNVAHN 323
              +  + V D+S+N L+  +     +   L+                      L ++HN
Sbjct: 291 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349

Query: 324 MLS 326
              
Sbjct: 350 DWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 1e-09
 Identities = 30/200 (15%), Positives = 68/200 (34%), Gaps = 31/200 (15%)

Query: 155 TNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKAL 214
                  +  +     + +++ +        F +  + L   K +  + +    K+P AL
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64

Query: 215 FD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVIL 272
            D  + ++ + +N+ +   E+                          F      + ++ +
Sbjct: 65  LDSFRQVELLNLNDLQIE-EIDTYA----------------------FAYAHT-IQKLYM 100

Query: 273 TNNGLHSCLPEEIGL-LKNVTVFDVSYNKLMGELPDTI-AEMTSLQQLNVAHNMLSGTVP 330
             N +   LP  +   +  +TV  +  N L   LP  I      L  L++++N L     
Sbjct: 101 GFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 331 DSVCSLPNLRNFSFDYNFFT 350
           D+  +  +L+N     N  T
Sbjct: 159 DTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 17/137 (12%), Positives = 48/137 (35%), Gaps = 9/137 (6%)

Query: 214 LFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
           +  +  +   I++N     L  +     V + +   + + G   ++  N       V   
Sbjct: 3   VKPRQPEYKCIDSN-----LQYDCVFYDVHIDMQTQDVYFGFEDITLNN----QKIVTFK 53

Query: 274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
           N+ +       +   + V + +++  ++        A   ++Q+L +  N +    P   
Sbjct: 54  NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 113

Query: 334 CSLPNLRNFSFDYNFFT 350
            ++P L     + N  +
Sbjct: 114 QNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 161 TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLD 220
            L      +  L  LDLS+N              +L+ L L +N     +  +     L 
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT-LK 342

Query: 221 AVFINNNRFS 230
            + +++N + 
Sbjct: 343 NLTLSHNDWD 352

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.3 bits (178), Expect = 8e-14
 Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 29/253 (11%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
             +   +   LPE    L  + + + N       LP        L  L +SNN+   K P
Sbjct: 97  VASCNSLTE-LPELPQSLKSLLVDNNNLKALSD-LPPL------LEYLGVSNNQLE-KLP 147

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVL 247
             +     LK +D+  N  + K+P       L+ +   NN+   ELP+      ++ +  
Sbjct: 148 -ELQNSSFLKIIDVDNNSLK-KLPDLP--PSLEFIAAGNNQLE-ELPELQNLPFLTAIYA 202

Query: 248 ANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD 307
            NN     LP    +    L  ++  NN L      E+  L  +T      N L   LPD
Sbjct: 203 DNNSLK-KLPDLPLS----LESIVAGNNILEE--LPELQNLPFLTTIYADNNLLK-TLPD 254

Query: 308 TIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRN 367
                 SL+ LNV  N L+  +P+      +L       N F+G S +  +L   +   N
Sbjct: 255 LP---PSLEALNVRDNYLT-DLPE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 307

Query: 368 CLRDKPRQRSTLQ 380
            +R       +L+
Sbjct: 308 EIRSLCDLPPSLE 320

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 51/275 (18%), Positives = 89/275 (32%), Gaps = 52/275 (18%)

Query: 138 LPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLF-------------ELDLSNNRFAG 184
           +P E   +     ++   + +    P    + + +              EL+L+N     
Sbjct: 26  MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-S 84

Query: 185 KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVS 243
             P      P L+ L    N    ++P+     K L     N    S +LP  +      
Sbjct: 85  SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-DLPPLL-----E 134

Query: 244 VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303
            L ++NN+    LP    N S  L  + + NN L   LP+      ++       N+L  
Sbjct: 135 YLGVSNNQLE-KLP-ELQNSS-FLKIIDVDNNSLKK-LPDLPP---SLEFIAAGNNQLE- 186

Query: 304 ELPDTIAEMTSLQQLNVAHNMLSG------------------TVPDSVCSLPNLRNFSFD 345
           ELP+ +  +  L  +   +N L                         + +LP L     D
Sbjct: 187 ELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 245

Query: 346 YNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQ 380
            N       +   L+  + + N L D P    +L 
Sbjct: 246 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLT 280

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 44/227 (19%), Positives = 75/227 (33%), Gaps = 38/227 (16%)

Query: 161 TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLD 220
            +P     +K   E   + + +    P       ++    LR             D+   
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR----------DCLDRQAH 74

Query: 221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSR--------------- 265
            + +NN   S  LP+   +  +  LV + N     LP    ++                 
Sbjct: 75  ELELNNLGLS-SLPELPPH--LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 266 -TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNM 324
             L  + ++NN L   LP E+     + + DV  N L  +LPD      SL+ +   +N 
Sbjct: 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQ 184

Query: 325 LSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRD 371
           L       + +LP L     D N       + L L+      N L +
Sbjct: 185 L--EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE 229

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 44/237 (18%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           I  ++  + + LP+    L  + +           LP     L     LD+S N F+   
Sbjct: 242 IYADNNLLKT-LPDLPPSLEALNVRDNYLT----DLPELPQSLT---FLDVSENIFS-GL 292

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLV 246
             +    P L +L+   NE    +        L+ + ++NN+   ELP       +  L+
Sbjct: 293 SEL---PPNLYYLNASSNEIR-SLCDLP--PSLEELNVSNNKLI-ELPALPPR--LERLI 343

Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIG----------------LLKN 290
            + N     +P    N    L ++ +  N L    P+                   L +N
Sbjct: 344 ASFNHLA-EVPELPQN----LKQLHVEYNPL-REFPDIPESVEDLRMNSHLAEVPELPQN 397

Query: 291 VTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           +    V  N L  E PD      S++ L +    +      +  +   L +  F+++
Sbjct: 398 LKQLHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 18/99 (18%)

Query: 265 RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAE------------- 311
             L E +  ++ L   +P E   +K+ T +  ++++     P    E             
Sbjct: 11  TFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 312 MTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
                +L + +  LS ++P+     P+L +     N  T
Sbjct: 70  DRQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT 104

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 8e-14
 Identities = 37/195 (18%), Positives = 68/195 (34%), Gaps = 13/195 (6%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
               L  L EL L+ N+        +  L  L  LDL  N+     P +   K L  + +
Sbjct: 216 PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTK-LTELKL 272

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
             N+ S  +    G + ++ L L  N+          N+   L  + L  N +       
Sbjct: 273 GANQIS-NISPLAGLTALTNLELNENQLED--ISPISNLKN-LTYLTLYFNNISD--ISP 326

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +  L  +       NK+      ++A +T++  L+  HN +S   P  + +L  +     
Sbjct: 327 VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382

Query: 345 DYNFFTGESPVCLDL 359
           +   +T         
Sbjct: 383 NDQAWTNAPVNYKAN 397

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 8e-13
 Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 18/194 (9%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVF 223
               L  L  L L NN+     P  +  L  L  L+L  N        AL     L  + 
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLS 162

Query: 224 INNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282
             N          + N + +  L +++NK           ++  L  +I TNN +     
Sbjct: 163 FGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTN-LESLIATNNQISD--I 214

Query: 283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNF 342
             +G+L N+    ++ N+L      T+A +T+L  L++A+N +S   P  +  L  L   
Sbjct: 215 TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270

Query: 343 SFDYNFFTGESPVC 356
               N  +  SP+ 
Sbjct: 271 KLGANQISNISPLA 284

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 37/191 (19%), Positives = 76/191 (39%), Gaps = 14/191 (7%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
           S   L  +  L              V  L  L  ++   N+     P       L  + +
Sbjct: 41  SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITPLKNL-TKLVDILM 97

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
           NNN+ + ++      + ++ L L NN+     PL   N++  LN + L++N +       
Sbjct: 98  NNNQIA-DITPLANLTNLTGLTLFNNQITDIDPL--KNLTN-LNRLELSSNTISD--ISA 151

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +  L ++       N++    P  +A +T+L++L+++ N +S      +  L NL +   
Sbjct: 152 LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 206

Query: 345 DYNFFTGESPV 355
             N  +  +P+
Sbjct: 207 TNNQISDITPL 217

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 44/256 (17%), Positives = 83/256 (32%), Gaps = 54/256 (21%)

Query: 140 EELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL 199
             LG+L ++    +N N+       +   L  L +LDL+NN+ +   P  + GL KL  L
Sbjct: 215 TPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270

Query: 200 DLRYNEFEGKIP-KALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPL 258
            L  N+     P   L    L  + +N N+   ++        ++ L L  N      P+
Sbjct: 271 KLGANQISNISPLAGL--TALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDISPV 327

Query: 259 S--------------------FGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSY 298
           S                      N++  +N +   +N +       +  L  +T   ++ 
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSSLANLTN-INWLSAGHNQISD--LTPLANLTRITQLGLND 384

Query: 299 NKLMGE----------------------LPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL 336
                                        P TI++  S  + ++  N+ S T  +   + 
Sbjct: 385 QAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT-NEVSYTF 443

Query: 337 PNLRNFSFDYNFFTGE 352
                       F+G 
Sbjct: 444 SQPVTIGKGTTTFSGT 459

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 8/166 (4%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
             + LK L  L L  N  +   P  V  L KL+ L    N+    +       +++ +  
Sbjct: 304 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-VSSLANLTNINWLSA 360

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
            +N+ S +L      + ++ L L +  +    P+++       N V      L +  P  
Sbjct: 361 GHNQIS-DLTPLANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGALIA--PAT 416

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVP 330
           I    + T  D+++N       +     +    +       SGTV 
Sbjct: 417 ISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 32/192 (16%), Positives = 69/192 (35%), Gaps = 18/192 (9%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVF 223
           +   L    +  L               L ++  L         K    +    +L  + 
Sbjct: 19  TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQIN 74

Query: 224 INNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282
            +NN+ + ++   + N   +  +++ NN+     PL   N++  L  + L NN +     
Sbjct: 75  FSNNQLT-DIT-PLKNLTKLVDILMNNNQIADITPL--ANLT-NLTGLTLFNNQITD--I 127

Query: 283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNF 342
           + +  L N+   ++S N +       ++ +TSLQQL+  + +        + +L  L   
Sbjct: 128 DPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERL 182

Query: 343 SFDYNFFTGESP 354
               N  +  S 
Sbjct: 183 DISSNKVSDISV 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 10/225 (4%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +  +     + +PE  G+  +  L  +  NR        F     L EL+L+ N  +   
Sbjct: 16  VLCHRKRFVA-VPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 187 PYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNI--GNSPV 242
           P     L  L+ L LR N  +  IP  +F    +L  + I+ N+    L D +      +
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNL 130

Query: 243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLM 302
             L + +N        +F  ++  L ++ L    L S   E +  L  + V  + +  + 
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 303 GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
                +   +  L+ L ++H     T+  +     NL + S  + 
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 33/186 (17%), Positives = 66/186 (35%), Gaps = 9/186 (4%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSF 231
            LDL  NR            P L+ L+L  N     +    F+   +L  + + +NR   
Sbjct: 36  LLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK- 93

Query: 232 ELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLL 288
            +P  +  G S ++ L ++ NK    L   F ++   L  + + +N L   +       L
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDL-VYISHRAFSGL 151

Query: 289 KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348
            ++    +    L     + ++ +  L  L + H  ++     S   L  L+     +  
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 349 FTGESP 354
           +     
Sbjct: 212 YLDTMT 217

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 30/189 (15%), Positives = 52/189 (27%), Gaps = 51/189 (26%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLD 220
             SF +L  L  L++S+  +        L    L  L + +      +P         L 
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLR 251

Query: 221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280
            + ++ N  S  +  +                          + R L E+ L    L + 
Sbjct: 252 FLNLSYNPIS-TIEGS----------------------MLHELLR-LQEIQLVGGQL-AV 286

Query: 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLR 340
           +                        P     +  L+ LNV+ N L+        S+ NL 
Sbjct: 287 VE-----------------------PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLE 323

Query: 341 NFSFDYNFF 349
               D N  
Sbjct: 324 TLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 9/132 (6%)

Query: 152 HVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL-GLPKLKFLDLRYNEFEGKI 210
            ++   +  T+  +      L  L +++       PY+ +  L  L+FL+L YN     I
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TI 263

Query: 211 PKALFD--KDLDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRT 266
             ++      L  + +   + +  +      G + + VL ++ N+        F ++   
Sbjct: 264 EGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN- 321

Query: 267 LNEVILTNNGLH 278
           L  +IL +N L 
Sbjct: 322 LETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 264 SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHN 323
           S     V+       + +PE  G+     + D+  N++     D  A    L++L +  N
Sbjct: 10  SAQDRAVLCHRKRFVA-VPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 324 MLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           ++S   P +  +L NLR      N   
Sbjct: 67  IVSAVEPGAFNNLFNLRTLGLRSNRLK 93

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 32/247 (12%), Positives = 79/247 (31%), Gaps = 23/247 (9%)

Query: 127 IDLNHGDIASYLPEE-LGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGK 185
           + + + +  S +       L  +    +          +S   ++ +  L L  +  A  
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 186 FPYVVLGLPKLKFLDLRYNE----FEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP 241
                  L  +++L+LR           +P       +  +    +  + E  + +    
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVI---------------LTNNGLHSCLPEEIG 286
             +L L+  +F  C     G+ + + ++V+               +    L   L     
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 287 LLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDS---VCSLPNLRNFS 343
           LL+ V    V  +K+          + SL+ L+++ N++      +     + P+L+   
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367

Query: 344 FDYNFFT 350
              N   
Sbjct: 368 LSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 9/229 (3%)

Query: 172 LFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRF 229
           +  LDLS N+        +     L+ L L+ +     I    F     L+ + +++N  
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL 86

Query: 230 SFELPDNIGNSP-VSVLVLANNKFHGCLPLS--FGNMSRTLNEVILTNNGLHSCLPEE-I 285
           S       G    +  L L  N +   L ++  F N++  L  + + N    S +     
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTN-LQTLRIGNVETFSEIRRIDF 144

Query: 286 GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFD 345
             L ++   ++    L      ++  +  +  L +  +  +  +      L ++R     
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELR 204

Query: 346 YNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRLVYCNTL 394
                      L +         L  +    +       L  L Y   L
Sbjct: 205 DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 31/196 (15%), Positives = 60/196 (30%), Gaps = 13/196 (6%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK----- 217
             +F  L  L  LDLS+N  +         L  LK+L+L  N ++     +LF       
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 218 --DLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN 274
              +     N   FS     +      ++ L +           S  ++ R ++ + L  
Sbjct: 127 TLRIG----NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI-RDIHHLTLHL 181

Query: 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334
           +     L     +L +V   ++    L       +        +       S    +S  
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241

Query: 335 SLPNLRNFSFDYNFFT 350
            L  L  +  + +   
Sbjct: 242 ELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 51/263 (19%), Positives = 88/263 (33%), Gaps = 22/263 (8%)

Query: 93  WNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFH 152
            + T N +G +  + + V     L      T+  + +    +   L     LL  +    
Sbjct: 259 DDCTLNGLGDFNPSESDVV--SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 153 VNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF---PYVVLGLPKLKFLDLRYNEFEGK 209
           V  ++           LK L  LDLS N    ++          P L+ L L  N     
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-S 375

Query: 210 IPKA--LFDK--DLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMS 264
           + K   +     +L ++ I+ N F   +PD+      +  L L++               
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT-- 432

Query: 265 RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNM 324
             L  + ++NN L S        L  +    +S NKL   LPD  +    L  + ++ N 
Sbjct: 433 --LEVLDVSNNNLDS-FSLF---LPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQ 484

Query: 325 LSGTVPDSVCSLPNLRNFSFDYN 347
           L          L +L+      N
Sbjct: 485 LKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 35/259 (13%), Positives = 79/259 (30%), Gaps = 26/259 (10%)

Query: 127 IDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF 186
           +++    + +Y  + L  + DI    ++ +     L    + L  +  L+L +   A   
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 187 PYVVLGLP---KLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFS------------- 230
              +        +K L  R +    +    L       + ++   F              
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 231 ----FELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIG 286
                     +    +  L +        L   +  + + +  + + N+ +         
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK-VKRITVENSKVFLVPCSFSQ 331

Query: 287 LLKNVTVFDVSYNKLMGELPDT---IAEMTSLQQLNVAHNMLS--GTVPDSVCSLPNLRN 341
            LK++   D+S N ++ E            SLQ L ++ N L       + + +L NL +
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 342 FSFDYNFFTGESPVCLDLQ 360
                N F      C   +
Sbjct: 392 LDISRNTFHPMPDSCQWPE 410

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 14/180 (7%)

Query: 127 IDLNH---GDIASYLPEELGLLADIALFHVNTNRF--CGTLPRSFNKLKLLFELDLSNNR 181
           +DL+     +         G    +    ++ N              LK L  LD+S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP 241
           F    P       K++FL+L        +   +    L+ + ++NN         +    
Sbjct: 399 F-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT-LEVLDVSNNNLD-SFSLFLPR-- 452

Query: 242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKL 301
           +  L ++ NK      L   ++   L  + ++ N L S        L ++    +  N  
Sbjct: 453 LQELYISRNKLKT---LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 32/190 (16%), Positives = 67/190 (35%), Gaps = 12/190 (6%)

Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFE 232
            D  +  F    P  +     +K LDL +N+    I         +L  + + ++R +  
Sbjct: 10  CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN-T 64

Query: 233 LPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS-CLPEEIGLLK 289
           +  +       +  L L++N         FG +S  L  + L  N   +  +      L 
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS-LKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 290 NVTVFDVSYNKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF 348
           N+    +   +   E+     A +TSL +L +    L      S+ S+ ++ + +   + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 349 FTGESPVCLD 358
                 +  D
Sbjct: 184 SAFLLEIFAD 193

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 12/136 (8%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           N F   +P S    + +  L+LS+         +      L+ LD+  N  +      L 
Sbjct: 397 NTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLD-SFSLFLP 451

Query: 216 D-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN 274
             ++L    I+ N+    LPD      + V+ ++ N+        F  ++  L ++ L  
Sbjct: 452 RLQELY---ISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTS-LQKIWLHT 506

Query: 275 NGLHSCLPEEIGLLKN 290
           N    C    I  L  
Sbjct: 507 NPWD-CSCPRIDYLSR 521

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 41/189 (21%), Positives = 87/189 (46%), Gaps = 11/189 (5%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV 222
              F  LK L  L L NN+ +   P     L KL+ L L  N+ + ++P+ +  K L  +
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-KTLQEL 126

Query: 223 FINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCL--PLSFGNMSRTLNEVILTNNGLH 278
            ++ N  + ++  ++  G + + V+ L  N          +F  M + L+ + + +  + 
Sbjct: 127 RVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIADTNIT 184

Query: 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN 338
           + +P+  GL  ++T   +  NK+      ++  + +L +L ++ N +S     S+ + P+
Sbjct: 185 T-IPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 339 LRNFSFDYN 347
           LR    + N
Sbjct: 242 LRELHLNNN 250

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 6e-11
 Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 17/187 (9%)

Query: 172 LFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF-EGKIPKALFD--KDLDAVFINNNR 228
           L EL +  N        V  GL ++  ++L  N      I    F   K L  + I +  
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 229 FSFELPDNIGNSPVS--VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIG 286
            +  +P  +   P S   L L  NK       S   ++  L ++ L+ N + +     + 
Sbjct: 183 IT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSFNSISAVDNGSLA 237

Query: 287 LLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC------SLPNLR 340
              ++    ++ NKL+ ++P  +A+   +Q + + +N +S    +  C         +  
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

Query: 341 NFSFDYN 347
             S   N
Sbjct: 297 GVSLFSN 303

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 21/174 (12%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLP-KLKFLDLRYNEFEGKIPKALFD--KDL 219
             +F  +K L  + +++         +  GLP  L  L L  N+   K+  A      +L
Sbjct: 164 NGAFQGMKKLSYIRIADTNIT----TIPQGLPPSLTELHLDGNKIT-KVDAASLKGLNNL 218

Query: 220 DAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277
             + ++ N  S  + +        +  L L NNK    +P    +    +  V L NN +
Sbjct: 219 AKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY-IQVVYLHNNNI 275

Query: 278 HS------CLPEEIGLLKNVTVFDVSYNKL-MGEL-PDTIAEMTSLQQLNVAHN 323
            +      C P       + +   +  N +   E+ P T   +     + + + 
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKD---- 218
             S      L EL L+NN+   K P  +     ++ + L  N     I    F       
Sbjct: 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNT 290

Query: 219 ----LDAVFINNNRFSF-ELPDNI--GNSPVSVLVLANNK 251
                  V + +N   + E+  +        + + L N K
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 18/194 (9%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK----- 217
             +FN L  L  L+L +NR         + L KLK L LR N  E  IP   F++     
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLR 163

Query: 218 --DLDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
             DL        R S  + +    G S +  L LA       +P +   + + L+E+ L+
Sbjct: 164 RLDLG----ELKRLS-YISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIK-LDELDLS 215

Query: 274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
            N L +  P     L ++    +  +++     +    + SL ++N+AHN L+    D  
Sbjct: 216 GNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLF 275

Query: 334 CSLPNLRNFSFDYN 347
             L +L      +N
Sbjct: 276 TPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 33/166 (19%), Positives = 64/166 (38%), Gaps = 6/166 (3%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL-RYNEFEGKIPKALFDK--DL 219
             +F  L  L EL L NN       Y    +P L+ LDL         I +  F+   +L
Sbjct: 129 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNL 187

Query: 220 DAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279
             + +       E+P+      +  L L+ N      P SF  +   L ++ +  + +  
Sbjct: 188 RYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH-LQKLWMIQSQIQV 245

Query: 280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML 325
                   L+++   ++++N L     D    +  L+++++ HN  
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.0 bits (165), Expect = 4e-12
 Identities = 57/379 (15%), Positives = 122/379 (32%), Gaps = 82/379 (21%)

Query: 1   MRPKINIILPLF-------AILTLITLVTAEKLSVSNNGVF------LEAEAAFIKQRQL 47
           +RP  N+++            + L   ++ +     +  +F        +    ++  Q 
Sbjct: 147 LRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 48  LYYRNR--YGGRGEFG-RIPPSFKFENSRIRSAYIALQAWKKA--IISDPWNLTSNW--- 99
           L Y+    +  R +    I        + +R   +  + ++    ++ +  N    W   
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-LLKSKPYENCLLVLLNVQN-AKAWNAF 262

Query: 100 -VGCYV---CNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNT 155
            + C +     +  V      D  S  T   I L+H  +     E   LL       ++ 
Sbjct: 263 NLSCKILLTTRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKY----LDC 313

Query: 156 NRFCGTLPR---SFNKLKL-LFELDLSN--NRFAGKFPYVVLGLPKL-KFLDLRYNEFEG 208
                 LPR   + N  +L +    + +    +   + +V     KL   ++   N  E 
Sbjct: 314 R--PQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWKHV--NCDKLTTIIESSLNVLEP 368

Query: 209 KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLN 268
              + +F   L +VF          P +  + P  +L L            + ++ ++  
Sbjct: 369 AEYRKMF-DRL-SVF----------PPSA-HIPTILLSLI-----------WFDVIKSDV 404

Query: 269 EVILTNNGLHS-CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327
            V++  N LH   L     + K      +S   +  EL   +    +L +  V H  +  
Sbjct: 405 MVVV--NKLHKYSL-----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457

Query: 328 TVPDSVCSLPNLRNFSFDY 346
           T        P L  + + +
Sbjct: 458 TFDSDDLIPPYLDQYFYSH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 42/249 (16%), Positives = 89/249 (35%), Gaps = 33/249 (13%)

Query: 106 NYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRS 165
                F        S++ ++   +              + +++ + +   +         
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 166 FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKA--LFDK--DLDA 221
            +K+     LD SNN            L +L+ L L+ N+ + ++ K   +  +   L  
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQ 378

Query: 222 VFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL 281
           + I+ N  S++      +   S                       L  + +++N L   +
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKS-----------------------LLSLNMSSNILTDTI 415

Query: 282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC-SLPNLR 340
                L   + V D+  NK+   +P  + ++ +LQ+LNVA N L  +VPD +   L +L+
Sbjct: 416 FR--CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471

Query: 341 NFSFDYNFF 349
                 N +
Sbjct: 472 KIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 14/206 (6%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSF 231
            L++S N  +  +   +L L KL+ L + +N  +  +  ++F    +L+ + +++N+   
Sbjct: 25  ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV- 82

Query: 232 ELP-DNIGNSPVSVLVLANNKFHGCLPLS--FGNMSRTLNEVILTNNGLHSCLPEEIGLL 288
           ++      N  +  L L+ N F   LP+   FGNMS+ L  + L+   L       I  L
Sbjct: 83  KISCHPTVN--LKHLDLSFNAFD-ALPICKEFGNMSQ-LKFLGLSTTHLEKSSVLPIAHL 138

Query: 289 KNVTVFDVSYNKLMGELP---DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFD 345
               V  V       +            SL  +   +      +  SV ++ NL   +  
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 346 YNFFTGESPVCLDLQGFDDKRNCLRD 371
                 +    L +         L +
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSN 224

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 22/222 (9%)

Query: 138 LPEELGLLADIALFHVNTNR-----FCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLG 192
             E+   L D     ++        F   L  S   +  L   ++       K  Y +  
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 193 LPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKF 252
           L KL+                L +  L+ +    N F   +   + ++ V    ++N K 
Sbjct: 213 LAKLQTNP------------KLSNLTLNNIETTWNSF-IRILQLVWHTTVWYFSISNVKL 259

Query: 253 HGCLPLSFGNMS----RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDT 308
            G L     + S    + L+   + ++           +  N+ + + + +         
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 309 IAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
            ++++    L+ ++N+L+ TV ++   L  L       N   
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 38/220 (17%), Positives = 78/220 (35%), Gaps = 8/220 (3%)

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
           +++   I+     ++  L+ + +  ++ NR        F   + L  LDLS+N+   K  
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KIS 85

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSFELPDNIGNSPVS-- 243
                   LK LDL +N F+       F     L  + ++           I +  +S  
Sbjct: 86  C--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 244 VLVLANNKFHGCLPLSFGN-MSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLM 302
           +LVL         P    +  + +L+ V  TN   H  L   +  + N+ + ++      
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 303 GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNF 342
            +    ++ +  LQ      N+    +  +  S   +   
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 6e-12
 Identities = 45/210 (21%), Positives = 78/210 (37%), Gaps = 8/210 (3%)

Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
           G+ A      ++ NR       SF   + L  L L +N  A        GL  L+ LDL 
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 203 YNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPL 258
            N     +  A F     L  + ++      EL   +  G + +  L L +N        
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 259 SFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQ 317
           +F ++   L  + L  N + S +PE     L ++    +  N++    P    ++  L  
Sbjct: 148 TFRDLGN-LTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 318 LNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           L +  N LS    +++  L  L+    + N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.3 bits (159), Expect = 8e-12
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 20/198 (10%)

Query: 172 LFELDLSNNRFAGKFPY---VVLGLPKLKFLDLRYNEFEGKIPKALFD---KDLDAVFIN 225
           L  L +   R   +  +    VLG+  L+ L L   E  G  P  L +    DL+ + + 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 226 NNRFSFELPD-----NIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL--- 277
           N  ++                + VL +A              +   L+ + L++N     
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLDLSDNPELGE 188

Query: 278 ----HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
                +  P +   L+ + + +       G      A    LQ L+++HN L        
Sbjct: 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248

Query: 334 CSLP-NLRNFSFDYNFFT 350
           C  P  L + +  +    
Sbjct: 249 CDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 35/177 (19%), Positives = 54/177 (30%), Gaps = 30/177 (16%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP----YVVLGLPKLKFLDLRYNEFEGKIP 211
                           L  LDLS+N   G+         L  P L+ L LR         
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM----- 213

Query: 212 KALFDKDLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEV 270
                             S            +  L L++N           +    LN +
Sbjct: 214 ---------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258

Query: 271 ILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327
            L+  GL   +P+  GL   ++V D+SYN+L    P    E+  +  L++  N    
Sbjct: 259 NLSFTGLKQ-VPK--GLPAKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 46/232 (19%), Positives = 68/232 (29%), Gaps = 37/232 (15%)

Query: 155 TNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGL--PKLKFLDLRYNEFEGKIP- 211
            +R      R      L  EL L N    G  P  +L    P L  L+LR   +  +   
Sbjct: 81  PSRILFGALRVLGISGLQ-ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW 139

Query: 212 ----KALFDKDLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLS---FGNM 263
               +      L  + I          + +   P +S L L++N   G   L        
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 264 SRTLNEVILTNNGLHS---CLPEEIGLLKNVTVFDVSYNKLMGELPDTI-AEMTSLQQLN 319
             TL  + L N G+ +              +   D+S+N L            + L  LN
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 320 VAHNMLSGTVPD--------------------SVCSLPNLRNFSFDYNFFTG 351
           ++   L   VP                     S   LP + N S   N F  
Sbjct: 260 LSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 134 IASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVV-LG 192
           I++  P +   L  +AL +       G           L  LDLS+N             
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 193 LPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKF 252
             +L  L+L +   + ++PK L  K L  + ++ NR     P       V  L L  N F
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLPAK-LSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPF 308

Query: 253 HG 254
             
Sbjct: 309 LD 310

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.8 bits (157), Expect = 2e-11
 Identities = 55/353 (15%), Positives = 99/353 (28%), Gaps = 32/353 (9%)

Query: 38  EAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENSRIRSAYIALQAWKKAIISDPWNLTS 97
           ++A+   R LL     +                    R   +  +     ++ D   L+ 
Sbjct: 226 QSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSV 285

Query: 98  NWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNR 157
            W      N         L   S+      D         +        +  L       
Sbjct: 286 EWRTPDGRNRPSHVWLCDLPAASLN-----DQLPQHTFRVIWTGSDSQKECVLLKDRPE- 339

Query: 158 FCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK 217
                 R     + LF  +LS  +        +    +L+ L+         I   +   
Sbjct: 340 ---CWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRAL 395

Query: 218 DLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277
           D         ++   L   +     + L    +KF     +     +     + L +  L
Sbjct: 396 DPLLYEKETLQYFSTL-KAVDPMRAAYLDDLRSKFLLENSVLKMEYADV-RVLHLAHKDL 453

Query: 278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP 337
                  +  L  VT  D+S+N+L   LP  +A +  L+ L  + N L     D V +LP
Sbjct: 454 TV--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL--ENVDGVANLP 508

Query: 338 NLRNFSFDYNFFTGESPV----------CLDLQGFDDKRNCLRDKPRQRSTLQ 380
            L+      N     + +           L+LQG     N L  +   +  L 
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG-----NSLCQEEGIQERLA 556

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 43/194 (22%), Positives = 69/194 (35%), Gaps = 18/194 (9%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK----- 217
             +FN L  L  L+L +N            L KL+ L LR N  E  IP   F++     
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLM 174

Query: 218 --DLDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
             DL        +    + +    G   +  L L        +P +   +   L E+ ++
Sbjct: 175 RLDLG----ELKKLE-YISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVG-LEELEMS 226

Query: 274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
            N      P     L ++    V  +++     +    + SL +LN+AHN LS    D  
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLF 286

Query: 334 CSLPNLRNFSFDYN 347
             L  L      +N
Sbjct: 287 TPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.0 bits (156), Expect = 4e-11
 Identities = 40/213 (18%), Positives = 75/213 (35%), Gaps = 10/213 (4%)

Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
           G+ ++    ++  N        +F  L  L  L L  N           GL  L  L+L 
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 203 YNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNI--GNSPVSVLVLA-NNKFHGCLP 257
            N     IP   F+    L  +++ NN     +P         +  L L    K      
Sbjct: 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQ 317
            +F  +   L  + L    +   +P     L  +   ++S N      P +   ++SL++
Sbjct: 190 GAFEGLFN-LKYLNLGMCNIKD-MPNLTP-LVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246

Query: 318 LNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           L V ++ +S    ++   L +L   +  +N  +
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 6/166 (3%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL-RYNEFEGKIPKALFD--KDL 219
             +F  L  L EL L NN       Y    +P L  LDL    + E  I +  F+   +L
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNL 198

Query: 220 DAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279
             + +       ++P+      +  L ++ N F    P SF  +S  L ++ + N+ +  
Sbjct: 199 KYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS-LKKLWVMNSQVSL 256

Query: 280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNML 325
                   L ++   ++++N L     D    +  L +L++ HN  
Sbjct: 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 11/192 (5%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLD 220
            +S      L  LDLS N          LGL +L+ LD +++  +     ++F    +L 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 221 AVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCL-PLSFGNMSRTLNEVILTNNGL 277
            + I++        + I  G S + VL +A N F     P  F  +   L  + L+   L
Sbjct: 130 YLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN-LTFLDLSQCQL 187

Query: 278 HSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL 336
              L       L ++ V ++S+N            + SLQ L+ + N +  +    +   
Sbjct: 188 EQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 337 P-NLRNFSFDYN 347
           P +L   +   N
Sbjct: 247 PSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 42/215 (19%), Positives = 82/215 (38%), Gaps = 10/215 (4%)

Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF--PYVVLGLPKLKFLD 200
           G+ +      + +N+        F+KL  L +L LS+N  + K        G   LK+LD
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDN---IGNSPVSVLVLANNKFHGCL 256
           L +N     +       + L+ +   ++    ++ +    +    +  L +++       
Sbjct: 85  LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 257 PLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSL 315
              F  +S  L  + +  N        +I   L+N+T  D+S  +L    P     ++SL
Sbjct: 143 NGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 316 QQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           Q LN++HN            L +L+   +  N   
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 33/185 (17%), Positives = 68/185 (36%), Gaps = 14/185 (7%)

Query: 172 LFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF-EGKIPKALFDK-DLDAVFINNNRF 229
           L EL + +NR       V  GL  +  +++  N           FD   L+ + I+  + 
Sbjct: 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

Query: 230 SFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLL 288
           +  +P ++  + ++ L L +NK            S+ L  + L +N +   +       L
Sbjct: 185 T-GIPKDLPET-LNELHLDHNKIQAIELEDLLRYSK-LYRLGLGHNQI-RMIENGSLSFL 240

Query: 289 KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL------PNLRNF 342
             +    +  NKL   +P  + ++  LQ + +  N ++    +  C +            
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI 299

Query: 343 SFDYN 347
           S   N
Sbjct: 300 SLFNN 304

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 38/193 (19%), Positives = 82/193 (42%), Gaps = 15/193 (7%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPK-LKFLDLRYNEFEGKIPKALFD--KDL 219
            ++F+ L+ L +L +S N        +   LP  L  L +  N    K+PK +F   +++
Sbjct: 95  EKAFSPLRKLQKLYISKNHLV----EIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNM 149

Query: 220 DAVFINNNRF-SFELPDNI-GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL 277
           + + +  N   +            ++ L ++  K  G           TLNE+ L +N +
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKI 205

Query: 278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP 337
            +   E++     +    + +N++      +++ + +L++L++ +N LS  VP  +  L 
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 338 NLRNFSFDYNFFT 350
            L+      N  T
Sbjct: 265 LLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD------ 216
             S + L  L EL L NN+ + + P  +  L  L+ + L  N    K+    F       
Sbjct: 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGV 291

Query: 217 --KDLDAVFINNNRFSF-ELPDNI--GNSPVSVLVLANNK 251
                + + + NN   + E+        +    +   N K
Sbjct: 292 KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 45/242 (18%), Positives = 81/242 (33%), Gaps = 19/242 (7%)

Query: 144 LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL-GLPKLKFLDLR 202
           L A +    ++ N        SF++L+ L  L +               GL  L  L L 
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87

Query: 203 YNEFEGKIPKALFDK--DLDAVFINNNRF-SFELPDNI--GNSPVSVLVLANNKFHGCLP 257
           YN+F  ++    F+   +L+ + +         L  N     + + +LVL +N      P
Sbjct: 88  YNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146

Query: 258 LSFGNMSRTLNEVILTNNGLHSCLPEEI--GL---------LKNVTVFDVSYNKLMGELP 306
            SF    R  + + LT N +   + EE              L ++T+ D++   L  E  
Sbjct: 147 ASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 307 DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKR 366
               + TS+  L+++ N    ++                    +           F D  
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265

Query: 367 NC 368
           N 
Sbjct: 266 NF 267

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 24/223 (10%)

Query: 145 LADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVV---LGLPKLKFLDL 201
           L+ I L  +N          +  K   +  LDLS N F           +   K++ L L
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 202 RYNEFEG---------KIPKALFDK----DLDAVFINNNRFSFELPDNI--GNSPVSVLV 246
             +   G               F       +    ++ ++    L  ++    + +  L 
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT 305

Query: 247 LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGEL 305
           LA N+ +     +F  ++  L ++ L+ N L S +   +   L  + V D+SYN +    
Sbjct: 306 LAQNEINKIDDNAFWGLTH-LLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALG 363

Query: 306 PDTIAEMTSLQQLNVAHNMLSGTVPDSV-CSLPNLRNFSFDYN 347
             +   + +L++L +  N L  +VPD +   L +L+      N
Sbjct: 364 DQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 29/211 (13%), Positives = 70/211 (33%), Gaps = 32/211 (15%)

Query: 166 FNKLKLLFELDLSNNRFA----------GKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           F  ++    LDL+ N+                + +L L  +   D+       +     F
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 216 D-KDLDAVFINNNRFSFELPDNI--------------GNSPVSVLVLANNKFHGCLPLSF 260
               +  + ++ N F   +                   NS        +  F      +F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 261 GNMSRT-LNEVILTNNGLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTI-AEMTSLQQ 317
             +  + +    L+ + + + L + +     ++    ++ N++  ++ D     +T L +
Sbjct: 270 KGLEASGVKTCDLSKSKIFA-LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327

Query: 318 LNVAHNMLSGTVPDSVC-SLPNLRNFSFDYN 347
           LN++ N L  ++   +  +L  L      YN
Sbjct: 328 LNLSQNFLG-SIDSRMFENLDKLEVLDLSYN 357

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 34/197 (17%), Positives = 66/197 (33%), Gaps = 14/197 (7%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLD 220
             SF+ L  L  LDLS N  +         L  L FL+L  N ++     +LF     L 
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 221 AVFINNNRFSFELPDNIGNSPVS--VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278
            + + N     ++             L +  +      P S  ++   ++ +IL      
Sbjct: 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQN-VSHLILHMKQHI 211

Query: 279 SCLPEEIGLLKNVTVFDVSYNKL----MGELP----DTIAEMTSLQQLNVAHNMLSGTVP 330
             L   + +  +V   ++    L      EL     +++ +  + + + +    L   V 
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVM 270

Query: 331 DSVCSLPNLRNFSFDYN 347
             +  +  L    F  N
Sbjct: 271 KLLNQISGLLELEFSRN 287

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 27/199 (13%), Positives = 59/199 (29%), Gaps = 30/199 (15%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLD 220
            + F  L  L EL++  +      P  +  +  +  L L   +    + +   D    ++
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE 225

Query: 221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC 280
            + + +                 +     N               T   V +T+  L   
Sbjct: 226 CLELRDTDLD-------TFHFSELSTGETNSLIKKF---------TFRNVKITDESLFQ- 268

Query: 281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS---LP 337
           + + +  +  +   + S N+L          +TSLQ++ +  N          CS   + 
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW-------DCSCPRID 321

Query: 338 NLRNFSFDYNFFTGESPVC 356
            L  +    +     S  C
Sbjct: 322 YLSRWLNKNSQKEQGSAKC 340

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 38/222 (17%), Positives = 74/222 (33%), Gaps = 17/222 (7%)

Query: 143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR 202
           GL   +    ++ NR          +   L  L L++N            L  L+ LDL 
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 203 YNEFEGKIPKALFDK--DLDAVFINNNRFSFELPDNIGNSPVSVL----VLANNKFHGCL 256
           YN     +  + F     L  + +  N +   L +    S ++ L    V   + F    
Sbjct: 109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 257 PLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQ 316
              F  ++  L E+ +  + L S  P+ +  ++NV+   +   + +  L   +   +S++
Sbjct: 167 RKDFAGLTF-LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 317 QLNVAHNMLSGT--------VPDSVCSLPNLRNFSFDYNFFT 350
            L +    L             +S+      RN         
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 3e-10
 Identities = 36/186 (19%), Positives = 62/186 (33%), Gaps = 19/186 (10%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
               L  L  L+   N+   K    V   P L +L+   N    +I  +   + L  +  
Sbjct: 101 DVTPLTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNTLT-EIDVSHNTQ-LTELDC 155

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
           + N+      D    + ++ L  + NK      L        LN +    N +   L   
Sbjct: 156 HLNKKI-TKLDVTPQTQLTTLDCSFNKITE---LDVSQNKL-LNRLNCDTNNITK-LD-- 207

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +     +T  D S NKL  E+   +  +T L   + + N L+  +  S  +L  L     
Sbjct: 208 LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHC 261

Query: 345 DYNFFT 350
                 
Sbjct: 262 IQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 19/186 (10%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
             ++ KLL  L+   N    K    +    +L FLD   N+   +I      + L     
Sbjct: 186 DVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVTPLTQ-LTYFDC 240

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
           + N  + EL  +   S ++ L          + L+                 +      +
Sbjct: 241 SVNPLT-ELDVS-TLSKLTTLHCIQTDLL-EIDLTHNTQLIYFQ--AEGCRKIKE---LD 292

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +     + + D     +  EL   +++   L  L + +  L+  +   V     L++ S 
Sbjct: 293 VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSC 346

Query: 345 DYNFFT 350
                 
Sbjct: 347 VNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 31/195 (15%), Positives = 65/195 (33%), Gaps = 18/195 (9%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
             N+   L  LD S+N+   +    V  L +L + D   N    ++  +   K L  +  
Sbjct: 207 DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLT-ELDVSTLSK-LTTLHC 261

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
                  E+ D   N+ +        +    L ++  + ++ L  +     G+      +
Sbjct: 262 IQTDLL-EI-DLTHNTQLIYFQAEGCRKIKELDVT--HNTQ-LYLLDCQAAGITE---LD 313

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +     +    ++  +L  EL   ++  T L+ L+  +  +      SV  +P L N   
Sbjct: 314 LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFE 368

Query: 345 DYNFFTGESPVCLDL 359
                       L  
Sbjct: 369 AEGQTITMPKETLTN 383

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 33/185 (17%), Positives = 66/185 (35%), Gaps = 19/185 (10%)

Query: 166 FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN 225
             KL  L +L  ++N         +     L +L    N+        L    L  +  +
Sbjct: 60  IEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTNLDVTPL--TKLTYLNCD 114

Query: 226 NNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI 285
            N+ + +L  +  N  ++ L  A N       +   + ++ L E+    N   +    ++
Sbjct: 115 TNKLT-KLDVS-QNPLLTYLNCARNTLT---EIDVSHNTQ-LTELDCHLNKKIT--KLDV 166

Query: 286 GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFD 345
                +T  D S+NK+  EL   +++   L +LN   N ++  +   +     L      
Sbjct: 167 TPQTQLTTLDCSFNKI-TELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCS 220

Query: 346 YNFFT 350
            N  T
Sbjct: 221 SNKLT 225

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 18/183 (9%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
           S  +L  L  LD  N+         +  L  L  L    N             +L  +  
Sbjct: 37  SEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLDLSQN--TNLTYLAC 92

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
           ++N+ +  L      + ++ L    NK      L        L  +    N L      +
Sbjct: 93  DSNKLT-NLDVT-PLTKLTYLNCDTNKLT---KLDVSQNPL-LTYLNCARNTLTEI---D 143

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +     +T  D   NK + +L   +   T L  L+ + N ++      V     L   + 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 345 DYN 347
           D N
Sbjct: 199 DTN 201

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
               +     + +        L  +T  D   + +  ++   I ++T L +L    N ++
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI-TDMTG-IEKLTGLTKLICTSNNIT 77

Query: 327 GTVPDSVCSLPNLRNFSFDYNFFT 350
                 +    NL   + D N  T
Sbjct: 78  TL---DLSQNTNLTYLACDSNKLT 98

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 37/199 (18%), Positives = 66/199 (33%), Gaps = 23/199 (11%)

Query: 163 PRSFNKLKLLFELDLSNNRF----AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK- 217
             SF     L  LDLS         G +      L  L  L L  N  +  +    F   
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQ-SLALGAFSGL 99

Query: 218 -DLDAVFINNNRFSFELPDNIGNSPVS--VLVLANNKFHGCLPLS--FGNMSRTLNEVIL 272
             L  +       +  L +       +   L +A+N       L   F N++  L  + L
Sbjct: 100 SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTN-LEHLDL 156

Query: 273 TNNGLHSCLPEEIGLLKNVTVF----DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT 328
           ++N + S    ++ +L  + +     D+S N +   +     +   L++L +  N L   
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSV 215

Query: 329 VPDSVCSLPNLRNFSFDYN 347
                  L +L+      N
Sbjct: 216 PDGIFDRLTSLQKIWLHTN 234

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 6/102 (5%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
             +   P  ++ PP  P   P P P  +P PP         P +         P P P  
Sbjct: 41  TPADLEPPQAVQPPPEPVVEPEPEPEPIPEPP------KEAPVVIEKPKPKPKPKPKPVK 94

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
           ++Q  P     P E +P        P    ++        P+
Sbjct: 95  KVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPV 136

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 400 PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQ 459
           P+    S+   +  P P  P+ V++  P         PP    P P P++ P P    + 
Sbjct: 15  PRGSHMSVHQVIELPAPAQPISVTMVTPAD-----LEPPQAVQPPPEPVVEPEPEPEPIP 69

Query: 460 PLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             P  +P+  EK  P   P   P+  +   P     P 
Sbjct: 70  EPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPV 107

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 18/101 (17%), Positives = 22/101 (21%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           Q      V            PPP PV  P P    I  P              P P P  
Sbjct: 33  QPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP 92

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             +    P       +  P+ P     P+            
Sbjct: 93  VKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATS 133

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 19/101 (18%), Positives = 28/101 (27%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
               + P  + P  V    P    P     PP   +  P P P   P P    P      
Sbjct: 23  HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
           + +P P P P+   ++ P            +      P   
Sbjct: 83  KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARL 123

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 28/113 (24%), Positives = 37/113 (32%), Gaps = 5/113 (4%)

Query: 385 LSRLVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPT 444
           + R  + +  +    P P        V P    PP  V  PP P        P P   P 
Sbjct: 14  VPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPV-----VEPEPEPEPI 68

Query: 445 PTPILPPPPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
           P P    P    + +P P P P P +K          P+ S  A P+    P 
Sbjct: 69  PEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 18/102 (17%), Positives = 26/102 (25%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
            P P     P P   P P PP    +          P+P P+      P     P   R 
Sbjct: 52  QPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRP 111

Query: 459 QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY 500
                 +          +     P+ S+ + P         Y
Sbjct: 112 ASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQY 153

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 17/97 (17%), Positives = 22/97 (22%), Gaps = 3/97 (3%)

Query: 400 PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQ 459
              P         P P P P P    P     I  P+P P   P P   +   P      
Sbjct: 50  AVQPPPEPVVEPEPEPEPIPEPPKEAPVV---IEKPKPKPKPKPKPVKKVQEQPKRDVKP 106

Query: 460 PLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPP 496
               P+       P           +   +      P
Sbjct: 107 VESRPASPFENTAPARLTSSTATAATSKPVTSVASGP 143

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 18/98 (18%), Positives = 21/98 (21%), Gaps = 6/98 (6%)

Query: 400 PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQ 459
           P+P     PP   P     P P   P P       P       P          P    +
Sbjct: 63  PEPEPIPEPPKEAPVVIEKPKPKPKPKPK------PVKKVQEQPKRDVKPVESRPASPFE 116

Query: 460 PLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              P            S P         A+    P  P
Sbjct: 117 NTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYP 154

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 45.9 bits (108), Expect = 1e-05
 Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 9/99 (9%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           +  P+PP  +     +P P P P P  +           +P     P  +    P     
Sbjct: 66  EPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ------EQPKRDVKPVESRPASPFENTA 119

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPP 495
             +     +         P         +++     YP 
Sbjct: 120 PARLTSSTATAA---TSKPVTSVASGPRALSRNQPQYPA 155

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 17/112 (15%), Positives = 46/112 (41%), Gaps = 4/112 (3%)

Query: 244 VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303
            L + N       P+S   +S  L  + +    + S     +  L ++T+ D+S++    
Sbjct: 70  DLTINNIHATNYNPIS--GLSN-LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 304 ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV 355
            +   I  +  +  +++++N    T    + +LP L++ +  ++       +
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAI-TDIMPLKTLPELKSLNIQFDGVHDYRGI 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 22/168 (13%), Positives = 60/168 (35%), Gaps = 16/168 (9%)

Query: 165 SFNKLKLLFELDLSNNR---FAGKFPYVVLGLPKLKFLDLRYNEFEGKIP-KALFDKDLD 220
           +  ++  L  + L+N       G     +     +K L +         P   L   +L+
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG-----IEYAHNIKDLTINNIHATNYNPISGL--SNLE 91

Query: 221 AVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS 279
            + I     + +   N+     +++L ++++     +      + + +N + L+ NG  +
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK-VNSIDLSYNGAIT 150

Query: 280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG 327
            +   +  L  +   ++ ++ +       I +   L QL      + G
Sbjct: 151 DI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
           + ++ + N    +     I  L N+    +    +  +    ++ +TSL  L+++H+   
Sbjct: 68  IKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 327 GTVPDSVCSLPNLRNFSFDYN 347
            ++   + +LP + +    YN
Sbjct: 126 DSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 11/101 (10%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 257 PLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQ 316
            ++   M+ +L  + L N  +       I    N+    ++         + I+ +++L+
Sbjct: 37  NITEAQMN-SLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATN--YNPISGLSNLE 91

Query: 317 QLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
           +L +    ++     ++  L +L      ++         +
Sbjct: 92  RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.9 bits (129), Expect = 2e-08
 Identities = 21/80 (26%), Positives = 24/80 (30%), Gaps = 5/80 (6%)

Query: 400 PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQ 459
           PQ                   P   PP          PPP+    P P +  PPP +R  
Sbjct: 144 PQGRGTVAAAAAAATASIAGAPTQYPPGR-----GGPPPPMGRGAPPPGMMGPPPGMRPP 198

Query: 460 PLPPPSPIPCEKQPPPSPPP 479
             PP    P    P   PPP
Sbjct: 199 MGPPMGIPPGRGTPMGMPPP 218

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 20/101 (19%), Positives = 25/101 (24%), Gaps = 1/101 (0%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
                 +      V  P      P            +            P    PPP + 
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG 180

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
               PP    P     PP  PP G +P     P   PPP +
Sbjct: 181 RGAPPPGMMGPPPGMRPPMGPPMG-IPPGRGTPMGMPPPGM 220

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 46.2 bits (109), Expect = 7e-06
 Identities = 17/93 (18%), Positives = 21/93 (22%), Gaps = 4/93 (4%)

Query: 406 SLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPS 465
            +P P  P     PV     P          P    +                   PP  
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQ----QVMTPQGRGTVAAAAAAATASIAGAPTQYPPGR 172

Query: 466 PIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
             P       +PPP    P     P   PP  +
Sbjct: 173 GGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 46.2 bits (109), Expect = 9e-06
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 6/80 (7%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
            ++      +  P   PP    P P      P   +    PPP   P   P +  PP   
Sbjct: 153 AAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGM--MGPPPGMRPPMGPPMGIPPGRG 210

Query: 457 RLQPLPPPSPIPCEKQPPPS 476
               +PPP   P    PPP 
Sbjct: 211 TPMGMPPPGMRP----PPPG 226

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 19/90 (21%), Positives = 24/90 (26%), Gaps = 7/90 (7%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
            +       +       P   PP     PPP          PP     P P     PP  
Sbjct: 148 GTVAAAAAAATASIAGAPTQYPPGRGGPPPPMG-----RGAPPPGMMGPPP--GMRPPMG 200

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSI 486
               +PP    P    PP   PP   +  +
Sbjct: 201 PPMGIPPGRGTPMGMPPPGMRPPPPGMRGL 230

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 18/98 (18%), Positives = 23/98 (23%), Gaps = 4/98 (4%)

Query: 400 PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQ 459
              P+   P  +  P      P      P             +     I   P      +
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQG---RGTVAAAAAAATASIAGAPTQYPPGR 172

Query: 460 PLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             PPP        P    PP G  P +   P   PP  
Sbjct: 173 GGPPPPMGRGAPPPGMMGPPPGMRPPMGP-PMGIPPGR 209

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 20/106 (18%), Positives = 26/106 (24%), Gaps = 5/106 (4%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPR-----PPPLFSPTPTPILPP 451
              P       P   R      P  V +P  P       R        + +P     +  
Sbjct: 93  ARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAA 152

Query: 452 PPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                       P+  P  +  PP P   G  P     P P   PP
Sbjct: 153 AAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 11/101 (10%), Positives = 22/101 (21%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           +  P         P+      P +  +        +  P+ P   +     +  P    +
Sbjct: 83  EGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVM 142

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             Q     +          +  P    P     P P     
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGA 183

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 30/191 (15%), Positives = 65/191 (34%), Gaps = 13/191 (6%)

Query: 163 PRSFNKLKLLFELDLS-NNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DL 219
             +F+ L  +  + +S +        +    L K+  +++R       I      +   L
Sbjct: 48  SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107

Query: 220 DAVFINNNRFSFELPDNI---GNSPVSVLVLANNKFHGCLPL-SFGNMSRTLNEVILTNN 275
             + I N       PD           +L + +N +   +P+ +F  +      + L NN
Sbjct: 108 KFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELP-DTIAEMTS-LQQLNVAHNMLSGTVPDSV 333
           G  S +         +    ++ NK +  +  D    + S    L+V+   ++  +P   
Sbjct: 167 GFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

Query: 334 C-SLPNLRNFS 343
              L  L   +
Sbjct: 225 LEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/179 (11%), Positives = 52/179 (29%), Gaps = 29/179 (16%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFEL 233
            L L          +    LP +  + +  +    ++    F                  
Sbjct: 35  TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY----------------- 77

Query: 234 PDNIGNSPVSVLVLANNKFHGCLPLS-FGNMSRTLNEVILTNNGLHSCLPEE--IGLLKN 290
                 S V+ + + N +    +       +   L  + + N GL    P+   +     
Sbjct: 78  ----NLSKVTHIEIRNTRNLTYIDPDALKELPL-LKFLGIFNTGLKM-FPDLTKVYSTDI 131

Query: 291 VTVFDVSYNKLMGELP-DTIAEMTS-LQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
             + +++ N  M  +P +    + +    L + +N  + +V     +   L     + N
Sbjct: 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 34/188 (18%), Positives = 61/188 (32%), Gaps = 9/188 (4%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFP-YVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DL 219
             +F+    L ++++S N         V   LPKL  + +        I    F    +L
Sbjct: 47  KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL 106

Query: 220 DAVFINNNRFSFELPDNIGNSPVSVLVL---ANNKFHGCLPLSFGNMSRTLNEVILTNNG 276
             + I+N      LPD      +  ++L    N   H     SF  +S     + L  NG
Sbjct: 107 QYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG 165

Query: 277 LHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS 335
           +   +        +   +     N L     D     +    L+++   +       + +
Sbjct: 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224

Query: 336 LPNLRNFS 343
           L  LR  S
Sbjct: 225 LKKLRARS 232

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 31/238 (13%)

Query: 116 LDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFEL 175
               +++++    + +            + A++ +  ++ +                  L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358

Query: 176 DLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPD 235
           + + N F          L +L+ L L+ N            K+   V          +  
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGL----------KNFFKV--------ALMTK 400

Query: 236 NIGNSPVSVLVLANNKFHGCLPLSFGNM---SRTLNEVILTNNGLHSCLPEEIGLLKNVT 292
           N+ +     L   +   +     ++      + ++  + L++N L   +     L   V 
Sbjct: 401 NMSS-----LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR--CLPPKVK 453

Query: 293 VFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC-SLPNLRNFSFDYNFF 349
           V D+  N++M  +P  +  + +LQ+LNVA N L  +VPD V   L +L+      N +
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.7 bits (129), Expect = 8e-08
 Identities = 29/197 (14%), Positives = 60/197 (30%), Gaps = 11/197 (5%)

Query: 160 GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK-- 217
                S   LK L    + N  F      +     ++    L  ++    I         
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT-PFIHMVCPPSPS 353

Query: 218 DLDAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN-- 274
               +    N F+  +         +  L+L  N                 +   L    
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLDVSL 412

Query: 275 NGLHSCLPEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
           N L+S   +      +++ V ++S N L G +   +     ++ L++ +N +  ++P  V
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV 469

Query: 334 CSLPNLRNFSFDYNFFT 350
             L  L+  +   N   
Sbjct: 470 THLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 38/238 (15%), Positives = 77/238 (32%), Gaps = 20/238 (8%)

Query: 127 IDLNHGDIASYLPEELGLLADIAL---FHVNTNRFCGTLPRSFNKLKLL----FELDLSN 179
           +DL    I     E L +     L   FH N+  F   +  S N L  L     +L+  N
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL-FSVQVNMSVNALGHLQLSNIKLNDEN 234

Query: 180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGK----IPKALFDKDLDAVFINNNRFS----F 231
            +    F   +   P L  + L++ E   K    + +  + + ++ + I N   +     
Sbjct: 235 CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294

Query: 232 ELPDNIGNSPVSVLV--LANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLK 289
           E       +  S+++  + N  F       +   +  +N  +L+ +              
Sbjct: 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE-MNIKMLSISDTPFIHMVCPPSPS 353

Query: 290 NVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           + T  + + N     +    + +  LQ L +  N L            N+ +      
Sbjct: 354 SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDV 410

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 7e-05
 Identities = 25/196 (12%), Positives = 55/196 (28%), Gaps = 13/196 (6%)

Query: 168 KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNN 227
              +L  +   N+ F+ +    V  L  L+  +++ N+   +       +      + N 
Sbjct: 195 NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254

Query: 228 RFS---------FELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVI----LTN 274
                        +L       PV  L + N      +       S T  + +    + N
Sbjct: 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314

Query: 275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC 334
                       +   + +  +S +             +S   LN   N+ + +V     
Sbjct: 315 QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374

Query: 335 SLPNLRNFSFDYNFFT 350
           +L  L+      N   
Sbjct: 375 TLKRLQTLILQRNGLK 390

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 11/99 (11%), Positives = 18/99 (18%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
             Q        P++ P    P         +Y      P              P      
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 459 QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
           Q +   +    +      P           +P     P 
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 15/103 (14%), Positives = 20/103 (19%), Gaps = 2/103 (1%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHS--PRPPPLFSPTPTPILPPPPP 454
            +  Q P   +PP            + +PP              P        I      
Sbjct: 20  ATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTS 79

Query: 455 NLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              +     P   P     P  P   G        P   P   
Sbjct: 80  MNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 13/101 (12%), Positives = 17/101 (16%), Gaps = 1/101 (0%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
               Q       P    PP  P                  P        TP        +
Sbjct: 14  LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             Q     + +     P   P  Y        +  P     
Sbjct: 74  D-QATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQ 113

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 13/100 (13%), Positives = 23/100 (23%), Gaps = 2/100 (2%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
            +      +  P  +P    PP   +        +  P    + S      L P    L 
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
            Q     + +        + P   P   +          P
Sbjct: 71  QQIDQATTSMN--DMHLHNVPLVDPNAYMQPQVPVQMGTP 108

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 18/104 (17%), Positives = 27/104 (25%), Gaps = 1/104 (0%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
            ++         PP    P         P          +     +      +P   PN 
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95

Query: 457 RLQPLPPPS-PIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLF 499
            +QP  P     P ++Q  P   P    PS        P   L+
Sbjct: 96  YMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLY 139

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 13/103 (12%), Positives = 21/103 (20%), Gaps = 7/103 (6%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
           S  +  VY            P    +   PP            +     P     P   +
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQ---DPAAAGMSYGQMGMPPQGAVPSMGQ 58

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY 500
            Q L P       +           +  +     P   P  + 
Sbjct: 59  QQFLTPAQE----QLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 13/104 (12%), Positives = 20/104 (19%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
             S     +  P   +          S+     + +    P     P     +  P    
Sbjct: 53  VPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQ 112

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY 500
           +     P    P         P     P       P P   L  
Sbjct: 113 QQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTL 156

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 13/99 (13%), Positives = 21/99 (21%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
                     L P             +              P  +     P+    P   
Sbjct: 52  AVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQ 111

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPP 495
           + QP+  P+          +  P   L  I  +    PP
Sbjct: 112 QQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPP 150

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 18/101 (17%), Positives = 25/101 (24%), Gaps = 1/101 (0%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           Q   Q         +   P   P     P  P       +        P    P      
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 457 RLQPLPPPSPIP-CEKQPPPSPPPYGPLPSITAIPYPYPPP 496
            ++P+    PI    + PPP      P P +   P     P
Sbjct: 131 NMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVP 171

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 14/102 (13%), Positives = 24/102 (23%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
            +  Q  ++              +       P   +    P  + +P      P   P  
Sbjct: 62  LTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAY 121

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
                     +    Q  P        P IT +  P PP  +
Sbjct: 122 GQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVI 163

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 9e-05
 Identities = 11/104 (10%), Positives = 19/104 (18%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           +   Q    +            P+                 P      P        P+ 
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSA 126

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPLFY 500
            +     P             PP     ++   P   PP  +  
Sbjct: 127 AMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLV 170

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 13/191 (6%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
           +   L  +  L              V  L  L  L+L+ N+    +        +  + +
Sbjct: 36  TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT-DLAPLKNLTKITELEL 92

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
           + N     +    G   +  L L + +     PL+   +S  L  + L  N + +     
Sbjct: 93  SGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTPLA--GLSN-LQVLYLDLNQITNI--SP 146

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +  L N+    +   ++       +A ++ L  L    N +S   P  + SLPNL     
Sbjct: 147 LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHL 202

Query: 345 DYNFFTGESPV 355
             N  +  SP+
Sbjct: 203 KNNQISDVSPL 213

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 31/162 (19%), Positives = 67/162 (41%), Gaps = 13/162 (8%)

Query: 166 FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIP-KALFDKDLDAVFI 224
              L  + EL+LS N         + GL  +K LDL   +     P   L   +L  +++
Sbjct: 81  LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLAGL--SNLQVLYL 136

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
           + N+ +  +    G + +  L + N +     PL+  N+S+ L  +   +N +       
Sbjct: 137 DLNQIT-NISPLAGLTNLQYLSIGNAQVSDLTPLA--NLSK-LTTLKADDNKISD--ISP 190

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
           +  L N+    +  N++    P  +A  ++L  + + +  ++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 32/206 (15%), Positives = 74/206 (35%), Gaps = 15/206 (7%)

Query: 168 KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNN 227
            L    ++    +            L  +  L          I    +  +L  + + +N
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGVQYLNNLIGLELKDN 73

Query: 228 RFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL 287
           + + +L      + ++ L L+ N       ++   +   +  + LT+  +       +  
Sbjct: 74  QIT-DLAPLKNLTKITELELSGNPLKNVSAIA--GLQS-IKTLDLTSTQITD--VTPLAG 127

Query: 288 LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           L N+ V  +  N++   +   +A +T+LQ L++ +  +S      + +L  L     D N
Sbjct: 128 LSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDN 183

Query: 348 FFTGESPV--CLDLQGFDDKRNCLRD 371
             +  SP+    +L     K N + D
Sbjct: 184 KISDISPLASLPNLIEVHLKNNQISD 209

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 50/300 (16%), Positives = 85/300 (28%), Gaps = 89/300 (29%)

Query: 94  NLTSNWVGCYVCNYTGVFCAQAL-----DNHSIRTVAGIDLNHGDIASYLPEELGLLADI 148
            L+ N +G           A+ L         +      D+  G +   +PE L LL   
Sbjct: 38  VLSGNTIG--------TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ- 88

Query: 149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF--AGKFPYVVLGL-------PKLKFL 199
           AL                     L  + LS+N F            L         L+ L
Sbjct: 89  AL-LKCPK---------------LHTVRLSDNAFGPTA-----QEPLIDFLSKHTPLEHL 127

Query: 200 DLRYNEF--EG--KIPKALFDKDLDAVFINNNRF-SFELPDN-IGNSPVSVL--VLANNK 251
            L  N    +   KI +AL +  ++    N     S     N + N  +        +++
Sbjct: 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187

Query: 252 FHGCLPLSFGNMSRTLNEVILTNNGLHS-----CLPEEIGLLKNVTVFDVSYNKL----M 302
                          L+ V +  NG+        L E +   + + V D+  N       
Sbjct: 188 --------------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 303 GELPDTIAEMTSLQQLNVAHNMLSGTVPD----------SVCSLPNLRNFSFDYNFFTGE 352
             L   +    +L++L +   +LS               S      L+     YN    +
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLS----ARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 42/181 (23%), Positives = 81/181 (44%), Gaps = 13/181 (7%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSF 231
           +LDL +N+ +         L KL+ L L  N+ +  +P  +F +  +L+ +++ +N+   
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98

Query: 232 ELPDNIGNSPVS--VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL-- 287
            LP  + +  V+   L L  N+     P  F ++++ L  + L  N L S LP+  G+  
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYNELQS-LPK--GVFD 154

Query: 288 -LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY 346
            L ++    +  N+L         ++T L+ L + +N L      +  SL  L+      
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 347 N 347
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 9e-05
 Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 161 TLPRS-FNKLKLLFELDLSNNRF----AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           TLP   F +LK L  L +++N+      G F      L  L  L L  N+ +  +P  +F
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFD----QLVNLAELRLDRNQLK-SLPPRVF 129

Query: 216 DK--DLDAVFINNNRFSFELPDNIGNSPVS--VLVLANNKFHGCLPLSFGNMSRTLNEVI 271
           D    L  + +  N     LP  + +   S   L L NN+       +F  ++  L  + 
Sbjct: 130 DSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTE-LKTLK 187

Query: 272 LTNNGLHSCLPEEIGLLKNVTVFDVSYN 299
           L NN L          L+ + +  +  N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 27/117 (23%), Positives = 34/117 (29%), Gaps = 13/117 (11%)

Query: 397 QSSPQPPVYSLPPPVRPPPPP-------PPVPVSLPPPPTYCIHSPRPPPLFSPT---PT 446
              P+     +P                PPV V  P PP     +   PP          
Sbjct: 13  GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQ 72

Query: 447 PILPPP--PPNLRLQPLPPPSPIPCEKQPPPSPPPYGP-LPSITAIPYPYPPPPLFY 500
            IL  P  P    L P       P  + P  +PP  G  +P +   P P P P    
Sbjct: 73  RILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 20/101 (19%), Positives = 24/101 (23%), Gaps = 6/101 (5%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
           SS     +S     R      P          +         L  P   P   PPPP   
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDF------LAALHPPVTVPDPAPPPPPAP 56

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
               PP +             P GP  +  A    Y   P 
Sbjct: 57  AAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPG 97

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 16/104 (15%), Positives = 19/104 (18%), Gaps = 3/104 (2%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPP---PVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPP 453
            S       S   P       P       +             P P   P P P    PP
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 454 PNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             +    +              S  P            P   PP
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPP 106

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 21/102 (20%), Positives = 27/102 (26%), Gaps = 9/102 (8%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLP--PPPTYCIHSPRPPPLFSPT------PTPI 448
            ++        PP   P P PPP P      PP T    S     L  PT        P 
Sbjct: 30  SAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAPA 89

Query: 449 LPPPPPNLRLQPLP-PPSPIPCEKQPPPSPPPYGPLPSITAI 489
           +          P   PP+           P P      +  +
Sbjct: 90  VRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEV 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 55/332 (16%), Positives = 98/332 (29%), Gaps = 85/332 (25%)

Query: 104 VCNYTGVFCAQALDNHSIRTV-AGI-------DLNHGDIASYLPEELGLLADIALFHVNT 155
           V ++  V C    D  ++  +   +        L+   + ++    L     +   +++ 
Sbjct: 9   VASHLEVNC----DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
                 L      L +L  LDLS+N+     P +   LP L  LD+ +N     +P    
Sbjct: 65  AEL-TKLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGAL 120

Query: 216 DK--DLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT 273
               +L  +++  N     LP  +                           + L ++ L 
Sbjct: 121 RGLGELQELYLKGNELK-TLPPGL----------------------LTPTPK-LEKLSLA 156

Query: 274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSV 333
           NN L   LP          + +                + +L  L +  N L  T+P   
Sbjct: 157 NNNLTE-LPAG--------LLN---------------GLENLDTLLLQENSLY-TIPKGF 191

Query: 334 CSLPNLRNFSFDYNFFTGESP-VC----LDLQGFDDKRNCLRDKP-RQRSTLQCRMFLSR 387
                L       N      P +C    L        R  L+D         Q     + 
Sbjct: 192 FGSHLLPFAFLHGN------PWLCNCEILYF------RRWLQDNAENVYVWKQGVDVKAM 239

Query: 388 LVYCNTLKCQSSPQPPVYSLPPPVRPPPPPPP 419
                +++C +S + PVY  P    P      
Sbjct: 240 TSNVASVQCDNSDKFPVYKYPGKGCPTLGDEG 271

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 49.5 bits (116), Expect = 2e-06
 Identities = 18/103 (17%), Positives = 26/103 (25%), Gaps = 10/103 (9%)

Query: 392 NTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPP 451
            T      P   +  +P         P +  SL         +   P +    PTP + P
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKI----RAVNVPKVTKEKPTPPVKP 457

Query: 452 PPPNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYP 494
             P         P        P P  P Y   P+       + 
Sbjct: 458 TAPTKPTYETEKPLK------PAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 48.4 bits (113), Expect = 4e-06
 Identities = 19/93 (20%), Positives = 25/93 (26%), Gaps = 7/93 (7%)

Query: 405 YSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPP 464
            +    V P    P VP              +P   +S          P   + +P PP 
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDG------KKPNIWYSLNGKIRAVNVPKVTKEKPTPPV 455

Query: 465 SPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
            P    K    +  P  P P         P PP
Sbjct: 456 KPTAPTKPTYETEKPLKPAPVAPNYE-KEPTPP 487

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 33/193 (17%), Positives = 72/193 (37%), Gaps = 13/193 (6%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
           + N+L  + ++  +N+         +  LP +  L L  N+    I      K+L  +F+
Sbjct: 38  TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFL 94

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
           + N+   +L        +  L L +N       L   ++ + L  + L NN +       
Sbjct: 95  DENKIK-DLSSLKDLKKLKSLSLEHNGISDINGLV--HLPQ-LESLYLGNNKITD--ITV 148

Query: 285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF 344
           +  L  +    +  N++  ++   +A +T LQ L ++ N +  +   ++  L NL     
Sbjct: 149 LSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLEL 204

Query: 345 DYNFFTGESPVCL 357
                  +     
Sbjct: 205 FSQECLNKPINHQ 217

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 23/230 (10%)

Query: 168 KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNN 227
                 + +L               L  +  +    ++ +  +    +  ++  +F+N N
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGN 75

Query: 228 RFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL 287
           + + ++        +  L L  NK      L   ++ + L  + L +NG+       +  
Sbjct: 76  KLT-DIKPLTNLKNLGWLFLDENKIKDLSSLK--DLKK-LKSLSLEHNGISD--INGLVH 129

Query: 288 LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           L  +    +  NK+       ++ +T L  L++  N +S  VP  +  L  L+N     N
Sbjct: 130 LPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185

Query: 348 FFTGESPVCLDLQGFDDKRNCLR--DKPRQRSTLQCRMFLSRLVYCNTLK 395
             +       DL+     +N L   +   Q    +     S LV  NT+K
Sbjct: 186 HIS-------DLRALAGLKN-LDVLELFSQECLNKPINHQSNLVVPNTVK 227

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 32/202 (15%), Positives = 74/202 (36%), Gaps = 11/202 (5%)

Query: 166 FNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN 225
              LK L  L L  N+        +  L KLK L L +N     I   +    L+++++ 
Sbjct: 83  LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLG 139

Query: 226 NNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI 285
           NN+ + ++      + +  L L +N+    +PL+   ++  L  + L+ N +       +
Sbjct: 140 NNKIT-DITVLSRLTKLDTLSLEDNQISDIVPLA--GLT-KLQNLYLSKNHISDL--RAL 193

Query: 286 GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFD 345
             LKN+ V ++   + + +  +  + +     +      L    P+ +    +    +  
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVK 251

Query: 346 YNFFTGESPVCLDLQGFDDKRN 367
           ++     + V            
Sbjct: 252 WHLPEFTNEVSFIFYQPVTIGK 273

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 47.3 bits (112), Expect = 4e-06
 Identities = 19/99 (19%), Positives = 21/99 (21%), Gaps = 11/99 (11%)

Query: 400 PQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL- 458
           P    Y       P     P P   PP P        P     P+    L      L L 
Sbjct: 5   PTQTFYGRRWRPAPVQRYIPQPQ--PPAP--------PRRRRGPSQLQQLVAALGALALQ 54

Query: 459 QPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                       K+ PP  P     P          P  
Sbjct: 55  PKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGK 93

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 6/89 (6%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           Q+         P     P P PP P      P+      +   L +      L P     
Sbjct: 7   QTFYGRRWRPAPVQRYIPQPQPPAPPRRRRGPS------QLQQLVAALGALALQPKQKQK 60

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPS 485
           R Q  P  +P P  K+      P     S
Sbjct: 61  RAQKKPKKTPPPKPKKTQKPKKPTQKKKS 89

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLD 220
             +F  +  L  LDLS+N       ++   L  L+ L L  N     + +  F+    L 
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQ 139

Query: 221 AVFINNNRFSFELPDNIGNSPVS-----VLVLANNKFHGCLPLSFGNMSRTLNEVI-LTN 274
            ++++ N+ S   P  +           +L L++NK           +   +   + L N
Sbjct: 140 KLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

Query: 275 NGLHSCLPEEIGLLKN 290
           N L  C  +   L  +
Sbjct: 199 NPLE-CDCKLYQLFSH 213

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 48/269 (17%), Positives = 86/269 (31%), Gaps = 53/269 (19%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
           +  +L  L  L LS+N          + +P L++LDL  N     + + LF         
Sbjct: 59  TPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFS-------- 109

Query: 225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE 284
                            + VL+L NN        +F +M++ L ++ L+ N +    P E
Sbjct: 110 -------------DLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISR-FPVE 154

Query: 285 I----GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQ--LNVAHNMLSGTVPDSVCSL-- 336
           +      L  + + D+S NKL       + ++ +  +  L + +N L     +  C L  
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL-----ECDCKLYQ 209

Query: 337 --PNLRNFSFDYNFFTGESPVCL---DLQGF--DDKRNCLRDKPRQRSTLQCRMFLSRLV 389
              + +           E   C+    L      D  NC   K                 
Sbjct: 210 LFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTL----- 264

Query: 390 YCNTLKCQSSPQP-PVYSLPPPVRPPPPP 417
              T++C +  Q      + P        
Sbjct: 265 ---TIRCDTKQQGMTKVWVSPSNEQVLSQ 290

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 29/173 (16%)

Query: 174 ELDLSNNRFAGKFPYVVL-GLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFS 230
            LDLS+N  +          L  L  L L +N     I    F    +L  + +++N   
Sbjct: 43  LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 231 FELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLL 288
             L + +      + VL+L NN        +F +M++ L ++ L+ N +    P E    
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISR-FPVE---- 154

Query: 289 KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN 341
               +                 ++  L  L+++ N L       +  LP    
Sbjct: 155 ----LIK------------DGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 8e-04
 Identities = 19/118 (16%), Positives = 52/118 (44%), Gaps = 5/118 (4%)

Query: 232 ELPDNIGNSPVSVLVLANNKFHGCLP-LSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLK 289
            +P ++ +   ++L L++N         +   ++  L+ ++L++N L+  +  E    + 
Sbjct: 32  NVPQSLPSY-TALLDLSHNNLSRLRAEWTPTRLTN-LHSLLLSHNHLNF-ISSEAFVPVP 88

Query: 290 NVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN 347
           N+   D+S N L        +++ +L+ L + +N +     ++   +  L+      N
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 4/102 (3%)

Query: 155 TNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVL-GLPKLKFLDLRYNEFEGKIPKA 213
           T              + L EL + N +         L GL +L+ L +  +     +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 214 LFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFH 253
            F     L  + ++ N         +    +  LVL+ N  H
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 34/191 (17%), Positives = 75/191 (39%), Gaps = 15/191 (7%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI 224
           + N+L  + ++  +N+         +  LP +  L L  N+    I      K+L  +F+
Sbjct: 41  TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFL 97

Query: 225 NNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPE 283
           + N+   +L  ++ +   +  L L +N       L   ++ + L  + L NN +      
Sbjct: 98  DENKVK-DL-SSLKDLKKLKSLSLEHNGISDINGLV--HLPQ-LESLYLGNNKITD--IT 150

Query: 284 EIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFS 343
            +  L  +    +  N++  ++   +A +T LQ L ++ N +S     ++  L NL    
Sbjct: 151 VLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLE 206

Query: 344 FDYNFFTGESP 354
                   +  
Sbjct: 207 LFSQECLNKPI 217

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 3/100 (3%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
           ++P+  V   P P     P   +P S           P PPP        +      +L 
Sbjct: 6   ATPEIRVNHEPEPAGGATPGATLPKSPSQLRKG---PPVPPPPKHTPSKEVKQEQILSLF 62

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                P   +    QP  +    G          P     
Sbjct: 63  EDTFVPEISVTTPSQPAEASEVAGGTQPAAGAQEPGETAA 102

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 399 SPQPPVYSLPPPVRPPPP-----PPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPP 453
            P+P   + P    P  P      PPVP      P+  +   +   LF  T  P +    
Sbjct: 15  EPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTT 74

Query: 454 PNLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
           P+   +                         + +++P       
Sbjct: 75  PSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAVVVETF 118

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 43.1 bits (100), Expect = 7e-05
 Identities = 14/101 (13%), Positives = 18/101 (17%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
                P      PPV PPP   P                  P +   TP+          
Sbjct: 27  TLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISVTTPSQPAEASEVAG 86

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             QP               +      +   T          
Sbjct: 87  GTQPAAGAQEPGETAASEAASSSLPAVVVETFPATVNGTVE 127

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 5/92 (5%)

Query: 406 SLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPS 465
           +  P +R    P P   + P           P  L    P P  P   P+  ++     S
Sbjct: 5   AATPEIRVNHEPEPAGGATPGATL----PKSPSQLRKGPPVPPPPKHTPSKEVKQEQILS 60

Query: 466 PIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
               +   P         P+  +       P 
Sbjct: 61  LFE-DTFVPEISVTTPSQPAEASEVAGGTQPA 91

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 15/101 (14%), Positives = 25/101 (24%), Gaps = 1/101 (0%)

Query: 399 SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
           + +P       P    P  P      PP P    H+P          +       P + +
Sbjct: 13  NHEPEPAGGATPGATLPKSPSQLRKGPPVPPPPKHTPSKEVKQEQILSLFEDTFVPEISV 72

Query: 459 Q-PLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
             P  P           P+     P  +  +       P +
Sbjct: 73  TTPSQPAEASEVAGGTQPAAGAQEPGETAASEAASSSLPAV 113

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 15/90 (16%), Positives = 18/90 (20%), Gaps = 1/90 (1%)

Query: 408 PPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPLPPPSPI 467
             P   P              T     P+ P      P P+ PPP      +        
Sbjct: 2   GSPAATPEIRVNHEPEPAGGATPGATLPKSPSQLRKGP-PVPPPPKHTPSKEVKQEQILS 60

Query: 468 PCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
             E    P      P     A        P
Sbjct: 61  LFEDTFVPEISVTTPSQPAEASEVAGGTQP 90

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 16/164 (9%)

Query: 165 SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIP--KALFDKDLDAV 222
           S  +L  +   +  N+    +    +     LK L L +N+    +   K L    L+ +
Sbjct: 36  SQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS-DLSPLKDL--TKLEEL 90

Query: 223 FINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP 282
            +N NR    L + I ++ +S L L NN+      L   ++   L  + + NN L S   
Sbjct: 91  SVNRNRLK-NL-NGIPSACLSRLFLDNNELRDTDSLI--HLKN-LEILSIRNNKLKS--I 143

Query: 283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
             +G L  + V D+  N++       +  +  +  +++      
Sbjct: 144 VMLGFLSKLEVLDLHGNEI--TNTGGLTRLKKVNWIDLTGQKCV 185

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 44.7 bits (105), Expect = 8e-05
 Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
            SP  P YS   P   P  P   P S    PT   +SP  P  +SPT     P  P     
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPT 1686

Query: 459  QP-LPPPSPIPCEKQP--PPSPPPYGP 482
             P   P SP      P   P+ P Y P
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSP 1713

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 30/95 (31%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 397  QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPT---YCIHSPRPPPL---FSPTPTPILP 450
              SP  P YS   P   P  P   P S    PT   Y   SP   P    +SPT     P
Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699

Query: 451  PPPPNLRLQPL-PPPSP--IPCEKQPPPSPPPYGP 482
              P      P   P SP   P      P+ P Y P
Sbjct: 1700 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 33/110 (30%), Positives = 37/110 (33%), Gaps = 13/110 (11%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVS---LPPPPTYCIHSPRP---PPLFSPTPTPILPPP 452
            S   P YS   P   P  P   P S    P  P+Y   SP      P +SPT     P  
Sbjct: 1607 SATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1666

Query: 453  PPNLRLQP-LPPPSPIPCEKQPPPSPPPYGPL-PSITAIPYPYPPPPLFY 500
            P      P   P SP        P+ P Y P  PS +     Y P    Y
Sbjct: 1667 PSYSPTSPSYSPTSP-----SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 32/105 (30%), Positives = 37/105 (35%), Gaps = 3/105 (2%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLF--SPTPTPILPPPPPNL 456
            SP  P YS   P   P  P   P S    PT   +SP  P     SP+ +P  P   P  
Sbjct: 1578 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1637

Query: 457  RLQPLPPPSPIPCEKQPPPSPPPYGPL-PSITAIPYPYPPPPLFY 500
                   PS  P      P+ P Y P  PS +     Y P    Y
Sbjct: 1638 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.9 bits (103), Expect = 1e-04
 Identities = 33/112 (29%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVSL---PPPPTYCIHSPR---PPPLFSPTPTPILPPP 452
            SP  P YS   P   P  P   P S    P  P+Y   SP      P +SPT     P  
Sbjct: 1585 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1644

Query: 453  PPNLRLQPLPPPSPIPCEKQPP---PSPPPYGPL-PSITAIPYPYPPPPLFY 500
            P      P   P+        P   P+ P Y P  PS +     Y P    Y
Sbjct: 1645 PSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY 1696

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 35/109 (32%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
            SP  P YS   P   P  P   P S    PT   +SP  P  +SPT +P   P  P+   
Sbjct: 1557 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPT-SPSYSPTSPS--Y 1612

Query: 459  QPLPP------PSPIPCEKQPPPSPPPYGPL-PSITAIPYPYPPPPLFY 500
             P  P      PS  P      P+ P Y P  PS +     Y P    Y
Sbjct: 1613 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1661

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 26/102 (25%), Positives = 33/102 (32%), Gaps = 3/102 (2%)

Query: 399  SPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRL 458
            SP  P YS   P   P  P   P S    PT   +SP  P     +P+     P  +   
Sbjct: 1627 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1686

Query: 459  QPLPPPSPI--PCEKQPPPSPPPYGPL-PSITAIPYPYPPPP 497
                P SP   P      P+ P Y P  P+ +          
Sbjct: 1687 PSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNE 1728

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 43.2 bits (100), Expect = 2e-04
 Identities = 23/96 (23%), Positives = 27/96 (28%)

Query: 402 PPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLRLQPL 461
            P    PP +    P P  P    P         R  P  +P      PP    LRL   
Sbjct: 16  GPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVD 75

Query: 462 PPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
              SP   E    P+ P  G     +      PP  
Sbjct: 76  EVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHL 111

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 41.3 bits (95), Expect = 6e-04
 Identities = 21/102 (20%), Positives = 27/102 (26%), Gaps = 5/102 (4%)

Query: 397 QSSPQPPVYSLPPPV-RPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPN 455
           +  P PP  + P    R P P  P   +     +      R        P      PP  
Sbjct: 12  RRRPGPPRIAPPKLACRTPSPARPALRAPASATS----GSRKRARPPAAPGRDQARPPAR 67

Query: 456 LRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
            RL+        P   + P  P    P   I         PP
Sbjct: 68  RRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPP 109

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 20/183 (10%)

Query: 169 LKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNR 228
           L  +  L+    +            P LK L++        + + +   DL    +    
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPN--LEKLV 225

Query: 229 FSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIG-- 286
               + D   +  ++V            PL   +    L  + + +    + + E     
Sbjct: 226 LYVGVEDYGFDGDMNVFR----------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES 275

Query: 287 -LLKNVTVFDVSYNKL----MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC-SLPNLR 340
            +L  +   D+S   L       L D + ++  L+ +N+ +N LS  +   +  SLP   
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKI 335

Query: 341 NFS 343
           + S
Sbjct: 336 DVS 338

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 4/66 (6%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           +S   PP      P      P     +     T    S  PPP      +       P +
Sbjct: 11  RSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSST----SRAPPPTNPDASSSSSSFAVPTI 66

Query: 457 RLQPLP 462
             +  P
Sbjct: 67  HFKESP 72

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 163 PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLD 220
             +F     + E+ L++NR       +  GL  LK L LR N     +    F     + 
Sbjct: 74  EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVR 132

Query: 221 AVFINNNRFS 230
            + + +N+ +
Sbjct: 133 LLSLYDNQIT 142

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 19/101 (18%), Positives = 30/101 (29%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
                P    P  +  P      P++   PP   I SP  P   S   TP L     + +
Sbjct: 39  HPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQ 98

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
           L     P     + +PP        +P+  +         +
Sbjct: 99  LSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI 139

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 14/99 (14%), Positives = 19/99 (19%), Gaps = 7/99 (7%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           +  P+P         R P    P     PP              +          P    
Sbjct: 3   KKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGG-WGQPHGGGWGQPHGGGWGQPHGGG 61

Query: 457 RLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPP 495
             QP             P     +G   +      P  P
Sbjct: 62  WGQPHGGGWG------QPHGGGGWGQGGTHGQWNKPSKP 94

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 16/100 (16%), Positives = 24/100 (24%)

Query: 398 SSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNLR 457
            +  P  Y        PPPPPP   S    P     S       +P  +P  P P  +  
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGG 74

Query: 458 LQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPP 497
                  S    +     +      +   +          
Sbjct: 75  GGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAA 114

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/153 (19%), Positives = 60/153 (39%), Gaps = 29/153 (18%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDK--DLDAVFINNNRFSF 231
           E+ L  N      P       KL+ +DL  N+   ++    F     L+++ +  N+ + 
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 232 ELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI-GLLKN 290
           ELP ++                      F  +   L  ++L  N + +CL  +    L N
Sbjct: 94  ELPKSL----------------------FEGLFS-LQLLLLNANKI-NCLRVDAFQDLHN 129

Query: 291 VTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHN 323
           + +  +  NKL      T + + ++Q +++A N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 13/89 (14%), Positives = 18/89 (20%), Gaps = 5/89 (5%)

Query: 391 CNTLKCQSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILP 450
              L    +  PP      P    P    +P                  + S  P P   
Sbjct: 31  SKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTS 90

Query: 451 PPPPNLRLQPLPPPSPIPCEKQPPPSPPP 479
            P        +        +   P S P 
Sbjct: 91  SPES-----IMGYSYMDSYQTSSPASIPH 114

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 14/104 (13%), Positives = 20/104 (19%), Gaps = 4/104 (3%)

Query: 399 SPQPPVYSLPPPVRPPPPP----PPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPP 454
              P   ++   ++         P    +LPP           P   +  P   L     
Sbjct: 12  QAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQT 71

Query: 455 NLRLQPLPPPSPIPCEKQPPPSPPPYGPLPSITAIPYPYPPPPL 498
                     S  P      P                P   P L
Sbjct: 72  YGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHL 115

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 12/82 (14%), Positives = 18/82 (21%), Gaps = 2/82 (2%)

Query: 397 QSSPQPPVYSLPPPVRPPPPPPPVPVSLPPPPTYCIHSPRPPPLFSPTPTPILPPPPPNL 456
           + S Q  V +  P     P   P               P   P    T         P  
Sbjct: 240 ERSYQRAVITNRPG-SVSPIKSPTSNFTTNTTQSVGSVPFSAP-TERTRRSETESVNPVS 297

Query: 457 RLQPLPPPSPIPCEKQPPPSPP 478
               +   + +    + P S  
Sbjct: 298 TPASVEYHAGMKSLNKAPYSSN 319

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	500
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.69
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.49
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.45
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.24
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.0
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.93
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.8
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.64
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.29

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.8e-40  Score=323.88  Aligned_cols=288  Identities=25%  Similarity=0.397  Sum_probs=256.9

Q ss_pred             hhHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCC--cCceecCCCCCCCCcCcEEEEECCCCCCcc--cCchhhcCCCC
Q 041736           73 RIRSAYIALQAWKKAIISDPWNLTSNWV-GCYVCN--YTGVFCAQALDNHSIRTVAGIDLNHGDIAS--YLPEELGLLAD  147 (500)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~c~--~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~  147 (500)
                      |..++..||++||..+ .++. ...+|. +.+||.  |.||.|+..   ....+|+.|+|++|.+.+  .++..|+++++
T Consensus         3 c~~~~~~aL~~~k~~~-~~~~-~l~~W~~~~~~C~~~w~gv~C~~~---~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~   77 (313)
T 1ogq_A            3 CNPQDKQALLQIKKDL-GNPT-TLSSWLPTTDCCNRTWLGVLCDTD---TQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHT-TCCG-GGTTCCTTSCTTTTCSTTEEECCS---SSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCHHHHHHHHHHHHhc-CCcc-cccCCCCCCCCCcCCCcceEeCCC---CCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence            3456777888888876 3554 567885 468898  999999642   112589999999999999  89999999999


Q ss_pred             CCEEEcCC-CCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEcc
Q 041736          148 IALFHVNT-NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFIN  225 (500)
Q Consensus       148 L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~  225 (500)
                      |++|+|++ |.+++.+|..|+++++|++|+|++|++++.+|..+.++++|++|+|++|++++.+|..+.. ++|++|+++
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence            99999995 9999999999999999999999999999999999999999999999999999989887765 899999999


Q ss_pred             CCCccCCCCCccCC-C-CcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC
Q 041736          226 NNRFSFELPDNIGN-S-PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG  303 (500)
Q Consensus       226 ~n~l~~~~p~~~~~-~-~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  303 (500)
                      +|++++.+|..++. . +|++|++++|.+++.++..+..+.  |++|++++|.+++.++..+..+++|++|+|++|++++
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  235 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence            99999999988876 3 799999999999999999999985  9999999999999999999999999999999999997


Q ss_pred             CChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc---cCCEEEcCCCC
Q 041736          304 ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL---DLQGFDDKRNC  368 (500)
Q Consensus       304 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~---~L~~l~l~~N~  368 (500)
                      .++. +..+++|++|+|++|.+++.+|..+..+++|++|+|++|+++|.+|...   .|+.+++++|.
T Consensus       236 ~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             BGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            7765 8889999999999999999999999999999999999999999998753   46667777664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-36  Score=327.69  Aligned_cols=288  Identities=19%  Similarity=0.324  Sum_probs=239.1

Q ss_pred             hhHHHHHHHHHHHHhccCCCCCCCC-------CCC-CCCCCCc---CceecCCCCCCCCcCcEEEEECCCCCCcccCchh
Q 041736           73 RIRSAYIALQAWKKAIISDPWNLTS-------NWV-GCYVCNY---TGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEE  141 (500)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~~~~~-------~w~-~~~~c~~---~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~  141 (500)
                      ....|+.||.+++.++.++.|...+       +|. +.++|.|   .||+|+..      .+|+.|+|+++++.|.+|.+
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l~g~lp~~  100 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN------GRVTGLSLEGFGASGRVPDA  100 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT------CCEEEEECTTSCCEEEECGG
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC------CCEEEEEecCcccCCcCChH
Confidence            3445666777776666555565444       796 5689999   99999642      68999999999999999999


Q ss_pred             hcCCCCCCEEEcCCCC----------------------------------------------------------------
Q 041736          142 LGLLADIALFHVNTNR----------------------------------------------------------------  157 (500)
Q Consensus       142 l~~l~~L~~L~L~~n~----------------------------------------------------------------  157 (500)
                      |++|++|++|+|++|.                                                                
T Consensus       101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  180 (636)
T 4eco_A          101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR  180 (636)
T ss_dssp             GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred             HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence            9999999999999884                                                                


Q ss_pred             --------------CCccCCccccCCCCCCEEeCcCCcCCCc-----------------Cchhcc--CCCCCcEEeccCC
Q 041736          158 --------------FCGTLPRSFNKLKLLFELDLSNNRFAGK-----------------FPYVVL--GLPKLKFLDLRYN  204 (500)
Q Consensus       158 --------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~N  204 (500)
                                    ++| +|..|+++++|++|+|++|++++.                 +|..+.  ++++|++|+|++|
T Consensus       181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n  259 (636)
T 4eco_A          181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC  259 (636)
T ss_dssp             CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred             cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence                          334 788899999999999999999985                 899988  9999999999999


Q ss_pred             cCCCCCchhhcC-CCCCeEEccCCC-ccC-CCCCccCC-------CCcceEEeccccccccCch--hhhcccccCcEEEe
Q 041736          205 EFEGKIPKALFD-KDLDAVFINNNR-FSF-ELPDNIGN-------SPVSVLVLANNKFHGCLPL--SFGNMSRTLNEVIL  272 (500)
Q Consensus       205 ~l~g~~p~~~~~-~~L~~L~l~~n~-l~~-~~p~~~~~-------~~L~~L~l~~n~l~~~~p~--~l~~l~~~L~~L~L  272 (500)
                      ++.|.+|..+.. ++|++|++++|+ ++| .+|..++.       .+|++|++++|.++ .+|.  .++++.+ |++|++
T Consensus       260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L~~L~L  337 (636)
T 4eco_A          260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-LGMLEC  337 (636)
T ss_dssp             TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-CCEEEC
T ss_pred             cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-CCEEeC
Confidence            999999988776 799999999998 888 78877765       68999999999998 7888  8999887 999999


Q ss_pred             ccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCC-CcEEEcccCCCCCCCchhhcCCC--CCcEEEccCCcC
Q 041736          273 TNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTS-LQQLNVAHNMLSGTVPDSVCSLP--NLRNFSFDYNFF  349 (500)
Q Consensus       273 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~N~l~g~ip~~l~~l~--~L~~L~Ls~N~l  349 (500)
                      ++|.++|.+| .++.+++|++|+|++|+++ .+|..+..+++ |++|+|++|.++ .+|..+..+.  +|++|++++|.+
T Consensus       338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI  414 (636)
T ss_dssp             CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred             cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence            9999998888 8888888888899888888 78888888888 888888888888 7777766654  788888888888


Q ss_pred             ccCCCC-----------CccCCEEEcCCCCCCCC
Q 041736          350 TGESPV-----------CLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       350 ~g~~p~-----------~~~L~~l~l~~N~l~~~  372 (500)
                      ++.+|.           ..+|+.|++++|.+...
T Consensus       415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l  448 (636)
T 4eco_A          415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF  448 (636)
T ss_dssp             TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred             CCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence            876653           22567777777777743

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.1e-35  Score=321.44  Aligned_cols=272  Identities=28%  Similarity=0.453  Sum_probs=242.7

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|+|++|.+++.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|++++.+|..+..+++|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            46788999999999988999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736          201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH  278 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~  278 (500)
                      |++|+++|.+|..+.. ++|++|++++|++++.+|..++. .+|++|++++|.+++.+|..++.+.+ |++|++++|.++
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~  551 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS-LIWLDLNTNLFN  551 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTT-CCEEECCSSEEE
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCC-CCEEECCCCccC
Confidence            9999999988887765 89999999999999999988765 78999999999999999999999987 999999999988


Q ss_pred             CCCcccc----------------------------------------------------------------------ccC
Q 041736          279 SCLPEEI----------------------------------------------------------------------GLL  288 (500)
Q Consensus       279 ~~~p~~~----------------------------------------------------------------------~~l  288 (500)
                      |.+|..+                                                                      +.+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            7776543                                                                      335


Q ss_pred             CCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc----cCCEEEc
Q 041736          289 KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL----DLQGFDD  364 (500)
Q Consensus       289 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~----~L~~l~l  364 (500)
                      ++|++|||++|+++|.+|..++.+++|+.|+|++|.++|.+|..++++++|++|||++|+++|.+|..+    .|+.|++
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l  711 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL  711 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence            779999999999999999999999999999999999999999999999999999999999999999743    6999999


Q ss_pred             CCCCCCCCCCCCC---hhhhhhhcccccccCc
Q 041736          365 KRNCLRDKPRQRS---TLQCRMFLSRLVYCNT  393 (500)
Q Consensus       365 ~~N~l~~~~~~~~---~~~~~~~~~~~~~c~~  393 (500)
                      ++|.++|.++...   .+....+.+++..|+.
T Consensus       712 s~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             CSSEEEEECCSSSSGGGSCGGGGCSCTEEEST
T ss_pred             cCCcccccCCCchhhccCCHHHhcCCchhcCC
Confidence            9999999887543   3344567777777764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.5e-35  Score=323.37  Aligned_cols=289  Identities=23%  Similarity=0.305  Sum_probs=200.4

Q ss_pred             hHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCCcCceecCCCCCCCCcCcEEEEECCCCCCccc---Cc----------
Q 041736           74 IRSAYIALQAWKKAIISDPWNLTSNWV-GCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASY---LP----------  139 (500)
Q Consensus        74 ~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~---~p----------  139 (500)
                      ...++.||++||+.+. |+. .+++|. +.+||+|+||+|+.       .+|+.|||+++.+.|.   ++          
T Consensus        10 ~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A           10 LYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             HHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             CHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECC-------CcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            3456667777777664 666 778895 67899999999962       5788888888877765   33          


Q ss_pred             -------------hhhcCCCCCCEEEcCCCCCCccCCc--cccCCCCCCEEeCcCCcCCCcCchhc-cCCCCCcEEeccC
Q 041736          140 -------------EELGLLADIALFHVNTNRFCGTLPR--SFNKLKLLFELDLSNNRFAGKFPYVV-LGLPKLKFLDLRY  203 (500)
Q Consensus       140 -------------~~l~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~  203 (500)
                                   ..|+.+++|++|+|++|.++|.++.  .++++++|++|+|++|.+.+.++..+ .++++|++|+|++
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                         3566667777777777777777776  77777777777777777776666544 5666666666666


Q ss_pred             CcCCCCCchh---h-----------------------cCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCc
Q 041736          204 NEFEGKIPKA---L-----------------------FDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLP  257 (500)
Q Consensus       204 N~l~g~~p~~---~-----------------------~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p  257 (500)
                      |++++..+..   +                       ...+|++|++++|++++.++..-...+|++|++++|.+++.++
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  240 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS  240 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc
Confidence            6666554433   1                       1145555666666665555552223556666666666666666


Q ss_pred             hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCC-CCCcEEEcccCCCCCCCchhhcCC
Q 041736          258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEM-TSLQQLNVAHNMLSGTVPDSVCSL  336 (500)
Q Consensus       258 ~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~N~l~g~ip~~l~~l  336 (500)
                      ..++.+.+ |++|++++|.+.+.++..  .+++|++|+|++|+++|.+|..+... ++|++|+|++|.+++.+|..+.++
T Consensus       241 ~~l~~l~~-L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          241 RAISTCTE-LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             HHTTTCSS-CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             HHHhcCCC-CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence            66666665 666666666666655543  66677777777777777777777664 788888888888888888888888


Q ss_pred             CCCcEEEccCCcCccCCCC-----CccCCEEEcCCCCCCCCCC
Q 041736          337 PNLRNFSFDYNFFTGESPV-----CLDLQGFDDKRNCLRDKPR  374 (500)
Q Consensus       337 ~~L~~L~Ls~N~l~g~~p~-----~~~L~~l~l~~N~l~~~~~  374 (500)
                      ++|++|++++|.++|.+|.     ..+|+.|++++|.+.+..+
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p  360 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP  360 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence            8888888888888877764     3468888888888875544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7e-35  Score=320.67  Aligned_cols=288  Identities=19%  Similarity=0.297  Sum_probs=245.4

Q ss_pred             hhHHHHHHHHHHHHhccCCCCCCCCCCCCCCC--CCc------------CceecCCCCCCCCcCcEEEEECCCCCCcccC
Q 041736           73 RIRSAYIALQAWKKAIISDPWNLTSNWVGCYV--CNY------------TGVFCAQALDNHSIRTVAGIDLNHGDIASYL  138 (500)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~--c~~------------~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~  138 (500)
                      ....++.||++||.++....|....+|...++  |+|            .||.|+..      .+|+.|+|+++++.|.+
T Consensus       266 ~~~~d~~ALl~~k~~l~~~~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~~~L~G~i  339 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLAGFGAKGRV  339 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECTTTCCEEEE
T ss_pred             cchHHHHHHHHHHHHcCCCCCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEECccCCCCCcC
Confidence            45567888888888874433544444544455  999            99999742      68999999999999999


Q ss_pred             chhhcCCCCCCEEEc-CCCCCCcc--------------------------------------------------------
Q 041736          139 PEELGLLADIALFHV-NTNRFCGT--------------------------------------------------------  161 (500)
Q Consensus       139 p~~l~~l~~L~~L~L-~~n~l~~~--------------------------------------------------------  161 (500)
                      |..|++|++|++|+| ++|.++|.                                                        
T Consensus       340 p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~  419 (876)
T 4ecn_A          340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK  419 (876)
T ss_dssp             CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCC
T ss_pred             chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccc
Confidence            999999999999999 77755443                                                        


Q ss_pred             --------------------CCccccCCCCCCEEeCcCCcCCC-----------------cCchhcc--CCCCCcEEecc
Q 041736          162 --------------------LPRSFNKLKLLFELDLSNNRFAG-----------------KFPYVVL--GLPKLKFLDLR  202 (500)
Q Consensus       162 --------------------~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls  202 (500)
                                          +|..|+++++|++|+|++|+|++                 .+|..++  ++++|++|+|+
T Consensus       420 ~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls  499 (876)
T 4ecn_A          420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY  499 (876)
T ss_dssp             CCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred             ccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc
Confidence                                78889999999999999999998                 3898887  99999999999


Q ss_pred             CCcCCCCCchhhcC-CCCCeEEccCCC-ccC-CCCCccCC--------CCcceEEeccccccccCch--hhhcccccCcE
Q 041736          203 YNEFEGKIPKALFD-KDLDAVFINNNR-FSF-ELPDNIGN--------SPVSVLVLANNKFHGCLPL--SFGNMSRTLNE  269 (500)
Q Consensus       203 ~N~l~g~~p~~~~~-~~L~~L~l~~n~-l~~-~~p~~~~~--------~~L~~L~l~~n~l~~~~p~--~l~~l~~~L~~  269 (500)
                      +|++.+.+|..+.. .+|++|++++|+ ++| .+|..++.        .+|++|++++|.+. .+|.  .|+++.+ |++
T Consensus       500 ~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~-L~~  577 (876)
T 4ecn_A          500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK-LGL  577 (876)
T ss_dssp             SCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT-CCE
T ss_pred             CCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC-CCE
Confidence            99999999987776 899999999998 888 77765543        37999999999999 8888  8999997 999


Q ss_pred             EEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCC-CcEEEcccCCCCCCCchhhcCCCC--CcEEEccC
Q 041736          270 VILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTS-LQQLNVAHNMLSGTVPDSVCSLPN--LRNFSFDY  346 (500)
Q Consensus       270 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~L~~N~l~g~ip~~l~~l~~--L~~L~Ls~  346 (500)
                      |+|++|.++ .+| .++.+++|+.|+|++|+++ .+|..+..+++ |++|+|++|.++ .+|..+..+..  |++|+|++
T Consensus       578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~  653 (876)
T 4ecn_A          578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSY  653 (876)
T ss_dssp             EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCS
T ss_pred             EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcC
Confidence            999999999 677 8999999999999999999 89988999999 999999999998 88888776654  99999999


Q ss_pred             CcCccCCCCCc---------cCCEEEcCCCCCCCC
Q 041736          347 NFFTGESPVCL---------DLQGFDDKRNCLRDK  372 (500)
Q Consensus       347 N~l~g~~p~~~---------~L~~l~l~~N~l~~~  372 (500)
                      |+++|.++...         +|+.|++++|.+...
T Consensus       654 N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l  688 (876)
T 4ecn_A          654 NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF  688 (876)
T ss_dssp             SCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC
T ss_pred             CcCCCccccchhhhccccCCCcCEEEccCCcCCcc
Confidence            99988776432         577888888888743

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=3.7e-34  Score=283.55  Aligned_cols=269  Identities=17%  Similarity=0.226  Sum_probs=208.3

Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCC-----CCCCCCcCceecCCCC---CCCCcCcEEEEECCCCCCcccCchhhcCCCC
Q 041736           76 SAYIALQAWKKAIISDPWNLTSNWV-----GCYVCNYTGVFCAQAL---DNHSIRTVAGIDLNHGDIASYLPEELGLLAD  147 (500)
Q Consensus        76 ~~~~~l~~~~~~~~~~~~~~~~~w~-----~~~~c~~~gv~c~~~~---~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~  147 (500)
                      .++.||.+||..+..|+.+..+.|.     ..++|.|.|+.|....   ......+|+.|+|++|.+. .+|..+.++++
T Consensus        27 ~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~  105 (328)
T 4fcg_A           27 PYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSH  105 (328)
T ss_dssp             CHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTT
T ss_pred             hHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCC
Confidence            4678899999887677777777783     4678999999994210   0112468999999999998 67888999999


Q ss_pred             CCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhc----------CC
Q 041736          148 IALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF----------DK  217 (500)
Q Consensus       148 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~----------~~  217 (500)
                      |++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..+.++++|++|+|++|++.+.+|..+.          ..
T Consensus       106 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~  183 (328)
T 4fcg_A          106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV  183 (328)
T ss_dssp             CSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEEST
T ss_pred             CCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCC
Confidence            999999999999 89999999999999999999999 8899999999999999999999989988764          36


Q ss_pred             CCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEec
Q 041736          218 DLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDV  296 (500)
Q Consensus       218 ~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  296 (500)
                      +|++|++++|+++ .+|..++. .+|++|++++|.+++ ++..++.+.+ |++|+|++|++.+.+|..++.+++|++|+|
T Consensus       184 ~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~-L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLIL  260 (328)
T ss_dssp             TCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTT-CCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred             CCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCC-CCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence            7777777777776 55555443 567777777777773 5556677765 777777777777777777777777777777


Q ss_pred             cCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736          297 SYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       297 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      ++|++.+.+|..+.++++|++|+|++|.+.+.+|..+.++++|+.+++..|.+.
T Consensus       261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            777777777777777777777777777777777777777777777777665543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.4e-33  Score=277.65  Aligned_cols=232  Identities=23%  Similarity=0.409  Sum_probs=216.9

Q ss_pred             CCCcCcEEEEECCC-CCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCC
Q 041736          118 NHSIRTVAGIDLNH-GDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKL  196 (500)
Q Consensus       118 ~~~~~~l~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  196 (500)
                      ...+.+|+.|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|++++.+|..+..+++|
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  151 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence            44578899999995 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeccCCcCCCCCchhhcC-C-CCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEecc
Q 041736          197 KFLDLRYNEFEGKIPKALFD-K-DLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN  274 (500)
Q Consensus       197 ~~L~Ls~N~l~g~~p~~~~~-~-~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~  274 (500)
                      ++|+|++|+++|.+|..+.. . +|++|++++|++++.++..+...+|++|++++|.+++.++..|..+.+ |++|+|++
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~  230 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAK  230 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSC-CSEEECCS
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCC-CCEEECCC
Confidence            99999999999999988876 4 899999999999999999888877999999999999999999999997 99999999


Q ss_pred             CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc-CccC
Q 041736          275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF-FTGE  352 (500)
Q Consensus       275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~  352 (500)
                      |.+++.++. +..+++|++|+|++|+|++.+|..+..+++|++|+|++|.++|.+|.. ..+++|+++++++|. +.|.
T Consensus       231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            999986665 888999999999999999999999999999999999999999999986 889999999999998 5553

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=2.2e-30  Score=268.04  Aligned_cols=131  Identities=19%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736          242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA  321 (500)
Q Consensus       242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  321 (500)
                      |++|++++|.+.+.++..++.+.+ |++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|+
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  355 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS  355 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred             ceEEEecCccccccchhhcccCCC-CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence            333344444444334444444443 5555555555554444445555555555555555544444445555555555555


Q ss_pred             cCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCC
Q 041736          322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~  373 (500)
                      +|.+++..+..+..+++|++|++++|++++..+.    +..|+.|++++|.+.+..
T Consensus       356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            5555544444455555555555555555443332    123455555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.9e-30  Score=268.44  Aligned_cols=253  Identities=19%  Similarity=0.234  Sum_probs=165.7

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccC-CccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTL-PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      .+|++|||++|.+.+..+..|+++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45666666666666655555666666666666666555333 34455556666666666665555555555555555555


Q ss_pred             ccCCcCCCCCchh--hcC-CCCCeEEccCCCccCCCCCc-c-CCCCcceEEeccccccccCchhhhcc------------
Q 041736          201 LRYNEFEGKIPKA--LFD-KDLDAVFINNNRFSFELPDN-I-GNSPVSVLVLANNKFHGCLPLSFGNM------------  263 (500)
Q Consensus       201 Ls~N~l~g~~p~~--~~~-~~L~~L~l~~n~l~~~~p~~-~-~~~~L~~L~l~~n~l~~~~p~~l~~l------------  263 (500)
                      |++|++++.++..  +.. .+|++|++++|++++..+.. + ...+|++|++++|.+.+..+..+..+            
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            5555555433322  111 45555555555555444432 1 22344444444444444333322221            


Q ss_pred             ----------------------c---------------------------------------------------------
Q 041736          264 ----------------------S---------------------------------------------------------  264 (500)
Q Consensus       264 ----------------------~---------------------------------------------------------  264 (500)
                                            .                                                         
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence                                  1                                                         


Q ss_pred             -----ccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCC
Q 041736          265 -----RTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNL  339 (500)
Q Consensus       265 -----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L  339 (500)
                           .+|++|++++|.+.+.++..++.+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+..+++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence                 126667777777777777888899999999999999998888889999999999999999988888889999999


Q ss_pred             cEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCCC
Q 041736          340 RNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKPR  374 (500)
Q Consensus       340 ~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~~  374 (500)
                      ++|+|++|++++..+.    +.+|+.|++++|.+++.+.
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence            9999999999888665    3469999999999987654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=2.6e-31  Score=286.20  Aligned_cols=233  Identities=17%  Similarity=0.286  Sum_probs=196.2

Q ss_pred             CcccCchhhcCCCCCCEEEcCCCCCCcc-----------------CCcccc--CCCCCCEEeCcCCcCCCcCchhccCCC
Q 041736          134 IASYLPEELGLLADIALFHVNTNRFCGT-----------------LPRSFN--KLKLLFELDLSNNRFAGKFPYVVLGLP  194 (500)
Q Consensus       134 l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~  194 (500)
                      ++| +|..|+++++|++|+|++|.|++.                 +|..++  ++++|++|+|++|++.+.+|..+.+++
T Consensus       195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  273 (636)
T 4eco_A          195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP  273 (636)
T ss_dssp             EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred             Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence            335 788899999999999999999986                 999999  999999999999999999999999999


Q ss_pred             CCcEEeccCCc-CCC-CCchhhcC-------CCCCeEEccCCCccCCCCC--ccCC-CCcceEEeccccccccCchhhhc
Q 041736          195 KLKFLDLRYNE-FEG-KIPKALFD-------KDLDAVFINNNRFSFELPD--NIGN-SPVSVLVLANNKFHGCLPLSFGN  262 (500)
Q Consensus       195 ~L~~L~Ls~N~-l~g-~~p~~~~~-------~~L~~L~l~~n~l~~~~p~--~~~~-~~L~~L~l~~n~l~~~~p~~l~~  262 (500)
                      +|++|+|++|+ ++| .+|..+..       .+|++|++++|+++ .+|.  .++. .+|++|++++|.+.|.+| .|+.
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~  351 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS  351 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence            99999999998 998 88887765       79999999999999 7887  6655 689999999999998888 8888


Q ss_pred             ccccCcEEEeccCCCCCCCccccccCCC-ccEEeccCcccCCCChhhhhCCC--CCcEEEcccCCCCCCCchhhc-----
Q 041736          263 MSRTLNEVILTNNGLHSCLPEEIGLLKN-VTVFDVSYNKLMGELPDTIAEMT--SLQQLNVAHNMLSGTVPDSVC-----  334 (500)
Q Consensus       263 l~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~N~l~g~ip~~l~-----  334 (500)
                      +.+ |++|++++|.++ .+|..+..+++ |++|++++|+++ .+|..+..+.  +|++|+|++|.+++.+|..+.     
T Consensus       352 l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~  428 (636)
T 4eco_A          352 EIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT  428 (636)
T ss_dssp             EEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred             CCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence            886 999999999888 57888888888 888888888888 7777776654  788888888888887777777     


Q ss_pred             --CCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCC
Q 041736          335 --SLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       335 --~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~  372 (500)
                        .+.+|++|++++|++++....    +.+|+.|++++|.+...
T Consensus       429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i  472 (636)
T 4eco_A          429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI  472 (636)
T ss_dssp             CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred             cccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence              677888888888888743321    34677788888877743

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=6.9e-29  Score=258.46  Aligned_cols=252  Identities=17%  Similarity=0.164  Sum_probs=158.9

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.|||++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            45666777777776666666667777777777777776666666667777777777777766544455666667777777


Q ss_pred             cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      ++|++++..+..+.. .+|++|++++|.+++..+..+.. .+|+.|++++|.+++..+..|..+.+ |++|+|++|.+.+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~~  190 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNINA  190 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT-CCEEEEESCCCCE
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC-CcEEeCCCCcCcE
Confidence            777666444444333 56666666666666544444433 45666666666665444444555554 5555555555554


Q ss_pred             CCccccccCC------------------------CccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736          280 CLPEEIGLLK------------------------NVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS  335 (500)
Q Consensus       280 ~~p~~~~~l~------------------------~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~  335 (500)
                      ..+..+..++                        +|++|+|++|++++.....+..+++|++|+|++|.+++..+..+..
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence            4333333333                        4555555556666443456777777888888888777666666777


Q ss_pred             CCCCcEEEccCCcCccCCCCC----ccCCEEEcCCCCCCCCCC
Q 041736          336 LPNLRNFSFDYNFFTGESPVC----LDLQGFDDKRNCLRDKPR  374 (500)
Q Consensus       336 l~~L~~L~Ls~N~l~g~~p~~----~~L~~l~l~~N~l~~~~~  374 (500)
                      +++|++|+|++|++++..+..    ..|+.|++++|.+++...
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence            778888888888777765543    357788888887776543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.8e-29  Score=277.76  Aligned_cols=227  Identities=17%  Similarity=0.278  Sum_probs=178.2

Q ss_pred             CchhhcCCCCCCEEEcCCCCCCc-----------------cCCcccc--CCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736          138 LPEELGLLADIALFHVNTNRFCG-----------------TLPRSFN--KLKLLFELDLSNNRFAGKFPYVVLGLPKLKF  198 (500)
Q Consensus       138 ~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  198 (500)
                      +|..|+++++|++|+|++|.|++                 .+|..++  ++++|++|+|++|++.+.+|..|.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            77788999999999999999998                 3888877  9999999999999999999999999999999


Q ss_pred             EeccCCc-CCC-CCchhhcC--------CCCCeEEccCCCccCCCCC--ccCC-CCcceEEeccccccccCchhhhcccc
Q 041736          199 LDLRYNE-FEG-KIPKALFD--------KDLDAVFINNNRFSFELPD--NIGN-SPVSVLVLANNKFHGCLPLSFGNMSR  265 (500)
Q Consensus       199 L~Ls~N~-l~g-~~p~~~~~--------~~L~~L~l~~n~l~~~~p~--~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~  265 (500)
                      |+|++|+ ++| .+|..+..        ++|++|++++|+++ .+|.  .++. .+|+.|+|++|.+. .+| .|+.+.+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence            9999998 887 78876553        38999999999998 7887  5554 77999999999988 777 8888886


Q ss_pred             cCcEEEeccCCCCCCCccccccCCC-ccEEeccCcccCCCChhhhhCCCC--CcEEEcccCCCCCCCchhh---c--CCC
Q 041736          266 TLNEVILTNNGLHSCLPEEIGLLKN-VTVFDVSYNKLMGELPDTIAEMTS--LQQLNVAHNMLSGTVPDSV---C--SLP  337 (500)
Q Consensus       266 ~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~N~l~g~ip~~l---~--~l~  337 (500)
                       |++|+|++|.++ .+|..+..+++ |++|+|++|+++ .+|..+..+..  |+.|+|++|.+.|.+|...   .  .+.
T Consensus       597 -L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          597 -LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             -ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             -ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence             999999999988 58888888888 888999888888 77777665543  7778888887776554321   1  233


Q ss_pred             CCcEEEccCCcCccCCCC-----CccCCEEEcCCCCCCC
Q 041736          338 NLRNFSFDYNFFTGESPV-----CLDLQGFDDKRNCLRD  371 (500)
Q Consensus       338 ~L~~L~Ls~N~l~g~~p~-----~~~L~~l~l~~N~l~~  371 (500)
                      +|++|+|++|.++. +|.     +..|+.|++++|.+..
T Consensus       674 ~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L~~  711 (876)
T 4ecn_A          674 NASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLMTS  711 (876)
T ss_dssp             CEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCCSC
T ss_pred             CcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcCCc
Confidence            66666666666663 332     2356666666666653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=6.1e-28  Score=239.10  Aligned_cols=261  Identities=17%  Similarity=0.209  Sum_probs=218.0

Q ss_pred             CCCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcC
Q 041736          104 VCNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN  179 (500)
Q Consensus       104 ~c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  179 (500)
                      .|.++.+.|....    ...-..+++.|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            4678888885321    111235789999999999998887899999999999999999988899999999999999999


Q ss_pred             CcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccC--CCCCccCC-CCcceEEecccccccc
Q 041736          180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSF--ELPDNIGN-SPVSVLVLANNKFHGC  255 (500)
Q Consensus       180 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~--~~p~~~~~-~~L~~L~l~~n~l~~~  255 (500)
                      |+++ .++..+.  ++|++|++++|++++..+..+.. .+|++|++++|.+..  ..+..+.. .+|++|++++|.++. 
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  185 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-  185 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence            9998 5665554  79999999999999554444443 899999999999963  44544443 789999999999984 


Q ss_pred             CchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736          256 LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS  335 (500)
Q Consensus       256 ~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~  335 (500)
                      ++..+.  . +|++|++++|.+++..+..+..+++|++|+|++|.+++..+..+..+++|++|+|++|.++ .+|..+..
T Consensus       186 l~~~~~--~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          186 IPQGLP--P-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             CCSSCC--T-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             CCcccc--c-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence            565554  4 4999999999999988899999999999999999999877778999999999999999999 88889999


Q ss_pred             CCCCcEEEccCCcCccCCCCC----------ccCCEEEcCCCCCCCC
Q 041736          336 LPNLRNFSFDYNFFTGESPVC----------LDLQGFDDKRNCLRDK  372 (500)
Q Consensus       336 l~~L~~L~Ls~N~l~g~~p~~----------~~L~~l~l~~N~l~~~  372 (500)
                      +++|++|++++|+|++.....          ..+..+++++|.+...
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc
Confidence            999999999999998765542          2467899999987643

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=7.5e-29  Score=242.96  Aligned_cols=246  Identities=20%  Similarity=0.235  Sum_probs=181.3

Q ss_pred             CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCc--cCCccccCCCCCCEEeCc
Q 041736          105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCG--TLPRSFNKLKLLFELDLS  178 (500)
Q Consensus       105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls  178 (500)
                      |.|+++.|....    ......++++|+|++|.+.......|.++++|++|+|++|.++.  .++..+..+++|++|+|+
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            788888886421    11223578899999998886555567889999999999998873  335667788899999999


Q ss_pred             CCcCCCcCchhccCCCCCcEEeccCCcCCCCCc-hhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccc-
Q 041736          179 NNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIP-KALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHG-  254 (500)
Q Consensus       179 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p-~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~-  254 (500)
                      +|.++ .++..+..+++|++|++++|++++... ..+.. .+|++|++++|.+.+..+..+.. .+|++|++++|.+.+ 
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  165 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  165 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence            99888 566678888999999999998874433 12222 67888888888877666665543 667777777777775 


Q ss_pred             cCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhc
Q 041736          255 CLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC  334 (500)
Q Consensus       255 ~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~  334 (500)
                      .++..+..+.+ |++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+.
T Consensus       166 ~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          166 FLPDIFTELRN-LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             EECSCCTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             cchhHHhhCcC-CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence            46667777775 77777777777776677777777777777777777766666677777777777777777777777777


Q ss_pred             CCC-CCcEEEccCCcCccC
Q 041736          335 SLP-NLRNFSFDYNFFTGE  352 (500)
Q Consensus       335 ~l~-~L~~L~Ls~N~l~g~  352 (500)
                      .++ +|++|++++|.|++.
T Consensus       245 ~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCTTCCEEECTTCCEECS
T ss_pred             hhhccCCEEEccCCCeecc
Confidence            763 777777777777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.6e-28  Score=240.98  Aligned_cols=259  Identities=18%  Similarity=0.223  Sum_probs=219.8

Q ss_pred             CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC
Q 041736          105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN  180 (500)
Q Consensus       105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  180 (500)
                      |.|+.+.|....    ...-..+++.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            678888885321    1122367999999999999888889999999999999999999888999999999999999999


Q ss_pred             cCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCcc--CCCCCccCCCCcceEEeccccccccCc
Q 041736          181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFS--FELPDNIGNSPVSVLVLANNKFHGCLP  257 (500)
Q Consensus       181 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~--~~~p~~~~~~~L~~L~l~~n~l~~~~p  257 (500)
                      +++ .++..+.  ++|++|++++|++++..+..+.. .+|++|++++|.++  +..+..+...+|++|++++|.+++ ++
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~  188 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IP  188 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CC
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cC
Confidence            998 6666554  89999999999998444333433 89999999999996  356666666699999999999985 66


Q ss_pred             hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC
Q 041736          258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP  337 (500)
Q Consensus       258 ~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~  337 (500)
                      ..+.  . +|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.++ .+|..+..++
T Consensus       189 ~~~~--~-~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          189 KDLP--E-TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             SSSC--S-SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             cccc--C-CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence            6554  4 4999999999999988889999999999999999999888888999999999999999999 8888899999


Q ss_pred             CCcEEEccCCcCccCCCCC----------ccCCEEEcCCCCCCC
Q 041736          338 NLRNFSFDYNFFTGESPVC----------LDLQGFDDKRNCLRD  371 (500)
Q Consensus       338 ~L~~L~Ls~N~l~g~~p~~----------~~L~~l~l~~N~l~~  371 (500)
                      +|++|++++|++++.....          ..++.+++++|.+..
T Consensus       265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~  308 (332)
T 2ft3_A          265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY  308 (332)
T ss_dssp             TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred             cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence            9999999999998775542          247789999998763

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=3.3e-28  Score=253.38  Aligned_cols=243  Identities=20%  Similarity=0.228  Sum_probs=197.5

Q ss_pred             EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736          126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE  205 (500)
Q Consensus       126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  205 (500)
                      .++.++++++. +|..+  ..+|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus        15 ~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            34555555543 45443  3689999999999998888999999999999999999998889999999999999999999


Q ss_pred             CCCCCchhhcC--CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736          206 FEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP  282 (500)
Q Consensus       206 l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p  282 (500)
                      ++ .++...+.  .+|++|++++|++.+..+..+.. .+|++|++++|.+.+..+..|..+.+ |++|+|++|++++..+
T Consensus        92 l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~  169 (477)
T 2id5_A           92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPT  169 (477)
T ss_dssp             CC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTT-CCEEEEESCCCSSCCH
T ss_pred             CC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCC-CCEEECCCCcCcccCh
Confidence            98 55554433  89999999999999877776655 78999999999999888889999997 9999999999999777


Q ss_pred             cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc------------------------CCCCCCCchhhcCCCC
Q 041736          283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH------------------------NMLSGTVPDSVCSLPN  338 (500)
Q Consensus       283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~------------------------N~l~g~ip~~l~~l~~  338 (500)
                      ..+..+++|+.|+|++|.+++..+..+..+.+|++|+|++                        |.+++.....+..+++
T Consensus       170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence            7899999999999999999876666666666555555554                        5555333346777888


Q ss_pred             CcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCC
Q 041736          339 LRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       339 L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~  373 (500)
                      |++|+|++|.+++..+.    +..|+.|++++|.+.+..
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  288 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE  288 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceEC
Confidence            88888888888766553    346888888888887653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=3.8e-28  Score=246.22  Aligned_cols=248  Identities=17%  Similarity=0.198  Sum_probs=154.8

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+++.|+++++.+...-...|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+.++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            35566666666666554444456666666666666666655555666666666666666666655555666666666666


Q ss_pred             ccCCcCCCCCchhhc--CCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcc--------------
Q 041736          201 LRYNEFEGKIPKALF--DKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNM--------------  263 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~--~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l--------------  263 (500)
                      |++|+++ .++..++  ..+|++|++++|++++..+..+.. .+|++|++++|.+++.....+.++              
T Consensus       124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            6666666 4444432  256666666666666554444433 556666666666554311111111              


Q ss_pred             -----------------------cccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEc
Q 041736          264 -----------------------SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNV  320 (500)
Q Consensus       264 -----------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  320 (500)
                                             . +|++|++++|.+++.  ..+..+++|++|+|++|.+++..+..+..+++|++|+|
T Consensus       203 ~~~~L~~L~l~~n~l~~~~~~~~~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          203 IPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             CCSSCSEEECCSSCCCEEECCCCS-SCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CCCcceEEECCCCeeeeccccccc-cccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence                                   1 266666666666653  45677777888888888877766777777778888888


Q ss_pred             ccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCCCCC
Q 041736          321 AHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       321 ~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~~~~  373 (500)
                      ++|.+++ ++..+..+++|++|++++|++++....   +..|+.|++++|.+....
T Consensus       280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             CSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence            8887773 555566777788888888877744322   236778888888776653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=245.05  Aligned_cols=270  Identities=16%  Similarity=0.171  Sum_probs=218.7

Q ss_pred             CCCCCCcCceecCCCCC------CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCE
Q 041736          101 GCYVCNYTGVFCAQALD------NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFE  174 (500)
Q Consensus       101 ~~~~c~~~gv~c~~~~~------~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  174 (500)
                      ....|.|.++ |+....      ..-..+|+.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++
T Consensus        26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3456888877 543211      122358999999999999877778999999999999999999888888999999999


Q ss_pred             EeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCch--hhc-CCCCCeEEccCCC-ccCCCCCccCC-CCcceEEecc
Q 041736          175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPK--ALF-DKDLDAVFINNNR-FSFELPDNIGN-SPVSVLVLAN  249 (500)
Q Consensus       175 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~--~~~-~~~L~~L~l~~n~-l~~~~p~~~~~-~~L~~L~l~~  249 (500)
                      |+|++|++++..+..+.++++|++|+|++|+++ .++.  .+. .++|++|++++|+ +....+..+.. .+|++|++++
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            999999999666666999999999999999998 5655  332 3899999999995 55444555544 7899999999


Q ss_pred             ccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhh---hCCCCCcEEEcccCCCC
Q 041736          250 NKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTI---AEMTSLQQLNVAHNMLS  326 (500)
Q Consensus       250 n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~L~~L~L~~N~l~  326 (500)
                      |.+.+..+..+..+.+ |++|++++|.+.......+..+++|++|++++|++++.....+   .....++.++|+++.+.
T Consensus       184 n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~  262 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQN-VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT  262 (353)
T ss_dssp             TTCCEECTTTTTTCSE-EEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCC
T ss_pred             CCcCccCHHHHhcccc-CCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccccc
Confidence            9999988999999997 9999999999976444445678999999999999997554433   34677899999999988


Q ss_pred             C----CCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCC
Q 041736          327 G----TVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       327 g----~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~  373 (500)
                      +    .+|..+..+++|++|++++|+++.....    +.+|+.|++++|.+.+..
T Consensus       263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          263 DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            6    4678889999999999999999854433    336899999999988754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=5.2e-28  Score=258.79  Aligned_cols=248  Identities=17%  Similarity=0.194  Sum_probs=145.1

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.|++++|.+....+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..+..|.++++|++|+|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            44555555555555544444555556666666666555555555555556666666666655555555555556666666


Q ss_pred             cCCcCCCCCchhhc--CCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcc---------------
Q 041736          202 RYNEFEGKIPKALF--DKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNM---------------  263 (500)
Q Consensus       202 s~N~l~g~~p~~~~--~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l---------------  263 (500)
                      ++|.++ .++..++  ..+|++|++++|.+++..+..++. .+|++|++++|.+++.....+.++               
T Consensus       131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~  209 (597)
T 3oja_B          131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI  209 (597)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred             eCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence            666555 3333322  145555666655555554444433 455555555555543221111111               


Q ss_pred             ---------------------cccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc
Q 041736          264 ---------------------SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH  322 (500)
Q Consensus       264 ---------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  322 (500)
                                           ..+|++|+|++|.+++.  ..+..+++|++|+|++|.+++.++..++.+++|++|+|++
T Consensus       210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  287 (597)
T 3oja_B          210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN  287 (597)
T ss_dssp             CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred             CchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence                                 01256666666666652  5567777777777777777777777777777777777777


Q ss_pred             CCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCCCCC
Q 041736          323 NMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       323 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~~~~  373 (500)
                      |.+++ ++..+..+++|++|+|++|.+++....   +..|+.|++++|.+.+..
T Consensus       288 N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          288 NRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             SCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence            77774 455666677777777777777743222   235777777777776653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=5.9e-28  Score=239.00  Aligned_cols=223  Identities=16%  Similarity=0.171  Sum_probs=203.9

Q ss_pred             CCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeE
Q 041736          144 LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAV  222 (500)
Q Consensus       144 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L  222 (500)
                      ...++++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|+++ .+|..+.. .+|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            4689999999999998 88888999999999999999999 89999999999999999999999 88877665 899999


Q ss_pred             EccCCCccCCCCCccC----------CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCcc
Q 041736          223 FINNNRFSFELPDNIG----------NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVT  292 (500)
Q Consensus       223 ~l~~n~l~~~~p~~~~----------~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  292 (500)
                      ++++|++.+.+|..++          ..+|++|++++|.++ .+|..++.+.+ |++|+|++|.+++ ++..++.+++|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~N~l~~-l~~~l~~l~~L~  232 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPLSA-LGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT-CCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC-CCEEEccCCCCCc-CchhhccCCCCC
Confidence            9999999999998775          578999999999999 88999999997 9999999999997 667899999999


Q ss_pred             EEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc----cCCEEEcCCCC
Q 041736          293 VFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL----DLQGFDDKRNC  368 (500)
Q Consensus       293 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~----~L~~l~l~~N~  368 (500)
                      +|+|++|++.+.+|..++.+++|++|+|++|.+.+.+|..+.++++|++|+|++|.+.+.+|..+    .++.+++..|.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999743    57788887776


Q ss_pred             CCCC
Q 041736          369 LRDK  372 (500)
Q Consensus       369 l~~~  372 (500)
                      +...
T Consensus       313 ~~~l  316 (328)
T 4fcg_A          313 QAQL  316 (328)
T ss_dssp             SCC-
T ss_pred             HHHH
Confidence            6543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=5.3e-28  Score=259.30  Aligned_cols=251  Identities=17%  Similarity=0.140  Sum_probs=144.5

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCch-hccCCCCCcEE
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPY-VVLGLPKLKFL  199 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L  199 (500)
                      +.+|+.|+|++|.++ .+|..+..+++|++|++++|.+++..+..+.++++|++|+|++|.+.+.++. .+..+++|++|
T Consensus       277 l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  355 (606)
T 3t6q_A          277 FSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL  355 (606)
T ss_dssp             CTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred             ccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence            344555555555554 3444455555555555555555544444555555555555555555443332 24555555555


Q ss_pred             eccCCcCCCCC--chhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchh-hhcccccCcEEEecc
Q 041736          200 DLRYNEFEGKI--PKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLS-FGNMSRTLNEVILTN  274 (500)
Q Consensus       200 ~Ls~N~l~g~~--p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~-l~~l~~~L~~L~Ls~  274 (500)
                      ++++|++++..  +..+.. .+|++|++++|++.+..+..+.. .+|++|++++|.+.+..+.. +..+.+ |++|++++
T Consensus       356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~  434 (606)
T 3t6q_A          356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL-LKVLNLSH  434 (606)
T ss_dssp             ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT-CCEEECTT
T ss_pred             ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc-CCEEECCC
Confidence            55555554322  222222 45666666666655554444433 45666666666666554433 556664 66777777


Q ss_pred             CCCCCCCccccccCCCccEEeccCcccCCC---ChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736          275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGE---LPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG  351 (500)
Q Consensus       275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~---~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  351 (500)
                      |.+++..+..++.+++|++|+|++|++++.   .+..+..+++|++|+|++|.+++..+..+..+++|++|++++|++++
T Consensus       435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  514 (606)
T 3t6q_A          435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS  514 (606)
T ss_dssp             CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG
T ss_pred             CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc
Confidence            766666666666677777777777766652   22456666777777777777776666667777777777777777776


Q ss_pred             CCCCC----ccCCEEEcCCCCCCCCCC
Q 041736          352 ESPVC----LDLQGFDDKRNCLRDKPR  374 (500)
Q Consensus       352 ~~p~~----~~L~~l~l~~N~l~~~~~  374 (500)
                      ..+..    ..| .|++++|.+++..+
T Consensus       515 ~~~~~l~~l~~L-~L~L~~N~l~~~~~  540 (606)
T 3t6q_A          515 SSIEALSHLKGI-YLNLASNHISIILP  540 (606)
T ss_dssp             GGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred             CChhHhCccccc-EEECcCCcccccCH
Confidence            65432    245 67777777776543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=251.87  Aligned_cols=246  Identities=20%  Similarity=0.249  Sum_probs=145.9

Q ss_pred             CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC-cCchhccCCCCCcE
Q 041736          120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-KFPYVVLGLPKLKF  198 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~  198 (500)
                      .+.+|+.|+|++|.+++..+..|+++++|++|+|++|.++ .+|..  .+++|++|+|++|++++ .+|..++++++|++
T Consensus        43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~  119 (520)
T 2z7x_B           43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF  119 (520)
T ss_dssp             TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred             ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence            4456666666666666666666666666666666666666 44443  56666666666666665 35566666667777


Q ss_pred             EeccCCcCCCCCchhhcCCCC--CeEEccCCCc--cCCCCCccCC-----------------------------------
Q 041736          199 LDLRYNEFEGKIPKALFDKDL--DAVFINNNRF--SFELPDNIGN-----------------------------------  239 (500)
Q Consensus       199 L~Ls~N~l~g~~p~~~~~~~L--~~L~l~~n~l--~~~~p~~~~~-----------------------------------  239 (500)
                      |+|++|++++..  .....+|  ++|++++|++  .+..+..+..                                   
T Consensus       120 L~L~~n~l~~~~--~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l  197 (520)
T 2z7x_B          120 LGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI  197 (520)
T ss_dssp             EEEEESSCCGGG--GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCE
T ss_pred             EEecCcccchhh--ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccc
Confidence            777766665411  1111455  7777777776  4444443322                                   


Q ss_pred             -------------------------------------------------CCcceEEeccccccccCchhh----------
Q 041736          240 -------------------------------------------------SPVSVLVLANNKFHGCLPLSF----------  260 (500)
Q Consensus       240 -------------------------------------------------~~L~~L~l~~n~l~~~~p~~l----------  260 (500)
                                                                       .+|++|++++|.+.|.+|..+          
T Consensus       198 ~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~  277 (520)
T 2z7x_B          198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKA  277 (520)
T ss_dssp             EECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCE
T ss_pred             cccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCce
Confidence                                                             157777777777777666655          


Q ss_pred             -------------------------------------------hcccccCcEEEeccCCCCCCCccccccCCCccEEecc
Q 041736          261 -------------------------------------------GNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVS  297 (500)
Q Consensus       261 -------------------------------------------~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  297 (500)
                                                                 ..+.+ |++|++++|.+++.++..++.+++|++|+|+
T Consensus       278 L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  356 (520)
T 2z7x_B          278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNNLLTDTVFENCGHLTELETLILQ  356 (520)
T ss_dssp             EEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC-CCEEECCSSCCCTTTTTTCCCCSSCCEEECC
T ss_pred             eEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCc-ccEEEeECCccChhhhhhhccCCCCCEEEcc
Confidence                                                       23333 5556666666665555556666666666666


Q ss_pred             CcccCC--CChhhhhCCCCCcEEEcccCCCCCCCchh-hcCCCCCcEEEccCCcCccCCCCC--ccCCEEEcCCCCCCC
Q 041736          298 YNKLMG--ELPDTIAEMTSLQQLNVAHNMLSGTVPDS-VCSLPNLRNFSFDYNFFTGESPVC--LDLQGFDDKRNCLRD  371 (500)
Q Consensus       298 ~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~~p~~--~~L~~l~l~~N~l~~  371 (500)
                      +|++++  .++..+..+++|++|+|++|.+++.+|.. +..+++|++|++++|.+++.++..  ..|+.|++++|.++.
T Consensus       357 ~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~  435 (520)
T 2z7x_B          357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS  435 (520)
T ss_dssp             SSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC
T ss_pred             CCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc
Confidence            666654  34455556666666666666666544443 455566666666666665555443  256666666666653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=2.3e-27  Score=240.49  Aligned_cols=245  Identities=20%  Similarity=0.179  Sum_probs=164.2

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      ++|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..+..|.++++|++|+|++|+++......|.++++|++|+|
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence            44555555555555444445555555555555555555444444555555555555555555322223445555555555


Q ss_pred             cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCc--------------------------------------cCCCCc
Q 041736          202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDN--------------------------------------IGNSPV  242 (500)
Q Consensus       202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~--------------------------------------~~~~~L  242 (500)
                      ++|++++..+..+.. .+|++|++++|++++.-...                                      ....+|
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L  228 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  228 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSC
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccc
Confidence            555554333322222 44555555544443211000                                      011357


Q ss_pred             ceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc
Q 041736          243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH  322 (500)
Q Consensus       243 ~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  322 (500)
                      +.|++++|.+++.  ..+..+.+ |++|++++|.+++..+..+..+++|++|+|++|++++ ++..+..+++|++|+|++
T Consensus       229 ~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          229 TILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             CEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCS
T ss_pred             cEEECCCCCCccc--HHHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCC
Confidence            8888888888754  57888887 9999999999999889999999999999999999994 666778899999999999


Q ss_pred             CCCCCCCchhhcCCCCCcEEEccCCcCccCCCC-CccCCEEEcCCCCCCC
Q 041736          323 NMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-CLDLQGFDDKRNCLRD  371 (500)
Q Consensus       323 N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~L~~l~l~~N~l~~  371 (500)
                      |.++ .++..+..+++|++|++++|.+++.... ...|+.|++++|.+.+
T Consensus       305 n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          305 NHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred             Ccce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCccc
Confidence            9998 6777788899999999999999876433 4579999999998764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=2e-27  Score=250.11  Aligned_cols=107  Identities=21%  Similarity=0.260  Sum_probs=52.0

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+|+.|+|++|.+.+..+..|.++++|++|+|++|++++..+..|+++++|++|+|++|+++ .+|..  .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            34455555555555444444555555555555555555444445555555555555555554 33333  4455555555


Q ss_pred             cCCcCCC-CCchhhcC-CCCCeEEccCCCccC
Q 041736          202 RYNEFEG-KIPKALFD-KDLDAVFINNNRFSF  231 (500)
Q Consensus       202 s~N~l~g-~~p~~~~~-~~L~~L~l~~n~l~~  231 (500)
                      ++|++++ .+|..+.. .+|++|++++|++++
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch
Confidence            5555543 23333332 455555555555443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=9.7e-28  Score=254.12  Aligned_cols=174  Identities=18%  Similarity=0.247  Sum_probs=136.7

Q ss_pred             CCcCceecCCCC------CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCc
Q 041736          105 CNYTGVFCAQAL------DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLS  178 (500)
Q Consensus       105 c~~~gv~c~~~~------~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  178 (500)
                      |.|.|+ |+...      ...-..+|++|+|++|.+++..+..|+++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus         4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            777776 65321      01123579999999999999888899999999999999999998888899999999999999


Q ss_pred             CCcCCCcCchhccCCCCCcEEeccCCcCCC-CCchhhcC-CCCCeEEccCCCccCCCC-CccC-CCCcceEEeccccccc
Q 041736          179 NNRFAGKFPYVVLGLPKLKFLDLRYNEFEG-KIPKALFD-KDLDAVFINNNRFSFELP-DNIG-NSPVSVLVLANNKFHG  254 (500)
Q Consensus       179 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g-~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~~~-~~~L~~L~l~~n~l~~  254 (500)
                      +|++++..+..|.++++|++|+|++|++++ .++..+.. .+|++|++++|++.+.++ ..+. ..+|++|++++|.+.+
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            999998888889999999999999999985 23444433 789999999998665665 3343 3678999999999888


Q ss_pred             cCchhhhcccc-----------------------cCcEEEeccCCCCC
Q 041736          255 CLPLSFGNMSR-----------------------TLNEVILTNNGLHS  279 (500)
Q Consensus       255 ~~p~~l~~l~~-----------------------~L~~L~Ls~n~l~~  279 (500)
                      .++..++.+.+                       +|++|++++|++++
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             cChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccc
Confidence            77777655432                       26667777776665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=2.1e-27  Score=252.36  Aligned_cols=249  Identities=20%  Similarity=0.212  Sum_probs=158.4

Q ss_pred             CCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC-cCchhccCCCCCc
Q 041736          119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-KFPYVVLGLPKLK  197 (500)
Q Consensus       119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~  197 (500)
                      ..+.+|++|+|++|.+++..+..|+.+++|++|+|++|.|+ .+|..  .+++|++|+|++|++++ .+|..|.++++|+
T Consensus        73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~  149 (562)
T 3a79_B           73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT  149 (562)
T ss_dssp             TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred             ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCccc
Confidence            34556666666666666665666666666666666666666 44443  56666666666666664 2345666666666


Q ss_pred             EEeccCCcCCCCCchhhcCCCC--CeEEccCCCc--cCCCCCccCC----------------------------------
Q 041736          198 FLDLRYNEFEGKIPKALFDKDL--DAVFINNNRF--SFELPDNIGN----------------------------------  239 (500)
Q Consensus       198 ~L~Ls~N~l~g~~p~~~~~~~L--~~L~l~~n~l--~~~~p~~~~~----------------------------------  239 (500)
                      +|+|++|++++.....+  .+|  ++|++++|++  ++..+..+..                                  
T Consensus       150 ~L~L~~n~l~~~~~~~l--~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  227 (562)
T 3a79_B          150 FLGLSAAKFRQLDLLPV--AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN  227 (562)
T ss_dssp             EEEEECSBCCTTTTGGG--TTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred             EEecCCCccccCchhhh--hhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence            66666666654211111  334  6777777666  4443332211                                  


Q ss_pred             ------------------------------------------------CCcceEEeccccccccCchhh-----------
Q 041736          240 ------------------------------------------------SPVSVLVLANNKFHGCLPLSF-----------  260 (500)
Q Consensus       240 ------------------------------------------------~~L~~L~l~~n~l~~~~p~~l-----------  260 (500)
                                                                      .+|++|++++|.+.|.+|..+           
T Consensus       228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L  307 (562)
T 3a79_B          228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL  307 (562)
T ss_dssp             EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred             ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence                                                            156667777777776666544           


Q ss_pred             ------------------------------------------hcccccCcEEEeccCCCCCCCccccccCCCccEEeccC
Q 041736          261 ------------------------------------------GNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSY  298 (500)
Q Consensus       261 ------------------------------------------~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  298 (500)
                                                                ..+.+ |++|++++|.+++.++..++++++|++|+|++
T Consensus       308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  386 (562)
T 3a79_B          308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSS-FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR  386 (562)
T ss_dssp             EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC-CCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred             ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCC-ceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence                                                      34444 77777777777777777777777777777777


Q ss_pred             cccCC--CChhhhhCCCCCcEEEcccCCCCCCCch-hhcCCCCCcEEEccCCcCccCCCCCc--cCCEEEcCCCCCCCCC
Q 041736          299 NKLMG--ELPDTIAEMTSLQQLNVAHNMLSGTVPD-SVCSLPNLRNFSFDYNFFTGESPVCL--DLQGFDDKRNCLRDKP  373 (500)
Q Consensus       299 n~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~~p~~~--~L~~l~l~~N~l~~~~  373 (500)
                      |++++  .++..+..+++|++|+|++|.+++.++. .+..+++|++|++++|++++.++...  .|+.|++++|.++..+
T Consensus       387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip  466 (562)
T 3a79_B          387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP  466 (562)
T ss_dssp             SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCC
T ss_pred             CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccC
Confidence            77775  2345567777777777777777765554 36667777777777777777666543  6778888888776443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=4.1e-27  Score=252.36  Aligned_cols=249  Identities=16%  Similarity=0.176  Sum_probs=223.5

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR  202 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  202 (500)
                      +++.|++++|.+.+..+..|+.+++|++|+|++|.++ .+|..+.++++|++|+|++|++++..+..+..+++|++|+++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  333 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK  333 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence            7999999999999988888999999999999999998 788899999999999999999998888899999999999999


Q ss_pred             CCcCCCCCchhhcC--CCCCeEEccCCCccCCC--CCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736          203 YNEFEGKIPKALFD--KDLDAVFINNNRFSFEL--PDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL  277 (500)
Q Consensus       203 ~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~--p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l  277 (500)
                      +|.+.+.++...+.  .+|++|++++|++++..  +..++. .+|++|++++|.+.+..+..|..+.+ |++|++++|.+
T Consensus       334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l  412 (606)
T 3t6q_A          334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRL  412 (606)
T ss_dssp             SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT-CSEEECTTCCE
T ss_pred             CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc-CCeEECCCCcC
Confidence            99999888776443  89999999999998754  444444 78999999999999988999999997 99999999999


Q ss_pred             CCCCcc-ccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC---CchhhcCCCCCcEEEccCCcCccCC
Q 041736          278 HSCLPE-EIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT---VPDSVCSLPNLRNFSFDYNFFTGES  353 (500)
Q Consensus       278 ~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~---ip~~l~~l~~L~~L~Ls~N~l~g~~  353 (500)
                      .+..+. .+..+++|++|++++|.+++..+..+..+++|++|+|++|.+++.   .+..+..+++|++|++++|++++..
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            987654 489999999999999999998899999999999999999999873   2357889999999999999999887


Q ss_pred             CCC----ccCCEEEcCCCCCCCCC
Q 041736          354 PVC----LDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       354 p~~----~~L~~l~l~~N~l~~~~  373 (500)
                      +..    ..|+.|++++|.+.+..
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~  516 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSS  516 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGG
T ss_pred             hhhhccccCCCEEECCCCccCcCC
Confidence            653    47999999999998754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=2.4e-27  Score=253.71  Aligned_cols=246  Identities=21%  Similarity=0.192  Sum_probs=199.5

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++|+
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence            46788888888888887777888888888888888888877777788888888888888888855555668888888888


Q ss_pred             ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccC--------------------------------------CCC
Q 041736          201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIG--------------------------------------NSP  241 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~--------------------------------------~~~  241 (500)
                      |++|.+++..+..+.. .+|++|++++|.+++.....+.                                      ..+
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~  233 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE  233 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCC
Confidence            8888888666655544 6788888888877653211110                                      124


Q ss_pred             cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736          242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA  321 (500)
Q Consensus       242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  321 (500)
                      |+.|++++|.+++  +..++.+.. |++|+|++|.+++.++..|+.+++|++|+|++|.+++ ++..+..+++|+.|+|+
T Consensus       234 L~~L~L~~n~l~~--~~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls  309 (597)
T 3oja_B          234 LTILKLQHNNLTD--TAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS  309 (597)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECC
T ss_pred             CCEEECCCCCCCC--ChhhccCCC-CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECC
Confidence            6777777777775  367888887 9999999999999889999999999999999999995 67777889999999999


Q ss_pred             cCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC-CccCCEEEcCCCCCCC
Q 041736          322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-CLDLQGFDDKRNCLRD  371 (500)
Q Consensus       322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~L~~l~l~~N~l~~  371 (500)
                      +|.++ .+|..+..+++|++|+|++|.|++.... +..|+.|++++|.+.+
T Consensus       310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH
T ss_pred             CCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCC
Confidence            99999 7888889999999999999999876443 4479999999998764

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4e-27  Score=243.46  Aligned_cols=227  Identities=20%  Similarity=0.190  Sum_probs=166.9

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.|+|++|+|.+..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57889999999998888888999999999999999998888888899999999999999998776777888999999999


Q ss_pred             cCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCc-cC-CCCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736          202 RYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDN-IG-NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL  277 (500)
Q Consensus       202 s~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~-~~-~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l  277 (500)
                      ++|+++ .++...+.  .+|++|++++|+..+.++.. +. ..+|++|++++|++++. + .+..+.+ |++|+|++|.+
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~-L~~L~Ls~N~l  230 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVG-LEELEMSGNHF  230 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTT-CCEEECTTSCC
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccccccc-ccEEECcCCcC
Confidence            999988 44443332  67888888875544444432 22 25677777777777643 2 4556665 77777777777


Q ss_pred             CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736          278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      ++..+..|.++++|++|+|++|++++..+..+..+++|++|+|++|.|++..+..+..+++|++|+|++|.+...
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            776666777777777777777777766666677777777777777777755555566677777777777766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=4.5e-27  Score=249.84  Aligned_cols=105  Identities=20%  Similarity=0.330  Sum_probs=48.9

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR  202 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  202 (500)
                      +++.|+|++|.+.+..+..|+++++|++|+|++|.+++..+..|.++++|++|+|++|+++ .+|..  .+++|++|+|+
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            4444555555554444444455555555555555554444444445555555555555544 33333  44455555555


Q ss_pred             CCcCCC-CCchhhcC-CCCCeEEccCCCcc
Q 041736          203 YNEFEG-KIPKALFD-KDLDAVFINNNRFS  230 (500)
Q Consensus       203 ~N~l~g-~~p~~~~~-~~L~~L~l~~n~l~  230 (500)
                      +|++++ .++..+.. .+|++|++++|+++
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~  159 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFR  159 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccc
Confidence            554442 12222222 44555555555444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1.3e-26  Score=229.55  Aligned_cols=244  Identities=17%  Similarity=0.222  Sum_probs=206.4

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      ...+.+|+.|+|++|.+.+..+..|+.+++|++|+|++|.++ .++..+.  ++|++|++++|++++..+..+.++++|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~  148 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI  148 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcccc
Confidence            456789999999999999988999999999999999999998 5666554  7899999999999988888899999999


Q ss_pred             EEeccCCcCCC--CCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEecc
Q 041736          198 FLDLRYNEFEG--KIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN  274 (500)
Q Consensus       198 ~L~Ls~N~l~g--~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~  274 (500)
                      +|++++|.++.  ..+..+.. .+|++|++++|+++. ++..+. .+|++|++++|.+++..+..|..+.+ |++|++++
T Consensus       149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~  225 (330)
T 1xku_A          149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSF  225 (330)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTGGGTTCTT-CCEEECCS
T ss_pred             EEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHHHhcCCCC-CCEEECCC
Confidence            99999999963  34444433 899999999999984 555544 78999999999999888899999997 99999999


Q ss_pred             CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC------CCCCcEEEccCCc
Q 041736          275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS------LPNLRNFSFDYNF  348 (500)
Q Consensus       275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~------l~~L~~L~Ls~N~  348 (500)
                      |.+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.|++.....|+.      ...|+.|++++|.
T Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence            9999988888999999999999999999 88889999999999999999999765555543      3788999999999


Q ss_pred             Ccc--CCCC----CccCCEEEcCCCC
Q 041736          349 FTG--ESPV----CLDLQGFDDKRNC  368 (500)
Q Consensus       349 l~g--~~p~----~~~L~~l~l~~N~  368 (500)
                      +..  ..+.    +..++.+++++|.
T Consensus       305 ~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          305 VQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccCccccccccceeEEEecccC
Confidence            863  2222    3357888888873

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=7e-27  Score=250.53  Aligned_cols=92  Identities=20%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC-cCchhccCCCCC
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG-KFPYVVLGLPKL  196 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L  196 (500)
                      ...+.+|+.|+|++|.+.+..|..|+++.+|++|+|++|.+++..+..|+++.+|++|+|++|++++ .+|..+.++++|
T Consensus        76 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L  155 (606)
T 3vq2_A           76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL  155 (606)
T ss_dssp             TTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred             hhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence            4566788888888888888778888888888888888888886666778888888888888888875 568888888899


Q ss_pred             cEEeccCCcCCCC
Q 041736          197 KFLDLRYNEFEGK  209 (500)
Q Consensus       197 ~~L~Ls~N~l~g~  209 (500)
                      ++|+|++|++++.
T Consensus       156 ~~L~Ls~n~l~~~  168 (606)
T 3vq2_A          156 VHVDLSYNYIQTI  168 (606)
T ss_dssp             CEEECCSSCCCEE
T ss_pred             CEEEccCCcceec
Confidence            9888888887653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=1.1e-26  Score=230.36  Aligned_cols=244  Identities=17%  Similarity=0.226  Sum_probs=207.2

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      ...+.+|+.|+|++|.+++..+..|+.+++|++|+|++|.++ .++..+.  ++|++|+|++|++++..+..+.++++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCC
Confidence            556789999999999999988999999999999999999998 6666554  7999999999999977777899999999


Q ss_pred             EEeccCCcCCC--CCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccC
Q 041736          198 FLDLRYNEFEG--KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN  275 (500)
Q Consensus       198 ~L~Ls~N~l~g--~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n  275 (500)
                      +|++++|.++.  ..+..+...+|++|++++|++++ ++..+. .+|++|++++|.+++..+..|..+.+ |++|++++|
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~-L~~L~L~~N  227 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELEDLLRYSK-LYRLGLGHN  227 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTT-CSCCBCCSS
T ss_pred             EEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHHHhcCCCC-CCEEECCCC
Confidence            99999999962  44444444599999999999985 565554 68999999999999888889999997 999999999


Q ss_pred             CCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC------CCCCcEEEccCCcC
Q 041736          276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS------LPNLRNFSFDYNFF  349 (500)
Q Consensus       276 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~------l~~L~~L~Ls~N~l  349 (500)
                      .+++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|.+++..+..+..      ..+|+.|++++|.+
T Consensus       228 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence            999988889999999999999999999 88889999999999999999999765565654      36789999999998


Q ss_pred             c--cCCCC----CccCCEEEcCCCC
Q 041736          350 T--GESPV----CLDLQGFDDKRNC  368 (500)
Q Consensus       350 ~--g~~p~----~~~L~~l~l~~N~  368 (500)
                      .  +..+.    +..|+.+++++|.
T Consensus       307 ~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          307 PYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccCcccccccchhhhhhccccc
Confidence            7  33333    3468888888774

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=257.82  Aligned_cols=254  Identities=20%  Similarity=0.227  Sum_probs=166.9

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCcc--ccCCCCCCEEeCcCCcCCCcCc-hhccCCC
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRS--FNKLKLLFELDLSNNRFAGKFP-YVVLGLP  194 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~  194 (500)
                      ...+.+|+.|+|++|.+.+..+..|+++.+|++|+|++|.+++.++..  |.++++|++|+|++|.+++..+ ..|.+++
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~  148 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN  148 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred             hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence            455677888888888888777778888888888888888887766554  7788888888888888876544 4677888


Q ss_pred             CCcEEeccCCcCCCCCchhhcC---CCCCeEEccCCCccCCCCCccCC-------CCcceEEeccccccccCchhhhcc-
Q 041736          195 KLKFLDLRYNEFEGKIPKALFD---KDLDAVFINNNRFSFELPDNIGN-------SPVSVLVLANNKFHGCLPLSFGNM-  263 (500)
Q Consensus       195 ~L~~L~Ls~N~l~g~~p~~~~~---~~L~~L~l~~n~l~~~~p~~~~~-------~~L~~L~l~~n~l~~~~p~~l~~l-  263 (500)
                      +|++|+|++|.+++..+..+..   .+|+.|+++.|.+.+..+..++.       ..|++|++++|.+++.++..+... 
T Consensus       149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  228 (844)
T 3j0a_A          149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI  228 (844)
T ss_dssp             SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred             CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence            8888888888887666655432   56666666666666555443322       236666666666555444333221 


Q ss_pred             ------------------------------------cccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChh
Q 041736          264 ------------------------------------SRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD  307 (500)
Q Consensus       264 ------------------------------------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  307 (500)
                                                          ..+|++|++++|.+.+..+..+..+++|+.|+|++|++++..+.
T Consensus       229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  308 (844)
T 3j0a_A          229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE  308 (844)
T ss_dssp             CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred             CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence                                                01366666666666666666666666666666666666666666


Q ss_pred             hhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCC
Q 041736          308 TIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRD  371 (500)
Q Consensus       308 ~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~  371 (500)
                      .+..+++|++|+|++|.+++..+..+..+++|++|++++|++++..+.    +.+|+.|++++|.+.+
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            666666666666666666655566666666666666666666555443    2346666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.6e-27  Score=229.57  Aligned_cols=244  Identities=20%  Similarity=0.251  Sum_probs=209.4

Q ss_pred             EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCc--CchhccCCCCCcEEecc
Q 041736          125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGK--FPYVVLGLPKLKFLDLR  202 (500)
Q Consensus       125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~Ls  202 (500)
                      +.+++++++++. +|..+  .++|++|+|++|.++......|.++++|++|+|++|+++..  .+..+..+++|++|+|+
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            478999998866 45433  36899999999999955455689999999999999999833  36677789999999999


Q ss_pred             CCcCCCCCchhhcC-CCCCeEEccCCCccCCCC-Ccc-CCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          203 YNEFEGKIPKALFD-KDLDAVFINNNRFSFELP-DNI-GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       203 ~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~~-~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      +|.++ .++..+.. .+|++|++++|++++... ..+ ...+|++|++++|.+.+..+..+..+.+ |++|++++|.+.+
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQE  164 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTTCEEGG
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCCCcccc
Confidence            99998 56655444 899999999999986544 233 3478999999999999988889999997 9999999999987


Q ss_pred             -CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC--
Q 041736          280 -CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC--  356 (500)
Q Consensus       280 -~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~--  356 (500)
                       .++..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|++++..+..  
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence             57889999999999999999999888899999999999999999999877778999999999999999999987652  


Q ss_pred             ---ccCCEEEcCCCCCCCCC
Q 041736          357 ---LDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       357 ---~~L~~l~l~~N~l~~~~  373 (500)
                         ..|+.|++++|.+.+..
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSG
T ss_pred             hhhccCCEEEccCCCeeccc
Confidence               26899999999998753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.4e-26  Score=238.53  Aligned_cols=226  Identities=21%  Similarity=0.225  Sum_probs=166.2

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.|+|++|.+.+..+..|.++++|++|+|++|.|++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            56788888888888887788888888888888888888777788888888888888888888666667888888888888


Q ss_pred             cCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCC-ccC-CCCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736          202 RYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPD-NIG-NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL  277 (500)
Q Consensus       202 s~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~-~~~-~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l  277 (500)
                      ++|+++ .++...+.  .+|++|++++|+..+.++. .+. ..+|++|++++|.++ .++ .+..+.+ |++|+|++|.+
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~-L~~L~Ls~N~l  219 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIK-LDELDLSGNHL  219 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSS-CCEEECTTSCC
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcc-cCEEECCCCcc
Confidence            888887 44443332  6788888877554444443 222 356777777777776 333 3666665 77777777777


Q ss_pred             CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736          278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG  351 (500)
Q Consensus       278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  351 (500)
                      ++..+..|.++++|++|+|++|+|++..+..+..+++|++|+|++|.|++..+..+..+++|++|+|++|.+..
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            77667777777777777777777776666667777777777777777776555666677777777777777654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=1.3e-26  Score=257.53  Aligned_cols=253  Identities=17%  Similarity=0.187  Sum_probs=173.9

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccC-CccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTL-PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      .+++.|||++|.|++..+..|.++++|++|+|++|.+.+.+ +..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            56777788887777777777777777777777777555555 56677777777777777777766677777777777777


Q ss_pred             ccCCcCCCCCchh--hcC-CCCCeEEccCCCccCCCC-CccC-CCCcceEEeccccccccCchhhhcc--cc--------
Q 041736          201 LRYNEFEGKIPKA--LFD-KDLDAVFINNNRFSFELP-DNIG-NSPVSVLVLANNKFHGCLPLSFGNM--SR--------  265 (500)
Q Consensus       201 Ls~N~l~g~~p~~--~~~-~~L~~L~l~~n~l~~~~p-~~~~-~~~L~~L~l~~n~l~~~~p~~l~~l--~~--------  265 (500)
                      |++|.+++.++..  +.. .+|++|++++|.+++..+ ..++ ..+|++|++++|.+.+..+..+..+  .+        
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            7777777655543  222 677777777777765543 2333 3667777777777766666655554  32        


Q ss_pred             ---------------------cCcEEEeccCCCCCCCcccccc-------------------------------------
Q 041736          266 ---------------------TLNEVILTNNGLHSCLPEEIGL-------------------------------------  287 (500)
Q Consensus       266 ---------------------~L~~L~Ls~n~l~~~~p~~~~~-------------------------------------  287 (500)
                                           +|++|++++|.+++.++..+..                                     
T Consensus       184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l  263 (844)
T 3j0a_A          184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL  263 (844)
T ss_dssp             SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred             CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence                                 1455555555544433322211                                     


Q ss_pred             -CCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEE
Q 041736          288 -LKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGF  362 (500)
Q Consensus       288 -l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l  362 (500)
                       ..+|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..+.    ..+|+.|
T Consensus       264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred             ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence             14577777777777766667777788888888888888877777888888888888888888776554    3368888


Q ss_pred             EcCCCCCCCCCC
Q 041736          363 DDKRNCLRDKPR  374 (500)
Q Consensus       363 ~l~~N~l~~~~~  374 (500)
                      ++++|.+.+...
T Consensus       344 ~L~~N~i~~~~~  355 (844)
T 3j0a_A          344 DLQKNHIAIIQD  355 (844)
T ss_dssp             ECCSCCCCCCCS
T ss_pred             ECCCCCCCccCh
Confidence            888888876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3e-26  Score=222.09  Aligned_cols=224  Identities=18%  Similarity=0.211  Sum_probs=139.8

Q ss_pred             EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736          126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE  205 (500)
Q Consensus       126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  205 (500)
                      .++.++++++. +|..  ..++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|.
T Consensus        15 ~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            44555555443 2322  13455566666665555444555555566666666665555445555555566666666554


Q ss_pred             -CCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736          206 -FEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP  282 (500)
Q Consensus       206 -l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p  282 (500)
                       ++...+..+.. .+|++|++++|++++..+..+.. .+|++|++++|.+.+..+..|..+.+ |++|+|++|++++..+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCEECT
T ss_pred             CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-ccEEECCCCcccccCH
Confidence             44222332222 45555555555555544444433 56777777777776555555677775 7888888887777555


Q ss_pred             cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC
Q 041736          283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES  353 (500)
Q Consensus       283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~  353 (500)
                      ..+..+++|++|+|++|.+++..+..+..+++|++|+|++|.+++..+..+..+++|++|++++|.+.+..
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            56777778888888888877776777777778888888888877666666777778888888888776543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=4e-26  Score=248.04  Aligned_cols=251  Identities=20%  Similarity=0.196  Sum_probs=153.9

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.|+|++|.+.+..+..|+++++|++|+|++|.+++..+..|+++++|++|+|++|++++..+..|.++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            46777777777777766666777777777777777777766777777777777777777777444445777777777777


Q ss_pred             cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhc--ccccCcEEEeccCCC
Q 041736          202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGN--MSRTLNEVILTNNGL  277 (500)
Q Consensus       202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~--l~~~L~~L~Ls~n~l  277 (500)
                      ++|++++..+..+.. .+|++|++++|++++..+..++. .+|++|++++|.+++..+..+..  +.+ |++|++++|.+
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS-LKKLELSSNQI  183 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE-ESEEECTTCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc-ccEEECCCCcc
Confidence            777776444344433 67777777777776665555433 55666666666666555444432  233 66666666655


Q ss_pred             CCCCcc---------------------------------------------------ccccCCC--ccEEeccCcccCCC
Q 041736          278 HSCLPE---------------------------------------------------EIGLLKN--VTVFDVSYNKLMGE  304 (500)
Q Consensus       278 ~~~~p~---------------------------------------------------~~~~l~~--L~~L~Ls~n~l~~~  304 (500)
                      ++..+.                                                   ++..++.  |++|+|++|++++.
T Consensus       184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~  263 (680)
T 1ziw_A          184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV  263 (680)
T ss_dssp             CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred             cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence            554443                                                   3333332  55555555555555


Q ss_pred             ChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC-----CC--------CCccCCEEEcCCCCCCC
Q 041736          305 LPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE-----SP--------VCLDLQGFDDKRNCLRD  371 (500)
Q Consensus       305 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-----~p--------~~~~L~~l~l~~N~l~~  371 (500)
                      .+..++.+++|++|+|++|.+++..+..+..+++|++|++++|...+.     +|        .+.+|+.|++++|.+.+
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence            555555555566666666655555555555555666666655544331     11        23457777777777776


Q ss_pred             CC
Q 041736          372 KP  373 (500)
Q Consensus       372 ~~  373 (500)
                      ..
T Consensus       344 ~~  345 (680)
T 1ziw_A          344 IK  345 (680)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.8e-28  Score=240.99  Aligned_cols=242  Identities=19%  Similarity=0.168  Sum_probs=198.1

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCC-CccCCcccc-------CCCCCCEEeCcCCcCCCcCchhc--
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRF-CGTLPRSFN-------KLKLLFELDLSNNRFAGKFPYVV--  190 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~Ls~n~l~~~~p~~l--  190 (500)
                      ..+++.|++++|.+  .+|..+...  |++|+|++|.+ .+.++..+.       ++++|++|+|++|++++.+|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            35788899999999  677766654  89999999999 456776665       79999999999999998888876  


Q ss_pred             cCCCCCcEEeccCCcCCCCCchhhcC------CCCCeEEccCCCccCCCCCccCC-CCcceEEecccccccc--Cchhh-
Q 041736          191 LGLPKLKFLDLRYNEFEGKIPKALFD------KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGC--LPLSF-  260 (500)
Q Consensus       191 ~~l~~L~~L~Ls~N~l~g~~p~~~~~------~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~--~p~~l-  260 (500)
                      ..+++|++|+|++|++++. +..+..      .+|++|++++|++++..+..++. .+|++|++++|++.+.  ++..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            8899999999999999976 654432      78999999999999877676655 7899999999998765  33444 


Q ss_pred             -hcccccCcEEEeccCCCCCC--Cc-cccccCCCccEEeccCcccCCCCh-hhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736          261 -GNMSRTLNEVILTNNGLHSC--LP-EEIGLLKNVTVFDVSYNKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCS  335 (500)
Q Consensus       261 -~~l~~~L~~L~Ls~n~l~~~--~p-~~~~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~l~~  335 (500)
                       +.+.+ |++|+|++|++++.  ++ ..+..+++|++|+|++|++++.++ ..+..+++|++|+|++|.|+ .+|..+. 
T Consensus       197 ~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          197 PLKFPT-LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             TTSCTT-CCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             hccCCC-CCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence             77886 99999999999842  22 344678999999999999998764 45667899999999999998 7888776 


Q ss_pred             CCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCCCC
Q 041736          336 LPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       336 l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~~~  372 (500)
                       ++|++|||++|+|++. |.   ...|+.|++++|.+++.
T Consensus       274 -~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             -SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred             -CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence             7999999999999987 43   33688999999998763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=2e-26  Score=250.33  Aligned_cols=252  Identities=17%  Similarity=0.232  Sum_probs=195.0

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|+|++|.+.+..+..|+++++|++|+|++|.+++..+..|+++++|++|+|++|.+++..+..+.++++|++|+
T Consensus        72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            45677777777777665445677777777777777777766666677777777777777777776666777777777777


Q ss_pred             ccCCcCCCCCchhhc---CCCCCeEEccCCCccCCCCCccCC----------------------------CCcceEEecc
Q 041736          201 LRYNEFEGKIPKALF---DKDLDAVFINNNRFSFELPDNIGN----------------------------SPVSVLVLAN  249 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~---~~~L~~L~l~~n~l~~~~p~~~~~----------------------------~~L~~L~l~~  249 (500)
                      +++|++++..+..+.   ..+|++|++++|++++..+..+..                            .+|+.|++++
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~  231 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN  231 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred             ccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccC
Confidence            777777755554332   267888888888777665543321                            4577888888


Q ss_pred             ccccccCchhhhcccc-cCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC-
Q 041736          250 NKFHGCLPLSFGNMSR-TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG-  327 (500)
Q Consensus       250 n~l~~~~p~~l~~l~~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g-  327 (500)
                      |.+.+..+..|..+.. +|++|++++|++++..+..++.+++|++|+|++|++++..+..+..+.+|++|+|++|...+ 
T Consensus       232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~  311 (680)
T 1ziw_A          232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS  311 (680)
T ss_dssp             SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-
T ss_pred             CcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcc
Confidence            8888877778877642 39999999999999888899999999999999999999999999999999999999887664 


Q ss_pred             ----CCch----hhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCC
Q 041736          328 ----TVPD----SVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       328 ----~ip~----~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~  372 (500)
                          .+|.    .+..+++|++|++++|.+++..+.    +.+|+.|++++|.+...
T Consensus       312 ~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  368 (680)
T 1ziw_A          312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR  368 (680)
T ss_dssp             -----CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC
T ss_pred             cccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh
Confidence                2333    678899999999999999987665    44799999999987554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=1.7e-26  Score=244.59  Aligned_cols=109  Identities=17%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             cccccCcEEEeccCCCCCCCc---cccccCCCccEEeccCcccCCCCh--hhhhCCCCCcEEEcccCCCCCCCchhhcCC
Q 041736          262 NMSRTLNEVILTNNGLHSCLP---EEIGLLKNVTVFDVSYNKLMGELP--DTIAEMTSLQQLNVAHNMLSGTVPDSVCSL  336 (500)
Q Consensus       262 ~l~~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l  336 (500)
                      .+.+ |++|++++|.+++.++   ..++.+++|++|+|++|++++..+  ..+..+++|++|+|++|.++ .+|..+..+
T Consensus       332 ~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          332 HLKS-LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             HCTT-CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             cCcc-ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence            3443 6666666666655442   224555666666666666653221  33556666666666666666 455555566


Q ss_pred             CCCcEEEccCCcCccCCCCC-ccCCEEEcCCCCCCCC
Q 041736          337 PNLRNFSFDYNFFTGESPVC-LDLQGFDDKRNCLRDK  372 (500)
Q Consensus       337 ~~L~~L~Ls~N~l~g~~p~~-~~L~~l~l~~N~l~~~  372 (500)
                      ++|++|++++|.+++..... ..|+.|++++|.+++.
T Consensus       410 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~  446 (549)
T 2z81_A          410 EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF  446 (549)
T ss_dssp             TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC
T ss_pred             ccccEEECCCCCcccccchhcCCceEEECCCCChhhh
Confidence            66666666666654322111 2455555555555543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.7e-26  Score=234.85  Aligned_cols=240  Identities=17%  Similarity=0.170  Sum_probs=203.3

Q ss_pred             EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736          126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE  205 (500)
Q Consensus       126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  205 (500)
                      .++.++.+++. +|..+.  .+|++|+|++|.|++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus        58 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           58 KVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            34555555544 554443  689999999999998889999999999999999999998888999999999999999999


Q ss_pred             CCCCCchhhcC--CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCc-hhhhcccccCcEEEeccCCCCCCC
Q 041736          206 FEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLP-LSFGNMSRTLNEVILTNNGLHSCL  281 (500)
Q Consensus       206 l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~l~~l~~~L~~L~Ls~n~l~~~~  281 (500)
                      ++ .++...+.  .+|++|++++|+++...+..+.. .+|++|++++|...+.++ ..|..+.+ |++|+|++|++++. 
T Consensus       135 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~l~~~-  211 (452)
T 3zyi_A          135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCNIKDM-  211 (452)
T ss_dssp             CS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT-CCEEECTTSCCSSC-
T ss_pred             CC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC-CCEEECCCCccccc-
Confidence            99 45444333  89999999999998654444543 789999999965544554 46888887 99999999999984 


Q ss_pred             ccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC----c
Q 041736          282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC----L  357 (500)
Q Consensus       282 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~----~  357 (500)
                      + .+..+++|++|+|++|+|++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..    .
T Consensus       212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  290 (452)
T 3zyi_A          212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR  290 (452)
T ss_dssp             C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred             c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence            4 5889999999999999999988999999999999999999999888899999999999999999999776653    3


Q ss_pred             cCCEEEcCCCCCCCC
Q 041736          358 DLQGFDDKRNCLRDK  372 (500)
Q Consensus       358 ~L~~l~l~~N~l~~~  372 (500)
                      .|+.|++++|.+...
T Consensus       291 ~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          291 YLVELHLHHNPWNCD  305 (452)
T ss_dssp             TCCEEECCSSCEECS
T ss_pred             CCCEEEccCCCcCCC
Confidence            699999999977543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=8.1e-26  Score=232.87  Aligned_cols=240  Identities=19%  Similarity=0.205  Sum_probs=204.3

Q ss_pred             EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736          125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN  204 (500)
Q Consensus       125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  204 (500)
                      ..++.++++++. +|..+.  .++++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        46 ~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           46 SKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             CEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            345666666654 555443  78999999999999888899999999999999999999888889999999999999999


Q ss_pred             cCCCCCchh-hcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCc-hhhhcccccCcEEEeccCCCCCC
Q 041736          205 EFEGKIPKA-LFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLP-LSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       205 ~l~g~~p~~-~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      +++ .++.. +.. .+|++|++++|+++...+..+.. .+|++|++++|...+.++ ..|.++.+ |++|+|++|+++. 
T Consensus       123 ~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~-L~~L~L~~n~l~~-  199 (440)
T 3zyj_A          123 RLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCNLRE-  199 (440)
T ss_dssp             CCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSS-CCEEECTTSCCSS-
T ss_pred             cCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccc-cCeecCCCCcCcc-
Confidence            999 45543 333 89999999999998655545544 789999999965544554 47888887 9999999999997 


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC----
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC----  356 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~----  356 (500)
                      ++ .+..+++|++|+|++|+|++..+..+.++++|++|+|++|.+++..+..|..+++|++|+|++|+|++..+..    
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            44 5889999999999999999888999999999999999999999888889999999999999999999876653    


Q ss_pred             ccCCEEEcCCCCCCC
Q 041736          357 LDLQGFDDKRNCLRD  371 (500)
Q Consensus       357 ~~L~~l~l~~N~l~~  371 (500)
                      ..|+.|++++|.+..
T Consensus       279 ~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          279 HHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTCCEEECCSSCEEC
T ss_pred             cCCCEEEcCCCCccC
Confidence            468999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.8e-26  Score=223.63  Aligned_cols=233  Identities=18%  Similarity=0.211  Sum_probs=199.7

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc-CCCcCchhccCCCCCcEE
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR-FAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L  199 (500)
                      ..+++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|. +....+..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4689999999999999888889999999999999999998889999999999999999997 876668899999999999


Q ss_pred             eccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736          200 DLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL  277 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l  277 (500)
                      +|++|++++..+..+.. .+|++|++++|++++..+..++. .+|++|++++|.+++..+..|..+.+ |++|++++|.+
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc-cCEEECCCCcc
Confidence            99999999766655554 89999999999999766665544 78999999999999776677999987 99999999999


Q ss_pred             CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736          278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV  355 (500)
Q Consensus       278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~  355 (500)
                      ++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+....... .....++.+..+.|.+.+..|.
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~  266 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ  266 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence            9988999999999999999999999877788999999999999999998654321 0111244455667777766664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.3e-25  Score=216.03  Aligned_cols=220  Identities=20%  Similarity=0.293  Sum_probs=170.6

Q ss_pred             CCCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc
Q 041736          102 CYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR  181 (500)
Q Consensus       102 ~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  181 (500)
                      .++|.|.|+.|.+.      .+++.+++++++++. +|..+.  .+|++|+|++|.+++..+..|.++++|++|+|++|+
T Consensus         2 ~~~C~~~~~~C~c~------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   72 (270)
T 2o6q_A            2 EALCKKDGGVCSCN------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK   72 (270)
T ss_dssp             CCCBGGGTCSBEEE------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred             CccCCCCCCCCEeC------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence            37899999999763      346789999999986 565443  689999999999997777789999999999999999


Q ss_pred             CCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhh
Q 041736          182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFG  261 (500)
Q Consensus       182 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~  261 (500)
                      ++...+..|.++++|++|+|++|++++ ++...+.                     ...+|++|++++|.+++..+..|.
T Consensus        73 l~~i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~---------------------~l~~L~~L~l~~n~l~~~~~~~~~  130 (270)
T 2o6q_A           73 LQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFD---------------------QLVNLAELRLDRNQLKSLPPRVFD  130 (270)
T ss_dssp             CSCCCTTTTSSCTTCCEEECCSSCCCC-CCTTTTT---------------------TCSSCCEEECCSSCCCCCCTTTTT
T ss_pred             cCeeChhhhcCCCCCCEEECCCCcCCc-CCHhHcc---------------------cccCCCEEECCCCccCeeCHHHhC
Confidence            996666677889999999999999883 3322211                     113455555555555555555667


Q ss_pred             cccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcE
Q 041736          262 NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRN  341 (500)
Q Consensus       262 ~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~  341 (500)
                      .+.+ |++|+|++|.+++..+..+..+++|++|+|++|++++..+..+..+++|++|+|++|.+++..+..+..+++|++
T Consensus       131 ~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  209 (270)
T 2o6q_A          131 SLTK-LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM  209 (270)
T ss_dssp             TCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCcC-CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence            7776 888888888888866666888888888888888888766666888888888888888888655566788888888


Q ss_pred             EEccCCcCccCC
Q 041736          342 FSFDYNFFTGES  353 (500)
Q Consensus       342 L~Ls~N~l~g~~  353 (500)
                      |+|++|.+...-
T Consensus       210 L~l~~N~~~c~c  221 (270)
T 2o6q_A          210 LQLQENPWDCTC  221 (270)
T ss_dssp             EECCSSCBCCSS
T ss_pred             EEecCCCeeCCC
Confidence            888888876553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=1.3e-25  Score=241.30  Aligned_cols=131  Identities=16%  Similarity=0.156  Sum_probs=84.2

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .++++|||++|.|++..+..|.++++|++|+|++|.|++..+.+|.++++|++|+|++|+|++..+..|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            35777777777777766667777777777777777777666667777777777777777777655566777777777777


Q ss_pred             cCCcCCCCCchhhcC-CCCCeEEccCCCccC-CCCCccCC-CCcceEEeccccc
Q 041736          202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSF-ELPDNIGN-SPVSVLVLANNKF  252 (500)
Q Consensus       202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l  252 (500)
                      ++|++++..+..+.. .+|++|++++|++++ .++..++. .+|++|++++|.+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            777776432222222 566666666666543 23333332 4455555554443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=1.5e-25  Score=238.27  Aligned_cols=131  Identities=20%  Similarity=0.220  Sum_probs=66.3

Q ss_pred             CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc-cccccCCCccEEeccCcccCCCChhhhhCCCCCcEE
Q 041736          240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP-EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQL  318 (500)
Q Consensus       240 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  318 (500)
                      .+|++|++++|.+.+..+ .+..+.+ |++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus       373 ~~L~~L~l~~n~l~~~~~-~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          373 TSLKYLDLSFNGVITMSS-NFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             SCCCEEECCSCSEEEEEE-EEETCTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             CccCEEECCCCccccccc-cccccCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            345666666666654322 2555554 5555555555554433 344555555555555555555445555555555555


Q ss_pred             EcccCCCC-CCCchhhcCCCCCcEEEccCCcCccCCCCC----ccCCEEEcCCCCCCCC
Q 041736          319 NVAHNMLS-GTVPDSVCSLPNLRNFSFDYNFFTGESPVC----LDLQGFDDKRNCLRDK  372 (500)
Q Consensus       319 ~L~~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~----~~L~~l~l~~N~l~~~  372 (500)
                      +|++|.++ +.+|..+..+++|++|++++|++++..+..    .+|+.|++++|.+++.
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence            55555554 344444555555555555555555443321    2345555555555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=3.5e-26  Score=245.13  Aligned_cols=246  Identities=18%  Similarity=0.168  Sum_probs=120.3

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCc--------------------cccCCCCCCEEeCcCC
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPR--------------------SFNKLKLLFELDLSNN  180 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--------------------~l~~l~~L~~L~Ls~n  180 (500)
                      +.+++.|++++|.+.. ++ .+..+++|++|++++|.+ +.+|.                    .+..+++|++|+|++|
T Consensus       284 l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n  360 (606)
T 3vq2_A          284 LANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN  360 (606)
T ss_dssp             GTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS
T ss_pred             CCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC
Confidence            3445555555555533 22 444555555555555555 34442                    2344445555555555


Q ss_pred             cCCCc--CchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCC-CccC-CCCcceEEecccccccc
Q 041736          181 RFAGK--FPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELP-DNIG-NSPVSVLVLANNKFHGC  255 (500)
Q Consensus       181 ~l~~~--~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p-~~~~-~~~L~~L~l~~n~l~~~  255 (500)
                      ++++.  ++..+..+++|++|+|++|.+++ ++..+.. .+|++|++++|++.+..+ ..+. ..+|++|++++|.+.+.
T Consensus       361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  439 (606)
T 3vq2_A          361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID  439 (606)
T ss_dssp             CEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             ccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence            54433  24444455555555555555442 2222222 455555555555554443 2222 24455555555555555


Q ss_pred             CchhhhcccccCcEEEeccCCCCC-CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhc
Q 041736          256 LPLSFGNMSRTLNEVILTNNGLHS-CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC  334 (500)
Q Consensus       256 ~p~~l~~l~~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~  334 (500)
                      .+..+..+.+ |++|++++|.+++ .++..++.+++|++|+|++|++++..+..+..+++|++|+|++|.+++.+|..+.
T Consensus       440 ~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  518 (606)
T 3vq2_A          440 FDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN  518 (606)
T ss_dssp             CTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred             chhhhcCCCC-CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence            5555555554 5555555555554 2444555555555555555555555555555555555555555555555455555


Q ss_pred             CCCCCcEEEccCCcCccCCCC---Cc-cCCEEEcCCCCCCC
Q 041736          335 SLPNLRNFSFDYNFFTGESPV---CL-DLQGFDDKRNCLRD  371 (500)
Q Consensus       335 ~l~~L~~L~Ls~N~l~g~~p~---~~-~L~~l~l~~N~l~~  371 (500)
                      .+++|++|++++|+|+.....   .. .|+.|++++|.+.+
T Consensus       519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence            555555555555555522221   11 25555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=5.3e-27  Score=230.54  Aligned_cols=222  Identities=18%  Similarity=0.211  Sum_probs=187.6

Q ss_pred             EEEEECCCCCC-cccCchhhc-------CCCCCCEEEcCCCCCCccCCccc--cCCCCCCEEeCcCCcCCCcCchhccCC
Q 041736          124 VAGIDLNHGDI-ASYLPEELG-------LLADIALFHVNTNRFCGTLPRSF--NKLKLLFELDLSNNRFAGKFPYVVLGL  193 (500)
Q Consensus       124 l~~L~L~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p~~l~~l  193 (500)
                      ++.|+|++|.+ .+.++..+.       ++++|++|+|++|.+++.+|..+  ..+++|++|+|++|++++. +..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            78899999999 556777665       79999999999999999999886  8999999999999999976 7777776


Q ss_pred             -----CCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCC--CCcc---CCCCcceEEeccccccc--cCc-hh
Q 041736          194 -----PKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFEL--PDNI---GNSPVSVLVLANNKFHG--CLP-LS  259 (500)
Q Consensus       194 -----~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~--p~~~---~~~~L~~L~l~~n~l~~--~~p-~~  259 (500)
                           ++|++|+|++|++++..+..+.. ++|++|++++|++.+.+  +..+   ...+|++|++++|.+++  .++ ..
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  223 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL  223 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence                 89999999999999766666655 89999999999987642  2222   34789999999999983  223 33


Q ss_pred             hhcccccCcEEEeccCCCCCCCc-cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCC
Q 041736          260 FGNMSRTLNEVILTNNGLHSCLP-EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN  338 (500)
Q Consensus       260 l~~l~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~  338 (500)
                      +..+.+ |++|+|++|.+++.++ ..+..+++|++|+|++|+|+ .+|..+.  ++|++|+|++|+|++. |. +..+++
T Consensus       224 ~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~  297 (312)
T 1wwl_A          224 AAARVQ-LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ  297 (312)
T ss_dssp             HHTTCC-CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred             HhcCCC-CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence            346676 9999999999999775 56677899999999999999 7888776  8999999999999966 65 899999


Q ss_pred             CcEEEccCCcCccC
Q 041736          339 LRNFSFDYNFFTGE  352 (500)
Q Consensus       339 L~~L~Ls~N~l~g~  352 (500)
                      |++|++++|.|++.
T Consensus       298 L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          298 VGNLSLKGNPFLDS  311 (312)
T ss_dssp             EEEEECTTCTTTCC
T ss_pred             CCEEeccCCCCCCC
Confidence            99999999999864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=6.5e-25  Score=235.91  Aligned_cols=113  Identities=18%  Similarity=0.217  Sum_probs=83.6

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      +.++++|+.|||++|.|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|+
T Consensus        72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~  151 (635)
T 4g8a_A           72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  151 (635)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence            45667888888888888877777788888888888888888866666788888888888888888866666677888888


Q ss_pred             EEeccCCcCCC-CCchhhcC-CCCCeEEccCCCcc
Q 041736          198 FLDLRYNEFEG-KIPKALFD-KDLDAVFINNNRFS  230 (500)
Q Consensus       198 ~L~Ls~N~l~g-~~p~~~~~-~~L~~L~l~~n~l~  230 (500)
                      +|+|++|.+++ .++..+.. .+|++|++++|+++
T Consensus       152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             eeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            88888887764 23444333 56666666666543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.1e-24  Score=217.02  Aligned_cols=241  Identities=17%  Similarity=0.264  Sum_probs=178.1

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      ...+.+|+.|+|++|.+.+.  ..+..+++|++|++++|.+++. +. +..+++|++|++++|.....++ .+..+++|+
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~  158 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLN  158 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCC
T ss_pred             hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCc
Confidence            44678899999999998773  4688999999999999999854 33 8889999999999996664444 378888999


Q ss_pred             EEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCC
Q 041736          198 FLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGL  277 (500)
Q Consensus       198 ~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l  277 (500)
                      +|++++|.+.+ ++......+|++|++++|.+.+. +......+|++|++++|.+.+..+  +..+.+ |++|++++|.+
T Consensus       159 ~L~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l  233 (347)
T 4fmz_A          159 YLTVTESKVKD-VTPIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKI  233 (347)
T ss_dssp             EEECCSSCCCC-CGGGGGCTTCSEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCC
T ss_pred             EEEecCCCcCC-chhhccCCCCCEEEccCCccccc-ccccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCcc
Confidence            99999998874 33333347888888888888753 333344678888888887775433  666765 88888888888


Q ss_pred             CCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC--
Q 041736          278 HSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV--  355 (500)
Q Consensus       278 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~--  355 (500)
                      ++..+  +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+.  
T Consensus       234 ~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l  307 (347)
T 4fmz_A          234 TDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI  307 (347)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred             CCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence            76433  7777888888888888774 3 3577777888888888877753  3467777888888888877766543  


Q ss_pred             --CccCCEEEcCCCCCCCCCC
Q 041736          356 --CLDLQGFDDKRNCLRDKPR  374 (500)
Q Consensus       356 --~~~L~~l~l~~N~l~~~~~  374 (500)
                        +.+|+.|++++|.+.+..+
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG
T ss_pred             hccccCCEEEccCCccccccC
Confidence              4467788888887776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=4.4e-26  Score=224.50  Aligned_cols=214  Identities=20%  Similarity=0.232  Sum_probs=95.6

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR  202 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  202 (500)
                      +|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..+  +..+++|++|+|++|++++.     ...++|++|+++
T Consensus        35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~  107 (317)
T 3o53_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAA  107 (317)
T ss_dssp             GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECC
T ss_pred             CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-----cCCCCcCEEECC
Confidence            44555555555554444445555555555555555543332  44455555555555554421     122445555555


Q ss_pred             CCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhh-cccccCcEEEeccCCCCCC
Q 041736          203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFG-NMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       203 ~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~Ls~n~l~~~  280 (500)
                      +|++++..+..  ..+|++|++++|++++..+..++. .+|++|++++|.+.+..+..+. .+.. |++|+|++|.+++.
T Consensus       108 ~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~-L~~L~L~~N~l~~~  184 (317)
T 3o53_A          108 NNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LEHLNLQYNFIYDV  184 (317)
T ss_dssp             SSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CCEEECTTSCCCEE
T ss_pred             CCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc-CCEEECCCCcCccc
Confidence            55544222211  134455555555544433323222 3444555555544444333332 3333 45555555544442


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                       + ....+++|++|+|++|++++ ++..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++
T Consensus       185 -~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          185 -K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             -E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             -c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence             1 12234445555555554442 2223444444555555555444 33444444444555555554444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.5e-25  Score=233.44  Aligned_cols=216  Identities=19%  Similarity=0.209  Sum_probs=168.4

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      ..+|+.|+|++|.+.+..+..|+.+++|++|+|++|.+++..+  |..+++|++|+|++|.+++..     ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence            3578899999999988878888899999999999999886655  888889999999999888432     237889999


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhh-cccccCcEEEeccCCCC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFG-NMSRTLNEVILTNNGLH  278 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~Ls~n~l~  278 (500)
                      |++|.+++..+..  ..+|++|++++|.+++..+..++. .+|++|+|++|.+++.++..+. .+.. |++|+|++|.++
T Consensus       106 L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~-L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT-LEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT-CCEEECTTSCCC
T ss_pred             CcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc-ccEEecCCCccc
Confidence            9999888654432  267888888888888776666554 6788888888888887777776 5665 888888888888


Q ss_pred             CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736          279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      +.  ..+..+++|++|+|++|.|++.. ..+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.+.
T Consensus       183 ~~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DV--KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EE--ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cc--cccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            75  23445788888888888888544 447788888888888888884 6777778888888888888877

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.7e-25  Score=220.23  Aligned_cols=237  Identities=17%  Similarity=0.148  Sum_probs=202.4

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.++++.+.+.......+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+  +..+++|++|+|
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            457788899988877666677788899999999999998888899999999999999999997655  899999999999


Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL  281 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~  281 (500)
                      ++|++++ ++   ...+|++|++++|++++..+..  ..+|++|++++|.+++..+..++.+.+ |++|++++|.+++..
T Consensus        88 s~n~l~~-l~---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           88 NNNYVQE-LL---VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVN  160 (317)
T ss_dssp             CSSEEEE-EE---ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEEE
T ss_pred             cCCcccc-cc---CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCccc
Confidence            9999883 33   2289999999999998755443  367999999999999887888999987 999999999999977


Q ss_pred             cccc-ccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---Cc
Q 041736          282 PEEI-GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---CL  357 (500)
Q Consensus       282 p~~~-~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~  357 (500)
                      +..+ ..+++|++|+|++|.+++. + ....+++|++|+|++|.+++ ++..+..+++|++|++++|++++....   ..
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~  237 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCC
Confidence            7766 4799999999999999854 3 33458999999999999995 555688999999999999999864332   34


Q ss_pred             cCCEEEcCCCCCC
Q 041736          358 DLQGFDDKRNCLR  370 (500)
Q Consensus       358 ~L~~l~l~~N~l~  370 (500)
                      .|+.|++++|.+.
T Consensus       238 ~L~~L~l~~N~~~  250 (317)
T 3o53_A          238 NLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCEEECTTCCCB
T ss_pred             CCCEEEccCCCcc
Confidence            7999999999987

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=8e-24  Score=210.81  Aligned_cols=238  Identities=17%  Similarity=0.226  Sum_probs=188.0

Q ss_pred             CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      .+.+|+.|++++|.+++. +. +..+++|++|++++|.+++ + ..+.++++|++|+|++|++++. +. +..+++|++|
T Consensus        64 ~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L  137 (347)
T 4fmz_A           64 YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSL  137 (347)
T ss_dssp             GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEE
T ss_pred             hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEE
Confidence            457899999999988764 33 8889999999999998885 4 3688899999999999998854 33 8889999999


Q ss_pred             eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      ++++|.....++......+|++|++++|.+.+..+ .....+|++|++++|.+.+..+  +..+.+ |++|++++|.+.+
T Consensus       138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~~  213 (347)
T 4fmz_A          138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTS-LHYFTAYVNQITD  213 (347)
T ss_dssp             ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTT-CCEEECCSSCCCC
T ss_pred             ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCc-cceeecccCCCCC
Confidence            99999766566654444889999999998875433 3344789999999998885433  777776 9999999999887


Q ss_pred             CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC--CCCc
Q 041736          280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES--PVCL  357 (500)
Q Consensus       280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~--p~~~  357 (500)
                      ..+  +..+++|++|++++|++++. +. +..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..  ..+.
T Consensus       214 ~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~l~  287 (347)
T 4fmz_A          214 ITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISVLNNLS  287 (347)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             Cch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChhhcCCC
Confidence            543  78889999999999999854 33 88889999999999988853  46888899999999999888752  1244


Q ss_pred             cCCEEEcCCCCCCCCC
Q 041736          358 DLQGFDDKRNCLRDKP  373 (500)
Q Consensus       358 ~L~~l~l~~N~l~~~~  373 (500)
                      +|+.|++++|.+.+..
T Consensus       288 ~L~~L~L~~n~l~~~~  303 (347)
T 4fmz_A          288 QLNSLFLNNNQLGNED  303 (347)
T ss_dssp             TCSEEECCSSCCCGGG
T ss_pred             CCCEEECcCCcCCCcC
Confidence            7889999999887643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=6.8e-24  Score=219.17  Aligned_cols=225  Identities=17%  Similarity=0.157  Sum_probs=122.5

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|++++|.+++. + .++.+++|++|+|++|.+++. +  ++.+++|++|+|++|++++. +  +.++++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence            34566666666666553 3 456666666666666666643 2  55666666666666666643 2  55666666666


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      +++|++++ ++ .....+|++|++++|++++. + .-...+|++|++++|...+.+  .++.+.+ |++|++++|++++ 
T Consensus       113 L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~--~~~~l~~-L~~L~ls~n~l~~-  184 (457)
T 3bz5_A          113 CDTNKLTK-LD-VSQNPLLTYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL--DVTPQTQ-LTTLDCSFNKITE-  184 (457)
T ss_dssp             CCSSCCSC-CC-CTTCTTCCEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC--CCTTCTT-CCEEECCSSCCCC-
T ss_pred             CCCCcCCe-ec-CCCCCcCCEEECCCCcccee-c-cccCCcCCEEECCCCCccccc--ccccCCc-CCEEECCCCccce-
Confidence            66666654 32 11125666666666666542 1 222245666666666444444  3455554 6666666666655 


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC-CccC
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV-CLDL  359 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~L  359 (500)
                      ++  ++.+++|+.|++++|++++.   .++.+++|++|+|++|++++ +|  +..+++|++|++++|++++.... +..|
T Consensus       185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L  256 (457)
T 3bz5_A          185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKL  256 (457)
T ss_dssp             CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred             ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence            22  55556666666666666543   25555666666666666654 33  55555666666666666554332 2234


Q ss_pred             CEEEcCCCCC
Q 041736          360 QGFDDKRNCL  369 (500)
Q Consensus       360 ~~l~l~~N~l  369 (500)
                      +.|++++|.+
T Consensus       257 ~~L~l~~n~L  266 (457)
T 3bz5_A          257 TTLHCIQTDL  266 (457)
T ss_dssp             CEEECTTCCC
T ss_pred             CEEeccCCCC
Confidence            4444443333

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=6.3e-25  Score=219.53  Aligned_cols=234  Identities=18%  Similarity=0.195  Sum_probs=194.5

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc-hhccCCCCC
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP-YVVLGLPKL  196 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L  196 (500)
                      ...+.+|+.|+|++|.+++..+..|+++++|++|+|++|.+++..+..|.++++|++|+|++|++++... ..+..+++|
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L  151 (353)
T 2z80_A           72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL  151 (353)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred             hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCC
Confidence            4567899999999999999888899999999999999999996655569999999999999999995433 478999999


Q ss_pred             cEEeccCCc-CCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchh-hhcccccCcEEEe
Q 041736          197 KFLDLRYNE-FEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLS-FGNMSRTLNEVIL  272 (500)
Q Consensus       197 ~~L~Ls~N~-l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~-l~~l~~~L~~L~L  272 (500)
                      ++|++++|+ +.+..+..+.. .+|++|++++|++++..+..++. .+|++|++++|.+.. ++.. +..+.+ |++|++
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~-L~~L~L  229 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSS-VECLEL  229 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTT-EEEEEE
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhccc-ccEEEC
Confidence            999999995 55333334433 79999999999999887877766 679999999999864 4444 445665 999999


Q ss_pred             ccCCCCCCCccccc---cCCCccEEeccCcccCC----CChhhhhCCCCCcEEEcccCCCCCCCchh-hcCCCCCcEEEc
Q 041736          273 TNNGLHSCLPEEIG---LLKNVTVFDVSYNKLMG----ELPDTIAEMTSLQQLNVAHNMLSGTVPDS-VCSLPNLRNFSF  344 (500)
Q Consensus       273 s~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~g~ip~~-l~~l~~L~~L~L  344 (500)
                      ++|.+++.....+.   ....++.++|+++.+++    .+|..+..+++|++|+|++|.++ .+|.. +..+++|++|++
T Consensus       230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L  308 (353)
T 2z80_A          230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWL  308 (353)
T ss_dssp             ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEe
Confidence            99999986554433   46678889999998876    47788999999999999999999 66665 589999999999


Q ss_pred             cCCcCccCCC
Q 041736          345 DYNFFTGESP  354 (500)
Q Consensus       345 s~N~l~g~~p  354 (500)
                      ++|.+++..+
T Consensus       309 ~~N~~~~~~~  318 (353)
T 2z80_A          309 HTNPWDCSCP  318 (353)
T ss_dssp             CSSCBCCCHH
T ss_pred             eCCCccCcCC
Confidence            9999998765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.7e-24  Score=207.32  Aligned_cols=209  Identities=17%  Similarity=0.181  Sum_probs=144.6

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35677777777776666556777777777777777777655556777777777777777777666666777777777777


Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccc-cCchhhhcccccCcEEEeccCCCCCC
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHG-CLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~-~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      ++|++++..+..+.                      ...+|++|++++|.+.+ .++..+..+.+ |++|++++|++++.
T Consensus       108 ~~n~l~~~~~~~~~----------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          108 VETNLASLENFPIG----------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSI  164 (276)
T ss_dssp             TTSCCCCSTTCCCT----------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEECCSSCCCEE
T ss_pred             CCCCccccCchhcc----------------------cCCCCCEEECcCCccceecCchhhccCCC-CCEEECCCCCCCcC
Confidence            77766632221111                      12456666666666654 25677777776 88888888888877


Q ss_pred             CccccccCCCcc----EEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCC
Q 041736          281 LPEEIGLLKNVT----VFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP  354 (500)
Q Consensus       281 ~p~~~~~l~~L~----~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p  354 (500)
                      .+..+..+.+|+    +|++++|.+++..+..+ ...+|++|+|++|.+++..+..+..+++|++|++++|.+++..+
T Consensus       165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            666777666666    78888888885444433 34578888888888886655667788888888888888877644

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=2.5e-24  Score=228.76  Aligned_cols=245  Identities=17%  Similarity=0.170  Sum_probs=159.9

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+++.|||++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            45777788888777776667777788888888888777666677777778888888888777666677777778888888


Q ss_pred             cCCcCCCCCchhhcC-CCCCeEEccCCCccC-CCCCccCC-CCcceEEeccccccccCchhhhcccccC----cEEEecc
Q 041736          202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSF-ELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTL----NEVILTN  274 (500)
Q Consensus       202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~-~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L----~~L~Ls~  274 (500)
                      ++|++++..+..+.. .+|++|++++|.+++ .+|..++. .+|++|++++|.+.+..+..++.+.+ |    ++|++++
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTT
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhc-cchhhhhcccCC
Confidence            877777332222222 677777887777765 45665553 66777777777777666666666665 6    6666666


Q ss_pred             CCCCCCCccc----------------------------------------------------------------------
Q 041736          275 NGLHSCLPEE----------------------------------------------------------------------  284 (500)
Q Consensus       275 n~l~~~~p~~----------------------------------------------------------------------  284 (500)
                      |.+.+..+..                                                                      
T Consensus       187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            6665544333                                                                      


Q ss_pred             -----------cccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC
Q 041736          285 -----------IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES  353 (500)
Q Consensus       285 -----------~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~  353 (500)
                                 +..+++|++|++++|.++ .++..+..+ +|++|++++|.+. .+|.  ..+++|++|++++|.+.+..
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~  341 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF  341 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence                       334455555555555555 344555555 5555555555555 3433  34556666666666665555


Q ss_pred             CC--CccCCEEEcCCCCCCCC
Q 041736          354 PV--CLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       354 p~--~~~L~~l~l~~N~l~~~  372 (500)
                      +.  +.+|+.|++++|.+.+.
T Consensus       342 ~~~~~~~L~~L~l~~n~l~~~  362 (570)
T 2z63_A          342 SEVDLPSLEFLDLSRNGLSFK  362 (570)
T ss_dssp             CCCBCTTCCEEECCSSCCBEE
T ss_pred             ccccCCCCCEEeCcCCccCcc
Confidence            43  34677888888877643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.5e-25  Score=230.74  Aligned_cols=215  Identities=19%  Similarity=0.158  Sum_probs=187.1

Q ss_pred             CCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEE
Q 041736          144 LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVF  223 (500)
Q Consensus       144 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~  223 (500)
                      .+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+  +..+++|++|+|++|.+++ ++.   ..+|++|+
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~---~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLV---GPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EEE---CTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CCC---CCCcCEEE
Confidence            33489999999999998888999999999999999999997666  8999999999999999984 332   28999999


Q ss_pred             ccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccc-cCCCccEEeccCcccC
Q 041736          224 INNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIG-LLKNVTVFDVSYNKLM  302 (500)
Q Consensus       224 l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~n~l~  302 (500)
                      +++|.+++..+..+  .+|+.|++++|.+++..+..++.+.+ |++|+|++|.+++.++..+. .+++|++|+|++|.|+
T Consensus       106 L~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          106 AANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             CCSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            99999997655433  67999999999999988889999997 99999999999998888876 7999999999999999


Q ss_pred             CCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC---CccCCEEEcCCCCCC
Q 041736          303 GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV---CLDLQGFDDKRNCLR  370 (500)
Q Consensus       303 ~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~---~~~L~~l~l~~N~l~  370 (500)
                      +. + .+..+++|++|+|++|.|++. +..+..+++|+.|+|++|.|++....   +..|+.|++++|.+.
T Consensus       183 ~~-~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             cc-c-ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            65 3 344689999999999999964 44588999999999999999975433   346899999999887

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1e-23  Score=218.81  Aligned_cols=80  Identities=24%  Similarity=0.362  Sum_probs=38.3

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+|+.|||++|.+.+..+  +.++.+|++|++++|.+++..+  +.++++|++|+|++|.+++..+  +.++++|++|++
T Consensus        68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred             cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence            445555555555544322  4555555555555555543322  4555555555555555543211  444444444444


Q ss_pred             cCCcCC
Q 041736          202 RYNEFE  207 (500)
Q Consensus       202 s~N~l~  207 (500)
                      ++|.++
T Consensus       142 ~~n~l~  147 (466)
T 1o6v_A          142 SSNTIS  147 (466)
T ss_dssp             EEEEEC
T ss_pred             CCCccC
Confidence            444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=9.6e-24  Score=218.97  Aligned_cols=239  Identities=23%  Similarity=0.297  Sum_probs=165.5

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCch---------
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPY---------  188 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---------  188 (500)
                      ...+.+|+.|++++|.+.+..+  ++++++|++|+|++|.+++.. . +.++++|++|+|++|.+++. +.         
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDI-SALSGLTSLQQ  160 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCC-GGGTTCTTCSE
T ss_pred             hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCC-hhhccCCcccE
Confidence            4567899999999999988654  999999999999999998653 3 89999999999999998853 22         


Q ss_pred             -----------hccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCc
Q 041736          189 -----------VVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLP  257 (500)
Q Consensus       189 -----------~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p  257 (500)
                                 .+.++++|++|++++|.+++ ++......+|++|++++|.+++..+ .....+|+.|++++|.+.+.  
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--  236 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--  236 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--
Confidence                       24455666666666666653 3332223667777777776665433 22235677777777776642  


Q ss_pred             hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC
Q 041736          258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP  337 (500)
Q Consensus       258 ~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~  337 (500)
                      ..+..+.+ |++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|+|++|.+++..+  +..++
T Consensus       237 ~~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~  309 (466)
T 1o6v_A          237 GTLASLTN-LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK  309 (466)
T ss_dssp             GGGGGCTT-CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred             hhhhcCCC-CCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCC
Confidence            35666665 7777777777776433  6677777777777777774332  6677777777777777775433  66777


Q ss_pred             CCcEEEccCCcCccCCCC--CccCCEEEcCCCCCCCC
Q 041736          338 NLRNFSFDYNFFTGESPV--CLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       338 ~L~~L~Ls~N~l~g~~p~--~~~L~~l~l~~N~l~~~  372 (500)
                      +|++|++++|++++..+.  +.+|+.|++++|.+.+.
T Consensus       310 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          310 NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             TCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             CCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence            777777777777766542  34677777777777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=5.8e-24  Score=219.71  Aligned_cols=187  Identities=18%  Similarity=0.238  Sum_probs=108.5

Q ss_pred             CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      .+.+|+.|+|++|.+++. +  ++.+++|++|+|++|.+++. +  ++++++|++|+|++|++++ ++  +..+++|++|
T Consensus        62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L  132 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL  132 (457)
T ss_dssp             GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred             ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence            456677777777777663 2  66677777777777777653 2  6667777777777777764 33  6666777777


Q ss_pred             eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      ++++|++++ ++ .....+|++|++++|+..+.+ ......+|++|++++|.+++ ++  ++.+.+ |++|++++|++++
T Consensus       133 ~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~-L~~L~l~~N~l~~  205 (457)
T 3bz5_A          133 NCARNTLTE-ID-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--VSQNKL-LNRLNCDTNNITK  205 (457)
T ss_dssp             ECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--CTTCTT-CCEEECCSSCCSC
T ss_pred             ECCCCccce-ec-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-ec--cccCCC-CCEEECcCCcCCe
Confidence            777777664 22 111256666666666444443 12222456666666666554 22  445554 5555555555555


Q ss_pred             CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736          280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT  328 (500)
Q Consensus       280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~  328 (500)
                      .   .++.+++|++|++++|++++ +|  +..+++|++|++++|.+++.
T Consensus       206 ~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          206 L---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             C---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             e---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            3   25555555555555555554 33  45555555555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=1.1e-24  Score=224.96  Aligned_cols=229  Identities=22%  Similarity=0.259  Sum_probs=126.9

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCC-------------------------------
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLK-------------------------------  170 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-------------------------------  170 (500)
                      .+|+.|++++|.+ |.+|.+|+++++|++|++++|.++|.+|..++++.                               
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~   89 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL   89 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence            4556666666666 55666666666666666666666555555555544                               


Q ss_pred             --CCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEec
Q 041736          171 --LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLA  248 (500)
Q Consensus       171 --~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~  248 (500)
                        +|++|+|++|++++ +|..   +.+|++|++++|++++ ++..  ..+|++|++++|++++ +|......+|++|+++
T Consensus        90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~  161 (454)
T 1jl5_A           90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVD  161 (454)
T ss_dssp             CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred             cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCCC-CcccCCCCCCCEEECC
Confidence              44445555554443 3321   2455555555555552 2211  1467777777777765 5543333667777777


Q ss_pred             cccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736          249 NNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT  328 (500)
Q Consensus       249 ~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~  328 (500)
                      +|.+++ +|..+   . +|++|++++|++++ ++ .++++++|++|++++|++++ +|..   ..+|++|++++|.++ .
T Consensus       162 ~N~l~~-lp~~~---~-~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~  229 (454)
T 1jl5_A          162 NNSLKK-LPDLP---P-SLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-E  229 (454)
T ss_dssp             SSCCSC-CCCCC---T-TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-S
T ss_pred             CCcCcc-cCCCc---c-cccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-c
Confidence            777764 44332   2 37777777777777 44 57777788888888887774 3332   246777777777776 5


Q ss_pred             CchhhcCCCCCcEEEccCCcCccCCCCCccCCEEEcCCCCCCCC
Q 041736          329 VPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       329 ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~~L~~l~l~~N~l~~~  372 (500)
                      +|. +..+++|++|++++|++++.......|+.|++++|.+.+.
T Consensus       230 lp~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l  272 (454)
T 1jl5_A          230 LPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL  272 (454)
T ss_dssp             CCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCC
T ss_pred             ccc-cCCCCCCCEEECCCCcCCcccccccccCEEECCCCccccc
Confidence            663 7778888888888888876433344677777777777664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8.5e-24  Score=203.79  Aligned_cols=188  Identities=17%  Similarity=0.171  Sum_probs=150.9

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      ...+.+|+.|+|++|.+.+..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++++..+..+..+++|+
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  127 (276)
T 2z62_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK  127 (276)
T ss_dssp             TTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred             hccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCC
Confidence            45678999999999999988888899999999999999999988888999999999999999999977776899999999


Q ss_pred             EEeccCCcCCC-CCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCc----EEEe
Q 041736          198 FLDLRYNEFEG-KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLN----EVIL  272 (500)
Q Consensus       198 ~L~Ls~N~l~g-~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~----~L~L  272 (500)
                      +|+|++|++++ .++..+..                      ..+|++|++++|++++..+..+..+.+ |+    +|++
T Consensus       128 ~L~l~~n~l~~~~l~~~~~~----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~l~l~L~l  184 (276)
T 2z62_A          128 ELNVAHNLIQSFKLPEYFSN----------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDL  184 (276)
T ss_dssp             EEECCSSCCCCCCCCGGGGG----------------------CTTCCEEECCSSCCCEECGGGGHHHHT-CTTCCEEEEC
T ss_pred             EEECcCCccceecCchhhcc----------------------CCCCCEEECCCCCCCcCCHHHhhhhhh-ccccceeeec
Confidence            99999999985 24544332                      134555555555555555556666665 66    8899


Q ss_pred             ccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736          273 TNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV  329 (500)
Q Consensus       273 s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i  329 (500)
                      ++|.+++..+..+. ..+|++|+|++|++++..+..+..+++|++|+|++|.+.+..
T Consensus       185 s~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          185 SLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             CCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            99999875544444 448999999999999766666788999999999999988643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=3.2e-23  Score=201.27  Aligned_cols=202  Identities=18%  Similarity=0.216  Sum_probs=138.0

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+++.+++++++++. +|..+.  .+|++|+|++|.+++..+..|.++++|++|+|++|.+++. +. ...+++|++|+
T Consensus         9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~   83 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLD   83 (290)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEE
T ss_pred             cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEE
Confidence            4556666777766654 343332  4666677777766666566666666677777776666633 22 25566666666


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      |++|+++ .++..+                      ....+|++|++++|++++..+..|..+.+ |++|+|++|++++.
T Consensus        84 Ls~N~l~-~l~~~~----------------------~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-L~~L~L~~N~l~~~  139 (290)
T 1p9a_G           84 LSHNQLQ-SLPLLG----------------------QTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTL  139 (290)
T ss_dssp             CCSSCCS-SCCCCT----------------------TTCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCCC
T ss_pred             CCCCcCC-cCchhh----------------------ccCCCCCEEECCCCcCcccCHHHHcCCCC-CCEEECCCCCCCcc
Confidence            6666665 333221                      11245666667777766555567777776 88888888888887


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      .+..|..+++|++|+|++|+|++..+..+..+++|++|+|++|.|+ .+|..+..+.+|+.|+|++|.+...
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            6677788888888888888888555555677888888888888888 7777777778888888888887643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=2.9e-24  Score=206.75  Aligned_cols=199  Identities=22%  Similarity=0.200  Sum_probs=94.1

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+|+.|++++|.+...  ..+..+++|++|+|++|.+++.  ..+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus        41 ~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            3444444444444321  1244444444444444444431  23444444444444444444433333444444444444


Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      ++|+++                       +..+..++ ..+|++|++++|.+++..+..|..+.+ |++|++++|++++.
T Consensus       117 ~~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~  172 (272)
T 3rfs_A          117 VENQLQ-----------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN-LTELDLSYNQLQSL  172 (272)
T ss_dssp             TTSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCC
T ss_pred             CCCcCC-----------------------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc-CCEEECCCCCcCcc
Confidence            444444                       22222111 133444444444444333334444554 55555555555554


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV  355 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~  355 (500)
                      .+..++.+++|++|+|++|++++..+..+..+++|++|+|++|.+.+.       +++|+.|+++.|.++|.+|.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred             CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence            444455555555555555555554444455555555555555555432       33455555555555555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=2.7e-23  Score=197.50  Aligned_cols=192  Identities=20%  Similarity=0.239  Sum_probs=129.8

Q ss_pred             CCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcC
Q 041736          103 YVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF  182 (500)
Q Consensus       103 ~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  182 (500)
                      .||.|.|..|.        ...+.++++++.++. +|..+.  .+|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus         3 ~Cp~~~gC~C~--------~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   71 (251)
T 3m19_A            3 TCETVTGCTCN--------EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL   71 (251)
T ss_dssp             -CHHHHSSEEE--------GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCCceEcC--------CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC
Confidence            57788898894        245678999999875 555443  6899999999999988888899999999999999999


Q ss_pred             CCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhc
Q 041736          183 AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGN  262 (500)
Q Consensus       183 ~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~  262 (500)
                      ++..+..|..+++|++|+|++|++++..+.                                              .|..
T Consensus        72 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------------------------~~~~  105 (251)
T 3m19_A           72 QTLSAGVFDDLTELGTLGLANNQLASLPLG----------------------------------------------VFDH  105 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTT----------------------------------------------TTTT
T ss_pred             CccCHhHhccCCcCCEEECCCCcccccChh----------------------------------------------Hhcc
Confidence            988888888899999999998888732221                                              1222


Q ss_pred             ccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEE
Q 041736          263 MSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNF  342 (500)
Q Consensus       263 l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L  342 (500)
                      +.+ |++|+|++|++++..+..+..+++|++|+|++|+|++..+..+..+++|++|+|++|.+++..+..+..+++|++|
T Consensus       106 l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          106 LTQ-LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             CTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             cCC-CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            333 5555555555555444445555555555555555554444455555566666666666654444455556666666


Q ss_pred             EccCCcCccC
Q 041736          343 SFDYNFFTGE  352 (500)
Q Consensus       343 ~Ls~N~l~g~  352 (500)
                      +|++|.+++.
T Consensus       185 ~l~~N~~~c~  194 (251)
T 3m19_A          185 TLFGNQFDCS  194 (251)
T ss_dssp             ECCSCCBCTT
T ss_pred             EeeCCceeCC
Confidence            6666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=2.1e-23  Score=200.70  Aligned_cols=188  Identities=20%  Similarity=0.186  Sum_probs=152.3

Q ss_pred             CCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736          119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF  198 (500)
Q Consensus       119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  198 (500)
                      ..+.+|+.|+|++|.+.+.  ..+..+++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..+..+++|++
T Consensus        60 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  137 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY  137 (272)
T ss_dssp             GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence            3468899999999999874  47899999999999999999888888999999999999999999887778899999999


Q ss_pred             EeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736          199 LDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH  278 (500)
Q Consensus       199 L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~  278 (500)
                      |+|++|++++..+..+..                      ..+|++|++++|++++..+..|+.+.+ |++|++++|.++
T Consensus       138 L~L~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~  194 (272)
T 3rfs_A          138 LNLAHNQLQSLPKGVFDK----------------------LTNLTELDLSYNQLQSLPEGVFDKLTQ-LKDLRLYQNQLK  194 (272)
T ss_dssp             EECCSSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCS
T ss_pred             EECCCCccCccCHHHhcc----------------------CccCCEEECCCCCcCccCHHHhcCCcc-CCEEECCCCcCC
Confidence            999999998433322211                      134555555555555555555677776 999999999999


Q ss_pred             CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCC
Q 041736          279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN  338 (500)
Q Consensus       279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~  338 (500)
                      +..+..+..+++|++|+|++|.+.+.       +++|+.|++..|.++|.+|.+++.+..
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            87777788899999999999988754       446888889999999999988876554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.4e-22  Score=209.21  Aligned_cols=217  Identities=25%  Similarity=0.347  Sum_probs=109.2

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR  202 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  202 (500)
                      +|+.|++++|.+++ +| .|+++++|++|++++|.+++ +|..+   .+|++|++++|++++ ++ .+.++++|++|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            45555555555554 44 35555666666666665553 33322   355566666665553 34 35556666666666


Q ss_pred             CCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736          203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP  282 (500)
Q Consensus       203 ~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p  282 (500)
                      +|++++ ++...  .+|++|++++|+++ .+|......+|++|++++|.+++ ++..   .. +|++|++++|.+++ ++
T Consensus       204 ~N~l~~-l~~~~--~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~---~~-~L~~L~l~~N~l~~-l~  273 (454)
T 1jl5_A          204 NNSLKK-LPDLP--LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDL---PP-SLEALNVRDNYLTD-LP  273 (454)
T ss_dssp             SSCCSS-CCCCC--TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSC---CT-TCCEEECCSSCCSC-CC
T ss_pred             CCcCCc-CCCCc--CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-cccc---cc-ccCEEECCCCcccc-cC
Confidence            666553 33221  35666666666655 44443333556666666666653 3321   12 25566666665555 33


Q ss_pred             cccccCCCccEEeccCcccCC--CChhhhhCCCCCcEEEcccCCCCCCCchhhcCC-CCCcEEEccCCcCccCCCCCccC
Q 041736          283 EEIGLLKNVTVFDVSYNKLMG--ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSL-PNLRNFSFDYNFFTGESPVCLDL  359 (500)
Q Consensus       283 ~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~~p~~~~L  359 (500)
                      ..   +++|++|++++|++++  .++      .+|++|++++|.+++ +    ..+ ++|++|++++|++++.......|
T Consensus       274 ~~---~~~L~~L~ls~N~l~~l~~~~------~~L~~L~l~~N~l~~-i----~~~~~~L~~L~Ls~N~l~~lp~~~~~L  339 (454)
T 1jl5_A          274 EL---PQSLTFLDVSENIFSGLSELP------PNLYYLNASSNEIRS-L----CDLPPSLEELNVSNNKLIELPALPPRL  339 (454)
T ss_dssp             CC---CTTCCEEECCSSCCSEESCCC------TTCCEEECCSSCCSE-E----CCCCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred             cc---cCcCCEEECcCCccCcccCcC------CcCCEEECcCCcCCc-c----cCCcCcCCEEECCCCccccccccCCcC
Confidence            32   2455666666665554  221      234444444444332 1    112 35555556555555532223345


Q ss_pred             CEEEcCCCCCCC
Q 041736          360 QGFDDKRNCLRD  371 (500)
Q Consensus       360 ~~l~l~~N~l~~  371 (500)
                      +.|++++|.+++
T Consensus       340 ~~L~L~~N~l~~  351 (454)
T 1jl5_A          340 ERLIASFNHLAE  351 (454)
T ss_dssp             CEEECCSSCCSC
T ss_pred             CEEECCCCcccc
Confidence            555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.90  E-value=5.4e-24  Score=213.51  Aligned_cols=247  Identities=18%  Similarity=0.162  Sum_probs=174.7

Q ss_pred             EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCC----ccccCCC-CCCEEeCcCCcCCCcCchhccCC-----CC
Q 041736          126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP----RSFNKLK-LLFELDLSNNRFAGKFPYVVLGL-----PK  195 (500)
Q Consensus       126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~Ls~n~l~~~~p~~l~~l-----~~  195 (500)
                      .++|++|++++.++..+....+|++|+|++|.+++..+    ..|.+++ +|++|+|++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35778888888887777777778888888888876655    6677777 78888888888887666666554     78


Q ss_pred             CcEEeccCCcCCCCCchhhcC------CCCCeEEccCCCccCCCCCccC------CCCcceEEeccccccccCchh----
Q 041736          196 LKFLDLRYNEFEGKIPKALFD------KDLDAVFINNNRFSFELPDNIG------NSPVSVLVLANNKFHGCLPLS----  259 (500)
Q Consensus       196 L~~L~Ls~N~l~g~~p~~~~~------~~L~~L~l~~n~l~~~~p~~~~------~~~L~~L~l~~n~l~~~~p~~----  259 (500)
                      |++|+|++|++++..+..+..      .+|++|++++|++++.....+.      ..+|++|++++|.+++.....    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            888888888887655554332      5788888888888765443332      247888888888888544333    


Q ss_pred             hhcccccCcEEEeccCCCCCCCccccc----cC-CCccEEeccCcccCCC----ChhhhhC-CCCCcEEEcccCCCCCCC
Q 041736          260 FGNMSRTLNEVILTNNGLHSCLPEEIG----LL-KNVTVFDVSYNKLMGE----LPDTIAE-MTSLQQLNVAHNMLSGTV  329 (500)
Q Consensus       260 l~~l~~~L~~L~Ls~n~l~~~~p~~~~----~l-~~L~~L~Ls~n~l~~~----~p~~l~~-l~~L~~L~L~~N~l~g~i  329 (500)
                      +..+..+|++|+|++|++++..+..+.    .+ ++|++|||++|.|++.    ++..+.. .++|++|+|++|.+++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            344442488888888888876654444    34 5888888888888853    4445554 358888888888887644


Q ss_pred             c----hhhcCCCCCcEEEccCCcCccC-----------CCCCccCCEEEcCCCCCCCC
Q 041736          330 P----DSVCSLPNLRNFSFDYNFFTGE-----------SPVCLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       330 p----~~l~~l~~L~~L~Ls~N~l~g~-----------~p~~~~L~~l~l~~N~l~~~  372 (500)
                      .    ..+..+++|++|+|++|.+.+.           ++....|+.|++++|.+.+.
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            3    3446778888888888874332           33445677888888887664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.6e-24  Score=219.18  Aligned_cols=232  Identities=18%  Similarity=0.214  Sum_probs=164.5

Q ss_pred             CcEEEEECCCCCCcccCc----hhhcCCCCCCEEEcCCC---CCCccCCccc-------cCCCCCCEEeCcCCcCCC---
Q 041736          122 RTVAGIDLNHGDIASYLP----EELGLLADIALFHVNTN---RFCGTLPRSF-------NKLKLLFELDLSNNRFAG---  184 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~l~~~~p~~l-------~~l~~L~~L~Ls~n~l~~---  184 (500)
                      .+|+.|+|++|.+.+..+    ..|..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++|.+++   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            568899999998876533    34668889999999885   4455566554       678889999999999886   


Q ss_pred             -cCchhccCCCCCcEEeccCCcCCCCCchhhcC--------------CCCCeEEccCCCcc-CCCCC---cc-CCCCcce
Q 041736          185 -KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--------------KDLDAVFINNNRFS-FELPD---NI-GNSPVSV  244 (500)
Q Consensus       185 -~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--------------~~L~~L~l~~n~l~-~~~p~---~~-~~~~L~~  244 (500)
                       .++..+..+++|++|+|++|.+++..+..+..              ++|++|++++|+++ +.++.   .+ ...+|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             46777888889999999999886433333322              57888888888876 33331   12 2356788


Q ss_pred             EEeccccccc-----cCchhhhcccccCcEEEeccCCCC----CCCccccccCCCccEEeccCcccCCC----ChhhhhC
Q 041736          245 LVLANNKFHG-----CLPLSFGNMSRTLNEVILTNNGLH----SCLPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAE  311 (500)
Q Consensus       245 L~l~~n~l~~-----~~p~~l~~l~~~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~  311 (500)
                      |++++|++..     .++..+..+.+ |++|+|++|.++    +.++..+..+++|++|+|++|.|++.    ++..+..
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~-L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQE-LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTT-CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCC-ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            8888887762     22336666665 888888888875    44666777778888888888887754    4555533


Q ss_pred             --CCCCcEEEcccCCCCC----CCchhh-cCCCCCcEEEccCCcCccCCC
Q 041736          312 --MTSLQQLNVAHNMLSG----TVPDSV-CSLPNLRNFSFDYNFFTGESP  354 (500)
Q Consensus       312 --l~~L~~L~L~~N~l~g----~ip~~l-~~l~~L~~L~Ls~N~l~g~~p  354 (500)
                        +++|++|+|++|.+++    .++..+ .++++|++|++++|.+++..+
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence              7778888888888876    366666 557788888888888776653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=203.78  Aligned_cols=223  Identities=17%  Similarity=0.154  Sum_probs=171.5

Q ss_pred             CcEEEEECCCCCCcccCch---hhcCCCCCCEEEcCCCCCCccCCccc--cCCCCCCEEeCcCCcCCCcCc----hhccC
Q 041736          122 RTVAGIDLNHGDIASYLPE---ELGLLADIALFHVNTNRFCGTLPRSF--NKLKLLFELDLSNNRFAGKFP----YVVLG  192 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l~~~~p----~~l~~  192 (500)
                      .+++.+++.++.+....-.   .+..+++|++|+|++|.+++..+..+  ..+.+|++|+|++|++++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3577888888887543111   12345779999999999999999888  899999999999999997554    34557


Q ss_pred             CCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCC--CC-Cc-c-CCCCcceEEeccccccccCch----hhhc
Q 041736          193 LPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFE--LP-DN-I-GNSPVSVLVLANNKFHGCLPL----SFGN  262 (500)
Q Consensus       193 l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~--~p-~~-~-~~~~L~~L~l~~n~l~~~~p~----~l~~  262 (500)
                      +++|++|+|++|++++..+..+.. .+|++|++++|++.+.  ++ .. + ...+|++|++++|+++. ++.    .++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence            899999999999998666655544 8999999999997642  21 11 1 23678999999998862 222    2456


Q ss_pred             ccccCcEEEeccCCCCCCCccccccC---CCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCC
Q 041736          263 MSRTLNEVILTNNGLHSCLPEEIGLL---KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNL  339 (500)
Q Consensus       263 l~~~L~~L~Ls~n~l~~~~p~~~~~l---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L  339 (500)
                      +.+ |++|+|++|.+++.+|..+..+   ++|++|+|++|+|+ .+|..+.  ++|++|+|++|+|++. +. +..+++|
T Consensus       223 l~~-L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L  296 (310)
T 4glp_A          223 GVQ-PHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV  296 (310)
T ss_dssp             TCC-CSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred             CCC-CCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence            676 9999999999998777777776   68999999999998 6777664  7899999999999853 33 5777888


Q ss_pred             cEEEccCCcCcc
Q 041736          340 RNFSFDYNFFTG  351 (500)
Q Consensus       340 ~~L~Ls~N~l~g  351 (500)
                      ++|+|++|.|+.
T Consensus       297 ~~L~L~~N~l~~  308 (310)
T 4glp_A          297 DNLTLDGNPFLV  308 (310)
T ss_dssp             SCEECSSTTTSC
T ss_pred             cEEECcCCCCCC
Confidence            999999988864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.3e-22  Score=194.10  Aligned_cols=180  Identities=19%  Similarity=0.197  Sum_probs=146.4

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      ..+++.|+|++|.+.+..+..|..+++|++|+|++|.|++...  .+.+++|++|+|++|+++ .++..+..+++|++|+
T Consensus        30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD  106 (290)
T ss_dssp             CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence            3679999999999999888899999999999999999985433  378999999999999998 7888889999999999


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      |++|++++..+..+..                      ..+|++|++++|.+++..+..|..+.+ |++|+|++|++++.
T Consensus       107 l~~N~l~~l~~~~~~~----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~l  163 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRG----------------------LGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTEL  163 (290)
T ss_dssp             CCSSCCCCCCSSTTTT----------------------CTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCSCC
T ss_pred             CCCCcCcccCHHHHcC----------------------CCCCCEEECCCCCCCccChhhcccccC-CCEEECCCCcCCcc
Confidence            9999998433332211                      134555555666665444555677776 99999999999886


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG  327 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g  327 (500)
                      .+..+..+++|++|+|++|+|+ .+|..+..+.+|+.|+|++|.+..
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            6667788999999999999998 778888888899999999998864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=4.1e-24  Score=211.88  Aligned_cols=259  Identities=16%  Similarity=0.143  Sum_probs=194.3

Q ss_pred             CCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCC--CCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc
Q 041736          104 VCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLL--ADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR  181 (500)
Q Consensus       104 ~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  181 (500)
                      |..|.++.|+.       ..++.||++++.+.   +..+..+  .+++.|++++|.+++..+. +..+.+|++|+|++|.
T Consensus        36 c~~W~~~~~~~-------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           36 CKRWYRLASDE-------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             CHHHHHHHTCS-------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCE
T ss_pred             HHHHHHHhcCc-------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCC
Confidence            34588877743       34678889888776   4556666  8899999999998876655 5678889999999998


Q ss_pred             CCCc-CchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCC-CccCC-CCCccC-CCCcceEEeccc-ccccc
Q 041736          182 FAGK-FPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNN-RFSFE-LPDNIG-NSPVSVLVLANN-KFHGC  255 (500)
Q Consensus       182 l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n-~l~~~-~p~~~~-~~~L~~L~l~~n-~l~~~  255 (500)
                      +++. ++..+..+++|++|+|++|.+++..+..+.. ++|++|++++| .+++. ++..+. ..+|++|++++| .+++.
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~  184 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK  184 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH
Confidence            8865 7778888899999999999888666665554 78999999988 56642 444332 367999999999 88764


Q ss_pred             -Cchhhhccc-ccCcEEEeccC--CCC-CCCccccccCCCccEEeccCcc-cCCCChhhhhCCCCCcEEEcccCC-CCCC
Q 041736          256 -LPLSFGNMS-RTLNEVILTNN--GLH-SCLPEEIGLLKNVTVFDVSYNK-LMGELPDTIAEMTSLQQLNVAHNM-LSGT  328 (500)
Q Consensus       256 -~p~~l~~l~-~~L~~L~Ls~n--~l~-~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~-l~g~  328 (500)
                       ++..+..+. + |++|++++|  .++ +.++..+..+++|++|+|++|. +++..+..+..+++|++|+|++|. +...
T Consensus       185 ~~~~~~~~l~~~-L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  263 (336)
T 2ast_B          185 HVQVAVAHVSET-ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  263 (336)
T ss_dssp             HHHHHHHHSCTT-CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             HHHHHHHhcccC-CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence             566677887 6 999999999  555 4466777889999999999998 777777788889999999999985 3322


Q ss_pred             CchhhcCCCCCcEEEccCCcCccCCCC-C-ccCCEEEcCCCCCCCCCCC
Q 041736          329 VPDSVCSLPNLRNFSFDYNFFTGESPV-C-LDLQGFDDKRNCLRDKPRQ  375 (500)
Q Consensus       329 ip~~l~~l~~L~~L~Ls~N~l~g~~p~-~-~~L~~l~l~~N~l~~~~~~  375 (500)
                      .-..+..+++|++|++++| ++...-. . ..+..|++++|.+++..+.
T Consensus       264 ~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          264 TLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             HHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCC
Confidence            2235778899999999988 4332111 1 1377888899988876553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.6e-23  Score=210.08  Aligned_cols=230  Identities=14%  Similarity=0.165  Sum_probs=184.7

Q ss_pred             CcEEEEECCCCCCcccCc----hhhcCCC-CCCEEEcCCCCCCccCCccccCC-----CCCCEEeCcCCcCCCcCchh--
Q 041736          122 RTVAGIDLNHGDIASYLP----EELGLLA-DIALFHVNTNRFCGTLPRSFNKL-----KLLFELDLSNNRFAGKFPYV--  189 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~--  189 (500)
                      .+|+.|||++|.+.+...    ..|..++ +|++|+|++|.+++..+..|..+     .+|++|+|++|++++..+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            469999999999988776    7788898 99999999999998777777775     99999999999999776664  


Q ss_pred             --ccCC-CCCcEEeccCCcCCCCCchhhc------CCCCCeEEccCCCccCCCCCcc----CC--CCcceEEeccccccc
Q 041736          190 --VLGL-PKLKFLDLRYNEFEGKIPKALF------DKDLDAVFINNNRFSFELPDNI----GN--SPVSVLVLANNKFHG  254 (500)
Q Consensus       190 --l~~l-~~L~~L~Ls~N~l~g~~p~~~~------~~~L~~L~l~~n~l~~~~p~~~----~~--~~L~~L~l~~n~l~~  254 (500)
                        +..+ ++|++|+|++|++++.....+.      ..+|++|++++|+++......+    ..  .+|++|+|++|.+++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              4444 8999999999999866554443      2599999999999985433332    22  489999999999998


Q ss_pred             cCchhhhcc-----cccCcEEEeccCCCCCC----Ccccccc-CCCccEEeccCcccCCCChh----hhhCCCCCcEEEc
Q 041736          255 CLPLSFGNM-----SRTLNEVILTNNGLHSC----LPEEIGL-LKNVTVFDVSYNKLMGELPD----TIAEMTSLQQLNV  320 (500)
Q Consensus       255 ~~p~~l~~l-----~~~L~~L~Ls~n~l~~~----~p~~~~~-l~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~L~L  320 (500)
                      ..+..+...     .+ |++|+|++|.+++.    ++..+.. .++|++|||++|.+++....    .+..+++|++|+|
T Consensus       182 ~~~~~l~~~l~~~~~~-L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L  260 (362)
T 3goz_A          182 KNCAELAKFLASIPAS-VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYL  260 (362)
T ss_dssp             SCHHHHHHHHHTSCTT-CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEE
T ss_pred             hhHHHHHHHHHhCCCC-CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEe
Confidence            777666544     45 99999999999874    3445555 45999999999999976553    3467799999999


Q ss_pred             ccCCCCCCC-------chhhcCCCCCcEEEccCCcCccC
Q 041736          321 AHNMLSGTV-------PDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       321 ~~N~l~g~i-------p~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      ++|.+.+..       ...+..+++|++||+++|.+.+.
T Consensus       261 ~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             ccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            999955432       33567888999999999999866

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=2.3e-22  Score=211.80  Aligned_cols=198  Identities=24%  Similarity=0.406  Sum_probs=162.7

Q ss_pred             CcCce-ecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCC
Q 041736          106 NYTGV-FCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAG  184 (500)
Q Consensus       106 ~~~gv-~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  184 (500)
                      .|.++ .|..       .+|+.|+|++|++++ +|..+  +++|++|+|++|.|+ .+|   ..+++|++|+|++|+|++
T Consensus        49 ~~~~l~~C~~-------~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~  114 (571)
T 3cvr_A           49 AVSLLKECLI-------NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST  114 (571)
T ss_dssp             HHHHHHHHHH-------TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC
T ss_pred             hhhhcccccc-------CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC
Confidence            58888 6743       479999999999988 77655  488999999999999 677   557899999999999996


Q ss_pred             cCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhccc
Q 041736          185 KFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMS  264 (500)
Q Consensus       185 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~  264 (500)
                       +|. +.+  +|++|+|++|++++ +|.  ...+|++|++++|++++ +|.  ...+|++|+|++|.+++ +|. |.  .
T Consensus       115 -ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~--~  180 (571)
T 3cvr_A          115 -LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP--E  180 (571)
T ss_dssp             -CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC--T
T ss_pred             -cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh--C
Confidence             777 655  99999999999996 776  55899999999999986 665  44689999999999986 666 55  4


Q ss_pred             ccCcEEEeccCCCCCCCccccccCCCc-------cEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC
Q 041736          265 RTLNEVILTNNGLHSCLPEEIGLLKNV-------TVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP  337 (500)
Q Consensus       265 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~  337 (500)
                      + |++|+|++|+|+. +|. +..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.+|..+..+.
T Consensus       181 ~-L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          181 S-LEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             T-CCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             C-CCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            4 9999999999985 666 554  67       99999999998 6888888899999999999999988888776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=3e-21  Score=185.34  Aligned_cols=201  Identities=20%  Similarity=0.274  Sum_probs=163.5

Q ss_pred             CCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEcc
Q 041736          146 ADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN  225 (500)
Q Consensus       146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~  225 (500)
                      .++++++++++.++ .+|..+.  .+|++|+|++|++++..+..|.++++|++|+|++|+++ .++...+.         
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~---------   82 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK---------   82 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTS---------
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhc---------
Confidence            35788999999998 5666554  57999999999998776678888999999999999887 34433221         


Q ss_pred             CCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCC
Q 041736          226 NNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL  305 (500)
Q Consensus       226 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  305 (500)
                                  ...+|++|++++|.+.+..+..|..+.+ |++|++++|.+++..+..+..+++|++|+|++|+|++..
T Consensus        83 ------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  149 (270)
T 2o6q_A           83 ------------ELKNLETLWVTDNKLQALPIGVFDQLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP  149 (270)
T ss_dssp             ------------SCTTCCEEECCSSCCCCCCTTTTTTCSS-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ------------CCCCCCEEECCCCcCCcCCHhHcccccC-CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence                        1244666666666666555566788886 999999999999988888999999999999999999766


Q ss_pred             hhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCC
Q 041736          306 PDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDK  372 (500)
Q Consensus       306 p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~  372 (500)
                      +..+..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+.    +..|+.|++++|.+...
T Consensus       150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            66789999999999999999977777789999999999999999976654    34699999999988654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=1.8e-21  Score=207.40  Aligned_cols=214  Identities=24%  Similarity=0.286  Sum_probs=114.9

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+|+.|+|++|.|++ ++.   .+++|++|+|++|.|+ .++.   .+.+|++|+|++|++++ ++.   .+.+|++|+|
T Consensus        61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence            456666666666653 333   4566666666666665 3443   55666666666666663 333   4456666666


Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL  281 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~  281 (500)
                      ++|+++ .++..+  .+|++|++++|++++ ++..  ..+|+.|++++|.+++ ++   ..+.+ |++|++++|.+++ +
T Consensus       129 ~~N~l~-~lp~~l--~~L~~L~Ls~N~l~~-l~~~--~~~L~~L~L~~N~l~~-l~---~~~~~-L~~L~Ls~N~l~~-l  196 (622)
T 3g06_A          129 FGNQLT-SLPVLP--PGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LP---MLPSG-LQELSVSDNQLAS-L  196 (622)
T ss_dssp             CSSCCS-CCCCCC--TTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSC-CC---CCCTT-CCEEECCSSCCSC-C
T ss_pred             CCCCCC-cCCCCC--CCCCEEECcCCcCCC-cCCc--cCCCCEEECCCCCCCC-Cc---ccCCC-CcEEECCCCCCCC-C
Confidence            666666 344432  567777777776664 2322  1345555665555553 33   22243 7777777777665 3


Q ss_pred             ccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCccCCE
Q 041736          282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQG  361 (500)
Q Consensus       282 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~~L~~  361 (500)
                      +..   +.+|+.|++++|.++ .++.   .+++|++|+|++|.|++ +|   ..+++|++|+|++|+|++......+|+.
T Consensus       197 ~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~~~~~L~~  265 (622)
T 3g06_A          197 PTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPMLPSGLLS  265 (622)
T ss_dssp             CCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCCTTCCE
T ss_pred             CCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCcccccCcE
Confidence            322   244555555555554 2332   12455555555555553 33   2334555555555555543333334555


Q ss_pred             EEcCCCCCC
Q 041736          362 FDDKRNCLR  370 (500)
Q Consensus       362 l~l~~N~l~  370 (500)
                      |++++|.++
T Consensus       266 L~Ls~N~L~  274 (622)
T 3g06_A          266 LSVYRNQLT  274 (622)
T ss_dssp             EECCSSCCC
T ss_pred             EeCCCCCCC
Confidence            555555555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.2e-21  Score=191.94  Aligned_cols=193  Identities=16%  Similarity=0.268  Sum_probs=137.4

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|++++|.+.. ++ .+..+++|++|+|++|.+++.. . +..+++|++|+|++|++++. + .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEE
Confidence            5678888898888876 33 5788888899999888888543 3 88888888888888888853 3 578888888888


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      |++|++++ ++......+|++|++                       ++|.+++..+  +..+.+ |++|++++|.+++.
T Consensus       114 l~~n~l~~-~~~l~~l~~L~~L~l-----------------------~~n~l~~~~~--l~~l~~-L~~L~l~~n~l~~~  166 (308)
T 1h6u_A          114 LTSTQITD-VTPLAGLSNLQVLYL-----------------------DLNQITNISP--LAGLTN-LQYLSIGNAQVSDL  166 (308)
T ss_dssp             CTTSCCCC-CGGGTTCTTCCEEEC-----------------------CSSCCCCCGG--GGGCTT-CCEEECCSSCCCCC
T ss_pred             CCCCCCCC-chhhcCCCCCCEEEC-----------------------CCCccCcCcc--ccCCCC-ccEEEccCCcCCCC
Confidence            88888874 333211244555554                       4444443222  566665 88888888877763


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                       +. +..+++|++|++++|++++.. . +..+++|++|+|++|.+++..  .+..+++|++|++++|.+++.
T Consensus       167 -~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          167 -TP-LANLSKLTTLKADDNKISDIS-P-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             -GG-GTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECC
T ss_pred             -hh-hcCCCCCCEEECCCCccCcCh-h-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecC
Confidence             33 777788888888888887433 2 677788888888888887544  267778888888888887653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2.1e-22  Score=197.55  Aligned_cols=222  Identities=17%  Similarity=0.163  Sum_probs=177.2

Q ss_pred             CCCCCEEEcCCCCCCccCCc---cccCCCCCCEEeCcCCcCCCcCchhc--cCCCCCcEEeccCCcCCCCCchh----h-
Q 041736          145 LADIALFHVNTNRFCGTLPR---SFNKLKLLFELDLSNNRFAGKFPYVV--LGLPKLKFLDLRYNEFEGKIPKA----L-  214 (500)
Q Consensus       145 l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~~p~~----~-  214 (500)
                      ...++.|.+.++.++...-.   .+..+++|++|+|++|.+++..+..+  ..+++|++|+|++|++++..+..    + 
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            34588899999888632111   12345779999999999999999888  89999999999999999755521    1 


Q ss_pred             cCCCCCeEEccCCCccCCCCCccCC-CCcceEEecccccccc--C--chhhhcccccCcEEEeccCCCCCCCcc----cc
Q 041736          215 FDKDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGC--L--PLSFGNMSRTLNEVILTNNGLHSCLPE----EI  285 (500)
Q Consensus       215 ~~~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~--~--p~~l~~l~~~L~~L~Ls~n~l~~~~p~----~~  285 (500)
                      ...+|++|++++|++++..+..++. .+|++|++++|++.+.  +  ...++.+.+ |++|+|++|+++. ++.    .+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~-l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPA-IQNLALRNTGMET-PTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCC-CCSCBCCSSCCCC-HHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCC-CCEEECCCCCCCc-hHHHHHHHH
Confidence            2379999999999998877776654 7899999999998653  2  223467776 9999999999975 333    25


Q ss_pred             ccCCCccEEeccCcccCCCChhhhhCC---CCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC-CC-CCccCC
Q 041736          286 GLLKNVTVFDVSYNKLMGELPDTIAEM---TSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE-SP-VCLDLQ  360 (500)
Q Consensus       286 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~-~p-~~~~L~  360 (500)
                      +.+++|++|||++|+|++.+|..+..+   ++|++|+|++|.|+ .+|..+.  ++|++|+|++|++++. .+ ....|+
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~  297 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVD  297 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCS
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCcc
Confidence            788999999999999998878777776   69999999999999 7787764  7999999999999984 32 245799


Q ss_pred             EEEcCCCCCCC
Q 041736          361 GFDDKRNCLRD  371 (500)
Q Consensus       361 ~l~l~~N~l~~  371 (500)
                      .|++++|.++.
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999998875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=1.3e-23  Score=212.67  Aligned_cols=235  Identities=19%  Similarity=0.263  Sum_probs=190.1

Q ss_pred             CchhhcCCCCCCEEEcCCCCCCccCC----ccccCCCCCCEEeCcCC---cCCCcCchhc-------cCCCCCcEEeccC
Q 041736          138 LPEELGLLADIALFHVNTNRFCGTLP----RSFNKLKLLFELDLSNN---RFAGKFPYVV-------LGLPKLKFLDLRY  203 (500)
Q Consensus       138 ~p~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~Ls~n---~l~~~~p~~l-------~~l~~L~~L~Ls~  203 (500)
                      +...+..+++|++|+|++|.+++..+    ..|..+++|++|+|++|   ++++.+|..+       ..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            55678889999999999999986633    44778999999999996   4555566554       7899999999999


Q ss_pred             CcCCCC----CchhhcC-CCCCeEEccCCCccCCCCCccCC--------------CCcceEEecccccc-ccCc---hhh
Q 041736          204 NEFEGK----IPKALFD-KDLDAVFINNNRFSFELPDNIGN--------------SPVSVLVLANNKFH-GCLP---LSF  260 (500)
Q Consensus       204 N~l~g~----~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~--------------~~L~~L~l~~n~l~-~~~p---~~l  260 (500)
                      |.+++.    ++..+.. ++|++|+|++|.++...+..+..              .+|++|++++|+++ +.++   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            999863    4544443 89999999999997443333322              58999999999998 3444   467


Q ss_pred             hcccccCcEEEeccCCCCC-----CCccccccCCCccEEeccCcccC----CCChhhhhCCCCCcEEEcccCCCCCC---
Q 041736          261 GNMSRTLNEVILTNNGLHS-----CLPEEIGLLKNVTVFDVSYNKLM----GELPDTIAEMTSLQQLNVAHNMLSGT---  328 (500)
Q Consensus       261 ~~l~~~L~~L~Ls~n~l~~-----~~p~~~~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~N~l~g~---  328 (500)
                      ..+.+ |++|+|++|+++.     .++..+..+++|++|+|++|.|+    +.++..+..+++|++|+|++|.+++.   
T Consensus       184 ~~~~~-L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          184 QSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHCTT-CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HhCCC-cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            77876 9999999999983     24447889999999999999996    57888899999999999999999875   


Q ss_pred             -Cchhhc--CCCCCcEEEccCCcCcc----CCCC-----CccCCEEEcCCCCCCCCC
Q 041736          329 -VPDSVC--SLPNLRNFSFDYNFFTG----ESPV-----CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       329 -ip~~l~--~l~~L~~L~Ls~N~l~g----~~p~-----~~~L~~l~l~~N~l~~~~  373 (500)
                       ++..+.  .+++|++|+|++|.+++    .++.     +..|+.|++++|.+.+..
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             566664  48999999999999998    3443     457999999999998765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=6.4e-22  Score=186.45  Aligned_cols=196  Identities=17%  Similarity=0.202  Sum_probs=103.1

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCC-CCccCCccccCCCCCCEEeCcC-CcCCCcCchhccCCCCCcEEe
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNR-FCGTLPRSFNKLKLLFELDLSN-NRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +++.|+|++|.+++..+..|..+++|++|+|++|. +++..+..|.++++|++|+|++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45566666666655544455556666666666664 5544444555566666666665 555544444555555666666


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcc---eEEeccc-cccccCchhhhcccccCc-EEEeccC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVS---VLVLANN-KFHGCLPLSFGNMSRTLN-EVILTNN  275 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~---~L~l~~n-~l~~~~p~~l~~l~~~L~-~L~Ls~n  275 (500)
                      +++|++++ +|.                       .....+|+   +|++++| .+++..+..|..+.+ |+ +|++++|
T Consensus       112 l~~n~l~~-lp~-----------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~-L~~~L~l~~n  166 (239)
T 2xwt_C          112 IFNTGLKM-FPD-----------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN-ETLTLKLYNN  166 (239)
T ss_dssp             EEEECCCS-CCC-----------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS-SEEEEECCSC
T ss_pred             CCCCCCcc-ccc-----------------------cccccccccccEEECCCCcchhhcCcccccchhc-ceeEEEcCCC
Confidence            66555552 332                       11112232   5555555 555444444555554 66 6666666


Q ss_pred             CCCCCCccccccCCCccEEeccCcc-cCCCChhhhhCC-CCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCC
Q 041736          276 GLHSCLPEEIGLLKNVTVFDVSYNK-LMGELPDTIAEM-TSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN  347 (500)
Q Consensus       276 ~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N  347 (500)
                      +++. ++......++|++|+|++|+ +++..+..+..+ ++|++|+|++|.++ .+|..  .+.+|++|+++++
T Consensus       167 ~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          167 GFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred             CCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence            6653 33222222556666666663 554444455555 56666666666665 33332  3445555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=1.7e-23  Score=216.60  Aligned_cols=249  Identities=16%  Similarity=0.111  Sum_probs=124.2

Q ss_pred             CcEEEEECCCCCCcccCchhhc-----CCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCcCchhcc-
Q 041736          122 RTVAGIDLNHGDIASYLPEELG-----LLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGKFPYVVL-  191 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-  191 (500)
                      ++|+.|+|++|.+.+.....+.     ...+|++|+|++|.+++.    ++..+..+++|++|+|++|.+++.....+. 
T Consensus       113 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  192 (461)
T 1z7x_W          113 PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQ  192 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHH
Confidence            4455555555554332222111     133455555555555432    233344445555555555555432222221 


Q ss_pred             ----CCCCCcEEeccCCcCCCC----CchhhcC-CCCCeEEccCCCccCCC-----CCcc-CCCCcceEEecccccccc-
Q 041736          192 ----GLPKLKFLDLRYNEFEGK----IPKALFD-KDLDAVFINNNRFSFEL-----PDNI-GNSPVSVLVLANNKFHGC-  255 (500)
Q Consensus       192 ----~l~~L~~L~Ls~N~l~g~----~p~~~~~-~~L~~L~l~~n~l~~~~-----p~~~-~~~~L~~L~l~~n~l~~~-  255 (500)
                          .+++|++|+|++|.+++.    ++..+.. .+|++|++++|.++...     +... ...+|++|++++|.+++. 
T Consensus       193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~  272 (461)
T 1z7x_W          193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG  272 (461)
T ss_dssp             HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence                234555555555555432    2222221 45566666665554321     1111 124566666666666543 


Q ss_pred             ---CchhhhcccccCcEEEeccCCCCCCCcccccc-----CCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccC
Q 041736          256 ---LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGL-----LKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHN  323 (500)
Q Consensus       256 ---~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N  323 (500)
                         ++..+..+.+ |++|++++|.+++.....+..     .++|++|+|++|.+++.    ++..+..+++|++|+|++|
T Consensus       273 ~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          273 CGDLCRVLRAKES-LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN  351 (461)
T ss_dssp             HHHHHHHHHHCTT-CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHhhCCC-cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence               3444555554 666666666665432222222     24666666666666643    3445556667777777777


Q ss_pred             CCCCCCchhhcC-----CCCCcEEEccCCcCcc----CCCC----CccCCEEEcCCCCCCC
Q 041736          324 MLSGTVPDSVCS-----LPNLRNFSFDYNFFTG----ESPV----CLDLQGFDDKRNCLRD  371 (500)
Q Consensus       324 ~l~g~ip~~l~~-----l~~L~~L~Ls~N~l~g----~~p~----~~~L~~l~l~~N~l~~  371 (500)
                      .+++.....+..     .++|++|++++|.+++    .++.    +..|+.|++++|.+.+
T Consensus       352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            666443333321     5567777777777664    3332    3467777777776654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=6.7e-21  Score=186.56  Aligned_cols=172  Identities=19%  Similarity=0.304  Sum_probs=124.5

Q ss_pred             CCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcE
Q 041736          119 HSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKF  198 (500)
Q Consensus       119 ~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  198 (500)
                      ..+.+|+.|+|++|.+.+..+  +..+++|++|+|++|.+++.  ..+..+++|++|+|++|++++ ++ .+..+++|++
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  133 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQV  133 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCE
T ss_pred             hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCE
Confidence            346889999999999987544  99999999999999999853  369999999999999999996 44 3899999999


Q ss_pred             EeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736          199 LDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH  278 (500)
Q Consensus       199 L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~  278 (500)
                      |+|++|++++ ++......+|++|++++|++++                       . +. +..+.+ |++|++++|.++
T Consensus       134 L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~-----------------------~-~~-l~~l~~-L~~L~l~~n~l~  186 (308)
T 1h6u_A          134 LYLDLNQITN-ISPLAGLTNLQYLSIGNAQVSD-----------------------L-TP-LANLSK-LTTLKADDNKIS  186 (308)
T ss_dssp             EECCSSCCCC-CGGGGGCTTCCEEECCSSCCCC-----------------------C-GG-GTTCTT-CCEEECCSSCCC
T ss_pred             EECCCCccCc-CccccCCCCccEEEccCCcCCC-----------------------C-hh-hcCCCC-CCEEECCCCccC
Confidence            9999999984 3332222556666665555543                       1 11 455554 666666666666


Q ss_pred             CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736          279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG  327 (500)
Q Consensus       279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g  327 (500)
                      +..+  +..+++|++|+|++|++++..  .+..+++|++|+|++|.+++
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            5322  666667777777777766433  26666677777777776653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.5e-22  Score=200.64  Aligned_cols=231  Identities=15%  Similarity=0.102  Sum_probs=185.8

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCcc-CCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGT-LPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      .+++.|++++|.+.+..+. +..+.+|++|+|++|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            6789999999999887665 56799999999999999866 788899999999999999999988888999999999999


Q ss_pred             ccCC-cCCCC-Cchhhc-CCCCCeEEccCC-CccCC-CCCccC-CC-CcceEEeccc--ccc-ccCchhhhcccccCcEE
Q 041736          201 LRYN-EFEGK-IPKALF-DKDLDAVFINNN-RFSFE-LPDNIG-NS-PVSVLVLANN--KFH-GCLPLSFGNMSRTLNEV  270 (500)
Q Consensus       201 Ls~N-~l~g~-~p~~~~-~~~L~~L~l~~n-~l~~~-~p~~~~-~~-~L~~L~l~~n--~l~-~~~p~~l~~l~~~L~~L  270 (500)
                      |++| .+++. ++..+. .++|++|++++| .+++. ++..+. .. +|++|++++|  .++ +.++..+..+.+ |++|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~-L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT-CSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC-CCEE
Confidence            9999 67753 444333 389999999999 88753 344333 35 8999999999  455 456777788887 9999


Q ss_pred             EeccCC-CCCCCccccccCCCccEEeccCcc-cCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc
Q 041736          271 ILTNNG-LHSCLPEEIGLLKNVTVFDVSYNK-LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF  348 (500)
Q Consensus       271 ~Ls~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~  348 (500)
                      ++++|. +++..+..+..+++|++|+|++|. ++......+.++++|++|+|++| ++...-..+.  .++..|++++|+
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~  304 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH  304 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence            999999 777778889999999999999995 43322236788999999999999 5543222232  236667799999


Q ss_pred             CccCCCCCc
Q 041736          349 FTGESPVCL  357 (500)
Q Consensus       349 l~g~~p~~~  357 (500)
                      +++..+...
T Consensus       305 l~~~~~~~~  313 (336)
T 2ast_B          305 FTTIARPTI  313 (336)
T ss_dssp             SCCTTCSSC
T ss_pred             CccccCCcc
Confidence            999988644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=2.4e-23  Score=215.37  Aligned_cols=248  Identities=15%  Similarity=0.128  Sum_probs=169.9

Q ss_pred             cEEEEECCCCCCcc----cCchhhcCCCCCCEEEcCCCCCCccCCcccc-----CCCCCCEEeCcCCcCCCc----Cchh
Q 041736          123 TVAGIDLNHGDIAS----YLPEELGLLADIALFHVNTNRFCGTLPRSFN-----KLKLLFELDLSNNRFAGK----FPYV  189 (500)
Q Consensus       123 ~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~----~p~~  189 (500)
                      +|++|+|++|.++.    .++..+..+++|++|+|++|.+++.....+.     .+.+|++|+|++|++++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            57888888888864    4577778888888888888887654333332     245788888888888763    3556


Q ss_pred             ccCCCCCcEEeccCCcCCCCCchhhc------CCCCCeEEccCCCccCC----CCCccC-CCCcceEEeccccccccCch
Q 041736          190 VLGLPKLKFLDLRYNEFEGKIPKALF------DKDLDAVFINNNRFSFE----LPDNIG-NSPVSVLVLANNKFHGCLPL  258 (500)
Q Consensus       190 l~~l~~L~~L~Ls~N~l~g~~p~~~~------~~~L~~L~l~~n~l~~~----~p~~~~-~~~L~~L~l~~n~l~~~~p~  258 (500)
                      +..+++|++|+|++|.+++.....+.      ..+|++|++++|.++..    ++..+. ..+|++|++++|.+.+....
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            66678888888888887643333332      24888888888887753    233332 36788888888887653222


Q ss_pred             hh-----hcccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCCChhhhhC-----CCCCcEEEcccCC
Q 041736          259 SF-----GNMSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGELPDTIAE-----MTSLQQLNVAHNM  324 (500)
Q Consensus       259 ~l-----~~l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~N~  324 (500)
                      .+     ..+.+ |++|++++|.+++.    ++..+..+++|++|+|++|.+++.....+..     .++|++|+|++|.
T Consensus       246 ~l~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  324 (461)
T 1z7x_W          246 ELCPGLLHPSSR-LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS  324 (461)
T ss_dssp             HHHHHHTSTTCC-CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhcCCCC-ceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence            22     23454 88888888888764    4566777888888888888876543333332     2588888888888


Q ss_pred             CCCC----CchhhcCCCCCcEEEccCCcCccCCCC---------CccCCEEEcCCCCCCC
Q 041736          325 LSGT----VPDSVCSLPNLRNFSFDYNFFTGESPV---------CLDLQGFDDKRNCLRD  371 (500)
Q Consensus       325 l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~~p~---------~~~L~~l~l~~N~l~~  371 (500)
                      +++.    ++..+..+++|++|++++|.+++....         ...|+.|++++|.+++
T Consensus       325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence            8765    455667778888888888887654221         3368888888887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=1.7e-20  Score=199.89  Aligned_cols=218  Identities=25%  Similarity=0.322  Sum_probs=177.1

Q ss_pred             CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEE
Q 041736          120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFL  199 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  199 (500)
                      .+.+|+.|+|++|.|++ ++.   .+.+|++|+|++|.+++ ++.   .+.+|++|+|++|++++ ++..   +++|++|
T Consensus        79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L  146 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL  146 (622)
T ss_dssp             CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred             cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence            46789999999999986 554   78999999999999985 454   67889999999999994 5653   4899999


Q ss_pred             eccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          200 DLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      +|++|++++ ++.  ...+|+.|++++|++++ ++  ....+|+.|++++|.+++ ++..   +.+ |+.|++++|.++.
T Consensus       147 ~Ls~N~l~~-l~~--~~~~L~~L~L~~N~l~~-l~--~~~~~L~~L~Ls~N~l~~-l~~~---~~~-L~~L~L~~N~l~~  215 (622)
T 3g06_A          147 SVSDNQLAS-LPA--LPSELCKLWAYNNQLTS-LP--MLPSGLQELSVSDNQLAS-LPTL---PSE-LYKLWAYNNRLTS  215 (622)
T ss_dssp             ECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCCC---CTT-CCEEECCSSCCSS
T ss_pred             ECcCCcCCC-cCC--ccCCCCEEECCCCCCCC-Cc--ccCCCCcEEECCCCCCCC-CCCc---cch-hhEEECcCCcccc
Confidence            999999984 554  23789999999999985 55  223779999999999985 4433   244 9999999999986


Q ss_pred             CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----
Q 041736          280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----  355 (500)
Q Consensus       280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----  355 (500)
                       ++.   .+++|++|+|++|+|++ +|   ..+++|++|+|++|.|+ .+|.   .+++|++|+|++|+|+ .+|.    
T Consensus       216 -l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~  282 (622)
T 3g06_A          216 -LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIH  282 (622)
T ss_dssp             -CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGG
T ss_pred             -cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhh
Confidence             443   35789999999999995 55   46689999999999998 5665   5788999999999998 4554    


Q ss_pred             CccCCEEEcCCCCCCCCC
Q 041736          356 CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       356 ~~~L~~l~l~~N~l~~~~  373 (500)
                      +.+|+.|++++|.+.+..
T Consensus       283 l~~L~~L~L~~N~l~~~~  300 (622)
T 3g06_A          283 LSSETTVNLEGNPLSERT  300 (622)
T ss_dssp             SCTTCEEECCSCCCCHHH
T ss_pred             ccccCEEEecCCCCCCcC
Confidence            346899999999988653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=5.9e-21  Score=179.83  Aligned_cols=196  Identities=12%  Similarity=0.088  Sum_probs=158.0

Q ss_pred             CCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc-CCCcCchhccCCCCCcEEeccC-CcCCCCCchhhcCCCCCeEE
Q 041736          146 ADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR-FAGKFPYVVLGLPKLKFLDLRY-NEFEGKIPKALFDKDLDAVF  223 (500)
Q Consensus       146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~~~L~~L~  223 (500)
                      .+|++|+|++|.+++..+..|.++++|++|+|++|+ +++..+..|.++++|++|+|++ |+++ .++...+        
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f--------  101 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDAL--------  101 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSE--------
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHh--------
Confidence            489999999999997777789999999999999997 8866666889999999999998 8887 3332111        


Q ss_pred             ccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCc---EEEeccC-CCCCCCccccccCCCcc-EEeccC
Q 041736          224 INNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLN---EVILTNN-GLHSCLPEEIGLLKNVT-VFDVSY  298 (500)
Q Consensus       224 l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~---~L~Ls~n-~l~~~~p~~~~~l~~L~-~L~Ls~  298 (500)
                                   .+..+|++|++++|.+++ ++. |..+.+ |+   +|++++| ++++..+..|.++++|+ +|++++
T Consensus       102 -------------~~l~~L~~L~l~~n~l~~-lp~-~~~l~~-L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~  165 (239)
T 2xwt_C          102 -------------KELPLLKFLGIFNTGLKM-FPD-LTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN  165 (239)
T ss_dssp             -------------ECCTTCCEEEEEEECCCS-CCC-CTTCCB-CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS
T ss_pred             -------------CCCCCCCEEeCCCCCCcc-ccc-cccccc-cccccEEECCCCcchhhcCcccccchhcceeEEEcCC
Confidence                         112457777777777775 555 777776 87   9999999 99987777899999999 999999


Q ss_pred             cccCCCChhhhhCCCCCcEEEcccCC-CCCCCchhhcCC-CCCcEEEccCCcCccCCCC-CccCCEEEcCCC
Q 041736          299 NKLMGELPDTIAEMTSLQQLNVAHNM-LSGTVPDSVCSL-PNLRNFSFDYNFFTGESPV-CLDLQGFDDKRN  367 (500)
Q Consensus       299 n~l~~~~p~~l~~l~~L~~L~L~~N~-l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~~p~-~~~L~~l~l~~N  367 (500)
                      |+++ .++.......+|++|+|++|. +++..+..|..+ ++|++|++++|++++..+. ...++.|+++++
T Consensus       166 n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          166 NGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             CCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred             CCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence            9999 565554444899999999995 986666778899 9999999999999976655 347889988765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=9.1e-21  Score=199.63  Aligned_cols=183  Identities=22%  Similarity=0.333  Sum_probs=157.2

Q ss_pred             CCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEcc
Q 041736          146 ADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFIN  225 (500)
Q Consensus       146 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~  225 (500)
                      .+|++|+|++|.|++ +|..+  +++|++|+|++|+|+ .+|   ..+++|++|+|++|+|++ +|. +. .+|++|+++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECC
Confidence            489999999999996 77766  378999999999999 677   457999999999999996 777 43 499999999


Q ss_pred             CCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCC
Q 041736          226 NNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL  305 (500)
Q Consensus       226 ~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~  305 (500)
                      +|++++ +|.  ...+|++|++++|.+++ ++.   .+.+ |++|+|++|.+++ +|. +.  ++|++|+|++|+|+ .+
T Consensus       129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~-L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l  195 (571)
T 3cvr_A          129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTS-LEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL  195 (571)
T ss_dssp             SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTT-CCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred             CCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCC-cCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence            999997 666  56789999999999996 665   4555 9999999999998 676 66  89999999999999 67


Q ss_pred             hhhhhCCCCC-------cEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736          306 PDTIAEMTSL-------QQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV  355 (500)
Q Consensus       306 p~~l~~l~~L-------~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~  355 (500)
                      |. +..  +|       +.|+|++|.|+ .+|..+..+++|++|+|++|.|++.+|.
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence            76 554  77       99999999999 6898888899999999999999987765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=1.8e-20  Score=186.94  Aligned_cols=237  Identities=16%  Similarity=0.188  Sum_probs=169.4

Q ss_pred             CCcCceecCCCC--C--CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCC-ccccCCCCCCE-EeCc
Q 041736          105 CNYTGVFCAQAL--D--NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLP-RSFNKLKLLFE-LDLS  178 (500)
Q Consensus       105 c~~~gv~c~~~~--~--~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~-L~Ls  178 (500)
                      |.+..|.|....  .  ..-..++++|+|++|.|+..-+..|+++++|++|+|++|.+.+.++ ..|.++++|++ ++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            567778885321  0  1123578999999999987666789999999999999999876665 46788888765 6677


Q ss_pred             CCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--CCCCeEEccC-CCccCCCCCccCC--CCcceEEecccccc
Q 041736          179 NNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINN-NRFSFELPDNIGN--SPVSVLVLANNKFH  253 (500)
Q Consensus       179 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~-n~l~~~~p~~~~~--~~L~~L~l~~n~l~  253 (500)
                      .|+++...+..|..+++|++|++++|++++ ++...+.  .++..|++.+ +++.......+..  ..++.|++++|+++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhcccccccccccccccc-CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            799997778889999999999999999984 4433332  5677777765 4454322222322  35788999999988


Q ss_pred             ccCchhhhcccccCcEEEecc-CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchh
Q 041736          254 GCLPLSFGNMSRTLNEVILTN-NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDS  332 (500)
Q Consensus       254 ~~~p~~l~~l~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~  332 (500)
                      . ++.......+ |++|++++ |.++......|+.+++|++|||++|+|+ .+|..  .+.+|+.|.+.++.-...+|. 
T Consensus       168 ~-i~~~~f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-  241 (350)
T 4ay9_X          168 E-IHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-  241 (350)
T ss_dssp             E-ECTTSSTTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-
T ss_pred             C-CChhhccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-
Confidence            4 5555555565 88999875 4555533456788999999999999998 45542  355677777666544446663 


Q ss_pred             hcCCCCCcEEEccCCc
Q 041736          333 VCSLPNLRNFSFDYNF  348 (500)
Q Consensus       333 l~~l~~L~~L~Ls~N~  348 (500)
                      +.++++|++++++++.
T Consensus       242 l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          242 LEKLVALMEASLTYPS  257 (350)
T ss_dssp             TTTCCSCCEEECSCHH
T ss_pred             chhCcChhhCcCCCCc
Confidence            7788888888887653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=2.9e-20  Score=171.16  Aligned_cols=190  Identities=20%  Similarity=0.177  Sum_probs=113.9

Q ss_pred             CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC
Q 041736          105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN  180 (500)
Q Consensus       105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  180 (500)
                      |.|.++.|....    ......+++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            678888885321    1112234555555555555544444555555555555555555444444555555555555555


Q ss_pred             cCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEeccccccccCchh
Q 041736          181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNKFHGCLPLS  259 (500)
Q Consensus       181 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~l~~~~p~~  259 (500)
                      ++++..+..+..+++|++|+|++|+++                       +..+..+. ..+|++|++++|.+++..+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  143 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQ-----------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGV  143 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCc-----------------------ccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence            555444444555555555555555555                       32222222 255677777777777555555


Q ss_pred             hhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736          260 FGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV  329 (500)
Q Consensus       260 l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i  329 (500)
                      +..+.+ |++|++++|.+.+       .+++|++|+++.|+++|.+|.+++.+..    ++..+...|..
T Consensus       144 ~~~l~~-L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~  201 (208)
T 2o6s_A          144 FDRLTS-LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKP  201 (208)
T ss_dssp             TTTCTT-CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCB
T ss_pred             hccCCC-ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCc
Confidence            777776 9999999987765       3557888999999999999988876654    34444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.3e-19  Score=171.86  Aligned_cols=176  Identities=18%  Similarity=0.139  Sum_probs=139.3

Q ss_pred             CCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEecc
Q 041736          171 LLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLAN  249 (500)
Q Consensus       171 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~  249 (500)
                      ..++++++++.++ .+|..+.  .+|++|+|++|++++..+                       ..+. ..+|++|+|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~   68 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSD-----------------------ATFRGLTKLTWLNLDY   68 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCT-----------------------TTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCH-----------------------hHhcCcccCCEEECCC
Confidence            3556677776666 4554443  456666666666653333                       2222 25677777777


Q ss_pred             ccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736          250 NKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV  329 (500)
Q Consensus       250 n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i  329 (500)
                      |.+.+..+..|..+.+ |++|+|++|++++..+..+..+++|++|+|++|+|++..+..+..+.+|++|+|++|.|++..
T Consensus        69 n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           69 NQLQTLSAGVFDDLTE-LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             SCCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcCCccCHhHhccCCc-CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            7777767777888887 999999999999988888999999999999999999777777899999999999999999777


Q ss_pred             chhhcCCCCCcEEEccCCcCccCCCC----CccCCEEEcCCCCCCCCC
Q 041736          330 PDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       330 p~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~l~~N~l~~~~  373 (500)
                      +..+..+++|++|+|++|++++..+.    ...|+.|++++|.+.+..
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            77899999999999999999987764    346999999999998763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.5e-19  Score=180.20  Aligned_cols=235  Identities=17%  Similarity=0.165  Sum_probs=172.3

Q ss_pred             EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc-hhccCCCCCcE-Eecc
Q 041736          125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP-YVVLGLPKLKF-LDLR  202 (500)
Q Consensus       125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~-L~Ls  202 (500)
                      +.++.++++++. +|..+  .+++++|+|++|+|+..-+.+|.++++|++|+|++|++.+.++ ..|.++++|++ +.++
T Consensus        12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            357888988875 67655  4689999999999996555689999999999999999876665 46788988775 6677


Q ss_pred             CCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCcc-CCCCcceEEecc-ccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          203 YNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNI-GNSPVSVLVLAN-NKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       203 ~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~-n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      +|+++...+..+.. .+|++|++++|++....+..+ ...++..|++.+ +.+.......|..+...+++|+|++|+|+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            89998443444333 899999999999986544332 335678888865 556654455677766558999999999987


Q ss_pred             CCccccccCCCccEEeccC-cccCCCCh-hhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC--
Q 041736          280 CLPEEIGLLKNVTVFDVSY-NKLMGELP-DTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV--  355 (500)
Q Consensus       280 ~~p~~~~~l~~L~~L~Ls~-n~l~~~~p-~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~--  355 (500)
                       ++.......+|++|++++ |.++ .++ ..|..+++|++|+|++|+|+ .+|..  .+.+|+.|.+.++.--..+|.  
T Consensus       169 -i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~l~  243 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPTLE  243 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCCTT
T ss_pred             -CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCCch
Confidence             455555667899999985 5666 565 46789999999999999998 55542  245666666555543344554  


Q ss_pred             -CccCCEEEcCCC
Q 041736          356 -CLDLQGFDDKRN  367 (500)
Q Consensus       356 -~~~L~~l~l~~N  367 (500)
                       ..+|+.+++.++
T Consensus       244 ~l~~L~~l~l~~~  256 (350)
T 4ay9_X          244 KLVALMEASLTYP  256 (350)
T ss_dssp             TCCSCCEEECSCH
T ss_pred             hCcChhhCcCCCC
Confidence             346777777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.9e-19  Score=164.52  Aligned_cols=174  Identities=22%  Similarity=0.262  Sum_probs=99.7

Q ss_pred             EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736          125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN  204 (500)
Q Consensus       125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  204 (500)
                      +.++.+++.++. +|..+  ..+|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            467777777655 33322  457788888888887666666777788888888888877555556677777777777777


Q ss_pred             cCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccc
Q 041736          205 EFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE  284 (500)
Q Consensus       205 ~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~  284 (500)
                      ++++ ++.                                             ..|..+.+ |++|+|++|++++..+..
T Consensus        87 ~l~~-~~~---------------------------------------------~~~~~l~~-L~~L~L~~N~l~~~~~~~  119 (208)
T 2o6s_A           87 QLQS-LPN---------------------------------------------GVFDKLTQ-LKELALNTNQLQSLPDGV  119 (208)
T ss_dssp             CCCC-CCT---------------------------------------------TTTTTCTT-CCEEECCSSCCCCCCTTT
T ss_pred             cCCc-cCH---------------------------------------------hHhcCccC-CCEEEcCCCcCcccCHhH
Confidence            7662 211                                             12223333 555555555555443344


Q ss_pred             cccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC
Q 041736          285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV  355 (500)
Q Consensus       285 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~  355 (500)
                      +..+++|++|+|++|++++..+..+..+++|++|+|++|.+.+       .+++|++|+++.|+++|.+|.
T Consensus       120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~  183 (208)
T 2o6s_A          120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRN  183 (208)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBC
T ss_pred             hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeec
Confidence            4555555555555555554333334455555555555554432       233455555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=3.4e-19  Score=172.89  Aligned_cols=81  Identities=27%  Similarity=0.355  Sum_probs=44.0

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|++++|.+...  ..+..+++|++|+|++|.+++..+  +.++++|++|+|++|++++ ++ .+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence            34556666666665443  235555666666666666654322  5555666666666665553 22 255555555555


Q ss_pred             ccCCcCC
Q 041736          201 LRYNEFE  207 (500)
Q Consensus       201 Ls~N~l~  207 (500)
                      |++|+++
T Consensus       119 L~~n~i~  125 (291)
T 1h6t_A          119 LEHNGIS  125 (291)
T ss_dssp             CTTSCCC
T ss_pred             CCCCcCC
Confidence            5555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=7.9e-19  Score=164.18  Aligned_cols=164  Identities=23%  Similarity=0.290  Sum_probs=106.8

Q ss_pred             CCCCCCCCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEe
Q 041736           97 SNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELD  176 (500)
Q Consensus        97 ~~w~~~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  176 (500)
                      ..|.+...|.|++|.|..                 +.+. .+|..+  ..+|++|+|++|.|++..+..|.++++|++|+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~-----------------~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   70 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRS-----------------KRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELY   70 (229)
T ss_dssp             CCCCTTCEEETTEEECTT-----------------SCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccCCCCCEEeCCEeEccC-----------------CCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEE
Confidence            445677889999998853                 2222 234333  27888999999999888788888889999999


Q ss_pred             CcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccC
Q 041736          177 LSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCL  256 (500)
Q Consensus       177 Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~  256 (500)
                      |++|+|+...+..|..+++|++|+|++|++++ ++.                                            
T Consensus        71 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~--------------------------------------------  105 (229)
T 3e6j_A           71 LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPS--------------------------------------------  105 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT--------------------------------------------
T ss_pred             CCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cCh--------------------------------------------
Confidence            99999886555667888888888888888873 221                                            


Q ss_pred             chhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736          257 PLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT  328 (500)
Q Consensus       257 p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~  328 (500)
                       ..|..+.+ |++|+|++|+++. +|..+..+++|++|+|++|+|++..+..+..+++|++|+|++|.+.+.
T Consensus       106 -~~~~~l~~-L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          106 -AVFDRLVH-LKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             -TTTTTCTT-CCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             -hHhCcchh-hCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence             11222333 5555555555552 455555555666666666666544444455566666666666665543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=1e-18  Score=169.47  Aligned_cols=189  Identities=19%  Similarity=0.231  Sum_probs=128.5

Q ss_pred             EEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC
Q 041736          124 VAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY  203 (500)
Q Consensus       124 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  203 (500)
                      +..+++..+.+.+..  .+..+.+|++|++++|.++. ++ .+..+++|++|+|++|++++..+  +..+++|++|+|++
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            344455555555432  34568899999999999984 44 58999999999999999996544  89999999999999


Q ss_pred             CcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCcc
Q 041736          204 NEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPE  283 (500)
Q Consensus       204 N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~  283 (500)
                      |++++ ++......+|++|++++|++++                       .  ..+..+.+ |++|++++|.+++.  .
T Consensus       100 n~l~~-~~~l~~l~~L~~L~L~~n~i~~-----------------------~--~~l~~l~~-L~~L~l~~n~l~~~--~  150 (291)
T 1h6t_A          100 NKVKD-LSSLKDLKKLKSLSLEHNGISD-----------------------I--NGLVHLPQ-LESLYLGNNKITDI--T  150 (291)
T ss_dssp             SCCCC-GGGGTTCTTCCEEECTTSCCCC-----------------------C--GGGGGCTT-CCEEECCSSCCCCC--G
T ss_pred             CcCCC-ChhhccCCCCCEEECCCCcCCC-----------------------C--hhhcCCCC-CCEEEccCCcCCcc--h
Confidence            99984 4432222556666665555543                       1  34555554 66666766666663  4


Q ss_pred             ccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736          284 EIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG  351 (500)
Q Consensus       284 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  351 (500)
                      .+..+++|++|+|++|++++..+  +..+++|+.|+|++|.+++ ++ .+..+++|+.|++++|.++.
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            56666677777777777664333  6666677777777776663 33 36666677777777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=2.2e-19  Score=191.03  Aligned_cols=103  Identities=25%  Similarity=0.374  Sum_probs=54.1

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|+|++|.+... + .|..+++|++|+|++|.|++..+  +..+.+|++|+|++|++++ ++ .+..+++|++|+
T Consensus        42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence            34555666666665442 2 35556666666666666654332  5566666666666666653 22 455566666666


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCcc
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFS  230 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~  230 (500)
                      |++|++++ ++......+|+.|+|++|+++
T Consensus       116 Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A          116 LEHNGISD-INGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             CTTSCCCC-CGGGGGCTTCSEEECCSSCCC
T ss_pred             ecCCCCCC-CccccCCCccCEEECCCCccC
Confidence            66666552 222222244444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=3.9e-20  Score=201.46  Aligned_cols=253  Identities=17%  Similarity=0.161  Sum_probs=100.4

Q ss_pred             HHHHHHHHHhccCCCCCCCCCCCC--CCCCCcCceecCCCCCCCCcCcEEEEECCCCCCcccCchhhcCCCCC-----CE
Q 041736           78 YIALQAWKKAIISDPWNLTSNWVG--CYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASYLPEELGLLADI-----AL  150 (500)
Q Consensus        78 ~~~l~~~~~~~~~~~~~~~~~w~~--~~~c~~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L-----~~  150 (500)
                      +.++..+...+....|.....|..  ...+.|.++.+..       .+++.|+|.+|.+... +..+.....|     ..
T Consensus       134 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-------~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~  205 (727)
T 4b8c_D          134 KQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-------PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDE  205 (727)
T ss_dssp             CHHHHHHHHHHHHHHTTC--------------------------------------------------------------
T ss_pred             hhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-------CccceEEeeCCCCCcc-hhhHhhcCccCcccccC
Confidence            556666666655555656666743  2345677666532       5678888888777653 2222111112     22


Q ss_pred             EEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCc
Q 041736          151 FHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRF  229 (500)
Q Consensus       151 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l  229 (500)
                      +++..|.+. ..+..+..+.+|++|+|++|.+. .++..+..+++|++|+|++|.|+ .+|..+.. .+|++|+|++|+|
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            222233333 34566777777777777777777 56666667777777777777777 66665544 6677777777776


Q ss_pred             cCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCC-ccEEeccCcccCCCChh
Q 041736          230 SFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKN-VTVFDVSYNKLMGELPD  307 (500)
Q Consensus       230 ~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~  307 (500)
                      + .+|..++. .+|++|+|++|.++ .+|..|+.+.+ |++|+|++|.|++.+|..+..+.. +..|+|++|.++|.+|.
T Consensus       283 ~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          283 T-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCN-LQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             S-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTT-CCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             C-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCC-ccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            6 55655544 55666666666665 55666666665 666677666666666655544321 22356666666666554


Q ss_pred             hhhCCCCCcEEEcccC--------CCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736          308 TIAEMTSLQQLNVAHN--------MLSGTVPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       308 ~l~~l~~L~~L~L~~N--------~l~g~ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      .      |+.|++++|        .+.+.++..+.++..+....+++|.+.
T Consensus       360 ~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          360 E------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             C-----------------------------------------------CCC
T ss_pred             c------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            3      334444444        222222333344445555556666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=9.5e-22  Score=207.90  Aligned_cols=191  Identities=21%  Similarity=0.231  Sum_probs=143.9

Q ss_pred             cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCc-------------CCCcCchhccCCCCCcEEe-ccCCcCCC
Q 041736          143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR-------------FAGKFPYVVLGLPKLKFLD-LRYNEFEG  208 (500)
Q Consensus       143 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-------------l~~~~p~~l~~l~~L~~L~-Ls~N~l~g  208 (500)
                      ..+.+|+.|+|++|.++ .+|..++++++|++|++++|.             +.+.++..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            45677777788887776 677777777778877776664             4455666666667777776 5555432 


Q ss_pred             CCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccC
Q 041736          209 KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLL  288 (500)
Q Consensus       209 ~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l  288 (500)
                               +|+.+.+.+|.++.. +    ...|+.|+|++|.+++ +|. |+.+.. |++|+|++|.|+ .+|..++.+
T Consensus       424 ---------~L~~l~l~~n~i~~l-~----~~~L~~L~Ls~n~l~~-lp~-~~~l~~-L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLKM-E----YADVRVLHLAHKDLTV-LCH-LEQLLL-VTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHH-H----HTTCSEEECTTSCCSS-CCC-GGGGTT-CCEEECCSSCCC-CCCGGGGGC
T ss_pred             ---------hhhhhhhhccccccc-C----ccCceEEEecCCCCCC-CcC-cccccc-CcEeecCccccc-ccchhhhcC
Confidence                     233444555555421 1    1247888888888885 565 888886 999999999998 578889999


Q ss_pred             CCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCC-chhhcCCCCCcEEEccCCcCccCCCC
Q 041736          289 KNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTV-PDSVCSLPNLRNFSFDYNFFTGESPV  355 (500)
Q Consensus       289 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~~p~  355 (500)
                      ++|++|+|++|+|++ +| .++.+++|++|+|++|.|++.. |..+..+++|++|+|++|.|++.++.
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            999999999999985 67 7888999999999999998776 88888999999999999999887664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=2e-18  Score=183.55  Aligned_cols=190  Identities=18%  Similarity=0.232  Sum_probs=129.3

Q ss_pred             EEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC
Q 041736          124 VAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY  203 (500)
Q Consensus       124 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~  203 (500)
                      +..+++..+.+...+.  +..|.+|+.|+|++|.+.. ++ .|..+++|++|+|++|++++..+  +..+++|++|+|++
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence            3444555555544332  4566777777888777763 33 47777778888888887775443  77777788888888


Q ss_pred             CcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCcc
Q 041736          204 NEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPE  283 (500)
Q Consensus       204 N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~  283 (500)
                      |.+++ ++......+|++|+|++|++.+ ++......+|+.|+|++|.+++.  ..+..+.+ |++|+|++|.+.+..+ 
T Consensus        97 N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~-L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A           97 NKIKD-LSSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             SCCCC-CTTSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTT-CSEEECCSSCCCCCGG-
T ss_pred             CCCCC-ChhhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCC-CCEEECcCCcCCCchh-
Confidence            87773 4432233677788888877774 34444446777888888877754  56777775 8888888887777544 


Q ss_pred             ccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736          284 EIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGT  328 (500)
Q Consensus       284 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~  328 (500)
                       +..+++|+.|+|++|+|++ + ..+..+++|+.|+|++|.+.+.
T Consensus       171 -l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             -hccCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence             7777788888888887774 3 3577777888888887777643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3.1e-18  Score=159.08  Aligned_cols=156  Identities=21%  Similarity=0.258  Sum_probs=112.4

Q ss_pred             CEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccc
Q 041736          173 FELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKF  252 (500)
Q Consensus       173 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l  252 (500)
                      +++++++|.++ .+|..+.  ..+++|+|++|++++..+...+                     -...+|++|+|++|.+
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~---------------------~~l~~L~~L~L~~N~i   69 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIF---------------------KKLPQLRKINFSNNKI   69 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCG---------------------GGCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhh---------------------ccCCCCCEEECCCCcC
Confidence            46777777776 4554442  3456666666666633222111                     1224566666666666


Q ss_pred             cccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchh
Q 041736          253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDS  332 (500)
Q Consensus       253 ~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~  332 (500)
                      ++..+..|..+.+ |++|+|++|.+++..+..|..+++|++|+|++|+|++..+..+..+.+|++|+|++|.|++..+..
T Consensus        70 ~~i~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           70 TDIEEGAFEGASG-VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             CEECTTTTTTCTT-CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             CEECHHHhCCCCC-CCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence            6666667777776 888888888888877777888888888888888888777888888888888888888888777888


Q ss_pred             hcCCCCCcEEEccCCcCccCC
Q 041736          333 VCSLPNLRNFSFDYNFFTGES  353 (500)
Q Consensus       333 l~~l~~L~~L~Ls~N~l~g~~  353 (500)
                      |..+++|++|+|++|.+++..
T Consensus       149 ~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          149 FDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             TTTCTTCCEEECCSCCEECSG
T ss_pred             hcCCCCCCEEEecCcCCcCCC
Confidence            888888888888888887654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.5e-18  Score=172.07  Aligned_cols=175  Identities=23%  Similarity=0.294  Sum_probs=113.1

Q ss_pred             EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCcccc-CCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736          126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFN-KLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN  204 (500)
Q Consensus       126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  204 (500)
                      .++++++++.. +|..+.  ..+++|+|++|.|++..+..|. ++.+|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus        22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            57788888766 555443  4688999999999877777777 8999999999999999777778888999999999988


Q ss_pred             cCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccc
Q 041736          205 EFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE  284 (500)
Q Consensus       205 ~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~  284 (500)
                      ++++ ++...+.                     +..+|++|+|++|.+.+..+..|..+.+ |++|+|++|+|++.....
T Consensus        99 ~l~~-~~~~~~~---------------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           99 HLHT-LDEFLFS---------------------DLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             CCCE-ECTTTTT---------------------TCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCCSCCGGG
T ss_pred             cCCc-CCHHHhC---------------------CCcCCCEEECCCCcccEECHHHhCCccc-CCEEECCCCcCCeeCHHH
Confidence            8873 2211110                     1133444455555554444555666665 666666666666633333


Q ss_pred             c---ccCCCccEEeccCcccCCCChhhhhCCCC--CcEEEcccCCCC
Q 041736          285 I---GLLKNVTVFDVSYNKLMGELPDTIAEMTS--LQQLNVAHNMLS  326 (500)
Q Consensus       285 ~---~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~N~l~  326 (500)
                      +   ..+++|+.|||++|+|++.....+..++.  |+.|+|++|.+.
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            3   44666666666666666444445555554  255666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=5.8e-18  Score=157.24  Aligned_cols=153  Identities=16%  Similarity=0.216  Sum_probs=111.0

Q ss_pred             CEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEecccc
Q 041736          173 FELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNK  251 (500)
Q Consensus       173 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~  251 (500)
                      +.++++++.++ .+|..+.  .+|++|+|++|+++                       +..+..+. ..+|++|+|++|.
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-----------------------~i~~~~~~~l~~L~~L~Ls~N~   67 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-----------------------VIPPGAFSPYKKLRRIDLSNNQ   67 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-----------------------EECTTSSTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-----------------------CcCHhHhhCCCCCCEEECCCCc
Confidence            45666666666 4454332  45666666666655                       22222222 2457777777777


Q ss_pred             ccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCch
Q 041736          252 FHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPD  331 (500)
Q Consensus       252 l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~  331 (500)
                      +++..+..|..+.+ |++|+|++|.|++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|++|.|++..+.
T Consensus        68 i~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B           68 ISELAPDAFQGLRS-LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             CCEECTTTTTTCSS-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CCCcCHHHhhCCcC-CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence            77667778888876 88888888888876666678888888888888888877778888888888888888888877667


Q ss_pred             hhcCCCCCcEEEccCCcCccC
Q 041736          332 SVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       332 ~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      .+..+++|++|+|++|.+...
T Consensus       147 ~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          147 TFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             TTTTCTTCCEEECCSSCEECS
T ss_pred             HHhCCCCCCEEEeCCCCcCCC
Confidence            788888888888888887653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=1e-18  Score=166.91  Aligned_cols=168  Identities=18%  Similarity=0.280  Sum_probs=102.8

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+++.++++++.+.+..  .+..+.+|++|++++|.++ .++ .+..+++|++|+|++|++++..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            456677778888877643  5677888888888888887 455 67888888888888888885443  78888888888


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      |++|++++ ++.... .+|++|++++|++++                       .  ..+..+.+ |++|++++|++++.
T Consensus        92 L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-----------------------~--~~l~~l~~-L~~L~Ls~N~i~~~  143 (263)
T 1xeu_A           92 VNRNRLKN-LNGIPS-ACLSRLFLDNNELRD-----------------------T--DSLIHLKN-LEILSIRNNKLKSI  143 (263)
T ss_dssp             CCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-----------------------S--GGGTTCTT-CCEEECTTSCCCBC
T ss_pred             CCCCccCC-cCcccc-CcccEEEccCCccCC-----------------------C--hhhcCccc-ccEEECCCCcCCCC
Confidence            88888873 333222 444444444444432                       1  12444443 55555555555442


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS  326 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  326 (500)
                       + .+..+++|++|+|++|++++.  ..+..+++|+.|+|++|.++
T Consensus       144 -~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          144 -V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             -G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             -h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence             2 344555555555555555533  33444555555555555444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=9.5e-18  Score=155.79  Aligned_cols=151  Identities=25%  Similarity=0.341  Sum_probs=100.4

Q ss_pred             EEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736          126 GIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE  205 (500)
Q Consensus       126 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  205 (500)
                      .+++++++++. +|..+.  .+|++|+|++|.|++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus        15 ~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           15 IVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            45666666654 454443  688999999999987777788889999999999999987778888888889999888888


Q ss_pred             CCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCcccc
Q 041736          206 FEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEI  285 (500)
Q Consensus       206 l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~  285 (500)
                      ++ .++...                                             |..+.+ |++|+|++|.+++..+..|
T Consensus        92 l~-~l~~~~---------------------------------------------f~~l~~-L~~L~L~~N~l~~~~~~~~  124 (220)
T 2v9t_B           92 IT-ELPKSL---------------------------------------------FEGLFS-LQLLLLNANKINCLRVDAF  124 (220)
T ss_dssp             CC-CCCTTT---------------------------------------------TTTCTT-CCEEECCSSCCCCCCTTTT
T ss_pred             CC-ccCHhH---------------------------------------------ccCCCC-CCEEECCCCCCCEeCHHHc
Confidence            87 333221                                             222333 5555555555555545555


Q ss_pred             ccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736          286 GLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS  326 (500)
Q Consensus       286 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  326 (500)
                      ..+++|++|+|++|+|++..+..+..+++|++|+|++|.+.
T Consensus       125 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          125 QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            55555555555555555444444555555666666666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=1.9e-17  Score=154.68  Aligned_cols=155  Identities=21%  Similarity=0.193  Sum_probs=109.5

Q ss_pred             CCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEecccc
Q 041736          172 LFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNK  251 (500)
Q Consensus       172 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~  251 (500)
                      .+.+++++++++ .+|..+.  ++|++|+|++|++++..+..+.                      ...+|++|+|++|.
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~----------------------~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFD----------------------SLINLKELYLGSNQ   75 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTT----------------------TCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhh----------------------CccCCcEEECCCCC
Confidence            455666666665 4444332  5566666666666543332221                      12456666666666


Q ss_pred             ccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCch
Q 041736          252 FHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPD  331 (500)
Q Consensus       252 l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~  331 (500)
                      +.+..+..|..+.+ |++|+|++|++++..+..+..+++|++|+|++|+|+ .+|..+..+++|++|+|++|.|++..+.
T Consensus        76 l~~i~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~  153 (229)
T 3e6j_A           76 LGALPVGVFDSLTQ-LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG  153 (229)
T ss_dssp             CCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred             CCCcChhhcccCCC-cCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence            65444455677776 888899888888876777788888999999999888 7788888888899999999988866666


Q ss_pred             hhcCCCCCcEEEccCCcCccCC
Q 041736          332 SVCSLPNLRNFSFDYNFFTGES  353 (500)
Q Consensus       332 ~l~~l~~L~~L~Ls~N~l~g~~  353 (500)
                      .+..+++|++|++++|.+.+..
T Consensus       154 ~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          154 AFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTTCTTCCEEECTTSCBCTTB
T ss_pred             HHhCCCCCCEEEeeCCCccCCc
Confidence            7888888888888888887654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=6e-18  Score=154.29  Aligned_cols=153  Identities=13%  Similarity=0.229  Sum_probs=85.3

Q ss_pred             cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeE
Q 041736          143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAV  222 (500)
Q Consensus       143 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L  222 (500)
                      +.+.+|++|++++|.++ .++ .+..+++|++|++++|.++. + ..+..+++|++|++++|++++              
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~--------------  102 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTS--------------  102 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBG--------------
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCc--------------
Confidence            34556666666666666 444 46666666666666665542 2 245555555555555555542              


Q ss_pred             EccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcc-c
Q 041736          223 FINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK-L  301 (500)
Q Consensus       223 ~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l  301 (500)
                                                      ..+..++.+.+ |++|++++|.+++..+..++.+++|++|+|++|. +
T Consensus       103 --------------------------------~~~~~l~~l~~-L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i  149 (197)
T 4ezg_A          103 --------------------------------DKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI  149 (197)
T ss_dssp             --------------------------------GGSCCCTTCTT-CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBC
T ss_pred             --------------------------------ccChhhcCCCC-CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCc
Confidence                                            22233444443 6666666666665555556666666666666665 3


Q ss_pred             CCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736          302 MGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       302 ~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      + .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|++.
T Consensus       150 ~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          150 T-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             C-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             c-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            3 444 45666666666666666654 22 4556666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.74  E-value=4.8e-21  Score=202.55  Aligned_cols=203  Identities=15%  Similarity=0.136  Sum_probs=161.6

Q ss_pred             CcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCC-------------CCccCCccccCCCCCCEEe-CcCCcCCCc
Q 041736          120 SIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNR-------------FCGTLPRSFNKLKLLFELD-LSNNRFAGK  185 (500)
Q Consensus       120 ~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-Ls~n~l~~~  185 (500)
                      ...+++.|+|++|.+. .+|..++++++|+.|++++|.             +.+.++..++.+.+|+.|+ ++.|.+.  
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~--  423 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD--  423 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence            4567778999999986 589999999999999998775             5677888899999999999 7776543  


Q ss_pred             CchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccc
Q 041736          186 FPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSR  265 (500)
Q Consensus       186 ~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~  265 (500)
                               .|+.+.+++|.++ .++.    ..|+.|++++|++++ +|..-...+|+.|+|++|.++ .+|..|+.+.+
T Consensus       424 ---------~L~~l~l~~n~i~-~l~~----~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  487 (567)
T 1dce_A          424 ---------DLRSKFLLENSVL-KMEY----ADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC  487 (567)
T ss_dssp             ---------HHHHHHHHHHHHH-HHHH----TTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             ---------hhhhhhhhccccc-ccCc----cCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCC
Confidence                     3444555666554 1221    346777777777775 555333367889999999988 78899999997


Q ss_pred             cCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCC-hhhhhCCCCCcEEEcccCCCCCCCch---hhcCCCCCcE
Q 041736          266 TLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGEL-PDTIAEMTSLQQLNVAHNMLSGTVPD---SVCSLPNLRN  341 (500)
Q Consensus       266 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~g~ip~---~l~~l~~L~~  341 (500)
                       |++|+|++|.|++ +| .++.+++|++|+|++|+|++.. |..++.+++|+.|+|++|.|++..+.   .+..+++|+.
T Consensus       488 -L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          488 -LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             -CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             -CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence             9999999999998 67 8999999999999999999876 89999999999999999999876543   2345788988


Q ss_pred             EEc
Q 041736          342 FSF  344 (500)
Q Consensus       342 L~L  344 (500)
                      ||+
T Consensus       565 L~l  567 (567)
T 1dce_A          565 ILT  567 (567)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1.6e-17  Score=154.32  Aligned_cols=156  Identities=19%  Similarity=0.277  Sum_probs=123.5

Q ss_pred             CEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc-hhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCC
Q 041736          149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP-YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNN  227 (500)
Q Consensus       149 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n  227 (500)
                      +++++++|.++ .+|..+.  ..+++|+|++|++++..+ ..|..+++|++|+|++|++++..+..+.            
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~------------   78 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE------------   78 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT------------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC------------
Confidence            58999999998 5776654  357999999999997644 4588999999999999999843332221            


Q ss_pred             CccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChh
Q 041736          228 RFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD  307 (500)
Q Consensus       228 ~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~  307 (500)
                                +..+|++|+|++|.+++..+..|..+.+ |++|+|++|++++..+..|..+++|++|+|++|+|++..+.
T Consensus        79 ----------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           79 ----------GASGVNEILLTSNRLENVQHKMFKGLES-LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             ----------TCTTCCEEECCSSCCCCCCGGGGTTCSS-CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             ----------CCCCCCEEECCCCccCccCHhHhcCCcC-CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence                      1245666666666666666667788886 99999999999988888888999999999999999987788


Q ss_pred             hhhCCCCCcEEEcccCCCCCCCc
Q 041736          308 TIAEMTSLQQLNVAHNMLSGTVP  330 (500)
Q Consensus       308 ~l~~l~~L~~L~L~~N~l~g~ip  330 (500)
                      .+..+++|++|+|++|.+.+..+
T Consensus       148 ~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEECSGG
T ss_pred             HhcCCCCCCEEEecCcCCcCCCc
Confidence            88889999999999998876543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.2e-17  Score=167.23  Aligned_cols=175  Identities=18%  Similarity=0.170  Sum_probs=134.4

Q ss_pred             CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhc-CCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcC
Q 041736          105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELG-LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSN  179 (500)
Q Consensus       105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  179 (500)
                      |.+..+.|....    ...-...++.|+|++|.|++..+..|. .+.+|++|+|++|.|++..+..|.++.+|++|+|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            556667775321    112234588999999999998888887 999999999999999988888899999999999999


Q ss_pred             CcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCch
Q 041736          180 NRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPL  258 (500)
Q Consensus       180 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~  258 (500)
                      |+|++..+..|..+.+|++|+|++|++++..+..+.. .+|++|+|++|                       .+++....
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-----------------------~l~~l~~~  154 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-----------------------QISRFPVE  154 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-----------------------CCCSCCGG
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-----------------------cCCeeCHH
Confidence            9999777778999999999999999998544433322 45555555555                       44432222


Q ss_pred             hh---hcccccCcEEEeccCCCCCCCccccccCCC--ccEEeccCcccCC
Q 041736          259 SF---GNMSRTLNEVILTNNGLHSCLPEEIGLLKN--VTVFDVSYNKLMG  303 (500)
Q Consensus       259 ~l---~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~Ls~n~l~~  303 (500)
                      .|   ..+.+ |++|+|++|+|++.....+..+..  |+.|+|++|.+.-
T Consensus       155 ~~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          155 LIKDGNKLPK-LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             GTC----CTT-CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             HhcCcccCCc-CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            23   45676 999999999999876678888887  4899999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.72  E-value=6.1e-18  Score=161.57  Aligned_cols=172  Identities=19%  Similarity=0.222  Sum_probs=135.3

Q ss_pred             CCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEE
Q 041736          144 LLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVF  223 (500)
Q Consensus       144 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~  223 (500)
                      .+.+++.+++++|.+++..  .+..+.+|++|++++|.++ .++ .+..+++|++|+|++|++++ ++......+|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEE
Confidence            4566778889999988443  5788999999999999998 455 68888999999999999884 33311225566666


Q ss_pred             ccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC
Q 041736          224 INNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG  303 (500)
Q Consensus       224 l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  303 (500)
                      +++|++++                        ++. +.. .+ |++|+|++|++++.  ..+..+++|++|+|++|+|++
T Consensus        92 L~~N~l~~------------------------l~~-~~~-~~-L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           92 VNRNRLKN------------------------LNG-IPS-AC-LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CCSSCCSC------------------------CTT-CCC-SS-CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCCccCC------------------------cCc-ccc-Cc-ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence            65555542                        111 112 44 99999999999984  468999999999999999995


Q ss_pred             CChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCC
Q 041736          304 ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES  353 (500)
Q Consensus       304 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~  353 (500)
                       ++ .+..+++|++|+|++|.+++.  ..+..+++|++|++++|.+++..
T Consensus       143 -~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          143 -IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             -Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence             44 688999999999999999976  67899999999999999998763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=8.1e-19  Score=187.20  Aligned_cols=133  Identities=11%  Similarity=0.013  Sum_probs=90.4

Q ss_pred             CCcceEEeccccccccCchhhhc-ccccCcEEEec----cCCCCCC-----CccccccCCCccEEeccCcc--cCCCChh
Q 041736          240 SPVSVLVLANNKFHGCLPLSFGN-MSRTLNEVILT----NNGLHSC-----LPEEIGLLKNVTVFDVSYNK--LMGELPD  307 (500)
Q Consensus       240 ~~L~~L~l~~n~l~~~~p~~l~~-l~~~L~~L~Ls----~n~l~~~-----~p~~~~~l~~L~~L~Ls~n~--l~~~~p~  307 (500)
                      .+|++|++..|.+++.....++. +.+ |++|+++    .|.+++.     ++..+.++++|++|+|++|.  +++....
T Consensus       378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~-L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          378 QELEYMAVYVSDITNESLESIGTYLKN-LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             TTCSEEEEEESCCCHHHHHHHHHHCCS-CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             ccCeEEEeecCCccHHHHHHHHhhCCC-CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence            56777777777777665556655 554 8888885    5566653     33345667888888886533  5554444


Q ss_pred             hhh-CCCCCcEEEcccCCCCC-CCchhhcCCCCCcEEEccCCcCccCC-C----CCccCCEEEcCCCCCCCCC
Q 041736          308 TIA-EMTSLQQLNVAHNMLSG-TVPDSVCSLPNLRNFSFDYNFFTGES-P----VCLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       308 ~l~-~l~~L~~L~L~~N~l~g-~ip~~l~~l~~L~~L~Ls~N~l~g~~-p----~~~~L~~l~l~~N~l~~~~  373 (500)
                      .+. .+++|++|+|++|.+++ .++..+..+++|++|++++|.|++.. +    .+..|+.|++++|.+++..
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~  529 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG  529 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred             HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence            443 47788888888888876 34555677888899999988876442 1    2456888899888877653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=8.2e-18  Score=183.12  Aligned_cols=193  Identities=18%  Similarity=0.185  Sum_probs=124.0

Q ss_pred             EEEEECCCCCCcc---------cCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCC
Q 041736          124 VAGIDLNHGDIAS---------YLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLP  194 (500)
Q Consensus       124 l~~L~L~~n~l~~---------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  194 (500)
                      ++.++|+.+.|.+         ..+..+..+.+|+.|+|++|.+. .++..+.++++|++|+|++|.|+ .+|..|.+|+
T Consensus       193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  270 (727)
T 4b8c_D          193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS  270 (727)
T ss_dssp             -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred             hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence            4455555555433         34677889999999999999998 78888889999999999999999 8899999999


Q ss_pred             CCcEEeccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEe
Q 041736          195 KLKFLDLRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVIL  272 (500)
Q Consensus       195 ~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~L  272 (500)
                      +|++|+|++|+|+ .+|..+.. .+|++|+|++|.++ .+|..++. .+|++|+|++|.+++.++..+..+...+..|+|
T Consensus       271 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l  348 (727)
T 4b8c_D          271 NLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL  348 (727)
T ss_dssp             TCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence            9999999999999 88887766 89999999999997 77877765 789999999999999999888776433456889


Q ss_pred             ccCCCCCCCccccccCCCccEEeccCc--------ccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736          273 TNNGLHSCLPEEIGLLKNVTVFDVSYN--------KLMGELPDTIAEMTSLQQLNVAHNMLS  326 (500)
Q Consensus       273 s~n~l~~~~p~~~~~l~~L~~L~Ls~n--------~l~~~~p~~l~~l~~L~~L~L~~N~l~  326 (500)
                      ++|.+++.+|..      |+.|+++.|        .+.+.++..+..+..++...+++|-+.
T Consensus       349 ~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          349 RDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred             ccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            999999988764      555667666        344444445566677777888888775

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=2e-18  Score=184.23  Aligned_cols=247  Identities=13%  Similarity=0.097  Sum_probs=126.3

Q ss_pred             CcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCCCC----ccCCccccCCCCCCEEeCcCCcCCCcCchhccCC
Q 041736          122 RTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNRFC----GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGL  193 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  193 (500)
                      ++|++|+|++|.+.+.    +...+..+++|++|+|++|.++    +.++..+.++++|++|+|++|.+.+ ++..+..+
T Consensus       164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~  242 (592)
T 3ogk_B          164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAA  242 (592)
T ss_dssp             TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHC
T ss_pred             CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhh
Confidence            5666777777766544    3334455666777777766665    2233344556667777777666553 34444444


Q ss_pred             CCCcEEeccCCcC--------------------------CCCCchhhcC-CCCCeEEccCCCccCCCCC-cc-CCCCcce
Q 041736          194 PKLKFLDLRYNEF--------------------------EGKIPKALFD-KDLDAVFINNNRFSFELPD-NI-GNSPVSV  244 (500)
Q Consensus       194 ~~L~~L~Ls~N~l--------------------------~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~-~~-~~~~L~~  244 (500)
                      ++|++|+++.+..                          .+.++..+.. .+|++|++++|.+++.... .+ ...+|++
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~  322 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV  322 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence            5555554442110                          1122222222 5777777777775432221 11 1234555


Q ss_pred             EEecc-----------------------------------ccccccCchh-hhcccccCcEEEeccCCCCCCCcccccc-
Q 041736          245 LVLAN-----------------------------------NKFHGCLPLS-FGNMSRTLNEVILTNNGLHSCLPEEIGL-  287 (500)
Q Consensus       245 L~l~~-----------------------------------n~l~~~~p~~-l~~l~~~L~~L~Ls~n~l~~~~p~~~~~-  287 (500)
                      |++++                                   |.+++..... +..+.+ |++|+++.|++++.....+.. 
T Consensus       323 L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~l~~~~~~~l~~~  401 (592)
T 3ogk_B          323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE-LEYMAVYVSDITNESLESIGTY  401 (592)
T ss_dssp             EEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT-CSEEEEEESCCCHHHHHHHHHH
T ss_pred             EeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc-CeEEEeecCCccHHHHHHHHhh
Confidence            55542                                   2232211111 122333 555555555555433333433 


Q ss_pred             CCCccEEecc----CcccCCC-----ChhhhhCCCCCcEEEcccC--CCCCCCchhhc-CCCCCcEEEccCCcCccC---
Q 041736          288 LKNVTVFDVS----YNKLMGE-----LPDTIAEMTSLQQLNVAHN--MLSGTVPDSVC-SLPNLRNFSFDYNFFTGE---  352 (500)
Q Consensus       288 l~~L~~L~Ls----~n~l~~~-----~p~~l~~l~~L~~L~L~~N--~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~---  352 (500)
                      +++|+.|+++    .|.+++.     ++..+.++++|++|+|++|  .+++.....+. .+++|++|++++|.+++.   
T Consensus       402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  481 (592)
T 3ogk_B          402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM  481 (592)
T ss_dssp             CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred             CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence            5566666664    4455542     3333455666666666532  24443333332 367777888887777652   


Q ss_pred             --CCCCccCCEEEcCCCCCC
Q 041736          353 --SPVCLDLQGFDDKRNCLR  370 (500)
Q Consensus       353 --~p~~~~L~~l~l~~N~l~  370 (500)
                        +..+.+|+.|++++|.++
T Consensus       482 ~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          482 EFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             HHHTCCTTCCEEEEESCCCB
T ss_pred             HHHhcCcccCeeeccCCCCc
Confidence              123556888888888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.69  E-value=1.2e-16  Score=145.60  Aligned_cols=152  Identities=13%  Similarity=0.181  Sum_probs=117.4

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|++++|.+.. ++ .+..+++|++|++++|.++.  ...+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus        43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            4679999999999984 55 68999999999999997762  34789999999999999999987888899999999999


Q ss_pred             ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCC
Q 041736          201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      |++|++++..+..+.. ++|++|++++|.+                      +. .++ .+..+.+ |++|++++|.+++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~----------------------i~-~~~-~l~~l~~-L~~L~l~~n~i~~  173 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGA----------------------IT-DIM-PLKTLPE-LKSLNIQFDGVHD  173 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTB----------------------CC-CCG-GGGGCSS-CCEEECTTBCCCC
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCC----------------------cc-ccH-hhcCCCC-CCEEECCCCCCcC
Confidence            9999998655554433 4555555555541                      22 333 5667776 8888888888887


Q ss_pred             CCccccccCCCccEEeccCcccCC
Q 041736          280 CLPEEIGLLKNVTVFDVSYNKLMG  303 (500)
Q Consensus       280 ~~p~~~~~l~~L~~L~Ls~n~l~~  303 (500)
                      . + .+..+++|++|++++|+|.+
T Consensus       174 ~-~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          174 Y-R-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             C-T-TGGGCSSCCEEEECBC----
T ss_pred             h-H-HhccCCCCCEEEeeCcccCC
Confidence            3 3 67888889999999888764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.68  E-value=1.4e-16  Score=144.61  Aligned_cols=113  Identities=20%  Similarity=0.264  Sum_probs=86.0

Q ss_pred             CcceEEeccccccccCch-hhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEE
Q 041736          241 PVSVLVLANNKFHGCLPL-SFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN  319 (500)
Q Consensus       241 ~L~~L~l~~n~l~~~~p~-~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  319 (500)
                      ++++|++++|.+++..+. .|+.+.+ |++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCC-CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence            566666666666654443 3677775 88888888888887777888888888888888888877777777888888888


Q ss_pred             cccCCCCCCCchhhcCCCCCcEEEccCCcCccCCC
Q 041736          320 VAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP  354 (500)
Q Consensus       320 L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p  354 (500)
                      |++|+|++.++..+..+++|++|+|++|.|++..+
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88888887777778888888888888888876643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=1.4e-15  Score=134.72  Aligned_cols=132  Identities=19%  Similarity=0.148  Sum_probs=69.4

Q ss_pred             CCCCEEEcCCCCCC-ccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEc
Q 041736          146 ADIALFHVNTNRFC-GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI  224 (500)
Q Consensus       146 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l  224 (500)
                      ++|++|+|++|.++ +.++..+..+++|++|+|++|.+++.  ..+..+++|++|+|++|++++.               
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~---------------   86 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG---------------   86 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC---------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH---------------
Confidence            45555555555554 44555555555555555555555533  4445555555555555554422               


Q ss_pred             cCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC-ccccccCCCccEEeccCcccCC
Q 041736          225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL-PEEIGLLKNVTVFDVSYNKLMG  303 (500)
Q Consensus       225 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~n~l~~  303 (500)
                                                     ++..+..+.+ |++|++++|.+++.. ...+..+++|++|++++|.+++
T Consensus        87 -------------------------------~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~  134 (168)
T 2ell_A           87 -------------------------------LDMLAEKLPN-LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN  134 (168)
T ss_dssp             -------------------------------CCHHHHHCTT-CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred             -------------------------------HHHHHhhCCC-CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence                                           2233333443 555555555555521 1455556666666666666664


Q ss_pred             CCh---hhhhCCCCCcEEEcccCCCC
Q 041736          304 ELP---DTIAEMTSLQQLNVAHNMLS  326 (500)
Q Consensus       304 ~~p---~~l~~l~~L~~L~L~~N~l~  326 (500)
                      ..+   ..+..+++|++|++++|.+.
T Consensus       135 ~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          135 LNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             STTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             hHHHHHHHHHhCccCcEecCCCCChh
Confidence            333   34555666666666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.3e-15  Score=138.23  Aligned_cols=133  Identities=20%  Similarity=0.208  Sum_probs=96.1

Q ss_pred             CEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccc
Q 041736          173 FELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKF  252 (500)
Q Consensus       173 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l  252 (500)
                      ++|++++|+++ .+|..+..  +|++|+|++|++++..+...                     .-...+|++|+|++|.+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~---------------------~~~l~~L~~L~Ls~N~l   66 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGL---------------------FGRLPHLVKLELKRNQL   66 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCS---------------------GGGCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccc---------------------cccCCCCCEEECCCCCC
Confidence            56777777775 55554432  66666666666653222211                     11224567777777777


Q ss_pred             cccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCc
Q 041736          253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVP  330 (500)
Q Consensus       253 ~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip  330 (500)
                      ++..+..|..+.+ |++|+|++|++++..+..|..+++|++|+|++|+|++..+..+..+++|++|+|++|.+++..+
T Consensus        67 ~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           67 TGIEPNAFEGASH-IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCBCTTTTTTCTT-CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCHhHcCCccc-CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            7666777888886 8888888888888777778888888888888888888888888888888999999888887654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=4.1e-15  Score=134.98  Aligned_cols=128  Identities=23%  Similarity=0.306  Sum_probs=97.0

Q ss_pred             eEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcc
Q 041736          221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK  300 (500)
Q Consensus       221 ~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~  300 (500)
                      ++++++|+++ .+|..+. .++++|++++|.++ .++..|..+.+ |++|+|++|.|++..+..|.++++|++|+|++|+
T Consensus        14 ~l~~~~~~l~-~ip~~~~-~~l~~L~L~~n~i~-~ip~~~~~l~~-L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP-RDVTELYLDGNQFT-LVPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC-TTCCEEECCSSCCC-SCCGGGGGCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC-CCCCEEECCCCcCc-hhHHHhhcccC-CCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3444444444 3343322 35677777777776 56677888886 8899999998888777788888899999999999


Q ss_pred             cCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736          301 LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       301 l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      |++..+..|..+++|++|+|++|.|++..+..|..+++|++|+|++|.+.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            8877777888888899999999988865555688888888888888887653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.4e-15  Score=131.84  Aligned_cols=82  Identities=21%  Similarity=0.284  Sum_probs=37.1

Q ss_pred             cEEEEECCCCCCc-ccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          123 TVAGIDLNHGDIA-SYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       123 ~l~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      +++.|++++|.+. +.++..+..+++|++|++++|.+++.  ..+..+++|++|+|++|.+++.++..+..+++|++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            4445555555544 34444444444444444444444432  33444444444444444444334444433444444444


Q ss_pred             cCCcC
Q 041736          202 RYNEF  206 (500)
Q Consensus       202 s~N~l  206 (500)
                      ++|++
T Consensus        96 s~N~i  100 (149)
T 2je0_A           96 SGNKI  100 (149)
T ss_dssp             TTSCC
T ss_pred             CCCcC
Confidence            44443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=7.5e-15  Score=131.16  Aligned_cols=114  Identities=21%  Similarity=0.262  Sum_probs=84.3

Q ss_pred             CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEE
Q 041736          240 SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLN  319 (500)
Q Consensus       240 ~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  319 (500)
                      .+++.|++++|.+.+..+..|..+.+ |++|++++|++++..+..+..+++|++|+|++|+|++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQ-LTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCccc-ccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            35666777777766555556677775 88888888888876666677888888888888888866666677788888888


Q ss_pred             cccCCCCCCCchhhcCCCCCcEEEccCCcCccCCC
Q 041736          320 VAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP  354 (500)
Q Consensus       320 L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p  354 (500)
                      |++|.+++..+..+..+++|++|++++|.+++..+
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88888875555556778888888888888776544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3.1e-15  Score=132.44  Aligned_cols=107  Identities=18%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             CcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCC-ChhhhhCCCCCcEEE
Q 041736          241 PVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE-LPDTIAEMTSLQQLN  319 (500)
Q Consensus       241 ~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~  319 (500)
                      +|++|++++|.+++.  ..+..+.+ |++|+|++|.+++.++..+..+++|++|+|++|+|++. ....+..+++|++|+
T Consensus        50 ~L~~L~l~~n~l~~~--~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  126 (168)
T 2ell_A           50 NLEFLSLINVGLISV--SNLPKLPK-LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD  126 (168)
T ss_dssp             GCCEEEEESSCCCCC--SSCCCCSS-CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred             CCCEEeCcCCCCCCh--hhhccCCC-CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence            344444444444432  44555554 66666666666655555555566666666666666532 114555666666666


Q ss_pred             cccCCCCCCCc---hhhcCCCCCcEEEccCCcCc
Q 041736          320 VAHNMLSGTVP---DSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       320 L~~N~l~g~ip---~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      |++|.+++..+   ..+..+++|++|++++|.+.
T Consensus       127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            66666654333   25556666666666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=2.7e-15  Score=130.09  Aligned_cols=101  Identities=16%  Similarity=0.188  Sum_probs=45.3

Q ss_pred             cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCC-ChhhhhCCCCCcEEEc
Q 041736          242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE-LPDTIAEMTSLQQLNV  320 (500)
Q Consensus       242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L  320 (500)
                      |++|++++|.+++.  ..++.+.+ |++|++++|.+++.++..+..+++|++|++++|++++. .+..+..+++|++|++
T Consensus        44 L~~L~l~~n~l~~~--~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           44 LEFLSTINVGLTSI--ANLPKLNK-LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             CCEEECTTSCCCCC--TTCCCCTT-CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred             CcEEECcCCCCCCc--hhhhcCCC-CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence            33344444433322  33444443 55555555555444444444445555555555554431 1234444555555555


Q ss_pred             ccCCCCCCCc---hhhcCCCCCcEEEcc
Q 041736          321 AHNMLSGTVP---DSVCSLPNLRNFSFD  345 (500)
Q Consensus       321 ~~N~l~g~ip---~~l~~l~~L~~L~Ls  345 (500)
                      ++|.+++..+   ..+..+++|++||++
T Consensus       121 ~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          121 FNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             cCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5555443332   234444455554443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2.3e-14  Score=128.00  Aligned_cols=103  Identities=20%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             CCcCceecCCCC----CCCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC
Q 041736          105 CNYTGVFCAQAL----DNHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN  180 (500)
Q Consensus       105 c~~~gv~c~~~~----~~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  180 (500)
                      |.|+++.|....    ......+++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            566666664310    0111234445555555544433334444455555555555554333333444455555555555


Q ss_pred             cCCCcCchhccCCCCCcEEeccCCcCC
Q 041736          181 RFAGKFPYVVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       181 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~  207 (500)
                      ++++..+..+..+++|++|+|++|+++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CccccCHHHhhCCcccCEEECcCCcce
Confidence            554433334444445555555555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=2.2e-16  Score=168.30  Aligned_cols=199  Identities=15%  Similarity=0.063  Sum_probs=118.6

Q ss_pred             CCCCCCEEeCcCCcCCCcC-chhccCCCCCcEEeccCCcCCCCCchhhc--CCCCCeEEccC---------CCccCCCCC
Q 041736          168 KLKLLFELDLSNNRFAGKF-PYVVLGLPKLKFLDLRYNEFEGKIPKALF--DKDLDAVFINN---------NRFSFELPD  235 (500)
Q Consensus       168 ~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~--~~~L~~L~l~~---------n~l~~~~p~  235 (500)
                      .+++|++|+|++|.+++.. ...+..+++|++|++++| ++......+.  .++|++|++.+         +.+++....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            3455666666665544321 222345566666666655 2211111111  25666666632         233221111


Q ss_pred             cc--CCCCcceEEeccccccccCchhhh-cccccCcEEEec--c----CCCCCC-----CccccccCCCccEEeccCccc
Q 041736          236 NI--GNSPVSVLVLANNKFHGCLPLSFG-NMSRTLNEVILT--N----NGLHSC-----LPEEIGLLKNVTVFDVSYNKL  301 (500)
Q Consensus       236 ~~--~~~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~Ls--~----n~l~~~-----~p~~~~~l~~L~~L~Ls~n~l  301 (500)
                      .+  +..+|+.|.+..|.+++.....+. .+.+ |++|+++  +    +++++.     +...+..+++|+.|+|++ .+
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l  443 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPN-MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LL  443 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT-CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC-cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cc
Confidence            11  135677777777777765555554 3555 8888888  3    455531     122356778888888877 66


Q ss_pred             CCCChhhhhC-CCCCcEEEcccCCCCCCCchhh-cCCCCCcEEEccCCcCccCCC-----CCccCCEEEcCCCCC
Q 041736          302 MGELPDTIAE-MTSLQQLNVAHNMLSGTVPDSV-CSLPNLRNFSFDYNFFTGESP-----VCLDLQGFDDKRNCL  369 (500)
Q Consensus       302 ~~~~p~~l~~-l~~L~~L~L~~N~l~g~ip~~l-~~l~~L~~L~Ls~N~l~g~~p-----~~~~L~~l~l~~N~l  369 (500)
                      ++.....+.. +++|++|+|++|.+++.....+ ..+++|++|+|++|.+++...     .+.+|+.|++++|.+
T Consensus       444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            6555555554 7889999999998876544444 568899999999998864322     245789999998877

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.55  E-value=6.6e-17  Score=147.46  Aligned_cols=62  Identities=21%  Similarity=0.312  Sum_probs=33.9

Q ss_pred             CCCCCCEEEcCCCCCCccCCc------cccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCC
Q 041736          144 LLADIALFHVNTNRFCGTLPR------SFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       144 ~l~~L~~L~L~~n~l~~~~p~------~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  207 (500)
                      ....++.++++.+.++|.++.      .|..+++|++|+|++|++++ ++ .+..+++|++|+|++|+++
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~   83 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK   83 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc
Confidence            344455555555555554443      55566666666666666653 44 4555555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.52  E-value=1.3e-15  Score=162.35  Aligned_cols=104  Identities=14%  Similarity=0.161  Sum_probs=62.3

Q ss_pred             CcEEEeccCCCCCCCccccc-cCCCccEEecc--C----cccCC-----CChhhhhCCCCCcEEEcccCCCCCCCchhhc
Q 041736          267 LNEVILTNNGLHSCLPEEIG-LLKNVTVFDVS--Y----NKLMG-----ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVC  334 (500)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls--~----n~l~~-----~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~  334 (500)
                      |++|++..|++++.....+. .+++|+.|+|+  +    +.+++     .+...+..+++|++|+|++ .+++.....+.
T Consensus       374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~  452 (594)
T 2p1m_B          374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIG  452 (594)
T ss_dssp             CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHH
T ss_pred             HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHH
Confidence            55555555555443333332 46677777776  3    44442     1122245667777777765 55544444444


Q ss_pred             C-CCCCcEEEccCCcCccCCC-----CCccCCEEEcCCCCCCC
Q 041736          335 S-LPNLRNFSFDYNFFTGESP-----VCLDLQGFDDKRNCLRD  371 (500)
Q Consensus       335 ~-l~~L~~L~Ls~N~l~g~~p-----~~~~L~~l~l~~N~l~~  371 (500)
                      . +++|++|+|++|.+++...     .+.+|+.|++++|.+++
T Consensus       453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~  495 (594)
T 2p1m_B          453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD  495 (594)
T ss_dssp             HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred             HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence            4 7788999999988865432     25578999999998743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=2.7e-14  Score=140.77  Aligned_cols=189  Identities=12%  Similarity=0.023  Sum_probs=122.5

Q ss_pred             CCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCC--cc---CCCC--CccC---
Q 041736          169 LKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNR--FS---FELP--DNIG---  238 (500)
Q Consensus       169 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~--l~---~~~p--~~~~---  238 (500)
                      +.+|++|+|.+ .++..-...|.++.+|+.|++++|.+. .++...|...+..+.+..+.  ..   ..+.  .+..   
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            88888888888 777555667888888888888888876 55555555333333332221  10   0000  0001   


Q ss_pred             -----------------------CCCcceEEeccccccccCchhhh-cccccCcEEEeccCCCCCCCccccccCCCccEE
Q 041736          239 -----------------------NSPVSVLVLANNKFHGCLPLSFG-NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF  294 (500)
Q Consensus       239 -----------------------~~~L~~L~l~~n~l~~~~p~~l~-~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  294 (500)
                                             ..++..+.+.++-.. .....+. .+.+ |++|+|++|+++..-...|.++.+|+.|
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~-L~~l~L~~n~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPN-LVSLDISKTNATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTT-CCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCC-CeEEECCCCCcceecHhhhhCCCCCCEE
Confidence                                   122333333332111 1111122 2454 9999999999988777789999999999


Q ss_pred             eccCcccCCCChhhhhCCCCCc-EEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC----CccCCEEE
Q 041736          295 DVSYNKLMGELPDTIAEMTSLQ-QLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV----CLDLQGFD  363 (500)
Q Consensus       295 ~Ls~n~l~~~~p~~l~~l~~L~-~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~----~~~L~~l~  363 (500)
                      +|.+| ++..-...|.++.+|+ .|++.+ .++..-...|.++.+|+.|+++.|.++.....    |.+|+.+.
T Consensus       256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            99998 7755567788999999 999988 67645567899999999999999988755443    34566654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=1.4e-16  Score=145.29  Aligned_cols=81  Identities=20%  Similarity=0.240  Sum_probs=65.7

Q ss_pred             EEEEECCCCCCcccCch------hhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          124 VAGIDLNHGDIASYLPE------ELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       124 l~~L~L~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      ++.++++.+.+.|.++.      .|..+++|++|+|++|.+++ ++ .+.++++|++|+|++|+++ .++..+..+++|+
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~   96 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence            44445555555555544      89999999999999999996 67 8999999999999999998 6777777778888


Q ss_pred             EEeccCCcCC
Q 041736          198 FLDLRYNEFE  207 (500)
Q Consensus       198 ~L~Ls~N~l~  207 (500)
                      +|+|++|+++
T Consensus        97 ~L~L~~N~l~  106 (198)
T 1ds9_A           97 ELWISYNQIA  106 (198)
T ss_dssp             EEEEEEEECC
T ss_pred             EEECcCCcCC
Confidence            8888888876

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=8.5e-14  Score=126.24  Aligned_cols=128  Identities=23%  Similarity=0.305  Sum_probs=93.3

Q ss_pred             CEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccc
Q 041736          173 FELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKF  252 (500)
Q Consensus       173 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l  252 (500)
                      +++++++|.++ .+|..+.  .+|++|+|++|+++ .++..+..                      ..+|++|+|++|.+
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~----------------------l~~L~~L~Ls~N~i   66 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN----------------------YKHLTLIDLSNNRI   66 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG----------------------CTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc----------------------ccCCCEEECCCCcC
Confidence            56777777777 5555442  46777777777776 44432221                      24566666666666


Q ss_pred             cccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736          253 HGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG  327 (500)
Q Consensus       253 ~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g  327 (500)
                      ++..+..|..+.+ |++|+|++|.+++..+..|..+++|++|+|++|+|++..+..+..+++|+.|+|++|.+..
T Consensus        67 ~~i~~~~f~~l~~-L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           67 STLSNQSFSNMTQ-LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCCTTTTTTCTT-CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEeCHhHccCCCC-CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            6666667778886 8889999998888777788888899999999999886555568888889999999988864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=9.1e-14  Score=124.02  Aligned_cols=57  Identities=28%  Similarity=0.356  Sum_probs=27.6

Q ss_pred             CcEEEeccCCCCCCCcc--ccccCCCccEEeccCcccCCCChhh----hhCCCCCcEEEcccCCC
Q 041736          267 LNEVILTNNGLHSCLPE--EIGLLKNVTVFDVSYNKLMGELPDT----IAEMTSLQQLNVAHNML  325 (500)
Q Consensus       267 L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~p~~----l~~l~~L~~L~L~~N~l  325 (500)
                      |++|++++|.++. ++.  .+..+++|++|++++|.++ .++..    +..+++|++|++++|.+
T Consensus        90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            5555555555533 232  4445555555555555554 23332    44555555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=3.2e-14  Score=127.01  Aligned_cols=133  Identities=20%  Similarity=0.223  Sum_probs=92.3

Q ss_pred             ccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcE
Q 041736          190 VLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNE  269 (500)
Q Consensus       190 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~  269 (500)
                      +.++.+|++|++++|+++ .++......                      .+|++|++++|.+++.  ..+..+.+ |++
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~----------------------~~L~~L~Ls~N~l~~~--~~l~~l~~-L~~   68 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATL----------------------DQFDAIDFSDNEIRKL--DGFPLLRR-LKT   68 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGT----------------------TCCSEEECCSSCCCEE--CCCCCCSS-CCE
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcC----------------------CCCCEEECCCCCCCcc--cccccCCC-CCE
Confidence            445667777777777766 333211111                      1344455555555432  45666775 888


Q ss_pred             EEeccCCCCCCCccccccCCCccEEeccCcccCCCChh--hhhCCCCCcEEEcccCCCCCCCchh----hcCCCCCcEEE
Q 041736          270 VILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD--TIAEMTSLQQLNVAHNMLSGTVPDS----VCSLPNLRNFS  343 (500)
Q Consensus       270 L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~N~l~g~ip~~----l~~l~~L~~L~  343 (500)
                      |++++|.+++..+..+..+++|++|+|++|+|+ .++.  .+..+++|+.|+|++|.++ .++..    +..+++|++||
T Consensus        69 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld  146 (176)
T 1a9n_A           69 LLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  146 (176)
T ss_dssp             EECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             EECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence            899988888754455588889999999999886 5665  7788888999999999887 45553    77888888888


Q ss_pred             ccCCcCc
Q 041736          344 FDYNFFT  350 (500)
Q Consensus       344 Ls~N~l~  350 (500)
                      +++|.+.
T Consensus       147 ~~~n~~~  153 (176)
T 1a9n_A          147 FQKVKLK  153 (176)
T ss_dssp             TEECCHH
T ss_pred             CCcCCHH
Confidence            8888764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=2.2e-13  Score=120.85  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=87.5

Q ss_pred             cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736          242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA  321 (500)
Q Consensus       242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  321 (500)
                      .+.+++++|+++ .+|..+.  . +|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..+..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~-~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--T-TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--C-CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            456777777776 3565553  3 48899999999998878888899999999999999987666677888999999999


Q ss_pred             cCCCCCCCchhhcCCCCCcEEEccCCcCccCCC
Q 041736          322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP  354 (500)
Q Consensus       322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p  354 (500)
                      +|+|++..+..|..+++|++|+|++|.|++..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999987666678888999999999998876543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=5.1e-13  Score=118.92  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=84.7

Q ss_pred             cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736          242 VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA  321 (500)
Q Consensus       242 L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  321 (500)
                      .+.+++++|++. .+|..+.  . +|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..+.++++|++|+|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--T-DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--T-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--C-CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            356777777775 5666554  3 48888999998888778888888899999999999886555567888899999999


Q ss_pred             cCCCCCCCchhhcCCCCCcEEEccCCcCccCC
Q 041736          322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGES  353 (500)
Q Consensus       322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~  353 (500)
                      +|+|++..+..|..+++|++|+|++|.|....
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99888655556888889999999998887653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=2.8e-13  Score=133.54  Aligned_cols=218  Identities=9%  Similarity=0.060  Sum_probs=157.7

Q ss_pred             CcEEEEECCCCCCc--------------------ccCchhhcC--------CCCCCEEEcCCCCCCccCCccccCCCCCC
Q 041736          122 RTVAGIDLNHGDIA--------------------SYLPEELGL--------LADIALFHVNTNRFCGTLPRSFNKLKLLF  173 (500)
Q Consensus       122 ~~l~~L~L~~n~l~--------------------~~~p~~l~~--------l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  173 (500)
                      .+|+.|||++|.+.                    .+-...|.+        +.+|+.|+|.+ .++..-..+|.++.+|+
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence            56777777777765                    112235667        99999999999 88766667899999999


Q ss_pred             EEeCcCCcCCCcCchhccCCCCCcEEeccCCcC----C----------------------CCCchhhc-----CCCCCeE
Q 041736          174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF----E----------------------GKIPKALF-----DKDLDAV  222 (500)
Q Consensus       174 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l----~----------------------g~~p~~~~-----~~~L~~L  222 (500)
                      +|+|++|.+.......|.++.++..+.+..+..    .                      +.++..++     ..+++.+
T Consensus       128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l  207 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL  207 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred             eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence            999999998867777888887787777665321    1                      01111111     1233333


Q ss_pred             EccCCCccCCCCCcc--CCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCcc-EEeccCc
Q 041736          223 FINNNRFSFELPDNI--GNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVT-VFDVSYN  299 (500)
Q Consensus       223 ~l~~n~l~~~~p~~~--~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~-~L~Ls~n  299 (500)
                      .+.++-.... ...+  ...+|+.|+|.+|+++..-...|.++.+ |++|+|.+| +...-...|.++.+|+ .|++.+ 
T Consensus       208 ~~~~~l~~~~-~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~-L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          208 TIEGKLDNAD-FKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY-LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEECCCHHH-HHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT-CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             EEeeeecHHH-HHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC-CCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence            3332211000 0000  1367999999999998666678999987 999999998 7776678899999999 999998 


Q ss_pred             ccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEc
Q 041736          300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSF  344 (500)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~L  344 (500)
                      +++..-...|.++.+|+.|++++|.++..-...|.++++|+.+..
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            777566688999999999999999999666678999999999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1.4e-12  Score=115.54  Aligned_cols=107  Identities=20%  Similarity=0.247  Sum_probs=85.5

Q ss_pred             CeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCc
Q 041736          220 DAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYN  299 (500)
Q Consensus       220 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  299 (500)
                      +++++++|+++ .+|..+. .++++|+|++|.+++..+..|..+.+ |++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQ-LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTT-CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC-CCCcEEEcCCCcCCccChhhhcCccc-CCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            34455555544 2444332 56788888888888777888888887 999999999999877777899999999999999


Q ss_pred             ccCCCChhhhhCCCCCcEEEcccCCCCCCC
Q 041736          300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTV  329 (500)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~i  329 (500)
                      +|++..+..+..+++|++|+|++|.++...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            999766667899999999999999988653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=3e-12  Score=113.91  Aligned_cols=106  Identities=21%  Similarity=0.253  Sum_probs=83.0

Q ss_pred             CeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCc
Q 041736          220 DAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYN  299 (500)
Q Consensus       220 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  299 (500)
                      +.+++++|+++ .+|..+. .+|++|+|++|.+.+..+..|..+.+ |++|+|++|+|++..+..|..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVN-LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcC-CCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            34455555543 3444443 56778888888888777888888887 999999999999866666789999999999999


Q ss_pred             ccCCCChhhhhCCCCCcEEEcccCCCCCC
Q 041736          300 KLMGELPDTIAEMTSLQQLNVAHNMLSGT  328 (500)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~  328 (500)
                      +|++..+..+..+++|++|+|++|.+...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99966555688999999999999998744

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.35  E-value=2.5e-11  Score=122.64  Aligned_cols=193  Identities=12%  Similarity=0.074  Sum_probs=76.3

Q ss_pred             CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--CCCCeEEc
Q 041736          147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFI  224 (500)
Q Consensus       147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l  224 (500)
                      +|+.+.|.+ .++..-..+|.++.+|+.++|.+|+++..-...|. ..+|+.+.|..+ ++ .+....|.  .+|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence            344444443 33322333444444444444444444422222232 344444444422 22 23332222  34444444


Q ss_pred             cCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC-----CCCccccccCCCccEEeccCc
Q 041736          225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH-----SCLPEEIGLLKNVTVFDVSYN  299 (500)
Q Consensus       225 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~-----~~~p~~~~~l~~L~~L~Ls~n  299 (500)
                      .++ ++..-...+...+|+.+.+. +.+...-...|.++.+ |+.+++.+|.+.     ..-...|.++.+|+.++|.+ 
T Consensus       234 ~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~-L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-  309 (401)
T 4fdw_A          234 PEN-VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPE-LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-  309 (401)
T ss_dssp             CTT-CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTT-CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred             CCC-ccCccccccccCCccEEEeC-CCccEEChhHhhCCCC-CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence            432 22111122222344444442 2233222344444443 555555444433     12223444445555555542 


Q ss_pred             ccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcC
Q 041736          300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFF  349 (500)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l  349 (500)
                      .++..-...|.++.+|+.|+|..| ++..-...|.++ +|+.+++++|.+
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            233222334444455555555332 332222334444 455555554443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=5.9e-14  Score=140.52  Aligned_cols=164  Identities=19%  Similarity=0.222  Sum_probs=90.6

Q ss_pred             CCCCCEEEcCCCCCCccCCccccCC-----CCCCEEeCcCCcCCCcCchhc-cCCCCCcEEeccCCcCCCCCchhhcCCC
Q 041736          145 LADIALFHVNTNRFCGTLPRSFNKL-----KLLFELDLSNNRFAGKFPYVV-LGLPKLKFLDLRYNEFEGKIPKALFDKD  218 (500)
Q Consensus       145 l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~  218 (500)
                      +.+|++|+|++|.|+......|..+     .+|++|+|++|.++......+ ..+.+|++|+|++|.++......+..  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~--  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD--  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH--
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH--
Confidence            3567888888888775433333322     578888888887764322222 23456777777777765322222110  


Q ss_pred             CCeEEccCCCccCCCCCcc--CCCCcceEEecccccccc----CchhhhcccccCcEEEeccCCCCCC----CccccccC
Q 041736          219 LDAVFINNNRFSFELPDNI--GNSPVSVLVLANNKFHGC----LPLSFGNMSRTLNEVILTNNGLHSC----LPEEIGLL  288 (500)
Q Consensus       219 L~~L~l~~n~l~~~~p~~~--~~~~L~~L~l~~n~l~~~----~p~~l~~l~~~L~~L~Ls~n~l~~~----~p~~~~~l  288 (500)
                                       .+  ....|++|+|++|.++..    +...+..... |++|+|++|.|++.    +...+...
T Consensus       149 -----------------~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~~L~~~  210 (372)
T 3un9_A          149 -----------------LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAAQLDRN  210 (372)
T ss_dssp             -----------------HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred             -----------------HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence                             00  012344455555544321    2233344554 77777777776542    23445566


Q ss_pred             CCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCC
Q 041736          289 KNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGT  328 (500)
Q Consensus       289 ~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~  328 (500)
                      ++|++|||++|.|++.    +...+...++|++|+|++|.|++.
T Consensus       211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            6777777777777642    233344556777777777777643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.24  E-value=1.8e-11  Score=121.30  Aligned_cols=104  Identities=18%  Similarity=0.180  Sum_probs=66.1

Q ss_pred             eEEeccc-cccccCchhhhcccccCcEEEecc-CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736          244 VLVLANN-KFHGCLPLSFGNMSRTLNEVILTN-NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA  321 (500)
Q Consensus       244 ~L~l~~n-~l~~~~p~~l~~l~~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  321 (500)
                      .++++++ +++ .+|. |..+.+ |++|+|++ |.|++..+..|.++.+|++|+|++|+|++..+..|.++++|++|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~-L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSC-CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCC-eeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            3455555 555 3555 666665 77777764 67766655666777777777777777776666666777777777777


Q ss_pred             cCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736          322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTG  351 (500)
Q Consensus       322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  351 (500)
                      +|+|++..+..+..+. |++|+|.+|.|..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            7777644444444443 6777777776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=4.7e-13  Score=133.97  Aligned_cols=162  Identities=22%  Similarity=0.182  Sum_probs=110.7

Q ss_pred             CCCCCEEeCcCCcCCCcCchh----cc-CCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcc
Q 041736          169 LKLLFELDLSNNRFAGKFPYV----VL-GLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVS  243 (500)
Q Consensus       169 l~~L~~L~Ls~n~l~~~~p~~----l~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~  243 (500)
                      +..|++|+|++|.++......    +. ...+|++|+|++|.++......+..                     ...+|+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---------------------~L~~L~  129 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---------------------VFLRAR  129 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---------------------HHHTEE
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---------------------HHHhcc
Confidence            456888999988887543332    22 2268888888888876322222111                     002355


Q ss_pred             eEEeccccccccCchhhh-----cccccCcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----Chhhhh
Q 041736          244 VLVLANNKFHGCLPLSFG-----NMSRTLNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIA  310 (500)
Q Consensus       244 ~L~l~~n~l~~~~p~~l~-----~l~~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~  310 (500)
                      .|+|++|.++......+.     ... +|++|+|++|.|++.    +...+..+++|++|||++|.|++.    +...+.
T Consensus       130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~  208 (372)
T 3un9_A          130 KLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD  208 (372)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG
T ss_pred             HhhcCCCCCCHHHHHHHHHHHHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh
Confidence            566666665543333332     234 499999999999752    445557889999999999999853    345667


Q ss_pred             CCCCCcEEEcccCCCCCC----CchhhcCCCCCcEEEccCCcCccC
Q 041736          311 EMTSLQQLNVAHNMLSGT----VPDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       311 ~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      ...+|++|+|++|.|++.    +...+...++|++|||++|.|++.
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            788999999999999853    444566778999999999999753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.23  E-value=1.3e-10  Score=117.40  Aligned_cols=217  Identities=11%  Similarity=0.094  Sum_probs=162.9

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+|+.++|.. .+..+-...|.++.+|+.++|.+|.++..-...|. ..+|+.+.|.++ ++..-...|.++.+|+.++|
T Consensus       157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred             CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence            3578888876 66666667899999999999999999855555565 689999999855 77566778999999999999


Q ss_pred             cCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCcc-CCCCcceEEecccccc-----ccCchhhhcccccCcEEEecc
Q 041736          202 RYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNI-GNSPVSVLVLANNKFH-----GCLPLSFGNMSRTLNEVILTN  274 (500)
Q Consensus       202 s~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~-~~~~L~~L~l~~n~l~-----~~~p~~l~~l~~~L~~L~Ls~  274 (500)
                      ..| ++ .+....|. .+|+.+.+. +.++..-...+ +..+|+.+++.+|.+.     ..-...|..+.+ |+.++|. 
T Consensus       234 ~~~-l~-~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~-L~~l~l~-  308 (401)
T 4fdw_A          234 PEN-VS-TIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK-LARFEIP-  308 (401)
T ss_dssp             CTT-CC-EECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT-CCEECCC-
T ss_pred             CCC-cc-CccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc-CCeEEeC-
Confidence            875 44 45544444 789999994 44442223333 3468999999988765     344567888887 9999999 


Q ss_pred             CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC-CCcEEEccCCc
Q 041736          275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP-NLRNFSFDYNF  348 (500)
Q Consensus       275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~-~L~~L~Ls~N~  348 (500)
                      +++...-...|.++.+|+.|+|..| ++..-...|.++ +|+.|++++|.+.......|..++ +++.|.+-.|.
T Consensus       309 ~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          309 ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            4577666678999999999999665 664556678888 999999999988755555566663 56677666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.22  E-value=3.4e-11  Score=119.36  Aligned_cols=101  Identities=16%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             ECCCC-CCcccCchhhcCCCCCCEEEcCC-CCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736          128 DLNHG-DIASYLPEELGLLADIALFHVNT-NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE  205 (500)
Q Consensus       128 ~L~~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  205 (500)
                      +++++ ++++ +|. |..+++|++|+|++ |.|++..+..|.+|.+|++|+|++|+|++..+..|.+|++|++|+|++|+
T Consensus        14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            44455 5654 677 88888888888885 88887777788888888888888888888888888888888888888888


Q ss_pred             CCCCCchhhcC-CCCCeEEccCCCccC
Q 041736          206 FEGKIPKALFD-KDLDAVFINNNRFSF  231 (500)
Q Consensus       206 l~g~~p~~~~~-~~L~~L~l~~n~l~~  231 (500)
                      |++ ++...+. ..|++|+|.+|.+..
T Consensus        92 l~~-~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LES-LSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSC-CCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cce-eCHHHcccCCceEEEeeCCCccC
Confidence            884 4443333 447777777777653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=7.1e-10  Score=110.09  Aligned_cols=203  Identities=15%  Similarity=0.192  Sum_probs=107.1

Q ss_pred             CcEEEEECCCCCCcc-c-------CchhhcCCCCCCEEEcCCCCCC---------ccCCccccCCCCCCEEeCcCCcCCC
Q 041736          122 RTVAGIDLNHGDIAS-Y-------LPEELGLLADIALFHVNTNRFC---------GTLPRSFNKLKLLFELDLSNNRFAG  184 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~-~-------~p~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~Ls~n~l~~  184 (500)
                      .+|+.|.+......+ .       +...+..+++|+.|.|.++...         +.+...+..+++|+.|+|++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            445566666544332 1       1223445678888888665331         123344566677777777776311 


Q ss_pred             cCchhccCCCCCcEEeccCCcCCCCCchhhc---CCCCCeEEccC--CCccCCCCCccCCCCcceEEeccccccccCchh
Q 041736          185 KFPYVVLGLPKLKFLDLRYNEFEGKIPKALF---DKDLDAVFINN--NRFSFELPDNIGNSPVSVLVLANNKFHGCLPLS  259 (500)
Q Consensus       185 ~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~---~~~L~~L~l~~--n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~  259 (500)
                      .++. + .+.+|++|+|..+.+....-..+.   .++|++|+|+.  |...+..                 .+. .+...
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~-----------------~~~-~l~~~  245 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG-----------------DMN-VFRPL  245 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS-----------------CGG-GTGGG
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch-----------------hHH-HHHHH
Confidence            2222 2 266777777777766532222222   25666666532  1111100                 000 00011


Q ss_pred             h--hcccccCcEEEeccCCCCCCCccccc---cCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCCCc
Q 041736          260 F--GNMSRTLNEVILTNNGLHSCLPEEIG---LLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGTVP  330 (500)
Q Consensus       260 l--~~l~~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~ip  330 (500)
                      +  ..+++ |++|+|++|.+.+.....+.   .+++|++|||+.|.|++.    +...+..+++|+.|+|++|.|++..-
T Consensus       246 l~~~~~p~-Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~  324 (362)
T 2ra8_A          246 FSKDRFPN-LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK  324 (362)
T ss_dssp             SCTTTCTT-CCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred             HhcCCCCC-cCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence            1  12344 77777777777643322222   467788888888887753    23333456788888888887765433


Q ss_pred             hhhcC-CCCCcEEEccCCc
Q 041736          331 DSVCS-LPNLRNFSFDYNF  348 (500)
Q Consensus       331 ~~l~~-l~~L~~L~Ls~N~  348 (500)
                      ..+.. +  ...++++.|.
T Consensus       325 ~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          325 KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHc--CCEEEecCCc
Confidence            33332 2  3567787776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=2.9e-09  Score=105.70  Aligned_cols=197  Identities=12%  Similarity=0.153  Sum_probs=118.1

Q ss_pred             CCCCEEEcCCCCCCc-cC-------CccccCCCCCCEEeCcCCcCC---------CcCchhccCCCCCcEEeccCCcCCC
Q 041736          146 ADIALFHVNTNRFCG-TL-------PRSFNKLKLLFELDLSNNRFA---------GKFPYVVLGLPKLKFLDLRYNEFEG  208 (500)
Q Consensus       146 ~~L~~L~L~~n~l~~-~~-------p~~l~~l~~L~~L~Ls~n~l~---------~~~p~~l~~l~~L~~L~Ls~N~l~g  208 (500)
                      ..++.|.+....+.| ..       ..++..+++|+.|.|..+...         +.+...+..+++|+.|+|++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            467788888666542 21       233456788888888665331         123344555667777777665210 


Q ss_pred             CCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhh--cccccCcEEEecc--CCCCCC----
Q 041736          209 KIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFG--NMSRTLNEVILTN--NGLHSC----  280 (500)
Q Consensus       209 ~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~--~l~~~L~~L~Ls~--n~l~~~----  280 (500)
                      .+                       +. +...+|+.|+|..+.+.......+.  .+++ |++|+|+.  |...+.    
T Consensus       186 ~l-----------------------~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~-L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          186 SI-----------------------GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPN-LEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             BC-----------------------CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTT-CCEEEEECBCGGGTCCSCGG
T ss_pred             ee-----------------------cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCC-CcEEEEeccccccccchhHH
Confidence            11                       11 2234566677666665543333443  4565 88888853  221111    


Q ss_pred             -Ccccc--ccCCCccEEeccCcccCCCChhhhh---CCCCCcEEEcccCCCCCC----CchhhcCCCCCcEEEccCCcCc
Q 041736          281 -LPEEI--GLLKNVTVFDVSYNKLMGELPDTIA---EMTSLQQLNVAHNMLSGT----VPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       281 -~p~~~--~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                       +...+  ..+++|++|+|++|.+.+.....+.   .+++|++|+|+.|.+.+.    +...+..+++|+.|+|++|.++
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence             11122  3578999999999998754444443   578899999999998863    3444456789999999999887


Q ss_pred             cCCCCCc-c-C-CEEEcCCCC
Q 041736          351 GESPVCL-D-L-QGFDDKRNC  368 (500)
Q Consensus       351 g~~p~~~-~-L-~~l~l~~N~  368 (500)
                      ...-... . + ..++++.+.
T Consensus       321 d~~~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          321 DEMKKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHHHHCCSEEECCSBC
T ss_pred             HHHHHHHHHHcCCEEEecCCc
Confidence            5421111 1 2 456777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=3.7e-08  Score=88.12  Aligned_cols=87  Identities=16%  Similarity=0.158  Sum_probs=58.3

Q ss_pred             CcEEEEECCCC-CCccc----CchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCc----Cch
Q 041736          122 RTVAGIDLNHG-DIASY----LPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGK----FPY  188 (500)
Q Consensus       122 ~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~  188 (500)
                      .+|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+....+|++|+|++|.|+..    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            56778888887 77532    334556677788888888877632    334455567788888888877743    345


Q ss_pred             hccCCCCCcEEec--cCCcCCC
Q 041736          189 VVLGLPKLKFLDL--RYNEFEG  208 (500)
Q Consensus       189 ~l~~l~~L~~L~L--s~N~l~g  208 (500)
                      .+...++|++|+|  ++|.+..
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHhCCCceEEEecCCCCCCCH
Confidence            5666677778887  6677763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.49  E-value=2.6e-08  Score=89.20  Aligned_cols=84  Identities=15%  Similarity=0.260  Sum_probs=45.2

Q ss_pred             CcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEc--ccCCCCCC----Cchh
Q 041736          267 LNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNV--AHNMLSGT----VPDS  332 (500)
Q Consensus       267 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--~~N~l~g~----ip~~  332 (500)
                      |++|+|++|.+.+.    +...+...++|++|+|++|.|++.    +...+....+|++|+|  ++|.|...    +...
T Consensus        67 L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~  146 (185)
T 1io0_A           67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM  146 (185)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred             cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH
Confidence            66666666665532    223344445666666666666532    2334455556666666  55666532    2333


Q ss_pred             hcCCCCCcEEEccCCcCc
Q 041736          333 VCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       333 l~~l~~L~~L~Ls~N~l~  350 (500)
                      +...++|++|+|++|.+.
T Consensus       147 L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          147 LEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEeccCCCCC
Confidence            444556666666666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.45  E-value=2.3e-06  Score=85.94  Aligned_cols=214  Identities=13%  Similarity=0.079  Sum_probs=106.5

Q ss_pred             hhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhh-cCCCC
Q 041736          141 ELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKAL-FDKDL  219 (500)
Q Consensus       141 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~-~~~~L  219 (500)
                      +|.++.+|+.+.+.++..+ .-...|.++.+|+.+++..+ ++......|.++..|+.+.+..+...  +.... ...+|
T Consensus       157 aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l  232 (394)
T 4fs7_A          157 AFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGV  232 (394)
T ss_dssp             TTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCC
T ss_pred             hhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCC
Confidence            4555666666666544322 33345556666666666554 33233345555566665555444321  11111 12455


Q ss_pred             CeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCc
Q 041736          220 DAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYN  299 (500)
Q Consensus       220 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n  299 (500)
                      +.+.+..+...-.--.+.+...++.+.+..+... .....|..... ++.+.+..+.+..   ..+..+.+|+.+.+..+
T Consensus       233 ~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~-l~~~~~~~~~i~~---~~F~~~~~L~~i~l~~~  307 (394)
T 4fs7_A          233 KNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSG-LKKVIYGSVIVPE---KTFYGCSSLTEVKLLDS  307 (394)
T ss_dssp             CEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTT-CCEEEECSSEECT---TTTTTCTTCCEEEECTT
T ss_pred             ceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccc-cceeccCceeecc---ccccccccccccccccc
Confidence            5555543221100011122244566665544322 22334444444 6666555544322   34566677777777554


Q ss_pred             ccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC----CCCCccCCEEEcCC
Q 041736          300 KLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE----SPVCLDLQGFDDKR  366 (500)
Q Consensus       300 ~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~----~p~~~~L~~l~l~~  366 (500)
                       ++..-...|.++.+|+.++|.++ ++..-...|.++.+|+.+++..| ++..    .-.|.+|+.+++..
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence             44233445667777777777543 44222456777777777777655 3322    22344566666643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.44  E-value=3.4e-06  Score=84.75  Aligned_cols=104  Identities=12%  Similarity=0.171  Sum_probs=52.0

Q ss_pred             hhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCC
Q 041736          259 SFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN  338 (500)
Q Consensus       259 ~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~  338 (500)
                      .|..... |+.+.+.++... .-...|.++.+|+.+++.. .++..-...|.++.+|+.++|..+ ++..-...|.++.+
T Consensus       260 aF~~c~~-L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          260 AFDSCAY-LASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTCSS-CCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             eeeeccc-ccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            3444454 666666543321 1234455666666666642 333233345556666666666543 33222345666666


Q ss_pred             CcEEEccCCcCc----cCCCCCccCCEEEcCCC
Q 041736          339 LRNFSFDYNFFT----GESPVCLDLQGFDDKRN  367 (500)
Q Consensus       339 L~~L~Ls~N~l~----g~~p~~~~L~~l~l~~N  367 (500)
                      |+.+.+..+ ++    +..-.|.+|+.+++.++
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            666666443 22    11223445666666544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.43  E-value=2.4e-06  Score=85.88  Aligned_cols=217  Identities=15%  Similarity=0.134  Sum_probs=147.5

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCc
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK  197 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  197 (500)
                      +....+|+.+++.++ +...-...|.++.+|+.+++..+ ++..-...|.++..|+.+.+..+...  +........+|+
T Consensus       158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~  233 (394)
T 4fs7_A          158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVK  233 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCC
T ss_pred             hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCc
Confidence            445577889998765 34444567889999999999877 54445567888999999988776543  233344557888


Q ss_pred             EEeccCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccC
Q 041736          198 FLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN  275 (500)
Q Consensus       198 ~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n  275 (500)
                      .+.+..+. + .+....+.  ..|+.+.+..+...-....+.....++.+.+..+.+.   ...|....+ |+.+.+.++
T Consensus       234 ~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~-L~~i~l~~~  307 (394)
T 4fs7_A          234 NIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSS-LTEVKLLDS  307 (394)
T ss_dssp             EEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTT-CCEEEECTT
T ss_pred             eEEECCCc-e-ecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec---ccccccccc-ccccccccc
Confidence            88876442 2 23333332  6788888876654422222233356777766655433   245666775 999998754


Q ss_pred             CCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCC
Q 041736          276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYN  347 (500)
Q Consensus       276 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N  347 (500)
                       +...-..+|.++.+|+.++|..+ ++..-...|.++.+|+.+++..| ++..-...|.++.+|+.+++..+
T Consensus       308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence             55444567889999999999754 55344567888999999999876 65344567889999999998765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=1e-07  Score=89.98  Aligned_cols=80  Identities=24%  Similarity=0.316  Sum_probs=58.2

Q ss_pred             hcccccCcEEEeccCCCCC--CCccccccCCCccEEeccCcccCCCChhhhhCCC--CCcEEEcccCCCCCCCch-----
Q 041736          261 GNMSRTLNEVILTNNGLHS--CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMT--SLQQLNVAHNMLSGTVPD-----  331 (500)
Q Consensus       261 ~~l~~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L~L~~N~l~g~ip~-----  331 (500)
                      .++.. |++|+|++|+|++  .++..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+.+.++.     
T Consensus       167 ~~l~~-L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTT-CCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCC-CCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            44565 8888888888887  3456667888888888888888854  3344444  888888888888876552     


Q ss_pred             --hhcCCCCCcEEE
Q 041736          332 --SVCSLPNLRNFS  343 (500)
Q Consensus       332 --~l~~l~~L~~L~  343 (500)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              356778888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=6.5e-07  Score=84.42  Aligned_cols=95  Identities=19%  Similarity=0.106  Sum_probs=65.4

Q ss_pred             EECCCCCC---cccCchhhcCCCCCCEEEcCCCCCCc--cCCccccCCCCCCEEeCcCCcCCCcCchhccCCC--CCcEE
Q 041736          127 IDLNHGDI---ASYLPEELGLLADIALFHVNTNRFCG--TLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLP--KLKFL  199 (500)
Q Consensus       127 L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~--~L~~L  199 (500)
                      ++++.|..   .+.+.....++++|++|+|++|.|++  .++..+..+++|++|+|++|+|++.  ..+..+.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            56666632   22222233568889999999999987  4556777889999999999999864  2333333  89999


Q ss_pred             eccCCcCCCCCchh------hc--CCCCCeEE
Q 041736          200 DLRYNEFEGKIPKA------LF--DKDLDAVF  223 (500)
Q Consensus       200 ~Ls~N~l~g~~p~~------~~--~~~L~~L~  223 (500)
                      +|++|.+.+.++..      +.  .++|+.|+
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999988766531      11  16777765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.24  E-value=2.8e-05  Score=77.93  Aligned_cols=77  Identities=5%  Similarity=0.031  Sum_probs=40.2

Q ss_pred             EEEEECCCCCCcccCchhhcCCCCCCEEEcCCCC---CCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          124 VAGIDLNHGDIASYLPEELGLLADIALFHVNTNR---FCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       124 l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      |+.+.+..+ ++.+-..+|.++.+|+.+.+..|.   ++..-..+|.++.+|+.+.+..+ ++......|..+.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            566666543 444444567777777777776543   33222344555555655555433 2223333445555555555


Q ss_pred             cc
Q 041736          201 LR  202 (500)
Q Consensus       201 Ls  202 (500)
                      +.
T Consensus       144 lp  145 (394)
T 4gt6_A          144 IP  145 (394)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.00  E-value=0.00034  Score=69.43  Aligned_cols=87  Identities=10%  Similarity=0.072  Sum_probs=50.9

Q ss_pred             hhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCC
Q 041736          258 LSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLP  337 (500)
Q Consensus       258 ~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~  337 (500)
                      ..|..... |+.+.+..+ ++..-...+.++.+|+.+++..+ ++..-...+.++.+|+.+.+.++.++..-...|.++.
T Consensus       234 ~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~  310 (379)
T 4h09_A          234 GAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCV  310 (379)
T ss_dssp             TTTTTCSS-CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCT
T ss_pred             ccccCCcc-ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCC
Confidence            34445554 666666544 33333345666667777776543 3323334566677777777777666633345667777


Q ss_pred             CCcEEEccCC
Q 041736          338 NLRNFSFDYN  347 (500)
Q Consensus       338 ~L~~L~Ls~N  347 (500)
                      +|+.++|..+
T Consensus       311 ~L~~i~lp~~  320 (379)
T 4h09_A          311 KLSSVTLPTA  320 (379)
T ss_dssp             TCCEEECCTT
T ss_pred             CCCEEEcCcc
Confidence            7777777543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.93  E-value=3.5e-06  Score=73.82  Aligned_cols=84  Identities=15%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCC-CCCccCCccccCC----CCCCEEeCcCCc-CCCcCchhccCCCC
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTN-RFCGTLPRSFNKL----KLLFELDLSNNR-FAGKFPYVVLGLPK  195 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~p~~l~~l~~  195 (500)
                      -+|+.|||+++.++..--..+..+++|++|+|+++ .|++.--..++.+    .+|++|+|++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            46999999999987665566789999999999998 4775544556665    369999999985 87654456778999


Q ss_pred             CcEEeccCCc
Q 041736          196 LKFLDLRYNE  205 (500)
Q Consensus       196 L~~L~Ls~N~  205 (500)
                      |++|+|+++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999985

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.80  E-value=8.4e-06  Score=71.42  Aligned_cols=81  Identities=9%  Similarity=0.081  Sum_probs=37.9

Q ss_pred             CcEEEeccCCCCCCCccccccCCCccEEeccCcc-cCCCChhhhhCC----CCCcEEEcccCC-CCCCCchhhcCCCCCc
Q 041736          267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNK-LMGELPDTIAEM----TSLQQLNVAHNM-LSGTVPDSVCSLPNLR  340 (500)
Q Consensus       267 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~N~-l~g~ip~~l~~l~~L~  340 (500)
                      |++||+++|.+++.--..+..+++|++|+|++|. |++.--..+..+    ++|++|+|++|. +++.--..+..+++|+
T Consensus        63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~  142 (176)
T 3e4g_A           63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLK  142 (176)
T ss_dssp             EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCC
T ss_pred             EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCC
Confidence            5555555555544333344455555555555552 443222333332    245555555542 4432223344555555


Q ss_pred             EEEccCC
Q 041736          341 NFSFDYN  347 (500)
Q Consensus       341 ~L~Ls~N  347 (500)
                      +|+++++
T Consensus       143 ~L~L~~c  149 (176)
T 3e4g_A          143 YLFLSDL  149 (176)
T ss_dssp             EEEEESC
T ss_pred             EEECCCC
Confidence            5555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=2.1e-05  Score=70.21  Aligned_cols=82  Identities=17%  Similarity=0.208  Sum_probs=38.7

Q ss_pred             CcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccC---CCCC----CCch
Q 041736          267 LNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHN---MLSG----TVPD  331 (500)
Q Consensus       267 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N---~l~g----~ip~  331 (500)
                      |++|+|++|.|.+.    +.+.+..-+.|++|+|++|.|++.    +-+.+.....|++|+|++|   .+..    .+.+
T Consensus        72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~  151 (197)
T 1pgv_A           72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM  151 (197)
T ss_dssp             CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred             cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence            55566665555532    223333445566666666655531    2223334455666666543   2221    1233


Q ss_pred             hhcCCCCCcEEEccCCc
Q 041736          332 SVCSLPNLRNFSFDYNF  348 (500)
Q Consensus       332 ~l~~l~~L~~L~Ls~N~  348 (500)
                      .+...+.|+.|+++.|.
T Consensus       152 aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          152 AIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHCSSCCEEECCCCC
T ss_pred             HHHhCCCcCeEeccCCC
Confidence            34444555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.64  E-value=2.6e-05  Score=69.59  Aligned_cols=83  Identities=12%  Similarity=0.093  Sum_probs=54.6

Q ss_pred             CcEEEEECCCC-CCccc----CchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCc----Cch
Q 041736          122 RTVAGIDLNHG-DIASY----LPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGK----FPY  188 (500)
Q Consensus       122 ~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~  188 (500)
                      ..|+.|+|++| .|...    +-+.+..-+.|++|+|++|.|...    +.+.+..-+.|++|+|++|.|...    +..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            45777888875 66432    345566677888888888888632    334444567788888888887743    334


Q ss_pred             hccCCCCCcEEeccCC
Q 041736          189 VVLGLPKLKFLDLRYN  204 (500)
Q Consensus       189 ~l~~l~~L~~L~Ls~N  204 (500)
                      .+..-+.|++|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            5555667888887755

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.56  E-value=0.0019  Score=64.00  Aligned_cols=105  Identities=10%  Similarity=0.066  Sum_probs=76.9

Q ss_pred             CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEE
Q 041736          239 NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQL  318 (500)
Q Consensus       239 ~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  318 (500)
                      ...|+.+.+..+ ++..-...|.+... |+.+.+..+ +...-...|.++.+|+.+++.++.++..-...|.++.+|+.+
T Consensus       239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~-l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i  315 (379)
T 4h09_A          239 MKALDEIAIPKN-VTSIGSFLLQNCTA-LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV  315 (379)
T ss_dssp             CSSCCEEEECTT-CCEECTTTTTTCTT-CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred             CccceEEEcCCC-ccEeCccccceeeh-hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence            356788887654 44334456777776 999998654 544444678899999999999988875556678899999999


Q ss_pred             EcccCCCCCCCchhhcCCCCCcEEEccCC
Q 041736          319 NVAHNMLSGTVPDSVCSLPNLRNFSFDYN  347 (500)
Q Consensus       319 ~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N  347 (500)
                      .|..+ ++..-...|.++.+|+.+.+..+
T Consensus       316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          316 TLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             EcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            99755 55333457889999998887654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.48  E-value=0.0049  Score=51.04  Aligned_cols=55  Identities=18%  Similarity=0.259  Sum_probs=28.1

Q ss_pred             EEECCCCCCc-ccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcC
Q 041736          126 GIDLNHGDIA-SYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRF  182 (500)
Q Consensus       126 ~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  182 (500)
                      .++.++++++ ..+|..+  -.+|++|+|++|+|+..-...|..+.+|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666665 2344322  12455555555555544344455555555555555544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.29  E-value=0.0054  Score=50.78  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=29.5

Q ss_pred             EEEeccCCCC-CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736          269 EVILTNNGLH-SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS  326 (500)
Q Consensus       269 ~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  326 (500)
                      .++.++++++ ..+|..+  -.+|++|+|++|+|+..-+..|..+.+|++|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666665 1244322  124666666666666433344555555666666655543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	500
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 66.7 bits (161), Expect = 1e-12
 Identities = 63/292 (21%), Positives = 115/292 (39%), Gaps = 15/292 (5%)

Query: 80  ALQAWKKAIISDPWNLTSNWVGCYVCNYT--GVFCAQALDNHSIRTVAGIDLNHGDIASY 137
           AL   KK +  +P  L+S       CN T  GV C     +     V  +DL+  ++   
Sbjct: 10  ALLQIKKDL-GNPTTLSSWLPTTDCCNRTWLGVLCD---TDTQTYRVNNLDLSGLNLPKP 65

Query: 138 --LPEELGLLADIALFHV-NTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLP 194
             +P  L  L  +   ++   N   G +P +  KL  L  L +++   +G  P  +  + 
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 195 KLKFLDLRYNEFEGKIPKALFDKDLDAVF-INNNRFSFELPDNIGNSPVSV--LVLANNK 251
            L  LD  YN   G +P ++           + NR S  +PD+ G+       + ++ N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 252 FHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAE 311
             G +P +F N++      +  +  +       +      T         +      +  
Sbjct: 186 LTGKIPPTFANLN---LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242

Query: 312 MTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFD 363
             +L  L++ +N + GT+P  +  L  L + +  +N   GE P   +LQ FD
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 58/349 (16%), Positives = 117/349 (33%), Gaps = 21/349 (6%)

Query: 14  ILTLITLVTAEKLSVSNNGVF-LEAEAAFIKQRQLLYYRNRYGGRGEFGRIPPSFKFENS 72
            ++   L     L     G+  ++         Q+ +  N+         +        +
Sbjct: 37  TVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN 96

Query: 73  RIRSAYIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDN-----HSIRTVAGI 127
             + A I   A    +               + N T +   +   N      ++  +  +
Sbjct: 97  NNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 156

Query: 128 DLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP 187
                       + L  L  +    +++N+          KL  L  L  +NN+ +   P
Sbjct: 157 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 214

Query: 188 YVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVL 247
             +L    L  L L  N+ +  I       +L  + + NN+ S  L    G + ++ L L
Sbjct: 215 LGIL--TNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKL 270

Query: 248 ANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPD 307
             N+     P     ++   N  +  N             LKN+T   + +N +    P 
Sbjct: 271 GANQISNISP--LAGLTALTNLELNENQLEDISPISN---LKNLTYLTLYFNNISDISP- 324

Query: 308 TIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC 356
            ++ +T LQ+L  A+N +S     S+ +L N+   S  +N  +  +P+ 
Sbjct: 325 -VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 370

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 4e-12
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 15/192 (7%)

Query: 156 NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF 215
           N+     P        L EL L+ N+        +  L  L  LDL  N+     P +  
Sbjct: 207 NQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGL 262

Query: 216 DKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN 275
            K L  + +  N+    +    G + ++ L L  N+     P+S       L    L  N
Sbjct: 263 TK-LTELKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT---LYFN 317

Query: 276 GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS 335
            +    P  +  L  +     + NK+      ++A +T++  L+  HN +S   P  + +
Sbjct: 318 NISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 371

Query: 336 LPNLRNFSFDYN 347
           L  +     +  
Sbjct: 372 LTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.7 bits (156), Expect = 4e-12
 Identities = 48/293 (16%), Positives = 96/293 (32%), Gaps = 22/293 (7%)

Query: 105 CNYTGVFCAQALDNHSI-----RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFC 159
           C+   V C   L    +        A +DL +  I      +   L ++    +  N+  
Sbjct: 10  CHLRVVQC-SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 160 GTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDL 219
              P +F  L  L  L LS N+       +   L +L+  +    +    +   L    +
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 220 DAVFINNNRFSFELPDNIGNSP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH 278
             +  N  + S            +S + +A+             +  +L E+ L  N + 
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ----GLPPSLTELHLDGNKIT 184

Query: 279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPN 338
                 +  L N+    +S+N +      ++A    L++L++ +N L   VP  +     
Sbjct: 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 243

Query: 339 LRNFSFDYNFFT----------GESPVCLDLQGFDDKRNCLRDKPRQRSTLQC 381
           ++      N  +          G +       G     N ++    Q ST +C
Sbjct: 244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 3/142 (2%)

Query: 267 LNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS 326
           L  V  ++ GL   +P+++    +  + D+  NK+          + +L  L + +N +S
Sbjct: 12  LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 327 GTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLS 386
              P +   L  L       N                        K R+         + 
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 387 RLVYCNTLKCQSSPQPPVYSLP 408
             +  N LK           + 
Sbjct: 129 VELGTNPLKSSGIENGAFQGMK 150

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 2/142 (1%)

Query: 262 NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321
           ++      + L NN +      +   LKN+    +  NK+    P   A +  L++L ++
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKPRQRSTLQC 381
            N L         +L  LR    +           L+     +            +    
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 382 RMFLSRLVYCNTLKCQSSPQPP 403
              + +L Y        +  P 
Sbjct: 148 G--MKKLSYIRIADTNITTIPQ 167

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 6e-07
 Identities = 37/240 (15%), Positives = 76/240 (31%), Gaps = 11/240 (4%)

Query: 170 KLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRF 229
           K    L LS N         ++   +L  L+L   E             L  + +++N+ 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTL-PVLGTLDLSHNQL 89

Query: 230 SFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLK 289
                       ++VL ++ N+       +   +       +  N       P  +    
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTP 148

Query: 290 NVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFF 349
            +    ++ N L       +  + +L  L +  N L  T+P        L       N +
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

Query: 350 TGESPVCLDLQGFDDKRNCLRDKPRQRSTLQCRMFLSRL-VYCNTLKCQSSPQPPVYSLP 408
                 C ++  F   R  L+D        +  + +  +     +++C +S + PVY  P
Sbjct: 208 LCN---C-EILYF---RRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYP 260

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 13/57 (22%), Positives = 16/57 (28%), Gaps = 1/57 (1%)

Query: 150 LFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEF 206
              +  N          N L+ L  L L  N      P    G   L F  L  N +
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 7/155 (4%)

Query: 151 FHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKI 210
            ++  N        +F  L  L  L L  NR +        GL  L  L L  N      
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193

Query: 211 PKALFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLN 268
           P A  D  + +      NN  +           +  L L +N +          +   L 
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR--PLWAWLQ 251

Query: 269 EVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303
           +   +++ +   LP+    L    +  ++ N L G
Sbjct: 252 KFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 27/179 (15%), Positives = 48/179 (26%), Gaps = 2/179 (1%)

Query: 174 ELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRF--SF 231
            + L  NR +            L  L L  N        A     L      ++      
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 232 ELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNV 291
             P           +  +      L          L  + L +N L +   +    L N+
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 292 TVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT 350
           T   +  N++          + SL +L +  N ++   P +   L  L       N  +
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 4e-05
 Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 3/169 (1%)

Query: 192 GLPK-LKFLDLRYNEFEGKIPKAL--FDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLA 248
           G+P   + + L  N        +             +N     +     G + +  L L+
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 249 NNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDT 308
           +N     +  +  +    L+ + L   GL    P     L  +    +  N L     DT
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 309 IAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL 357
             ++ +L  L +  N +S     +   L +L       N      P   
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 27/178 (15%), Positives = 50/178 (28%), Gaps = 2/178 (1%)

Query: 78  YIALQAWKKAIISDPWNLTSNWVGCYVCNYTGVFCAQALDNHSIRTVAGIDLNHGDIASY 137
            + L       +          +         +          +  +  + L+   I+S 
Sbjct: 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168

Query: 138 LPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLK 197
                  L  +    ++ NR     P +F  L  L  L L  N  +      +  L  L+
Sbjct: 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 198 FLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGC 255
           +L L  N +            L     +++     LP  +      +  LA N   GC
Sbjct: 229 YLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG--RDLKRLAANDLQGC 284

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 262 NMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA 321
           ++  +L E+ ++NN L   LP        +     S+N L  E+P+      +L+QL+V 
Sbjct: 281 DLPPSLEELNVSNNKLIE-LPALPP---RLERLIASFNHL-AEVPE---LPQNLKQLHVE 332

Query: 322 HNMLSGTVPDSVCSLPNLR 340
           +N L    PD   S+ +LR
Sbjct: 333 YNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.004
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 244 VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG 303
            L ++NNK    LP         L  +I + N L   +PE   L +N+    V YN L  
Sbjct: 288 ELNVSNNKLI-ELPALPPR----LERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR- 337

Query: 304 ELPDTIAEMTSLQ 316
           E PD    +  L+
Sbjct: 338 EFPDIPESVEDLR 350

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 32/230 (13%), Positives = 67/230 (29%), Gaps = 11/230 (4%)

Query: 122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNR 181
           + V         +   L E         +   N+     TL    ++   L  L L   R
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 182 FAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSP 241
            +      +     L  L+L       +            +   N  + F+  +      
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 242 VS----------VLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNV 291
           V+          +     N     L          ++  +  +  L +   +E   L  +
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 292 TVFDVSY-NKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLR 340
               +S    ++ E    + E+ +L+ L V   +  GT+     +LP+L+
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 14/82 (17%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 166 FNKLKLLFELDLSNNRF----AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD----- 216
                +L  L L++              +L    L+ LDL  N         L +     
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 217 -KDLDAVFINNNRFSFELPDNI 237
              L+ + + +  +S E+ D +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 7e-04
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 267 LNEVILTNNGL-HSCLPEEIGLLKNVTVFDVSYNKL----MGELPDTIAEMTSLQQLNVA 321
           +  + +    L  +   E + LL+   V  +    L      ++   +    +L +LN+ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 322 HNMLSGTVPDSVCSL 336
            N L       V   
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 4/59 (6%)

Query: 162 LPRSFNKLKLLFELDLSNNRF----AGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD 216
                  L+    + L +              +   P L  L+LR NE        +  
Sbjct: 19  WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 155 TNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLG-----LPKLKFLDLRYNEFEGK 209
           ++  C +L  +      L ELDLSNN         ++         L+ L L    +  +
Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441

Query: 210 IPKAL 214
           +   L
Sbjct: 442 MEDRL 446

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 4/116 (3%)

Query: 175 LDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELP 234
           L L++          +  L  +  LDL +N      P AL       V   ++     + 
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 235 DNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKN 290
                  +  L+L NN+      +        L  + L  N L          L  
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAE 114

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 11/81 (13%)

Query: 298 YNKLMGELPDTIAEM------TSLQQLNVAHNMLSGTVPDSVCS-----LPNLRNFSFDY 346
              L       + +         LQ L + +N +      ++ +     +P+L     + 
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 347 NFFTGESPVCLDLQGFDDKRN 367
           N F+ E  V  +++     R 
Sbjct: 312 NRFSEEDDVVDEIREVFSTRG 332

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	500
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.48
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.92
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.01

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=6.4e-39  Score=313.51  Aligned_cols=288  Identities=25%  Similarity=0.398  Sum_probs=253.7

Q ss_pred             hhHHHHHHHHHHHHhccCCCCCCCCCCC-CCCCCC--cCceecCCCCCCCCcCcEEEEECCCCCCcc--cCchhhcCCCC
Q 041736           73 RIRSAYIALQAWKKAIISDPWNLTSNWV-GCYVCN--YTGVFCAQALDNHSIRTVAGIDLNHGDIAS--YLPEELGLLAD  147 (500)
Q Consensus        73 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~-~~~~c~--~~gv~c~~~~~~~~~~~l~~L~L~~n~l~~--~~p~~l~~l~~  147 (500)
                      |..++++||++||+.+. |+ ..+++|. +.|||.  |+||+|+..   ....+|+.|||+++++.|  .+|.+|++|++
T Consensus         3 c~~~e~~aLl~~k~~~~-~~-~~l~sW~~~~d~C~~~w~gv~C~~~---~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~   77 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLG-NP-TTLSSWLPTTDCCNRTWLGVLCDTD---TQTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             SCHHHHHHHHHHHHHTT-CC-GGGTTCCTTSCTTTTCSTTEEECCS---SSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCHHHHHHHHHHHHHCC-CC-CcCCCCCCCCCCCCCcCCCeEEeCC---CCcEEEEEEECCCCCCCCCCCCChHHhcCcc
Confidence            45677888888888764 33 3467785 679995  999999752   334689999999999988  47899999999


Q ss_pred             CCEEEcCC-CCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC-CCCCeEEcc
Q 041736          148 IALFHVNT-NRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD-KDLDAVFIN  225 (500)
Q Consensus       148 L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~-~~L~~L~l~  225 (500)
                      |++|+|++ |.++|.+|.+|++|++|++|+|++|++.+..+..+..+.+|+++++++|.+.+.+|..+.. ..|++++++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecc
Confidence            99999997 8999999999999999999999999999999999999999999999999999999888776 899999999


Q ss_pred             CCCccCCCCCccCC-CC-cceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCC
Q 041736          226 NNRFSFELPDNIGN-SP-VSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMG  303 (500)
Q Consensus       226 ~n~l~~~~p~~~~~-~~-L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~  303 (500)
                      +|.+.+.+|..+.. .. ++.+++++|++++..+..+..+.  +.+++++++.+.+.++..+..+++|+.|++++|.+++
T Consensus       158 ~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~--~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence            99999999987765 33 58899999999999999998875  5689999999999999999999999999999999998


Q ss_pred             CChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc---cCCEEEcCCCC
Q 041736          304 ELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL---DLQGFDDKRNC  368 (500)
Q Consensus       304 ~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~---~L~~l~l~~N~  368 (500)
                      .++ .++.+++|++|+|++|+++|.+|.++.++++|++|+|++|+|+|.+|...   .|+.+++++|.
T Consensus       236 ~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         236 DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            765 68889999999999999999999999999999999999999999999754   46666666664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=2.7e-32  Score=266.17  Aligned_cols=236  Identities=24%  Similarity=0.425  Sum_probs=216.8

Q ss_pred             CCCcCcEEEEECCC-CCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCC
Q 041736          118 NHSIRTVAGIDLNH-GDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKL  196 (500)
Q Consensus       118 ~~~~~~l~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  196 (500)
                      ...+++|+.|||++ |++.|.+|..|+++++|++|+|++|+|.+..+..+..+.+|+++++++|++.+.+|..+.++++|
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            45678999999997 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeccCCcCCCCCchhhcC--CCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEecc
Q 041736          197 KFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTN  274 (500)
Q Consensus       197 ~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~  274 (500)
                      +++++++|.++|.+|..+..  ..++.+++++|++++..+..+.......+++.++.+.+.++..+..+.. |+++++++
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~-l~~l~~~~  230 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAK  230 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSC-CSEEECCS
T ss_pred             ceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            99999999999999988766  3458899999999999998888888889999999999999999999987 99999999


Q ss_pred             CCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCc-CccC-
Q 041736          275 NGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNF-FTGE-  352 (500)
Q Consensus       275 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~-  352 (500)
                      |.+.+.++ .+..+++|++|||++|+|+|.+|..++++++|++|+|++|+|+|.+|+ ++++++|+.+++++|+ +.|. 
T Consensus       231 ~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         231 NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             SEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             cccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            99998654 688999999999999999999999999999999999999999999985 5788999999999997 5665 


Q ss_pred             CCCC
Q 041736          353 SPVC  356 (500)
Q Consensus       353 ~p~~  356 (500)
                      +|.|
T Consensus       309 lp~c  312 (313)
T d1ogqa_         309 LPAC  312 (313)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            5655

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4.6e-24  Score=206.43  Aligned_cols=268  Identities=19%  Similarity=0.265  Sum_probs=213.8

Q ss_pred             CCcCceecCCCC--C--CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC
Q 041736          105 CNYTGVFCAQAL--D--NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN  180 (500)
Q Consensus       105 c~~~gv~c~~~~--~--~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  180 (500)
                      |.|+++.|....  .  ..-.+.++.|+|++|.|+...+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            678899996421  0  112367999999999998876678999999999999999999877889999999999999999


Q ss_pred             cCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--CCCCeEEccCCCccC--CCCCcc-CCCCcceEEecccccccc
Q 041736          181 RFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINNNRFSF--ELPDNI-GNSPVSVLVLANNKFHGC  255 (500)
Q Consensus       181 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~n~l~~--~~p~~~-~~~~L~~L~l~~n~l~~~  255 (500)
                      +++ .++..+  ...|+.|++++|.+.+ ++...+.  ..+..+++..|....  .....+ ...+|+++++++|.+. .
T Consensus        90 ~l~-~l~~~~--~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~  164 (305)
T d1xkua_          90 QLK-ELPEKM--PKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T  164 (305)
T ss_dssp             CCS-BCCSSC--CTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred             ccC-cCccch--hhhhhhhhccccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-c
Confidence            998 555443  3689999999999984 4444443  567777877775542  222222 3367999999999987 3


Q ss_pred             CchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcC
Q 041736          256 LPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCS  335 (500)
Q Consensus       256 ~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~  335 (500)
                      ++..+  .. +|++|++++|.+.+..+..+..++.+++|++++|.+++..+..+.++++|++|+|++|.|+ .+|.++.+
T Consensus       165 l~~~~--~~-~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~  240 (305)
T d1xkua_         165 IPQGL--PP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  240 (305)
T ss_dssp             CCSSC--CT-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cCccc--CC-ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-cccccccc
Confidence            45443  34 4999999999999988999999999999999999999888888999999999999999998 77889999


Q ss_pred             CCCCcEEEccCCcCccCCCC----------CccCCEEEcCCCCCCCCCCCCChhhh
Q 041736          336 LPNLRNFSFDYNFFTGESPV----------CLDLQGFDDKRNCLRDKPRQRSTLQC  381 (500)
Q Consensus       336 l~~L~~L~Ls~N~l~g~~p~----------~~~L~~l~l~~N~l~~~~~~~~~~~~  381 (500)
                      +++|++|+|++|+|+.....          ...|+.|++++|.++....+...+.|
T Consensus       241 l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             ccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence            99999999999999864322          23588999999988655445555555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.2e-23  Score=196.40  Aligned_cols=200  Identities=19%  Similarity=0.224  Sum_probs=147.7

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      ..+.++|.++++++. +|..+.  ++|++|+|++|.|++..+..|.++++|++|+|++|+|+ .++ .+..+++|++|+|
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccc
Confidence            345567888888875 566553  57888888888888666677888888888888888887 444 3567888888888


Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL  281 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~  281 (500)
                      ++|++++. +..+.                      ...+|++|++++|.+.+.....+..+.. +++|++++|.+....
T Consensus        85 s~N~l~~~-~~~~~----------------------~l~~L~~L~l~~~~~~~~~~~~~~~l~~-l~~L~l~~n~l~~l~  140 (266)
T d1p9ag_          85 SHNQLQSL-PLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLP  140 (266)
T ss_dssp             CSSCCSSC-CCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCCCC
T ss_pred             cccccccc-ccccc----------------------cccccccccccccccceeeccccccccc-cccccccccccceec
Confidence            88887732 22211                      1234555555555555445555666665 888888888888776


Q ss_pred             ccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCcc
Q 041736          282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTG  351 (500)
Q Consensus       282 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  351 (500)
                      +..+..+.+|+.|++++|+|++..+..+..+.+|++|+|++|+|+ .+|..+..+++|+.|+|++|.+..
T Consensus       141 ~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            677778888888888888888777777888888888888888888 788888888888888888887764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.3e-23  Score=197.49  Aligned_cols=204  Identities=19%  Similarity=0.220  Sum_probs=113.0

Q ss_pred             CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccC-CcCCCCCchhhcC--CCCCeEE
Q 041736          147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRY-NEFEGKIPKALFD--KDLDAVF  223 (500)
Q Consensus       147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~--~~L~~L~  223 (500)
                      .+++|+|++|+|+...+..|.++++|++|++++|++....+..+..+..++.+.... |.++ .++...+.  ++|++|+
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~-~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc-cccchhhcccccCCEEe
Confidence            344444444444433333444444444444444444444444444444444444332 2222 22222111  3444444


Q ss_pred             ccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccC
Q 041736          224 INNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLM  302 (500)
Q Consensus       224 l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~  302 (500)
                      +++|.+.......+.. .+|+.+++++|.+++..+..|..+.+ |++|++++|++++..+.+|.++++|+++++++|+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~-L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccc-hhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            4444444322222222 44566666666666544555666665 777777777776666666677777777777777777


Q ss_pred             CCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC
Q 041736          303 GELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       303 ~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      +..+..|..+++|++|++++|.+.+..+..|..+.+|++|++++|.+.+.
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            66666777777777777777777766666677777777777777776654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=201.44  Aligned_cols=248  Identities=18%  Similarity=0.193  Sum_probs=199.4

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCc-CCcCCCcCchhccCCCCCcEEe
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLS-NNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      ..++.|+|++|+|++.-+..|.++++|++|++++|.+.+.....+..+..++.++.. .|.++...+..|.++++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            467999999999998777789999999999999999998888888999999999875 5667766688899999999999


Q ss_pred             ccCCcCCCCCchhhcC-CCCCeEEccCCCccCCCCCccCC-CCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736          201 LRYNEFEGKIPKALFD-KDLDAVFINNNRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH  278 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~-~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~  278 (500)
                      +++|.+.+.....+.. .+|+.+++++|++++..+..+.. .+|+.|++++|++.+..+..|.++.+ |+++++++|+++
T Consensus       112 l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~-L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCC
T ss_pred             cCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccc-cchhhhhhcccc
Confidence            9999997444433332 78999999999999766666654 67999999999999888889999987 999999999999


Q ss_pred             CCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc-
Q 041736          279 SCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL-  357 (500)
Q Consensus       279 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~-  357 (500)
                      +..+..|..+++|++||+++|++++..+..++.+.+|++|+|++|.+.+.-... .-...++.+....+.+.+..|... 
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~-~l~~~l~~~~~~~~~~~C~~p~~l~  269 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA  269 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch-HHHHHHHhCcCCCCceEeCCchHHc
Confidence            999999999999999999999999988899999999999999999998653211 001123445555566666555432 


Q ss_pred             cCCEEEcCCCCCCC
Q 041736          358 DLQGFDDKRNCLRD  371 (500)
Q Consensus       358 ~L~~l~l~~N~l~~  371 (500)
                      .....+++.+.++|
T Consensus       270 g~~l~~l~~~~l~g  283 (284)
T d1ozna_         270 GRDLKRLAANDLQG  283 (284)
T ss_dssp             TCBGGGSCGGGSCC
T ss_pred             CCccccCCHHHCCC
Confidence            22333444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.1e-22  Score=188.03  Aligned_cols=179  Identities=20%  Similarity=0.236  Sum_probs=146.2

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      ++++.|||++|.|++..+..|.++++|++|+|++|.|+ .++ .++.+++|++|+|++|+++ .++..+.++++|++|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            57999999999999877788999999999999999998 444 4688999999999999998 45678889999999999


Q ss_pred             cCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC
Q 041736          202 RYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL  281 (500)
Q Consensus       202 s~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~  281 (500)
                      ++|.+.+.....+ .                     ...++++|++++|.+.+..+..+..+.. |++|++++|++++..
T Consensus       108 ~~~~~~~~~~~~~-~---------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~-l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_         108 SFNRLTSLPLGAL-R---------------------GLGELQELYLKGNELKTLPPGLLTPTPK-LEKLSLANNNLTELP  164 (266)
T ss_dssp             CSSCCCCCCSSTT-T---------------------TCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCSCCC
T ss_pred             cccccceeecccc-c---------------------cccccccccccccccceecccccccccc-chhcccccccccccC
Confidence            9999873222211 1                     1134556666666666555556666776 999999999999887


Q ss_pred             ccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCC
Q 041736          282 PEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSG  327 (500)
Q Consensus       282 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g  327 (500)
                      +..|..+++|++|||++|+|+ .+|..+..+.+|+.|+|++|.+..
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            788899999999999999999 888888889999999999998763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=1.8e-21  Score=193.65  Aligned_cols=238  Identities=20%  Similarity=0.258  Sum_probs=138.3

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCc-------------
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFP-------------  187 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-------------  187 (500)
                      +++|++|||++|.|++..  .|+++++|++|++++|.+.+..  .++++++|++|++++|.+++...             
T Consensus        65 L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~  140 (384)
T d2omza2          65 LNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  140 (384)
T ss_dssp             CTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             CCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            467777778777776642  3777777788888777776432  36777777777777665542100             


Q ss_pred             --------------------------------------------------hhccCCCCCcEEeccCCcCCCCCchhhcCC
Q 041736          188 --------------------------------------------------YVVLGLPKLKFLDLRYNEFEGKIPKALFDK  217 (500)
Q Consensus       188 --------------------------------------------------~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~  217 (500)
                                                                        ..+..+++++.|++++|.+++..+ .....
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~  219 (384)
T d2omza2         141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILT  219 (384)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCT
T ss_pred             cccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccC
Confidence                                                              122334556666666666663322 23335


Q ss_pred             CCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEecc
Q 041736          218 DLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVS  297 (500)
Q Consensus       218 ~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls  297 (500)
                      +|++|++++|+++. ++......+|+.|++++|.+++..  .++.+.+ |++|++++|.+++..  .+..+..++.++++
T Consensus       220 ~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~-L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~  293 (384)
T d2omza2         220 NLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLA--PLSGLTK-LTELKLGANQISNIS--PLAGLTALTNLELN  293 (384)
T ss_dssp             TCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTT-CSEEECCSSCCCCCG--GGTTCTTCSEEECC
T ss_pred             CCCEEECCCCCCCC-cchhhcccccchhccccCccCCCC--ccccccc-CCEeeccCcccCCCC--cccccccccccccc
Confidence            66666666666653 232223355666666666666432  2555554 666666666665532  24444455555555


Q ss_pred             CcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccC--CCCCccCCEEEcCCCCCCCCC
Q 041736          298 YNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGE--SPVCLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       298 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~--~p~~~~L~~l~l~~N~l~~~~  373 (500)
                      +|.+++ + ..+..+.+++.|++++|++++..  .+..+++|++|++++|+|++.  +..+.+|+.|++++|.+++..
T Consensus       294 ~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         294 ENQLED-I-SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             SSCCSC-C-GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCG
T ss_pred             cccccc-c-cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCCh
Confidence            555543 1 23555666677777777666432  256666777777777766543  222345667777777666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=5.7e-21  Score=184.36  Aligned_cols=242  Identities=20%  Similarity=0.272  Sum_probs=198.5

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR  202 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  202 (500)
                      ..+.+|-++++++. +|..+  .++|++|+|++|+|+...+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~-lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCc-cCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            45678999988875 56655  3689999999999996555689999999999999999998778899999999999999


Q ss_pred             CCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccC-CCCcceEEecccccc--ccCchhhhcccccCcEEEeccCCCCC
Q 041736          203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIG-NSPVSVLVLANNKFH--GCLPLSFGNMSRTLNEVILTNNGLHS  279 (500)
Q Consensus       203 ~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~l~--~~~p~~l~~l~~~L~~L~Ls~n~l~~  279 (500)
                      +|+++ .++... ...++.|++.+|.+.+.....+. ...+..++...|...  ......+..+.+ |+++++++|++..
T Consensus        88 ~n~l~-~l~~~~-~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~-L~~l~l~~n~l~~  164 (305)
T d1xkua_          88 KNQLK-ELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIADTNITT  164 (305)
T ss_dssp             SSCCS-BCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT-CCEEECCSSCCCS
T ss_pred             CCccC-cCccch-hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccc-cCccccccCCccc
Confidence            99998 666543 36889999999998864433332 245677787776543  344567778886 9999999999886


Q ss_pred             CCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCC---CC
Q 041736          280 CLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESP---VC  356 (500)
Q Consensus       280 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p---~~  356 (500)
                       ++..  .+++|+.|++++|.+++..+..+..+..+++|++++|.+++..+.++.++++|++|+|++|+|+....   .+
T Consensus       165 -l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l  241 (305)
T d1xkua_         165 -IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH  241 (305)
T ss_dssp             -CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred             -cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence             4433  36899999999999999989999999999999999999998888889999999999999999985422   24


Q ss_pred             ccCCEEEcCCCCCCCCC
Q 041736          357 LDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       357 ~~L~~l~l~~N~l~~~~  373 (500)
                      .+|+.|++++|.|+...
T Consensus       242 ~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             SSCCEEECCSSCCCCCC
T ss_pred             cCCCEEECCCCccCccC
Confidence            57999999999998653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.83  E-value=1.2e-19  Score=180.26  Aligned_cols=236  Identities=22%  Similarity=0.249  Sum_probs=192.7

Q ss_pred             CCCcCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccC-----------------------------------
Q 041736          118 NHSIRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTL-----------------------------------  162 (500)
Q Consensus       118 ~~~~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-----------------------------------  162 (500)
                      ...+.+|+.|++++|.+.+..  .++++++|+.|+++++.+++..                                   
T Consensus        84 l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  161 (384)
T d2omza2          84 LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF  161 (384)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred             ccCCccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456789999999999998753  4899999999999988775321                                   


Q ss_pred             ----------------------------CccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhh
Q 041736          163 ----------------------------PRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKAL  214 (500)
Q Consensus       163 ----------------------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~  214 (500)
                                                  ...+..++++++|++++|.+++..+  +..+.+|++|++++|+++ .++...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~~l~  238 (384)
T d2omza2         162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLA  238 (384)
T ss_dssp             EESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGGGG
T ss_pred             ccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccchhh
Confidence                                        1234556889999999999996644  456789999999999998 455444


Q ss_pred             cCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEE
Q 041736          215 FDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVF  294 (500)
Q Consensus       215 ~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  294 (500)
                      ...+|+.|++++|.+++. +...+..+|++|++++|++.+..  .+..+.. ++.+++++|.+++.  ..+..+.+++.|
T Consensus       239 ~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~-l~~l~~~~n~l~~~--~~~~~~~~l~~L  312 (384)
T d2omza2         239 SLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNIS--PLAGLTA-LTNLELNENQLEDI--SPISNLKNLTYL  312 (384)
T ss_dssp             GCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG--GGTTCTT-CSEEECCSSCCSCC--GGGGGCTTCSEE
T ss_pred             cccccchhccccCccCCC-CcccccccCCEeeccCcccCCCC--ccccccc-cccccccccccccc--cccchhcccCeE
Confidence            458999999999999864 34445578999999999998643  4677776 99999999999873  458889999999


Q ss_pred             eccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCC--CccCCEEEcCCCC
Q 041736          295 DVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPV--CLDLQGFDDKRNC  368 (500)
Q Consensus       295 ~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~--~~~L~~l~l~~N~  368 (500)
                      ++++|++++..  .+..+++|++|+|++|.|++ ++ .+.++++|++|++++|++++..+-  +..|+.|++++|.
T Consensus       313 ~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         313 TLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA  384 (384)
T ss_dssp             ECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCEE
T ss_pred             ECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCCc
Confidence            99999999643  48899999999999999984 54 589999999999999999987642  4579999999883

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.3e-19  Score=167.01  Aligned_cols=205  Identities=16%  Similarity=0.230  Sum_probs=121.3

Q ss_pred             EEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736          125 AGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN  204 (500)
Q Consensus       125 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  204 (500)
                      ..++++.+.+++.+  .++.+.+|++|++.+|.|+. + ..+..+++|++|+|++|++++..+  +..+.+|++|++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            33444444444432  22344555555555555552 2 235555555555555555553322  455555555555555


Q ss_pred             cCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccc
Q 041736          205 EFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEE  284 (500)
Q Consensus       205 ~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~  284 (500)
                      .++ .++......+|+.++++++...+. ........+..+.++++.+...  ..+..+.+ |++|++++|.+.+.  ..
T Consensus        96 ~~~-~i~~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~-L~~L~l~~n~~~~~--~~  168 (227)
T d1h6ua2          96 PLK-NVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNI--SPLAGLTN-LQYLSIGNAQVSDL--TP  168 (227)
T ss_dssp             CCS-CCGGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTT-CCEEECCSSCCCCC--GG
T ss_pred             ccc-cccccccccccccccccccccccc-chhccccchhhhhchhhhhchh--hhhccccc-cccccccccccccc--hh
Confidence            554 333222224555555555544422 2222334566666666666533  23556665 88888888888764  23


Q ss_pred             cccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccC
Q 041736          285 IGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDY  346 (500)
Q Consensus       285 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~  346 (500)
                      ++++++|++|||++|++++ ++ .+.++++|++|+|++|++++ ++ .+.++++|++|++++
T Consensus       169 l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 LANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             hcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            7788888999998888884 43 47788889999999888884 43 377888888888863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=7.7e-18  Score=154.95  Aligned_cols=187  Identities=16%  Similarity=0.278  Sum_probs=155.5

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+|+.|++.+|+|+..  ..+..+++|++|++++|.+++..  .+..+.+|++|++++|.++ .++ .+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccc-ccc-cccccccccccc
Confidence            56899999999999864  46899999999999999998654  3899999999999999998 444 578999999999


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      ++++.+.+ +........++.+.++.+.+.... ......+|+.|++++|.+.+.  ..++++.+ |++|+|++|++++ 
T Consensus       114 l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~-L~~L~Ls~n~l~~-  187 (227)
T d1h6ua2         114 LTSTQITD-VTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL--TPLANLSK-LTTLKADDNKISD-  187 (227)
T ss_dssp             CTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGTTCTT-CCEEECCSSCCCC-
T ss_pred             cccccccc-cchhccccchhhhhchhhhhchhh-hhccccccccccccccccccc--hhhccccc-ceecccCCCccCC-
Confidence            99999874 443444578899999999887533 344557899999999998754  34788887 9999999999987 


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH  322 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  322 (500)
                      ++ .++++++|++|+|++|++++ ++ .++++++|++|+|++
T Consensus       188 l~-~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 IS-PLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CG-GGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             Ch-hhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            43 48999999999999999994 54 488999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.2e-17  Score=149.93  Aligned_cols=79  Identities=20%  Similarity=0.344  Sum_probs=47.4

Q ss_pred             hhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCC
Q 041736          260 FGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNL  339 (500)
Q Consensus       260 l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L  339 (500)
                      +..+.. ++++++++|.+++.  ..+..+++|+++++++|++++ ++ .+.++++|++|+|++|.|+ .++ .+.++++|
T Consensus       130 l~~l~~-l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L  202 (210)
T d1h6ta2         130 LVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNL  202 (210)
T ss_dssp             GGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTC
T ss_pred             cccccc-cccccccccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCC
Confidence            444444 66666666666542  345556666666666666663 32 2566666777777777665 343 46666677


Q ss_pred             cEEEcc
Q 041736          340 RNFSFD  345 (500)
Q Consensus       340 ~~L~Ls  345 (500)
                      ++|+|+
T Consensus       203 ~~L~Ls  208 (210)
T d1h6ta2         203 DVLELF  208 (210)
T ss_dssp             SEEEEE
T ss_pred             CEEEcc
Confidence            777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=6.5e-17  Score=146.78  Aligned_cols=185  Identities=17%  Similarity=0.229  Sum_probs=136.8

Q ss_pred             cEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEecc
Q 041736          123 TVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLR  202 (500)
Q Consensus       123 ~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls  202 (500)
                      ++...++..+.+++.+..  ..+.+|++|++++|.+++. . .+..+++|++|+|++|++++. + .+..+++|++|+++
T Consensus        25 ~~i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~   98 (210)
T d1h6ta2          25 ETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLD   98 (210)
T ss_dssp             HHHHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECC
T ss_pred             HHHHHHhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccc
Confidence            334456777777766543  3467889999999998743 3 378899999999999999854 3 36788999999999


Q ss_pred             CCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCc
Q 041736          203 YNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLP  282 (500)
Q Consensus       203 ~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p  282 (500)
                      +|+++ .++.....++|+.|++++|.+. .++.......++.+++++|.+++  ...+..+.+ |+++++++|++++. +
T Consensus        99 ~n~i~-~l~~l~~l~~L~~L~l~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~-L~~l~l~~n~l~~i-~  172 (210)
T d1h6ta2          99 ENKVK-DLSSLKDLKKLKSLSLEHNGIS-DINGLVHLPQLESLYLGNNKITD--ITVLSRLTK-LDTLSLEDNQISDI-V  172 (210)
T ss_dssp             SSCCC-CGGGGTTCTTCCEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTT-CSEEECCSSCCCCC-G
T ss_pred             ccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc--ccccccccc-cccccccccccccc-c
Confidence            99988 4554333478888888888776 34444444678888888888764  235666775 88888888888763 3


Q ss_pred             cccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc
Q 041736          283 EEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH  322 (500)
Q Consensus       283 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  322 (500)
                       .++++++|++|+|++|+|+ .++ .+.++++|++|+|++
T Consensus       173 -~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 -PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             -cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence             3778888888888888887 454 578888888888864

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3e-17  Score=152.28  Aligned_cols=198  Identities=17%  Similarity=0.102  Sum_probs=98.8

Q ss_pred             CCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcC-chhccCCCCCcEEeccC-CcCCCCCchhhcC-CCCCeEE
Q 041736          147 DIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF-PYVVLGLPKLKFLDLRY-NEFEGKIPKALFD-KDLDAVF  223 (500)
Q Consensus       147 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~-~~L~~L~  223 (500)
                      ++++|+|++|.|+..-...|.++++|++|+|++|.+...+ +..|..++++++|.+.. |++....+..+.. .+|++++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4555555555554333334455555555555555544322 22344455555555432 3333222222111 4455555


Q ss_pred             ccCCCccCCCCCc-cC-CCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccE-EeccCcc
Q 041736          224 INNNRFSFELPDN-IG-NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTV-FDVSYNK  300 (500)
Q Consensus       224 l~~n~l~~~~p~~-~~-~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~-L~Ls~n~  300 (500)
                      +++|++....... +. ...+..+...++.+.......|..+...++.|++++|+++......+ ...+++. +++++|+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc-cchhhhccccccccc
Confidence            5555443211110 11 12334444455555544444555554347778888888776433333 3444444 4567777


Q ss_pred             cCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEcc
Q 041736          301 LMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFD  345 (500)
Q Consensus       301 l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls  345 (500)
                      ++..-...|.++++|++|+|++|+|+..-+..|.++++|+++++.
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            773333446777888888888888873333445666666555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=2.5e-16  Score=141.63  Aligned_cols=161  Identities=20%  Similarity=0.344  Sum_probs=82.3

Q ss_pred             CCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEc
Q 041736          145 LADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFI  224 (500)
Q Consensus       145 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l  224 (500)
                      +.+|++|++++|.++. + +.+..+++|++|+|++|++++..+  +.++++|++|++++|.+. .++..-...+|++|++
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~~l~~l~~L~~L~l  113 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTL  113 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEEC
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-cccccccccccccccc
Confidence            4455555555555542 2 124555555555555555553221  555555555555555544 2221111123333333


Q ss_pred             cCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCC
Q 041736          225 NNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGE  304 (500)
Q Consensus       225 ~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  304 (500)
                      ++|.+.                       ..  ..+..+.+ |++|++++|++.. + ..+..+++|++|++++|++++ 
T Consensus       114 ~~~~~~-----------------------~~--~~~~~l~~-L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-  164 (199)
T d2omxa2         114 FNNQIT-----------------------DI--DPLKNLTN-LNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-  164 (199)
T ss_dssp             CSSCCC-----------------------CC--GGGTTCTT-CSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-
T ss_pred             cccccc-----------------------cc--cccchhhh-hHHhhhhhhhhcc-c-ccccccccccccccccccccC-
Confidence            333222                       11  12344444 6666666666654 2 245666667777777776663 


Q ss_pred             ChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEE
Q 041736          305 LPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNF  342 (500)
Q Consensus       305 ~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L  342 (500)
                      ++ .++++++|++|++++|++++ ++ .++.+++|++|
T Consensus       165 l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            32 36666777777777777663 33 35666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.4e-16  Score=139.38  Aligned_cols=161  Identities=19%  Similarity=0.318  Sum_probs=119.0

Q ss_pred             cCcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEe
Q 041736          121 IRTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLD  200 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  200 (500)
                      +.+++.|+++++++...  +.+..+++|++|++++|++++..  .+.++++|++|++++|.+.. ++ .+.++++|++|+
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCccccccccccccccc-cc-cccccccccccc
Confidence            46789999999999764  35888999999999999998643  38999999999999999884 44 488999999999


Q ss_pred             ccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCC
Q 041736          201 LRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSC  280 (500)
Q Consensus       201 Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~  280 (500)
                      +++|.+.. +.......+|+.|++++|++.                       . + ..+..+.+ |++|++++|++++.
T Consensus       113 l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~-----------------------~-~-~~l~~~~~-L~~L~l~~n~l~~l  165 (199)
T d2omxa2         113 LFNNQITD-IDPLKNLTNLNRLELSSNTIS-----------------------D-I-SALSGLTS-LQQLNFSSNQVTDL  165 (199)
T ss_dssp             CCSSCCCC-CGGGTTCTTCSEEECCSSCCC-----------------------C-C-GGGTTCTT-CSEEECCSSCCCCC
T ss_pred             cccccccc-ccccchhhhhHHhhhhhhhhc-----------------------c-c-cccccccc-ccccccccccccCC
Confidence            99998874 332222245555555555443                       2 2 23555555 78888888877763


Q ss_pred             CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEE
Q 041736          281 LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQL  318 (500)
Q Consensus       281 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  318 (500)
                        ..++++++|++|++++|++++ ++ .++++++|++|
T Consensus       166 --~~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         166 --KPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             --GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             --ccccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence              247778888888888888874 43 46777777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=5.8e-15  Score=143.80  Aligned_cols=58  Identities=28%  Similarity=0.396  Sum_probs=43.7

Q ss_pred             CCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCccCCEEEcCCCCCCCCC
Q 041736          312 MTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCLDLQGFDDKRNCLRDKP  373 (500)
Q Consensus       312 l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~~L~~l~l~~N~l~~~~  373 (500)
                      +++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+.......+|+.|++++|.++..+
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~L~~lp  340 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFP  340 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCC
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCccccccCCCCEEECcCCcCCCCC
Confidence            468899999999888 56643   56788899999988843333347889999999887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=5.9e-17  Score=144.90  Aligned_cols=172  Identities=20%  Similarity=0.219  Sum_probs=89.5

Q ss_pred             CCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcC-chhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccC
Q 041736          148 IALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKF-PYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINN  226 (500)
Q Consensus       148 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~  226 (500)
                      .+++++++++++ .+|..+.  .++++|+|++|+|++.+ ...|.++++|++|+|++|.+.+..+..+.           
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~-----------   75 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-----------   75 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-----------
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccc-----------
Confidence            346677777776 5565442  45777777777776433 44556666777777766666633222211           


Q ss_pred             CCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCCh
Q 041736          227 NRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELP  306 (500)
Q Consensus       227 n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p  306 (500)
                                 ...+|++|+|++|++.+..+..|.++.+ |++|+|++|+|++..+.+|..+++|++|+|++|.+.....
T Consensus        76 -----------~~~~L~~L~Ls~N~l~~l~~~~F~~l~~-L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          76 -----------GASHIQELQLGENKIKEISNKMFLGLHQ-LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             -----------TCTTCCEEECCSCCCCEECSSSSTTCTT-CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             -----------cccccceeeeccccccccCHHHHhCCCc-ccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence                       1133444444444444444445555554 6666666666666555556666666666666666553221


Q ss_pred             h-hhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736          307 D-TIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       307 ~-~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      . ++.  ..++.+.+..|.++...|..+   ..++.++|+.|.|.
T Consensus       144 ~~~~~--~~l~~~~l~~~~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         144 LAWFA--EWLRKKSLNGGAARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             GHHHH--HHHHHHCCSGGGCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             hHHHh--hhhhhhcccCCCeEeCCChhh---cCCEeeecCHhhCc
Confidence            1 111  123344444555544444332   23344455555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=1.7e-16  Score=141.88  Aligned_cols=128  Identities=20%  Similarity=0.296  Sum_probs=66.8

Q ss_pred             CcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCc-cC-CCCcceEEeccccccccCchhhhcccccCcEEEec
Q 041736          196 LKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDN-IG-NSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILT  273 (500)
Q Consensus       196 L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~-~~-~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls  273 (500)
                      .+.++.++++++ .+|..+. .++++|+|++|+|++.++.. +. ..+|+.|+|++|.+.+..+..|..+.+ |++|+|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp-~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~-L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH-IQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTT-CCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC-CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccc-cceeeec
Confidence            346677777776 5665442 45666666666665433222 11 244555555555555444455555544 5555555


Q ss_pred             cCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCC
Q 041736          274 NNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLS  326 (500)
Q Consensus       274 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~  326 (500)
                      +|+|++..+.+|.++++|++|+|++|+|++..+..|..+.+|++|+|++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            55555544444555555555555555555444444455555555555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.1e-15  Score=141.48  Aligned_cols=210  Identities=13%  Similarity=0.161  Sum_probs=151.3

Q ss_pred             CEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhcC--CCCCeEEccC
Q 041736          149 ALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALFD--KDLDAVFINN  226 (500)
Q Consensus       149 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~--~~L~~L~l~~  226 (500)
                      ++++.+++.++ .+|..+.  .++++|+|++|+|+......|.++++|++|+|++|.+...++...+.  .+++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            46677777776 6665543  57999999999999655567899999999999999998666655443  7888888754


Q ss_pred             -CCccCCCCCccCC-CCcceEEeccccccccCchh-hhcccccCcEEEeccCCCCCCCccccccCC-CccEEeccCcccC
Q 041736          227 -NRFSFELPDNIGN-SPVSVLVLANNKFHGCLPLS-FGNMSRTLNEVILTNNGLHSCLPEEIGLLK-NVTVFDVSYNKLM  302 (500)
Q Consensus       227 -n~l~~~~p~~~~~-~~L~~L~l~~n~l~~~~p~~-l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l~  302 (500)
                       |++....+..+.. .+|++|++++|.+....... +..+.. +..+...++.+.......+..+. .++.|++++|+++
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~-l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK-VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSC-EEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccc-cccccccccccccccccccccccccceeeeccccccc
Confidence             6676555555543 78999999999987543332 334443 67777788888776566666664 7899999999998


Q ss_pred             CCChhhhhCCCCCcEE-EcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCC-ccCCEEE
Q 041736          303 GELPDTIAEMTSLQQL-NVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVC-LDLQGFD  363 (500)
Q Consensus       303 ~~~p~~l~~l~~L~~L-~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~-~~L~~l~  363 (500)
                      . ++.......+++++ ++++|+++..-...|.++++|++|++++|+|+...+.. .++..|.
T Consensus       167 ~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         167 E-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR  228 (242)
T ss_dssp             E-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEE
T ss_pred             c-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccc
Confidence            4 44444455666555 56788888433456889999999999999998554432 3455554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=2.7e-14  Score=138.92  Aligned_cols=223  Identities=22%  Similarity=0.275  Sum_probs=126.5

Q ss_pred             CcEEEEECCCCCCcccCchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEec
Q 041736          122 RTVAGIDLNHGDIASYLPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDL  201 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  201 (500)
                      .+|+.|+|++|+|+. +|..   +.+|+.|++++|.++ .++. +  ...|++|+|++|.+. .++. +..+++|++|++
T Consensus        58 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l  127 (353)
T d1jl5a_          58 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV  127 (353)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence            466777777777763 4543   346677777777666 2221 1  134777777777776 4453 466777777777


Q ss_pred             cCCcCCCCCchhh-------------------cCCCCCeEEccCCCccCC-------------------CCCccCCCCcc
Q 041736          202 RYNEFEGKIPKAL-------------------FDKDLDAVFINNNRFSFE-------------------LPDNIGNSPVS  243 (500)
Q Consensus       202 s~N~l~g~~p~~~-------------------~~~~L~~L~l~~n~l~~~-------------------~p~~~~~~~L~  243 (500)
                      ++|.+........                   ....++.++++.|.+...                   ++.......++
T Consensus       128 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~  207 (353)
T d1jl5a_         128 DNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT  207 (353)
T ss_dssp             CSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCC
T ss_pred             ccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccccccccccccccccccccccccc
Confidence            7776652211100                   003445555555544321                   11111113466


Q ss_pred             eEEeccccccccCchhhhcc----------------cccCcEEEeccCCCCCC----------------CccccccCCCc
Q 041736          244 VLVLANNKFHGCLPLSFGNM----------------SRTLNEVILTNNGLHSC----------------LPEEIGLLKNV  291 (500)
Q Consensus       244 ~L~l~~n~l~~~~p~~l~~l----------------~~~L~~L~Ls~n~l~~~----------------~p~~~~~l~~L  291 (500)
                      .+++++|.... ++.....+                ...+..+++..+.+.+.                +......+++|
T Consensus       208 ~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L  286 (353)
T d1jl5a_         208 TIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL  286 (353)
T ss_dssp             EEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTC
T ss_pred             ccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCC
Confidence            66666665442 21111110                00123333333222210                11111235789


Q ss_pred             cEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCccCCCCCc-cCCEEEc
Q 041736          292 TVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFTGESPVCL-DLQGFDD  364 (500)
Q Consensus       292 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~~p~~~-~L~~l~l  364 (500)
                      ++|+|++|+|+ .+|..   +++|++|+|++|+|+ .+|..   +.+|++|++++|.++. +|... .|+.|.+
T Consensus       287 ~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp~~~~~L~~L~~  351 (353)
T d1jl5a_         287 EELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDLRM  351 (353)
T ss_dssp             CEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CCCCCTTCCEEEC
T ss_pred             CEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCCC-CCccccccCeeEC
Confidence            99999999999 67753   578999999999998 67653   4689999999999984 45433 5776655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.56  E-value=3.4e-16  Score=153.07  Aligned_cols=240  Identities=19%  Similarity=0.239  Sum_probs=108.2

Q ss_pred             CcEEEEECCCCCCccc----CchhhcCCCCCCEEEcCCCCCCcc----------CCccccCCCCCCEEeCcCCcCCCc--
Q 041736          122 RTVAGIDLNHGDIASY----LPEELGLLADIALFHVNTNRFCGT----------LPRSFNKLKLLFELDLSNNRFAGK--  185 (500)
Q Consensus       122 ~~l~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----------~p~~l~~l~~L~~L~Ls~n~l~~~--  185 (500)
                      ..|+.|+|++|.+...    +...+...++|+.|+++++.+...          +...+..+++|++|+|++|.++..  
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            3456666666665332    223345556666666665543311          112234455666666666666543  


Q ss_pred             --CchhccCCCCCcEEeccCCcCCCCCchhhcCCCCCeEEccCCCccCCCCCccCCCCcceEEecccccccc----Cchh
Q 041736          186 --FPYVVLGLPKLKFLDLRYNEFEGKIPKALFDKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGC----LPLS  259 (500)
Q Consensus       186 --~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~----~p~~  259 (500)
                        +...+..+++|++|++++|.+...-...+.. .|..+....        .......|+.+.+++|.+...    +...
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-~l~~~~~~~--------~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-ALQELAVNK--------KAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-HHHHHHHHH--------HHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             cchhhhhcccccchheecccccccccccccccc-ccccccccc--------ccccCcccceeecccccccccccccccch
Confidence              2233344566666666666553110000000 000000000        000112344455555444322    1122


Q ss_pred             hhcccccCcEEEeccCCCCCC-----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCC--
Q 041736          260 FGNMSRTLNEVILTNNGLHSC-----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGT--  328 (500)
Q Consensus       260 l~~l~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~--  328 (500)
                      +..... |++|+|++|.++..     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.|++.  
T Consensus       182 l~~~~~-L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         182 FQSHRL-LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHHCTT-CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhhh-hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence            233333 66666666655431     222344555666666666655421    223344556666666666665532  


Q ss_pred             --Cchhhc--CCCCCcEEEccCCcCccCC----C-----CCccCCEEEcCCCCCCC
Q 041736          329 --VPDSVC--SLPNLRNFSFDYNFFTGES----P-----VCLDLQGFDDKRNCLRD  371 (500)
Q Consensus       329 --ip~~l~--~l~~L~~L~Ls~N~l~g~~----p-----~~~~L~~l~l~~N~l~~  371 (500)
                        +-..+.  ....|++|++++|+++..-    .     ....|+.|++++|.+..
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence              112222  2245666666666654310    0     12245666666666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=3.4e-15  Score=145.85  Aligned_cols=223  Identities=17%  Similarity=0.175  Sum_probs=145.4

Q ss_pred             CchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCc----------CchhccCCCCCcEEeccC
Q 041736          138 LPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGK----------FPYVVLGLPKLKFLDLRY  203 (500)
Q Consensus       138 ~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----------~p~~l~~l~~L~~L~Ls~  203 (500)
                      +...+.+...|+.|+|++|.|...    +...+...++|+.|+++++.+...          +...+..+++|++|+|++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            344567788899999999888643    334456778889999887755421          223456677888888888


Q ss_pred             CcCCCCCchhhc-----CCCCCeEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCC
Q 041736          204 NEFEGKIPKALF-----DKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLH  278 (500)
Q Consensus       204 N~l~g~~p~~~~-----~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~  278 (500)
                      |.+...--..+.     .++|++|++++|.+.......+. ..+..+.         ......... .|+.|++++|.++
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~-~~l~~~~---------~~~~~~~~~-~L~~l~l~~n~i~  171 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA-RALQELA---------VNKKAKNAP-PLRSIICGRNRLE  171 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH-HHHHHHH---------HHHHHHTCC-CCCEEECCSSCCT
T ss_pred             cccccccccchhhhhcccccchheeccccccccccccccc-ccccccc---------cccccccCc-ccceeeccccccc
Confidence            887654222221     25666666666655411000000 0000000         000112233 4999999999987


Q ss_pred             CC----CccccccCCCccEEeccCcccCCC-----ChhhhhCCCCCcEEEcccCCCCCC----CchhhcCCCCCcEEEcc
Q 041736          279 SC----LPEEIGLLKNVTVFDVSYNKLMGE-----LPDTIAEMTSLQQLNVAHNMLSGT----VPDSVCSLPNLRNFSFD  345 (500)
Q Consensus       279 ~~----~p~~~~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~N~l~g~----ip~~l~~l~~L~~L~Ls  345 (500)
                      ..    +...+.....|++|+|++|.|+..     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|+
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            43    334456788999999999998742     223466789999999999998643    44567789999999999


Q ss_pred             CCcCccC--------C--CCCccCCEEEcCCCCCCC
Q 041736          346 YNFFTGE--------S--PVCLDLQGFDDKRNCLRD  371 (500)
Q Consensus       346 ~N~l~g~--------~--p~~~~L~~l~l~~N~l~~  371 (500)
                      +|.|++.        +  .....++.|++++|.+..
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            9999753        1  123469999999998754

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.7e-15  Score=142.44  Aligned_cols=60  Identities=13%  Similarity=0.068  Sum_probs=32.8

Q ss_pred             CCCCCEEEcCCCCCCcc-CCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCC
Q 041736          145 LADIALFHVNTNRFCGT-LPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYN  204 (500)
Q Consensus       145 l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N  204 (500)
                      ..+|++|+|+++.++.. +...+..+++|++|+|+++.+++.....+.++++|++|+|+++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            34556666665555432 2233455556666666666555555555555566666666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.5e-15  Score=151.61  Aligned_cols=87  Identities=16%  Similarity=0.243  Sum_probs=59.7

Q ss_pred             cCcEEEEECCCCCCcc----cCchhhcCCCCCCEEEcCCCCCCcc----CCcccc-CCCCCCEEeCcCCcCCCc----Cc
Q 041736          121 IRTVAGIDLNHGDIAS----YLPEELGLLADIALFHVNTNRFCGT----LPRSFN-KLKLLFELDLSNNRFAGK----FP  187 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~Ls~n~l~~~----~p  187 (500)
                      +++++.|+|++|+++.    .+...+..+++|++|+|++|.|+..    +...+. ...+|++|+|++|++++.    +.
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~  105 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  105 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccccc
Confidence            4667788888887753    2345567788888888888887532    122222 234688888888888743    44


Q ss_pred             hhccCCCCCcEEeccCCcCC
Q 041736          188 YVVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       188 ~~l~~l~~L~~L~Ls~N~l~  207 (500)
                      ..+..+++|++|+|++|.++
T Consensus       106 ~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         106 STLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHTTSCTTCCEEECCSSBCH
T ss_pred             chhhccccccccccccccch
Confidence            56677888888888888764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-14  Score=136.76  Aligned_cols=207  Identities=19%  Similarity=0.208  Sum_probs=122.3

Q ss_pred             cCcEEEEECCCCCCccc-CchhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCC-cCCCc-CchhccCCCCCc
Q 041736          121 IRTVAGIDLNHGDIASY-LPEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNN-RFAGK-FPYVVLGLPKLK  197 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~~L~  197 (500)
                      ..++++|||+++.+... +...+.++++|++|+|+++.+++.....++.+++|++|+|+++ .++.. +...+..+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            35788888888877544 3445678888999999888888777777888888999998885 45532 222345678888


Q ss_pred             EEeccCC-cCCCCC-chhhc--CCCCCeEEccCCCccCCCCCccCCCCcceEEecccccccc-CchhhhcccccCcEEEe
Q 041736          198 FLDLRYN-EFEGKI-PKALF--DKDLDAVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGC-LPLSFGNMSRTLNEVIL  272 (500)
Q Consensus       198 ~L~Ls~N-~l~g~~-p~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~-~p~~l~~l~~~L~~L~L  272 (500)
                      +|+++++ .++... ...+.  ..+|+.|+++++..                     .++.. +...+.++.+ |++|++
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------~i~~~~l~~l~~~~~~-L~~L~L  182 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------------------NLQKSDLSTLVRRCPN-LVHLDL  182 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG---------------------GSCHHHHHHHHHHCTT-CSEEEC
T ss_pred             ccccccccccccccchhhhcccccccchhhhccccc---------------------cccccccccccccccc-cccccc
Confidence            8888875 333111 11111  13444444433210                     11111 1112233454 777777


Q ss_pred             ccC-CCCCCCccccccCCCccEEeccCc-ccCCCChhhhhCCCCCcEEEcccCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736          273 TNN-GLHSCLPEEIGLLKNVTVFDVSYN-KLMGELPDTIAEMTSLQQLNVAHNMLSGTVPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       273 s~n-~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      ++| .+++.....+.++++|++|+|++| .+++.....++++++|+.|+++++--.+.+......+++|+   +..++++
T Consensus       183 ~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls  259 (284)
T d2astb2         183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFT  259 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSC
T ss_pred             ccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCC
Confidence            765 356555566777777777777774 56655555667777777777777622222222223444443   4555665


Q ss_pred             cC
Q 041736          351 GE  352 (500)
Q Consensus       351 g~  352 (500)
                      +.
T Consensus       260 ~~  261 (284)
T d2astb2         260 TI  261 (284)
T ss_dssp             CT
T ss_pred             CC
Confidence            44

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-15  Score=152.77  Aligned_cols=63  Identities=21%  Similarity=0.311  Sum_probs=47.8

Q ss_pred             cCcEEEEECCCCCCccc----Cchhhc-CCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCC
Q 041736          121 IRTVAGIDLNHGDIASY----LPEELG-LLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFA  183 (500)
Q Consensus       121 ~~~l~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~  183 (500)
                      .++|+.|||++|.|+..    +...+. ...+|++|+|++|.+++.    +...+..+++|++|+|++|.++
T Consensus        54 ~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          54 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            46799999999998532    222232 235799999999999854    4456778999999999999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3.2e-13  Score=110.91  Aligned_cols=55  Identities=29%  Similarity=0.443  Sum_probs=28.4

Q ss_pred             EEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCC
Q 041736          150 LFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       150 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  207 (500)
                      +|+|++|+++ .++ .+..+.+|++|++++|+|+ .+|..+..+++|++|++++|+++
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~   56 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE   56 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc
Confidence            4555555554 232 2455555555555555555 34444555555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.7e-13  Score=111.41  Aligned_cols=104  Identities=25%  Similarity=0.349  Sum_probs=77.8

Q ss_pred             ceEEeccccccccCchhhhcccccCcEEEeccCCCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEccc
Q 041736          243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAH  322 (500)
Q Consensus       243 ~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  322 (500)
                      ++|++++|+++ .++ .+..+.. |++|++++|.++. +|..++.+++|++|++++|+|+ .++ .+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~-L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLL-VTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTT-CCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCC-CCEEECCCCccCc-chhhhhhhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            35677777776 333 4777776 8888888888876 6667888888888888888888 444 478888888888888


Q ss_pred             CCCCCCC-chhhcCCCCCcEEEccCCcCccC
Q 041736          323 NMLSGTV-PDSVCSLPNLRNFSFDYNFFTGE  352 (500)
Q Consensus       323 N~l~g~i-p~~l~~l~~L~~L~Ls~N~l~g~  352 (500)
                      |+|++.. ...+..+++|++|++++|.+++.
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            8887432 24577788888888888887654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-13  Score=117.78  Aligned_cols=57  Identities=25%  Similarity=0.300  Sum_probs=28.2

Q ss_pred             cccccCcEEEeccCCCCCCCc-cccccCCCccEEeccCcccCCCC---hhhhhCCCCCcEEE
Q 041736          262 NMSRTLNEVILTNNGLHSCLP-EEIGLLKNVTVFDVSYNKLMGEL---PDTIAEMTSLQQLN  319 (500)
Q Consensus       262 ~l~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~  319 (500)
                      .+.. |++|++++|+++..-. ..+..+++|++|++++|.++..-   ...+..+++|++||
T Consensus        85 ~l~~-L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          85 ALPD-LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HCTT-CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccc-cccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            3443 6666666666554211 24455566666666666554211   11344455555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.8e-13  Score=116.04  Aligned_cols=126  Identities=18%  Similarity=0.113  Sum_probs=60.7

Q ss_pred             cCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCCchhhc--CCCCC
Q 041736          143 GLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKIPKALF--DKDLD  220 (500)
Q Consensus       143 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~--~~~L~  220 (500)
                      .+..+|++|+|++|+|+ .++..+..+.+|++|+|++|+|+ .++ .+..+++|++|++++|+++ .++..++  ..+|+
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccccc
Confidence            34445555555555554 23333444555555555555555 222 2445555555555555554 2222221  13344


Q ss_pred             eEEccCCCccCCCCCccCCCCcceEEeccccccccCchhhhcccccCcEEEeccCCCCCCC---ccccccCCCccEEe
Q 041736          221 AVFINNNRFSFELPDNIGNSPVSVLVLANNKFHGCLPLSFGNMSRTLNEVILTNNGLHSCL---PEEIGLLKNVTVFD  295 (500)
Q Consensus       221 ~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n~l~~~~---p~~~~~l~~L~~L~  295 (500)
                      +|++++|++.. ++                     .-..+..+.+ |++|++++|.++...   ...+..+++|++||
T Consensus        91 ~L~L~~N~i~~-~~---------------------~l~~l~~l~~-L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVE-LG---------------------DLDPLASLKS-LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCC-GG---------------------GGGGGGGCTT-CCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccc-cc---------------------cccccccccc-cchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            44444333331 00                     0023445554 777777777665521   12466777888777

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=6.3e-14  Score=125.32  Aligned_cols=42  Identities=14%  Similarity=0.231  Sum_probs=24.3

Q ss_pred             hhcccccCcEEEeccCCCCCCCc-cccccCCCccEEeccCcccC
Q 041736          260 FGNMSRTLNEVILTNNGLHSCLP-EEIGLLKNVTVFDVSYNKLM  302 (500)
Q Consensus       260 l~~l~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~  302 (500)
                      +..+.+ |++|++++|+++.... ..+..+++|++|+|++|.+.
T Consensus       111 ~~~l~~-L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         111 IEKLVN-LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHH-SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccc-ccccccccchhccccccccccCCCccceeecCCCccc
Confidence            445554 7777777766655211 34556666666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.7e-13  Score=122.36  Aligned_cols=66  Identities=21%  Similarity=0.206  Sum_probs=30.4

Q ss_pred             chhhcCCCCCCEEEcCCCCCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCC
Q 041736          139 PEELGLLADIALFHVNTNRFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       139 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  207 (500)
                      +..+..+.+|++|+|++|+|+ .++ .|.++++|++|+|++|+++ .++..+..+.+|++|++++|+++
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            344555555555555555555 222 3455555555555555544 23322222233444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.3e-11  Score=102.86  Aligned_cols=105  Identities=16%  Similarity=0.109  Sum_probs=76.4

Q ss_pred             ceEEeccccccccCchhhhcccccCcEEEeccC-CCCCCCccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcc
Q 041736          243 SVLVLANNKFHGCLPLSFGNMSRTLNEVILTNN-GLHSCLPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVA  321 (500)
Q Consensus       243 ~~L~l~~n~l~~~~p~~l~~l~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  321 (500)
                      +.++..++++. .++..+..+.+ |++|++++| .++...+..|.++++|+.|+|++|+|+...+..|..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~-~~p~~l~~l~~-l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGAL-DSLHHLPGAEN-LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCC-TTTTTSCSCSC-CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCc-cCcccccCccc-cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            44566666655 45566666775 888888765 4777666778888888888888888886667778888888888888


Q ss_pred             cCCCCCCCchhhcCCCCCcEEEccCCcCc
Q 041736          322 HNMLSGTVPDSVCSLPNLRNFSFDYNFFT  350 (500)
Q Consensus       322 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~  350 (500)
                      +|+|+ .++.......+|++|+|++|.|.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            88888 55544444446888888888774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-10  Score=99.62  Aligned_cols=101  Identities=14%  Similarity=0.156  Sum_probs=69.1

Q ss_pred             EECCCCCCcccCchhhcCCCCCCEEEcCCC-CCCccCCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCc
Q 041736          127 IDLNHGDIASYLPEELGLLADIALFHVNTN-RFCGTLPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNE  205 (500)
Q Consensus       127 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~  205 (500)
                      ++.+++++.. ++..+..+++|++|+|++| .|+..-+..|.++++|++|+|++|+|+...+..|..+++|++|+|++|+
T Consensus        13 l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            3444444433 4555677788888888655 4775556678888888888888888886667778888888888888888


Q ss_pred             CCCCCchhhcC-CCCCeEEccCCCc
Q 041736          206 FEGKIPKALFD-KDLDAVFINNNRF  229 (500)
Q Consensus       206 l~g~~p~~~~~-~~L~~L~l~~n~l  229 (500)
                      ++ .++...+. .+|++|+|++|.+
T Consensus        92 l~-~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          92 LE-SLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CS-CCCSTTTCSCCCCEEECCSSCC
T ss_pred             Cc-ccChhhhccccccccccCCCcc
Confidence            87 55544443 4555666655555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.8e-08  Score=83.28  Aligned_cols=87  Identities=24%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             CchhhhcccccCcEEEeccCCCCCC--CccccccCCCccEEeccCcccCCCChhhhhCCCCCcEEEcccCCCCCCCch--
Q 041736          256 LPLSFGNMSRTLNEVILTNNGLHSC--LPEEIGLLKNVTVFDVSYNKLMGELPDTIAEMTSLQQLNVAHNMLSGTVPD--  331 (500)
Q Consensus       256 ~p~~l~~l~~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~g~ip~--  331 (500)
                      +...+..+.. |++|+|++|+|+..  +...+..+++|+.|||++|.|+..-........+|+.|++++|.+.+....  
T Consensus        57 l~~~~~~~~~-L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPE-LLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHCTT-CCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hHHHHHhCCC-CCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            3334456665 99999999999874  245567889999999999999853332344556789999999998765432  


Q ss_pred             -----hhcCCCCCcEEE
Q 041736          332 -----SVCSLPNLRNFS  343 (500)
Q Consensus       332 -----~l~~l~~L~~L~  343 (500)
                           .+..+++|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                 356788888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.1e-06  Score=74.54  Aligned_cols=70  Identities=19%  Similarity=0.125  Sum_probs=43.7

Q ss_pred             hhcCCCCCCEEEcCCCCCCcc--CCccccCCCCCCEEeCcCCcCCCcCchhccCCCCCcEEeccCCcCCCCC
Q 041736          141 ELGLLADIALFHVNTNRFCGT--LPRSFNKLKLLFELDLSNNRFAGKFPYVVLGLPKLKFLDLRYNEFEGKI  210 (500)
Q Consensus       141 ~l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~  210 (500)
                      .+..+++|++|+|++|+|+..  +...+..+++|++|+|++|+++..-.-......+|+.|++++|.+....
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCc
Confidence            344567777777777777643  2344566777777777777777433223333446777777777776543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=5.2e-06  Score=70.57  Aligned_cols=81  Identities=17%  Similarity=0.164  Sum_probs=41.3

Q ss_pred             CcEEEeccCCCCC----CCccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEcccCCCCCC-------Cch
Q 041736          267 LNEVILTNNGLHS----CLPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNVAHNMLSGT-------VPD  331 (500)
Q Consensus       267 L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~g~-------ip~  331 (500)
                      |++|+|++|.+..    .+...+...+.|++|+|++|.|++.    +-..+....+|++|+|++|.+...       +..
T Consensus        46 L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~  125 (167)
T d1pgva_          46 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM  125 (167)
T ss_dssp             CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred             cceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHH
Confidence            6666666666542    1223344455666666666666532    222344455666666666544311       223


Q ss_pred             hhcCCCCCcEEEccCC
Q 041736          332 SVCSLPNLRNFSFDYN  347 (500)
Q Consensus       332 ~l~~l~~L~~L~Ls~N  347 (500)
                      .+...++|+.|+++++
T Consensus       126 ~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         126 AIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHCSSCCEEECCCC
T ss_pred             HHHhCCCccEeeCcCC
Confidence            3444555666665554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=1.3e-05  Score=68.08  Aligned_cols=86  Identities=12%  Similarity=0.082  Sum_probs=61.5

Q ss_pred             CcEEEEECCCC-CCccc----CchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCc----Cch
Q 041736          122 RTVAGIDLNHG-DIASY----LPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGK----FPY  188 (500)
Q Consensus       122 ~~l~~L~L~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~  188 (500)
                      ++|++|+|+++ .+...    +-..+.....|++|+|++|.+...    +...+...+.|++|+|++|.++..    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            57888999874 45432    334566778899999999888732    334455678899999999988743    344


Q ss_pred             hccCCCCCcEEeccCCcCC
Q 041736          189 VVLGLPKLKFLDLRYNEFE  207 (500)
Q Consensus       189 ~l~~l~~L~~L~Ls~N~l~  207 (500)
                      .+...++|++|+|++|.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSC
T ss_pred             HHHhCCcCCEEECCCCcCC
Confidence            5667788888888888765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.09  E-value=9e-05  Score=62.43  Aligned_cols=86  Identities=16%  Similarity=0.155  Sum_probs=54.3

Q ss_pred             CcEEEEECCC-CCCccc----CchhhcCCCCCCEEEcCCCCCCcc----CCccccCCCCCCEEeCcCCcCCCc----Cch
Q 041736          122 RTVAGIDLNH-GDIASY----LPEELGLLADIALFHVNTNRFCGT----LPRSFNKLKLLFELDLSNNRFAGK----FPY  188 (500)
Q Consensus       122 ~~l~~L~L~~-n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~p~  188 (500)
                      +.|++|+|++ +.++..    +-..+...++|++|+|++|.++..    +...+.....|++|++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            5677888886 445332    334456777888888888887643    233445567788888888877643    334


Q ss_pred             hccCCCCCcEEecc--CCcCC
Q 041736          189 VVLGLPKLKFLDLR--YNEFE  207 (500)
Q Consensus       189 ~l~~l~~L~~L~Ls--~N~l~  207 (500)
                      .+...++|+.++|+  +|.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHhCccccEEeeccCCCcCc
Confidence            55666777765553  45554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.01  E-value=7.3e-05  Score=63.04  Aligned_cols=82  Identities=16%  Similarity=0.279  Sum_probs=38.2

Q ss_pred             CcEEEeccCCCCCC----CccccccCCCccEEeccCcccCCC----ChhhhhCCCCCcEEEc--ccCCCCC----CCchh
Q 041736          267 LNEVILTNNGLHSC----LPEEIGLLKNVTVFDVSYNKLMGE----LPDTIAEMTSLQQLNV--AHNMLSG----TVPDS  332 (500)
Q Consensus       267 L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L--~~N~l~g----~ip~~  332 (500)
                      |++|++++|.++..    +...+.....|+.|++++|.++..    +-..+...++|+.++|  ++|.+..    .+...
T Consensus        48 L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~  127 (166)
T d1io0a_          48 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM  127 (166)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH
T ss_pred             cCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHH
Confidence            55566665555432    222334445566666666555431    2233344455555444  2344432    12233


Q ss_pred             hcCCCCCcEEEccCCc
Q 041736          333 VCSLPNLRNFSFDYNF  348 (500)
Q Consensus       333 l~~l~~L~~L~Ls~N~  348 (500)
                      +...++|+.|+++.+.
T Consensus       128 L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         128 LEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHCSSCCEEECCCSS
T ss_pred             HHhCCCcCEEeCcCCC
Confidence            4445555555555443