Citrus Sinensis ID: 041775

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNAEKLKPDKVEELKPREDFFSGEVLKSAKDTEVKLRKDVVDSQELTPTVNADLNPRKDVADGEELKSSKDTELKPREDIIRGEELTSTKDAELELRKDVISSEELTSTEDPELKPRKDEANSVELKEEKVIELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLGRLIL
cccccEEEEcccEEEccccccEEEEEEEEEcccccEEEEEEEccccccEEEEccccccccccEEEEEEEEEcccccccccccccEEEEEEEEEccccccHHHHHHHccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHcccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcc
ccccEEEEcccHccccccccEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHcccccccEEEEcEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHcHccHHcccccHHHHHHHcccHcccccHHHHHcHHHHHHHcHHccccccccccccccHHcccccccccccccccccHccccccccccccccHcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHHHHHHHHHc
mnkqlleiQPKELKFIFELKkqsscsvrltnnthHYVAFKvkttspkkycvrpnvgiilpkstcdfnvtmqaqavappdmvckdkfliqstvvpvgttdeditasmfakddgryiqENKLRVIlisppnspvlspingvlkqgptyessslkdpvfskfeiltpphtvsknvegsklvnaeklkpdkveelkpredffsgevlksakdTEVKLRkdvvdsqeltptvnadlnprkdvadgeelksskdtelkprediirgeeltstkDAELELRKdvisseeltstedpelkprkdeansvelkEEKVIelnlpkevvngeelqpkKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGEldtlrsksvvknvhvGFPLLFVCMVALISFVLGRLIL
mnkqlleiqpKELKFIFELKKqsscsvrltnnthhyvafkvkttspkkycvrPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTvvpvgttdediTASMFAKDDGRYIQENKLRVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEIltpphtvsknvegsklvnaeklkpdkveelkpredffsgevlksakdtevklrkdvvdsqeltptvnadlnprkdvadgeelksskdtelkprediirgeeltstkdaelelrkdvisseeltstedpelkprkdeansvelkeekvielnlpkevvngeelqpkkDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNElqsklseaevtisklteenrlgiqekkilkgeldtlrsksVVKNVHVGFPLLFVCMVALISFVLGRLIL
MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNAEKLKPDKVEELKPREDFFSGEVLKSAKDTEVKLRKDVVDSQELTPTVNADLNPRKDVADGEELKSSKDTELKPREDIIRGEELTSTKDAELELRKDVISSEELTSTEDPELKPRKDEANSVELKEEKVIELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLGRLIL
***********ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISP********I**********************FEI********************************************************************************************************************************************************************************************************************************IQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLGRLI*
**KQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQA**********KFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISP***********************************************************************************************************************************************************************************************************************************************************************************************LFVCMVALISFVLGRLIL
MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNAEKLKPDKVEELKPREDFFSGEVLKSAKDTEVKLRKDVVDSQELTPTVNADLNPRKDVA***********ELKPREDIIRGEELTSTKDAELELRKDVISSE**********************KEEKVIELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLGRLIL
**KQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPP**********************************************************************************************************************************************L*L*****************LK******NSVELKEEKVIELNLPKEVVNGEELQP**D*ELKLMKELEFKAGKAAEELELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLGRLIL
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MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNAEKLKPDKVEELKPREDFFSGEVLKSAKDTEVKLRKDVVDSQELTPTVNADLNPRKDVADGEELKSSKDTELKPREDIIRGEELTSTKDAELELRKDVISSEELTSTEDPELKPRKDEANSVELKEEKVIELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNRLGIQEKKILKGELDTLRSKSVVKNVHVGFPLLFVCMVALISFVLGRLIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
B9DHD7386 Vesicle-associated protei yes no 0.861 0.963 0.433 9e-87
Q8VZ95256 Vesicle-associated protei no no 0.365 0.617 0.5 1e-39
Q84WW5239 Vesicle-associated protei no no 0.347 0.627 0.532 6e-39
Q9SHC8239 Vesicle-associated protei no no 0.391 0.707 0.444 7e-39
Q9LVU1220 Vesicle-associated protei no no 0.293 0.577 0.559 1e-35
O82213149 Vesicle-associated protei no no 0.307 0.892 0.526 4e-32
Q9SYC9571 Vesicle-associated protei no no 0.412 0.311 0.403 5e-32
O60119383 Vesicle-associated membra yes no 0.217 0.245 0.45 3e-12
A5GFS8243 Vesicle-associated membra yes no 0.270 0.481 0.344 3e-11
A2VDZ9243 Vesicle-associated membra yes no 0.277 0.493 0.344 5e-11
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function desciption
 Score =  321 bits (822), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 192/443 (43%), Positives = 263/443 (59%), Gaps = 71/443 (16%)

Query: 1   MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILP 60
           MN  LL+IQP+ L+F  +LKKQ+SC V+LTN THHYVAFKVKTTSPKKYCVRPNVG++ P
Sbjct: 1   MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60

Query: 61  KSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKL 120
           KSTC+F V MQA    PPDMVCKDKFLIQST V   TTDEDITASMF+K +G++I+ENKL
Sbjct: 61  KSTCEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKL 120

Query: 121 RVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNA 180
           RV L+ P +SP LSPIN   KQG  +E S LKD ++S+ E L PP    + V+  ++V  
Sbjct: 121 RVTLVPPSDSPELSPIN-TPKQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGH 179

Query: 181 EKLK-PDKVEELK-PR-------EDFFSGEVLKSAKDTEVKLRKDVVDSQELTPTVNAD- 230
           ++LK  D  +ELK P+       ED ++   LK+ KD+         DS  +      D 
Sbjct: 180 DELKAADNAKELKTPKMATVDFVEDRYTANDLKATKDS--------YDSSRMAKETGFDP 231

Query: 231 LNPRKDVADGEELKSSK--DTELKPREDIIRGEELTSTKDAELELRKDVISSEELTSTED 288
           +   KD  DG  +K++   D  +K   D+ R +  T+                 +    +
Sbjct: 232 IRSHKDADDGRAIKATTNLDAPMKKAMDLPRDQGFTNG----------------IAVDSE 275

Query: 289 PELKPRKDEANSVELKEEKVIELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEEL 348
           P++            KE  V++L    +  +G+ +                   +  +EL
Sbjct: 276 PKIS-----------KERDVVQL----QKTDGQNV-------------------RGLDEL 301

Query: 349 ELVKDIEEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNV 408
           +LVKDIEEMK K++ L+SKL +A+ TISKL EE  +  Q ++ L+ EL  LR+K +VK V
Sbjct: 302 KLVKDIEEMKLKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAELRTKKIVKEV 361

Query: 409 HVGFPLLFVCMVALISFVLGRLI 431
           H GFPLL+VC+VA I++V+G  +
Sbjct: 362 HNGFPLLYVCVVAFIAYVIGHFL 384
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|A5GFS8|VAPB_PIG Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1 Back     alignment and function description
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
255542442419 vesicle-associated membrane protein, put 0.914 0.942 0.496 2e-89
356574914474 PREDICTED: vesicle-associated protein 2- 0.939 0.856 0.473 6e-88
30680831386 vamp/synaptobrevin-associated protein 27 0.861 0.963 0.433 6e-85
356533615508 PREDICTED: uncharacterized protein LOC10 0.951 0.809 0.454 3e-84
297849186386 VAMP/synaptobrevin-associated protein 27 0.865 0.968 0.428 7e-83
225451130336 PREDICTED: vesicle-associated protein 2- 0.571 0.735 0.569 1e-74
9802569432 F22O13.31 [Arabidopsis thaliana] 0.849 0.849 0.394 4e-65
359806816295 uncharacterized protein LOC100801987 [Gl 0.474 0.694 0.607 4e-64
224131398236 predicted protein [Populus trichocarpa] 0.386 0.707 0.724 1e-62
224123302240 predicted protein [Populus trichocarpa] 0.405 0.729 0.652 1e-62
>gi|255542442|ref|XP_002512284.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223548245|gb|EEF49736.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 217/437 (49%), Positives = 267/437 (61%), Gaps = 42/437 (9%)

Query: 3   KQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKS 62
           +QLL+IQPKEL+FIFELKKQSSC+VRLTNNT H VAFKVKTTSPKKYCVRPNVGII PKS
Sbjct: 6   QQLLDIQPKELQFIFELKKQSSCAVRLTNNTFHNVAFKVKTTSPKKYCVRPNVGIISPKS 65

Query: 63  TCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRV 122
           TC+F VTMQA    P +M CKDKFLIQST VP+GTT++DIT  MF+KDDG++I+E KL+V
Sbjct: 66  TCEFTVTMQAPKAVPLEMACKDKFLIQSTAVPLGTTEKDITPDMFSKDDGKHIEEVKLKV 125

Query: 123 ILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNAEK 182
            LISPP SPVLSPINGVL +G  +ESS L+DPV S     TP HT        K++  + 
Sbjct: 126 ALISPPESPVLSPINGVLNEGSFFESSVLRDPVLS----TTPSHT------EFKMIYDQD 175

Query: 183 LKPDKVEELKPREDFFSGEVLKSAKDTEVKLRKDVVDSQELTPTVNADLNPRKDVADGEE 242
            K +K  +LKP                    +KDV+D QE  P  +A+  P  D  D EE
Sbjct: 176 TKTEKNSKLKP--------------------KKDVIDFQESKPAKDAEFMPNNDAVDAEE 215

Query: 243 LKSSKDTELKPREDIIRGEELT--STKDAELELRKDVISSEELTSTE-DPELKPRKDEAN 299
           L  +KD ELKP E    G +L   +     +   KD  + +     E  P +   KD  N
Sbjct: 216 LNLTKDEELKP-EKYDTGVKLAKFAVLPQPMNAMKDTFNDKLAKEVEFPPPMNAVKDVIN 274

Query: 300 SVELKEEKVIELNLPKEVV-NGEELQPKKDAELKL----MKELEFKAGKAAEELELVKDI 354
               K  K  E   PK V+ +    +P ++AE        K+ EF   KA  EL+LV DI
Sbjct: 275 D---KVAKDAEFPPPKNVMKDACNDKPAEEAECPAPENEEKDAEFVVVKAVNELKLVSDI 331

Query: 355 EEMKSKLNELQSKLSEAEVTISKLTEENRLGIQEKKILKGELDTLRSKSVVKNVHVGFPL 414
           EEMKSKLN L+SKL+EAE TISKLTEE RL IQE+KIL+ EL +   +  VK       L
Sbjct: 332 EEMKSKLNVLESKLNEAESTISKLTEERRLSIQERKILQEELVSTLYQKKVKKKKRKKNL 391

Query: 415 LFVCMVALISFVLGRLI 431
               + + +SF L  L+
Sbjct: 392 YQGSLTSPVSFFLQLLV 408

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574914|ref|XP_003555588.1| PREDICTED: vesicle-associated protein 2-2-like [Glycine max] Back     alignment and taxonomy information
>gi|30680831|ref|NP_172359.2| vamp/synaptobrevin-associated protein 27-2 [Arabidopsis thaliana] gi|79317397|ref|NP_001031004.1| vamp/synaptobrevin-associated protein 27-2 [Arabidopsis thaliana] gi|313471716|sp|B9DHD7.1|VAP22_ARATH RecName: Full=Vesicle-associated protein 2-2; AltName: Full=Plant VAP homolog 22; Short=AtPVA22; AltName: Full=VAMP-associated protein 2-2; AltName: Full=Vesicle-associated protein 27-2 gi|222424397|dbj|BAH20154.1| AT1G08820 [Arabidopsis thaliana] gi|222424668|dbj|BAH20288.1| AT1G08820 [Arabidopsis thaliana] gi|332190231|gb|AEE28352.1| vamp/synaptobrevin-associated protein 27-2 [Arabidopsis thaliana] gi|332190232|gb|AEE28353.1| vamp/synaptobrevin-associated protein 27-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356533615|ref|XP_003535357.1| PREDICTED: uncharacterized protein LOC100783454 [Glycine max] Back     alignment and taxonomy information
>gi|297849186|ref|XP_002892474.1| VAMP/synaptobrevin-associated protein 27-2 [Arabidopsis lyrata subsp. lyrata] gi|297338316|gb|EFH68733.1| VAMP/synaptobrevin-associated protein 27-2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225451130|ref|XP_002266266.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|298204983|emb|CBI34290.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|9802569|gb|AAF99771.1|AC003981_21 F22O13.31 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359806816|ref|NP_001241309.1| uncharacterized protein LOC100801987 [Glycine max] gi|255641982|gb|ACU21258.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224131398|ref|XP_002328529.1| predicted protein [Populus trichocarpa] gi|222838244|gb|EEE76609.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224123302|ref|XP_002319045.1| predicted protein [Populus trichocarpa] gi|222857421|gb|EEE94968.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2025585386 VAP27-2 "vamp/synaptobrevin-as 0.814 0.911 0.431 1.2e-65
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.337 0.570 0.527 2.6e-49
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.340 0.615 0.516 5.3e-47
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.340 0.668 0.510 5.9e-42
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.465 0.841 0.448 4.9e-37
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.307 0.892 0.526 2.9e-32
TAIR|locus:2008231637 AT1G51270 [Arabidopsis thalian 0.340 0.230 0.469 6.4e-32
UNIPROTKB|G4N022285 MGG_06183 "Uncharacterized pro 0.543 0.824 0.297 1.1e-16
UNIPROTKB|Q6P7K7242 vapb "Putative uncharacterized 0.356 0.636 0.335 1.1e-15
DICTYBASE|DDB_G0278773310 DDB_G0278773 "major sperm prot 0.324 0.451 0.364 4.8e-15
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 165/382 (43%), Positives = 225/382 (58%)

Query:     1 MNKQLLEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILP 60
             MN  LL+IQP+ L+F  +LKKQ+SC V+LTN THHYVAFKVKTTSPKKYCVRPNVG++ P
Sbjct:     1 MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60

Query:    61 KSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKL 120
             KSTC+F V MQA    PPDMVCKDKFLIQST V   TTDEDITASMF+K +G++I+ENKL
Sbjct:    61 KSTCEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKL 120

Query:   121 RVILISPPNSPVLSPINGVLKQGPTYESSSLKDPVFSKFEILTPPHTVSKNVEGSKLVNA 180
             RV L+ P +SP LSPIN   KQG  +E S LKD ++S+ E L PP    + V+  ++V  
Sbjct:   121 RVTLVPPSDSPELSPIN-TPKQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGH 179

Query:   181 EKLKP-DKVEELK-PRE---DFFSGEVLKSAKDTEVKLRKDVVDSQELTPTVNAD-LNPR 234
             ++LK  D  +ELK P+    DF       +A D  +K  KD  DS  +      D +   
Sbjct:   180 DELKAADNAKELKTPKMATVDFVEDRY--TAND--LKATKDSYDSSRMAKETGFDPIRSH 235

Query:   235 KDVADGEELKSSK--DTELKPREDIIRGEELTSTKDAELELRKDVISSEELTSTEDPELK 292
             KD  DG  +K++   D  +K   D+ R +  T+            + SE   S E   ++
Sbjct:   236 KDADDGRAIKATTNLDAPMKKAMDLPRDQGFTNGI---------AVDSEPKISKERDVVQ 286

Query:   293 PRKDEANSVELKEEKVIELNLPKEVVNGEELQPKKDAELKLMKELEFKAGKAAEELELVK 352
              +K +  +V   +E    L L K++   EE++ K DA    +K+ +    K  EE  +  
Sbjct:   287 LQKTDGQNVRGLDE----LKLVKDI---EEMKLKVDALESKLKQADSTISKLMEERSISS 339

Query:   353 DIEE-MKSKLNELQSKLSEAEV 373
                + ++ +L EL++K    EV
Sbjct:   340 QHRQSLQHELAELRTKKIVKEV 361
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7K7 vapb "Putative uncharacterized protein MGC76271" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278773 DDB_G0278773 "major sperm protein (MSP) domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B9DHD7VAP22_ARATHNo assigned EC number0.43340.86110.9637yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 3e-31
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 1e-16
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  115 bits (290), Expect = 3e-31
 Identities = 43/107 (40%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 5   LLEIQP-KELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKST 63
           LL I P   L F     KQ + ++ LTN +   VAFKVKTT+PK+Y VRPN GI+ P  +
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 64  CDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKD 110
               +T Q     P D   KDKF+IQ T  P    D         K+
Sbjct: 61  VTITITRQPFDKEPGDP-KKDKFVIQYTEAPDDAKDAKEAFKRAWKN 106

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.92
KOG0439218 consensus VAMP-associated protein involved in inos 99.91
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.87
PF14874102 PapD-like: Flagellar-associated PapD-like 98.37
PRK10884206 SH3 domain-containing protein; Provisional 96.51
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 96.35
PRK09918230 putative fimbrial chaperone protein; Provisional 91.47
PRK09926246 putative chaperone protein EcpD; Provisional 90.67
PRK15249253 fimbrial chaperone protein StbB; Provisional 90.59
PF14646426 MYCBPAP: MYCBP-associated protein family 90.58
PRK0440675 hypothetical protein; Provisional 88.99
PRK15246233 fimbrial assembly chaperone StbE; Provisional 88.27
PRK11385236 putativi pili assembly chaperone; Provisional 88.13
PRK0432574 hypothetical protein; Provisional 88.02
PRK15295226 fimbrial assembly chaperone SthB; Provisional 86.93
PF0410269 SlyX: SlyX; InterPro: IPR007236 The SlyX protein h 86.58
PRK15211229 fimbrial chaperone protein PefD; Provisional 86.54
PRK15299227 fimbrial chaperone protein StiB; Provisional 86.13
PF13870177 DUF4201: Domain of unknown function (DUF4201) 85.97
PRK15290243 lfpB fimbrial chaperone protein; Provisional 84.42
PRK0084677 hypothetical protein; Provisional 84.35
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 83.93
PF1419769 Cep57_CLD_2: Centrosome localisation domain of PPC 83.81
PRK0211973 hypothetical protein; Provisional 83.65
PRK15192234 fimbrial chaperone BcfG; Provisional 82.95
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 82.91
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 82.65
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 81.04
PRK15188228 fimbrial chaperone protein BcfB; Provisional 80.37
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.92  E-value=1.1e-24  Score=206.24  Aligned_cols=144  Identities=34%  Similarity=0.486  Sum_probs=116.6

Q ss_pred             eEEecCeeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCC-CCCCCCc
Q 041775            6 LEIQPKELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAP-PDMVCKD   84 (432)
Q Consensus         6 LsIdPsEL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P-~D~q~kD   84 (432)
                      ++++|. +.|+.++....++.+-+.|++..+|+||||||+|+.||||||.|.|.|++++.|+|++|++++.| +|++|+|
T Consensus         3 veisp~-~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd   81 (242)
T COG5066           3 VEISPQ-TTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD   81 (242)
T ss_pred             eEecCc-eEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence            556665 45677899999999999999999999999999999999999999999999999999999999877 4999999


Q ss_pred             eEEEEEEEcCCCCCchhhHHhhhcccCCCcceEEEeEEEEeCCCC-CCCccCCCCCCCCCCcccccCC
Q 041775           85 KFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPN-SPVLSPINGVLKQGPTYESSSL  151 (432)
Q Consensus        85 KFLVQS~~Vp~gttd~Di~~e~WKk~sk~~I~E~KLrVvfv~p~~-~~~~~~~ng~~~~~~~~~~~~~  151 (432)
                      |||||++..+...+-.|+ .++|+..++.-|++.||+|+|..... +.+.-..+|-..+....+.|.+
T Consensus        82 KFLiqs~~~~~~l~g~d~-ad~wt~~sk~~i~~rkIrcvyse~~is~nvh~~~e~~~a~~~~v~~pt~  148 (242)
T COG5066          82 KFLIQSYRFDWRLSGSDF-ADHWTSSSKKPIWTRKIRCVYSEEEISKNVHECSEDRGAAVLLVEMPTL  148 (242)
T ss_pred             eeEEEEeccChhhccchH-HHHHHhhccccchhhheeEEeeccccCCCcccccccchhhheeecccee
Confidence            999999999876555555 69999999888999999999984332 2222233444444444444433

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK04406 hypothetical protein; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK04325 hypothetical protein; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PF13870 DUF4201: Domain of unknown function (DUF4201) Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK00846 hypothetical protein; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89 Back     alignment and domain information
>PRK02119 hypothetical protein; Provisional Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 1e-11
2rr3_A130 Solution Structure Of The Complex Between Human Vap 2e-11
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 2e-10
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 1e-09
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 1e-09
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 2e-05
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 5/122 (4%)
Query: 4   QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKS 62
           Q+L ++P+ ELKF        + +++L N T   V FKVKTT+P++YCVRPN GII   +
Sbjct: 8   QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 67
Query: 63  TCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRV 122
           + + +V +Q     P +   K KF++QS   P  T+D +        +D   + ++KLR 
Sbjct: 68  SINVSVMLQPFDYDPNEK-SKHKFMVQSMFAPTDTSDMEAVWKEAKPED---LMDSKLRC 123
Query: 123 IL 124
           + 
Sbjct: 124 VF 125
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 9e-34
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 2e-33
2cri_A147 Vesicle-associated membrane protein-associated pro 5e-33
1z9l_A128 Vesicle-associated membrane protein-associated pro 6e-32
1m1s_A116 WR4; structural genomics, major sperm protein, bio 3e-28
1row_A109 SSP-19, MSP-domain protein like family member; bet 7e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 6e-05
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
 Score =  121 bits (306), Expect = 9e-34
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 5/124 (4%)

Query: 1   MNKQLLEIQP-KELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIIL 59
           +    +  QP +++ F      + +  +++TN     + + +KTT+ ++  V P  G++ 
Sbjct: 4   VPPGDINTQPSQKIVFNAPYDDKHTYHIKITNAGGRRIGWAIKTTNMRRLSVDPPCGVLD 63

Query: 60  PKSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENK 119
           PK      V+      A  D+   D+  I+ T  P G   +      F  D    ++   
Sbjct: 64  PKEKVLMAVSCDTFNAATEDL-NNDRITIEWTNTPDG-AAKQFRREWFQGDG--MVRRKN 119

Query: 120 LRVI 123
           L + 
Sbjct: 120 LPIE 123
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
2cri_A147 Vesicle-associated membrane protein-associated pro 99.97
1z9l_A128 Vesicle-associated membrane protein-associated pro 99.97
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 99.97
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 99.96
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.93
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.92
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.02
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 97.72
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 97.71
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.12
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 95.31
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 94.46
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 89.22
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 88.89
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 88.73
3efg_A78 Protein SLYX homolog; xanthomonas campestris PV. c 86.92
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 86.2
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 85.05
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 83.72
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
Probab=99.97  E-value=2.5e-31  Score=235.26  Aligned_cols=124  Identities=32%  Similarity=0.572  Sum_probs=113.3

Q ss_pred             CceEEecC-eeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCCC
Q 041775            4 QLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMVC   82 (432)
Q Consensus         4 ~LLsIdPs-EL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q~   82 (432)
                      ++|.|+|. +|+|.++++++++|.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+|+++...| +++|
T Consensus        13 ~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p-~~~~   91 (147)
T 2cri_A           13 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDP-NEKS   91 (147)
T ss_dssp             CCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCT-TCCS
T ss_pred             CeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCc-cccC
Confidence            68999996 999999999999999999999999999999999999999999999999999999999999986655 4689


Q ss_pred             CceEEEEEEEcCCCCCchhhHHhhhcccCCCcceEEEeEEEEeCCCCCC
Q 041775           83 KDKFLIQSTVVPVGTTDEDITASMFAKDDGRYIQENKLRVILISPPNSP  131 (432)
Q Consensus        83 kDKFLVQS~~Vp~gttd~Di~~e~WKk~sk~~I~E~KLrVvfv~p~~~~  131 (432)
                      +|||+||++.++++.++   ..++|++..+..++++||||+|+.|++..
T Consensus        92 kDKFlVqs~~~~~~~~d---~~~~wk~~~~~~i~e~kLrv~f~~p~~~~  137 (147)
T 2cri_A           92 KHKFMVQTIFAPPNISD---MEAVWKEAKPDELMDSKLRCVFEMPNEND  137 (147)
T ss_dssp             CCCEEEEEEECCTTCCC---HHHHHHHSCTTTCEEEEEEEEEECSCCSS
T ss_pred             CCEEEEEEEEcCCCccc---HHHHhhcCCCCceEEEEEEEEEecCCCCc
Confidence            99999999999976543   46899999889999999999999887653
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 6e-35
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 6e-32
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 1e-25
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 6e-25
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (313), Expect = 6e-35
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 2   NKQLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILP 60
              LL I P  EL F      +    + LTN T + VAFKV+TT+P+KY V+P+     P
Sbjct: 15  KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDP 74

Query: 61  KSTCDFNVTMQAQAVAPPDMVCKDKFLIQSTVVPVGTTDEDITASMFAKD-DGRYIQENK 119
            ++ D  V+          +  +D+FLI +  +   +       S F K+     + E++
Sbjct: 75  GASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHR 130

Query: 120 LRVILISP--PNSPVLS-PING 138
           LR   +    PNS +LS P +G
Sbjct: 131 LRCHTVESSKPNSLMLSGPSSG 152
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.96
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.95
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.87
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.87
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 94.15
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 93.48
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 92.14
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 92.1
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4e-29  Score=221.28  Aligned_cols=125  Identities=26%  Similarity=0.357  Sum_probs=110.8

Q ss_pred             CCceEEecC-eeEEeecCCCeeeEEEEEEcCCCCeEEEEEeeCCCCceeecCCceeecCCCeEEEEEEeccCccCCCCCC
Q 041775            3 KQLLEIQPK-ELKFIFELKKQSSCSVRLTNNTHHYVAFKVKTTSPKKYCVRPNVGIILPKSTCDFNVTMQAQAVAPPDMV   81 (432)
Q Consensus         3 s~LLsIdPs-EL~F~~p~~kq~s~tLtLtN~Sd~~VAFKVKTTSPkrY~VRPn~GII~PgeSv~I~VTLqp~~~~P~D~q   81 (432)
                      .+||.|+|. +|+|.++++++++|.|+|+|.++++||||||||+|++|+|||++|+|.||++++|.|++++..    .+.
T Consensus        16 ~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~~----~~~   91 (152)
T d1wica_          16 GPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGL----TVS   91 (152)
T ss_dssp             CSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSS----CCC
T ss_pred             CCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCCC----ccc
Confidence            369999996 799999999999999999999999999999999999999999999999999999999998763    346


Q ss_pred             CCceEEEEEEEcCCCCCc-hhhHHhhhcccCCCcceEEEeEEEEeCCCCCC
Q 041775           82 CKDKFLIQSTVVPVGTTD-EDITASMFAKDDGRYIQENKLRVILISPPNSP  131 (432)
Q Consensus        82 ~kDKFLVQS~~Vp~gttd-~Di~~e~WKk~sk~~I~E~KLrVvfv~p~~~~  131 (432)
                      ++|||+|+++.+++..+. ..-+.+||++..+..++++||+|+|+.++.+.
T Consensus        92 ~kdKFli~~~~v~~~~~~~~~d~~~~wk~~~~~~i~~~kLkv~~~~~~~p~  142 (152)
T d1wica_          92 AQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLRCHTVESSKPN  142 (152)
T ss_dssp             SSCCEEEEEEECCSSCCCSHHHHHHHHHHSCTTTCEEEEECBCCCCSCSSS
T ss_pred             CCCcEEEEEEEeCCCCCCCccCHHHHhhcCCcCcEEEEEEEEEEeCCCCCC
Confidence            899999999999765432 22346899998889999999999999888653
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure