Citrus Sinensis ID: 041777

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSEGFSGGLW
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccEEEEEccEEEHHHHHccccccHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccEEEEEcccEEEHHHcccccccHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mcfcrghamtTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFqklgymkpppwyyslranrhgtIITTWFLGNYIKSClknsgafevfcdGELVFSKLMEQRFPGEFELRELVSRKLYNlrnsegfsgglw
Flexible Loop (DISEMBL)
MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRelvsrklynlrnsegfsgglw
Low Complexity Region (SEG)
MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSEGFSGGLW
Disordered region (IsUnstruct)
**FCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNL***********
Disordered Region (DISOPRED)
*CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLY*************
Disordered Region (DISEMBL)
********MTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS********
Disordered Region (DISPRO)
MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLR**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSEGFSGGLW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9STZ2	209	SelT-like protein OS=Arab	yes	no	0.879	0.626	0.587	2e-41
Q9BN19	244	Putative esophageal gland	N/A	no	0.946	0.577	0.274	3e-10
Q9VMV6	198	SelT-like protein OS=Dros	yes	no	0.812	0.611	0.311	1e-08
Q19892	216	Putative selT-like protei	yes	no	0.919	0.634	0.241	2e-08
Q9U3N5	247	Putative selT-like protei	no	no	0.859	0.518	0.263	1e-07
Q502K9	210	Selenoprotein T2 OS=Danio	yes	no	0.892	0.633	0.211	0.0001

>sp|Q9STZ2|SELT_ARATH SelT-like protein OS=Arabidopsis thaliana GN=At3g47300 PE=2 SV=2

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 101/131 (77%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  +G A++ K MLE  FPG+ V LAN+P P  KR++  V+P+ Q GVI +IMGGEQIF 
Sbjct: 67  CSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFP 126

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
            +G  +PP WY+SLRANR G++ +TW LGN+++S L++SGAFEV C+GELVFSKL E RF
Sbjct: 127 MIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRF 186

Query: 122 PGEFELRELVS 132
           PGE ELR+L+S
Sbjct: 187 PGEIELRDLIS 197

Arabidopsis thaliana (taxid: 3702)

>sp|Q9BN19|HSP6_HETGL Putative esophageal gland cell secretory protein 6 OS=Heterodera glycines GN=HSP6 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 1/142 (0%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  R        +L E +PGI +   N+P  +L+ +   VI +++  +IV ++ G   F 
Sbjct: 91  CGYRQAYEQFAQILREKYPGIDIHGENYPPGILRTVGAQVIGMVKIALIVCVVSGRSPFP 150

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
            LG ++ P ++  + +NR    +  +   N I+  L+++GAFE++ + E ++SKL   R 
Sbjct: 151 TLG-LETPTFFQWMLSNRLSAALMLFLFSNAIEGMLQSTGAFEIYIESERIWSKLESGRV 209

Query: 122 PGEFELRELVSRKLYNLRNSEG 143
           P   EL + +   L   R   G
Sbjct: 210 PSPPELFQAIDSHLAIRRGGAG 231

Heterodera glycines (taxid: 51029)

>sp|Q9VMV6|SELT_DROME SelT-like protein OS=Drosophila melanogaster GN=CG3887 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 64/122 (52%), Gaps = 1/122 (0%)

Query: 14  MLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYY 73
           +L E +P I V   N+  P L   +  +I  L+  +IV ++     F  LG +  P W+ 
Sbjct: 64  LLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLG-LNTPSWWS 122

Query: 74  SLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSR 133
            ++AN+    +  +FLGN +++ L +SGAFE+  +   V+SKL   RFP    L +++  
Sbjct: 123 HMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDN 182

Query: 134 KL 135
            L
Sbjct: 183 HL 184

Drosophila melanogaster (taxid: 7227)

>sp|Q19892|SELT2_CAEEL Putative selT-like protein F28H7.4 OS=Caenorhabditis elegans GN=F28H7.4 PE=3 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 2   CFCRGHAMTTKHMLE---EAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQ 58
           C   G+        E   E +PG+ +   N      K  +  ++ + + G+I I++ G  
Sbjct: 77  CVSCGYKQAFNQFYEFAKEKYPGLVIEGGNFSPDFWKGCLAQIVGVAKIGLIAIVITGSN 136

Query: 59  IFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLME 118
            F+ +G+  P     +   NR    +  + +GN  +S L ++GAFE+F   + ++SK+ +
Sbjct: 137 PFEYIGFGYPQ-ILQTAHYNRFSYSLLVFMIGNLFESTLSSTGAFEIFLGDKQIWSKISK 195

Query: 119 QRFPGEFELRELVSRKLYNLR 139
           +R P + E   L+  +L  +R
Sbjct: 196 ERVPTQEEFLNLIDLQLKTIR 216

Caenorhabditis elegans (taxid: 6239)

>sp|Q9U3N5|SELT1_CAEEL Putative selT-like protein C35C5.3 OS=Caenorhabditis elegans GN=C35C5.3 PE=3 SV=2

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 16  EEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSL 75
           +E +P + +  AN    L K  +   +  ++  V+V+++GG   F++ G   P    ++ 
Sbjct: 109 KEKYPNMPIEGANFAPVLWKAYVAQALSFVKMAVLVLVLGGINPFERFGLGYPQILQHA- 167

Query: 76  RANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135
             N+  + +  + LGN ++  L ++GAFEV+   E ++SK+   R P   E  +L+  +L
Sbjct: 168 HGNKMSSCMLVFMLGNLVEQSLISTGAFEVYLGNEQIWSKIESGRVPSPQEFMQLIDAQL 227

Query: 136 YNL----RNSEGF 144
             L     N+E F
Sbjct: 228 AVLGKAPVNTESF 240

Caenorhabditis elegans (taxid: 6239)

>sp|Q502K9|SELT2_DANRE Selenoprotein T2 OS=Danio rerio GN=selt2 PE=2 SV=3

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 64/137 (46%), Gaps = 4/137 (2%)

Query: 2   CFCRGHAMTTKHM---LEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQ 58
           C   G++   +     + + +P I +   N+P   + + +G  +   +   I +I+ G+ 
Sbjct: 62  CISUGYSKVFQEYSRSISQLYPDIRIEGDNYPPKPINKYLGNFLSYFKLLAIALIVTGQN 121

Query: 59  IFQKLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLME 118
            FQ  G   P  W +  + N+  + +  +F+ N +++   ++GAFE+  +   ++SKL  
Sbjct: 122 PFQMFGMNTPRIWAWG-QENKIFSCLMAFFISNMLETHFLSTGAFEITLNDIPIWSKLQS 180

Query: 119 QRFPGEFELRELVSRKL 135
              P   EL +++   L
Sbjct: 181 GYVPNIQELFQILDNHL 197

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
225439410	227	PREDICTED: selT-like protein [Vitis vini	0.993	0.651	0.608	1e-48
147854126	232	hypothetical protein VITISV_024323 [Viti	0.993	0.637	0.608	1e-48
449529662	227	PREDICTED: selT-like protein-like [Cucum	0.979	0.643	0.614	2e-45
449439880	227	PREDICTED: selT-like protein-like [Cucum	0.979	0.643	0.614	2e-45
224139124	223	predicted protein [Populus trichocarpa]	0.899	0.600	0.641	9e-45
118487159	223	unknown [Populus trichocarpa]	0.899	0.600	0.641	9e-45
351727377	228	uncharacterized protein LOC100527643 pre	0.979	0.640	0.585	3e-44
307135926	227	selenoprotein t precursor [Cucumis melo	0.979	0.643	0.587	5e-44
388522965	230	unknown [Lotus japonicus]	0.919	0.595	0.579	6e-43
357125716	250	PREDICTED: selT-like protein-like [Brach	0.906	0.54	0.588	1e-42

>gi|225439410|ref|XP_002264265.1| PREDICTED: selT-like protein [Vitis vinifera] gi|296083168|emb|CBI22804.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 117/148 (79%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  RG+A+T K+MLE  FPG+TV LAN+P PL KRL+  V+P++Q GVI I+M GEQIF 
Sbjct: 76  CSYRGNAVTMKNMLESQFPGVTVVLANYPPPLPKRLLSKVVPVVQIGVIGIVMAGEQIFP 135

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG++ PPPWYYSLRANR GTI TTW LGN+++S L++SGAFEV+C+GELVFSKL +QRF
Sbjct: 136 RLGFIAPPPWYYSLRANRFGTISTTWLLGNFLQSFLQSSGAFEVYCNGELVFSKLKQQRF 195

Query: 122 PGEFELRELVSRKLYNLRNSEGFSGGLW 149
           PGE EL++LV ++L   R  +    G+W
Sbjct: 196 PGEIELKDLVGQRLVASRIVDDVGAGVW 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147854126|emb|CAN83419.1| hypothetical protein VITISV_024323 [Vitis vinifera]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/148 (60%), Positives = 117/148 (79%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  RG+A+T K+MLE  FPG+TV LAN+P PL KRL+  V+P++Q GVI I+M GEQIF 
Sbjct: 81  CSYRGNAVTMKNMLESQFPGVTVVLANYPPPLPKRLLSKVVPVVQIGVIGIVMAGEQIFP 140

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG++ PPPWYYSLRANR GTI TTW LGN+++S L++SGAFEV+C+GELVFSKL +QRF
Sbjct: 141 RLGFIAPPPWYYSLRANRFGTISTTWLLGNFLQSFLQSSGAFEVYCNGELVFSKLKQQRF 200

Query: 122 PGEFELRELVSRKLYNLRNSEGFSGGLW 149
           PGE EL++LV ++L   R  +    G+W
Sbjct: 201 PGEIELKDLVGQRLVASRIVDDVGAGVW 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529662|ref|XP_004171817.1| PREDICTED: selT-like protein-like [Cucumis sativus]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 114/148 (77%), Gaps = 2/148 (1%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  R  A+T K+MLE +FPG+ V LAN+P PL KRL+  V+P +Q G+I IIM GE IF 
Sbjct: 81  CSYRSTAITMKNMLESSFPGVEVILANYPPPLPKRLLSKVVPAVQFGIIGIIMAGEHIFP 140

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG M PPPWYYSLRANR G+I +TW  GN+I+S L++SGAFEV+C+GE+VFSKL EQRF
Sbjct: 141 RLG-MVPPPWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAFEVYCNGEMVFSKLKEQRF 199

Query: 122 PGEFELRELVSRKLYNLRNSEGFSGGLW 149
           PGE ELR+L+ RKL  LR  +  SGG+W
Sbjct: 200 PGEIELRDLIGRKLSGLRFVDN-SGGVW 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439880|ref|XP_004137713.1| PREDICTED: selT-like protein-like [Cucumis sativus]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/148 (61%), Positives = 114/148 (77%), Gaps = 2/148 (1%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  R  A+T K+MLE +FPG+ V LAN+P PL KRL+  V+P +Q G+I IIM GE IF 
Sbjct: 81  CSYRSTAITMKNMLESSFPGVEVILANYPPPLPKRLLSKVVPAVQFGIIGIIMAGEHIFP 140

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG M PPPWYYSLRANR G+I +TW  GN+I+S L++SGAFEV+C+GE+VFSKL EQRF
Sbjct: 141 RLG-MVPPPWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAFEVYCNGEMVFSKLKEQRF 199

Query: 122 PGEFELRELVSRKLYNLRNSEGFSGGLW 149
           PGE ELR+L+ RKL  LR  +  SGG+W
Sbjct: 200 PGEIELRDLIGRKLSGLRFVDN-SGGVW 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139124|ref|XP_002322986.1| predicted protein [Populus trichocarpa] gi|222867616|gb|EEF04747.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 106/134 (79%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  RG A+T K+MLE  FPGI V LANHP PL KRL+  V+P +Q G+I II+ GEQIF 
Sbjct: 87  CSYRGTAVTMKNMLESEFPGIQVILANHPAPLPKRLLSKVVPAVQFGIIGIILAGEQIFP 146

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG+  PP WYYSLRANR G+I +TW  GN+I+S L++SGAFEVFC+GELVFSKLME RF
Sbjct: 147 RLGFAAPPSWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAFEVFCNGELVFSKLMEHRF 206

Query: 122 PGEFELRELVSRKL 135
           PGE ELR++V ++L
Sbjct: 207 PGEIELRDVVGKRL 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487159|gb|ABK95408.1| unknown [Populus trichocarpa]

 Score =  184 bits (467), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 106/134 (79%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  RG A+T K+MLE  FPGI V LANHP  L KRL+  V+P +Q G+I II+ GEQIF 
Sbjct: 87  CSYRGTAVTMKNMLESEFPGIQVILANHPASLPKRLLSKVVPAVQFGIIGIILAGEQIFP 146

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG+  PPPWYYSLRANR G+I +TW  GN+I+S L++SGAFEVFC+GELVFSKLME RF
Sbjct: 147 RLGFAAPPPWYYSLRANRFGSIASTWLFGNFIQSFLQSSGAFEVFCNGELVFSKLMEHRF 206

Query: 122 PGEFELRELVSRKL 135
           PGE ELR++V ++L
Sbjct: 207 PGEIELRDVVGKRL 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727377|ref|NP_001235367.1| uncharacterized protein LOC100527643 precursor [Glycine max] gi|255632840|gb|ACU16773.1| unknown [Glycine max]

 Score =  182 bits (462), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/147 (58%), Positives = 114/147 (77%), Gaps = 1/147 (0%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  +G+A+T K+MLE  FPGI V LAN+P PL KR++G V+P++Q G+IV I+ G+QIF 
Sbjct: 81  CSYKGNAVTVKNMLEFEFPGINVVLANYPPPLPKRILGKVVPVVQTGIIVAIVAGDQIFP 140

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG + PPPWYYSLRAN+  +I +TW L N+++S L++SGAFEV+C+G+LVFSKL E RF
Sbjct: 141 RLG-ITPPPWYYSLRANKFRSIASTWLLTNFLQSFLQSSGAFEVYCNGDLVFSKLKENRF 199

Query: 122 PGEFELRELVSRKLYNLRNSEGFSGGL 148
           PGE ELRELV R+L N R   G  GG+
Sbjct: 200 PGEIELRELVGRRLANTRFVSGIEGGV 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135926|gb|ADN33788.1| selenoprotein t precursor [Cucumis melo subsp. melo] gi|307136469|gb|ADN34273.1| selenoprotein t [Cucumis melo subsp. melo]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 113/148 (76%), Gaps = 2/148 (1%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  RG A+  K+MLE +FPG+ V LAN+P P  KRL+  V+P++Q G+I II+ GE IF 
Sbjct: 81  CSYRGTAINMKNMLESSFPGVEVILANYPPPFPKRLLSKVVPVVQFGIIGIIVAGEHIFP 140

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG M PPPWYYSLRANR G+I +TW  GN+++S L++SGAFEV+C+GE+VFSKL EQRF
Sbjct: 141 RLG-MVPPPWYYSLRANRFGSIASTWLFGNFVQSFLQSSGAFEVYCNGEMVFSKLKEQRF 199

Query: 122 PGEFELRELVSRKLYNLRNSEGFSGGLW 149
           PGE ELR+L+ RKL   R  +  SGG+W
Sbjct: 200 PGEIELRDLIGRKLSGSRFVDN-SGGVW 226

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522965|gb|AFK49544.1| unknown [Lotus japonicus]

 Score =  178 bits (452), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 80/138 (57%), Positives = 109/138 (78%), Gaps = 1/138 (0%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  +G+A+T K+MLE  FPGI V LAN+P PL KR++  +IP++Q G++V I+ G+QIF 
Sbjct: 79  CSYKGNAVTVKNMLESVFPGINVVLANYPPPLPKRVLSKIIPVVQTGIVVSIVAGDQIFP 138

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           +LG++ PPPWYYSLRAN+  +I +TW   N+I+S L++SGAFEV+C+GELVFSKL E RF
Sbjct: 139 RLGFV-PPPWYYSLRANKFRSIASTWLFANFIQSFLQSSGAFEVYCNGELVFSKLKENRF 197

Query: 122 PGEFELRELVSRKLYNLR 139
           PGE EL++LV R+L N R
Sbjct: 198 PGEIELKDLVERRLANTR 215

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357125716|ref|XP_003564536.1| PREDICTED: selT-like protein-like [Brachypodium distachyon]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 103/136 (75%), Gaps = 1/136 (0%)

Query: 2   CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
           C  RG+AMT K MLE +FPGI V L N+P P  KR +G ++P LQ G +  +M G+QIF 
Sbjct: 82  CSYRGNAMTMKRMLETSFPGIAVVLENYPPPFPKRALGKIVPFLQVGALATLMAGDQIFP 141

Query: 62  KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
           + G M PPPWYYSLRANR GT+ + W LGN+ +S L++SGAFEV+C+G++VFSKL EQRF
Sbjct: 142 RFG-MVPPPWYYSLRANRFGTMASVWLLGNFAQSLLQSSGAFEVYCNGQMVFSKLSEQRF 200

Query: 122 PGEFELRELVSRKLYN 137
           P EFELREL+S +L +
Sbjct: 201 PSEFELRELISNRLSD 216

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2099540	209	SELT "SELT-like protein precur	0.879	0.626	0.587	3.7e-39
TAIR|locus:2178873	228	AT5G58640 [Arabidopsis thalian	0.899	0.587	0.544	1e-36
WB|WBGene00009238	216	F28H7.4 [Caenorhabditis elegan	0.825	0.569	0.25	2.5e-10
FB|FBgn0031670	198	CG3887 [Drosophila melanogaste	0.812	0.611	0.311	6.6e-10
WB|WBGene00007955	247	C35C5.3 [Caenorhabditis elegan	0.798	0.481	0.258	2.4e-09
RGD|1306682	115	Mien1 "migration and invasion	0.295	0.382	0.477	1e-06
UNIPROTKB|E2QXW4	197	SELT "Uncharacterized protein"	0.812	0.614	0.227	1.8e-06
ZFIN|ZDB-GENE-030411-4	210	selt2 "selenoprotein T, 2" [Da	0.805	0.571	0.223	2.9e-06
UNIPROTKB|F1NTW9	146	SELT "Selenoprotein T" [Gallus	0.805	0.821	0.219	5.5e-06
UNIPROTKB|Q6IAK0	137	SELT "Selenoprotein T" [Homo s	0.805	0.875	0.219	5.5e-06

TAIR|locus:2099540 SELT "SELT-like protein precursor" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 77/131 (58%), Positives = 101/131 (77%)

Query:     2 CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
             C  +G A++ K MLE  FPG+ V LAN+P P  KR++  V+P+ Q GVI +IMGGEQIF 
Sbjct:    67 CSYKGTAVSMKKMLESVFPGLDVVLANYPAPAPKRILAKVVPVAQVGVIGLIMGGEQIFP 126

Query:    62 KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
              +G  +PP WY+SLRANR G++ +TW LGN+++S L++SGAFEV C+GELVFSKL E RF
Sbjct:   127 MIGIAQPPAWYHSLRANRFGSMASTWLLGNFLQSFLQSSGAFEVSCNGELVFSKLKEGRF 186

Query:   122 PGEFELRELVS 132
             PGE ELR+L+S
Sbjct:   187 PGEIELRDLIS 197

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2178873 AT5G58640 [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 73/134 (54%), Positives = 101/134 (75%)

Query:     2 CFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQ 61
             C  +G A+T K MLE AFPG+ V LAN+P P  KRL+  V+P++Q GVI +I+ G++I  
Sbjct:    84 CSYKGTAVTMKKMLETAFPGLDVILANYPPPAPKRLLAKVVPVVQMGVIGMIVAGDRILP 143

Query:    62 KLGYMKPPPWYYSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRF 121
              +G   PP W++SLRANR G++ +TW +GN+++S L++SGAFEV C+GE VFSKL E RF
Sbjct:   144 MIGITNPPAWFHSLRANRFGSMASTWLIGNFLQSYLQSSGAFEVHCNGEPVFSKLKEGRF 203

Query:   122 PGEFELRELVSRKL 135
             PGE ELR+L+S+ L
Sbjct:   204 PGEIELRDLISKTL 217

GO:0008430 "selenium binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00009238 F28H7.4 [Caenorhabditis elegans (taxid:6239)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 31/124 (25%), Positives = 64/124 (51%)

Query:    16 EEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSL 75
             +E +PG+ +   N      K  +  ++ + + G+I I++ G   F+ +G+  P     + 
Sbjct:    94 KEKYPGLVIEGGNFSPDFWKGCLAQIVGVAKIGLIAIVITGSNPFEYIGFGYPQI-LQTA 152

Query:    76 RANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135
               NR    +  + +GN  +S L ++GAFE+F   + ++SK+ ++R P + E   L+  +L
Sbjct:   153 HYNRFSYSLLVFMIGNLFESTLSSTGAFEIFLGDKQIWSKISKERVPTQEEFLNLIDLQL 212

Query:   136 YNLR 139
               +R
Sbjct:   213 KTIR 216

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

FB|FBgn0031670 CG3887 [Drosophila melanogaster (taxid:7227)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 38/122 (31%), Positives = 64/122 (52%)

Query:    14 MLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYY 73
             +L E +P I V   N+  P L   +  +I  L+  +IV ++     F  LG +  P W+ 
Sbjct:    64 LLGEKYPQIQVNGGNYDPPGLNYYLSKMIFALKIIIIVSVVSAVSPFTFLG-LNTPSWWS 122

Query:    74 SLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSR 133
              ++AN+    +  +FLGN +++ L +SGAFE+  +   V+SKL   RFP    L +++  
Sbjct:   123 HMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSKLQTGRFPSPEVLFQIIDN 182

Query:   134 KL 135
              L
Sbjct:   183 HL 184

GO:0005575 "cellular_component" evidence=ND

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

WB|WBGene00007955 C35C5.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 139 (54.0 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 31/120 (25%), Positives = 62/120 (51%)

Query:    16 EEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSL 75
             +E +P + +  AN    L K  +   +  ++  V+V+++GG   F++ G   P    ++ 
Sbjct:   109 KEKYPNMPIEGANFAPVLWKAYVAQALSFVKMAVLVLVLGGINPFERFGLGYPQILQHA- 167

Query:    76 RANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135
               N+  + +  + LGN ++  L ++GAFEV+   E ++SK+   R P   E  +L+  +L
Sbjct:   168 HGNKMSSCMLVFMLGNLVEQSLISTGAFEVYLGNEQIWSKIESGRVPSPQEFMQLIDAQL 227

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

RGD|1306682 Mien1 "migration and invasion enhancer 1" [Rattus norvegicus (taxid:10116)]

 Score = 88 (36.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query:    90 GNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSR 133
             G  I+S L  +GAFE+  +G+LVFSKL    FP E +L E + R
Sbjct:    52 GIEIESRLGGTGAFEIEINGQLVFSKLENGGFPYEKDLMEAIRR 95

GO:0005829 "cytosol" evidence=ISO

GO:0008430 "selenium binding" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0031235 "intrinsic to internal side of plasma membrane" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0051491 "positive regulation of filopodium assembly" evidence=ISO

UNIPROTKB|E2QXW4 SELT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 28/123 (22%), Positives = 62/123 (50%)

Query:    14 MLEEAFPGITVTLANH-PRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWY 72
             ++ + +P I +   N+ P+P+  R +   + + +  +I +I+ G+  F   G   P  W 
Sbjct:    62 VISQRYPDIRIEGENYLPQPIYSRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQ 121

Query:    73 YSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVS 132
             +  + N+    +  +FL N I++   ++GAFE+  +   V+SKL     P   +L +++ 
Sbjct:   122 WG-QENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 180

Query:   133 RKL 135
              ++
Sbjct:   181 NEM 183

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0008430 "selenium binding" evidence=IEA

ZFIN|ZDB-GENE-030411-4 selt2 "selenoprotein T, 2" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 27/121 (22%), Positives = 59/121 (48%)

Query:    15 LEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYS 74
             + + +P I +   N+P   + + +G  +   +   I +I+ G+  FQ  G   P  W + 
Sbjct:    78 ISQLYPDIRIEGDNYPPKPINKYLGNFLSYFKLLAIALIVTGQNPFQMFGMNTPRIWAWG 137

Query:    75 LRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRK 134
              + N+  + +  +F+ N +++   ++GAFE+  +   ++SKL     P   EL +++   
Sbjct:   138 -QENKIFSCLMAFFISNMLETHFLSTGAFEITLNDIPIWSKLQSGYVPNIQELFQILDNH 196

Query:   135 L 135
             L
Sbjct:   197 L 197

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|F1NTW9 SELT "Selenoprotein T" [Gallus gallus (taxid:9031)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 27/123 (21%), Positives = 62/123 (50%)

Query:    14 MLEEAFPGITVTLANH-PRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWY 72
             ++ + +P I +   N+ P+P+ + +    + + +  +I +I+ G+  F   G   P  W 
Sbjct:    12 VISQRYPDIRIEGENYLPQPIYRHIASF-LSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQ 70

Query:    73 YSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVS 132
             +  + N+    +  +FL N I++   ++GAFE+  +   V+SKL     P   +L +++ 
Sbjct:    71 WG-QENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 129

Query:   133 RKL 135
              ++
Sbjct:   130 NEM 132

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q6IAK0 SELT "Selenoprotein T" [Homo sapiens (taxid:9606)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 27/123 (21%), Positives = 62/123 (50%)

Query:    14 MLEEAFPGITVTLANH-PRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWY 72
             ++ + +P I +   N+ P+P+ + +    + + +  +I +I+ G+  F   G   P  W 
Sbjct:     3 VISQRYPDIRIEGENYLPQPIYRHIASF-LSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQ 61

Query:    73 YSLRANRHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVS 132
             +  + N+    +  +FL N I++   ++GAFE+  +   V+SKL     P   +L +++ 
Sbjct:    62 WG-QENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILD 120

Query:   133 RKL 135
              ++
Sbjct:   121 NEM 123

GO:0008430 "selenium binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STZ2	SELT_ARATH	No assigned EC number	0.5877	0.8791	0.6267	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
TIGR02174	72	TIGR02174, CXXU_selWTH, selT/selW/selH selenoprote	2e-09
pfam10262	76	pfam10262, Rdx, Rdx family	3e-09

>gnl|CDD|233762 TIGR02174, CXXU_selWTH, selT/selW/selH selenoprotein domain

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELV 131
           +GAFEV  +G+LV+SKL    FP   EL++L+
Sbjct: 40  TGAFEVTVNGQLVWSKLRGGGFPEPEELKQLI 71

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam. Length = 72

>gnl|CDD|204425 pfam10262, Rdx, Rdx family

 Score = 50.0 bits (120), Expect = 3e-09
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRK 134
            GAFEV  +GEL++SK  +  FP   EL++LV   
Sbjct: 42  GGAFEVTVNGELIWSKKEDGGFPEAKELKQLVRDA 76

This entry is an approximately 100 residue region of selenoprotein-T, conserved from plants to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins, including selenoprotein T. However, despite its binding to UGTR and that its mRNA is up-regulated in extended asphyxia, the function of the protein and hence of this region of it is unknown. Selenoprotein W contains selenium as selenocysteine in the primary protein structure and levels of this selenoprotein are affected by selenium. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG3286	226	consensus Selenoprotein T [General function predic	100.0
PF10262	76	Rdx: Rdx family; InterPro: IPR011893 This entry re	99.8
TIGR02174	72	CXXU_selWTH selT/selW/selH selenoprotein domain. T	99.79
COG3526	99	Uncharacterized protein conserved in bacteria [Pos	99.22
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	87.6

>KOG3286 consensus Selenoprotein T [General function prediction only]

Probab=100.00  E-value=3e-57  Score=366.32  Aligned_cols=143  Identities=32%  Similarity=0.510  Sum_probs=139.7

Q ss_pred             CCcchhhHHHHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcch
Q 041777            1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRH   80 (149)
Q Consensus         1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~   80 (149)
                      |||||++|+||+++|+++||+++|+|+|||||+||++|||+++++|+++|++|+.|++||+++|+. .|+||+|.++||+
T Consensus        79 SCgYk~af~~~~~~l~ekyPgl~IegaNy~Pp~~kr~lAk~v~v~k~gvIglii~G~~pF~~iGl~-~P~iwqh~~aNkf  157 (226)
T KOG3286|consen   79 SCGYKQAFEQYKKFLKEKYPGLDIEGANYPPPAWKRYLAKVVSVVKMGVIGLIIGGKNPFEFIGLG-YPSIWQHAQANKF  157 (226)
T ss_pred             ecCcHHHHHHHHHHHHhhCCCceeecCcCCCchHHHHHHHHHHHHhheeEEEEeccCCccceecCC-CcHHHHHHHhhhH
Confidence            899999999999999999999999999999999999999999999999999999999999999996 9999999999999


Q ss_pred             hhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccccCCc
Q 041777           81 GTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSEGF  144 (149)
Q Consensus        81 ~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~~~~  144 (149)
                      ++|||+|||||++|++|+|||||||++||++||||+++||+|+++|+.|+|+++|...+.++..
T Consensus       158 ~scm~vf~lGN~les~L~StGAFEI~lndepVwSKl~~gr~Ps~~el~qlid~~L~~~~~~~~~  221 (226)
T KOG3286|consen  158 YSCMMVFFLGNMLESQLISTGAFEITLNDEPVWSKLESGRLPSPQELVQLIDNQLKLNVKLPGN  221 (226)
T ss_pred             HHHHHHHHHHHHHHHHhhccCcEEEEECCEeeeehhhccCCCCHHHHHHHHHHhhhheeecCCC
Confidence            9999999999999999999999999999999999999999999999999999999988887754

>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life

Probab=99.80  E-value=1e-19  Score=125.97  Aligned_cols=65  Identities=38%  Similarity=0.595  Sum_probs=59.8

Q ss_pred             CCcchhhHHHHHHHHHhhCCC--cEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhc
Q 041777            1 MCFCRGHAMTTKHMLEEAFPG--ITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRAN   78 (149)
Q Consensus         1 sCgyr~~f~~~~~~l~~~yP~--i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~N   78 (149)
                      +|||+..|.++++.|+++||+  ..|++                                                    
T Consensus        10 ~C~~~~~a~~l~~~l~~~fp~~~~~v~~----------------------------------------------------   37 (76)
T PF10262_consen   10 SCGYRPRALELAQELLQTFPDRIAEVEL----------------------------------------------------   37 (76)
T ss_dssp             TTTCHHHHHHHHHHHHHHSTTTCSEEEE----------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHCCCcceEEEE----------------------------------------------------
Confidence            699999999999999999999  78988                                                    


Q ss_pred             chhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHH
Q 041777           79 RHGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRK  134 (149)
Q Consensus        79 K~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~  134 (149)
                                       ...++|+|||++||++||||+++|+||+++||+++|++|
T Consensus        38 -----------------~~~~~G~FEV~v~g~lI~SK~~~g~fP~~~~i~~~I~~~   76 (76)
T PF10262_consen   38 -----------------SPGSTGAFEVTVNGELIFSKLESGRFPDPDEIVQLIRDH   76 (76)
T ss_dssp             -----------------EEESTT-EEEEETTEEEEEHHHHTSSS-HHHHHHHHHHH
T ss_pred             -----------------EeccCCEEEEEEccEEEEEehhcCCCCCHHHHHHHHhcC
Confidence                             457899999999999999999999999999999999986

Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.

>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain

Probab=99.79  E-value=4.6e-19  Score=122.16  Aligned_cols=65  Identities=38%  Similarity=0.585  Sum_probs=62.3

Q ss_pred             CCcchhhHHHHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcch
Q 041777            1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRH   80 (149)
Q Consensus         1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~   80 (149)
                      +|||+..|.++++.|.++||+..+.++++||                                                 
T Consensus         8 ~C~y~~Ra~~l~q~L~~~Fp~~~v~~~~~~~-------------------------------------------------   38 (72)
T TIGR02174         8 SCGYKPRAAWLKQELLEEFPDLEIEGENTPP-------------------------------------------------   38 (72)
T ss_pred             CCCChHHHHHHHHHHHHHCCCCeeEEeeecC-------------------------------------------------
Confidence            7999999999999999999999999998876                                                 


Q ss_pred             hhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHH
Q 041777           81 GTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVS  132 (149)
Q Consensus        81 ~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~  132 (149)
                                        ++|+|||++||++||||+++|+||+++||+++|+
T Consensus        39 ------------------~~G~Fev~~~g~~v~sk~~~~~fp~~~~~~~~ir   72 (72)
T TIGR02174        39 ------------------TTGAFEVTVNGQLVWSKLRGGGFPEPEELKQLIR   72 (72)
T ss_pred             ------------------CCcEEEEEECCEEEEEeccCCCCCCHHHHHHhhC
Confidence                              8999999999999999999999999999999985

This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.

>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=1.8e-11  Score=88.34  Aligned_cols=44  Identities=27%  Similarity=0.502  Sum_probs=41.5

Q ss_pred             cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777           98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS  141 (149)
Q Consensus        98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~  141 (149)
                      .++|.|||++||++||.|+++|+||++++|+|.|+|.++|+|-.
T Consensus        45 gTGG~FeI~~dg~~iWeRKrdGGFP~ak~LKQrvRD~idPeRDL   88 (99)
T COG3526          45 GTGGVFEITCDGVLIWERKRDGGFPEAKVLKQRVRDLIDPERDL   88 (99)
T ss_pred             CCCceEEEEECCEEEEEeeccCCCCchHHHHHHHHhhcCccccc
Confidence            46899999999999999999999999999999999999999854

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=87.60  E-value=0.73  Score=30.98  Aligned_cols=24  Identities=38%  Similarity=0.708  Sum_probs=18.8

Q ss_pred             EEECCEEEEeecccCCCCCHHHHHHHHH
Q 041777          105 VFCDGELVFSKLMEQRFPGEFELRELVS  132 (149)
Q Consensus       105 V~~ng~lV~SKl~~grfP~~~el~~~I~  132 (149)
                      +.+||+.+|+    |+.|+.+||.++|+
T Consensus        53 lvIng~~~~~----G~~p~~~el~~~l~   76 (76)
T PF13192_consen   53 LVINGKVVFV----GRVPSKEELKELLE   76 (76)
T ss_dssp             EEETTEEEEE----SS--HHHHHHHHHH
T ss_pred             EEECCEEEEE----ecCCCHHHHHHHhC
Confidence            5789999887    88999999999874

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	149
2npb_A	96	Selenoprotein W; structure, thioredoxin-like fold,	5e-06
2fa8_A	105	Hypothetical protein ATU0228; ALPH-beta structure,	5e-05
2p0g_A	105	Selenoprotein W-related protein; VCR75, structural	2e-04
2oka_A	104	Hypothetical protein; PAR82, NESG, structural geno	3e-04
2ojl_A	108	Hypothetical protein; BPR68, NESG, Q7WAF1, structu	8e-04

>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus} Length = 96

 Score = 42.0 bits (98), Expect = 5e-06
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 73  YSLRANRHGTIITTWFLGNY---IKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRE 129
           Y  +  +    +   F G      +   + +G FEV   G+LV SK     +        
Sbjct: 15  YKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTVAGKLVHSKKRGDGYVDTESKFR 74

Query: 130 LVSRKL 135
            +   +
Sbjct: 75  KLVTAI 80

>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23 Length = 105

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELV 131
           G FE+  DG +++ +  +  FPG  EL++ +
Sbjct: 50  GLFEITVDGTIIWERKRDGGFPGPKELKQRI 80

>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae} Length = 105

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELV 131
           G FE+FC+G  ++ +  E  FP    L++ V
Sbjct: 46  GRFEIFCNGVQIWERKQEGGFPEAKVLKQRV 76

>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A Length = 104

 Score = 37.1 bits (86), Expect = 3e-04
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 73  YSLRANRHGTIITTWFLGNYIKSCLK--NSGAFEVFCDGELVFSKLMEQRFPGEFELREL 130
           + LRA      + + F  +  K CL+    G F + CDG  V+ +  +  FP    L++ 
Sbjct: 18  WLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITCDGVQVWERKADGGFPEAKALKQR 77

Query: 131 V 131
           V
Sbjct: 78  V 78

>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis} Length = 108

 Score = 35.9 bits (83), Expect = 8e-04
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 101 GAFEVFCDGELVFSKLMEQRFPGEFELRELV 131
           G F +  +G  ++ + ++  FP    L++ V
Sbjct: 51  GVFRIHYNGAPLWDREVDGGFPEAKVLKQRV 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
2npb_A	96	Selenoprotein W; structure, thioredoxin-like fold,	99.79
2oka_A	104	Hypothetical protein; PAR82, NESG, structural geno	99.71
2p0g_A	105	Selenoprotein W-related protein; VCR75, structural	99.7
2fa8_A	105	Hypothetical protein ATU0228; ALPH-beta structure,	99.7
2ljk_A	117	Protein C17ORF37; MIEN1, oncoprotein, signaling pr	99.54
2ojl_A	108	Hypothetical protein; BPR68, NESG, Q7WAF1, structu	99.44
3dex_A	107	SAV_2001; alpha-beta protein, structural genomics,	99.35

>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}

Probab=99.79  E-value=1.1e-19  Score=131.21  Aligned_cols=75  Identities=23%  Similarity=0.292  Sum_probs=68.0

Q ss_pred             CCcchhhHHHHHHHHHhhCCC-cEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcc
Q 041777            1 MCFCRGHAMTTKHMLEEAFPG-ITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANR   79 (149)
Q Consensus         1 sCgyr~~f~~~~~~l~~~yP~-i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK   79 (149)
                      +|||+..|.++++.|.++||+ +.|+++.-|                                                 
T Consensus        12 ~C~y~~ra~~laqeLl~~Fp~~l~V~~~l~p-------------------------------------------------   42 (96)
T 2npb_A           12 ACGYKPKYLQLKEKLEHEFPGCLDICGEGTP-------------------------------------------------   42 (96)
T ss_dssp             CSCHHHHHHHHHHHHHHHSBTTEEEEECCCS-------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHhCCcceEEEEEEcC-------------------------------------------------
Confidence            699999999999999999998 888887311                                                 


Q ss_pred             hhhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccccC
Q 041777           80 HGTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNSE  142 (149)
Q Consensus        80 ~~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~~  142 (149)
                                        .++|+|||++||++||||+++||||+++|++|.|++++++.+...
T Consensus        43 ------------------~~~G~FEV~vng~lV~SKk~~ggFP~~~el~q~I~~~i~~~~~~~   87 (96)
T 2npb_A           43 ------------------QVTGFFEVTVAGKLVHSKKRGDGYVDTESKFRKLVTAIKAALAQC   87 (96)
T ss_dssp             ------------------SCCSCCEEEETTEEEEETTTTCCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCcEEEEEECCEEEEEEecCCCCCChHHHHHHHHHHHhhhhcCC
Confidence                              589999999999999999999999999999999999998877544

>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A

Probab=99.71  E-value=1.6e-17  Score=121.69  Aligned_cols=44  Identities=25%  Similarity=0.505  Sum_probs=41.3

Q ss_pred             cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777           98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS  141 (149)
Q Consensus        98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~  141 (149)
                      .++|+|||++||++||||+++|+||+++||+|+|++++++.|..
T Consensus        45 ~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i~p~r~l   88 (104)
T 2oka_A           45 GTGGVFRITCDGVQVWERKADGGFPEAKALKQRVRDRIDPQRDL   88 (104)
T ss_dssp             ECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCSSCC-
T ss_pred             CCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHhCcCccC
Confidence            47999999999999999999999999999999999999998864

>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}

Probab=99.70  E-value=2.3e-17  Score=121.02  Aligned_cols=44  Identities=27%  Similarity=0.529  Sum_probs=37.1

Q ss_pred             cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777           98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS  141 (149)
Q Consensus        98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~  141 (149)
                      .++|+|||++||++||||+++||||+++||+++|++++++.|..
T Consensus        43 ~~~G~FEV~vng~lV~SKk~~ggFPe~~eLkq~Vrd~i~p~r~l   86 (105)
T 2p0g_A           43 DTGGRFEIFCNGVQIWERKQEGGFPEAKVLKQRVRDLIDPERDL   86 (105)
T ss_dssp             ESTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHTTC------
T ss_pred             CCCceEEEEECCEEEEEEecCCCCCCHHHHHHHHHHHhCcCccc
Confidence            47999999999999999999999999999999999999987743

>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23

Probab=99.70  E-value=2.1e-17  Score=121.15  Aligned_cols=44  Identities=25%  Similarity=0.510  Sum_probs=41.5

Q ss_pred             cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777           98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS  141 (149)
Q Consensus        98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~  141 (149)
                      .++|+|||++||++||||+++||||+++||+|+|++++++.|..
T Consensus        47 ~~~G~FEV~vng~lV~SKk~~ggFPe~~elkq~Vr~~i~p~~~l   90 (105)
T 2fa8_A           47 STGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERDL   90 (105)
T ss_dssp             ECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCTTCCC
T ss_pred             CCCcEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHHhCcCccC
Confidence            47999999999999999999999999999999999999998754

>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}

Probab=99.54  E-value=9.2e-16  Score=114.41  Aligned_cols=70  Identities=33%  Similarity=0.496  Sum_probs=62.3

Q ss_pred             CCcchhhHHHHHHHHHhhCCCcEEecccCCCchHHHHHHHHHhHHHHHHHHHHhhCchhhhhcCCCCCchhHHHhhhcch
Q 041777            1 MCFCRGHAMTTKHMLEEAFPGITVTLANHPRPLLKRLMGIVIPILQGGVIVIIMGGEQIFQKLGYMKPPPWYYSLRANRH   80 (149)
Q Consensus         1 sCgyr~~f~~~~~~l~~~yP~i~i~g~nYpp~~~~~~lak~l~~~q~~~i~~i~~G~~if~~lg~~~~P~~~~~~~~NK~   80 (149)
                      .|||..-+.++++.|.+.||+..|++.                                                     
T Consensus        34 ~C~~~~ra~~laqeLl~tFp~~~V~l~-----------------------------------------------------   60 (117)
T 2ljk_A           34 PCGFEATYLELASAVKEQYPGIEIESR-----------------------------------------------------   60 (117)
T ss_dssp             TTTCHHHHHHHHHHHTTTCSSSCCEEE-----------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHhhCCcceEEEe-----------------------------------------------------
Confidence            499999999999999999999765431                                                     


Q ss_pred             hhHHHHHhhHHHHhhhhcCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccc
Q 041777           81 GTIITTWFLGNYIKSCLKNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLR  139 (149)
Q Consensus        81 ~~~~~~ffl~N~i~~~L~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~  139 (149)
                                      -.++|+|||++||++||||+++||||+.+||+++|++++..+.
T Consensus        61 ----------------pg~~G~FeV~v~g~li~sk~~~g~FPe~~el~~~Vrd~~~g~~  103 (117)
T 2ljk_A           61 ----------------LGGTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGET  103 (117)
T ss_dssp             ----------------ECSSSCEEEETTSSCCBCHHHHCSCCCTTTTTHHHHHHTTTSC
T ss_pred             ----------------cCCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHhhCCCC
Confidence                            2469999999999999999999999999999999999987653

>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}

Probab=99.44  E-value=6.2e-14  Score=103.31  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=37.0

Q ss_pred             cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhcccccc
Q 041777           98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRNS  141 (149)
Q Consensus        98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~~  141 (149)
                      .++|+|||++||++||||+++||||+.+||+|+|++++++.|..
T Consensus        48 ~~~G~FeV~vng~lVwsRk~~ggFPe~keLkq~Vrd~i~p~r~L   91 (108)
T 2ojl_A           48 GTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQRVRDHLDPGRPL   91 (108)
T ss_dssp             ECTTCEEEEETTEEEEEHHHHCSCCCHHHHHHHHHHHC------
T ss_pred             CCCceEEEEECCEEEEEEccCCCCCCHHHHHHHHHHHhCcCccc
Confidence            47899999999999999999999999999999999999987643

>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0

Probab=99.35  E-value=4.2e-13  Score=98.75  Aligned_cols=42  Identities=29%  Similarity=0.480  Sum_probs=36.8

Q ss_pred             cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccc
Q 041777           98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRN  140 (149)
Q Consensus        98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~  140 (149)
                      .++|+|||++||++||||+ +|+||+.+||+|+|+++++|.|.
T Consensus        52 g~gG~FeV~vdg~lVwsRk-~gGFPd~keLkq~VRd~i~p~~~   93 (107)
T 3dex_A           52 GTGGVFVVRVDDEVVWDRR-EQGFPEPTAVKRLVRDRVAPEKS   93 (107)
T ss_dssp             ESSSCEEEEETTEEEEEHH-HHCSCCHHHHHHHHHHTTC----
T ss_pred             CCCceEEEEECCEEEEEec-CCCCCCHHHHHHHHHHHhCCCCC
Confidence            3799999999999999999 99999999999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	149
d2fa8a1	86	c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {A	1e-06

>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]} Length = 86

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Hypothetical protein Atu0228
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 41.9 bits (99), Expect = 1e-06
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 100 SGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKL 135
            G FE+  DG +++ +  +  FPG  EL++ +   +
Sbjct: 44  GGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLI 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d2fa8a1	86	Hypothetical protein Atu0228 {Agrobacterium tumefa	99.49
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	88.39

>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Hypothetical protein Atu0228
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.49  E-value=8.8e-15  Score=102.29  Aligned_cols=43  Identities=26%  Similarity=0.538  Sum_probs=40.9

Q ss_pred             cCCceEEEEECCEEEEeecccCCCCCHHHHHHHHHHHhccccc
Q 041777           98 KNSGAFEVFCDGELVFSKLMEQRFPGEFELRELVSRKLYNLRN  140 (149)
Q Consensus        98 ~~~GaFEV~~ng~lV~SKl~~grfP~~~el~~~I~~~l~~~~~  140 (149)
                      .++|+|||++||++||||+++|+||+.+||+|+|+|+++|.+.
T Consensus        42 ~~~G~FeV~v~g~li~srk~~ggFPd~kelkq~VRd~i~p~~~   84 (86)
T d2fa8a1          42 STGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDLIDPERD   84 (86)
T ss_dssp             ECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHHHCTTCC
T ss_pred             CCCeEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHhhCcCCC
Confidence            4789999999999999999999999999999999999999875

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.39  E-value=0.16  Score=33.02  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             EEECCEEEEeecccCCCCCHHHHHHHH
Q 041777          105 VFCDGELVFSKLMEQRFPGEFELRELV  131 (149)
Q Consensus       105 V~~ng~lV~SKl~~grfP~~~el~~~I  131 (149)
                      +.+||+.+++    |+.|+.+||.+.|
T Consensus        54 lvIdg~vv~~----G~vPs~~ei~~~L   76 (77)
T d1iloa_          54 LAVDGELKIM----GRVASKEEIKKIL   76 (77)
T ss_dssp             EEETTEEEEC----SSCCCHHHHHHHC
T ss_pred             EEECCEEEEE----ecCCCHHHHHHHh
Confidence            5789999997    8999999999875