Citrus Sinensis ID: 041748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MEDTEEEEEFLALRLAIVASDSCSVDKQRKRKRITRVSLNSSNISPYHHEGCCVSEGKIFRLLQMREQMLKLDHKRKGVVDEDGNNNNKGLHLIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTEEEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHCV
ccccHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHcccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEEcccEEEEEEcccEEEEEEEcccc
ccccHHHHHHHHccEEEEccccccccHHHHcccEEEEEEcccccccccccccEEcccHHHHHHHHHHHHHHcccccccEEEEccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHcccccccEEEEEHHHHHHccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEccccEEEEcccccEEEEEEccccc
MEDTEEEEEFLALRLAIVAsdscsvdkqrkrkritrvslnssnispyhhegccvsegKIFRLLQMREQMLKLDhkrkgvvdedgnnnnkgLHLIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLtrrspfyemitkqpteeEEFLAFtdlyrvspyfqlAHFTANQAILEAFEEQIENNNRALHVidfdvsygfqwpSLIQSLSEkatngnrisfriTGFGRSIEELQETENRLVSFSKSFRNLVFEFQGlirgsrlvnIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVeqegsrsprnFLSRFMESLHYFAAMFDslddclpqesnkrLSIEKNYLGKEIKSMlncdesdngnydnyypryerMETWKARMEshefggikmSSKSLIQAKLLLKIRThycplqfdeennnngfkvferydgkaislgwQDRCLLTATAWHCV
MEDTEEEEEFLALRLaivasdscsvdkqrkrkritrvslnssnispyhhegcCVSEGKIFRLLQMREQMLKLDHKRKGVVDEDGNNNNKGLHLIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTEEEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLsekatngnriSFRITGFGRSIEELQETENRLVSFSKSFRNLVFEfqglirgsrlvNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVtlveqegsrspRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSmlncdesdngnyDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHCV
MEDTeeeeeFLALRLAIVASDSCSVDKQRKRKRITRVSLNSSNISPYHHEGCCVSEGKIFRLLQMREQMLKLDHKRKGVVDEDGNNNNKGlhlihlllitataaDENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTEEEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHCV
*********FLALRLAIVASDSC*******************NISPYHHEGCCVSEGKIFRLLQMREQMLKLDHKRKGVV*****NNNKGLHLIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTEEEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQ******RNFLSRFMESLHYFAAMFDSLDDCLP******LSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHC*
**********************************************************************************************HLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPF**********EEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSE****GNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHCV
*********FLALRLAIVASDS***********ITRVSLNSSNISPYHHEGCCVSEGKIFRLLQMREQMLKLDHKRKGVVDEDGNNNNKGLHLIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTEEEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHCV
******EEEFLALRLAIVASDSCSVDKQRKRKRITRVSLNSSNISPYHHEGCCVSEGKIFRLLQMREQMLKLDHKRKGVVDEDGNNNNKGLHLIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTEEEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHCV
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MEDTEEEEEFLALRLAIVASDSCSVDKQRKRKRITRVSLNSSNISPYHHEGCCVSEGKIFRLLQMREQMLKLDHKRKGVVDEDGNNNNKGLHLIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTEEEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHCV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query479 2.2.26 [Sep-21-2011]
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.732 0.594 0.315 6e-48
Q6EI06579 DELLA protein GAIP OS=Cuc N/A no 0.751 0.621 0.329 9e-48
Q9ST48630 DELLA protein DWARF8 OS=Z N/A no 0.743 0.565 0.306 9e-48
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.743 0.614 0.326 2e-47
Q9SLH3587 DELLA protein RGA OS=Arab yes no 0.745 0.608 0.320 2e-47
Q9LQT8533 DELLA protein GAI OS=Arab no no 0.743 0.667 0.326 6e-47
Q5BN23573 DELLA protein RGA1 OS=Bra N/A no 0.743 0.621 0.321 2e-46
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.736 0.600 0.319 2e-46
Q8GXW1547 DELLA protein RGL2 OS=Ara no no 0.749 0.656 0.332 3e-46
Q9S7H5413 Scarecrow-like protein 21 no no 0.732 0.849 0.315 7e-46
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function desciption
 Score =  192 bits (487), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 130/412 (31%), Positives = 217/412 (52%), Gaps = 61/412 (14%)

Query: 85  NNNNKGLHLIHLLLITATAADENNVSLALENLTEL-YQTVSLTGDSVQRVVAHFADGLAA 143
           ++   G+ L+H L+  A A  + N+ LA   + ++ +  VS  G ++++V  +FA+GLA 
Sbjct: 206 DSQETGIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAG-AMRKVATYFAEGLAR 264

Query: 144 RLLTRRSPFYEMITKQPTEEEEFLAFTDL-----YRVSPYFQLAHFTANQAILEAFEEQI 198
           R+       Y +   +P +     +F+D+     Y   PY + AHFTANQAILEAFE   
Sbjct: 265 RI-------YRLYPDKPLDS----SFSDILQMHFYETCPYLKFAHFTANQAILEAFE--- 310

Query: 199 ENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRS----IEELQETEN 254
               + +HVIDF +  G QWP+L+Q+L+ +   G   SFR+TG G       + L E   
Sbjct: 311 --GKKRVHVIDFSMKQGMQWPALMQALALRP--GGPPSFRLTGIGPPSTDNTDHLHEVGW 366

Query: 255 RLVSFSKSFRNLVFEFQGLIRGS------RLVNIRKKKHETVAANLVFHLNTLKIYLK-I 307
           +L   +++  ++ FE++G +  S       ++ +R    E+VA N VF L++L      I
Sbjct: 367 KLAQLAETI-HVEFEYRGFVANSLADLDASMLELRDG--ESVAVNSVFELHSLLARPGGI 423

Query: 308 SDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDC--LPQESNKR 365
              L+ V+ +KP IVT+VEQE + +   FL RF ESLHY++ +FDSL+ C   P  +  +
Sbjct: 424 ERVLSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDK 483

Query: 366 LSIEKNYLGKEIKSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQ 425
           L + + YLG++I +++ C+  +         R+E +  W+AR+ S  F  + + S +  Q
Sbjct: 484 L-MSEVYLGQQICNVVACEGPERVE------RHETLAQWRARLGSAGFDPVNLGSNAFKQ 536

Query: 426 AKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWH 477
           A +LL +               +G++V E  +   + LGW  R L+  +AW 
Sbjct: 537 ASMLLALFA-----------GGDGYRVEE--NNGCLMLGWHTRPLIATSAWQ 575
Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Vitis vinifera (taxid: 29760)
>sp|Q6EI06|GAIP_CUCMA DELLA protein GAIP OS=Cucurbita maxima GN=GAIP PE=2 SV=1 Back     alignment and function description
>sp|Q9ST48|DWRF8_MAIZE DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1 Back     alignment and function description
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description
>sp|Q5BN23|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q8GXW1|RGL2_ARATH DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2 Back     alignment and function description
>sp|Q9S7H5|SCL21_ARATH Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query479
224135483463 GRAS family transcription factor [Populu 0.935 0.967 0.755 0.0
224146420463 GRAS family transcription factor [Populu 0.958 0.991 0.739 0.0
225463934455 PREDICTED: DELLA protein RGL2 [Vitis vin 0.949 1.0 0.741 0.0
356533989465 PREDICTED: protein SCARECROW 1-like [Gly 0.945 0.974 0.674 0.0
356574591462 PREDICTED: protein SCARECROW-like [Glyci 0.958 0.993 0.684 1e-180
255571808471 DELLA protein GAI1, putative [Ricinus co 0.943 0.959 0.721 1e-178
357443431461 Protein SCARECROW [Medicago truncatula] 0.958 0.995 0.648 1e-172
356561361471 PREDICTED: DELLA protein GAI-like [Glyci 0.874 0.889 0.714 1e-167
356499014476 PREDICTED: DELLA protein GAI-like [Glyci 0.878 0.884 0.709 1e-163
147800574419 hypothetical protein VITISV_037741 [Viti 0.816 0.933 0.738 1e-155
>gi|224135483|ref|XP_002327229.1| GRAS family transcription factor [Populus trichocarpa] gi|222835599|gb|EEE74034.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  686 bits (1771), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/462 (75%), Positives = 395/462 (85%), Gaps = 14/462 (3%)

Query: 18  VASDSCSVDKQRKRKRITRVSLNSSNISPYHHEGCCVSEGKIFRLLQMREQMLKLDHKRK 77
             +DS   D +RKRKR     + +  ++ Y  EGC  SE KI+RLLQMREQM+KLDHK+K
Sbjct: 16  TVTDSSGGDMKRKRKRSRADHVFNPLMNSY--EGC--SEAKIYRLLQMREQMIKLDHKKK 71

Query: 78  GVVDEDGNNNNKGLHLIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHF 137
             V+E G    KGLHLIHLLLITATAADENNV  ALENLTELYQ+VS TGDSVQRVVA+F
Sbjct: 72  AAVEETG----KGLHLIHLLLITATAADENNVGSALENLTELYQSVSFTGDSVQRVVAYF 127

Query: 138 ADGLAARLLTRRSPFYEMITKQPTEEEEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQ 197
           ADGLAARLLT++SPFY+MI K+PT EEEFLAFTDLYRVSPY+QLAHFTANQAILEA+E++
Sbjct: 128 ADGLAARLLTKKSPFYDMIMKEPTSEEEFLAFTDLYRVSPYYQLAHFTANQAILEAYEKE 187

Query: 198 IENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLV 257
            +NNN ALHVIDFDVSYGFQWPSLIQSLSEKA++GNRIS RITGFG+S EELQETE+RLV
Sbjct: 188 EDNNNSALHVIDFDVSYGFQWPSLIQSLSEKASSGNRISLRITGFGKSAEELQETESRLV 247

Query: 258 SFSKSFRNLVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLNTLKIYLKISDTLNLVRSI 317
           SF+K FRNLVFEFQGL+RGS+L+N+RKKK+ETVA NLVFHLNTL   LKISDTL  +RS+
Sbjct: 248 SFAKGFRNLVFEFQGLLRGSKLINLRKKKNETVAVNLVFHLNTLNDSLKISDTLKSIRSL 307

Query: 318 KPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEI 377
            P+IV L EQEGSRSPR+FLSRFMESLHYFAAMFDSLDD LP ES++RLSIEKN+LGKEI
Sbjct: 308 NPSIVVLAEQEGSRSPRSFLSRFMESLHYFAAMFDSLDDFLPLESSERLSIEKNHLGKEI 367

Query: 378 KSMLNCDESDNGNYDNYYPRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYC 437
           KSMLN D+ D        PRY++METWK RME H F G+K+SSKSLIQAKLLLKIRTHYC
Sbjct: 368 KSMLNYDKDDAN-----CPRYDKMETWKGRMEGHGFAGMKLSSKSLIQAKLLLKIRTHYC 422

Query: 438 PLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAWHCV 479
           PLQFD E +  GFKVFER DGKAISLGWQDRCL+TA+AWHCV
Sbjct: 423 PLQFDGE-SGGGFKVFERDDGKAISLGWQDRCLITASAWHCV 463

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224146420|ref|XP_002326001.1| GRAS family transcription factor [Populus trichocarpa] gi|222862876|gb|EEF00383.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225463934|ref|XP_002266212.1| PREDICTED: DELLA protein RGL2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533989|ref|XP_003535540.1| PREDICTED: protein SCARECROW 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356574591|ref|XP_003555429.1| PREDICTED: protein SCARECROW-like [Glycine max] Back     alignment and taxonomy information
>gi|255571808|ref|XP_002526847.1| DELLA protein GAI1, putative [Ricinus communis] gi|223533851|gb|EEF35582.1| DELLA protein GAI1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357443431|ref|XP_003591993.1| Protein SCARECROW [Medicago truncatula] gi|355481041|gb|AES62244.1| Protein SCARECROW [Medicago truncatula] Back     alignment and taxonomy information
>gi|356561361|ref|XP_003548951.1| PREDICTED: DELLA protein GAI-like [Glycine max] Back     alignment and taxonomy information
>gi|356499014|ref|XP_003518339.1| PREDICTED: DELLA protein GAI-like [Glycine max] Back     alignment and taxonomy information
>gi|147800574|emb|CAN77508.1| hypothetical protein VITISV_037741 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query479
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.653 0.757 0.312 3.3e-45
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.634 0.465 0.338 1.5e-44
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.634 0.517 0.333 9.8e-44
TAIR|locus:2020487445 LAS "AT1G55580" [Arabidopsis t 0.557 0.6 0.355 6.7e-43
TAIR|locus:2165685405 AT5G41920 "AT5G41920" [Arabido 0.613 0.725 0.340 9.5e-42
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.622 0.583 0.318 2e-41
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.645 0.564 0.339 1.5e-39
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.676 0.661 0.300 2.4e-37
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.634 0.570 0.330 3e-37
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.659 0.532 0.314 1.8e-36
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 407 (148.3 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 106/339 (31%), Positives = 183/339 (53%)

Query:   106 ENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTEEEE 165
             ENN+ +A   + EL   VS++G+ +QR+ A+  +GL ARL    S  Y+ +  +  E  E
Sbjct:    63 ENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPESYE 122

Query:   166 FLAFTD-LYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQS 224
             FL++   L+ V PYF+  + +AN AI EA +++       +H+IDF +  G QW +LIQ+
Sbjct:   123 FLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDE-----ERIHIIDFQIGQGSQWIALIQA 177

Query:   225 LSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGS---RLVN 281
              +  A  G   + RITG G     L   + RL   +K F ++ F F  + R S    + N
Sbjct:   178 FA--ARPGGAPNIRITGVGDG-SVLVTVKKRLEKLAKKF-DVPFRFNAVSRPSCEVEVEN 233

Query:   282 IRKKKHETVAANLVF---HLNTLKIYLKIS-DTL-NLVRSIKPTIVTLVEQEGSRSPRNF 336
             +  +  E +  N  +   HL    + ++   D L  +V+S+ P +VTLVEQE + +   F
Sbjct:   234 LDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVEQECNTNTSPF 293

Query:   337 LSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYYP 396
             L RF+E+L Y+ AMF+S+D  LP+   +R++IE++ + +++ +++ C+ ++         
Sbjct:   294 LPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAER------IE 347

Query:   397 RYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTH 435
             R+E +  WK+R     F    +SS  +I A +   +R +
Sbjct:   348 RHELLGKWKSRFSMAGFEPYPLSS--IISATIRALLRDY 384
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0006487 "protein N-linked glycosylation" evidence=RCA
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020487 LAS "AT1G55580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165685 AT5G41920 "AT5G41920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query479
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-107
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  323 bits (830), Expect = e-107
 Identities = 154/402 (38%), Positives = 219/402 (54%), Gaps = 49/402 (12%)

Query: 93  LIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPF 152
           L+HLLL  A A    ++SLA   L  L Q  S  GD +QR+ A+F + LAARL    S  
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGSSI 60

Query: 153 YEMITKQPTEE----EEFLAFTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVI 208
           Y  +   P+      E   A+   Y VSPY +  HFTANQAILEAFE         +H+I
Sbjct: 61  YSALPPSPSTPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFE-----GEERVHII 115

Query: 209 DFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFG----RSIEELQETENRLVSFSKSFR 264
           DFD+  G QWPSLIQ+L+ +   G     RITG G     S EEL+ET +RL  F+ S  
Sbjct: 116 DFDIGQGLQWPSLIQALASR--PGGPPHLRITGIGSPQFSSAEELEETGDRLAQFADSL- 172

Query: 265 NLVFEFQGLIRGS----RLVNIRKKKHETVAANLVFHLNTLK---IYLKISDTLNLVRSI 317
            + FEF  L+        L  +  +  E +A N VF L+ L    + L+    L LV+S+
Sbjct: 173 GVPFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSL 232

Query: 318 KPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEI 377
            P +VTLVEQE + +   FL+RF+E+LHY++A+FDSL+  LP++S +R  +E+  LG+EI
Sbjct: 233 NPKVVTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREI 292

Query: 378 KSMLNCDESDNGNYDNYYPRYERMET---WKARMESHEFGGIKMSSKSLIQAKLLLKIRT 434
            +++ C+ ++         R ER ET   W+ RM    F  + +S  ++ QAKLLL    
Sbjct: 293 VNVVACEGAE---------RVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLL---- 339

Query: 435 HYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATAW 476
                        +G++V E  +G  + LGW+ R L+ A+AW
Sbjct: 340 --------RLYYVDGYRVEED-NGSLV-LGWKGRPLVAASAW 371

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 479
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.41
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.79
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.54
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 94.15
PLN02233261 ubiquinone biosynthesis methyltransferase 93.96
PRK06202232 hypothetical protein; Provisional 91.55
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 90.85
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 89.87
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 89.02
PLN02336475 phosphoethanolamine N-methyltransferase 88.53
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 87.26
TIGR03438301 probable methyltransferase. This model represents 85.81
PF09243274 Rsm22: Mitochondrial small ribosomal subunit Rsm22 85.52
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 85.08
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 84.79
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 83.44
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 82.22
PLN02336 475 phosphoethanolamine N-methyltransferase 82.16
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 81.6
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 80.56
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 80.34
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=4.2e-107  Score=843.59  Aligned_cols=357  Identities=41%  Similarity=0.701  Sum_probs=330.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhhHHHHHHHHHHHhhccCCCcccccccCCCC----cHHHHHH
Q 041748           93 LIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPT----EEEEFLA  168 (479)
Q Consensus        93 L~~LLl~CA~AV~~gd~~~A~~~L~~L~~~aS~~Gd~~qRlA~yFaeAL~~Rl~~~~~~~~~~~~~~~~----~~~~~~A  168 (479)
                      |+|||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+||.+.+++.|..+...+.    ..+.+.|
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a   80 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA   80 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999988887766543322    3566899


Q ss_pred             HHHHHhcCCCccchhhhhHHHHHHHHHhchhccCceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecC----
Q 041748          169 FTDLYRVSPYFQLAHFTANQAILEAFEEQIENNNRALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGR----  244 (479)
Q Consensus       169 ~~~f~e~sP~~kfah~tANqAILEA~~ge~~~~~~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~----  244 (479)
                      |+.||++|||+||||||||||||||++|+     ++||||||||++|+|||+|||+||.|  ++|||+||||||++    
T Consensus        81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~-----~~vHIID~~i~~G~QW~~LiqaLa~R--~~gpp~LrIT~i~~~~~~  153 (374)
T PF03514_consen   81 YQLFYELSPFLKFAHFTANQAILEAFEGE-----RRVHIIDFGIGFGVQWPSLIQALASR--PGGPPSLRITGIGPPNSG  153 (374)
T ss_pred             HHHHHHHhhHHhhhhhchhHHHHHHhccC-----cceEEEeccCCcchHHHHHHHHHhcC--CCCCCeEEEEeccCCCCC
Confidence            99999999999999999999999999996     79999999999999999999999999  58999999999998    


Q ss_pred             ChHHHHHHHHHHHHHHhhcCCeeEEEEEeecc-c---eeccccCCCCcEEEEeeccccccccchh-----hhHHHHHHhH
Q 041748          245 SIEELQETENRLVSFSKSFRNLVFEFQGLIRG-S---RLVNIRKKKHETVAANLVFHLNTLKIYL-----KISDTLNLVR  315 (479)
Q Consensus       245 ~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~-~---~l~~L~~~~~EaLaVN~~~~Lh~L~~~~-----~~~~~L~~Ir  315 (479)
                      +.+.+++||+||.+||+++| |||||++|... +   +..+|++++||+|||||+|+||||.+++     +++.||+.||
T Consensus       154 ~~~~l~~~g~rL~~fA~~lg-v~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir  232 (374)
T PF03514_consen  154 SADELQETGRRLAEFARSLG-VPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR  232 (374)
T ss_pred             cHHHHHHHHHHHHHHHHHcC-ccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH
Confidence            78899999999999999998 99999996543 3   2345889999999999999999998643     4678999999


Q ss_pred             ccCCcEEEEEeecCCCCCCchhHHHHHHHHHHHHHhhhhhhcCCCCChHHHHHHHHHHhHHHHhhhhcCCCCCCCCCCcc
Q 041748          316 SIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNYDNYY  395 (479)
Q Consensus       316 ~L~P~VvtlvE~ea~~ns~~F~~RF~eaL~yYsalFDSLda~lp~~s~eR~~iEr~~lg~eI~niVa~eg~~~g~~~~R~  395 (479)
                      +|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.      +|+
T Consensus       233 ~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~------~R~  306 (374)
T PF03514_consen  233 SLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGE------ERV  306 (374)
T ss_pred             hcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccc------ccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998      799


Q ss_pred             ccccchhHHHHHHHcCCCccccCChHHHHHHHHHHHHhccCCCcccccccCCCCeEEEEeCCCeeEEeeeCCceEEEEee
Q 041748          396 PRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQDRCLLTATA  475 (479)
Q Consensus       396 ERhE~~~~W~~rm~~AGF~~v~ls~~~~~qak~lL~~~~~~~~~~~~~~~~~~Gf~v~~~d~g~~L~LgWk~~pL~~~Sa  475 (479)
                      ||||++++|+.||++|||+++|+|++++.|||+||+.|            .++||+|.+ ++|| |.||||++||+++||
T Consensus       307 eR~e~~~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~------------~~~g~~v~~-~~~~-l~L~Wk~~pL~~~Sa  372 (374)
T PF03514_consen  307 ERHERLEQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKF------------PGDGYTVEE-DGGC-LLLGWKGRPLVAASA  372 (374)
T ss_pred             ccccchhHHHHHHHhcCCeecCCCHHHHHHHHHHHhcc------------CCCCeEEEE-cCCE-EEEEeCCcEEEEEeC
Confidence            99999999999999999999999999999999999976            357899886 4554 569999999999999


Q ss_pred             ee
Q 041748          476 WH  477 (479)
Q Consensus       476 W~  477 (479)
                      ||
T Consensus       373 Wr  374 (374)
T PF03514_consen  373 WR  374 (374)
T ss_pred             cC
Confidence            97

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query479
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.0 bits (147), Expect = 5e-10
 Identities = 72/473 (15%), Positives = 149/473 (31%), Gaps = 130/473 (27%)

Query: 47  YHHEGCCVSEGKI-FR-LLQMREQMLKLDHKRKGVVDEDGNNNNKGLHLIHLLLITATAA 104
           +HH      E +  ++ +L + E     +   K V D              +     +  
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--------------MPKSILSKE 49

Query: 105 DENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAAR----LLTRRSPFYEMITKQP 160
           + +++ ++ + ++   +         + +V  F + +       L++      +   +QP
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP----IKTEQRQP 105

Query: 161 T-EEEEFLAFTD-LYRVSPYFQLAHFTANQAIL---EAFEEQIENNNRALH--------- 206
           +     ++   D LY  +  F   + +  Q  L   +A  E     N  +          
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 207 -----VIDFDV----SYGFQWPSL------------IQSLSEKAT-NGNRISFRITGFGR 244
                 + + V     +   W +L            +Q L  +   N    S   +    
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 245 SIEELQETENRLVSFSKSFRN-LVFEFQGLIRGSRLVNIRKKKHETVAANLVFHLN--TL 301
            I  +Q    RL+  SK + N L      L+    L+N++  K     A   F+L+   L
Sbjct: 226 RIHSIQAELRRLLK-SKPYENCL------LV----LLNVQNAKA--WNA---FNLSCKIL 269

Query: 302 KI--YLKISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMFDSLDDCLP 359
               + +++D L+   +   T ++L     + +P        E         D     LP
Sbjct: 270 LTTRFKQVTDFLS---AATTTHISLDHHSMTLTPD-------EVKSLLLKYLDCRPQDLP 319

Query: 360 QESNK----RLSIEKNYLGKEIKSMLNCDESDNGNYDNY-YPRYERMETWKARMESHEFG 414
           +E       RLSI    + + I+  L         +DN+ +   +++ T           
Sbjct: 320 REVLTTNPRRLSI----IAESIRDGLA-------TWDNWKHVNCDKLTT----------- 357

Query: 415 GIKMSSKSLIQAKLLLKIRTHYCPLQFDEENNNNGFKVFERYDGKAISLGWQD 467
            I+ S   L  A+     R  +  L     + +    +            W D
Sbjct: 358 IIESSLNVLEPAEY----RKMFDRLSVFPPSAHIPTILLSLI--------WFD 398
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query479
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.51
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.01
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.41
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 94.15
3dh0_A219 SAM dependent methyltransferase; cystal structure, 94.01
3dp7_A363 SAM-dependent methyltransferase; structural genomi 93.95
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 93.72
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 93.63
2r3s_A335 Uncharacterized protein; methyltransferase domain, 93.59
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 93.16
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 92.54
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 92.31
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 92.04
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 91.4
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 91.31
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 91.06
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 90.87
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 90.84
3ocj_A305 Putative exported protein; structural genomics, PS 90.81
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 90.63
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 90.28
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 90.07
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 89.69
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 89.67
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 89.35
1vl5_A260 Unknown conserved protein BH2331; putative methylt 89.19
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 89.14
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 88.94
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 88.58
3gu3_A284 Methyltransferase; alpha-beta protein, structural 88.4
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 87.57
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 87.4
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 87.34
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 87.3
3giw_A277 Protein of unknown function DUF574; rossmann-fold 86.92
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 86.76
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 86.28
3hnr_A220 Probable methyltransferase BT9727_4108; structural 86.14
3m70_A286 Tellurite resistance protein TEHB homolog; structu 85.7
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 85.44
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 84.73
3u81_A221 Catechol O-methyltransferase; neurotransmitter deg 84.61
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 84.09
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 83.68
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 82.94
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 82.62
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 82.25
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 82.22
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 81.84
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 81.77
3f4k_A257 Putative methyltransferase; structural genomics, P 81.48
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 81.43
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 81.4
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 81.29
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 81.23
2p7i_A250 Hypothetical protein; putative methyltransferase, 81.15
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 81.0
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.51  E-value=0.00028  Score=68.79  Aligned_cols=107  Identities=15%  Similarity=0.202  Sum_probs=69.1

Q ss_pred             eeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceecccc
Q 041748          204 ALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNIR  283 (479)
Q Consensus       204 ~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L~  283 (479)
                      .-+|+|+|.|.|    .+...|+.+   .++|..+||||+.+.+.++.+.+++.++-..   .+.+|.  ..  ++..+.
T Consensus        71 ~~~vLDlGcGtG----~~~~~la~~---~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~---~~v~~~--~~--D~~~~~  136 (261)
T 4gek_A           71 GTQVYDLGCSLG----AATLSVRRN---IHHDNCKIIAIDNSPAMIERCRRHIDAYKAP---TPVDVI--EG--DIRDIA  136 (261)
T ss_dssp             TCEEEEETCTTT----HHHHHHHHT---CCSSSCEEEEEESCHHHHHHHHHHHHTSCCS---SCEEEE--ES--CTTTCC
T ss_pred             CCEEEEEeCCCC----HHHHHHHHh---cCCCCCEEEEEECCHHHHHHHHHHHHhhccC---ceEEEe--ec--cccccc
Confidence            468999999999    345567765   3456789999999999999888887654332   244543  22  222333


Q ss_pred             CCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEE-Eee
Q 041748          284 KKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTL-VEQ  327 (479)
Q Consensus       284 ~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~Vvtl-vE~  327 (479)
                      ..+-.+++.|  +.|||+.+. .+..+|+.| +.|+|.-..+ .|.
T Consensus       137 ~~~~d~v~~~--~~l~~~~~~-~~~~~l~~i~~~LkpGG~lii~e~  179 (261)
T 4gek_A          137 IENASMVVLN--FTLQFLEPS-ERQALLDKIYQGLNPGGALVLSEK  179 (261)
T ss_dssp             CCSEEEEEEE--SCGGGSCHH-HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccceee--eeeeecCch-hHhHHHHHHHHHcCCCcEEEEEec
Confidence            4333455444  457888653 445677766 6799986544 443
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query479
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.56
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 96.17
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 95.89
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 95.79
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.26
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 93.24
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 93.2
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 92.71
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 92.56
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 92.55
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 92.53
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 92.52
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 91.82
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 91.54
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 90.91
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 90.62
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 90.27
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 88.05
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 87.27
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 87.15
d2p7ia1225 Hypothetical protein ECA1738 {Erwinia carotovora [ 85.06
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 81.83
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.56  E-value=0.00064  Score=61.55  Aligned_cols=107  Identities=16%  Similarity=0.183  Sum_probs=69.9

Q ss_pred             ceeEEEeccccccccchHHHHHhhcccCCCCCceEEEeeecCChHHHHHHHHHHHHHHhhcCCeeEEEEEeeccceeccc
Q 041748          203 RALHVIDFDVSYGFQWPSLIQSLSEKATNGNRISFRITGFGRSIEELQETENRLVSFSKSFRNLVFEFQGLIRGSRLVNI  282 (479)
Q Consensus       203 ~~VHIIDf~I~~G~QWpsLiqaLA~R~~~ggpP~LRITgI~~~~~~l~etg~rL~~fA~~lgnvpFeF~~v~~~~~l~~L  282 (479)
                      +.-||+|+|.|.|    .+...|+..   -..|..+||||+.+.+.++.+.+++.+...  . ..+++.  ..+.    .
T Consensus        39 ~~~~vLDlGCGtG----~~~~~l~~~---~~~~~~~v~giD~S~~ml~~A~~~~~~~~~--~-~~~~~~--~~d~----~  102 (225)
T d1im8a_          39 ADSNVYDLGCSRG----AATLSARRN---INQPNVKIIGIDNSQPMVERCRQHIAAYHS--E-IPVEIL--CNDI----R  102 (225)
T ss_dssp             TTCEEEEESCTTC----HHHHHHHHT---CCCSSCEEEEECSCHHHHHHHHHHHHTSCC--S-SCEEEE--CSCT----T
T ss_pred             CCCEEEEeccchh----hHHHHHHHh---hcCCCCceEEeCCCHHHHHHHHHHhHhhcc--c-chhhhc--cchh----h
Confidence            4579999999999    334455554   234678999999999999988888864433  1 345443  2221    1


Q ss_pred             cCCCCcEEEEeeccccccccchhhhHHHHHHh-HccCCcEEEEEe
Q 041748          283 RKKKHETVAANLVFHLNTLKIYLKISDTLNLV-RSIKPTIVTLVE  326 (479)
Q Consensus       283 ~~~~~EaLaVN~~~~Lh~L~~~~~~~~~L~~I-r~L~P~VvtlvE  326 (479)
                      ....+..=+|-|.+.||++..+ ....+|+.| +.|+|.-.++..
T Consensus       103 ~~~~~~~d~i~~~~~l~~~~~~-d~~~~l~~i~~~LkpgG~li~~  146 (225)
T d1im8a_         103 HVEIKNASMVILNFTLQFLPPE-DRIALLTKIYEGLNPNGVLVLS  146 (225)
T ss_dssp             TCCCCSEEEEEEESCGGGSCGG-GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccccceeeEEeeeccccChh-hHHHHHHHHHHhCCCCceeecc
Confidence            2233344455666778888643 445777777 679999866654
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure